BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017421
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G A I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLAASSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + S+KFS +G L A S+D I ++ K I H ++ V + +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NL 82
Query: 285 IYSGSDDNLCKVNSV 299
+ S SDD K+ V
Sbjct: 83 LVSASDDKTLKIWDV 97
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 52 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 108
Query: 191 PIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 109 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 197
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 189
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 190 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 234
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 235
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 236 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 282
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 323
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 100
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 101 LLVSASDDKTLKIWDV 116
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 173
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 174 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 218
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 307
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSPEFQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299
K I H ++ V + +S +L+ S SDD K+ V
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV 100
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 26 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 82
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 83 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 171
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 163
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 164 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 208
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 256
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 210 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 256
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 257 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 297
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 16 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 74
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 75 LLVSASDDKTLKIWDV 90
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 47 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 103
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 104 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 184
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 185 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 229
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 277
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 231 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 277
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 278 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 318
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 37 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 95
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 96 LLVSASDDKTLKIWDV 111
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 173
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 174 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 218
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 307
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 LGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299
K I H ++ V + +S +L+ S SDD K+ V
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV 100
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 54 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 110
Query: 191 PIVHIVDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 111 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 199
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 191
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 192 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 236
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 237
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 238 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 284
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 325
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 44 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 102
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 103 LLVSASDDKTLKIWDV 118
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 36 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 92
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 93 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 181
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 173
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 174 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 218
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 266
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 220 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 266
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 267 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 307
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257
+GS +S + + L F+ A G++ + S+KFS +G L + S+D I ++
Sbjct: 3 MGSSATQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
Query: 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299
K I H ++ V + +S +L+ S SDD K+ V
Sbjct: 60 DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV 100
