BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017419
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/224 (63%), Positives = 171/224 (76%), Gaps = 2/224 (0%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+P SVDWR+KGAV VKDQG CGSCWAFST+ AVEGIN+I T +L+SLSEQELVDCD
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
N GCNGGLMDYAF+FI Q GG+ +E +YPY + CD S+ NA VSIDG+E+V DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTE-NGVDYWLV 319
+L KAVA+QPVSVAI+AGG FQ Y GVFTG CG+ LDHGV VGYGT +G YW V
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 320 RNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNS 363
+NSWG +WGE GY++++R + D G CGIAMEASYP+K S N+
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKE-GLCGIAMEASYPIKKSSNN 224
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 287 bits (735), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 137/219 (62%), Positives = 167/219 (76%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP+ VDWR GAV +KDQG CGSCWAFST+AAVEGINKI TG+LISLSEQELVDC R
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 201 NA-GCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GC+GG M FQFII NGG+++E +YPY E +C+ + K VSID YE+V +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 260 EMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLV 319
E +L+ AVA QPVSVA+EA G FQHY SG+FTG CG+A+DH V VGYGTE G+DYW+V
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 320 RNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
+NSWG+ WGE GY+++QRN+ G+CGIA +ASYPVK
Sbjct: 181 KNSWGTTWGEEGYMRIQRNV--GGVGQCGIAKKASYPVK 217
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 286 bits (731), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 173/224 (77%), Gaps = 3/224 (1%)
Query: 139 DELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDR 198
D+LP+S+DWRE GAV PVK+QG CGSCWAFSTVAAVEGIN+IVTG+LISLSEQ+LVDC
Sbjct: 1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDC-T 59
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GC GG M+ AFQFI+ NGG++SE+ YPY G + C+ S NA VVSID YE+V
Sbjct: 60 TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICN-STVNAPVVSIDSYENVPSH 118
Query: 259 DEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWL 318
+E SL+KAVA+QPVSV ++A GR FQ Y SG+FTG C + +H + VGYGTEN D+W+
Sbjct: 119 NEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWI 178
Query: 319 VRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQN 362
V+NSWG +WGE+GY++ +RN+ + + GKCGI ASYPVK N
Sbjct: 179 VKNSWGKNWGESGYIRAERNIENPD-GKCGITRFASYPVKKGTN 221
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 283 bits (725), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 136/219 (62%), Positives = 166/219 (75%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP+ VDWR GAV +KDQG CGS WAFST+AAVEGINKI TG+LISLSEQELVDC R
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 201 NA-GCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GC+GG M FQFII NGG+++E +YPY E +C+ + K VSID YE+V +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 260 EMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLV 319
E +L+ AVA QPVSVA+EA G FQHY SG+FTG CG+A+DH V VGYGTE G+DYW+V
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 320 RNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
+NSWG+ WGE GY+++QRN+ G+CGIA +ASYPVK
Sbjct: 181 KNSWGTTWGEEGYMRIQRNV--GGVGQCGIAKKASYPVK 217
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/218 (60%), Positives = 164/218 (75%), Gaps = 4/218 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP VDWR KGAVN +K+Q CGSCWAFS VAAVE INKI TG+LISLSEQELVDCD
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG M+ AFQ+II NGG+D++Q+YPY + C P R +VVSI+G++ V+ +E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYR--LRVVSINGFQRVTRNNE 117
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L+ AVA QPVSV +EA G FQHY SG+FTG CG+A +HGVV VGYGT++G +YW+VR
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVR 177
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
NSWG +WG GY+ ++RN+ + G CGIA SYP K
Sbjct: 178 NSWGQNWGNQGYIWMERNVASS-AGLCGIAQLPSYPTK 214
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 277 bits (709), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 167/233 (71%), Gaps = 8/233 (3%)
Query: 140 ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRK 199
+LP SVDWR+KGAV VKDQG CGSCWAFSTV +VEGIN I TG L+SLSEQEL+DCD
Sbjct: 3 DLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTA 62
Query: 200 INAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSR---RNAKVVSIDGYEDVS 256
N GC GGLMD AF++I NGG+ +E YPY A C+ +R + VV IDG++DV
Sbjct: 63 DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVP 122
Query: 257 PFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGT-ENGVD 315
E L +AVA+QPVSVA+EA G+AF Y GVFTGECG+ LDHGV VGYG E+G
Sbjct: 123 ANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDGKA 182
Query: 316 YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAKPKP 368
YW V+NSWG WGE GY++++++ + G CGIAMEASYPVK +KPKP
Sbjct: 183 YWTVKNSWGPSWGEQGYIRVEKD-SGASGGLCGIAMEASYPVK---TYSKPKP 231
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 273 bits (698), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 196/316 (62%), Gaps = 10/316 (3%)
Query: 44 TDDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADL 103
+ + ++ ++++W+ KH K + RF+IFKDNL++IDE N N +Y +GLN FAD+
Sbjct: 58 STERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADM 117
Query: 104 TNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQGSCG 163
+N+E++ Y G+ + ++++ + +PE VDWR+KGAV PVK+QGSCG
Sbjct: 118 SNDEFKEKYTGSIAG---NYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCG 174
Query: 164 SCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMD 223
S WAFS V+ +E I KI TG L SEQEL+DCDR+ + GCNGG A Q + Q G+
Sbjct: 175 SAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQY-GIH 232
Query: 224 SEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAF 283
YPY G + C + DG V P++E +L ++A+QPVSV +EA G+ F
Sbjct: 233 YRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF 292
Query: 284 QHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTN 343
Q Y G+F G CG+ +DH V AVGYG +Y L+RNSWG+ WGENGY++++R ++
Sbjct: 293 QLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNS- 347
Query: 344 TGKCGIAMEASYPVKN 359
G CG+ + YPVKN
Sbjct: 348 YGVCGLYTSSFYPVKN 363
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 198/320 (61%), Gaps = 15/320 (4%)
Query: 44 TDDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADL 103
+ + ++ ++ +W+ H K + RF+IFKDNL +IDE N N +Y +GLN+FADL
Sbjct: 14 STERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADL 73
Query: 104 TNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDE----LPESVDWREKGAVNPVKDQ 159
+N+E+ Y+G+ DA Q Y + +E LPE+VDWR+KGAV PV+ Q
Sbjct: 74 SNDEFNEKYVGSLIDA--------TIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQ 125
Query: 160 GSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQN 219
GSCGSCWAFS VA VEGINKI TG+L+ LSEQELVDC+R+ + GC GG YA +++ +N
Sbjct: 126 GSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN 184
Query: 220 GGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAG 279
G + YPY + C + +V G V P +E +L A+A QPVSV +E+
Sbjct: 185 G-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESK 243
Query: 280 GRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
GR FQ Y+ G+F G CG+ +D V AVGYG G Y L++NSWG+ WGE GY++++R
Sbjct: 244 GRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKR-A 302
Query: 340 LDTNTGKCGIAMEASYPVKN 359
+ G CG+ + YP KN
Sbjct: 303 PGNSPGVCGLYKSSYYPTKN 322
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 158/219 (72%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP VDWR GAV +K QG CG CWAFS +A VEGINKIVTG LISLSEQEL+DC R
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 201 NA-GCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GCNGG + FQFII NGG+++E++YPY + +C+ +N K V+ID YE+V +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 260 EMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLV 319
E +L+ AV QPVSVA++A G AF+ Y SG+FTG CG+A+DH V VGYGTE G+DYW+V
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 320 RNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
+NSW + WGE GY+++ RN+ G CGIA SYPVK
Sbjct: 181 KNSWDTTWGEEGYMRILRNV--GGAGTCGIATMPSYPVK 217
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 257 bits (656), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 122/219 (55%), Positives = 157/219 (71%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP VDWR GAV +K QG CG WAFS +A VEGINKI +G LISLSEQEL+DC R
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 201 NA-GCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GC+GG + FQFII +GG+++E++YPY + CD + ++ K V+ID YE+V +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 260 EMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLV 319
E +L+ AV QPVSVA++A G AF+ Y SG+FTG CG+A+DH +V VGYGTE GVDYW+V
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 320 RNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
+NSW + WGE GY+++ RN+ G CGIA SYPVK
Sbjct: 181 KNSWDTTWGEEGYMRILRNV--GGAGTCGIATMPSYPVK 217
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 126/218 (57%), Positives = 155/218 (71%), Gaps = 11/218 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPE +DWR+KGAV PVK+QG CGSCWAFSTV+ VE IN+I TG LISLSEQ+LVDC++K
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
N GC GG YA+Q+II NGG+D+E +YPY + C R KVV IDGY+ V +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPC---RAAKKVVRIDGYKGVPHCNE 116
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+LKKAVA QP VAI+A + FQHY+SG+F+G CG+ L+HGVV VGY DYW+VR
