Query 017418
Match_columns 372
No_of_seqs 279 out of 1996
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:05:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 6.5E-56 2.2E-60 448.5 2.0 271 90-371 3-288 (428)
2 1zy8_K Pyruvate dehydrogenase 100.0 1.6E-31 5.6E-36 249.2 4.8 154 89-242 3-169 (229)
3 2ii3_A Lipoamide acyltransfera 99.8 8.6E-21 2.9E-25 180.2 9.5 91 281-371 30-120 (262)
4 1dpb_A Dihydrolipoyl-transacet 99.8 2.7E-20 9.4E-25 175.0 8.6 90 282-371 15-105 (243)
5 3mae_A 2-oxoisovalerate dehydr 99.8 2.8E-20 9.5E-25 176.1 8.4 90 280-371 16-107 (256)
6 3rqc_A Probable lipoamide acyl 99.8 2.9E-20 9.8E-25 172.9 7.6 87 281-371 5-92 (224)
7 3l60_A Branched-chain alpha-ke 99.8 1.6E-19 5.3E-24 170.4 11.2 84 283-371 16-102 (250)
8 1scz_A E2, dihydrolipoamide su 99.8 7.4E-20 2.5E-24 171.0 8.4 88 282-371 4-93 (233)
9 3crk_C Dihydrolipoyllysine-res 99.8 2.5E-18 8.4E-23 136.7 12.9 79 89-167 5-84 (87)
10 1k8m_A E2 component of branche 99.8 1.7E-18 5.7E-23 139.7 10.9 81 88-168 3-83 (93)
11 1y8o_B Dihydrolipoyllysine-res 99.8 2.3E-18 7.9E-23 146.7 12.0 79 89-167 27-106 (128)
12 2dnc_A Pyruvate dehydrogenase 99.8 3.6E-18 1.2E-22 139.0 12.1 81 88-168 6-87 (98)
13 2dne_A Dihydrolipoyllysine-res 99.7 8.5E-18 2.9E-22 139.2 11.2 82 84-167 4-86 (108)
14 3b8k_A PDCE2;, dihydrolipoylly 99.7 4.6E-19 1.6E-23 166.2 3.3 87 282-371 12-99 (239)
15 1ghj_A E2, E2, the dihydrolipo 99.7 1.3E-17 4.5E-22 129.8 9.7 76 90-165 2-77 (79)
16 2l5t_A Lipoamide acyltransfera 99.7 7.4E-17 2.5E-21 124.8 8.8 75 90-164 2-76 (77)
17 1pmr_A Dihydrolipoyl succinylt 99.7 5E-18 1.7E-22 132.6 -0.1 76 90-165 3-78 (80)
18 1qjo_A Dihydrolipoamide acetyl 99.7 2.1E-16 7.3E-21 123.0 9.1 76 90-167 3-78 (80)
19 1iyu_A E2P, dihydrolipoamide a 99.6 1.2E-15 4E-20 118.7 10.7 75 90-167 2-76 (79)
20 1gjx_A Pyruvate dehydrogenase; 99.6 3.8E-16 1.3E-20 121.9 5.0 77 89-166 2-78 (81)
21 2k7v_A Dihydrolipoyllysine-res 99.5 5.7E-15 1.9E-19 116.6 0.6 71 91-167 4-74 (85)
22 1z6h_A Biotin/lipoyl attachmen 99.4 8.5E-13 2.9E-17 100.1 9.7 63 103-165 7-69 (72)
23 2kcc_A Acetyl-COA carboxylase 99.4 5.1E-13 1.7E-17 105.2 5.9 64 103-167 13-76 (84)
24 2dn8_A Acetyl-COA carboxylase 99.4 3E-12 1E-16 104.0 9.9 63 103-166 25-87 (100)
25 1dcz_A Transcarboxylase 1.3S s 99.4 3.9E-12 1.3E-16 97.7 9.8 71 88-164 7-77 (77)
26 2jku_A Propionyl-COA carboxyla 99.3 2.8E-13 9.6E-18 109.0 2.9 76 89-164 15-94 (94)
27 2d5d_A Methylmalonyl-COA decar 99.3 6.9E-12 2.4E-16 95.3 9.7 62 103-164 13-74 (74)
28 1bdo_A Acetyl-COA carboxylase; 99.3 6.9E-12 2.4E-16 97.3 9.1 62 103-164 12-80 (80)
29 2xt6_A 2-oxoglutarate decarbox 99.3 1.5E-12 5.1E-17 144.7 7.0 75 297-371 1-78 (1113)
30 1q23_A Chloramphenicol acetylt 99.3 3.6E-12 1.2E-16 117.9 8.2 62 299-371 25-86 (219)
31 2ejm_A Methylcrotonoyl-COA car 99.3 1.3E-11 4.3E-16 100.2 9.3 66 103-168 22-87 (99)
32 3cla_A Type III chloramphenico 99.3 5.7E-12 2E-16 116.0 7.7 61 300-371 21-81 (213)
33 2eq9_C Pyruvate dehydrogenase 99.3 3.5E-12 1.2E-16 87.1 4.4 38 203-240 2-39 (41)
34 2eq8_C Pyruvate dehydrogenase 99.2 4.8E-12 1.6E-16 86.0 4.3 37 204-240 2-38 (40)
35 2i9d_A Chloramphenicol acetylt 99.2 1.1E-11 3.7E-16 114.5 8.1 62 300-371 23-84 (217)
36 3rnm_E Lipoamide acyltransfera 99.2 5.3E-12 1.8E-16 92.8 3.8 42 201-242 7-48 (58)
37 2eq7_C 2-oxoglutarate dehydrog 99.2 4.3E-12 1.5E-16 86.3 3.0 37 204-240 2-38 (40)
38 3n6r_A Propionyl-COA carboxyla 99.2 5.1E-11 1.7E-15 126.8 9.4 62 103-164 620-681 (681)
39 1w85_I Dihydrolipoyllysine-res 99.1 2.1E-11 7.3E-16 86.5 3.9 40 201-240 6-45 (49)
40 1w4i_A Pyruvate dehydrogenase 99.1 3.7E-11 1.3E-15 89.5 5.2 42 202-243 5-46 (62)
41 1bal_A Dihydrolipoamide succin 99.1 2E-11 7E-16 87.4 2.6 40 201-240 9-48 (51)
42 3va7_A KLLA0E08119P; carboxyla 99.1 2.5E-10 8.4E-15 128.3 11.2 61 103-163 1175-1235(1236)
43 3hbl_A Pyruvate carboxylase; T 99.1 2.2E-10 7.6E-15 128.0 10.2 73 88-166 1076-1148(1150)
44 2coo_A Lipoamide acyltransfera 99.1 1.9E-10 6.5E-15 87.7 6.5 42 201-242 15-56 (70)
45 3u9t_A MCC alpha, methylcroton 99.0 1.8E-11 6.1E-16 130.2 0.0 64 103-166 610-673 (675)
46 2f60_K Pyruvate dehydrogenase 99.0 7.9E-11 2.7E-15 88.2 3.1 41 202-242 10-50 (64)
47 2k32_A A; NMR {Campylobacter j 98.9 1.8E-09 6.2E-14 89.3 6.4 65 103-167 9-103 (116)
48 3bg3_A Pyruvate carboxylase, m 98.8 1.2E-09 4.1E-14 116.5 3.5 62 103-164 657-718 (718)
49 2qf7_A Pyruvate carboxylase pr 98.8 5E-09 1.7E-13 117.3 6.0 69 90-164 1096-1164(1165)
50 1zko_A Glycine cleavage system 98.7 1.4E-08 4.9E-13 87.0 6.4 71 91-167 38-116 (136)
51 1hpc_A H protein of the glycin 98.3 3.9E-07 1.3E-11 77.5 4.0 71 90-166 28-106 (131)
52 3a7l_A H-protein, glycine clea 98.3 1E-06 3.5E-11 74.7 6.1 71 90-166 29-107 (128)
53 1onl_A Glycine cleavage system 98.2 1.9E-06 6.3E-11 73.1 6.4 71 90-166 28-106 (128)
54 3lnn_A Membrane fusion protein 98.1 5.5E-06 1.9E-10 80.5 7.2 64 103-166 65-205 (359)
55 3ne5_B Cation efflux system pr 98.0 6.6E-06 2.3E-10 82.2 7.7 63 103-165 129-240 (413)
56 2f1m_A Acriflavine resistance 98.0 1.8E-06 6.1E-11 81.1 3.1 64 103-166 30-166 (277)
57 3fpp_A Macrolide-specific effl 98.0 6.5E-06 2.2E-10 79.4 6.2 63 103-165 39-189 (341)
58 1vf7_A Multidrug resistance pr 97.7 1E-05 3.6E-10 79.3 3.1 63 103-165 51-172 (369)
59 3klr_A Glycine cleavage system 97.7 5.2E-05 1.8E-09 63.8 6.4 46 104-149 32-78 (125)
60 3mxu_A Glycine cleavage system 97.6 9.2E-05 3.2E-09 63.6 6.3 45 104-148 54-99 (143)
61 3tzu_A GCVH, glycine cleavage 97.5 9.7E-05 3.3E-09 63.1 5.5 44 104-147 49-93 (137)
62 4dk0_A Putative MACA; alpha-ha 97.3 1.1E-05 3.6E-10 78.7 -3.5 62 103-164 40-189 (369)
63 3hgb_A Glycine cleavage system 97.3 0.00036 1.2E-08 60.6 6.3 44 104-147 59-103 (155)
64 3na6_A Succinylglutamate desuc 96.8 0.0025 8.7E-08 61.8 8.0 61 103-166 265-329 (331)
65 3cdx_A Succinylglutamatedesucc 96.7 0.0031 1E-07 61.7 7.7 61 103-166 275-339 (354)
66 3fmc_A Putative succinylglutam 96.6 0.004 1.4E-07 61.3 8.1 60 104-165 298-363 (368)
67 2dn8_A Acetyl-COA carboxylase 96.6 0.00098 3.3E-08 53.3 2.8 46 120-165 5-50 (100)
68 1z6h_A Biotin/lipoyl attachmen 95.9 0.0087 3E-07 44.2 4.7 33 134-166 1-33 (72)
69 2d5d_A Methylmalonyl-COA decar 95.9 0.012 4E-07 43.6 5.1 34 133-166 6-39 (74)
70 1dcz_A Transcarboxylase 1.3S s 95.8 0.01 3.5E-07 44.4 4.7 35 132-166 8-42 (77)
71 2k32_A A; NMR {Campylobacter j 95.5 0.014 4.8E-07 47.4 4.9 34 133-166 2-35 (116)
72 2gpr_A Glucose-permease IIA co 95.5 0.016 5.6E-07 50.2 5.3 66 90-165 8-112 (154)
73 1f3z_A EIIA-GLC, glucose-speci 95.5 0.021 7.3E-07 49.8 6.0 66 90-165 13-117 (161)
74 2qj8_A MLR6093 protein; struct 95.4 0.027 9.4E-07 54.3 7.1 60 104-165 265-328 (332)
75 2kcc_A Acetyl-COA carboxylase 95.0 0.013 4.6E-07 45.1 3.0 34 133-166 6-39 (84)
76 1ax3_A Iiaglc, glucose permeas 95.0 0.019 6.6E-07 50.2 4.2 59 103-165 20-117 (162)
77 2f1m_A Acriflavine resistance 94.3 0.046 1.6E-06 50.7 5.3 52 113-165 4-55 (277)
78 2xha_A NUSG, transcription ant 93.9 0.05 1.7E-06 48.8 4.5 31 108-144 22-52 (193)
79 2ejm_A Methylcrotonoyl-COA car 93.9 0.045 1.5E-06 43.4 3.7 36 131-166 13-48 (99)
80 1bdo_A Acetyl-COA carboxylase; 93.8 0.049 1.7E-06 41.1 3.6 34 133-166 5-45 (80)
81 2jku_A Propionyl-COA carboxyla 93.5 0.031 1.1E-06 44.0 2.2 35 132-166 25-59 (94)
82 3lnn_A Membrane fusion protein 93.5 0.053 1.8E-06 52.1 4.3 55 112-166 36-91 (359)
83 2l5t_A Lipoamide acyltransfera 93.3 0.086 3E-06 39.4 4.4 26 103-128 52-77 (77)
84 3fpp_A Macrolide-specific effl 93.3 0.091 3.1E-06 50.1 5.5 55 111-166 11-65 (341)
85 1ghj_A E2, E2, the dihydrolipo 93.1 0.16 5.6E-06 38.1 5.6 34 89-128 44-77 (79)
86 3crk_C Dihydrolipoyllysine-res 92.9 0.17 5.6E-06 39.0 5.5 35 89-129 48-83 (87)
87 1qjo_A Dihydrolipoamide acetyl 92.6 0.11 3.9E-06 39.0 4.1 35 89-129 43-77 (80)
88 3d4r_A Domain of unknown funct 92.3 0.14 4.8E-06 44.6 4.8 45 103-147 108-153 (169)
89 1k8m_A E2 component of branche 92.2 0.19 6.5E-06 39.3 5.0 27 103-129 55-81 (93)
90 2auk_A DNA-directed RNA polyme 91.6 0.24 8.1E-06 44.2 5.6 47 108-156 63-109 (190)
91 2xhc_A Transcription antitermi 91.6 0.16 5.5E-06 49.6 4.8 31 108-144 62-92 (352)
92 1iyu_A E2P, dihydrolipoamide a 91.5 0.24 8.2E-06 37.1 4.8 35 89-129 41-75 (79)
93 1y8o_B Dihydrolipoyllysine-res 91.1 0.3 1E-05 40.8 5.4 27 103-129 78-105 (128)
94 2dnc_A Pyruvate dehydrogenase 90.9 0.28 9.5E-06 38.8 4.8 36 89-130 50-86 (98)
95 1vf7_A Multidrug resistance pr 90.5 0.18 6.2E-06 48.9 4.0 44 122-166 34-77 (369)
96 3ne5_B Cation efflux system pr 90.4 0.24 8.1E-06 49.0 4.9 54 113-166 101-156 (413)
97 1gjx_A Pyruvate dehydrogenase; 90.2 0.17 5.7E-06 38.2 2.8 31 136-166 11-41 (81)
98 2k7v_A Dihydrolipoyllysine-res 90.2 0.22 7.7E-06 38.0 3.5 36 88-129 38-73 (85)
99 2dne_A Dihydrolipoyllysine-res 89.8 0.37 1.3E-05 38.9 4.7 35 89-129 50-85 (108)
100 2xha_A NUSG, transcription ant 88.7 0.2 6.9E-06 44.8 2.5 46 111-162 85-158 (193)
101 4dk0_A Putative MACA; alpha-ha 87.1 0.15 5.1E-06 49.1 0.7 55 111-166 12-66 (369)
102 3our_B EIIA, phosphotransferas 86.5 1.1 3.9E-05 39.6 6.1 67 89-165 34-139 (183)
103 3n6r_A Propionyl-COA carboxyla 85.8 0.68 2.3E-05 49.0 5.0 35 132-166 612-646 (681)
104 1pmr_A Dihydrolipoyl succinylt 82.8 0.17 5.7E-06 38.2 -0.9 29 138-166 14-42 (80)
105 2gpr_A Glucose-permease IIA co 81.2 0.58 2E-05 40.3 1.8 58 103-163 87-153 (154)
106 3lu0_D DNA-directed RNA polyme 80.7 1.4 4.9E-05 49.6 5.1 35 108-144 1002-1036(1407)