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 35 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 91
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 92 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 180
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 172
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 173 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 217
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 265
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 219 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 265
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 266 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 306
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 25 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 83
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 84 LLVSASDDKTLKIWDV 99
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 175
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 167
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 168 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 212
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 301
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 78
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 79 LLVSASDDKTLKIWDV 94
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 29 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 85
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 86 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 166
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 167 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 211
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 259
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 213 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 259
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 260 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 300
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 19 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 77
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 78 LLVSASDDKTLKIWDV 93
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 30 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 86
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 87 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 175
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 167
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 168 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 212
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 260
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 214 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 260
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 261 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 301
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 78
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 79 LLVSASDDKTLKIWDV 94
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 31 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 87
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 88 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 176
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 168
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 169 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 213
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 261
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 215 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 261
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 262 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 302
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260
G+ +S + + L F+ A G++ + S+KFS +G L + S+D I ++ K
Sbjct: 1 GSTQSKPTPVKPNYALKFTLA---GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 57
Query: 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299
I H ++ V + +S +L+ S SDD K+ V
Sbjct: 58 FEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDV 95
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NL 82
Query: 285 IYSGSDDNLCKVNSV 299
+ S SDD K+ V
Sbjct: 83 LVSASDDKTLKIWDV 97
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ K + AH+ V+ V F + G LI S S D LC++
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTVC--FGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DNL
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 263
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNL 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-NL 82
Query: 285 IYSGSDDNLCKVNSV 299
+ S SDD K+ V
Sbjct: 83 LVSASDDKTLKIWDV 97
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
PVD A+ FS D G ++ I+ VE G +K+ + + + S
Sbjct: 122 PVD-----AWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYS 173
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
PD ++L ++ I++I D+ +G L + E G++ I SL FS D
Sbjct: 174 PDGKYLASGAIDGIINIFDIATG---KLLHTLE-------------GHAMPIRSLTFSPD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
+ LV S D I +YD++ L+ + H S V V F + H
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ + AH+ V+ V F + G LI S S D LC++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NTLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-MCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DN+
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 82 LLVSASDDKTLKIWDV 97
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
V+ SP+ L +S ++ I G E + G+ GI
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGIS 72
Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291
+ +S+D LV+ S D + ++D+ + K + H++ V F +S +LI SGS D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFD 131
Query: 292 NLCKVNSV 299
++ V
Sbjct: 132 ESVRIWDV 139