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVR 172
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
NSWG WGE GY++++R G CGIA YP K
Sbjct: 173 NSWGRYWGEQGYIRMKR---VGGCGLCGIARLPYYPTK 207
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 125/218 (57%), Positives = 149/218 (68%), Gaps = 11/218 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPE VDWR KGAV P+K+QG CGSCWAFSTV VE IN+I TG LISLSEQ+LVDC +K
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
N GC GG D A+Q+II NGG+D+E +YPY + P R KVV IDG + V +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQG---PCRAAKKVVRIDGCKGVPQCNE 116
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+LK AVA QP VAI+A + FQHY+ G+FTG CG+ L+HGVV VGYG DYW+VR
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVR 172
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
NSWG WGE GY +++R G CGIA YP K
Sbjct: 173 NSWGRHWGEQGYTRMKR---VGGCGLCGIARLPFYPTK 207
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 247 bits (631), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 153/218 (70%), Gaps = 11/218 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPE +DWR+KGAV PVK+QGSCGSCWAFSTV+ VE IN+I TG LISLSEQELVDCD+K
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
N GC GG +A+Q+II NGG+D++ +YPY + C + +KVVSIDGY V +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAA---SKVVSIDGYNGVPFCNE 116
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+LK+AVA QP +VAI+A FQ Y SG+F+G CG+ L+HGV VGY +YW+VR
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQA----NYWIVR 172
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
NSWG WGE GY+++ R G CGIA YP K
Sbjct: 173 NSWGRYWGEKGYIRMLR---VGGCGLCGIARLPYYPTK 207
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 193/325 (59%), Gaps = 26/325 (8%)
Query: 45 DDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNR----TYKVGLNKF 100
D + + W A H + GM R +++ N++ I+ HN R ++ + +N F
Sbjct: 1 DHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 59
Query: 101 ADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQG 160
D+T+EE+R + G ++ R+ K KV + +A P SVDWREKG V PVK+QG
Sbjct: 60 GDMTSEEFRQVMNGLQN---RKPRKGKVFQEPLFYEA----PRSVDWREKGYVTPVKNQG 112
Query: 161 SCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKINAGCNGGLMDYAFQFIIQN 219
CGS WAFS A+EG TG LISLSEQ LVDC + N GCNGGLMDYAFQ++ N
Sbjct: 113 QCGSSWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDN 172
Query: 220 GGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEA 278
GG+DSE+ YPY E C + + + V + G+ D+ P E +L KAVA P+SVAI+A
Sbjct: 173 GGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDI-PKQEKALMKAVATVGPISVAIDA 230
Query: 279 GGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE----NGVDYWLVRNSWGSDWGENGY 332
G +F Y+ G+ F +C S +DHGV+ VGYG E +G YWLV+NSWG +WG GY
Sbjct: 231 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGY 290
Query: 333 VKLQRNLLDTNTGKCGIAMEASYPV 357
VK+ ++ + CGIA ASYP
Sbjct: 291 VKMAKDRRN----HCGIASAASYPT 311
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 150/217 (69%), Gaps = 3/217 (1%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+S+DWR KGAV PVK+QG+CGS WAFST+A VEGINKIVTG L+ LSEQELVDCD+ +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-S 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEM 261
GC GG + Q++ NG + + + YPY + KC + + V I GY+ V E
Sbjct: 61 YGCKGGYQTTSLQYVANNG-VHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 262 SLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRN 321
S A+A+QP+SV +EAGG+ FQ Y+SGVF G CG+ LDH V AVGYGT +G +Y +++N
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKN 179
Query: 322 SWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
SWG +WGE GY++L+R ++ G CG+ + YP K
Sbjct: 180 SWGPNWGEKGYMRLKRQSGNSQ-GTCGVYKSSYYPFK 215
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 141/325 (43%), Positives = 192/325 (59%), Gaps = 26/325 (8%)
Query: 45 DDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNR----TYKVGLNKF 100
D + + W A H + GM R +++ N++ I+ HN R ++ + +N F
Sbjct: 5 DHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63
Query: 101 ADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQG 160
D+T+EE+R + G ++ R+ K KV + +A P SVDWREKG V PVK+QG
Sbjct: 64 GDMTSEEFRQVMNGFQN---RKPRKGKVFQEPLFYEA----PRSVDWREKGYVTPVKNQG 116
Query: 161 SCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKINAGCNGGLMDYAFQFIIQN 219
CGS WAFS A+EG TG LISLSEQ LVDC + N GCNGGLMDYAFQ++ N
Sbjct: 117 QCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 176
Query: 220 GGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEA 278
GG+DSE+ YPY E C + + + V + G+ D+ P E +L KAVA P+SVAI+A
Sbjct: 177 GGLDSEESYPYEATEESCKYNPKYS-VANDAGFVDI-PKQEKALMKAVATVGPISVAIDA 234
Query: 279 GGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE----NGVDYWLVRNSWGSDWGENGY 332
G +F Y+ G+ F +C S +DHGV+ VGYG E + YWLV+NSWG +WG GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 333 VKLQRNLLDTNTGKCGIAMEASYPV 357
VK+ ++ + CGIA ASYP
Sbjct: 295 VKMAKDRRN----HCGIASAASYPT 315
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 152/217 (70%), Gaps = 7/217 (3%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
PES+DWREKGAV PVK+Q CGSCWAFSTVA +EGINKI+TG+LISLSEQEL+DC+R+ +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEM 261
GC+GG + Q+++ N G+ +E++YPY + +C + V I GY+ V DE+
Sbjct: 61 HGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 262 SLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRN 321
SL +A+A+QPVSV ++ GR FQ Y+ G++ G CG+ DH V AVGYG Y L++N
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGK----TYLLLKN 175
Query: 322 SWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358
SWG +WGE GY++++R + G CG+ + +P+K
Sbjct: 176 SWGPNWGEKGYIRIKR-ASGRSKGTCGVYTSSFFPIK 211
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/321 (42%), Positives = 189/321 (58%), Gaps = 22/321 (6%)
Query: 46 DEVM-TIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHN---SLN-RTYKVGLNKF 100
+E++ T ++ W H K N R I++ NL++I HN SL TY++ +N
Sbjct: 4 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHL 63
Query: 101 ADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQG 160
D+T+EE G K L S+ Y + P+SVD+R+KG V PVK+QG
Sbjct: 64 GDMTSEEVVQKMTGL----KVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQG 119
Query: 161 SCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNG 220
CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N GC GG M AFQ++ +N
Sbjct: 120 QCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKNR 178
Query: 221 GMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQ-PVSVAIE 277
G+DSE YPY+G E C +P+ + AK GY ++ +E +LK+AVA PVSVAI+
Sbjct: 179 GIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGNEKALKRAVARVGPVSVAID 235
Query: 278 AGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKL 335
A +FQ Y GV+ E C S L+H V+AVGYG + G +W+++NSWG +WG GY+ +
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 295
Query: 336 QRNLLDTNTGKCGIAMEASYP 356
RN CGIA AS+P
Sbjct: 296 ARN----KNNACGIANLASFP 312
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 169/271 (62%), Gaps = 25/271 (9%)
Query: 97 LNKFADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPV 156
+N F D+T+EE+R + G ++ R+ K KV + +A P SVDWREKG V PV
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQN---RKPRKGKVFQEPLFYEA----PRSVDWREKGYVTPV 54
Query: 157 KDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKINAGCNGGLMDYAFQF 215
K+QG CGSCWAFS A+EG TG LISLSEQ LVDC + N GCNGGLMDYAFQ+
Sbjct: 55 KNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQY 114
Query: 216 IIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPFDEMSLKKAVAD-QPV 272
+ NGG+DSE+ YPY E C + N K V + G+ D+ P E +L KAVA P+
Sbjct: 115 VQDNGGLDSEESYPYEATEESC---KYNPKYSVANDAGFVDI-PKQEKALMKAVATVGPI 170
Query: 273 SVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE----NGVDYWLVRNSWGSD 326
SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E + YWLV+NSWG +
Sbjct: 171 SVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEE 230
Query: 327 WGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
WG GYVK+ ++ + CGIA ASYP
Sbjct: 231 WGMGGYVKMAKDRRN----HCGIASAASYPT 257
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 151/221 (68%), Gaps = 6/221 (2%)
Query: 140 ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDR- 198
ELP VDWR +G V PVKDQ CGSCWAFST A+EG + TG+L+SLSEQEL+DC R
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRA 65
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
+ N C+GG M+ AFQ+++ +GG+ SE YPYL + +C ++ KVV I G++DV
Sbjct: 66 EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECR-AQSCEKVVKILGFKDVPRR 124
Query: 259 DEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGT--ENGVDY 316
E ++K A+A PVS+AIEA FQ Y GVF CG+ LDHGV+ VGYGT E+ D+
Sbjct: 125 SEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDF 184
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
W+++NSWG+ WG +GY+ + + G+CG+ ++AS+PV
Sbjct: 185 WIMKNSWGTGWGRDGYMYMAMH--KGEEGQCGLLLDASFPV 223
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 142/219 (64%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+PE VDWR+KGAV PVK+QGSCGSCWAFS V +EGI KI TG L SEQEL+DCDR+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG A Q + Q G+ YPY G + C + DG V P++E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L ++A+QPVSV +EA G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 145/219 (66%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPE+VDWR+KGAV PV+ QGSCGSCWAFS VA VEGINKI TG+L+ LSEQELVDC+R+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GC GG YA +++ +NG + YPY + C + +V G V P +E
