Query 017419
Match_columns 372
No_of_seqs 310 out of 1983
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.1E-81 4.5E-86 580.3 24.6 297 48-358 67-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 2.2E-78 4.8E-83 584.8 36.2 296 47-356 33-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 6.1E-77 1.3E-81 590.9 31.1 313 39-359 157-489 (489)
4 PTZ00200 cysteine proteinase; 100.0 5.6E-75 1.2E-79 575.1 32.9 305 45-359 119-446 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1.5E-68 3.3E-73 512.8 29.7 288 56-358 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 8E-57 1.7E-61 418.0 22.1 208 141-356 1-240 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.7E-56 3.6E-61 414.6 23.4 211 141-357 1-237 (239)
8 cd02248 Peptidase_C1A Peptidas 100.0 1E-55 2.2E-60 401.3 22.7 207 142-356 1-210 (210)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 1.4E-55 3E-60 407.7 21.6 205 142-354 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1.6E-54 3.4E-59 394.8 18.4 213 141-357 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 1.1E-52 2.4E-57 425.9 22.6 215 138-360 378-678 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 2.6E-52 5.7E-57 419.2 23.6 209 138-356 202-459 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.7E-49 3.6E-54 350.5 18.3 167 141-353 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 7.1E-46 1.5E-50 338.4 20.0 193 144-339 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 2.2E-44 4.8E-49 374.8 22.5 207 153-365 544-788 (1004)
16 KOG1544 Predicted cysteine pro 100.0 6.9E-44 1.5E-48 326.2 8.0 265 81-355 151-457 (470)
17 COG4870 Cysteine protease [Pos 100.0 2.8E-30 6E-35 242.6 7.0 197 139-341 97-316 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 6.6E-23 1.4E-27 202.6 14.3 179 154-338 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 9.7E-17 2.1E-21 115.6 7.2 57 52-108 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 7.8E-16 1.7E-20 152.5 16.0 182 154-338 56-400 (438)
21 smart00848 Inhibitor_I29 Cathe 99.5 2.3E-14 4.9E-19 102.7 4.7 56 52-107 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.8 2.6E-08 5.5E-13 93.4 10.1 75 260-336 297-400 (444)
23 KOG4128 Bleomycin hydrolases a 97.4 0.00012 2.6E-09 69.0 2.9 75 154-229 63-167 (457)
24 PF13529 Peptidase_C39_2: Pept 97.1 0.0065 1.4E-07 50.4 10.9 56 259-323 88-144 (144)
25 PF08127 Propeptide_C1: Peptid 96.1 0.0042 9.2E-08 41.0 2.2 35 80-116 3-37 (41)
26 PF05543 Peptidase_C47: Stapho 96.1 0.074 1.6E-06 46.3 10.4 119 157-324 17-145 (175)
27 PF14399 Transpep_BrtH: NlpC/p 87.8 1.1 2.4E-05 42.8 5.9 53 260-319 78-131 (317)
28 COG4990 Uncharacterized protei 82.4 3.1 6.8E-05 36.5 5.4 51 254-324 117-168 (195)
29 cd02549 Peptidase_C39A A sub-f 73.6 10 0.00022 31.2 6.0 44 263-323 70-114 (141)
30 cd00044 CysPc Calpains, domain 71.9 17 0.00037 34.9 7.9 27 299-325 235-263 (315)
31 PF09778 Guanylate_cyc_2: Guan 69.0 19 0.00042 32.6 6.9 58 259-321 112-180 (212)
32 PF07172 GRP: Glycine rich pro 59.8 9.5 0.00021 30.0 2.9 23 1-24 1-24 (95)
33 PF12385 Peptidase_C70: Papain 58.8 1.2E+02 0.0026 26.2 9.8 38 259-311 97-135 (166)
34 PF15240 Pro-rich: Proline-ric 50.9 9 0.0002 33.7 1.5 18 6-26 1-18 (179)
35 PF09590 Env-gp36: Lentivirus 47.8 12 0.00026 38.1 2.1 72 4-82 150-243 (591)
36 KOG4702 Uncharacterized conser 44.0 81 0.0018 23.2 5.2 31 51-82 30-60 (77)
37 PF10731 Anophelin: Thrombin i 40.5 68 0.0015 22.9 4.3 39 1-40 1-41 (65)
38 PF01640 Peptidase_C10: Peptid 39.9 1.4E+02 0.003 26.4 7.5 50 262-334 142-192 (192)
39 PF11567 PfUIS3: Plasmodium fa 39.2 20 0.00044 27.5 1.6 30 67-108 18-47 (101)
40 PHA02291 hypothetical protein 32.8 41 0.0009 26.9 2.5 34 4-40 5-38 (132)
41 PF10717 ODV-E18: Occlusion-de 32.8 57 0.0012 24.9 3.1 21 6-26 30-50 (85)
42 TIGR01732 tiny_TM_bacill conse 31.5 46 0.00099 19.5 1.9 12 7-18 10-21 (26)
43 PF09680 Tiny_TM_bacill: Prote 31.1 48 0.001 19.1 1.9 11 7-17 8-18 (24)
44 PF06692 MNSV_P7B: Melon necro 29.7 65 0.0014 22.5 2.7 23 4-26 13-35 (61)
45 PF11043 DUF2856: Protein of u 27.8 1.6E+02 0.0036 22.2 4.8 59 27-88 1-63 (97)
46 PF11912 DUF3430: Protein of u 26.5 40 0.00087 30.0 1.8 28 6-33 1-30 (212)
47 smart00230 CysPc Calpain-like 26.5 1.2E+02 0.0025 29.3 5.0 27 299-325 227-255 (318)
48 COG4588 AcfC Accessory coloniz 26.0 1.1E+02 0.0023 27.8 4.2 49 6-62 1-49 (252)
49 COG4537 ComGC Competence prote 25.6 63 0.0014 25.6 2.4 18 4-21 17-34 (107)
50 KOG2675 Adenylate cyclase-asso 25.6 41 0.00088 33.7 1.7 13 71-83 9-21 (480)
51 PF08135 EPV_E5: Major transfo 25.2 99 0.0021 20.3 2.8 18 3-20 13-30 (44)
52 PF07127 Nodulin_late: Late no 25.0 78 0.0017 21.9 2.6 25 1-25 1-25 (54)
53 PF13623 SurA_N_2: SurA N-term 24.7 4.3E+02 0.0093 22.3 8.0 96 7-112 11-115 (145)
54 PRK14762 membrane protein; Pro 24.3 46 0.00099 19.3 1.0 9 12-20 10-18 (27)
55 PF03032 Brevenin: Brevenin/es 23.1 55 0.0012 22.1 1.4 21 6-26 3-23 (46)
56 PF10107 Endonuc_Holl: Endonuc 21.9 93 0.002 26.7 2.9 18 46-63 22-39 (156)
57 PF11873 DUF3393: Domain of un 21.8 83 0.0018 28.4 2.8 19 6-24 1-19 (204)
58 PF09125 COX2-transmemb: Cytoc 21.5 1.4E+02 0.0031 19.0 2.9 17 5-21 20-36 (38)
59 COG2825 HlpA Outer membrane pr 20.4 55 0.0012 28.6 1.3 30 6-35 3-32 (170)
60 PF11153 DUF2931: Protein of u 20.3 72 0.0016 28.8 2.1 21 6-26 1-21 (216)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-81 Score=580.30 Aligned_cols=297 Identities=43% Similarity=0.801 Sum_probs=259.6
Q ss_pred HHHHHHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCCCC-ceEEEcccCCCCCHHHHHHhhcCccchhhhhhhhc
Q 017419 48 VMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNR-TYKVGLNKFADLTNEEYRAMYLGTRSDAKRRLMKS 126 (372)
Q Consensus 48 ~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~-s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~ 126 (372)
..+.|..|+.+|+|+|.+.+|..+|+.||+.|+..+++++..+. |.+.|+|+|||||+|||++++++.+.. ..+.+..
T Consensus 67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~-~~~~~~~ 145 (372)
T KOG1542|consen 67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR-GSKLPGD 145 (372)
T ss_pred hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc-cccCccc
Confidence 47899999999999999999999999999999999999988765 899999999999999999999887653 1111111
Q ss_pred cccccccccccCCCCCCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCCCCCCCCC
Q 017419 127 KVASQRYACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNG 206 (372)
Q Consensus 127 ~~~~~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~~~~gC~G 206 (372)
...........||++||||++|.||||||||+||||||||+++++|+++.|++|++++||||+|+||+. .++||+|
T Consensus 146 ---~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC~G 221 (372)
T KOG1542|consen 146 ---AAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGCNG 221 (372)
T ss_pred ---cccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcCCC
Confidence 011111335789999999999999999999999999999999999999999999999999999999997 5899999
Q ss_pred CchhHHHHHHHHhCCCCCCCCCCcCCCCC-ccCCCCCCCeeEeecceeeCCcccHHHHHHHHh-CCCeEEEEEeCccccc
Q 017419 207 GLMDYAFQFIIQNGGMDSEQDYPYLGAEN-KCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVA-DQPVSVAIEAGGRAFQ 284 (372)
Q Consensus 207 G~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f~ 284 (372)
|.+..|++|+++.+|+..|++|||++..+ .|...+ ....+.|.+|..++. +|+.|.+.|. +|||+|+|++. .++
T Consensus 222 Gl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~-~~~~v~I~~f~~l~~-nE~~ia~wLv~~GPi~vgiNa~--~mQ 297 (372)
T KOG1542|consen 222 GLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDK-SKIVVSIKDFSMLSN-NEDQIAAWLVTFGPLSVGINAK--PMQ 297 (372)
T ss_pred CChhHHHHHHHHhCCccccccCCccccCCCccccch-hhceEEEeccEecCC-CHHHHHHHHHhcCCeEEEEchH--HHH
Confidence 99999999988989999999999999988 898764 556788999998876 5666766654 59999999974 799
Q ss_pred ccCCceEeC---CCCCC-CCeEEEEEEeeeeC-CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccceeee
Q 017419 285 HYESGVFTG---ECGSA-LDHGVVAVGYGTEN-GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVK 358 (372)
Q Consensus 285 ~y~~Giy~~---~~~~~-~~HaV~iVGyg~~~-g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~p~~ 358 (372)
.|.+||..+ .|... ++|||+|||||... .++|||||||||++|||+||+|+.|| .|.|||++.++-+++
T Consensus 298 ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG-----~N~CGi~~mvss~~v 371 (372)
T KOG1542|consen 298 FYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRG-----SNACGIADMVSSAAV 371 (372)
T ss_pred HhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecc-----ccccccccchhhhhc
Confidence 999999987 57765 89999999999987 89999999999999999999999999 467999999876654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.2e-78 Score=584.83 Aligned_cols=296 Identities=37% Similarity=0.737 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCCCCceEEEcccCCCCCHHHHHHhhcCccc-hhhhhhhh
Q 017419 47 EVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLGTRS-DAKRRLMK 125 (372)
Q Consensus 47 ~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~-~~~~~~~~ 125 (372)
++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||+++.+|++|+|+|+|||+|||++++++... ..... .