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
+FS +G + I+I+ G K +K I L ++D + S D LV AS
Sbjct: 33 KFSPNGEWLASSSADKLIKIWGAYDG-KFEKTISGHKLG--ISDVAWSSDSNLLVSASDD 89
Query: 191 PIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249
+ I DV SG +++L G+S +F F+ +V+GS D+
Sbjct: 90 KTLKIWDVSSGKCLKTLK-----------------GHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++D++ + AH+ V+ V F + G LI S S D LC++
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHF-NRDGSLIVSSSYDGLCRI 178
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
F+ DGSL V+ RI+D G ++ L V+ SP+ ++++ A++
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLK--TLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
+ + D G + L T H + F FS+ T G+ +V+GS D+
Sbjct: 217 NDLKLWDYSKG--KCLKTYTG-HKNEKYCI-------FANFSV---TGGKWIVSGSEDNM 263
Query: 251 IYVYDLEANKLSLRILAHTSDV-NTVCFGDESGHLIYSGSDDN 292
+Y+++L+ ++ ++ HT V +T C E ++I S + +N
Sbjct: 264 VYIWNLQTKEIVQKLQGHTDVVISTACHPTE--NIIASAALEN 304
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283
G++ + S+KFS +G L + S+D I ++ K I H ++ V + +S +
Sbjct: 23 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-N 81
Query: 284 LIYSGSDDNLCKVNSV 299
L+ S SDD K+ V
Sbjct: 82 LLVSASDDKTLKIWDV 97
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187
+ F+ +L V+G +RI+DV+ G K + A S V+ + D +V +
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTG-MCLKTLPAHSD--PVSAVHFNRDGSLIVSS 170
Query: 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247
S + I D SG T I D D+ SF +KFS +G+ ++A +
Sbjct: 171 SYDGLCRIWDTASGQCLK----TLIDD-------DNPPVSF----VKFSPNGKYILAATL 215
Query: 248 DDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYSGSDDNL 293
D+ + ++D K H ++ + F G I SGS+DN+
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNM 263
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231
V+ SP+ L +S ++ I G E + G+ GI
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS----------------GHKLGIS 72
Query: 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291
+ +S+D LV+ S D + ++D+ + K + H++ V F +S +LI SGS D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFD 131
Query: 292 NLCKVNSV 299
++ V
Sbjct: 132 ESVRIWDV 139
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 192
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGIF---S 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 312
Query: 292 NL 293
+
Sbjct: 313 GM 314
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 126 RAYVSQ-----FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180
+A+VS+ F G ++ Q Q++I+ V+ G + I R TVTD ++
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GHRATVTDIAIIDR 189
Query: 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTE-IHDGLD----FSAADDGGYSFGIF---S 232
R+++ AS+ + + + G+GT N E HDG++ F D + +
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TSDVNTVCFGDESGHLIYSGSDD 291
L+F T G+ ++AG I V+++ + + ++++ + T N++ + + IY+G ++
Sbjct: 250 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN 309
Query: 292 NL 293
+
Sbjct: 310 GM 311
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 285 IYSGSDDNLCKVNSVL 300
+ SGS D K+ + L
Sbjct: 121 V-SGSRDKTIKLWNTL 135
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 33/168 (19%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLV 185
S+DG ++G +R++D+ G + KD+L+ + S D R +V
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS---------VAFSSDNRQIV 121
Query: 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LV 243
S + + + G+ D +S + ++FS + +V
Sbjct: 122 SGSRDKTIKLWNT---------------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 166
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291
+ D + V++L KL + HT +NTV + G L SG D
Sbjct: 167 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-GSLCASGGKD 213
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKV 296
DD C++
Sbjct: 246 DDATCRL 252
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVNSVLLLTRS 305
L+ +G DD C V L R+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRA 305
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKV 296
+ G DN+C +
Sbjct: 112 VACGGLDNICSI 123
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFG-DESGHLIY 286
GI S+ FS GR L+AG D V+D L+A++ + + H + V+ C G + G +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-LAGHDNRVS--CLGVTDDGMAVA 328
Query: 287 SGSDDNLCKV 296
+GS D+ K+
Sbjct: 329 TGSWDSFLKI 338
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKV 296
DD C++
Sbjct: 246 DDATCRL 252
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVNSVLLLTRS 305
L+ +G DD C V L R+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRA 305
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R L++ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKV 296
+ G DN+C +
Sbjct: 112 VACGGLDNICSI 123
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFG-DESGHLIY 286
GI S+ FS GR L+AG D V+D L+A++ + + H + V+ C G + G +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-LAGHDNRVS--CLGVTDDGMAVA 328
Query: 287 SGSDDNLCKV 296
+GS D+ K+
Sbjct: 329 TGSWDSFLKI 338
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKV 296
DD C++
Sbjct: 246 DDATCRL 252
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVNSVLLLTRS 305
L+ +G DD C V L R+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRA 305
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKV 296
+ G DN+C +
Sbjct: 112 VACGGLDNICSI 123
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFG-DESGHLIY 286
GI S+ FS GR L+AG D V+D L+A++ + + H + V+ C G + G +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-LAGHDNRVS--CLGVTDDGMAVA 328
Query: 287 SGSDDNLCKV 296
+GS D+ K+
Sbjct: 329 TGSWDSFLKI 338
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 245
Query: 290 DDNLCKV 296
DD C++
Sbjct: 246 DDATCRL 252