Sbjct: 60 SHGCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L A+A QPVSV +E+ GR FQ Y+ G+F G CG+ +DH V AVGYG G Y L++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGE GY++++R + G CG+ + YP KN
Sbjct: 179 NSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYYPTKN 216
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 142/219 (64%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+PE VDWR+KGAV PVK+QGSCGSCWAFS V +EGI KI TG L SEQEL+DCDR+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG A Q + Q G+ YPY G + C + DG V P+++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L ++A+QPVSV ++A G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 217 bits (553), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 141/218 (64%), Gaps = 7/218 (3%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
PE VDWR+KGAV PVK+QGSCGSCWAFS V +EGI KI TG L SEQEL+DCDR+ +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEM 261
GCNGG A Q + Q G+ YPY G + C + DG V P+++
Sbjct: 61 YGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 262 SLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRN 321
+L ++A+QPVSV ++A G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++N
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIKN 175
Query: 322 SWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
SWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 176 SWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 217 bits (553), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 145/219 (66%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPE+VDWR+KGAV PV+ QGSCGSCWAFS VA VEGINKI TG+L+ LSEQELVDC+R+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GC GG YA +++ +NG + YPY + C + +V G V P +E
Sbjct: 60 SHGCKGGYPPYALEYVAKNG-IHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L A+A QPVSV +E+ GR FQ Y+ G+F G CG+ ++H V AVGYG G Y L++
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIK 178
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGE GY++++R + G CG+ + YP KN
Sbjct: 179 NSWGTAWGEKGYIRIKR-APGNSPGVCGLYKSSYYPTKN 216
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 141/219 (64%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+PE VDWR+KGAV PVK+QGSCGS WAFS V +EGI KI TG L SEQEL+DCDR+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG A Q + Q G+ YPY G + C + DG V P++E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L ++A+QPVSV +EA G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/314 (40%), Positives = 179/314 (57%), Gaps = 21/314 (6%)
Query: 52 YQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLN----RTYKVGLNKFADLTNEE 107
+ W +GK R I++ NL+F+ HN + +Y +G+N D+T+EE
Sbjct: 12 WHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEE 71
Query: 108 YRAMYLGTRSDAK-RRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQGSCGSCW 166
++ R ++ +R + K R LP+SVDWREKG V VK QGSCG+ W
Sbjct: 72 VMSLMSSLRVPSQWQRNITYKSNPNRI-------LPDSVDWREKGCVTEVKYQGSCGAAW 124
Query: 167 AFSTVAAVEGINKIVTGELISLSEQELVDC--DRKINAGCNGGLMDYAFQFIIQNGGMDS 224
AFS V A+E K+ TG+L+SLS Q LVDC ++ N GCNGG M AFQ+II N G+DS
Sbjct: 125 AFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDS 184
Query: 225 EQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQ-PVSVAIEAGGRAF 283
+ YPY + KC + + + Y ++ E LK+AVA++ PVSV ++A +F
Sbjct: 185 DASYPYKAMDQKCQYDSK-YRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSF 243
Query: 284 QHYESGV-FTGECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDT 342
Y SGV + C ++HGV+ VGYG NG +YWLV+NSWG ++GE GY+++ RN
Sbjct: 244 FLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARN---- 299
Query: 343 NTGKCGIAMEASYP 356
CGIA SYP
Sbjct: 300 KGNHCGIASFPSYP 313
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 141/219 (64%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+PE VDWR+KGAV PVK+QGSCGS WAFS V +EGI KI TG L SEQEL+DCDR+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG A Q + Q G+ YPY G + C + DG V P++E
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L ++A+QPVSV +EA G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/224 (52%), Positives = 149/224 (66%), Gaps = 13/224 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDR-K 199
LP+SVDWR+KG V PVK+Q CGSCWAFS A+EG TG+L+SLSEQ LVDC R +
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 200 INAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GCNGG M AFQ++ +NGG+DSE+ YPY+ + C N+ V G+ V+P
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE----N 312
E +L KAVA P+SVA++AG +FQ Y+SG+ F +C S LDHGV+ VGYG E +
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 313 GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
YWLV+NSWG +WG NGYVK+ + D N CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAK---DKNN-HCGIATAASYP 219
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 152/219 (69%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+P S+DWR+KGAV PV++QG CGSCW FS+VAAVEGINKIVTG+L+SLSEQEL+DC+R+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GC GG YA Q+ + N G+ Q YPY G + +C S+ V DG V +E
Sbjct: 60 SYGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L + +A QPVS+ +EA GRAFQ+Y G+F G CG+++DH V AVGYG DY L++
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN----DYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGE GY++++R + G CG+ ++ +P KN
Sbjct: 175 NSWGTGWGEGGYIRIKRGSGNPQ-GACGVLSDSVFPTKN 212
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/219 (47%), Positives = 141/219 (64%), Gaps = 7/219 (3%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
+PE VDWR+KGAV PVK+QGSCGS WAFS V +EGI KI TG L SEQEL+DCDR+
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCNGG A Q + Q G+ YPY G + C + DG V P+++
Sbjct: 60 SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
+L ++A+QPVSV ++A G+ FQ Y G+F G CG+ +DH V AVGYG +Y L++
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP----NYILIK 174
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG+ WGENGY++++R ++ G CG+ + YPVKN
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNS-YGVCGLYTSSFYPVKN 212
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 143/219 (65%), Gaps = 3/219 (1%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LPESVDWR KGAV PVK QG C SCWAFSTVA VEGINKI TG L+ LSEQELVDCD +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
+ GCN G + Q++ QNG + YPY+ + C ++ V +G V +E
Sbjct: 60 SYGCNRGYQSTSLQYVAQNG-IHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 261 MSLKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVR 320
SL A+A QPVSV +E+ GR FQ+Y+ G+F G CG+ +DH V AVGYG G Y L++
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 321 NSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKN 359
NSWG WGENGY++++R + G CG+ + YP+KN
Sbjct: 179 NSWGPGWGENGYIRIRR-ASGNSPGVCGVYRSSYYPIKN 216
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 211 bits (536), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 117/224 (52%), Positives = 148/224 (66%), Gaps = 13/224 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDR-K 199
LP+SVDWR+KG V PVK+Q CGS WAFS A+EG TG+L+SLSEQ LVDC R +
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 200 INAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GCNGG M AFQ++ +NGG+DSE+ YPY+ + C N+ V G+ V+P
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENS-VAQDTGFTVVAPGK 119
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE----N 312
E +L KAVA P+SVA++AG +FQ Y+SG+ F +C S LDHGV+ VGYG E +
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 313 GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
YWLV+NSWG +WG NGYVK+ + D N CGIA ASYP
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAK---DKNN-HCGIATAASYP 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 210 bits (535), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 147/228 (64%), Gaps = 18/228 (7%)
Query: 140 ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-R 198
E P SVDWREKG V PVK+QG CGSCWAFS A+EG TG LISLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVS 256
+ N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI- 116
Query: 257 PFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE-- 311
P E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 117 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 312 --NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 220
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 180/316 (56%), Gaps = 23/316 (7%)
Query: 51 IYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNR----TYKVGLNKFADLTNE 106
++ W + K NG ++ R I++ N++ I EHN + TY +GLN+F D+T E
Sbjct: 4 LWHQWKRMYNKEYNG-ADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62
Query: 107 EYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDE-LPESVDWREKGAVNPVKDQGSCGSC 165
E++A YL S A S + S +A + +P+ +DWRE G V VKDQG+CGS
Sbjct: 63 EFKAKYLTEMSRA------SDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSG 116
Query: 166 WAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI-NAGCNGGLMDYAFQFIIQNGGMDS 224
WAFST +EG IS SEQ+LVDC R N GC GGLM+ A+Q++ Q G +++
Sbjct: 117 WAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQFG-LET 175
Query: 225 EQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAV-ADQPVSVAIEAGGRAF 283
E YPY E +C +++ V + G+ V E+ LK V A+ P +VA++ F
Sbjct: 176 ESSYPYTAVEGQCRYNKQ-LGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES-DF 233
Query: 284 QHYESGVFTGECGSAL--DHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341
Y SG++ + S L +H V+AVGYGT+ G DYW+V+NSWG WGE GY+++ RN
Sbjct: 234 MMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRN--- 290
Query: 342 TNTGKCGIAMEASYPV 357
CGIA AS P+
Sbjct: 291 -RGNMCGIASLASLPM 305