107 2bco_A Succinylglutamate desuc 80.5 1 3.5E-05 43.7 3.5 49 110-165 280-328 (350)
108 3hbl_A Pyruvate carboxylase; T 80.2 1.4 4.8E-05 49.4 4.9 34 133-166 1078-1111(1150)
109 3va7_A KLLA0E08119P; carboxyla 80.1 1.5 5.1E-05 49.5 5.1 35 132-166 1167-1201(1236)
110 3bg3_A Pyruvate carboxylase, m 78.1 1.1 3.9E-05 47.6 3.2 34 133-166 650-683 (718)
111 2xhc_A Transcription antitermi 76.0 0.79 2.7E-05 44.7 1.2 51 111-162 125-198 (352)
112 3dva_I Dihydrolipoyllysine-res 75.8 0.55 1.9E-05 47.0 0.0 29 102-130 52-80 (428)
113 1f3z_A EIIA-GLC, glucose-speci 74.2 3.3 0.00011 35.8 4.6 23 108-130 97-119 (161)
114 2qf7_A Pyruvate carboxylase pr 73.6 2.2 7.7E-05 47.8 4.2 34 133-166 1096-1129(1165)
115 3u9t_A MCC alpha, methylcroton 73.6 0.68 2.3E-05 48.9 0.0 34 133-166 603-636 (675)
116 3our_B EIIA, phosphotransferas 72.1 2 7E-05 38.0 2.7 27 104-130 115-141 (183)
117 1zy8_K Pyruvate dehydrogenase 67.2 1.1 3.9E-05 40.9 0.0 28 102-129 53-81 (229)
118 1ax3_A Iiaglc, glucose permeas 66.0 3.5 0.00012 35.7 2.9 24 107-130 96-119 (162)
119 1qpo_A Quinolinate acid phosph 60.4 6.3 0.00021 37.1 3.7 24 105-128 71-94 (284)
120 1x1o_A Nicotinate-nucleotide p 58.6 6 0.0002 37.3 3.3 22 107-128 74-95 (286)
121 3tqv_A Nicotinate-nucleotide p 58.3 6.2 0.00021 37.3 3.3 22 107-128 77-98 (287)
122 3l0g_A Nicotinate-nucleotide p 57.5 6.7 0.00023 37.3 3.4 23 106-128 85-107 (300)
123 2b7n_A Probable nicotinate-nuc 56.8 7.9 0.00027 36.1 3.7 22 107-128 60-81 (273)
124 1o4u_A Type II quinolic acid p 56.1 5.7 0.00019 37.5 2.6 23 106-128 72-94 (285)
125 3gnn_A Nicotinate-nucleotide p 55.7 7.2 0.00025 37.0 3.3 22 107-128 88-109 (298)
126 3na6_A Succinylglutamate desuc 55.3 11 0.00036 36.1 4.5 35 131-166 256-290 (331)
127 3fmc_A Putative succinylglutam 55.1 8 0.00027 37.6 3.6 33 132-165 290-322 (368)
128 3paj_A Nicotinate-nucleotide p 54.2 7.8 0.00027 37.2 3.3 25 104-128 107-131 (320)
129 1brw_A PYNP, protein (pyrimidi 53.9 17 0.00058 36.2 5.8 43 126-168 329-402 (433)
130 1qap_A Quinolinic acid phospho 53.7 8 0.00027 36.6 3.3 24 105-128 85-108 (296)
131 2dsj_A Pyrimidine-nucleoside ( 52.6 17 0.00057 36.2 5.5 40 127-167 323-393 (423)
132 3it5_A Protease LASA; metallop 50.4 6.8 0.00023 34.4 2.0 21 107-127 83-103 (182)
133 3h5q_A PYNP, pyrimidine-nucleo 48.8 20 0.00068 35.8 5.4 37 128-164 334-401 (436)
134 3h5q_A PYNP, pyrimidine-nucleo 48.3 9.6 0.00033 38.1 3.0 27 103-129 377-403 (436)
135 2jbm_A Nicotinate-nucleotide p 48.2 9.3 0.00032 36.1 2.7 22 107-128 73-94 (299)
136 1brw_A PYNP, protein (pyrimidi 45.2 14 0.00049 36.8 3.7 27 104-130 375-401 (433)
137 2dsj_A Pyrimidine-nucleoside ( 44.9 14 0.00049 36.7 3.6 27 104-130 367-393 (423)
138 2tpt_A Thymidine phosphorylase 43.6 20 0.00069 35.8 4.5 42 126-167 334-406 (440)
139 1uou_A Thymidine phosphorylase 42.8 17 0.00058 36.7 3.8 24 107-130 413-436 (474)
140 1uou_A Thymidine phosphorylase 41.2 35 0.0012 34.4 5.9 42 126-167 366-436 (474)
141 2hsi_A Putative peptidase M23; 41.0 13 0.00044 34.9 2.5 21 146-166 232-252 (282)
142 3tuf_B Stage II sporulation pr 40.3 13 0.00045 34.2 2.4 20 108-127 134-153 (245)
143 1zko_A Glycine cleavage system 39.9 24 0.00083 29.4 3.7 36 88-129 73-115 (136)
144 1qwy_A Peptidoglycan hydrolase 39.6 14 0.00048 34.9 2.5 22 146-167 239-260 (291)
145 3d4r_A Domain of unknown funct 39.5 22 0.00076 30.8 3.5 41 116-167 95-135 (169)
146 3cdx_A Succinylglutamatedesucc 39.4 32 0.0011 32.9 5.1 36 129-165 264-299 (354)
147 3it5_A Protease LASA; metallop 39.4 32 0.0011 29.9 4.7 65 87-165 32-104 (182)
148 3lu0_D DNA-directed RNA polyme 36.5 7.5 0.00026 44.0 0.0 18 109-126 1107-1124(1407)
149 3c2e_A Nicotinate-nucleotide p 34.2 18 0.00061 34.1 2.2 22 107-128 69-96 (294)
150 2tpt_A Thymidine phosphorylase 34.2 15 0.0005 36.8 1.7 27 104-130 380-406 (440)
151 3nyy_A Putative glycyl-glycine 34.0 19 0.00065 33.1 2.4 19 147-165 183-201 (252)
152 2gu1_A Zinc peptidase; alpha/b 30.2 24 0.00082 34.0 2.5 22 146-167 284-305 (361)
153 1yw4_A Succinylglutamate desuc 28.2 12 0.00042 35.8 0.0 35 110-144 278-317 (341)
154 2auk_A DNA-directed RNA polyme 27.9 31 0.001 30.3 2.5 20 108-127 167-186 (190)
155 2lmc_B DNA-directed RNA polyme 27.7 7.5 0.00026 30.0 -1.3 17 108-124 66-82 (84)
156 3csq_A Morphogenesis protein 1 27.3 21 0.00072 34.1 1.5 21 108-128 250-270 (334)
157 1hpc_A H protein of the glycin 26.5 72 0.0024 26.3 4.4 32 135-166 30-62 (131)
158 3vr4_A V-type sodium ATPase ca 25.9 1.1E+02 0.0037 31.7 6.5 53 110-165 130-185 (600)
159 2gu1_A Zinc peptidase; alpha/b 25.8 63 0.0022 30.9 4.6 15 133-147 243-257 (361)
160 2qj8_A MLR6093 protein; struct 24.6 61 0.0021 30.5 4.2 33 132-165 257-289 (332)
161 3nyy_A Putative glycyl-glycine 24.0 1.2E+02 0.004 27.7 5.9 22 107-128 179-201 (252)
162 3mfy_A V-type ATP synthase alp 22.8 1.3E+02 0.0043 31.2 6.3 54 110-165 123-179 (588)
163 3tuf_B Stage II sporulation pr 21.7 1.4E+02 0.0049 27.1 5.9 57 101-166 99-155 (245)
164 4etm_A LMPTP, low molecular we 21.6 64 0.0022 27.6 3.4 33 203-239 67-99 (173)
165 1qwy_A Peptidoglycan hydrolase 20.9 2.6E+02 0.0087 26.2 7.6 13 134-146 197-209 (291)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=6.5e-56 Score=448.50 Aligned_cols=271 Identities=32% Similarity=0.493 Sum_probs=39.3
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDSA 169 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~~ 169 (372)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|.+|++|++|+.+++.
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~~ 82 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYE 82 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred CCCCC--C--CC---CCCCCCCCCCC---CCCC--C--CCCCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhh
Q 017418 170 VPTPS--S--DV---LESVKPPGSEN---SPDS--K--LNKDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (372)
Q Consensus 170 ~~~~~--~--~~---~~~~~~~~~~~---~~~~--~--~~~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~D 235 (372)
..... . .+ +.+...+...+ ..+. . .......++++||+||+||+|+||||+.|+|||++|||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~D 162 (428)
T 3dva_I 83 NMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKED 162 (428)
T ss_dssp ---------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTTT
T ss_pred ccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHHH
Confidence 21110 0 00 00000000000 0000 0 001112357899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcccccchhhhcccCcCCCCcccccccCCCCCcccccChhHHHHHHHHHhcc-cccEEEEeeeee
Q 017418 236 VLKYAVQKGAADGPSTASVSADCREQLLGEEETYPQTFAEVKWYPDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEIN 314 (372)
Q Consensus 236 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evD 314 (372)
|++|+....... +..... .... .+...........++++||++|||+||++|++|+ ++||||++.+||
T Consensus 163 V~~~~~~~~~~~-~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evD 231 (428)
T 3dva_I 163 IDAFLAGGAKPA-PAAAEE-KAAP---------AAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD 231 (428)
T ss_dssp TTTTSCC-------------------------------------------------------------------------
T ss_pred HHHHhhcccccc-cccccc-cccc---------CCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEe
Confidence 999974321110 000000 0000 0000000011123578999999999999999995 899999999999
Q ss_pred chHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 315 CDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 315 vt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
||+|+++|+++|+.++++|+||||++||+||+++||++||.||++|++++++|++++
T Consensus 232 vt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~ 288 (428)
T 3dva_I 232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKH 288 (428)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcC
Confidence 999999999999877778999999999999999999999999999998666898875
No 2
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=249.25 Aligned_cols=154 Identities=21% Similarity=0.340 Sum_probs=38.5
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCe-EecccEEEEEecCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNI-VKVGETLLKLVVGD 167 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~-v~vG~~la~i~~~~ 167 (372)
.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|++|..++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEEG 82 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEeccC
Confidence 35799999999999999999999999999999999999999999999999999999999999996 99999999997543
Q ss_pred CCCCC---CCC-CCCCC-CC--CCC--CCCCCCCCCC---CCCCCCccCChHHHHHHHHhCCCCccccCCCCCCceehhh
Q 017418 168 SAVPT---PSS-DVLES-VK--PPG--SENSPDSKLN---KDTVGGVLATPTVRNLAKLYGINLYDVDATGKDGRVLKED 235 (372)
Q Consensus 168 ~~~~~---~~~-~~~~~-~~--~~~--~~~~~~~~~~---~~~~~~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~D 235 (372)
+.... ... ..+.. .. .+. ..+..+.... ......+++||++|+||+|+||||+.|+|||++|||+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V~GTGp~GRItk~D 162 (229)
T 1zy8_K 83 EDWKHVEIPKDVGPPPPVSKPSEPRPSPEPQISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162 (229)
T ss_dssp -----------------------------------------------CBCHHHHHHHHHTTCCSSSSCCCSTTSCBCHHH
T ss_pred ccccccccccccccccccccCCCcccccccccCCCcccccccccccccCChHHHHHHHHcCCCccccCCCCCCCceehHH
Confidence 22110 000 00000 00 000 0000000000 0011246789999999999999999999999999999999
Q ss_pred HHHHHHh
Q 017418 236 VLKYAVQ 242 (372)
Q Consensus 236 V~~~~~~ 242 (372)
|++|+..