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 187 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 227
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 283
Query: 284 LIYSGSDDNLCKVNSVLLLTRS 305
L+ +G DD C V L R+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRA 305
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R L++ S D + ++D I +S V T + SG+
Sbjct: 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 111
Query: 285 IYSGSDDNLCKV 296
+ G DN+C +
Sbjct: 112 VACGGLDNICSI 123
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
GI S+ FS GR L+AG D V+D L+A++ + + H + V+ + D+ G + +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDD-GMAVAT 329
Query: 288 GSDDNLCKV 296
GS D+ K+
Sbjct: 330 GSWDSFLKI 338
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL + R + HT DV +V F ++ +
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 285 IYSGSDDNLCKVNSVL 300
+ SGS D K+ + L
Sbjct: 144 V-SGSRDKTIKLWNTL 158
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 33/168 (19%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLV 185
S+DG ++G +R++D+ G + KD+L+ + S D R +V
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS---------VAFSSDNRQIV 144
Query: 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LV 243
S + + + G+ D +S + ++FS + +V
Sbjct: 145 SGSRDKTIKLWNT---------------LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291
+ D + V++L KL + HT +NTV + G L SG D
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD-GSLCASGGKD 236
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ SL + D R V+G+ D ++D+ H SD+N +CF +G+ +GS
Sbjct: 198 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGS 256
Query: 290 DDNLCKV 296
DD C++
Sbjct: 257 DDATCRL 263
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 31/142 (21%)
Query: 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL---DFSAADDGGYSF 228
V SL+PD R V SG ++ A + ++ +G+ F+ G+
Sbjct: 198 VMSLSLAPDTRLFV--------------SGACDASAKLWDVREGMCRQTFT-----GHES 238
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD-----VNTVCFGDESGH 283
I ++ F +G GS D ++DL A++ ++ ++ D + +V F +SG
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNIICGITSVSFS-KSGR 294
Query: 284 LIYSGSDDNLCKVNSVLLLTRS 305
L+ +G DD C V L R+
Sbjct: 295 LLLAGYDDFNCNVWDALKADRA 316
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+++ + TD R LV+ S D + ++D I +S V T + SG+
Sbjct: 64 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNY 122
Query: 285 IYSGSDDNLCKV 296
+ G DN+C +
Sbjct: 123 VACGGLDNICSI 134
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
GI S+ FS GR L+AG D V+D L+A++ + + H + V+ + D+ G + +
Sbjct: 283 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV-LAGHDNRVSCLGVTDD-GMAVAT 340
Query: 288 GSDDNLCKV 296
GS D+ K+
Sbjct: 341 GSWDSFLKI 349
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSDVNTVCFGDE-SG 282
G++ + S+ FS D R++V+G D+ + V++++ + +L AHT V+ V F
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 283 HLIYSGSDDNLCKV 296
+I SG DNL KV
Sbjct: 167 PVIVSGGWDNLVKV 180
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 28/199 (14%)
Query: 127 AYVSQ--FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
A+VS S +G+ V+ +R+++++ G + Q L + V + SPD R +
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNG-QCQYKFLGHTK--DVLSVAFSPDNRQI 124
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGREL 242
V + + +V M +L+ G ++ + ++FS D +
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSR---------------GAHTDWVSCVRFSPSLDAPVI 169
Query: 243 VAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV-----N 297
V+G D+ + V+DL +L + HT+ V +V + G L S D + ++
Sbjct: 170 VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWDLTKG 228
Query: 298 SVLLLTRSINPCNKYLFNP 316
L + P N+ F+P
Sbjct: 229 EALSEMAAGAPINQICFSP 247
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S +G V+ S D + +++L+ + + L HT DV +V F ++ +
Sbjct: 65 GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 285 IYSGSDDNL 293
+ G D+ L
Sbjct: 125 VSGGRDNAL 133
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 33/199 (16%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ R ++ + + S +V + SPD + + AS
Sbjct: 188 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDK 243
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDF--------SAADDG----------------GYS 227
V + + +++L + +G+ F SA+DD G+S
Sbjct: 244 TVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 303
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
++ + FS DG+ + + S D + +++ L + H+S V V F + G I S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPD-GQTIAS 361
Query: 288 GSDDNLCKV---NSVLLLT 303
SDD K+ N LL T
Sbjct: 362 ASDDKTVKLWNRNGQLLQT 380
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S ++ + FS DG+ + + S D + +++ L + H+S V V F + G
Sbjct: 55 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQT 112
Query: 285 IYSGSDDNLCKV---NSVLLLT 303
I S SDD K+ N LL T
Sbjct: 113 IASASDDKTVKLWNRNGQLLQT 134
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 33/199 (16%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 24 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 79
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFS--------AADDG----------------GYS 227
V + + +++L + G+ FS A+DD G+S
Sbjct: 80 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS 139
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287
++ + FS DG+ + + S D + +++ L + H+S V V F + G I S
Sbjct: 140 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPD-GQTIAS 197
Query: 288 GSDDNLCKV---NSVLLLT 303
SDD K+ N LL T
Sbjct: 198 ASDDKTVKLWNRNGQLLQT 216
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 26/175 (14%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 393 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPDDQTIASASDDK 448
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S + + FS DG+ + + S D +