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 209 bits (531), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/226 (52%), Positives = 146/226 (64%), Gaps = 18/226 (7%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGSCWAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE---- 311
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 312 NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/226 (52%), Positives = 146/226 (64%), Gaps = 18/226 (7%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGSCWAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDAGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE---- 311
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 312 NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 219
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 146/228 (64%), Gaps = 18/228 (7%)
Query: 140 ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-R 198
E P SVDWREKG V PVK+QG CGS WAFS A+EG TG LISLSEQ LVDC
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVS 256
+ N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI- 116
Query: 257 PFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE-- 311
P E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 117 PKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFEST 176
Query: 312 --NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 220
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 145/226 (64%), Gaps = 18/226 (7%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGS WAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE---- 311
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 312 NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 145/226 (64%), Gaps = 18/226 (7%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGS WAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTE---- 311
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 312 NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
+ YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 219
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 145/226 (64%), Gaps = 18/226 (7%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGS WAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDAGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTENGVD 315
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E+
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTES 177
Query: 316 ----YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 178 DDNKYWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 219
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/220 (50%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+SVD+REKG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G E C +P+ + AK GY ++ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG G +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKH 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG +WG GY+K+ RN CGIA AS+P
Sbjct: 178 WIIKNSWGENWGMGGYIKMARN----KNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+SVD+R+KG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G E C +P+ + AK GY ++ +
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 116
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG + G +
Sbjct: 117 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 176
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG +WG GY+ + RN CGIA AS+P
Sbjct: 177 WIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 212
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 142/222 (63%), Gaps = 13/222 (5%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC K
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 201 --NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVS 256
N GCNGG M AFQ+II N G+DS+ YPY + KC D + R A + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAA---TCRKYTELP 117
Query: 257 PFDEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGV 314
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG
Sbjct: 118 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 177
Query: 315 DYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
+YWLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 178 EYWLVKNSWGHNFGEKGYIRMARN----KGNHCGIASFPSYP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+SVD+R+KG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G E C +P+ + AK GY ++ +
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG + G +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG +WG GY+ + RN CGIA AS+P
Sbjct: 178 WIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 213
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 215
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+SVD+R+KG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 62
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G E C +P+ + AK GY ++ +
Sbjct: 63 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGN 119
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG + G +
Sbjct: 120 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKH 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG +WG GY+ + RN CGIA AS+P
Sbjct: 180 WIIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 122
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 123 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 182
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 216
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 173/309 (55%), Gaps = 24/309 (7%)
Query: 59 HGKTSNGMGHNEKRFQIFKDNLRFIDEHNSL----NRTYKVGLNKFADLTNEEYRAMYLG 114
H K+ + +R IFKDN+ I EHN+ TY +N+F D++ EE+ A
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYV-- 91
Query: 115 TRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAV 174
R A++ + + K L SVDWR AV+ VKDQG CGS W+FST AV
Sbjct: 92 NRGKAQKPKHPENLRMPYVSSK--KPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAV 148
Query: 175 EGINKIVTGELISLSEQELVDCDRKI-NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGA 233
EG + G L SLSEQ L+DC NAGC+GG MD AF +I + G+ SE YPY
Sbjct: 149 EGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI-HDYGIMSESAYPYEAQ 207
Query: 234 ENKC--DPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV 290
+ C D S+ V ++ GY D+ DE SL AV PV+VAI+A Q Y G+
Sbjct: 208 GDYCRFDSSQ---SVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDE-LQFYSGGL 263
Query: 291 FTGE-CG-SALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCG 348
F + C S L+HGV+ VGYG++NG DYW+++NSWGS WGE+GY + RN + CG
Sbjct: 264 FYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN----CG 319
Query: 349 IAMEASYPV 357
IA ASYP
Sbjct: 320 IATAASYPA 328
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCRKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARN----KGNHCGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 216
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+S+D+R+KG V PVK+QG CGSCWAFS+V A+EG K TG L++L+ Q LVDC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-N 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G + C +P+ + AK GY ++ +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y +GV+ E C S AL+H V+AVGYG + G +
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKH 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG WG GY+ + RN CGIA AS+P
Sbjct: 178 WIIKNSWGESWGNAGYILMARN----KNNACGIANLASFP 213
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 141/220 (64%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+CWAFS V A+E K+ TG+L++LS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 145/220 (65%), Gaps = 13/220 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P+S+D+R+KG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFD 259
GC GG M AFQ++ +N G+DSE YPY+G + C +P+ + AK GY ++ +
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKC---RGYREIPEGN 117
Query: 260 EMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDY 316
E +LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG + G +
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKH 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
W+++NSWG WG GY+ + RN CGIA AS+P
Sbjct: 178 WIIKNSWGESWGNKGYILMARN----KNNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 145/219 (66%), Gaps = 13/219 (5%)
Query: 143 ESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINA 202
+SVD+R+KG V PVK+QG CGSCWAFS+V A+EG K TG+L++LS Q LVDC + N
Sbjct: 1 DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-ND 59
Query: 203 GCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSRRNAKVVSIDGYEDVSPFDE 260
GC GG M AFQ++ +N G+DSE YPY+G E C +P+ + AK GY ++ +E
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKC---RGYREIPEGNE 116
Query: 261 MSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-CGS-ALDHGVVAVGYGTENGVDYW 317
+LK+AVA PVSVAI+A +FQ Y GV+ E C S L+H V+AVGYG + G +W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 318 LVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
+++NSWG +WG GY+ + RN CGIA AS+P
Sbjct: 177 IIKNSWGENWGNKGYILMARN----KNNACGIANLASFP 211
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 165/299 (55%), Gaps = 23/299 (7%)
Query: 72 RFQIFKDNLRFIDEHNSLNR----TYKVGLNKFADLTNEEYRAMYLG--TRSDAKRRLMK 125
R QIF+ L +EHN R +Y +G+N F D+T EE +A G +D + +
Sbjct: 42 RKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIP 101
Query: 126 SKVASQRYACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGEL 185
K + A P S DWR++G V+PVK+QGSCGS WAFS+ A+E KI G
Sbjct: 102 IKT-REDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAG 160
Query: 186 I--SLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKC--DPSR 241
S+SEQ+LVDC GC+GG M+ AF ++ QNGG+DSE YPY A+ C DP++
Sbjct: 161 YDSSVSEQQLVDCVPNA-LGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQ 219