T Consensus 163 V~~~~~~ 169 (229)
T 1zy8_K 163 ALKLVQL 169 (229)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999864
No 3
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=99.83 E-value=8.6e-21 Score=180.25 Aligned_cols=91 Identities=36% Similarity=0.688 Sum_probs=83.8
Q ss_pred CCcccccChhHHHHHHHHHhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418 281 DDKTVPLRGFQRTMVKTMSMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360 (372)
Q Consensus 281 ~~~~ipls~~Rk~Ia~~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~ 360 (372)
.++++||++|||+||++|++|+++||||++.|||+|+|+++|+++|+..++.|.|+||++||+||++.||++||.||++|
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~ 109 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASV 109 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEEE
Confidence 46789999999999999999988999999999999999999999987544568999999999999999999999999999
Q ss_pred eCCCCEEEEcC
Q 017418 361 NEESLEVILKG 371 (372)
Q Consensus 361 ~~~~~eIv~~~ 371 (372)
++++++|++++
T Consensus 110 ~~~~~~i~~~~ 120 (262)
T 2ii3_A 110 DENCQNITYKA 120 (262)
T ss_dssp CTTSCEEEECS
T ss_pred eCCCCEEEEec
Confidence 97767898875
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=99.81 E-value=2.7e-20 Score=175.00 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=82.3
Q ss_pred CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418 282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360 (372)
Q Consensus 282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~ 360 (372)
.+++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.+++.|.|+||++||+||++.||++||.||++|
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~~ 94 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSL 94 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEEE
Confidence 467899999999999999995 8999999999999999999999987555568999999999999999999999999999
Q ss_pred eCCCCEEEEcC
Q 017418 361 NEESLEVILKG 371 (372)
Q Consensus 361 ~~~~~eIv~~~ 371 (372)
++++++|++++
T Consensus 95 ~~~~~~i~~~~ 105 (243)
T 1dpb_A 95 APSGQALIRKK 105 (243)
T ss_dssp CTTSSCEEECS
T ss_pred ecCCCeEEEeC
Confidence 97656898875
No 5
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.8e-20 Score=176.12 Aligned_cols=90 Identities=23% Similarity=0.535 Sum_probs=81.7
Q ss_pred CCCcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccc
Q 017418 280 PDDKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMN 357 (372)
Q Consensus 280 ~~~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lN 357 (372)
.+++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.++ ++|+|+||++||+||++.||++||.||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 34678999999999999999995 8999999999999999999999997653 358899999999999999999999999
Q ss_pred eEEeCCCCEEEEcC
Q 017418 358 SCFNEESLEVILKG 371 (372)
Q Consensus 358 a~~~~~~~eIv~~~ 371 (372)
++|+++ +|++++
T Consensus 96 a~~~~~--~i~~~~ 107 (256)
T 3mae_A 96 STWAGD--KIIEHA 107 (256)
T ss_dssp EEEETT--EEEECS
T ss_pred hEEecC--EEEEcC
Confidence 999865 788875
No 6
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=99.80 E-value=2.9e-20 Score=172.86 Aligned_cols=87 Identities=25% Similarity=0.481 Sum_probs=79.6
Q ss_pred CCcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418 281 DDKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (372)
Q Consensus 281 ~~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~ 359 (372)
+++++||++|||+||++|++| +++||||++.|||+|+|+++|+++|+. |.|+||++||+||++.||++||.||++
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~----g~kls~~~~~ikA~~~Al~~~P~~N~~ 80 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR----NRKVTVTGFLARIVPSILKQYPYLNAI 80 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT----TCCCCHHHHHHHHHHHHHHHSGGGSBB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhCHHhheE
Confidence 356899999999999999999 589999999999999999999999863 889999999999999999999999999
Q ss_pred EeCCCCEEEEcC
Q 017418 360 FNEESLEVILKG 371 (372)
Q Consensus 360 ~~~~~~eIv~~~ 371 (372)
|++++++|++++
T Consensus 81 ~~~~~~~i~~~~ 92 (224)
T 3rqc_A 81 YDETRRVYILKK 92 (224)
T ss_dssp CCSSTTCCCEEC
T ss_pred EeCCCCEEEEeC
Confidence 988766788764
No 7
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=99.80 E-value=1.6e-19 Score=170.44 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=77.4
Q ss_pred cccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEe
Q 017418 283 KTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFN 361 (372)
Q Consensus 283 ~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~ 361 (372)
++ ||++|||+||++|++|+ ++||||++.|||||+|+++|+++|+ .|.|+||++||+||++.||++||.||++|+
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~----~~~kls~~~~iikAva~AL~~~P~~Na~~~ 90 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS----AAPEITPFALTLRLLVIALKHNVILNSTWV 90 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEe
Confidence 45 99999999999999996 8999999999999999999999974 478999999999999999999999999998
Q ss_pred CC--CCEEEEcC
Q 017418 362 EE--SLEVILKG 371 (372)
Q Consensus 362 ~~--~~eIv~~~ 371 (372)
++ +++|++++
T Consensus 91 ~~~~~~~i~~~~ 102 (250)
T 3l60_A 91 DSGEGPQVHVHR 102 (250)
T ss_dssp CTTTSCEEEECS
T ss_pred ccCCCCeEEEcC
Confidence 75 45898875
No 8
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=99.79 E-value=7.4e-20 Score=171.04 Aligned_cols=88 Identities=17% Similarity=0.411 Sum_probs=79.5
Q ss_pred CcccccChhHHHHHHHHHhcc-cccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceE
Q 017418 282 DKTVPLRGFQRTMVKTMSMAA-KIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSC 359 (372)
Q Consensus 282 ~~~ipls~~Rk~Ia~~M~~S~-~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~ 359 (372)
++++||++|||+||++|++|+ ++||||++.|||+|+|+++|+++|+.+. +.|.|+||++||+||++.||++||.+|++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 456899999999999999995 7999999999999999999999987542 45889999999999999999999999999
Q ss_pred EeCCCCEEEEcC
Q 017418 360 FNEESLEVILKG 371 (372)
Q Consensus 360 ~~~~~~eIv~~~ 371 (372)
|+++ +|++++
T Consensus 84 ~~~~--~i~~~~ 93 (233)
T 1scz_A 84 IDGD--DVVYHN 93 (233)
T ss_dssp EETT--EEECCS
T ss_pred EeCC--EEEEeC
Confidence 9854 788774
No 9
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.78 E-value=2.5e-18 Score=136.67 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=75.8
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 167 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~ 167 (372)
.++|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|+.|...+
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 5789999999999999999999999999999999999999999999999999999999999999 899999999998644
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.77 E-value=1.7e-18 Score=139.65 Aligned_cols=81 Identities=40% Similarity=0.728 Sum_probs=77.2
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+++|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+.|..|++|+.|+..+
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 017418 168 S 168 (372)
Q Consensus 168 ~ 168 (372)
.
T Consensus 83 ~ 83 (93)
T 1k8m_A 83 L 83 (93)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.77 E-value=2.3e-18 Score=146.71 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=76.1
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEEEecCC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLKLVVGD 167 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~i~~~~ 167 (372)
.++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|+..+
T Consensus 27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 5889999999999999999999999999999999999999999999999999999999999998 899999999998654
No 12
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=139.02 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=76.8
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeE-ecccEEEEEecC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIV-KVGETLLKLVVG 166 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v-~vG~~la~i~~~ 166 (372)
..++|+||++|++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|+.|...
T Consensus 6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 3568999999999999999999999999999999999999999999999999999999999999998 999999999865
Q ss_pred CC
Q 017418 167 DS 168 (372)
Q Consensus 167 ~~ 168 (372)
++
T Consensus 86 ~~ 87 (98)
T 2dnc_A 86 GE 87 (98)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 13
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.74 E-value=8.5e-18 Score=139.23 Aligned_cols=82 Identities=28% Similarity=0.338 Sum_probs=77.1
Q ss_pred CCCCceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCC-eEecccEEEE
Q 017418 84 LPASGIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGN-IVKVGETLLK 162 (372)
Q Consensus 84 ~~~~~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~-~v~vG~~la~ 162 (372)
+|| .++|+||++|++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++
T Consensus 4 ~p~--~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~ 81 (108)
T 2dne_A 4 GSS--GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICI 81 (108)
T ss_dssp CCC--CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEE
T ss_pred Ccc--ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEE
Confidence 455 4789999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EecCC
Q 017418 163 LVVGD 167 (372)
Q Consensus 163 i~~~~ 167 (372)
|...+
T Consensus 82 i~~~~ 86 (108)
T 2dne_A 82 TVGKP 86 (108)
T ss_dssp EESCH
T ss_pred EecCc
Confidence 98643
No 14
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=99.74 E-value=4.6e-19 Score=166.24 Aligned_cols=87 Identities=16% Similarity=0.265 Sum_probs=77.7
Q ss_pred CcccccChhHHHHHHHHHhc-ccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEE
Q 017418 282 DKTVPLRGFQRTMVKTMSMA-AKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCF 360 (372)
Q Consensus 282 ~~~ipls~~Rk~Ia~~M~~S-~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~ 360 (372)
.+++||++|||+||++|++| +++||||++.|||+|+|+++|+++|+.++.. .|+||++||+||++.||++||.||++|
T Consensus 12 ~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~-~kls~~~~~ikAv~~Al~~~P~~Na~~ 90 (239)
T 3b8k_A 12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-SKISVNDFIIKASALACLKVPEANSSW 90 (239)
T ss_dssp CCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTS-SCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred ceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhcc-CCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence 46789999999999999999 5899999999999999999999998755433 699999999999999999999999999
Q ss_pred eCCCCEEEEcC
Q 017418 361 NEESLEVILKG 371 (372)
Q Consensus 361 ~~~~~eIv~~~ 371 (372)
+++ +|++++
T Consensus 91 ~~~--~i~~~~ 99 (239)
T 3b8k_A 91 MDT--VIRQNH 99 (239)
T ss_dssp CCC--SSSCSC
T ss_pred ECC--EEEEeC
Confidence 864 576653
No 15
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.73 E-value=1.3e-17 Score=129.77 Aligned_cols=76 Identities=25% Similarity=0.460 Sum_probs=73.8
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
++|.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999864
No 16
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.68 E-value=7.4e-17 Score=124.78 Aligned_cols=75 Identities=41% Similarity=0.695 Sum_probs=73.1
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
++|.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999985
No 17
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.66 E-value=5e-18 Score=132.64 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=73.2
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
++|.||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999864
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.66 E-value=2.1e-16 Score=122.97 Aligned_cols=76 Identities=30% Similarity=0.469 Sum_probs=72.8
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
++|.||++|++ +|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~~ 78 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEccC
Confidence 57999999998 99999999999999999999999999999999999999999999999999999999999998643
No 19
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.64 E-value=1.2e-15 Score=118.69 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=71.0
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
++|.||++|++ + +|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...+
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 46899999996 7 999999999999999999999999999999999999999999999999999999999997543
No 20
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.61 E-value=3.8e-16 Score=121.90 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=73.1
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.++|.||++| ++..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.|...
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 4578999999 7899999999999999999999999999999999999999999999999999999999999999753
No 21
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.46 E-value=5.7e-15 Score=116.59 Aligned_cols=71 Identities=30% Similarity=0.465 Sum_probs=67.5
Q ss_pred EEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 91 DVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+|.+|.+ |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++.+|+.|..|++|+.|...+
T Consensus 4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECCS
T ss_pred EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5788887 9999999999999999999999999999999999999999999999999999999999998654
No 22
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.42 E-value=8.5e-13 Score=100.10 Aligned_cols=63 Identities=33% Similarity=0.431 Sum_probs=61.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++++.+|+.|..|++|+.|..