T Consensus 33 ~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~--~ 110 (348)
T PTZ00203 33 PAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAK--Q 110 (348)
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCccccccc--c
Confidence 46778999999999999998899999999999999999999877899999999999999999987764221 11000 0
Q ss_pred cccccccccc--ccCCCCCCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCCCCCC
Q 017419 126 SKVASQRYAC--KAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAG 203 (372)
Q Consensus 126 ~~~~~~~~~~--~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~~~~g 203 (372)
. ....+.. ....++|++||||++|+|+||||||.||||||||+++++|+++++++++.++||+|+|+||+.. +.|
T Consensus 111 ~--~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-~~G 187 (348)
T PTZ00203 111 H--AGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-DNG 187 (348)
T ss_pred c--ccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC-CCC
Confidence 0 0001111 1123689999999999999999999999999999999999999999999999999999999873 789
Q ss_pred CCCCchhHHHHHHHHh--CCCCCCCCCCcCCCCC---ccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEE
Q 017419 204 CNGGLMDYAFQFIIQN--GGMDSEQDYPYLGAEN---KCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIE 277 (372)
Q Consensus 204 C~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~ 277 (372)
|+||++..|++|+.++ +|+++|++|||.+.++ .|...........+.+|..++. +++.|+.+|.+ |||+|+++
T Consensus 188 C~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~ 266 (348)
T PTZ00203 188 CGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVD 266 (348)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEE
Confidence 9999999999999764 6799999999998766 5764322223456788887766 56778888875 99999999
Q ss_pred eCcccccccCCceEeCCCC-CCCCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCccccccccee
Q 017419 278 AGGRAFQHYESGVFTGECG-SALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356 (372)
Q Consensus 278 ~~~~~f~~y~~Giy~~~~~-~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~p 356 (372)
+. +|++|++|||+. |. ..++|||+|||||+++|++|||||||||++|||+|||||+|+ .|.|||++++...
T Consensus 267 a~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg-----~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 267 AS--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMG-----VNACLLTGYPVSV 338 (348)
T ss_pred hh--hhcCccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcC-----CCcccccceEEEE
Confidence 83 899999999985 64 457999999999998899999999999999999999999997 3569999666553
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=6.1e-77 Score=590.91 Aligned_cols=313 Identities=38% Similarity=0.685 Sum_probs=256.4
Q ss_pred CCCCCCchHHHHHHHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCC-CCceEEEcccCCCCCHHHHHHhhcCccc
Q 017419 39 SSSWRTDDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSL-NRTYKVGLNKFADLTNEEYRAMYLGTRS 117 (372)
Q Consensus 39 ~~~~~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~-~~s~~~g~N~FsD~t~eEf~~~~~~~~~ 117 (372)
.=|+...+ ...+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||++ +.+|++|+|+|+|||.|||++++++...
T Consensus 157 ~~~~~n~e-~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~ 235 (489)
T PTZ00021 157 KFLMTNLE-NVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKS 235 (489)
T ss_pred hhhccChH-HHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccc
Confidence 33444433 446899999999999999989999999999999999999975 5799999999999999999998876432
Q ss_pred h-hhhhhh-hccccc-----cccccccCCCCCCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCH
Q 017419 118 D-AKRRLM-KSKVAS-----QRYACKAGDELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSE 190 (372)
Q Consensus 118 ~-~~~~~~-~~~~~~-----~~~~~~~~~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~ 190 (372)
. ...... ...... ..+.+.....+|++||||+.|.|+||||||.||||||||+++++|++++++++..++||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSe 315 (489)
T PTZ00021 236 FDFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSE 315 (489)
T ss_pred cccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCH
Confidence 1 000000 000000 011111111249999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCchhHHHHHHHHhCCCCCCCCCCcCCC-CCccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC
Q 017419 191 QELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGA-ENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD 269 (372)
Q Consensus 191 q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~ 269 (372)
|+|+||+.. +.||+||++..|+.|+.+++|+++|++|||.+. .+.|.... ....+++.+|..++ +++|+++|..
T Consensus 316 QqLVDCs~~-n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~ 390 (489)
T PTZ00021 316 QELVDCSFK-NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRF 390 (489)
T ss_pred HHHhhhccC-CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHh
Confidence 999999864 889999999999999988889999999999987 47886432 23346788888775 3578888875
Q ss_pred -CCeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCC----------eeEEEEEcCCCCCCCCCceEEEEec
Q 017419 270 -QPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENG----------VDYWLVRNSWGSDWGENGYVKLQRN 338 (372)
Q Consensus 270 -gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g----------~~ywivkNSWG~~WGe~GY~~i~r~ 338 (372)
|||+|++++. .+|++|++|||++.|+..++|||+|||||++++ .+|||||||||++|||+|||||+|+
T Consensus 391 ~GPVsv~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~ 469 (489)
T PTZ00021 391 LGPISVSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETD 469 (489)
T ss_pred cCCeEEEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcC
Confidence 9999999996 689999999999889888899999999997532 4799999999999999999999998
Q ss_pred CCCCCCCCcccccccceeeec
Q 017419 339 LLDTNTGKCGIAMEASYPVKN 359 (372)
Q Consensus 339 ~~~~~~~~Cgi~~~~~~p~~~ 359 (372)
.+.. .|+|||++.+.||++.
T Consensus 470 ~~g~-~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 470 ENGL-MKTCSLGTEAYVPLIE 489 (489)
T ss_pred CCCC-CCCCCCcccceeEecC
Confidence 6433 5789999999999863
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=5.6e-75 Score=575.12 Aligned_cols=305 Identities=38% Similarity=0.701 Sum_probs=253.2
Q ss_pred chHHHHHHHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCCCCceEEEcccCCCCCHHHHHHhhcCccchhhhh--
Q 017419 45 DDEVMTIYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLGTRSDAKRR-- 122 (372)
Q Consensus 45 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~-- 122 (372)
+.++..+|++|+++|+|+|.+.+|+.+|+.||++|+++|++||. +.+|++|+|+|+|||+|||.+++++...+....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~ 197 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNST 197 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHHHHHhccCCCccccccc
Confidence 45567789999999999999989999999999999999999997 568999999999999999998876543211000
Q ss_pred -h----hhcccccccccc-------------ccCCCCCCceecCCCCCCCccccCC-CCcchHHHHHHHHHHHHHHHhcC
Q 017419 123 -L----MKSKVASQRYAC-------------KAGDELPESVDWREKGAVNPVKDQG-SCGSCWAFSTVAAVEGINKIVTG 183 (372)
Q Consensus 123 -~----~~~~~~~~~~~~-------------~~~~~lP~~~Dwr~~g~vtpVkdQg-~cGsCwAfA~~~alE~~~~~~~~ 183 (372)
. .........+.. .....+|++||||+.|.|+|||||| .||||||||+++++|++++++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~ 277 (448)
T PTZ00200 198 SHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRD 277 (448)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHhcC
Confidence 0 000000000100 0012369999999999999999999 99999999999999999999999
Q ss_pred CCccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHHhCCCCCCCCCCcCCCCCccCCCCCCCeeEeecceeeCCcccHHHH
Q 017419 184 ELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSL 263 (372)
Q Consensus 184 ~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i 263 (372)
..++||+|+|+||+. .+.||+||++..|+.|+.++ |+++|++|||.+..+.|.... ...+.+.+|..++ ..+.+
T Consensus 278 ~~~~LSeQqLvDC~~-~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~--~~~~~i~~y~~~~--~~~~l 351 (448)
T PTZ00200 278 KSVDLSEQELVNCDT-KSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS--TKKVYIDSYLVAK--GKDVL 351 (448)
T ss_pred CCeecCHHHHhhccC-ccCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC--CCeeEecceEecC--HHHHH
Confidence 999999999999986 37899999999999999665 999999999999999997543 2335578887654 34568
Q ss_pred HHHHhCCCeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeee--eCCeeEEEEEcCCCCCCCCCceEEEEecCCC
Q 017419 264 KKAVADQPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGT--ENGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341 (372)
Q Consensus 264 ~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~--~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~ 341 (372)
++++..|||+|++.+. .+|+.|++|||+++|+..++|||+|||||. ++|.+|||||||||++|||+|||||+|+..
T Consensus 352 ~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~- 429 (448)
T PTZ00200 352 NKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE- 429 (448)
T ss_pred HHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC-
Confidence 8888889999999986 789999999999889877899999999984 467899999999999999999999999742
Q ss_pred CCCCCcccccccceeeec
Q 017419 342 TNTGKCGIAMEASYPVKN 359 (372)
Q Consensus 342 ~~~~~Cgi~~~~~~p~~~ 359 (372)
+.|.|||++.+.||++.
T Consensus 430 -g~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 430 -GTDKCGILTVGLTPVFY 446 (448)
T ss_pred -CCCcCCccccceeeEEe
Confidence 25789999999999974
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-68 Score=512.81 Aligned_cols=288 Identities=47% Similarity=0.869 Sum_probs=247.3
Q ss_pred HHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCC-CCceEEEcccCCCCCHHHHHHhhcCccchhhhhhhhccccccccc
Q 017419 56 LAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSL-NRTYKVGLNKFADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYA 134 (372)
Q Consensus 56 ~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~-~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (372)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.. ..+|++++|+|+|+|.+|++..+.+.+.+.... .....