Query: 242 RNAKVVSIDGYEDVSPFDEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGEC--GSA 298
A+ + GY +S DE L VA + PV+VA +A F Y GV+ +
Sbjct: 220 VAAR---LSGYVYLSGPDENMLADMVATKGPVAVAFDAD-DPFGSYSGGVYYNPTCETNK 275
Query: 299 LDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
H V+ VGYG ENG DYWLV+NSWG WG +GY K+ RN CGIA AS P
Sbjct: 276 FTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNA----NNHCGIAGVASVPT 330
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 140/220 (63%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+ WAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 215
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 143/221 (64%), Gaps = 11/221 (4%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CG+ +AFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDE 260
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + + + V + G+ D+ P E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS-VANDVGFVDI-PKQE 119
Query: 261 MSLKKAVAD-QPVSVAIEAGGRAFQHYESGVF--TGECGSALDHGVVAVGYG-TENGVDY 316
+L KAVA P+SVAI+AG +F Y+ G++ + S+L+H ++ VGYG N Y
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
WLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 216
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 140/220 (63%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+ WAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 120
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 140/220 (63%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+ WAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSK-YRAATCSKYTELPYG 121
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 122 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 181
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 140/220 (63%), Gaps = 9/220 (4%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDC--DR 198
LP+SVDWREKG V VK QGSCG+ WAFS V A+E K+ TG+L+SLS Q LVDC ++
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 199 KINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPF 258
N GCNGG M AFQ+II N G+DS+ YPY + KC + + + Y ++
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSK-YRAATCSKYTELPYG 119
Query: 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGV-FTGECGSALDHGVVAVGYGTENGVDY 316
E LK+AVA++ PVSV ++A +F Y SGV + C ++HGV+ VGYG NG +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356
WLV+NSWG ++GE GY+++ RN CGIA SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARN----KGNHCGIASFPSYP 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 140/226 (61%), Gaps = 11/226 (4%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P S+DWR+KGAV VKDQG+CG CWAF A+EGI+ I TG LIS+SEQ++VDCD
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEM 261
GG D AF+++I NGG+ S+ +YPY G + CD ++ A IDGY +V P
Sbjct: 62 XX-XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIA--ARIDGYTNV-PNSSS 117
Query: 262 SLKKAVADQPVSVAIEAGGRAFQHYE-SGVFTGECGS----ALDHGVVAVGYGTE-NGVD 315
+L AVA QPVSV I +FQ Y G+F G S +DH V+ VGYG+ D
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 316 YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQ 361
YW+V+NSWG++WG +GY+ ++RN + G C I SYP K++
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRN-TNRPDGVCAIDAWGSYPTKSTS 222
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 144/236 (61%), Gaps = 15/236 (6%)
Query: 140 ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRK 199
+ PES DW +KG + VK QG CGS WAFS A+E + I TG L+SLSEQEL+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 200 INAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGY------- 252
+ GC G +F++++++GG+ SE DYPY + KC + K V+ID Y
Sbjct: 61 -SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDK-VTIDNYGVQILSN 118
Query: 253 EDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFT-GECGS--ALDHGVVAVGYG 309
E E SL+ V +QP+SV+I+A + F Y G++ G C S ++H V+ VGYG
Sbjct: 119 ESTESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYG 176
Query: 310 TENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQNSAK 365
+E+GVDYW+ +NSWG DWG +GY+++QRN + G CG+ ASYP+ + K
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNL-LGVCGMNYFASYPIIEKSETLK 231
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 134/223 (60%), Gaps = 14/223 (6%)
Query: 142 PESVDWREKG-AVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKI 200
P S+DWR+KG V+PVK+QGSCGSCW FST A+E I TG+++SL+EQ+LVDC +
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 201 -NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFD 259
N GC GGL AF++I N G+ E YPY G ++ C + + + + +++ D
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCK-FQPDKAIAFVKDVANITMND 120
Query: 260 EMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTG-ECGSALD---HGVVAVGYGTENGV 314
E ++ +AVA PVS A E F Y G+++ C D H V+AVGYG ENG+
Sbjct: 121 EEAMVEAVALYNPVSFAFEVTND-FLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGI 179
Query: 315 DYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
YW+V+NSWG WG NGY ++R CG+A ASYP+
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIER-----GKNMCGLAACASYPI 217
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 10/177 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGSCWAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTEN 312
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E+
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 117/177 (66%), Gaps = 10/177 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCD-RKI 200
P SVDWREKG V PVK+QG CGS WAFS A+EG TG LISLSEQ LVDC +
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 201 NAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAK--VVSIDGYEDVSPF 258
N GCNGGLMDYAFQ++ NGG+DSE+ YPY E C + N K V + G+ D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC---KYNPKYSVANDTGFVDI-PK 117
Query: 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGV-FTGECGSA-LDHGVVAVGYGTEN 312
E +L KAVA P+SVAI+AG +F Y+ G+ F +C S +DHGV+ VGYG E+
Sbjct: 118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFES 174
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 128/201 (63%), Gaps = 9/201 (4%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P +VDWREKGAV PVKDQG CGSCWAFST+ +EG ++ L+SLSEQ LV CD I+
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCD-TID 60
Query: 202 AGCNGGLMDYAFQFIIQ-NGG-MDSEQDYPYLGAENKCDPSRRNAKVV--SIDGYEDVSP 257
GC GGLMD AF +I+ NGG + +E YPY+ + + N + +I + D+ P
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDL-P 119
Query: 258 FDEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDY 316
DE ++ +A+ P+++A++A +F Y G+ T LDHGV+ VGY + Y
Sbjct: 120 QDEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPPY 177
Query: 317 WLVRNSWGSDWGENGYVKLQR 337
W+++NSW + WGE+GY+++++
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEK 198
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P +VDWR +GAV VKDQG CGSCWAFS + VE + L +LSEQ LV CD K +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 202 AGCNGGLMDYAFQFIIQ--NGGMDSEQDYPYLGAENKCDPSRRNAKVV--SIDGYEDVSP 257
+GC+GGLM+ AF++I+Q NG + +E YPY E P + V +I G+ ++ P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL-P 119
Query: 258 FDEMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDY 316
DE + +A + PV+VA++A ++ Y GV T ALDHGV+ VGY V Y
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPY 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
W+++NSW + WGE GY+++ + + +C + EAS V
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAK-----GSNQCLVKEEASSAV 213
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 130/221 (58%), Gaps = 14/221 (6%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P +VDWR +GAV VKDQG CGSCWAFS + VE + L +LSEQ LV CD K +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 202 AGCNGGLMDYAFQFIIQ--NGGMDSEQDYPYLGAENKCDPSRRNAKVV--SIDGYEDVSP 257
+GC+GGLM+ AF++I+Q NG + +E YPY E P + V +I G+ ++ P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL-P 119
Query: 258 FDEMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDY 316
DE + +A + PV+VA++A ++ Y GV T LDHGV+ VGY V Y
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPY 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
W+++NSW + WGE GY+++ + + +C + EAS V
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAK-----GSNQCLVKEEASSAV 213
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 14/221 (6%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P +VDWR +GAV VKDQG CGSCWAFS + VE + L +L+EQ LV CD K +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 202 AGCNGGLMDYAFQFIIQ--NGGMDSEQDYPYLGAENKCDPSRRNAKVV--SIDGYEDVSP 257
+GC+GGLM+ AF++I+Q NG + +E YPY E P + V +I G+ ++ P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL-P 119
Query: 258 FDEMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDY 316
DE + +A + PV+VA++A ++ Y GV T LDHGV+ VGY V Y
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPY 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
W+++NSW + WGE GY+++ + + +C + EAS V
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAK-----GSNQCLVKEEASSAV 213
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 14/221 (6%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P +VDWR +GAV VKDQG CGSCWAFS + VE + L +L+EQ LV CD K +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 202 AGCNGGLMDYAFQFIIQ--NGGMDSEQDYPYLGAENKCDPSRRNAKVV--SIDGYEDVSP 257
+GC+GGLM+ AF++I+Q NG + +E YPY E P + V +I G+ ++ P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVEL-P 119
Query: 258 FDEMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDY 316
DE + +A + PV+VA++A ++ Y GV T LDHGV+ VGY V Y
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPY 177
Query: 317 WLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
W+++NSW + WGE GY+++ + + +C + EAS V