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 799999999999999999999999999999999999999999999999999999999999865
No 23
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=105.24 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=61.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.+++ .+|+.|..|++|+.|...+
T Consensus 13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 799999999999999999999999999999999999999999999 9999999999999997543
No 24
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3e-12 Score=104.01 Aligned_cols=63 Identities=17% Similarity=0.402 Sum_probs=60.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+.|..|++|+.|...
T Consensus 25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELD 87 (100)
T ss_dssp CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence 799999999999999999999999999999999999999999 999999999999999999754
No 25
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.35 E-value=3.9e-12 Score=97.72 Aligned_cols=71 Identities=28% Similarity=0.390 Sum_probs=65.2
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
+...|.-|. .|+|.+|++++||.|++||+|++++++|+..+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus 7 ~~~~v~a~~------~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 7 GEGEIPAPL------AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CSSEEEBSS------SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCeEEECCC------CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 444566554 79999999999999999999999999999999999999999999999999999999999874
No 26
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.34 E-value=2.8e-13 Score=109.03 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=28.8
Q ss_pred eEEEEccCCCCCc----ceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 89 IVDVPLAQTGEGI----AECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 89 ~~~i~~P~lg~~~----~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
...|.+|...+.. ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus 15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 3467888887654 589999999999999999999999999999999999999999999999999999999998874
No 27
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.32 E-value=6.9e-12 Score=95.29 Aligned_cols=62 Identities=29% Similarity=0.391 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|.+|++++||.|++||+|++++++|...+|+||++|+|.++++.+|+.|..|++|+.|+
T Consensus 13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 79999999999999999999999999999999999999999999999999999999999874
No 28
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.31 E-value=6.9e-12 Score=97.32 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=58.7
Q ss_pred eEEEEE-------EEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLK-------WFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~-------w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|.+ |++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 577777 59999999999999999999999999999999999999999999999999999874
No 29
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.30 E-value=1.5e-12 Score=144.67 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHhcccccEEEEeeeeechHHHHHHHHhhccCC-CCCCccchhHHHHHHHHHHHhhcCccceEEeCCC--CEEEEcC
Q 017418 297 TMSMAAKIPHFHYVEEINCDALVKLKASFQNNNS-DPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEES--LEVILKG 371 (372)
Q Consensus 297 ~M~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~-~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~--~eIv~~~ 371 (372)
+|++|+++||||++.+||||+|+++|+++|+.++ +.|+||||++||+||++.||++||.||++|++++ .+|++++
T Consensus 1 ~m~~S~~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~ 78 (1113)
T 2xt6_A 1 GMNASLEVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPA 78 (1113)
T ss_dssp ------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCS
T ss_pred ChhhhccCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeC
Confidence 6888989999999999999999999999997553 5689999999999999999999999999998653 2688764
No 30
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.30 E-value=3.6e-12 Score=117.86 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=55.6
Q ss_pred HhcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 299 SMAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 299 ~~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
-.+.++||||++.|||||+|+++|++ .|+||++||+|||+.||++||.+|++|+++ +|++++
T Consensus 25 f~~~~~P~~t~~~evDvt~l~~~rk~---------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~ 86 (219)
T 1q23_A 25 FQSVAQCTYNQTVQLDITAFLKTVKK---------NKHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWD 86 (219)
T ss_dssp HTTTTCEEEEEEEEEECHHHHHHHHH---------TTCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred hcCCCCcEEEEEEEEEhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEec
Confidence 35568999999999999999999975 279999999999999999999999999854 788875
No 31
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=100.16 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=62.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCCC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~~ 168 (372)
.|+|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++.+|+.|..|++|+.|...+.
T Consensus 22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 799999999999999999999999999999999999999999999999999999999999976443
No 32
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.27 E-value=5.7e-12 Score=116.01 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=54.6
Q ss_pred hcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 300 ~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
.+.++||||++.|||||+|+++|++ .|+||++||+|||+.||++||.+|++|+++ +|++++
T Consensus 21 ~~~~~P~~~~~~evDvt~l~~~rk~---------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~ 81 (213)
T 3cla_A 21 RHRLPCGFSLTSKIDITTLKKSLDD---------SAYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWD 81 (213)
T ss_dssp HHTSCCEEEEEEEEECHHHHHHHHT---------SSCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred hCCCCceEEEEEEEEHHHHHHHHHH---------hCCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEe
Confidence 4467999999999999999999963 379999999999999999999999999854 788875
No 33
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.26 E-value=3.5e-12 Score=87.13 Aligned_cols=38 Identities=47% Similarity=0.665 Sum_probs=36.5
Q ss_pred cCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (372)
Q Consensus 203 ~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~ 240 (372)
.+||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus 2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 39 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYA 39 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHH
T ss_pred CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHh
Confidence 57999999999999999999999999999999999986
No 34
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.24 E-value=4.8e-12 Score=86.03 Aligned_cols=37 Identities=41% Similarity=0.681 Sum_probs=35.8
Q ss_pred CChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (372)
Q Consensus 204 asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~ 240 (372)
+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999886
No 35
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.1e-11 Score=114.52 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=55.0
Q ss_pred hcccccEEEEeeeeechHHHHHHHHhhccCCCCCCccchhHHHHHHHHHHHhhcCccceEEeCCCCEEEEcC
Q 017418 300 MAAKIPHFHYVEEINCDALVKLKASFQNNNSDPNIKHTFLPSLIKSLSMAMSKYPFMNSCFNEESLEVILKG 371 (372)
Q Consensus 300 ~S~~iPh~t~~~evDvt~L~~lR~~lk~~~~~~gvklS~~~fiiKAva~ALk~~P~lNa~~~~~~~eIv~~~ 371 (372)
.+.++||||++.|||||+|+++|++. |+||++||+|||+.||++||.+|++|++ +++|++++
T Consensus 23 ~~~~~P~~~~~~evDvt~l~~~rk~~---------~ls~~~~~ikAv~~Al~~~P~~n~~~~~-~~~i~~~~ 84 (217)
T 2i9d_A 23 RHFQNPQLSITSEVECGGARQRAKAA---------GQSFFLHYLYAVLRAANEIPEFRYRIDP-DGRVVLYD 84 (217)
T ss_dssp TTCSBCEEEEEEEEECHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHSGGGGEEECT-TSCEEEES
T ss_pred hCCCCceEEEEEEEEhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhCHHhheEEcC-CCEEEEec
Confidence 44689999999999999999999752 7999999999999999999999999983 34788875
No 36
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.22 E-value=5.3e-12 Score=92.75 Aligned_cols=42 Identities=55% Similarity=0.791 Sum_probs=38.9
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~ 242 (372)
.+.+||+||+||+++||||+.|+|||++|||+++||++|+..
T Consensus 7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 577999999999999999999999999999999999999753
No 37
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.22 E-value=4.3e-12 Score=86.25 Aligned_cols=37 Identities=38% Similarity=0.602 Sum_probs=34.9
Q ss_pred CChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418 204 ATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (372)
Q Consensus 204 asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~ 240 (372)
+||++|+||+++|||++.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6999999999999999999999999999999999875
No 38
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.16 E-value=5.1e-11 Score=126.79 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=60.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999884
No 39
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.15 E-value=2.1e-11 Score=86.54 Aligned_cols=40 Identities=45% Similarity=0.718 Sum_probs=37.9
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~ 240 (372)
.+.+||++|+||+++||||+.|.|||++|||+++||++|+
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~ 45 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFL 45 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHH
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHH
Confidence 4568999999999999999999999999999999999997
No 40
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=99.14 E-value=3.7e-11 Score=89.53 Aligned_cols=42 Identities=45% Similarity=0.632 Sum_probs=39.2
Q ss_pred ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHhc
Q 017418 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQK 243 (372)
Q Consensus 202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~~ 243 (372)
+.+||++|+||+++||||+.|.|||++|||+++||++|+...
T Consensus 5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~ 46 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEET 46 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhcc
Confidence 568999999999999999999999999999999999998644
No 41
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.11 E-value=2e-11 Score=87.41 Aligned_cols=40 Identities=28% Similarity=0.394 Sum_probs=37.5
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHH
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYA 240 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~ 240 (372)
.+.+||++|+||+++||||+.|.|||++|||+++||++|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 4678999999999999999999999999999999999875
No 42
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.09 E-value=2.5e-10 Score=128.28 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=59.9
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
.|+|.+|+|++||.|++||+||+||+||++++|+||++|+|.++++++|+.|.+|++|++|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 5999999999999999999999999999999999999999999999999999999999987
No 43
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.08 E-value=2.2e-10 Score=128.05 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+...|.-|- .|+|++|+|++||.|++||+|++||+||++++|+||++|+|.++++++|+.|.+|++|+.|+.+
T Consensus 1076 ~~~~v~ap~------~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1076 NPSHIGAQM------PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp CSSEEECSS------SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred CCceeecCc------eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 344566554 7999999999999999999999999999999999999999999999999999999999999753
No 44
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=87.66 Aligned_cols=42 Identities=52% Similarity=0.763 Sum_probs=39.2
Q ss_pred CccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418 201 GVLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (372)
Q Consensus 201 ~~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~ 242 (372)
.+.++|+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 456899999999999999999999999999999999999864
No 45
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.05 E-value=1.8e-11 Score=130.17 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=0.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 610 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 610 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEecC
Confidence 6999999999999999999999999999999999999999999999999999999999999754
No 46
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=99.04 E-value=7.9e-11 Score=88.22 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=38.5
Q ss_pred ccCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHHHHh
Q 017418 202 VLATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKYAVQ 242 (372)
Q Consensus 202 ~~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~~~~ 242 (372)
+.+||+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus 10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 56899999999999999999999999999999999999854
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.89 E-value=1.8e-09 Score=89.30 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=59.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCcee-----------------------------eEEecCCCeEEEEEccCCCCe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKAT-----------------------------IEITSRYKGKVAQLLHAPGNI 153 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~-----------------------------~ei~ap~~G~v~~i~~~eg~~ 153 (372)
.|+|.+|+|++||.|++||+|+++++.++. ..|+||++|+|..+.+.+|+.
T Consensus 9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~ 88 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY 88 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence 799999999999999999999999988654 489999999999999999999
Q ss_pred Eecc-cEEEEEecCC
Q 017418 154 VKVG-ETLLKLVVGD 167 (372)
Q Consensus 154 v~vG-~~la~i~~~~ 167 (372)
|..| ++|+.|...+
T Consensus 89 v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 89 VSASTTELVRVTNLN 103 (116)
T ss_dssp ECTTTSCCEEEECSC
T ss_pred EcCCCcEEEEEECCC
Confidence 9999 9999997543
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.82 E-value=1.2e-09 Score=116.46 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=60.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
.|+|++|+|++||.|++||+|++||+||++.+|+||++|+|.++++++|+.|..|++|+.|+
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 79999999999999999999999999999999999999999999999999999999999873
No 49
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.76 E-value=5e-09 Score=117.34 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=57.7
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEe
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~ 164 (372)
..|.-|- .|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1096 ~~v~ap~------~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1096 AHVGAPM------PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TEEECSS------CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred ceeeCCC------CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 4455554 79999999999999999999999999999999999999999999999999999999999875
No 50
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.72 E-value=1.4e-08 Score=86.96 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=59.9
Q ss_pred EEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEE---ccCCCCeEe---ccc-EEEE
Q 017418 91 DVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQL---LHAPGNIVK---VGE-TLLK 162 (372)
Q Consensus 91 ~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i---~~~eg~~v~---vG~-~la~ 162 (372)
.+.+|.+|+ |+.+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++ ++..++.|. .|+ .|+.
T Consensus 38 ~~a~~~lG~------i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~ 111 (136)
T 1zko_A 38 NHAQEQLGD------VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFK 111 (136)
T ss_dssp HHHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred hhhcccCCC------cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEE
Confidence 345666543 555544 99999999999999999999999999999999999 888999988 888 8999
Q ss_pred EecCC
Q 017418 163 LVVGD 167 (372)
Q Consensus 163 i~~~~ 167 (372)
|...+
T Consensus 112 i~~~~ 116 (136)
T 1zko_A 112 MEISD 116 (136)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 88543
No 51
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.29 E-value=3.9e-07 Score=77.51 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=53.6
Q ss_pred EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC---CeEe---ccc-EEE
Q 017418 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLL 161 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg---~~v~---vG~-~la 161 (372)
.++.+|.+| .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++...+ +.|. -|+ -|+
T Consensus 28 td~a~~~lG------~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (131)
T 1hpc_A 28 TDHAQDHLG------EVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMI 101 (131)
T ss_dssp CHHHHHHHC------SEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred ehhhcccCC------CceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEE
Confidence 334556654 4666655 9999999999999999999999999999999999975543 3442 344 677
Q ss_pred EEecC
Q 017418 162 KLVVG 166 (372)
Q Consensus 162 ~i~~~ 166 (372)
.|...