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~~------~~~~~- 102 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIKR------DKFTE- 102 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccccc------ccccc-
Confidence 7778888877788999999999999999999997 889999999999999999998877655433210 00001
Q ss_pred cccCCCCCCceecCCCC-CCCccccCCCCcchHHHHHHHHHHHHHHHhcC-CCccCCHHHHhhhcCCCCCCCCCCchhHH
Q 017419 135 CKAGDELPESVDWREKG-AVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELVDCDRKINAGCNGGLMDYA 212 (372)
Q Consensus 135 ~~~~~~lP~~~Dwr~~g-~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~-~~~~LS~q~l~dc~~~~~~gC~GG~~~~a 212 (372)
.....++|++||||++| .++||||||.||||||||++++||++++|+++ ..+.||+|+|+||+...+.||+||++..|
T Consensus 103 ~~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A 182 (325)
T KOG1543|consen 103 KLDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNA 182 (325)
T ss_pred ccchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHH
Confidence 12246899999999996 55669999999999999999999999999999 89999999999999866889999999999
Q ss_pred HHHHHHhCCCCCCCCCCcCCCCCccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEEeCcccccccCCceE
Q 017419 213 FQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVF 291 (372)
Q Consensus 213 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy 291 (372)
++|+.+++++..+++|||.+..+.|..... ...+.+.++..++.+ +++|++++.+ |||+|+|.+.. +|++|++|||
T Consensus 183 ~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~-~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~~-~F~~Y~~GVy 259 (325)
T KOG1543|consen 183 FKYIKKNGGVTECENYPYIGKDGTCKSNKK-DKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAYE-DFSLYKGGVY 259 (325)
T ss_pred HHHHHHhCCCCCCcCCCCcCCCCCccCCCc-cceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeehh-hhhhccCceE
Confidence 999999855555999999999999987655 455667788888877 7888888876 89999999985 9999999999
Q ss_pred eCCCCC--CCCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccce-eee
Q 017419 292 TGECGS--ALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASY-PVK 358 (372)
Q Consensus 292 ~~~~~~--~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~-p~~ 358 (372)
.+++.. .++|||+|||||+.++.+|||||||||++|||+|||||.|+. +.|+|++.++| |+.
T Consensus 260 ~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~-----~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 260 AEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGV-----NKCGIASEASYGPIK 324 (325)
T ss_pred eCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCC-----CchhhhcccccCCCC
Confidence 987655 589999999999966789999999999999999999999995 46999999998 653
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=8e-57 Score=417.96 Aligned_cols=208 Identities=35% Similarity=0.721 Sum_probs=176.1
Q ss_pred CCCceecCCCC----CCCccccCCCCcchHHHHHHHHHHHHHHHhcCC------CccCCHHHHhhhcCCCCCCCCCCchh
Q 017419 141 LPESVDWREKG----AVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGE------LISLSEQELVDCDRKINAGCNGGLMD 210 (372)
Q Consensus 141 lP~~~Dwr~~g----~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~------~~~LS~q~l~dc~~~~~~gC~GG~~~ 210 (372)
||++||||+.+ +|+||||||.||+|||||+++++|+++++++++ .+.||+|+|+||.. .+.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~-~~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ-YSQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC-CCCCCCCCCHH
Confidence 79999999998 999999999999999999999999999998876 68899999999986 47899999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcCC-CCCccCCCCCCCeeEeecceeeCC----cccHHHHHHHHhC-CCeEEEEEeCccccc
Q 017419 211 YAFQFIIQNGGMDSEQDYPYLG-AENKCDPSRRNAKVVSIDGYEDVS----PFDEMSLKKAVAD-QPVSVAIEAGGRAFQ 284 (372)
Q Consensus 211 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~~~~~~~~i~~y~~v~----~~~~~~i~~~l~~-gPV~v~~~~~~~~f~ 284 (372)
.++.|+.++ |+++|++|||.. ..+.|.........+.+..|..+. ..++++|+++|.+ |||++++++. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999999766 999999999998 677897543122233344444331 2467788888865 9999999996 7899
Q ss_pred ccCCceEeCC-----CCC---------CCCeEEEEEEeeeeC--CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcc
Q 017419 285 HYESGVFTGE-----CGS---------ALDHGVVAVGYGTEN--GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCG 348 (372)
Q Consensus 285 ~y~~Giy~~~-----~~~---------~~~HaV~iVGyg~~~--g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cg 348 (372)
+|++|||+.. |.. .++|||+|||||++. +.+|||||||||++|||+|||||+|+. |.||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-----~~cg 232 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-----NECG 232 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-----cccC
Confidence 9999999874 532 468999999999876 899999999999999999999999973 5699
Q ss_pred ccccccee
Q 017419 349 IAMEASYP 356 (372)
Q Consensus 349 i~~~~~~p 356 (372)
|++.+.+.
T Consensus 233 i~~~~~~~ 240 (243)
T cd02621 233 IESQAVFA 240 (243)
T ss_pred cccceEee
Confidence 99998654
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.7e-56 Score=414.60 Aligned_cols=211 Identities=29% Similarity=0.634 Sum_probs=179.7
Q ss_pred CCCceecCCCC---CCCccccCC---CCcchHHHHHHHHHHHHHHHhcC---CCccCCHHHHhhhcCCCCCCCCCCchhH
Q 017419 141 LPESVDWREKG---AVNPVKDQG---SCGSCWAFSTVAAVEGINKIVTG---ELISLSEQELVDCDRKINAGCNGGLMDY 211 (372)
Q Consensus 141 lP~~~Dwr~~g---~vtpVkdQg---~cGsCwAfA~~~alE~~~~~~~~---~~~~LS~q~l~dc~~~~~~gC~GG~~~~ 211 (372)
||++||||+.+ +|+|||||| .||||||||++++||+++.++++ ..+.||+|+|+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 69999999987 899999998 89999999999999999998775 357899999999987 78999999999
Q ss_pred HHHHHHHhCCCCCCCCCCcCCCCCccCCCC--------------CCCeeEeecceeeCCcccHHHHHHHHh-CCCeEEEE
Q 017419 212 AFQFIIQNGGMDSEQDYPYLGAENKCDPSR--------------RNAKVVSIDGYEDVSPFDEMSLKKAVA-DQPVSVAI 276 (372)
Q Consensus 212 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~--------------~~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~v~~ 276 (372)
+++|+.++ |+++|++|||......|.+.. .....+.++.|..+. +++.|+++|. +|||+|++
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999776 999999999998777775311 012345667776664 3566777665 59999999
Q ss_pred EeCcccccccCCceEeCC-CCCCCCeEEEEEEeeeeC-CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccc
Q 017419 277 EAGGRAFQHYESGVFTGE-CGSALDHGVVAVGYGTEN-GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEAS 354 (372)
Q Consensus 277 ~~~~~~f~~y~~Giy~~~-~~~~~~HaV~iVGyg~~~-g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~ 354 (372)
.+. ++|+.|++|||+.. |...++|||+|||||+++ +++|||||||||++|||+|||||+|+......++|||++.+.
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 996 58999999999874 455679999999999876 899999999999999999999999997444468899999999
Q ss_pred eee
Q 017419 355 YPV 357 (372)
Q Consensus 355 ~p~ 357 (372)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 875
No 8
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=1e-55 Score=401.32 Aligned_cols=207 Identities=58% Similarity=1.092 Sum_probs=185.3
Q ss_pred CCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHHhCC
Q 017419 142 PESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGG 221 (372)
Q Consensus 142 P~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~G 221 (372)
|++||||+.+.++||+|||.||+|||||+++++|++++++++..++||+|+|++|....+.+|.||+...+++++.+. |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 789999999999999999999999999999999999999999889999999999987447899999999999988554 9
Q ss_pred CCCCCCCCcCCCCCccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEEeCcccccccCCceEeCCCC--CC
Q 017419 222 MDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGECG--SA 298 (372)
Q Consensus 222 i~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~--~~ 298 (372)
+++|++|||......|.... ....+++..|..+...+.+.||++|.+ |||++++.+. ++|+.|++|||..++. ..
T Consensus 80 i~~e~~yPY~~~~~~C~~~~-~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~ 157 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNS-SKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTN 157 (210)
T ss_pred cCccccCCccCCCCCccCCC-CcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCc
Confidence 99999999999888897643 345688889998887667889999877 8999999986 6899999999987543 45
Q ss_pred CCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCccccccccee
Q 017419 299 LDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYP 356 (372)
Q Consensus 299 ~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~p 356 (372)
++|||+|||||++.+.+|||||||||++||++|||||+|+. +.|||++.+.||
T Consensus 158 ~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~~ 210 (210)
T cd02248 158 LNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS-----NLCGIASYASYP 210 (210)
T ss_pred CCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC-----CccCceeeeecC
Confidence 79999999999998999999999999999999999999974 569999988876
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.4e-55 Score=407.69 Aligned_cols=205 Identities=38% Similarity=0.703 Sum_probs=170.6
Q ss_pred CCceecCCC--CC--CCccccCCCCcchHHHHHHHHHHHHHHHhcC--CCccCCHHHHhhhcCCCCCCCCCCchhHHHHH
Q 017419 142 PESVDWREK--GA--VNPVKDQGSCGSCWAFSTVAAVEGINKIVTG--ELISLSEQELVDCDRKINAGCNGGLMDYAFQF 215 (372)
Q Consensus 142 P~~~Dwr~~--g~--vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~--~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~ 215 (372)
|++||||++ ++ |+||+|||.||+|||||++++||+++.++++ +.+.||+|+|+||+...+.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 899999997 45 4599999999999999999999999999887 77899999999998744789999999999999
Q ss_pred HHHhCCCCCCCCCCcCCCCCc------------------cCCCCC---CCeeEeecceeeCCcccHHHHHHHHh-CCCeE
Q 017419 216 IIQNGGMDSEQDYPYLGAENK------------------CDPSRR---NAKVVSIDGYEDVSPFDEMSLKKAVA-DQPVS 273 (372)
Q Consensus 216 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~~---~~~~~~i~~y~~v~~~~~~~i~~~l~-~gPV~ 273 (372)
+.++ |+++|++|||...... |..... ....+.+..+..+.. ++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPS-DETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCC-HHHHHHHHHHHCCCeE
Confidence 9776 9999999999876543 321111 111233444545543 5678888876 59999
Q ss_pred EEEEeCcccccccCCceEeCCCCC-CCCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccc
Q 017419 274 VAIEAGGRAFQHYESGVFTGECGS-ALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAME 352 (372)
Q Consensus 274 v~~~~~~~~f~~y~~Giy~~~~~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~ 352 (372)