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAK-----GSNQCLVKEEASSAV 213
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 19/224 (8%)
Query: 146 DWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCN 205
DWR V PVKDQ +CGSCWAFS++ +VE I +LI+LSEQELVDC K N GCN
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCN 81
Query: 206 GGLMDYAFQFIIQNGGMDSEQDYPYLG-AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLK 264
GGL++ AF+ +I+ GG+ + DYPY+ A N C+ R K G ++ + LK
Sbjct: 82 GGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKY----GIKNYLSVPDNKLK 137
Query: 265 KAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVD-------- 315
+A+ P+S+++ A F Y+ G+F GECG L+H V+ VG+G + V+
Sbjct: 138 EALRFLGPISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEK 196
Query: 316 --YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
Y++++NSWG WGE G++ ++ + KCG+ +A P+
Sbjct: 197 HYYYIIKNSWGQQWGERGFINIETDESGL-MRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 131/224 (58%), Gaps = 19/224 (8%)
Query: 146 DWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCN 205
DWR V PVKDQ +CGS WAFS++ +VE I +LI+LSEQELVDC K N GCN
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NYGCN 80
Query: 206 GGLMDYAFQFIIQNGGMDSEQDYPYLG-AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLK 264
GGL++ AF+ +I+ GG+ + DYPY+ A N C+ R K G ++ + LK
Sbjct: 81 GGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKY----GIKNYLSVPDNKLK 136
Query: 265 KAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVD-------- 315
+A+ P+S+++ A F Y+ G+F GECG L+H V+ VG+G + V+
Sbjct: 137 EALRFLGPISISV-AVSDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEK 195
Query: 316 --YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
Y++++NSWG WGE G++ ++ + KCG+ +A P+
Sbjct: 196 HYYYIIKNSWGQQWGERGFINIETDESGL-MRKCGLGTDAFIPL 238
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 124/227 (54%), Gaps = 21/227 (9%)
Query: 144 SVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAG 203
+ DWR G V PVKDQ CGSCWAFS+V +VE I L SEQELVDC K N G
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNG 81
Query: 204 CNGGLMDYAFQFIIQNGGMDSEQDYPYLG-AENKCDPSRRNAKVVSIDGYEDVSPFDEMS 262
C GG + AF +I GG+ S+ DYPY+ C+ R N + +I Y VS D+
Sbjct: 82 CYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNER-YTIKSY--VSIPDDKF 138
Query: 263 LKKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVD------- 315
+ P+S++I A F Y G + GECG+A +H V+ VGYG ++ +
Sbjct: 139 KEALRYLGPISISI-AASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRME 197
Query: 316 ---YWLVRNSWGSDWGENGYVKLQRNLLDTNTGK--CGIAMEASYPV 357
Y++++NSWGSDWGE GY+ L+ D N K C I EA P+
Sbjct: 198 KFYYYIIKNSWGSDWGEGGYINLET---DENGYKKTCSIGTEAYVPL 241
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKIN 201
P DWR KGAV VKDQG CGSCWAFS VEG + G L+SLSEQEL+DCD K++
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMD 60
Query: 202 AGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEM 261
C GGL A+ I GG+++E DY Y G C S AKV D E +E
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQ--NEQ 118
Query: 262 SLKKAVADQ-PVSVAIEAGGRAF-QHYESGVFTGECGSAL-DHGVVAVGYGTENGVDYWL 318
L +A + P+SVAI A G F +H S C L DH V+ VGYG + V +W
Sbjct: 119 KLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWA 178
Query: 319 VRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
++NSWG+DWGE GY L R +G CG+ AS V
Sbjct: 179 IKNSWGTDWGEKGYYYLHR-----GSGACGVNTMASSAV 212
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 114/209 (54%), Gaps = 11/209 (5%)
Query: 134 ACKAGD-ELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQE 192
AC+ +P +D R V P++ QG CGSCWAFS VAA E + LSEQE
Sbjct: 3 ACRINSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQE 62
Query: 193 LVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGY 252
LVDC + GC+G + ++I QNG ++ E+ YPY+ E +C R N++ I Y
Sbjct: 63 LVDCASQ--HGCHGDTIPRGIEYIQQNGVVE-ERSYPYVAREQRC--RRPNSQHYGISNY 117
Query: 253 EDVSPFDEMSLKKAVADQPVSVAIEAG---GRAFQHYES-GVFTGECGSALD-HGVVAVG 307
+ P D +++A+ ++A+ G RAFQHY+ + + G + H V VG
Sbjct: 118 CQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVG 177
Query: 308 YGTENGVDYWLVRNSWGSDWGENGYVKLQ 336
YG+ G DYW+VRNSW + WG++GY Q
Sbjct: 178 YGSTQGDDYWIVRNSWDTTWGDSGYGYFQ 206
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 129/249 (51%), Gaps = 10/249 (4%)
Query: 96 GLNKFADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREKGAVNP 155
+N +DL+ +E++ +L + + + + ++ AC P +D R+ V P
Sbjct: 45 AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTP 104
Query: 156 VKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQF 215
++ QG CGS WAFS VAA E + + L+EQELVDC + GC+G + ++
Sbjct: 105 IRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQ--HGCHGDTIPRGIEY 162
Query: 216 IIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVA 275
IQ+ G+ E Y Y+ E C R NA+ I Y + P + +++A+A ++A
Sbjct: 163 -IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIA 219
Query: 276 IEAGGR---AFQHYE-SGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGEN 330
+ G + AF+HY+ + + G + H V VGY GVDYW+VRNSW ++WG+N
Sbjct: 220 VIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN 279
Query: 331 GYVKLQRNL 339
GY N+
Sbjct: 280 GYGYFAANI 288
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 10/211 (4%)
Query: 134 ACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQEL 193
AC P +D R+ V P++ QG CGSCWAFS VAA E + + L+EQEL
Sbjct: 3 ACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQEL 62
Query: 194 VDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYE 253
VDC + GC+G + ++ IQ+ G+ E Y Y+ E C R NA+ I Y
Sbjct: 63 VDCASQ--HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYC 117
Query: 254 DVSPFDEMSLKKAVADQPVSVAIEAGGR---AFQHYES-GVFTGECGSALD-HGVVAVGY 308
+ P + +++A+A ++A+ G + AF+HY+ + + G + H V VGY
Sbjct: 118 QIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY 177
Query: 309 GTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
GVDYW+VRNSW ++WG+NGY N+
Sbjct: 178 SNAQGVDYWIVRNSWDTNWGDNGYGYFAANI 208
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 10/211 (4%)
Query: 134 ACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQEL 193
AC P +D R+ V P++ QG CGSCWAFS VAA E + + L+EQEL
Sbjct: 3 ACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQEL 62
Query: 194 VDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYE 253
VDC + GC+G + ++ IQ+ G+ E Y Y+ E C R NA+ I Y
Sbjct: 63 VDCASQ--HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYC 117
Query: 254 DVSPFDEMSLKKAVADQPVSVAIEAGGR---AFQHYES-GVFTGECGSALD-HGVVAVGY 308
+ P + +++A+A ++A+ G + AF+HY+ + + G + H V VGY
Sbjct: 118 QIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY 177
Query: 309 GTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
GVDYW+VRNSW ++WG+NGY N+
Sbjct: 178 SNAQGVDYWIVRNSWDTNWGDNGYGYFAANI 208
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 111/211 (52%), Gaps = 10/211 (4%)
Query: 134 ACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQEL 193
AC P +D R+ V P++ QG CGS WAFS VAA E + + L+EQEL
Sbjct: 3 ACSINGNAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQEL 62
Query: 194 VDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYE 253
VDC + GC+G + ++ IQ+ G+ E Y Y+ E C R NA+ I Y
Sbjct: 63 VDCASQ--HGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYC 117
Query: 254 DVSPFDEMSLKKAVADQPVSVAIEAGGR---AFQHYES-GVFTGECGSALD-HGVVAVGY 308
+ P + +++A+A ++A+ G + AF+HY+ + + G + H V VGY
Sbjct: 118 QIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGY 177
Query: 309 GTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
GVDYW+VRNSW ++WG+NGY N+
Sbjct: 178 SNAQGVDYWIVRNSWDTNWGDNGYGYFAANI 208
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 158/320 (49%), Gaps = 51/320 (15%)
Query: 74 QIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLG---TRSDA-KRRLMKSKVA 129
+++K + F+ N++ +++ T EY + LG RS R++ + K A
Sbjct: 142 RLYKYDHNFVKAINAIQKSWTA-------TTYMEYETLTLGDMIRRSGGHSRKIPRPKPA 194
Query: 130 SQRYACKAGDE-LPESVDWREKGAVN---PVKDQGSCGSCWAFSTVAAVEGINKIVT--G 183
+ LP S DWR +N PV++Q SCGSC++F+++ +E +I+T
Sbjct: 195 PLTAEIQQKILFLPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNS 254
Query: 184 ELISLSEQELVDCDRKINAGCNGGLMDYAFQFII-----QNGGMDSEQDYPYLGAENKCD 238
+ LS QE+V C + GC GG F ++I Q+ G+ E +PY G ++ C
Sbjct: 255 QTPILSPQEVVSCSQYAQ-GCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCK 308
Query: 239 PSRRNAKVVSIDGYEDVSPF----DEMSLK-KAVADQPVSVAIEAGGRAFQHYESGVF-- 291
+ S + Y V F +E +K + V P++VA E F HY+ G++
Sbjct: 309 MKEDCFRYYSSE-YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDD-FLHYKKGIYHH 366
Query: 292 TG-----ECGSALDHGVVAVGYGTEN--GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNT 344
TG +H V+ VGYGT++ G+DYW+V+NSWG+ WGENGY +++R T
Sbjct: 367 TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR-----GT 421
Query: 345 GKCGI--AMEASYPVKNSQN 362
+C I A+ P+ +N
Sbjct: 422 DECAIESIAVAATPIPKLEN 441
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 121/232 (52%), Gaps = 35/232 (15%)
Query: 141 LPESVDWREKGAVN---PVKDQGSCGSCWAFSTVAAVEGINKIVT--GELISLSEQELVD 195
LPES DWR +N PV++Q SCGSC++F+++ +E +I+T + LS QE+V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 196 CDRKINAGCNGGLMDYAFQFII-----QNGGMDSEQDYPYLGAENKCDPSRRNAKVVSID 250
C GC+GG F ++I Q+ G+ E +PY + C P + S +
Sbjct: 266 CS-PYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYYSSE 319
Query: 251 GYEDVSPF---DEMSLK-KAVADQPVSVAIEAGGRAFQHYESGVF--TGECGS-----AL 299
Y + +E +K + V P++VA E F HY SG++ TG
Sbjct: 320 YYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDD-FLHYHSGIYHHTGLSDPFNPFELT 378
Query: 300 DHGVVAVGYGTE--NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGI 349