T Consensus 102 ~i~~~ 106 (131)
T 1hpc_A 102 KIKPT 106 (131)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 66643
No 52
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.27 E-value=1e-06 Score=74.68 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCC---CeEe---ccc-EEE
Q 017418 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPG---NIVK---VGE-TLL 161 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg---~~v~---vG~-~la 161 (372)
.++.+|.+| .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++...+ +.|. -|+ -|+
T Consensus 29 td~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~ 102 (128)
T 3a7l_A 29 TEHAQELLG------DMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIF 102 (128)
T ss_dssp CHHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred ehHHhccCC------ceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEE
Confidence 344566664 3555544 9999999999999999999999999999999999976443 3333 344 666
Q ss_pred EEecC
Q 017418 162 KLVVG 166 (372)
Q Consensus 162 ~i~~~ 166 (372)
.|...
T Consensus 103 ~i~~~ 107 (128)
T 3a7l_A 103 KIKAS 107 (128)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 66643
No 53
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.21 E-value=1.9e-06 Score=73.06 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=53.7
Q ss_pred EEEEccCCCCCcceEEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC---CCCeE---eccc-EEE
Q 017418 90 VDVPLAQTGEGIAECELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA---PGNIV---KVGE-TLL 161 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~---eg~~v---~vG~-~la 161 (372)
.++..|.+| .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++.. ..+.| +-|+ -|+
T Consensus 28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~ 101 (128)
T 1onl_A 28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIF 101 (128)
T ss_dssp CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCE
T ss_pred ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEE
Confidence 334456654 3555544 99999999999999999999999999999999999754 34444 4555 677
Q ss_pred EEecC
Q 017418 162 KLVVG 166 (372)
Q Consensus 162 ~i~~~ 166 (372)
.|...
T Consensus 102 ~i~~~ 106 (128)
T 1onl_A 102 RLKPR 106 (128)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77643
No 54
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.05 E-value=5.5e-06 Score=80.51 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=57.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.+++|++||.|++||+|+++++...
T Consensus 65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~ 144 (359)
T 3lnn_A 65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE 144 (359)
T ss_dssp CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999997532
Q ss_pred -------------------------eeEEecCCCeEEEEEccCCCCeEec-ccEEEEEecC
Q 017418 132 -------------------------TIEITSRYKGKVAQLLHAPGNIVKV-GETLLKLVVG 166 (372)
Q Consensus 132 -------------------------~~ei~ap~~G~v~~i~~~eg~~v~v-G~~la~i~~~ 166 (372)
...|+||++|+|..+.+..|+.|.. |++|+.|...
T Consensus 145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 2579999999999999999999999 9999988753
No 55
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.05 E-value=6.6e-06 Score=82.24 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=57.0
Q ss_pred eEEEEEEEc-CCCCeecCCCeEEEEEeC------------------------------------------------ceee
Q 017418 103 ECELLKWFV-KEGDEIEEFQPLCAVQSD------------------------------------------------KATI 133 (372)
Q Consensus 103 eG~I~~w~v-~eGd~V~~Gd~l~~vetd------------------------------------------------K~~~ 133 (372)
.|.|.+++| ++||.|++||+|+++++. ....
T Consensus 129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 208 (413)
T 3ne5_B 129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF 208 (413)
T ss_dssp CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence 799999998 999999999999999952 1246
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+||++|+|.++.+.+|+.|..|++|+.|..
T Consensus 209 ~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~ 240 (413)
T 3ne5_B 209 TLKAPIDGVITAFDLRAGMNIAKDNVVAKIQG 240 (413)
T ss_dssp EEECSSSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred EEEcCCCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence 89999999999999999999999999999864
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.03 E-value=1.8e-06 Score=81.05 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=56.6
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCc----------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDK---------------------------------------------------- 130 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK---------------------------------------------------- 130 (372)
.|+|.+|+|++||.|++||+|+++++..
T Consensus 30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~ 109 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 109 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 7999999999999999999999998642
Q ss_pred -------------------eeeEEecCCCeEEEEEccCCCCeEecc--cEEEEEecC
Q 017418 131 -------------------ATIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVVG 166 (372)
Q Consensus 131 -------------------~~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~~ 166 (372)
....|+||++|+|..+.+.+|+.|..| ++|+.|...
T Consensus 110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence 124799999999999999999999999 589988653
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.99 E-value=6.5e-06 Score=79.45 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=55.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.+++|++||.|++||+|+++++...
T Consensus 39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 118 (341)
T 3fpp_A 39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN 118 (341)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence 79999999999999999999999987410
Q ss_pred ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccE---EEEEec
Q 017418 132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLVV 165 (372)
Q Consensus 132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~---la~i~~ 165 (372)
...|+||++|+|..+.+..|+.|..|++ |+.|..
T Consensus 119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLAD 189 (341)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEec
Confidence 1459999999999999999999999987 887764
No 58
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.75 E-value=1e-05 Score=79.35 Aligned_cols=63 Identities=19% Similarity=0.317 Sum_probs=56.0
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.+++|++||.|++||+|++|++...
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999986321
Q ss_pred ------eeEEecCCCeEEEEEccCCCCeEecc--cEEEEEec
Q 017418 132 ------TIEITSRYKGKVAQLLHAPGNIVKVG--ETLLKLVV 165 (372)
Q Consensus 132 ------~~ei~ap~~G~v~~i~~~eg~~v~vG--~~la~i~~ 165 (372)
...|+||++|+|..+.+.+|+.|..| ++|+.|..
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~ 172 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQ 172 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEEC
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEec
Confidence 25799999999999999999999995 88998864
No 59
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.71 E-value=5.2e-05 Score=63.85 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=40.3
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccC
Q 017418 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHA 149 (372)
Q Consensus 104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~ 149 (372)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++...
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~ 78 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence 55666644 78999999999999999999999999999999998643
No 60
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.59 E-value=9.2e-05 Score=63.59 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=39.4
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEcc
Q 017418 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLH 148 (372)
Q Consensus 104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~ 148 (372)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.-
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~ 99 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINA 99 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 55555533 7899999999999999999999999999999998863
No 61
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.52 E-value=9.7e-05 Score=63.09 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=39.0
Q ss_pred EEEEEEEc-CCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKWFV-KEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w~v-~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 55655533 789999999999999999999999999999999985
No 62
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.31 E-value=1.1e-05 Score=78.69 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=53.8
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce---------------------------------------------------
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------------------------------------------------- 131 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------------------------------------------------- 131 (372)
.|+|.+++|++||.|++||+|+++++...
T Consensus 40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~ 119 (369)
T 4dk0_A 40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT 119 (369)
T ss_dssp CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence 69999999999999999999999986421
Q ss_pred ----------------------------------eeEEecCCCeEEEEEccCCCCeEecccE---EEEEe
Q 017418 132 ----------------------------------TIEITSRYKGKVAQLLHAPGNIVKVGET---LLKLV 164 (372)
Q Consensus 132 ----------------------------------~~ei~ap~~G~v~~i~~~eg~~v~vG~~---la~i~ 164 (372)
...|+||++|+|..+.+.+|+.|..|++ |+.|.
T Consensus 120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 1349999999999999999999999998 65554
No 63
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.29 E-value=0.00036 Score=60.61 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=38.6
Q ss_pred EEEEEEE-cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEc
Q 017418 104 CELLKWF-VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLL 147 (372)
Q Consensus 104 G~I~~w~-v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~ 147 (372)
|.|+-+. -++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus 59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 5555553 3789999999999999999999999999999998886
No 64
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.81 E-value=0.0025 Score=61.81 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=50.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.| +...+++.||.|++||+|++|.. .....+|+||.+|+|... ...-.|..|+.|+.|...
T Consensus 265 ~G-l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DG-LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp CE-EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred Ce-EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 45 66778999999999999999986 356789999999999554 456788899999998753
No 65
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.70 E-value=0.0031 Score=61.71 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=52.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.| +++..++.||.|++||+|+.|.. .+...+|.||.+|+|... .....|..|+.|+.|...
T Consensus 275 ~G-~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 275 TG-LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMED 339 (354)
T ss_dssp CE-EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEE
T ss_pred CE-EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeee
Confidence 45 77888999999999999999987 478899999999999655 577889999999999754
No 66
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.64 E-value=0.004 Score=61.32 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe------CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS------DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet------dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+=|...+++.||.|++||+|++|-. .....+|+||.+|+|. .....-.|..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASASVHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSSEECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCCccCCCCEEEEEee
Confidence 4455689999999999999999987 4577899999999994 4456678999999988864
No 67
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00098 Score=53.34 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 120 FQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 120 Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
|..+|.++.++....|.||.+|+|.++++++|+.|..|++|+.++.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEe
Confidence 5566888888888899999999999999999999999999999985
No 68
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.93 E-value=0.0087 Score=44.16 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 134 EITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 134 ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 378999999999999999999999999999864
No 69
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.85 E-value=0.012 Score=43.58 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=31.5
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.|+.+|+|.++++++|+.|+.|++|+.++..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4689999999999999999999999999999863
No 70
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.81 E-value=0.01 Score=44.45 Aligned_cols=35 Identities=34% Similarity=0.458 Sum_probs=32.1
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 35789999999999999999999999999999863
No 71
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.55 E-value=0.014 Score=47.36 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=31.8
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.|.|+.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5789999999999999999999999999999854
No 72
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.47 E-value=0.016 Score=50.21 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=55.3
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------- 146 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------- 146 (372)
..|.-|- .|+|+.+. +..|.|-. |+.++...++ ..+.||++|+|..+
T Consensus 8 ~~i~aP~------~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 8 LKVLAPC------DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEEECSS------SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred CEEEecC------CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 4566665 89999974 88888766 8999988776 48999999999874
Q ss_pred ----------------ccCCCCeEecccEEEEEec
Q 017418 147 ----------------LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ----------------~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|..|++|+.++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECH
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECH
Confidence 8899999999999999873
No 73
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=95.45 E-value=0.021 Score=49.83 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=55.5
Q ss_pred EEEEccCCCCCcceEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE-------------------
Q 017418 90 VDVPLAQTGEGIAECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL------------------- 146 (372)
Q Consensus 90 ~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------- 146 (372)
..|.-|- .|+|+.+. +..|.|-. |+.++..-++ ..++||++|+|..+
T Consensus 13 ~~i~aP~------~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi 82 (161)
T 1f3z_A 13 IEIIAPL------SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFV 82 (161)
T ss_dssp EEEECSS------CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEEecC------CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEE
Confidence 3466665 89999975 78888766 8999987776 47899999999988
Q ss_pred ----------------ccCCCCeEecccEEEEEec
Q 017418 147 ----------------LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ----------------~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|..|++|+.++.
T Consensus 83 HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 83 HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred EECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 8899999999999999973
No 74
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=95.36 E-value=0.027 Score=54.28 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=47.8
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe----CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS----DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet----dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
+-+...+++.|+.|++||+|+++-. .+...+|.||.+|+|.-. ...-.|..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAMYVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSEEECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCCeeCCCCEEEEEee
Confidence 3355577999999999999999954 467789999999999544 45667888888888764
No 75
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.01 E-value=0.013 Score=45.08 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=31.5
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||.+|+|.++++++|+.|..|++|+.|+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 39 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 39 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEECS
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEec
Confidence 4799999999999999999999999999999853
No 76
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=94.98 E-value=0.019 Score=50.15 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=50.9
Q ss_pred eEEEEEEEcCCCCeecC----CCeEEEEEeCceeeEEecCCCeEEEEE--------------------------------
Q 017418 103 ECELLKWFVKEGDEIEE----FQPLCAVQSDKATIEITSRYKGKVAQL-------------------------------- 146 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~----Gd~l~~vetdK~~~ei~ap~~G~v~~i-------------------------------- 146 (372)
.|+|+.+ .+..|.|-. |+.++..-++ ..++||++|+|..+
T Consensus 20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g 95 (162)
T 1ax3_A 20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG 95 (162)
T ss_dssp SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence 7999997 778888766 8999977764 47899999999988
Q ss_pred ---ccCCCCeEecccEEEEEec
Q 017418 147 ---LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ---~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|..|++|+.++.
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 96 FTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp EEESCCCCSEECSEEEEEEECH
T ss_pred cEEEEeCCCEEcCCCEEEEECH
Confidence 8889999999999999974
No 77
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=94.26 E-value=0.046 Score=50.66 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=38.7
Q ss_pred CCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 113 EGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 113 eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+.
T Consensus 4 ~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 55 (277)
T 2f1m_A 4 TEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 55 (277)
T ss_dssp ------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred eeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECc
Confidence 33333334445667664 46789999999999999999999999999999975
No 78
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.93 E-value=0.05 Score=48.78 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.5
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 144 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~ 144 (372)
.++|++|+.|++||.||+-. .|-+.++|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 67899999999999999865 77788888774
No 79
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=93.87 E-value=0.045 Score=43.42 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=32.4
Q ss_pred eeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 131 ~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
-...|.++.+|+|.++++++|+.|..|++|+.|+..