|++.+. ++|+.|++|||+..++. .++|||+|||||++++++|||||||||++|||+|||||+|+. |.|||+++
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~-----~~cgi~~~ 232 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS-----NECGIESE 232 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC-----cccccccc
Confidence 999995 79999999999876554 468999999999988999999999999999999999999973 56999998
Q ss_pred cc
Q 017419 353 AS 354 (372)
Q Consensus 353 ~~ 354 (372)
++
T Consensus 233 ~~ 234 (236)
T cd02620 233 VV 234 (236)
T ss_pred ee
Confidence 75
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.6e-54 Score=394.79 Aligned_cols=213 Identities=46% Similarity=0.925 Sum_probs=182.5
Q ss_pred CCCceecCCC-CCCCccccCCCCcchHHHHHHHHHHHHHHHhc-CCCccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHH
Q 017419 141 LPESVDWREK-GAVNPVKDQGSCGSCWAFSTVAAVEGINKIVT-GELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQ 218 (372)
Q Consensus 141 lP~~~Dwr~~-g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~-~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~ 218 (372)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|+.++.+
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 788999999999999744679999999999999988
Q ss_pred hCCCCCCCCCCcCCCC-CccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEEeCcccccccCCceEeCC-C
Q 017419 219 NGGMDSEQDYPYLGAE-NKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGE-C 295 (372)
Q Consensus 219 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~-~ 295 (372)
+.|+++|++|||.... ..|.........+++..|..+...+.+.|+++|.+ |||++++.+..++|..|++|||..+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 4699999999999887 68876533223467888888877778889999987 9999999997546999999999984 5
Q ss_pred C-CCCCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccceee
Q 017419 296 G-SALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPV 357 (372)
Q Consensus 296 ~-~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~p~ 357 (372)
. ..++|||+|||||++.+++|||||||||++||++|||||+|+.+ ++|||+++++|||
T Consensus 161 ~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~----~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN----NECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS----SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC----CcCccCceeeecC
Confidence 5 46799999999999999999999999999999999999999864 3699999999997
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.1e-52 Score=425.94 Aligned_cols=215 Identities=28% Similarity=0.544 Sum_probs=175.2
Q ss_pred CCCCCCceecCCC----CCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCC----------ccCCHHHHhhhcCCCCCC
Q 017419 138 GDELPESVDWREK----GAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGEL----------ISLSEQELVDCDRKINAG 203 (372)
Q Consensus 138 ~~~lP~~~Dwr~~----g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~----------~~LS~q~l~dc~~~~~~g 203 (372)
..+||++||||+. +.++||+|||.||||||||+++++|++++|++++. ..||+|+|+||+. .++|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~-~nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF-YDQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC-CCCC
Confidence 4689999999984 67999999999999999999999999999986431 2799999999987 4899
Q ss_pred CCCCchhHHHHHHHHhCCCCCCCCCCcCCCCCccCCCCCC--------------------------------------Ce
Q 017419 204 CNGGLMDYAFQFIIQNGGMDSEQDYPYLGAENKCDPSRRN--------------------------------------AK 245 (372)
Q Consensus 204 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~--------------------------------------~~ 245 (372)
|+||++..|++|+.+. ||++|++|||++..+.|...... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999766 99999999999888888532110 01
Q ss_pred eEeecceeeCC-------cccHHHHHHHHh-CCCeEEEEEeCcccccccCCceEeC-------CCCC-------------
Q 017419 246 VVSIDGYEDVS-------PFDEMSLKKAVA-DQPVSVAIEAGGRAFQHYESGVFTG-------ECGS------------- 297 (372)
Q Consensus 246 ~~~i~~y~~v~-------~~~~~~i~~~l~-~gPV~v~~~~~~~~f~~y~~Giy~~-------~~~~------------- 297 (372)
.+.++.|..+. ..+++.|+.+|. +|||+|++++. ++|++|++|||+. .|..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 12234454442 235667777665 59999999996 6899999999984 2532
Q ss_pred --CCCeEEEEEEeeee--CCe--eEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccceeeecC
Q 017419 298 --ALDHGVVAVGYGTE--NGV--DYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASYPVKNS 360 (372)
Q Consensus 298 --~~~HaV~iVGyg~~--~g~--~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~p~~~~ 360 (372)
.++|||+|||||.+ +|. +|||||||||++|||+|||||+|+. |.|||++++.|+..+.
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~-----N~CGIEs~a~~~~pd~ 678 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK-----NFSGIESQSLFIEPDF 678 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC-----CccCCccceeEEeeec
Confidence 36899999999975 453 7999999999999999999999984 5799999999988653
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.6e-52 Score=419.24 Aligned_cols=209 Identities=26% Similarity=0.522 Sum_probs=172.3
Q ss_pred CCCCCCceecCCCC---CCCccccCCC---CcchHHHHHHHHHHHHHHHhcC------CCccCCHHHHhhhcCCCCCCCC
Q 017419 138 GDELPESVDWREKG---AVNPVKDQGS---CGSCWAFSTVAAVEGINKIVTG------ELISLSEQELVDCDRKINAGCN 205 (372)
Q Consensus 138 ~~~lP~~~Dwr~~g---~vtpVkdQg~---cGsCwAfA~~~alE~~~~~~~~------~~~~LS~q~l~dc~~~~~~gC~ 205 (372)
..+||++||||+.| +|+||||||. ||||||||+++++|++++++++ ..+.||+|+|+||+. .++||+
T Consensus 202 ~~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~-~n~GCd 280 (548)
T PTZ00364 202 GDPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ-YGQGCA 280 (548)
T ss_pred ccCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC-CCCCCC
Confidence 46799999999987 7899999999 9999999999999999999874 467899999999986 489999
Q ss_pred CCchhHHHHHHHHhCCCCCCCCC--CcCCCCC---ccCCCCCCCeeEe------ecceeeCCcccHHHHHHHHh-CCCeE
Q 017419 206 GGLMDYAFQFIIQNGGMDSEQDY--PYLGAEN---KCDPSRRNAKVVS------IDGYEDVSPFDEMSLKKAVA-DQPVS 273 (372)
Q Consensus 206 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~~------i~~y~~v~~~~~~~i~~~l~-~gPV~ 273 (372)
||++..|++|+.++ |+++|++| ||.+.++ .|..... ...+. +.+|..+. .++++|+.+|. +|||+
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~-~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVs 357 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRP-SRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVP 357 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcc-cceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeE
Confidence 99999999999665 99999999 9987665 4865332 22222 33444343 35666777765 59999
Q ss_pred EEEEeCcccccccCCceEeCC---------C-----------CCCCCeEEEEEEeee-eCCeeEEEEEcCCCC--CCCCC
Q 017419 274 VAIEAGGRAFQHYESGVFTGE---------C-----------GSALDHGVVAVGYGT-ENGVDYWLVRNSWGS--DWGEN 330 (372)
Q Consensus 274 v~~~~~~~~f~~y~~Giy~~~---------~-----------~~~~~HaV~iVGyg~-~~g~~ywivkNSWG~--~WGe~ 330 (372)
|++++. .+|+.|++|||.+. | ...++|||+|||||+ ++|.+|||||||||+ +|||+
T Consensus 358 VaIda~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 358 ASVYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEEEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccC
Confidence 999996 68999999998521 1 134699999999997 468899999999999 99999
Q ss_pred ceEEEEecCCCCCCCCcccccccc--ee
Q 017419 331 GYVKLQRNLLDTNTGKCGIAMEAS--YP 356 (372)
Q Consensus 331 GY~~i~r~~~~~~~~~Cgi~~~~~--~p 356 (372)
|||||+|+. |+|||++.++ +|
T Consensus 437 GYfRI~RG~-----N~CGIes~~v~~~~ 459 (548)
T PTZ00364 437 GTRKIARGV-----NAYNIESEVVVMYW 459 (548)
T ss_pred CeEEEEcCC-----Ccccccceeeeeee
Confidence 999999984 5799999987 55
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.7e-49 Score=350.53 Aligned_cols=167 Identities=62% Similarity=1.191 Sum_probs=148.3
Q ss_pred CCCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHHhC
Q 017419 141 LPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNG 220 (372)
Q Consensus 141 lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~ 220 (372)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|....+.||+||++..|++|+.+++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999874356999999999999998766
Q ss_pred CCCCCCCCCcCCCCCccCCCCCCCeeEeecceeeCCcccHHHHHHHHhCCCeEEEEEeCcccccccCCceEeC-CCCCC-
Q 017419 221 GMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFTG-ECGSA- 298 (372)
Q Consensus 221 Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~~-~~~~~- 298 (372)
|+++|++|||.. ++.+.+. +|++|++|||+. .|...
T Consensus 81 Gi~~e~~~PY~~----------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 81 GLETESCYPYTG----------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CcccccccCccc----------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCc
Confidence 899999999965 4555543 699999999987 47644
Q ss_pred CCeEEEEEEeeee-CCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCccccccc
Q 017419 299 LDHGVVAVGYGTE-NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEA 353 (372)
Q Consensus 299 ~~HaV~iVGyg~~-~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~ 353 (372)
.+|+|+|||||.+ ++++|||||||||++|||+|||||.|+. .+.|||+...
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~----~~~c~i~~~~ 170 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGK----NNECGIEASV 170 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCC----CCccCceeee
Confidence 7999999999987 8899999999999999999999999974 2569996543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=7.1e-46 Score=338.44 Aligned_cols=193 Identities=36% Similarity=0.611 Sum_probs=166.2
Q ss_pred ceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcC--CCccCCHHHHhhhcCCC----CCCCCCCchhHHHH-HH
Q 017419 144 SVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTG--ELISLSEQELVDCDRKI----NAGCNGGLMDYAFQ-FI 216 (372)
Q Consensus 144 ~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~--~~~~LS~q~l~dc~~~~----~~gC~GG~~~~a~~-~~ 216 (372)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.+ ..++||+|+|++|.... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 78999999999998753 36999999999998 65
Q ss_pred HHhCCCCCCCCCCcCCCCCccCCC---CCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEEeCcccccccCCceEe
Q 017419 217 IQNGGMDSEQDYPYLGAENKCDPS---RRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFT 292 (372)
Q Consensus 217 ~~~~Gi~~e~~yPY~~~~~~C~~~---~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~ 292 (372)
+..|+++|++|||......|... ......+++..|..+...++++||++|.+ |||++++.+. +.|..|++|++.