+H V+ VGYG + G+DYW+V+NSWGS WGE+GY +++R T +C I
Sbjct: 379 NHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRR-----GTDECAI 425
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 38/236 (16%)
Query: 140 ELPESVDWREK----GAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG--ELISLSEQEL 193
E+P S D R+K ++ ++DQ CGSCWAF V A+ + I +G + + LS +L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 194 VDCDRKINAGCNGGLMDYAFQFIIQNG---GMDSE-----QDYPYLGAEN---------- 235
+ C GC GG++ A+ + ++ G G E + YP+ E+
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCG 121
Query: 236 -------KCDPS--RRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVA-IEAGGRAFQ- 284
+C + ++ + D + S ++ + +KA+ + + +EAG ++
Sbjct: 122 SKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYED 181
Query: 285 --HYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQR 337
+Y+SG++ G L H + +G+G EN YWL+ NSW DWGENGY ++ R
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 139/333 (41%), Gaps = 56/333 (16%)
Query: 68 HNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKF-ADLTNEEYRAMYLGTRSDAKRRLMKS 126
H++ F D++ I+ N N T++ G N + D++ Y GT ++
Sbjct: 1 HDKPSFHPLSDDM--INYINKQNTTWQAGRNFYNVDIS---YLKKLCGT-------VLGG 48
Query: 127 KVASQRYACKAGDELPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVT 182
+R LPES D RE+ + P ++DQGSCGS WAF V A+ I T
Sbjct: 49 PKLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHT 108
Query: 183 GELISL---SEQELVDCDRKINAGCNGGLMDYAFQF-----IIQNGGMDSEQD-YPYL-- 231
+++ +E L C + GCNGG A+ F ++ G +S PY
Sbjct: 109 NGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIP 168
Query: 232 -------GAENKCDPSRRNAKVVSI------DGYEDVSPFDEMSLKKAVADQPVSVAIEA 278
GA C K + Y++ + S + +++ + I
Sbjct: 169 PCEHHVNGARPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYK 228
Query: 279 GGRA---------FQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWG 328
G F Y+SGV+ E G + H + +G+G ENGV YWLV NSW +DWG
Sbjct: 229 NGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWG 288
Query: 329 ENGYVKLQRNLLDTNTGKCGIAMEASYPVKNSQ 361
+NG+ K+ R CGI E + +Q
Sbjct: 289 DNGFFKILR-----GENHCGIESEIVAGIPRTQ 316
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 113/259 (43%), Gaps = 43/259 (16%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQEL 193
LPES D RE+ + P ++DQGSCGSCWAF V A+ I T +++ +E L
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 194 VDCDRKINAGCNGGLMDYAFQF-----IIQNGGMDSEQD-YPYL---------GAENKCD 238
C + GCNGG A+ F ++ G +S PY GA C
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 239 PSRRNAKVVSI------DGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRA---------F 283
K + Y++ + S + +++ + I G F
Sbjct: 127 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 186
Query: 284 QHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDT 342
Y+SGV+ E G + H + +G+G ENGV YWLV NSW +DWG+NG+ K+ R
Sbjct: 187 LTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR----- 241
Query: 343 NTGKCGIAMEASYPVKNSQ 361
CGI E + +Q
Sbjct: 242 GENHCGIESEIVAGIPRTQ 260
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 113/259 (43%), Gaps = 43/259 (16%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQEL 193
LPES D RE+ + P ++DQGSCGSCWAF V A+ I T +++ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 194 VDCDRKINAGCNGGLMDYAFQF-----IIQNGGMDSEQD-YPYL---------GAENKCD 238
C + GCNGG A+ F ++ G +S PY GA C
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 239 PSRRNAKVVSI------DGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRA---------F 283
K + Y++ + S + +++ + I G F
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDF 180
Query: 284 QHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDT 342
Y+SGV+ E G + H + +G+G ENGV YWLV NSW +DWG+NG+ K+ R
Sbjct: 181 LTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILR----- 235
Query: 343 NTGKCGIAMEASYPVKNSQ 361
CGI E + +Q
Sbjct: 236 GENHCGIESEIVAGIPRTQ 254
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/321 (27%), Positives = 125/321 (38%), Gaps = 58/321 (18%)
Query: 73 FQIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLGTRSDAKRRLMKSKVASQR 132
F D L ++ N N T++ G N + + Y GT + QR
Sbjct: 7 FHPLSDEL--VNYVNKRNTTWQAGHNFYN--VDMSYLKRLCGT-------FLGGPKPPQR 55
Query: 133 YACKAGDELPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL 188
+LP S D RE+ P ++DQGSCGSCWAF V A+ I T +S+
Sbjct: 56 VMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSV 115
Query: 189 ---SEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDS--------------------- 224
+E L C GCNGG A+ F + G +
Sbjct: 116 EVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHV 175
Query: 225 ---------EQDYPYLG--AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVS 273
E D P E P+ + K + Y VS ++ + + + PV
Sbjct: 176 NGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYS-VSNSEKDIMAEIYKNGPVE 234
Query: 274 VAIEAGGRAFQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGY 332
A F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+
Sbjct: 235 GAFSVYSD-FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGF 293
Query: 333 VKLQRNLLDTNTGKCGIAMEA 353
K+ R CGI E
Sbjct: 294 FKILR-----GQDHCGIESEV 309
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 140 ELPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQE 192
+LP S D RE+ P ++DQGSCGSCWAF V A+ I T +S+ +E
Sbjct: 2 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 61
Query: 193 LVDCDRKINAGCNGGLMDYAFQFIIQNGGMDS---------------------------- 224
L C GCNGG A+ F + G +
Sbjct: 62 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 225 --EQDYPYLG--AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGG 280
E D P E P+ + K + Y VS ++ + + + PV A
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNSEKDIMAEIYKNGPVEGAFSVY- 179
Query: 281 RAFQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 180 SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR-- 237
Query: 340 LDTNTGKCGIAMEA 353
CGI E
Sbjct: 238 ---GQDHCGIESEV 248
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 140 ELPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQE 192
+LP S D RE+ P ++DQGSCGSCWAF V A+ I T +S+ +E
Sbjct: 1 KLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDL 60
Query: 193 LVDCDRKINAGCNGGLMDYAFQFIIQNGGMDS---------------------------- 224
L C GCNGG A+ F + G +
Sbjct: 61 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 225 --EQDYPYLG--AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGG 280
E D P E P+ + K + Y VS ++ + + + PV A
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNSEKDIMAEIYKNGPVEGAFSVY- 178
Query: 281 RAFQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 179 SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR-- 236
Query: 340 LDTNTGKCGIAMEA 353
CGI E
Sbjct: 237 ---GQDHCGIESEV 247
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 104/253 (41%), Gaps = 47/253 (18%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQEL 193
LP S D RE+ P ++DQGSCGSCWAF V A+ I T +S+ +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 194 VDCDRKINAGCNGGLMDYAFQFIIQNGGMDS----------------------------- 224
C GCNGG A+ F + G +
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 225 -EQDYPYLG--AENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGR 281
E D P E P+ + K + Y VS ++ + + + PV A
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNSEKDIMAEIYKNGPVEGAFSVY-S 178
Query: 282 AFQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLL 340
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR--- 235
Query: 341 DTNTGKCGIAMEA 353
CGI E
Sbjct: 236 --GQDHCGIESEV 246
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 137/315 (43%), Gaps = 42/315 (13%)
Query: 82 FIDEHNSLNR-TYKVGLNK-FADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGD 139
F+D N LNR +K + ++T E + + + + ++ + ++ +A
Sbjct: 14 FVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEE---EARA 70
Query: 140 ELPESVD----WREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELV 194
LP S D W + + DQ +CGSCWA + +A+ + G + + +S +L+
Sbjct: 71 PLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLL 130
Query: 195 DCDRKINAGCNGGLMDYAFQFIIQNGGM-DSEQDYPYLGAEN------------------ 235
C GCNGG D A+ + G + D Q YP+ +
Sbjct: 131 ACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 236 -KCDPSRRNAKVVSIDGYEDVSPF----DEMSLKKAVADQPVSVAIEAGGRAFQHYESGV 290
KCD + + + ++ Y + + ++ +++ P VA + F Y SGV
Sbjct: 191 PKCDYTCDDPTIPVVN-YRSWTSYALQGEDDYMRELFFRGPFEVAFDVY-EDFIAYNSGV 248
Query: 291 FTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGI 349
+ G L H V VG+GT NGV YW + NSW ++WG +GY ++R + +CGI
Sbjct: 249 YHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR-----GSSECGI 303
Query: 350 AMEASYPVKNSQNSA 364
S + + N+A
Sbjct: 304 EDGGSAGIPLAPNTA 318
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 107/253 (42%), Gaps = 47/253 (18%)
Query: 140 ELPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAVEGINKIVTGELISL---SEQE 192
+LP S D RE+ P ++DQGSCGS WAF V A+ I T +S+ +E
Sbjct: 6 KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDL 65
Query: 193 LVDCDRKINAGCNGGLMDYAFQF-----IIQNGGMDSEQDY-PYL---------GAENKC 237
L C GCNGG A+ F ++ G +S PY GA C
Sbjct: 66 LTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 238 -----------------DPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGG 280
P+ + K + Y VS ++ + + + PV A
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSY-SVSNSEKDIMAEIYKNGPVEGAFSVYS 184
Query: 281 RAFQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNL 339
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 185 D-FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR-- 241
Query: 340 LDTNTGKCGIAME 352
CGI E
Sbjct: 242 ---GQDHCGIESE 251