T Consensus 13 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 13 TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp CCSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred CceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence 345689999999999999999999999999999853
No 80
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=93.77 E-value=0.049 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=31.2
Q ss_pred eEEecCCCeEEEEE-------ccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQL-------LHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i-------~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++ ++++|+.|..|++|+.|+..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence 46899999999998 89999999999999999864
No 81
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=93.52 E-value=0.031 Score=44.00 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=31.6
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 45689999999999999999999999999999853
No 82
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=93.51 E-value=0.053 Score=52.12 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=43.5
Q ss_pred CCCCeecCCCeEEEEEeC-ceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 112 KEGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 112 ~eGd~V~~Gd~l~~vetd-K~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 333333333455677765 5678999999999999999999999999999999864
No 83
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=93.33 E-value=0.086 Score=39.38 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.7
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.|+|.++++++||.|..|++|+.|++
T Consensus 52 ~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 52 RGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 89999999999999999999999874
No 84
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=93.26 E-value=0.091 Score=50.09 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=41.7
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4444444443445566655 467899999999999999999999999999999754
No 85
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.06 E-value=0.16 Score=38.06 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=29.4
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
..+|.-|. .|+|.++++++||.|..|++|+.|+.
T Consensus 44 ~~~i~Ap~------~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 44 VMEVLAEA------DGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEEECSS------CEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eEEEEcCC------CEEEEEEEcCCcCEECCCCEEEEEec
Confidence 45566665 89999999999999999999999875
No 86
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=92.94 E-value=0.17 Score=38.98 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGD-EIEEFQPLCAVQSD 129 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd-~V~~Gd~l~~vetd 129 (372)
..+|.-|. .|+|.++++++|| .|..|++|+.|+..
T Consensus 48 ~~~i~Ap~------~G~v~~~~v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 48 TIGFEVQE------EGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp EEEEECCS------CEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred cceeecCc------CcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence 45566665 8999999999999 89999999999864
No 87
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=92.65 E-value=0.11 Score=38.96 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.5
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
..+|.-|. .|+|.++++++||.|..|++|+.|+..
T Consensus 43 ~~~i~Ap~------~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 43 SMEVPAPF------AGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CEEEEBSS------CEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eEEEeCCC------CEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 45677776 899999999999999999999999853
No 88
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=92.33 E-value=0.14 Score=44.63 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCceee-EEecCCCeEEEEEc
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKATI-EITSRYKGKVAQLL 147 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~-ei~ap~~G~v~~i~ 147 (372)
||.-+-..+.+||.|.+||.|+-|.|.|-++ -++||.+|+|.-+.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 7778888999999999999999999999875 49999999997665
No 89
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=92.16 E-value=0.19 Score=39.33 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=25.3
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
.|+|.++++++||.|..|++|+.|+..
T Consensus 55 ~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 55 DGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp CEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 899999999999999999999999853
No 90
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=91.63 E-value=0.24 Score=44.24 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=41.2
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEec
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKV 156 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~v 156 (372)
.++|++||.|++||.||+. |..+..|-+.++|+|.--.+.+|.++..
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t~~e 109 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQTITR 109 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTTEEE
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcceEE
Confidence 6799999999999999977 7999999999999998777788766553
No 91
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=91.60 E-value=0.16 Score=49.64 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.5
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 144 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~ 144 (372)
.++|++||.|++||.||+-+ .|-+..+|+|.
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~ 92 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 92 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence 78999999999999999865 56666666663
No 92
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=91.52 E-value=0.24 Score=37.12 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.6
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
..+|.-|. .|+|.++++++||.|..|++|+.|+..
T Consensus 41 ~~~i~Ap~------~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 41 SMEVPSPK------AGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEEECSS------SSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEECCC------CEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 34566665 799999999999999999999999753
No 93
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=91.10 E-value=0.3 Score=40.79 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=25.2
Q ss_pred eEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGD-EIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd-~V~~Gd~l~~vetd 129 (372)
.|+|.++++++|| .|..|++|++|+..
T Consensus 78 ~G~V~~i~v~~Gd~~V~~G~~L~~i~~~ 105 (128)
T 1y8o_B 78 EGYLAKILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp CEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 8999999999998 89999999999854
No 94
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.87 E-value=0.28 Score=38.84 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=30.3
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCee-cCCCeEEEEEeCc
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEI-EEFQPLCAVQSDK 130 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V-~~Gd~l~~vetdK 130 (372)
..+|.-|. .|+|.++++++||.| ..|++|+.|+.+.
T Consensus 50 ~~~i~Ap~------~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 50 VVTLDASD------DGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp EEEEECSS------CEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred eeEEeCCC------CEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 44566655 899999999999999 9999999998653
No 95
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=90.45 E-value=0.18 Score=48.93 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred eEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 122 PLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 122 ~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
.-+.|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 34455543 356899999999999999999999999999999753
No 96
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=90.41 E-value=0.24 Score=49.03 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCCeecCCCeEEEEEeC-ceeeEEecCCCeEEEEEcc-CCCCeEecccEEEEEecC
Q 017418 113 EGDEIEEFQPLCAVQSD-KATIEITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 166 (372)
Q Consensus 113 eGd~V~~Gd~l~~vetd-K~~~ei~ap~~G~v~~i~~-~eg~~v~vG~~la~i~~~ 166 (372)
.|+.-..=.....|+.| .-...|.++.+|+|.++++ ++|+.|+.|++|+.|+..
T Consensus 101 ~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 101 RGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp EECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEECC
T ss_pred EeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCH
Confidence 33333333344455543 4467899999999999998 999999999999999853
No 97
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=90.22 E-value=0.17 Score=38.16 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=28.2
Q ss_pred ecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 136 TSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 136 ~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
-++..|.|.++++++|+.|..|++|+.++..
T Consensus 11 g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 11 GGHENVDIIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp SSCSSEEEEEECCCSSCBCCSSCCCEEEECS
T ss_pred CCCCcEEEEEEEcCCCCEECCCCEEEEEEeC
Confidence 3578999999999999999999999999864
No 98
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=90.17 E-value=0.22 Score=37.98 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=31.2
Q ss_pred ceEEEEccCCCCCcceEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 88 GIVDVPLAQTGEGIAECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
....|.-|. .|+|.++++++||.|..|++|+.|+.+
T Consensus 38 ~~~~i~Ap~------~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 38 ASMEVPAPF------AGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SEEEEECSS------CBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred cEEEEECCC------CEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 356677776 899999999999999999999999864
No 99
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=89.82 E-value=0.37 Score=38.89 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.3
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCC-eecCCCeEEEEEeC
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGD-EIEEFQPLCAVQSD 129 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd-~V~~Gd~l~~vetd 129 (372)
..+|.-|. .|+|.++++++|| .|..|++|++|+..
T Consensus 50 ~~~i~Ap~------~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 50 TVGFESLE------ECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp EEEEECSS------SEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred eeEEeCCC------CEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 44555554 8999999999999 89999999999854
No 100
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=88.68 E-value=0.2 Score=44.82 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=34.6
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEE--------------------------E--ccCCCCeEecccEEEE
Q 017418 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQ--------------------------L--LHAPGNIVKVGETLLK 162 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~--------------------------i--~~~eg~~v~vG~~la~ 162 (372)
|++|+.|+.||+|+ -| ..|-|..+|+|.- + +|++||.|..|+.|+.
T Consensus 85 V~dG~~V~~GdvLA---Kd---~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V~~Ge~L~D 158 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KN---EEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 158 (193)
T ss_dssp CCTTCEECTTSBSS---TT---SCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEcCCCEEe---cC---CeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEECCCCCccc
Confidence 89999999999998 22 3345666666531 3 7889999999998874
No 101
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=87.10 E-value=0.15 Score=49.06 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=42.0
Q ss_pred cCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 111 VKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 111 v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
++.|+.-..=..-..|+.. -...|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence 3444444444455566643 456899999999999999999999999999999754
No 102
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=86.55 E-value=1.1 Score=39.58 Aligned_cols=67 Identities=12% Similarity=0.268 Sum_probs=50.6
Q ss_pred eEEEEccCCCCCcceEEEEEEEcCCCCee----cCCCeEEEEEeCceeeEEecCCCeEEEEE------------------
Q 017418 89 IVDVPLAQTGEGIAECELLKWFVKEGDEI----EEFQPLCAVQSDKATIEITSRYKGKVAQL------------------ 146 (372)
Q Consensus 89 ~~~i~~P~lg~~~~eG~I~~w~v~eGd~V----~~Gd~l~~vetdK~~~ei~ap~~G~v~~i------------------ 146 (372)
...|.-|- +|+++.+ -+.-|.| --|+-++..=++. .|.||++|+|..+
T Consensus 34 ~~~i~aPv------~G~vi~L-~eV~D~vFs~~~mGdG~AI~P~~g---~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 34 AIEIIAPL------SGEIVNI-EDVPDVVFAEKIVGDGIAIKPTGN---KMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp CEEEECSS------CEEEEEG-GGSSCHHHHTTSSCEEEEEEECSS---EEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceEEEeec------ceEEEEc-hhCcChHhcccCccCeEEEEcCCC---EEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 34566665 7999875 4556655 2388888765553 7899999999887
Q ss_pred -----------------ccCCCCeEecccEEEEEec
Q 017418 147 -----------------LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 -----------------~~~eg~~v~vG~~la~i~~ 165 (372)
++++||.|+.|++|+.++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFDL 139 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEECH
Confidence 5779999999999999874
No 103
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=85.79 E-value=0.68 Score=48.96 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=32.1
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||..|+|.++++++||.|..|++|++++..
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 646 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIEAM 646 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEECS
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 45699999999999999999999999999999853
No 104
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=82.82 E-value=0.17 Score=38.20 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.4
Q ss_pred CCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 138 RYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 138 p~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..+|+|.++++++|+.|..|++|+.++..
T Consensus 14 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 14 VADATVATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CSCEECCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred CccEEEEEEECCCcCEECCCCEEEEEEcc
Confidence 46899999999999999999999999754
No 105
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=81.21 E-value=0.58 Score=40.34 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=36.5
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeCce--------e-eEEecCCCeEEEEEccCCCCeEecccEEEEE
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSDKA--------T-IEITSRYKGKVAQLLHAPGNIVKVGETLLKL 163 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetdK~--------~-~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i 163 (372)
+|+=-+.+|++||+|++||+|+++.-++. + +-+.- .+ +..+....+..|..|+.|..+
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~ 153 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTN-NG--GKTLEIVKMGEVKQGDVVAIL 153 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEE-CS--SCCCSCBCCEEECTTCEEEEE
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeEEEEEEC-CC--cceEEEccCceEcCCCEEEEe
Confidence 34445689999999999999999975432 1 22222 11 112333345667888887765
No 106
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=80.68 E-value=1.4 Score=49.62 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=28.3
Q ss_pred EEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVA 144 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~ 144 (372)
.++|++||.|++||.||+. |--+..|-+.++|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 6789999999999999987 5566677777777664
No 107
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=80.48 E-value=1 Score=43.67 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=39.4
Q ss_pred EcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 110 FVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.++.|+.|++||+|+++- | .+|.+|++|++.- .. .-.|..|+.++.+..
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p~V~~G~~~~~i~~ 328 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NRHVAIGQRAALMVC 328 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CTTCCTTSEEEEEEE
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CCCCCCCcEEEEEEE
Confidence 478999999999999984 4 6889999998743 44 678888988877754
No 108
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=80.22 E-value=1.4 Score=49.40 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=31.8
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++||.|..|++|++|+..
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGETVKANQPLLITEAM 1111 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTCEECTTCEEEEEESS
T ss_pred ceeecCceEEEEEEEeCCCCEECCCCEEEEEEec
Confidence 4799999999999999999999999999999854
No 109
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=80.08 E-value=1.5 Score=49.54 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=32.4
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|.||..|+|.++++++||.|+.|++|++|+..
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTCEECSSCEEEEEEET
T ss_pred CcEEeCCCcEEEEEEEcCCCCEECCCCEEEEEEec
Confidence 45699999999999999999999999999999864
No 110
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=78.09 E-value=1.1 Score=47.64 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=31.7
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++|+.|..|++|++|+..
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iEam 683 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAM 683 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEESS
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEecc
Confidence 5699999999999999999999999999999853
No 111
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=76.03 E-value=0.79 Score=44.71 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=32.6
Q ss_pred cCCCCeecCCCeEE-------------EEEeCceeeEEecCCCeEEEE----------EccCCCCeEecccEEEE
Q 017418 111 VKEGDEIEEFQPLC-------------AVQSDKATIEITSRYKGKVAQ----------LLHAPGNIVKVGETLLK 162 (372)
Q Consensus 111 v~eGd~V~~Gd~l~-------------~vetdK~~~ei~ap~~G~v~~----------i~~~eg~~v~vG~~la~ 162 (372)
|++|+.|+.||+|+ .+.-+|-.+.|+ +.+|...+ +++++||.|..|+.|+.