T Consensus 80 -~~~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 -ALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred -HHcCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 45599999999999887776532 23345577888988887778899999987 8999999986 789999999872
Q ss_pred ------CCC-CCCCCeEEEEEEeeeeC--CeeEEEEEcCCCCCCCCCceEEEEecC
Q 017419 293 ------GEC-GSALDHGVVAVGYGTEN--GVDYWLVRNSWGSDWGENGYVKLQRNL 339 (372)
Q Consensus 293 ------~~~-~~~~~HaV~iVGyg~~~--g~~ywivkNSWG~~WGe~GY~~i~r~~ 339 (372)
..+ ...++|||+|||||++. +++|||||||||++||++||+||.++.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 122 34579999999999986 899999999999999999999999974
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=2.2e-44 Score=374.78 Aligned_cols=207 Identities=26% Similarity=0.455 Sum_probs=163.4
Q ss_pred CCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCC-CCCCCCCCchh-HHHHHHHHhCCCCCCCCCCc
Q 017419 153 VNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRK-INAGCNGGLMD-YAFQFIIQNGGMDSEQDYPY 230 (372)
Q Consensus 153 vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~-~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 230 (372)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+.. .+.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999863 46899999755 55588877777999999999
Q ss_pred CC--CCCccCCCCC-----------------CCeeEeecceeeCCcc----c----HHHHHHHHhC-CCeEEEEEeCccc
Q 017419 231 LG--AENKCDPSRR-----------------NAKVVSIDGYEDVSPF----D----EMSLKKAVAD-QPVSVAIEAGGRA 282 (372)
Q Consensus 231 ~~--~~~~C~~~~~-----------------~~~~~~i~~y~~v~~~----~----~~~i~~~l~~-gPV~v~~~~~~~~ 282 (372)
.. ..+.|+.... ....+.+.+|..+... + +++|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567863211 0112334556555432 1 3578888876 9999999984 6
Q ss_pred ccccC-CceEeC-CCCC-CCCeEEEEEEeeee-----CCeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccc
Q 017419 283 FQHYE-SGVFTG-ECGS-ALDHGVVAVGYGTE-----NGVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEAS 354 (372)
Q Consensus 283 f~~y~-~Giy~~-~~~~-~~~HaV~iVGyg~~-----~g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~ 354 (372)
|+.|. +|||.. .|+. ..+|||+|||||.+ ++++|||||||||+.|||+|||||.|+. .+.|||+....
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g----~n~CGin~i~t 777 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG----PSHCEDNFIHS 777 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC----CCCCccchhee
Confidence 88885 898654 5874 57999999999964 2578999999999999999999999953 35699999999
Q ss_pred eeeecCCCCCC
Q 017419 355 YPVKNSQNSAK 365 (372)
Q Consensus 355 ~p~~~~~~~~~ 365 (372)
+|+++--.|..
T Consensus 778 ~~~fn~d~~~~ 788 (1004)
T PTZ00462 778 VVIFNIDLPKN 788 (1004)
T ss_pred eeeEeeccccc
Confidence 99986554444
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=6.9e-44 Score=326.23 Aligned_cols=265 Identities=28% Similarity=0.501 Sum_probs=207.1
Q ss_pred HHHHHhcCCCCceEEE-cccCCCCCHHHHHHhhcCccchhhhhhhhccccccccccccCCCCCCceecCCC--CCCCccc
Q 017419 81 RFIDEHNSLNRTYKVG-LNKFADLTNEEYRAMYLGTRSDAKRRLMKSKVASQRYACKAGDELPESVDWREK--GAVNPVK 157 (372)
Q Consensus 81 ~~I~~~N~~~~s~~~g-~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~--g~vtpVk 157 (372)
++|++.|..+.+|+++ ..+|..||.++-.+..||+.++.... +.. ......++...+||+.||-|++ +++.|+.
T Consensus 151 d~iE~in~G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv-~nM--NEi~~~l~p~~~LPE~F~As~KWp~liH~pl 227 (470)
T KOG1544|consen 151 DMIEAINQGNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSV-MNM--NEIYTVLNPGEVLPEAFEASEKWPNLIHEPL 227 (470)
T ss_pred HHHHHHhcCCccccccchhhhhcccccccceeeecccCchhhh-hhH--HhHhhccCcccccchhhhhhhcCCccccCcc
Confidence 3688899888899986 45999999998877778877654321 111 1111122345799999999997 7899999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHhcCC--CccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHHhCCCCCCCCCCcCCCC-
Q 017419 158 DQGSCGSCWAFSTVAAVEGINKIVTGE--LISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDYPYLGAE- 234 (372)
Q Consensus 158 dQg~cGsCwAfA~~~alE~~~~~~~~~--~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~- 234 (372)
|||+|++.|||+++++...+++|++.. ...||+|+|++|+....+||+||..+.|+-|+.+. |++...||||....
T Consensus 228 DQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ~ 306 (470)
T KOG1544|consen 228 DQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQA 306 (470)
T ss_pred ccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCCC
Confidence 999999999999999998888887653 35799999999998768999999999999999665 99999999997532
Q ss_pred ---CccC------------------CCCCCC-eeEeecceeeCCcccHHHHHHHHhCCCeEEEEEeCcccccccCCceEe
Q 017419 235 ---NKCD------------------PSRRNA-KVVSIDGYEDVSPFDEMSLKKAVADQPVSVAIEAGGRAFQHYESGVFT 292 (372)
Q Consensus 235 ---~~C~------------------~~~~~~-~~~~i~~y~~v~~~~~~~i~~~l~~gPV~v~~~~~~~~f~~y~~Giy~ 292 (372)
+.|. ....+. ..+....=.+++++++++|++++.+|||.+.+.+ .++|.+|++|||.
T Consensus 307 ~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~V-HEDFF~YkgGiY~ 385 (470)
T KOG1544|consen 307 GPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEV-HEDFFLYKGGIYS 385 (470)
T ss_pred CCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhh-hhhhhhhccceee
Confidence 2332 211111 2344443345777888888999999999988877 5899999999998
Q ss_pred CCCC---------CCCCeEEEEEEeeeeC-----CeeEEEEEcCCCCCCCCCceEEEEecCCCCCCCCcccccccce
Q 017419 293 GECG---------SALDHGVVAVGYGTEN-----GVDYWLVRNSWGSDWGENGYVKLQRNLLDTNTGKCGIAMEASY 355 (372)
Q Consensus 293 ~~~~---------~~~~HaV~iVGyg~~~-----g~~ywivkNSWG~~WGe~GY~~i~r~~~~~~~~~Cgi~~~~~~ 355 (372)
+... ..+.|+|.|.|||++. ..+|||..||||+.|||+|||||.|++ |+|-|++..+-
T Consensus 386 H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv-----NecdIEsfvIg 457 (470)
T KOG1544|consen 386 HTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV-----NECDIESFVIG 457 (470)
T ss_pred ccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc-----cchhhhHhhhh
Confidence 7422 2468999999999863 257999999999999999999999995 57999987653
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.8e-30 Score=242.64 Aligned_cols=197 Identities=28% Similarity=0.437 Sum_probs=132.9
Q ss_pred CCCCCceecCCCCCCCccccCCCCcchHHHHHHHHHHHHHHHhcCCCccCCHHHHhhhcCC-CCCC-----CCCCchhHH
Q 017419 139 DELPESVDWREKGAVNPVKDQGSCGSCWAFSTVAAVEGINKIVTGELISLSEQELVDCDRK-INAG-----CNGGLMDYA 212 (372)
Q Consensus 139 ~~lP~~~Dwr~~g~vtpVkdQg~cGsCwAfA~~~alE~~~~~~~~~~~~LS~q~l~dc~~~-~~~g-----C~GG~~~~a 212 (372)
..+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ..++|+..+..-... +..+ .+||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45999999999999999999999999999999999998764322 344555544332111 1222 347888888
Q ss_pred HHHHHHhCCCCCCCCCCcCCCCCccCCCCCCCeeEeecceeeCCc----ccHHHHHHHHhC-CCeE--EEEEeCcccccc
Q 017419 213 FQFIIQNGGMDSEQDYPYLGAENKCDPSRRNAKVVSIDGYEDVSP----FDEMSLKKAVAD-QPVS--VAIEAGGRAFQH 285 (372)
Q Consensus 213 ~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~v~~----~~~~~i~~~l~~-gPV~--v~~~~~~~~f~~ 285 (372)
..|+.+..|.+.|.+-||....-.|.......+. +..-..++. -+.-.+++++.. |-+. +.+++. .+..
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~--~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~ 250 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKH--VQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLG 250 (372)
T ss_pred cccccccCCcchhhcCccccccccCCcCCchhhc--cccceecccchhhhcccchHHHHhhhccccceeEEecc--cccc
Confidence 8888888999999999998776666532211111 111111211 122236666665 6444 334443 2322
Q ss_pred cCCceEeCCCCCCCCeEEEEEEeeee----------CCeeEEEEEcCCCCCCCCCceEEEEecCCC
Q 017419 286 YESGVFTGECGSALDHGVVAVGYGTE----------NGVDYWLVRNSWGSDWGENGYVKLQRNLLD 341 (372)
Q Consensus 286 y~~Giy~~~~~~~~~HaV~iVGyg~~----------~g~~ywivkNSWG~~WGe~GY~~i~r~~~~ 341 (372)
..-+.+........+|||+||||||. +|.++||||||||++||++|||||++...+
T Consensus 251 ~~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~ 316 (372)
T COG4870 251 ICIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYAL 316 (372)
T ss_pred cccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeecc
Confidence 22333433333567999999999985 367899999999999999999999997643
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.89 E-value=6.6e-23 Score=202.58 Aligned_cols=179 Identities=26% Similarity=0.423 Sum_probs=126.1
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHh-cCCCccCCHHHHhhhcC-----------------C----------CCCCCC
Q 017419 154 NPVKDQGSCGSCWAFSTVAAVEGINKIV-TGELISLSEQELVDCDR-----------------K----------INAGCN 205 (372)
Q Consensus 154 tpVkdQg~cGsCwAfA~~~alE~~~~~~-~~~~~~LS~q~l~dc~~-----------------~----------~~~gC~ 205 (372)
.||+||+..|.||.||+...+++.+.++ +.+.+.||+.++...+. + .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999977664 45679999998865211 0 134678
Q ss_pred CCchhHHHHHHHHhCCCCCCCCCCcCCC--C-------------------------C----------------------c
Q 017419 206 GGLMDYAFQFIIQNGGMDSEQDYPYLGA--E-------------------------N----------------------K 236 (372)
Q Consensus 206 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~--~-------------------------~----------------------~ 236 (372)
||....+...+.+ +|+++++.||-+.. . + .