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 39/225 (17%)
Query: 140 ELPESVDWREKGAVN---PVKDQ---GSCGSCWAF-STVAAVEGINKIVTGELIS--LSE 190
+LP+S DWR VN ++Q CGSCWA ST A + IN G S LS
Sbjct: 35 DLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSV 94
Query: 191 QELVDCDRKINAG-CNGG----LMDYAFQFIIQNGGMDSEQDYPYLGAENKCDP------ 239
Q ++DC NAG C GG + DYA Q G+ E Y + +CD
Sbjct: 95 QNVIDCG---NAGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGT 146
Query: 240 --------SRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVF 291
+ RN + + Y +S ++M + + A+ P+S I A R +Y G++
Sbjct: 147 CNEFKECHAIRNYTLWRVGDYGSLSGREKM-MAEIYANGPISCGIMATER-LANYTGGIY 204
Query: 292 TG-ECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKL 335
+ + ++H V G+G +G +YW+VRNSWG WGE G++++
Sbjct: 205 AEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 132/316 (41%), Gaps = 44/316 (13%)
Query: 82 FIDEHNSLNR-TYKVGLNK-FADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGD 139
F+D N LNR +K + ++T E + + + + ++ + ++ +A
Sbjct: 36 FVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEE---EARA 92
Query: 140 ELPESVD----WREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELV 194
LP S D W + + DQ +CGSCWA + +A+ + G + + +S +L+
Sbjct: 93 PLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLL 152
Query: 195 DCDRKINAGCNGGLMDYAFQFIIQNGGM-DSEQDYPYLGAEN------------------ 235
C GCNGG D A+ + G + D Q YP+ +
Sbjct: 153 ACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 236 -KC-----DPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESG 289
KC DP+ S Y D M ++ P VA + F Y SG
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYM--RELFFRGPFEVAFDVY-EDFIAYNSG 269
Query: 290 VFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCG 348
V+ G L H V VG+GT NGV YW + NSW ++WG +GY ++R + +CG
Sbjct: 270 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR-----GSSECG 324
Query: 349 IAMEASYPVKNSQNSA 364
I S + + N+A
Sbjct: 325 IEDGGSAGIPLAPNTA 340
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 39/224 (17%)
Query: 141 LPESVDWREKGAVN---PVKDQG---SCGSCWAF-STVAAVEGINKIVTGELIS--LSEQ 191
LP+S DWR VN ++Q CGSCWA ST A + IN G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 192 ELVDCDRKINAG-CNGG----LMDYAFQFIIQNGGMDSEQDYPYLGAENKCDP------- 239
++DC NAG C GG + DYA Q G+ E Y + +CD
Sbjct: 61 NVIDCG---NAGSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQECDKFNQCGTC 112
Query: 240 -------SRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFT 292
+ RN + + Y +S ++M + + A+ P+S I A R +Y G++
Sbjct: 113 NEFKECHAIRNYTLWRVGDYGSLSGREKM-MAEIYANGPISCGIMATER-LANYTGGIYA 170
Query: 293 G-ECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKL 335
+ + ++H V G+G +G +YW+VRNSWG WGE G++++
Sbjct: 171 EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 132/316 (41%), Gaps = 44/316 (13%)
Query: 82 FIDEHNSLNR-TYKVGLNK-FADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGD 139
F+D N LNR +K + ++T E + + + + ++ + ++ +A
Sbjct: 13 FVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTEE---EARA 69
Query: 140 ELPESVD----WREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELV 194
LP S D W + + DQ +CGSCWA + +A+ + G + + +S +L+
Sbjct: 70 PLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLL 129
Query: 195 DCDRKINAGCNGGLMDYAFQFIIQNGGM-DSEQDYPYLGAEN------------------ 235
C GCNGG D A+ + G + D Q YP+ +
Sbjct: 130 ACCSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 236 -KC-----DPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESG 289
KC DP+ S Y D M ++ P VA + F Y SG
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYM--RELFFRGPFEVAFDVY-EDFIAYNSG 246
Query: 290 VFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCG 348
V+ G L H V VG+GT NGV YW + NSW ++WG +GY ++R + +CG
Sbjct: 247 VYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRR-----GSSECG 301
Query: 349 IAMEASYPVKNSQNSA 364
I S + + N+A
Sbjct: 302 IEDGGSAGIPLAPNTA 317
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 141 LPESVDWREKGAVN---PVKDQGSCGSCWAFSTVAAVEGINKIVT--GELISLSEQELVD 195
LP S DWR +N PV++Q SCGSC++F+++ +E +I+T + LS QE+V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 196 CDRKINAGCNGGLMDYAFQFII-----QNGGMDSEQDYPYLGAENKCDPSRRNAKVVSID 250
C + GC GG F ++I Q+ G+ E +PY G ++ C + S +
Sbjct: 61 CSQYAQ-GCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 114
Query: 251 GYEDVSPF----DEMSLK-KAVADQPVSVAIEAGGRAFQHYESGVF 291
Y V F +E +K + V P++VA E F HY+ G++
Sbjct: 115 -YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDD-FLHYKKGIY 158
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 60.8 bits (146), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 7/52 (13%)
Query: 300 DHGVVAVGYGTEN--GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGI 349
+H V+ VGYGT++ G+DYW+V+NSWG+ WGENGY +++R T +C I
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR-----GTDECAI 56
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 283 FQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---- 235
Query: 342 TNTGKCGIAME 352
CGI E
Sbjct: 236 -GQDHCGIESE 245
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAV 174
LPES D RE+ P ++DQGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 283 FQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR---- 235
Query: 342 TNTGKCGIAME 352
CGI E
Sbjct: 236 -GQDHCGIESE 245
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAV 174
LPES D RE+ P ++DQGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 283 FQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 131 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR---- 186
Query: 342 TNTGKCGIAMEA 353
CGI E
Sbjct: 187 -GQDHCGIESEV 197
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 283 FQHYESGVFTGECGSALD-HGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341
F Y+SGV+ G + H + +G+G ENG YWLV NSW +DWG+NG+ K+ R
Sbjct: 132 FLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILR---- 187
Query: 342 TNTGKCGIAME 352
CGI E
Sbjct: 188 -GQDHCGIESE 197
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 156 VKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAG-CNGGLMDYAFQ 214
V+DQG+C + W F++ +E I + E +S + +C + + C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 215 FIIQN-GGMDSEQDYPY--LGAENKCDPSRR-------NAKVV-------SIDG-----Y 252
II++ G + +E +YPY + +C N K++ S+DG Y
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 253 EDVSPFDEMS-----LKKAVADQPVSVA-IEAGGRAFQHYESGVFTGECGS-ALDHGVVA 305
E D M +K V ++ +A I+A + CG DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 306 VGYGTENGVD-----YWLVRNSWGSDWGENGYVKL 335
VGYG + YW+VRNSWG WG+ GY K+
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 156 VKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAG-CNGGLMDYAFQ 214
V+DQG+C + W F++ +E I + E +S + +C + + C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 215 FIIQN-GGMDSEQDYPY--LGAENKCDPSRR-------NAKVV-------SIDG-----Y 252
II++ G + +E +YPY + +C N K++ S+DG Y
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 253 EDVSPFDEMS-----LKKAVADQPVSVA-IEAGGRAFQHYESGVFTGECGS-ALDHGVVA 305
E D M +K V ++ +A I+A + CG DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 306 VGYGTENGVD-----YWLVRNSWGSDWGENGYVKL 335
VGYG + YW+VRNSWG WG+ GY K+
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 316 YWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357
YWLV+NSWG +WG GYVK+ ++ + CGIA ASYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRN----HCGIASAASYPT 41
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 70 EKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLGTRSDAKRRLMKS 126
++R+ IFK+NL +I HN +Y + +N F DL+ +E+R YLG + K R +KS
Sbjct: 43 QRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFK---KSRNLKS 96
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 141 LPESVDWREK----GAVNPVKDQGSCGSCWAFSTVAAV 174
LPES D RE+ + ++DQGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 141 LPESVDWREKGAVNP----VKDQGSCGSCWAFSTVAAV 174
LP S D RE+ P ++DQGSCGSCWAF V A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 86/216 (39%), Gaps = 30/216 (13%)
Query: 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAV--EGINKIVTGELISLSEQELVDCDR 198
LP VD V DQG GSC A + AA+ E I+ + E I S + +R
Sbjct: 57 LPPKVDLTPPFQV---YDQGRIGSCTANALAAAIQFERIHDKQSPEFIP-SRLFIYYNER 112
Query: 199 KINAGCN--GGLMDYAFQFIIQNGGMDSEQDYPY--LGAENKCD---PSRRNAKVVSIDG 251
KI N G M ++ G+ E+++PY A+ + + P +K S
Sbjct: 113 KIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQC 172
Query: 252 YEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQH----YESGVFTGECGSALD------- 300
Y+D + + D A A G F Y S V +
Sbjct: 173 YKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDT 232
Query: 301 ----HGVVAVGYGTENGVDYWLVRNSWGSDWGENGY 332
H V+ VGY E + ++ +RNSWG++ GE+GY
Sbjct: 233 LEGGHAVLCVGYDDE--IRHFRIRNSWGNNVGEDGY 266
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 72 RFQIFKDNLRFIDEHNSL----NRTYKVGLNKFADLTNEEY 108
R +I+ ++ I+EHN T+K+G+N ADLT EE+
Sbjct: 29 RRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF 69
>pdb|3MAO|A Chain A, Crystal Structure Of Human Methionine-R-Sulfoxide
Reductase B1 (Msrb1)
Length = 105
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 24/74 (32%)
Query: 34 NNHDHSSSWRTDDEVMTIYQTWLAKH-------------GKTSNGMGHN---------EK 71
+ + HSS W E TI+ +AK GK NG+GH +
Sbjct: 28 SKYAHSSPWPAFTE--TIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQS 85
Query: 72 RFQIFKDNLRFIDE 85
RF IF +L+F+ +
Sbjct: 86 RFSIFSSSLKFVPK 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,337,768
Number of Sequences: 62578
Number of extensions: 489816
Number of successful extensions: 1631
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 135
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)