T Consensus 125 v~~g~~v~~G~vlak~~aiiaeidG~V~fg~~kr~i~i~-~~~g~~~eylip~~~~k~~~v~~Gd~V~~G~~l~d 198 (352)
T 2xhc_A 125 LRVGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVVQ-TPDGEQDVYYIPLDVFDRDRIKKGKEVKQGEMLAE 198 (352)
T ss_dssp CCTTCEECTTCBSBSSSSCBCCSCEEEEEEEEEEEEEEE-CTTSCEEEEEEEGGGCCTTTSCTTCEECTTCEEEC
T ss_pred cCCCCEEccCcEEecCceEEeccceEEEECCcEEEEEEE-CCCCCEEEEEEcCCCCcCeeeCCCCEEeCCCCccc
Confidence 89999999999877 111123333444 34443222 24778899999998874
No 112
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=75.83 E-value=0.55 Score=46.95 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 102 AECELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
.+|+|.++++++||.|..|++|+.|+.+.
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 38999999999999999999999998654
No 113
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=74.21 E-value=3.3 Score=35.82 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEEcCCCCeecCCCeEEEEEeCc
Q 017418 108 KWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.+|++||+|+.||+|+++.-++
T Consensus 97 ~~~V~~Gd~V~~G~~L~~~d~~~ 119 (161)
T 1f3z_A 97 KRIAEEGQRVKVGDTVIEFDLPL 119 (161)
T ss_dssp EECSCTTCEECTTCEEEEECHHH
T ss_pred EEEEeCcCEECCCCEEEEECHHH
Confidence 44899999999999999997543
No 114
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=73.62 E-value=2.2 Score=47.80 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=28.4
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++||.|+.|++|++++..
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iEam 1129 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIEAM 1129 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEEC-
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEEcc
Confidence 5799999999999999999999999999999853
No 115
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=73.60 E-value=0.68 Score=48.90 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 133 IEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
..|.||..|+|.++++++||.|..|++|++|+..
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iEam 636 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLEAM 636 (675)
T ss_dssp ----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEEec
Confidence 5699999999999999999999999999999853
No 116
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=72.11 E-value=2 Score=37.96 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
|+--+++|++||.|++||+|+++.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 444589999999999999999997544
No 117
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=67.16 E-value=1.1 Score=40.91 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred ceEEEEEEEcCCCCe-ecCCCeEEEEEeC
Q 017418 102 AECELLKWFVKEGDE-IEEFQPLCAVQSD 129 (372)
Q Consensus 102 ~eG~I~~w~v~eGd~-V~~Gd~l~~vetd 129 (372)
.+|+|.++++++||. |..|++|+.|+.+
T Consensus 53 ~~G~v~~i~v~~G~~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 53 DDGILAKIVVEEGSKNIRLGSLIGLIVEE 81 (229)
T ss_dssp -----------------------------
T ss_pred CCeEEEEEEecCCCeeecCCCEEEEEecc
Confidence 389999999999997 9999999999753
No 118
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=65.96 E-value=3.5 Score=35.67 Aligned_cols=24 Identities=42% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCc
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
.+.+|++||.|++||+|+++.-++
T Consensus 96 F~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 96 FTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp EEESCCCCSEECSEEEEEEECHHH
T ss_pred cEEEEeCCCEEcCCCEEEEECHHH
Confidence 455999999999999999997543
No 119
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=60.42 E-value=6.3 Score=37.12 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|++||+|++++-
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEE
Confidence 446899999999999999999974
No 120
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=58.60 E-value=6 Score=37.29 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.2
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|++++|+.|++||+|++++-
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEE
Confidence 6899999999999999999974
No 121
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=58.26 E-value=6.2 Score=37.31 Aligned_cols=22 Identities=5% Similarity=0.418 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|++++|+.|++||+|++++-
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 5899999999999999999973
No 122
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=57.48 E-value=6.7 Score=37.28 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.1
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
-++|++++|+.|+.||+|++++-
T Consensus 85 ~v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 85 KYEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEEeCCCCEeeCCCEEEEEEE
Confidence 35899999999999999998873
No 123
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=56.77 E-value=7.9 Score=36.06 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=19.7
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|.+++|+.|..||+|++|+-
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 5789999999999999999974
No 124
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=56.09 E-value=5.7 Score=37.48 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCeecCCCeEEEEEe
Q 017418 106 LLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 106 I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
-++|++++|+.|+.||+|++|+-
T Consensus 72 ~v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 72 LSKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEEcCCCCCcCCCCEEEEEEE
Confidence 36799999999999999999874
No 125
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=55.66 E-value=7.2 Score=37.05 Aligned_cols=22 Identities=23% Similarity=0.679 Sum_probs=19.4
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|++++|+.|..||+|++|+-
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEe
Confidence 5799999999999999998873
No 126
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=55.29 E-value=11 Score=36.09 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred eeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 131 ATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 131 ~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...-|+||.+|.+ ...++.|+.|+.|++|+.|...
T Consensus 256 ~~~~v~A~~~Gl~-~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 256 GDCYLFSEHDGLF-EIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp SCCCEECSSCEEE-EESSCTTCEECTTCEEEEEECS
T ss_pred CcEEEeCCCCeEE-EEcCCCCCEEcCCCEEEEEEcC
Confidence 3456899999977 4579999999999999999863
No 127
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=55.12 E-value=8 Score=37.59 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.2
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..-++||.+|++ ...++.|+.|+.|++|+.|..
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTCCBCTTCEEEEEEC
T ss_pred cEEEecCCCEEE-EEeCCCCCEeCCCCEEEEEEc
Confidence 445899999988 478999999999999999975
No 128
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=54.15 E-value=7.8 Score=37.17 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=21.2
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEe
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
+.-++|++++|+.|..||+|++|+-
T Consensus 107 ~~~v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 107 QVSIEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp CCEEEESSCTTCEECTTCEEEEEEE
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEe
Confidence 3446899999999999999999873
No 129
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=53.87 E-value=17 Score=36.23 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=34.7
Q ss_pred EEeCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCCC
Q 017418 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGDS 168 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~~ 168 (372)
+-..+...+|.|+.+|+|..| +.+.||.|..|++|++|-.+.+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 344667788999999999776 5678999999999999986543
No 130
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=53.70 E-value=8 Score=36.57 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCeecCCCeEEEEEe
Q 017418 105 ELLKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 105 ~I~~w~v~eGd~V~~Gd~l~~vet 128 (372)
.-++|++++|+.|..||+|++|+-
T Consensus 85 ~~v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 85 VRLTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp SEEEESCCTTCEECTTCEEEEEEE
T ss_pred eEEEEEcCCCCEecCCCEEEEEEE
Confidence 346899999999999999999974
No 131
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=52.58 E-value=17 Score=36.20 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=32.9
Q ss_pred EeCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCC
Q 017418 127 QSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 127 etdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
-..+ ..+|.|+.+|+|..| +.+.||.|..|++|++|-.+.
T Consensus 323 ~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 323 PLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 3456 788999999999776 567899999999999998654
No 132
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=50.37 E-value=6.8 Score=34.38 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=13.9
Q ss_pred EEEEcCCCCeecCCCeEEEEE
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~ve 127 (372)
.++.|++||.|++||+|..+.
T Consensus 83 ~~i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 83 DQIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp ESCCCCTTCEECTTCEEEEEC
T ss_pred CccccCCCCEEcCCCEEEeec
Confidence 345567777777777777665
No 133
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=48.76 E-value=20 Score=35.78 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=31.2
Q ss_pred eCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEe
Q 017418 128 SDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLV 164 (372)
Q Consensus 128 tdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~ 164 (372)
..+...+|.|+.+|+|..| +.+.||.|..|++|++|-
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 3456788889999988887 566899999999999998
No 134
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=48.33 E-value=9.6 Score=38.08 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.2
Q ss_pred eEEEEEEEcCCCCeecCCCeEEEEEeC
Q 017418 103 ECELLKWFVKEGDEIEEFQPLCAVQSD 129 (372)
Q Consensus 103 eG~I~~w~v~eGd~V~~Gd~l~~vetd 129 (372)
-+.=+.++++.||.|++||+|++|=.+
T Consensus 377 ~~~Gi~l~~~~G~~V~~g~~l~~i~~~ 403 (436)
T 3h5q_A 377 LAVGIVLNKKIGDKVEEGESLLTIHSN 403 (436)
T ss_dssp TTCEEEESCCTTCEECTTSEEEEEEES
T ss_pred CCCceEEecCCcCEeCCCCeEEEEeCC
Confidence 344468899999999999999988633
No 135
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=48.20 E-value=9.3 Score=36.13 Aligned_cols=22 Identities=23% Similarity=0.655 Sum_probs=18.9
Q ss_pred EEEEcCCCCeecCCCeEEEEEe
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vet 128 (372)
++|.+++|+.|..||+|++|+-
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 5789999999999999998873
No 136
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=45.21 E-value=14 Score=36.80 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.=+.++++.||.|++||+|+.|=+++
T Consensus 375 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 375 AVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp TCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 333688999999999999999997654
No 137
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=44.87 E-value=14 Score=36.71 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=22.5
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.=+.++++.||.|++||+|+.|=+++
T Consensus 367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 367 GVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333688999999999999999997654
No 138
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=43.60 E-value=20 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.8
Q ss_pred EEeCceeeEEecCCCeEEEEE-------------------------------ccCCCCeEecccEEEEEecCC
Q 017418 126 VQSDKATIEITSRYKGKVAQL-------------------------------LHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~i-------------------------------~~~eg~~v~vG~~la~i~~~~ 167 (372)
+-..+...+|.|+.+|+|..| +.+.||.|..|++|++|-.+.
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 334567788999999999877 566899999999999997643
No 139
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=42.78 E-value=17 Score=36.72 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.8
Q ss_pred EEEEcCCCCeecCCCeEEEEEeCc
Q 017418 107 LKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 107 ~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.++++.||.|++||+|+.|=+++
T Consensus 413 i~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 413 AELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp EEECSCTTCEECTTCEEEEEEESS
T ss_pred eEEEccCCCEECCCCeEEEEEcCC
Confidence 678899999999999999886543
No 140
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=41.23 E-value=35 Score=34.35 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.7
Q ss_pred EEeCceeeEEecCCCeEEEE-----------------------------EccCCCCeEecccEEEEEecCC
Q 017418 126 VQSDKATIEITSRYKGKVAQ-----------------------------LLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 126 vetdK~~~ei~ap~~G~v~~-----------------------------i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+-..+...+|.|+.+|+|.. ++.+.||.|..|++|++|-.+.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCC
Confidence 34566778899999999854 4577899999999999998654
No 141
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=40.99 E-value=13 Score=34.88 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=14.0
Q ss_pred EccCCCCeEecccEEEEEecC
Q 017418 146 LLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~~ 166 (372)
+.|++||.|..|+.|+.+...
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTCEECTTCEEEECCCT
T ss_pred cccCCcCEECCCCEEEEECCC
Confidence 456677777777777766543
No 142
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=40.31 E-value=13 Score=34.16 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=11.5
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~ve 127 (372)
++.|++||.|++||+|+.+.
T Consensus 134 ~i~Vk~Gd~V~~Gq~IG~vG 153 (245)
T 3tuf_B 134 EVSVEQGDKVKQNQVIGKSG 153 (245)
T ss_dssp EESCCTTCEECTTCEEEECB
T ss_pred ccccCCCCEECCCCEEEEeC
Confidence 45555666666666555554
No 143
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=39.85 E-value=24 Score=29.42 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=30.0
Q ss_pred ceEEEEccCCCCCcceEEEEEE---EcCCCCeec---CCC-eEEEEEeC
Q 017418 88 GIVDVPLAQTGEGIAECELLKW---FVKEGDEIE---EFQ-PLCAVQSD 129 (372)
Q Consensus 88 ~~~~i~~P~lg~~~~eG~I~~w---~v~eGd~V~---~Gd-~l~~vetd 129 (372)
...+|..|- .|+|+++ +++.|+.|. .|+ .|++|+..
T Consensus 73 ~~~eI~aPv------sG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~~~ 115 (136)
T 1zko_A 73 AAADVYAPL------SGKIVEVNEKLDTEPELINKDPEGEGWLFKMEIS 115 (136)
T ss_dssp CEEEEECSS------CEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEES
T ss_pred EeEEEecCC------CeEEEEEehhhccCccCcccCCCCCeEEEEEEEC
Confidence 455677776 8999999 889999999 898 99999854
No 144
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=39.63 E-value=14 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=16.6
Q ss_pred EccCCCCeEecccEEEEEecCC
Q 017418 146 LLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+.|++|+.|..|++|+.+...+
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 5678888888888888876543
No 145
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=39.48 E-value=22 Score=30.82 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=32.5
Q ss_pred eecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecCC
Q 017418 116 EIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 116 ~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~~ 167 (372)
.+++|+-|+.++ .+|+..-+.+.+|+.|-.|+.||.+.+..