T Consensus 135 GGqw~m~~~li~K-YGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEK-YGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHH-cCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998855 59999999984210 0 0 0
Q ss_pred cC--CCC-------------------------------------------C----CCeeEee-----------cceeeCC
Q 017419 237 CD--PSR-------------------------------------------R----NAKVVSI-----------DGYEDVS 256 (372)
Q Consensus 237 C~--~~~-------------------------------------------~----~~~~~~i-----------~~y~~v~ 256 (372)
|- ++. + -.+.+.+ ..|.+++
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 00 000 0 0000111 0122332
Q ss_pred cccHHHHH----HHHhC-CCeEEEEEeCcccccccCCceEeCC----------------------CCCCCCeEEEEEEee
Q 017419 257 PFDEMSLK----KAVAD-QPVSVAIEAGGRAFQHYESGVFTGE----------------------CGSALDHGVVAVGYG 309 (372)
Q Consensus 257 ~~~~~~i~----~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~----------------------~~~~~~HaV~iVGyg 309 (372)
.+.++ ++|.. +||.+++++. .|..|++||++.. +.+..+|||+|||||
T Consensus 294 ---~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~ 368 (437)
T cd00585 294 ---MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVD 368 (437)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEE
Confidence 33344 45666 5999999996 5779999999643 233468999999999
Q ss_pred eeC-Ce-eEEEEEcCCCCCCCCCceEEEEec
Q 017419 310 TEN-GV-DYWLVRNSWGSDWGENGYVKLQRN 338 (372)
Q Consensus 310 ~~~-g~-~ywivkNSWG~~WGe~GY~~i~r~ 338 (372)
.+. |+ .||+||||||+.||++||++|+++
T Consensus 369 ~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 369 LDEDGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred ecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence 754 65 699999999999999999999975
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.68 E-value=9.7e-17 Score=115.56 Aligned_cols=57 Identities=47% Similarity=0.825 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhc-CCCCceEEEcccCCCCCHHHH
Q 017419 52 YQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHN-SLNRTYKVGLNKFADLTNEEY 108 (372)
Q Consensus 52 f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N-~~~~s~~~g~N~FsD~t~eEf 108 (372)
|++|+++|+|+|.+.+|+.+|+.+|.+|++.|++|| ....+|++|+|+|+|||.+||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999999 678899999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.68 E-value=7.8e-16 Score=152.55 Aligned_cols=182 Identities=24% Similarity=0.422 Sum_probs=106.2
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcC-CCccCCHHHHhh----------------hcCC-----------CCCCCC
Q 017419 154 NPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELVD----------------CDRK-----------INAGCN 205 (372)
Q Consensus 154 tpVkdQg~cGsCwAfA~~~alE~~~~~~~~-~~~~LS~q~l~d----------------c~~~-----------~~~gC~ 205 (372)
.||.||...|.||.||+...++..+.++.+ +.+.||+.+|.. +... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999998877765 679999998752 2110 023578
Q ss_pred CCchhHHHHHHHHhCCCCCCCCCCcCCC------------------------------C---------------------
Q 017419 206 GGLMDYAFQFIIQNGGMDSEQDYPYLGA------------------------------E--------------------- 234 (372)
Q Consensus 206 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~------------------------------~--------------------- 234 (372)
||....+...+.+. |+|+.+.||-+.. .
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888555 9999999984310 0
Q ss_pred --CccCCC------CCC---------------------------------------CeeEeec-----------ceeeCC
Q 017419 235 --NKCDPS------RRN---------------------------------------AKVVSID-----------GYEDVS 256 (372)
Q Consensus 235 --~~C~~~------~~~---------------------------------------~~~~~i~-----------~y~~v~ 256 (372)
|.++.. ... .+.+.+. .|.+++
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000000 000 0011111 122222
Q ss_pred ccc-HHHHHHHHhCC-CeEEEEEeCcccccccCCceEeCCC----------------------CCCCCeEEEEEEeee-e
Q 017419 257 PFD-EMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGEC----------------------GSALDHGVVAVGYGT-E 311 (372)
Q Consensus 257 ~~~-~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~----------------------~~~~~HaV~iVGyg~-~ 311 (372)
... .+.+..+|..| ||..+.++. . +...+.||.+... .+..+|||+|||.+- +
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 111 12334456777 999999996 3 4566888876431 123589999999996 4
Q ss_pred CCe-eEEEEEcCCCCCCCCCceEEEEec
Q 017419 312 NGV-DYWLVRNSWGSDWGENGYVKLQRN 338 (372)
Q Consensus 312 ~g~-~ywivkNSWG~~WGe~GY~~i~r~ 338 (372)
+|+ .+|+|+||||++.|.+|||.|+..
T Consensus 373 ~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 565 699999999999999999999853
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.50 E-value=2.3e-14 Score=102.65 Aligned_cols=56 Identities=52% Similarity=0.937 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCcCChhhHHHHHHHHHHHHHHHHHhcCCC-CceEEEcccCCCCCHHH
Q 017419 52 YQTWLAKHGKTSNGMGHNEKRFQIFKDNLRFIDEHNSLN-RTYKVGLNKFADLTNEE 107 (372)
Q Consensus 52 f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~-~s~~~g~N~FsD~t~eE 107 (372)
|++|+++|+|.|.+.+|...|+.+|.+|++.|+.||... .+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999753 78999999999999876
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.81 E-value=2.6e-08 Score=93.44 Aligned_cols=75 Identities=29% Similarity=0.540 Sum_probs=53.8
Q ss_pred HHHHHHH----HhCC-CeEEEEEeCcccccccCCceEeCC-------CC---------------CCCCeEEEEEEeeee-
Q 017419 260 EMSLKKA----VADQ-PVSVAIEAGGRAFQHYESGVFTGE-------CG---------------SALDHGVVAVGYGTE- 311 (372)
Q Consensus 260 ~~~i~~~----l~~g-PV~v~~~~~~~~f~~y~~Giy~~~-------~~---------------~~~~HaV~iVGyg~~- 311 (372)
.+.++++ ++.| +|-.+.++. .+..-+.||.+.. -+ +-..|||+|.|.+.+
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 3445543 3456 999998885 4677777875421 00 123799999999954
Q ss_pred CC-eeEEEEEcCCCCCCCCCceEEEE
Q 017419 312 NG-VDYWLVRNSWGSDWGENGYVKLQ 336 (372)
Q Consensus 312 ~g-~~ywivkNSWG~~WGe~GY~~i~ 336 (372)
+| .--|.|.||||.+=|.+|||-++
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCCceeeEeecccccccCCCceEeeh
Confidence 33 34699999999999999999886
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.35 E-value=0.00012 Score=68.98 Aligned_cols=75 Identities=23% Similarity=0.319 Sum_probs=52.8
Q ss_pred CccccCCCCcchHHHHHHHHHHHHHHHhcC-CCccCCHHHHhhhcC-------------------C----------CCCC
Q 017419 154 NPVKDQGSCGSCWAFSTVAAVEGINKIVTG-ELISLSEQELVDCDR-------------------K----------INAG 203 (372)
Q Consensus 154 tpVkdQg~cGsCwAfA~~~alE~~~~~~~~-~~~~LS~q~l~dc~~-------------------~----------~~~g 203 (372)
+||.||.+.|-||.|+.+..+---..++-+ ..+.||..+|+..+. + .+.-
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999887433333322 357789888753211 0 1234
Q ss_pred CCCCchhHHHHHHHHhCCCCCCCCCC
Q 017419 204 CNGGLMDYAFQFIIQNGGMDSEQDYP 229 (372)
Q Consensus 204 C~GG~~~~a~~~~~~~~Gi~~e~~yP 229 (372)
-+||....-+..+.+ +|+.+.+|||
T Consensus 143 ~DGGqw~MfvNlVkK-YGviPKkcy~ 167 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKK-YGVIPKKCYL 167 (457)
T ss_pred CCCchHHHHHHHHHH-hCCCcHHhcc
Confidence 578888877777754 5999999997
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.12 E-value=0.0065 Score=50.42 Aligned_cols=56 Identities=27% Similarity=0.506 Sum_probs=32.9
Q ss_pred cHHHHHHHHhCC-CeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCCeeEEEEEcCC
Q 017419 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSW 323 (372)
Q Consensus 259 ~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW 323 (372)
+.+.+++.|.+| ||++.+....... .+..+. ....+|.|+|+||+++. +++|..+|
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 456788899887 9999987421111 111111 13469999999999853 78888877
No 25
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.12 E-value=0.0042 Score=40.98 Aligned_cols=35 Identities=40% Similarity=0.505 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCceEEEcccCCCCCHHHHHHhhcCcc
Q 017419 80 LRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMYLGTR 116 (372)
Q Consensus 80 ~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~~~~~ 116 (372)
-++|+..|+.+.+|++|.| |.+.+.++++.+ +|..
T Consensus 3 de~I~~IN~~~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSKNTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHCT-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcCCCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3578888888889999999 899999988765 4654
No 26
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.11 E-value=0.074 Score=46.32 Aligned_cols=119 Identities=17% Similarity=0.288 Sum_probs=65.8
Q ss_pred ccCCCCcchHHHHHHHHHHHHHH--------HhcCCCccCCHHHHhhhcCCCCCCCCCCchhHHHHHHHHhCCCCCCCCC
Q 017419 157 KDQGSCGSCWAFSTVAAVEGINK--------IVTGELISLSEQELVDCDRKINAGCNGGLMDYAFQFIIQNGGMDSEQDY 228 (372)
Q Consensus 157 kdQg~cGsCwAfA~~~alE~~~~--------~~~~~~~~LS~q~l~dc~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~y 228 (372)
..||.-+-|-+||.++.|-+... +.+.-.+.+|+++|.++.. .+...++|.... |....
T Consensus 17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~~--- 83 (175)
T PF05543_consen 17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNPQ--- 83 (175)
T ss_dssp ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEEE---
T ss_pred eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccchh---
Confidence 35899999999999998865421 1112245677888777653 245667776443 32210
Q ss_pred CcCCCCCccCCCCCCCeeEeecceeeCCcccHHHHHHHHhC-CCeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEE
Q 017419 229 PYLGAENKCDPSRRNAKVVSIDGYEDVSPFDEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVG 307 (372)
Q Consensus 229 PY~~~~~~C~~~~~~~~~~~i~~y~~v~~~~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVG 307 (372)
. ....+ +.+.+++.+.+ .|+.+....... ..+...+|||+|||
T Consensus 84 --------------------~--~n~~~--s~~eV~~~~~~nk~i~i~~~~v~~------------~~~~~~gHAlavvG 127 (175)
T PF05543_consen 84 --------------------Y--NNRMP--SFDEVKKLIDNNKGIAILADRVEQ------------TNGPHAGHALAVVG 127 (175)
T ss_dssp --------------------E--ECS-----HHHHHHHHHTT-EEEEEEEETTS------------CTTB--EEEEEEEE
T ss_pred --------------------H--hcCCC--CHHHHHHHHHcCCCeEEEeccccc------------CCCCccceeEEEEe
Confidence 0 01112 23456777766 588776665421 12345699999999
Q ss_pred eee-eCCeeEEEEEcCCC
Q 017419 308 YGT-ENGVDYWLVRNSWG 324 (372)
Q Consensus 308 yg~-~~g~~ywivkNSWG 324 (372)
|-. ++|.++.++=|=|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 987 45688999988884
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=87.82 E-value=1.1 Score=42.82 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=35.7
Q ss_pred HHHHHHHHhCC-CeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCCeeEEEE
Q 017419 260 EMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLV 319 (372)
Q Consensus 260 ~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywiv 319 (372)
.+.+++.|.+| ||.+.++.. +..|...-| .....+|.|+|+||++++ ..+.++
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~~-~~~~v~ 131 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEEE-DVFYVS 131 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCCC-CEEEEE
Confidence 45678888887 999998775 444443322 122358999999999763 345555
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.41 E-value=3.1 Score=36.50 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=35.3
Q ss_pred eCCcccHHHHHHHHhCC-CeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCCeeEEEEEcCCC
Q 017419 254 DVSPFDEMSLKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSWG 324 (372)
Q Consensus 254 ~v~~~~~~~i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG 324 (372)
.+...+...|+..|.+| ||.+-... |.. ..-|+|+|+|||+. ++..-++||
T Consensus 117 d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~----n~yynDpyG 168 (195)
T COG4990 117 DLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY----NIYYNDPYG 168 (195)
T ss_pred cCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc----ceEeccccc
Confidence 34556778899988885 88765543 322 23799999999974 456666774
No 29
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=73.57 E-value=10 Score=31.19 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHhCC-CeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCCeeEEEEEcCC
Q 017419 263 LKKAVADQ-PVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSW 323 (372)
Q Consensus 263 i~~~l~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW 323 (372)
+++.+..| ||.+.+... + .....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~---~-----------~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG---V-----------SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC---c-----------ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66777775 998877541 0 1223589999999982 1235667765
No 30
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=71.90 E-value=17 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.9
Q ss_pred CCeEEEEEEeeeeC--CeeEEEEEcCCCC
Q 017419 299 LDHGVVAVGYGTEN--GVDYWLVRNSWGS 325 (372)
Q Consensus 299 ~~HaV~iVGyg~~~--g~~ywivkNSWG~ 325 (372)
.+||-.|++...-+ +.+...+||-||.
T Consensus 235 ~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEEccCceEEEEecCCccC
Confidence 48999999998766 8899999999994
No 31
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=68.98 E-value=19 Score=32.62 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=33.2
Q ss_pred cHHHHHHHHhCC-CeEEEEEeCcccccc---cCCceEeC---C----CCCCCCeEEEEEEeeeeCCeeEEEEEc
Q 017419 259 DEMSLKKAVADQ-PVSVAIEAGGRAFQH---YESGVFTG---E----CGSALDHGVVAVGYGTENGVDYWLVRN 321 (372)
Q Consensus 259 ~~~~i~~~l~~g-PV~v~~~~~~~~f~~---y~~Giy~~---~----~~~~~~HaV~iVGyg~~~g~~ywivkN 321 (372)
..+.|.+.|..| |+++-++.. ... -+...... . .....+|-|+|+||+.+.+ -++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~--~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATK--EFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCCCC--eEEEeC
Confidence 456677778774 666666553 222 12222211 1 1234699999999997643 355555
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.85 E-value=9.5 Score=30.02 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=10.1
Q ss_pred CchhHHHHHH-HHHHHHHHHHhhcC
Q 017419 1 MATASMFLAI-STLVFLFFISSSSA 24 (372)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~ 24 (372)
|| .|.+++| |+|++++||++..+
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence 66 4443333 34444455544433
No 33
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=58.78 E-value=1.2e+02 Score=26.23 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=26.6
Q ss_pred cHHHHHHHHhC-CCeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeee
Q 017419 259 DEMSLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTE 311 (372)
Q Consensus 259 ~~~~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~ 311 (372)
..+.+..+|.+ ||+-++.....+ .-..|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P~~---------------~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAPGD---------------SWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCC---------------cceeeEEEEEeecCC
Confidence 34567888876 999988665322 223799999998754
No 34
>PF15240 Pro-rich: Proline-rich
Probab=50.87 E-value=9 Score=33.67 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 017419 6 MFLAISTLVFLFFISSSSAAD 26 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (372)
|+++||+.+||+| +||+.
T Consensus 1 MLlVLLSvALLAL---SSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLAL---SSAQS 18 (179)
T ss_pred ChhHHHHHHHHHh---hhccc
Confidence 7777776666654 44544
No 35
>PF09590 Env-gp36: Lentivirus surface glycoprotein; InterPro: IPR018582 The proteins in this family are envelope glycoproteins from feline immunodeficiency retrovirus. The process of lentiviral envelope glycoprotein-mediated fusion of membranes is essential for viral entry and syncytia formation [].
Probab=47.76 E-value=12 Score=38.12 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC-------------ccCccccCCCCCCCCCCCCchHHHHHHHHHHHHhCCCcCChh---
Q 017419 4 ASMFLAISTLVFLFFISSSSAA-------------DMSIISYDNNHDHSSSWRTDDEVMTIYQTWLAKHGKTSNGMG--- 67 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~Y~~~~--- 67 (372)
..|+|++|||++.+.+..+.|+ ++++|.||=.+ ++..+-++|-.|+..++=+|+..-
T Consensus 150 ~~~~y~~L~i~i~i~~~~~~A~~v~~~PP~ViPv~~~E~I~~~C~~-------pE~p~~ed~~~~~~~~~~~~n~~i~E~ 222 (591)
T PF09590_consen 150 TVSLYLGLFIGIGIWIGTAQAQVVWRLPPWVIPVEETEIINFQCWG-------PECPACEDFLGWMTHFKWSFNTPINET 222 (591)
T ss_pred HHHHHHHHHHHHHHHhcccceEEEEecCCeeEeccccceEEEEeec-------CCCchhHHHhhhcceeeeEEecccccC
Confidence 5688899999999998887776 77888898865 466678899999999999987532
Q ss_pred ------hHHHHHHHHHHHHHH
Q 017419 68 ------HNEKRFQIFKDNLRF 82 (372)
Q Consensus 68 ------E~~~R~~iF~~n~~~ 82 (372)
+.+.|-..|++=++.
T Consensus 223 ~tL~~~a~EI~~~l~~~~~~q 243 (591)
T PF09590_consen 223 PTLGNWAREIWATLFKKATRQ 243 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443
No 36
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=81 Score=23.25 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCcCChhhHHHHHHHHHHHHHH
Q 017419 51 IYQTWLAKHGKTSNGMGHNEKRFQIFKDNLRF 82 (372)
Q Consensus 51 ~f~~f~~~~~k~Y~~~~E~~~R~~iF~~n~~~ 82 (372)
-|++|...+++.-..+ |..+|..-|.+-++.
T Consensus 30 ~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 30 IFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred HHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 5999999999988664 777888777666543
No 37
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=40.50 E-value=68 Score=22.86 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=23.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCCcc--CccccCCCCCCCC
Q 017419 1 MATASMFLAISTLVFLFFISSSSAADM--SIISYDNNHDHSS 40 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 40 (372)
||.--..+++|-++|++ +.++.+|+- ....||..-++++
T Consensus 1 MA~Kl~vialLC~aLva-~vQ~APQYa~GeeP~YDEdd~dde 41 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA-IVQSAPQYAPGEEPSYDEDDDDDE 41 (65)
T ss_pred CcchhhHHHHHHHHHHH-HHhcCcccCCCCCCCcCcccCccc
Confidence 56555556666666665 556666643 3466998765443
No 38
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=39.93 E-value=1.4e+02 Score=26.45 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=27.8
Q ss_pred HHHHHHhC-CCeEEEEEeCcccccccCCceEeCCCCCCCCeEEEEEEeeeeCCeeEEEEEcCCCCCCCCCceEE
Q 017419 262 SLKKAVAD-QPVSVAIEAGGRAFQHYESGVFTGECGSALDHGVVAVGYGTENGVDYWLVRNSWGSDWGENGYVK 334 (372)
Q Consensus 262 ~i~~~l~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~GY~~ 334 (372)
.|+..|.+ .||.+...... .+||.+|=||..+ +||-+==.||-. .+|||+
T Consensus 142 ~i~~el~~~rPV~~~g~~~~------------------~GHawViDGy~~~---~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 142 MIRNELDNGRPVLYSGNSKS------------------GGHAWVIDGYDSD---GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHTT--EEEEEEETT------------------EEEEEEEEEEESS---SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHcCCCEEEEEecCC------------------CCeEEEEcCccCC---CeEEEeeCccCC--CCCccC
Confidence 45556655 59976643320 1999999999643 466553233322 568885
No 39
>PF11567 PfUIS3: Plasmodium falciparum UIS3 membrane protein; InterPro: IPR021626 UIS3 is a membrane protein essential for sporozoite development in infected hepatocytes. This family is 130-229 of the Plasmodium falciparum UIS3 protein which is compact and has an all alpha-helical structure.PfUIS3(130-229) interacts with lipids, phospholipid lysosomes, the human liver fatty acid-binding protein and with the lipid phosphatidylethanolamine. The interaction with liver fatty acid-binding protein provides the parasite with a method to import essential fatty acids/lipids during rapid growth phases of sporozoites []. ; PDB: 2VWA_C.
Probab=39.19 E-value=20 Score=27.51 Aligned_cols=30 Identities=43% Similarity=0.712 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCceEEEcccCCCCCHHHH
Q 017419 67 GHNEKRFQIFKDNLRFIDEHNSLNRTYKVGLNKFADLTNEEY 108 (372)
Q Consensus 67 ~E~~~R~~iF~~n~~~I~~~N~~~~s~~~g~N~FsD~t~eEf 108 (372)
+--.+|+.+|.+|.+.-.+| +|++++.+.-
T Consensus 18 DvpiKrfN~F~Dn~rla~qh------------HF~~LSn~Qq 47 (101)
T PF11567_consen 18 DVPIKRFNIFMDNARLAAQH------------HFSNLSNEQQ 47 (101)
T ss_dssp ---HHHHHHHHHHHHHHHHH------------HHHHS-HHHH
T ss_pred cccHHHHHHHHHHHHHHHHH------------HHHhcCcHHH
Confidence 34678999999999987777 5888887653
No 40
>PHA02291 hypothetical protein
Probab=32.82 E-value=41 Score=26.86 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccCccccCCCCCCCC
Q 017419 4 ASMFLAISTLVFLFFISSSSAADMSIISYDNNHDHSS 40 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (372)
++.|++||+++|++-|++- +...+.|-.+|-..+
T Consensus 5 ~~iFYiL~~~VL~~si~sY---~~sS~~Y~~~A~~~~ 38 (132)
T PHA02291 5 ASIFYILVVIVLAFSISSY---YISSFMYHDKAKNEV 38 (132)
T ss_pred hhhHHHHHHHHHHHHHHHH---hhheeeeeccccccc
Confidence 5678888888777655543 444455655554333
No 41
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=32.77 E-value=57 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 017419 6 MFLAISTLVFLFFISSSSAAD 26 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (372)
..+.|.+|.|+++++++|+..