T Consensus 95 ~lkkGt~L~lvp-----------aeG~~V~~i~~~G~rV~kgd~lA~i~T~K 135 (169)
T 3d4r_A 95 YLKAGTKLISVP-----------AEGYKVYPIMDFGFRVLKGYRLATLESKK 135 (169)
T ss_dssp EECTTCBCEEEE-----------ECSSEEEECCCCSEEECTTCEEEEEECTT
T ss_pred EEcCCCEEEEEE-----------eCceEEEEEcCcCcEeccCCeEEEEEecC
Confidence 456777778776 45666678899999999999999998643
No 146
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=39.42 E-value=32 Score=32.89 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=30.0
Q ss_pred CceeeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 129 DKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 129 dK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+...-++|+.+|.+ ...++.|+.|+.|++|+.+..
T Consensus 264 ~~~~~~v~A~~~G~~-~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 264 READAYVMAPRTGLF-EPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp CCGGGEEECSSCEEE-EESCCTTCEECTTSEEEEEEC
T ss_pred cCCcEEEECCCCEEE-EEeCCCCCEeCCCCEEEEEEC
Confidence 344566899999966 667899999999999999985
No 147
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=39.36 E-value=32 Score=29.93 Aligned_cols=65 Identities=9% Similarity=-0.114 Sum_probs=43.1
Q ss_pred CceEEEEccCC--------CCCcceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEeccc
Q 017418 87 SGIVDVPLAQT--------GEGIAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGE 158 (372)
Q Consensus 87 ~~~~~i~~P~l--------g~~~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~ 158 (372)
+.-++|..|.= =-...+|+|+..- |- .++|+-+.-...+.+. +.++.|++|+.|..|+
T Consensus 32 H~GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G~-~V~I~H~~g~~t~Y~H----L~~i~V~~G~~V~~Gq 97 (182)
T 3it5_A 32 YSSFDASYDWPRWGSATYSVVAAHAGTVRVLS---------RC-QVRVTHPSGWATNYYH----MDQIQVSNGQQVSADT 97 (182)
T ss_dssp CCEEEEESSCCCTTSCCCEEECSSSEEEEEEE---------TT-EEEEECTTSEEEEEES----EESCCCCTTCEECTTC
T ss_pred eecEEecCCCCCCCCCCCEEEeccCEEEEEEC---------Ce-EEEEEECCcEEEEEEc----CCccccCCCCEEcCCC
Confidence 56788888731 1245678888753 33 3456655433444433 3456799999999999
Q ss_pred EEEEEec
Q 017418 159 TLLKLVV 165 (372)
Q Consensus 159 ~la~i~~ 165 (372)
+|+.+..
T Consensus 98 ~IG~vG~ 104 (182)
T 3it5_A 98 KLGVYAG 104 (182)
T ss_dssp EEEEECS
T ss_pred EEEeecC
Confidence 9999975
No 148
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=36.51 E-value=7.5 Score=44.00 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=16.3
Q ss_pred EEcCCCCeecCCCeEEEE
Q 017418 109 WFVKEGDEIEEFQPLCAV 126 (372)
Q Consensus 109 w~v~eGd~V~~Gd~l~~v 126 (372)
+.|++|+.|..||+|+.+
T Consensus 1107 ~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp CCCCSSCEECTTCEEECC
T ss_pred EEecCCCEeccCceEEec
Confidence 468999999999999987
No 149
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=34.20 E-value=18 Score=34.07 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=18.0
Q ss_pred EEEEcCCCCeecCC------CeEEEEEe
Q 017418 107 LKWFVKEGDEIEEF------QPLCAVQS 128 (372)
Q Consensus 107 ~~w~v~eGd~V~~G------d~l~~vet 128 (372)
++|.+++|+.|..| |+|++|+-
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 56888999999998 88888763
No 150
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=34.18 E-value=15 Score=36.78 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCeecCCCeEEEEEeCc
Q 017418 104 CELLKWFVKEGDEIEEFQPLCAVQSDK 130 (372)
Q Consensus 104 G~I~~w~v~eGd~V~~Gd~l~~vetdK 130 (372)
+.=+.++++.||.|++||+|+.|=+++
T Consensus 380 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 380 SVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CcCeeEeccCCCEECCCCeEEEEecCC
Confidence 334678999999999999999997654
No 151
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=33.97 E-value=19 Score=33.15 Aligned_cols=19 Identities=26% Similarity=0.172 Sum_probs=11.5
Q ss_pred ccCCCCeEecccEEEEEec
Q 017418 147 LHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 147 ~~~eg~~v~vG~~la~i~~ 165 (372)
.|++|+.|..|++|+.+..
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 4566666666666666654
No 152
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=30.19 E-value=24 Score=33.96 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.1
Q ss_pred EccCCCCeEecccEEEEEecCC
Q 017418 146 LLHAPGNIVKVGETLLKLVVGD 167 (372)
Q Consensus 146 i~~~eg~~v~vG~~la~i~~~~ 167 (372)
+.|++|+.|..|++|+.+...+
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~tg 305 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGATG 305 (361)
T ss_dssp ECCCTTCEECTTCEEEECCCCS
T ss_pred cccCCcCEECCCCEEEEECCCC
Confidence 5678888888888888887543
No 153
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=28.20 E-value=12 Score=35.77 Aligned_cols=35 Identities=6% Similarity=-0.185 Sum_probs=24.8
Q ss_pred EcCCCCeecCCCeEEEEEeC-----ceeeEEecCCCeEEE
Q 017418 110 FVKEGDEIEEFQPLCAVQSD-----KATIEITSRYKGKVA 144 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetd-----K~~~ei~ap~~G~v~ 144 (372)
.++.|+.|++||+|+++-.. ....+|.+|.+|+|.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 46899999999999987543 234569999999883
No 154
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=27.91 E-value=31 Score=30.33 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=17.0
Q ss_pred EEEcCCCCeecCCCeEEEEE
Q 017418 108 KWFVKEGDEIEEFQPLCAVQ 127 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~ve 127 (372)
.+.|++|+.|+.||+|+.+-
T Consensus 167 ~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 167 IVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCEEcCCCEEEEcc
Confidence 34589999999999999874
No 155
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=27.65 E-value=7.5 Score=29.96 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.2
Q ss_pred EEEcCCCCeecCCCeEE
Q 017418 108 KWFVKEGDEIEEFQPLC 124 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~ 124 (372)
.++|++||.|+.||.|.
T Consensus 66 ~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 66 QLNVFEGERVERGDVIS 82 (84)
T ss_dssp CCSSCTTEEECBSCSSB
T ss_pred ceEeCCCCEECCCCCcc
Confidence 44799999999999874
No 156
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=27.25 E-value=21 Score=34.07 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=18.0
Q ss_pred EEEcCCCCeecCCCeEEEEEe
Q 017418 108 KWFVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 108 ~w~v~eGd~V~~Gd~l~~vet 128 (372)
++.|++||.|++||+|+.+.+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 457999999999999998864
No 157
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=26.48 E-value=72 Score=26.25 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=25.8
Q ss_pred EecCCCeEEEEEcc-CCCCeEecccEEEEEecC
Q 017418 135 ITSRYKGKVAQLLH-APGNIVKVGETLLKLVVG 166 (372)
Q Consensus 135 i~ap~~G~v~~i~~-~eg~~v~vG~~la~i~~~ 166 (372)
+..+.-|.|..+.+ ++|+.|..|++|+.|+..
T Consensus 30 ~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~ 62 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGVSVTKGKGFGAVESV 62 (131)
T ss_dssp HHHHHHCSEEEEECCCTTCEECBTSEEEEEEES
T ss_pred hhcccCCCceEEEecCCCCEEeCCCEEEEEEec
Confidence 34466677777777 899999999999999853
No 158
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=25.90 E-value=1.1e+02 Score=31.73 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=38.3
Q ss_pred EcCCCCeecCCCeEEEEEeCc-eeeEEe--cCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 110 FVKEGDEIEEFQPLCAVQSDK-ATIEIT--SRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetdK-~~~ei~--ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+++||.|..||++.+|.-.. ....|. ....|+|..| .+| ...+-++++.++.
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g-~~~v~~~v~~i~~ 185 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG-SFTIDDPICVIET 185 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE-EECTTSCCEEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC-cceeceeEEEEec
Confidence 379999999999999986433 335543 3468999887 555 4577777777763
No 159
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=25.77 E-value=63 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=10.5
Q ss_pred eEEecCCCeEEEEEc
Q 017418 133 IEITSRYKGKVAQLL 147 (372)
Q Consensus 133 ~ei~ap~~G~v~~i~ 147 (372)
..|.|+.+|+|....
T Consensus 243 t~V~A~~~G~V~~~~ 257 (361)
T 2gu1_A 243 APVYSTGDGKVIVVR 257 (361)
T ss_dssp CEEECSSSEEEEEEE
T ss_pred CeEEEeeCEEEEEeE
Confidence 357788888886654
No 160
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=24.56 E-value=61 Score=30.49 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=28.1
Q ss_pred eeEEecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 132 TIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 132 ~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
..-++|+..|.+. ..++.|+.|+.|++|+.+..
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~d 289 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLHP 289 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTCEECTTCEEEEEEC
T ss_pred ceEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEEC
Confidence 3457899999885 77889999999999999965
No 161
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=23.99 E-value=1.2e+02 Score=27.72 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=16.2
Q ss_pred EEE-EcCCCCeecCCCeEEEEEe
Q 017418 107 LKW-FVKEGDEIEEFQPLCAVQS 128 (372)
Q Consensus 107 ~~w-~v~eGd~V~~Gd~l~~vet 128 (372)
.++ .|++||.|++||+|+.+..
T Consensus 179 ~~~~~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 179 DSYAELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SEECSCCTTCEECTTCEEEECBC
T ss_pred CCCCcCCCCCEECCCCEEEEECC
Confidence 355 6888888888888887753
No 162
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=22.76 E-value=1.3e+02 Score=31.17 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=37.3
Q ss_pred EcCCCCeecCCCeEEEEEeC-ceeeEE--ecCCCeEEEEEccCCCCeEecccEEEEEec
Q 017418 110 FVKEGDEIEEFQPLCAVQSD-KATIEI--TSRYKGKVAQLLHAPGNIVKVGETLLKLVV 165 (372)
Q Consensus 110 ~v~eGd~V~~Gd~l~~vetd-K~~~ei--~ap~~G~v~~i~~~eg~~v~vG~~la~i~~ 165 (372)
.+++||.|..||++.+|.-. -.+..| .....|+|..+ ..+| ...+-++++.++.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i-~~~g-~~~v~~~i~~i~~ 179 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI-AEEG-DYTIEEVIAKVKT 179 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCSE-EECTTSEEEEEEC
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe-ccCC-cccccceEEEEec
Confidence 47999999999999988633 234444 34478988776 3444 3466777777764
No 163
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=21.69 E-value=1.4e+02 Score=27.12 Aligned_cols=57 Identities=11% Similarity=-0.021 Sum_probs=35.8
Q ss_pred cceEEEEEEEcCCCCeecCCCeEEEEEeCceeeEEecCCCeEEEEEccCCCCeEecccEEEEEecC
Q 017418 101 IAECELLKWFVKEGDEIEEFQPLCAVQSDKATIEITSRYKGKVAQLLHAPGNIVKVGETLLKLVVG 166 (372)
Q Consensus 101 ~~eG~I~~w~v~eGd~V~~Gd~l~~vetdK~~~ei~ap~~G~v~~i~~~eg~~v~vG~~la~i~~~ 166 (372)
...|+|+.+-...| -|- .+.|+-..-...+.+. |.++.|..|+.|..|++|+.+...
T Consensus 99 ~~~G~V~~~g~~~~----~G~-~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 99 SLSGTVVKAEKDPV----LGY-VVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp SSCEEEEEEEEETT----TEE-EEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEECBCC
T ss_pred CcCeEEEEEEecCC----Cce-EEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEeCCc
Confidence 34788877643322 232 3345544333333332 446789999999999999999764
No 164
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=21.60 E-value=64 Score=27.63 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=25.2
Q ss_pred cCChHHHHHHHHhCCCCccccCCCCCCceehhhHHHH
Q 017418 203 LATPTVRNLAKLYGINLYDVDATGKDGRVLKEDVLKY 239 (372)
Q Consensus 203 ~asP~aR~lA~e~gIdl~~V~GTG~~GrI~~~DV~~~ 239 (372)
.+.|.+++.++++|||++.-.. -.|+.+|+..|
T Consensus 67 ~~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 67 PPHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 4689999999999999874322 24888888755
No 165
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=20.94 E-value=2.6e+02 Score=26.21 Aligned_cols=13 Identities=31% Similarity=0.284 Sum_probs=6.1
Q ss_pred EEecCCCeEEEEE
Q 017418 134 EITSRYKGKVAQL 146 (372)
Q Consensus 134 ei~ap~~G~v~~i 146 (372)
.|.|+.+|+|..+
T Consensus 197 pV~A~adG~Vv~a 209 (291)
T 1qwy_A 197 PVYSLTDGTVVQA 209 (291)
T ss_dssp EEECSSSEEEEEE
T ss_pred eEEeCcCeEEEEE
Confidence 3445555554443
Done!