T Consensus 30 ILivLVIIiLlImlfqsSS~~ 50 (85)
T PF10717_consen 30 ILIVLVIIILLIMLFQSSSNG 50 (85)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 344556677777778877765
No 42
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.54 E-value=46 Score=19.55 Aligned_cols=12 Identities=0% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 017419 7 FLAISTLVFLFF 18 (372)
Q Consensus 7 ~~~~~~~~~~~~ 18 (372)
++.+|||+|++.
T Consensus 10 livVLFILLIIi 21 (26)
T TIGR01732 10 LIVVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHHHh
Confidence 345555555543
No 43
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=31.12 E-value=48 Score=19.07 Aligned_cols=11 Identities=0% Similarity=0.428 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 017419 7 FLAISTLVFLF 17 (372)
Q Consensus 7 ~~~~~~~~~~~ 17 (372)
++.+|||+|++
T Consensus 8 livVLFILLiI 18 (24)
T PF09680_consen 8 LIVVLFILLII 18 (24)
T ss_pred hHHHHHHHHHH
Confidence 34455555544
No 44
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=29.67 E-value=65 Score=22.55 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCc
Q 017419 4 ASMFLAISTLVFLFFISSSSAAD 26 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (372)
++..+++|||+|.+++..+.++.
T Consensus 13 ~~~~lLiliis~~f~lI~~l~qq 35 (61)
T PF06692_consen 13 YSGPLLILIISFVFFLITSLGQQ 35 (61)
T ss_pred chhHHHHHHHHHHHHHHhhhccC
Confidence 45566777777776665555543
No 45
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=27.80 E-value=1.6e+02 Score=22.24 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=36.4
Q ss_pred cCccccCCCCCCCCCCCCchHHHHHHHHHHHHhCCCc----CChhhHHHHHHHHHHHHHHHHHhcC
Q 017419 27 MSIISYDNNHDHSSSWRTDDEVMTIYQTWLAKHGKTS----NGMGHNEKRFQIFKDNLRFIDEHNS 88 (372)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~Y----~~~~E~~~R~~iF~~n~~~I~~~N~ 88 (372)
|+...||-+.+.+-++.+..++ .+.|++.|.... .+.+|..+|..||..-.+.-+..|.
T Consensus 1 Mp~PLy~~ddp~rCSGnSvsEV---L~~~k~N~D~~~aL~~ETKaEr~~R~~I~LA~k~Ek~r~~~ 63 (97)
T PF11043_consen 1 MPAPLYGADDPRRCSGNSVSEV---LDNIKNNYDAFMALPPETKAERMYRRDIQLAEKQEKERINQ 63 (97)
T ss_pred CCCCccCCCCcccccCccHHHH---HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777775443 344444443322 3567888999999776666555554
No 46
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=26.51 E-value=40 Score=30.05 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHh--hcCCccCccccC
Q 017419 6 MFLAISTLVFLFFISS--SSAADMSIISYD 33 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 33 (372)
||+++++|+|++++.. .+.+.....-|.
T Consensus 1 MKll~~lilli~~~~~~~~~~~yvn~~py~ 30 (212)
T PF11912_consen 1 MKLLISLILLILLIINFSSSSQYVNFQPYQ 30 (212)
T ss_pred CcHHHHHHHHHHHHHhhhcCCcEEEEEEec
Confidence 7775544444444433 444555554454
No 47
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=26.48 E-value=1.2e+02 Score=29.32 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCeEEEEEEeeeeCCee--EEEEEcCCCC
Q 017419 299 LDHGVVAVGYGTENGVD--YWLVRNSWGS 325 (372)
Q Consensus 299 ~~HaV~iVGyg~~~g~~--ywivkNSWG~ 325 (372)
.+||=.|++...-++.+ -..+||-||.
T Consensus 227 ~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 227 KGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred cCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 48999999988655545 8999999983
No 48
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=26.00 E-value=1.1e+02 Score=27.85 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCccccCCCCCCCCCCCCchHHHHHHHHHHHHhCCC
Q 017419 6 MFLAISTLVFLFFISSSSAADMSIISYDNNHDHSSSWRTDDEVMTIYQTWLAKHGKT 62 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~ 62 (372)
|+.++++ +++++|..++++.-.++.|+-- -+...+.+.=+.|.++-++.
T Consensus 1 Mk~~~~i-~~~~~La~s~~~~adinlYGpG-------GPhtaL~~vA~~~~ektg~k 49 (252)
T COG4588 1 MKKAVLI-LLIFLLAFSSAANADINLYGPG-------GPHTALKDVAKKYEEKTGIK 49 (252)
T ss_pred CchhHHH-HHHHHHHhhhhhcceEEEecCC-------CCcHHHHHHHHHHHHHhCeE
Confidence 6666654 4444555555555556678873 34456777778888877774
No 49
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=25.65 E-value=63 Score=25.64 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 017419 4 ASMFLAISTLVFLFFISS 21 (372)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (372)
..|.+.||+|.+++|++.
T Consensus 17 vEMLiVLlIISiLlLl~i 34 (107)
T COG4537 17 VEMLIVLLIISILLLLFI 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 468888998888888775
No 50
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=25.58 E-value=41 Score=33.71 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 017419 71 KRFQIFKDNLRFI 83 (372)
Q Consensus 71 ~R~~iF~~n~~~I 83 (372)
+|++.-..|++.|
T Consensus 9 kRLE~a~~RLE~I 21 (480)
T KOG2675|consen 9 KRLESATSRLEGI 21 (480)
T ss_pred HHHHHHHHHhhhh
Confidence 4445555555444
No 51
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=25.16 E-value=99 Score=20.30 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 017419 3 TASMFLAISTLVFLFFIS 20 (372)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (372)
++.|-++||++.|++|+.
T Consensus 13 ~~~lQL~LL~FlL~fFLV 30 (44)
T PF08135_consen 13 TFALQLLLLVFLLFFFLV 30 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777664
No 52
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=25.00 E-value=78 Score=21.87 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=16.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhhcCC
Q 017419 1 MATASMFLAISTLVFLFFISSSSAA 25 (372)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (372)
||.--++.++++|.|.+|+.++...
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~~~ 25 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTNVD 25 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhcccC
Confidence 6666677777777776666665554
No 53
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.69 E-value=4.3e+02 Score=22.33 Aligned_cols=96 Identities=15% Similarity=0.242 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhcCCccCccc-cCCCCCCCCCCCCchHHHHHHHH----HH----HHhCCCcCChhhHHHHHHHHH
Q 017419 7 FLAISTLVFLFFISSSSAADMSIIS-YDNNHDHSSSWRTDDEVMTIYQT----WL----AKHGKTSNGMGHNEKRFQIFK 77 (372)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~----f~----~~~~k~Y~~~~E~~~R~~iF~ 77 (372)
.+++..++|++||.. .. ...-+ ++..+...|.+..++=-..+|+. +. ...+..-.+.+....|-.+|.
T Consensus 11 Li~vIglAL~aFIv~--d~-~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~ 87 (145)
T PF13623_consen 11 LIIVIGLALFAFIVG--DF-RSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWN 87 (145)
T ss_pred HHHHHHHHHHHHHHH--HH-hccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Confidence 344455566666652 21 22112 34444444555554322233333 33 333443333333577888998
Q ss_pred HHHHHHHHhcCCCCceEEEcccCCCCCHHHHHHhh
Q 017419 78 DNLRFIDEHNSLNRTYKVGLNKFADLTNEEYRAMY 112 (372)
Q Consensus 78 ~n~~~I~~~N~~~~s~~~g~N~FsD~t~eEf~~~~ 112 (372)
+-++.+--... -=++|+. .|++|+..++
T Consensus 88 ~~V~~~ll~~e---~eklGi~----Vs~~El~d~l 115 (145)
T PF13623_consen 88 QMVQNILLEQE---FEKLGIT----VSDDELQDML 115 (145)
T ss_pred HHHHHHHHHHH---HHHhCCc----cCHHHHHHHH
Confidence 87754322111 1245665 6889998765
No 54
>PRK14762 membrane protein; Provisional
Probab=24.33 E-value=46 Score=19.31 Aligned_cols=9 Identities=0% Similarity=0.213 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 017419 12 TLVFLFFIS 20 (372)
Q Consensus 12 ~~~~~~~~~ 20 (372)
+|.|+.+++
T Consensus 10 iifligllv 18 (27)
T PRK14762 10 IIFLIGLLV 18 (27)
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.05 E-value=55 Score=22.11 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 017419 6 MFLAISTLVFLFFISSSSAAD 26 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (372)
|+-+||.|.++.+|+++.-+.
T Consensus 3 lKKsllLlfflG~ISlSlCee 23 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEE 23 (46)
T ss_pred chHHHHHHHHHHHcccchHHH
Confidence 666777777777777776654
No 56
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=21.87 E-value=93 Score=26.71 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHhCCCc
Q 017419 46 DEVMTIYQTWLAKHGKTS 63 (372)
Q Consensus 46 ~~~~~~f~~f~~~~~k~Y 63 (372)
.....+|++|+......-
T Consensus 22 ~~a~~~fe~wr~~~~~~~ 39 (156)
T PF10107_consen 22 RRARELFEQWRQRESETL 39 (156)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 456788999988655433
No 57
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=21.76 E-value=83 Score=28.41 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 017419 6 MFLAISTLVFLFFISSSSA 24 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (372)
|+++++++.+++|..|++.
T Consensus 1 ~k~l~~~~~~~lL~~Cs~~ 19 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCSSE 19 (204)
T ss_pred CcCHHHHHHHHHHHHhCCC
Confidence 4455555555556666644
No 58
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=21.52 E-value=1.4e+02 Score=19.03 Aligned_cols=17 Identities=0% Similarity=0.182 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 017419 5 SMFLAISTLVFLFFISS 21 (372)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (372)
+...+++||+|+.++..
T Consensus 20 ~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 20 ALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455667777766654
No 59
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=20.42 E-value=55 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.071 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCccCccccCCC
Q 017419 6 MFLAISTLVFLFFISSSSAADMSIISYDNN 35 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (372)
|+..+++++|+++++.+.++..+.|+|.+.
T Consensus 3 ~~~~~~~l~l~la~~~s~~~~~~~ia~vn~ 32 (170)
T COG2825 3 KRLLAALLGLALATSASAAQAAPKIAIVNL 32 (170)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcceeeecH
Confidence 555566666666666665555555676653
No 60
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=20.28 E-value=72 Score=28.78 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCc
Q 017419 6 MFLAISTLVFLFFISSSSAAD 26 (372)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (372)
|+.+++++++++++.|++...
T Consensus 1 mk~i~~l~l~lll~~C~~~~~ 21 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPN 21 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCc
Confidence 677776665556666665554
Done!