Sbjct: 449 TVKLWNRNGQLLQTLT-----------------GHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV---NSVLLLT 303
+++ L + H+S V V F + G I S SDD K+ N LL T
Sbjct: 492 KLWNRNGQLLQT-LTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQT 544
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG + +++++ G +Q S W V + SPD + + AS
Sbjct: 311 FSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGV---AFSPDGQTIASASDDK 366
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V + + +++L G+S + + FS DG+ + + S D +
Sbjct: 367 TVKLWNRNGQLLQTLT-----------------GHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 252 YVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV---NSVLLLT 303
+++ L + H+S V V F + I S SDD K+ N LL T
Sbjct: 410 KLWNRNGQLLQT-LTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQLLQT 462
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
I S+ FS DG+ L G+ D I ++D+E K+ + + H D+ ++ + SG + SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGS 184
Query: 290 DDNLCKV 296
D ++
Sbjct: 185 GDRTVRI 191
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 194
G V+G +RI+D+ G + L S+ VT ++SP D +++ S+ V
Sbjct: 177 GDKLVSGSGDRTVRIWDLRTG----QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254
+ D +G + + LD G+ ++S+ F+ DG+ +V+GS D + ++
Sbjct: 233 VWDSETGFLV---------ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 255 DLE 257
+L+
Sbjct: 284 NLQ 286
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+ I+SL + G +LV+GS D + ++DL + SL L+ V TV G
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL-TLSIEDGVTTVAVSPGDGKY 221
Query: 285 IYSGSDDNLCKV 296
I +GS D +V
Sbjct: 222 IAAGSLDRAVRV 233
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191
FS DG G + IRI+D+E + ++ + + P LV S
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251
V I D+ +G + I DG+ A G DG+ + AGS D +
Sbjct: 188 TVRIWDLRTG---QCSLTLSIEDGVTTVAVSPG-------------DGKYIAAGSLDRAV 231
Query: 252 YVYDLEANKLSLRI-------LAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
V+D E L R+ H V +V F G + SGS D K+
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLDRSVKL 282
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + S+DG+ ++GS D + ++DL A + R + HT DV +V F ++ +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 285 IYSGSDDNLCKVNSVL 300
+ S S D K+ + L
Sbjct: 488 V-SASRDRTIKLWNTL 502
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 132 FSADGSLFVAGFQASQIRIYDVERGWKIQ------KDILAKSLRWTVTDTSLSPDQRHLV 185
S+DG ++G ++R++D+ G + KD+L+ + S D R +V
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLS---------VAFSLDNRQIV 488
Query: 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE--LV 243
AS + + + +++ E G+ + ++FS + + +V
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGE-------------GHRDWVSCVRFSPNTLQPTIV 535
Query: 244 AGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294
+ S D + V++L KL + HT V+TV + G L SG D +
Sbjct: 536 SASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVV 585
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 18/175 (10%)
Query: 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184
SR + ++ G+L + +IRI+ E I K +L++ + TV + SP +L
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244
AS I E + + G+ + S+ ++ G L
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLE--------------GHENEVKSVAWAPSGNLLAT 122
Query: 245 GSSDDCIYVY--DLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
S D ++V+ D E + +L +HT DV V + S L+ S S D+ K+
Sbjct: 123 CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKL 176
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 122 IISGSRDKTIKVWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 115
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 116 IISGSRDKTIKVWTI 130
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 122 IISGSRDKTIKVWTI 136
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 122 IISGSRDKTIKVWTI 136
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+ +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-DKKASM 121
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 122 IISGSRDKTIKVWTI 136
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G+S + + DG ++ S D + ++D+ + R + H SDV +V D+
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-DKKASX 121
Query: 285 IYSGSDDNLCKVNSV 299
I SGS D KV ++
Sbjct: 122 IISGSRDKTIKVWTI 136
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290
L S G V+G D V+D+ + + H SDVN+V + SG SGSD
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY-YPSGDAFASGSD 260
Query: 291 DNLCKV 296
D C++
Sbjct: 261 DATCRL 266
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYD-LEANKLSLRILAHTSDVNTVCFGDESGHLIY 286
FG S+ FS GR L AG +D I V+D L+ +++S+ + H + V+T+ + G
Sbjct: 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI-LFGHENRVSTLRVSPD-GTAFC 342
Query: 287 SGSDDNLCKV 296
SGS D+ +V
Sbjct: 343 SGSWDHTLRV 352
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 31/174 (17%)
Query: 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179
D++T A V ++S DGS G + IYDVE K+ + + R LS
Sbjct: 131 TDESTYVASV-KWSHDGSFLSVGLGNGLVDIYDVESQTKL-RTMAGHQAR----VGCLSW 184
Query: 180 DQRHLVYASMSPIVHIVDV-----GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234
++ L S S +H DV GT++ G+S + L
Sbjct: 185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ--------------------GHSSEVCGLA 224
Query: 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288
+ +DG +L +G +D+ + ++D ++ H + V V + +L+ +G
Sbjct: 225 WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATG 278
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242
++V ++ V++ + SG++ +LA E S + S+K+S DG L
Sbjct: 105 NVVAVALERNVYVWNADSGSVSALAETDE---------------STYVASVKWSHDGSFL 149
Query: 243 VAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESGHLIYSGS 289
G + + +YD+E+ + LR +A H + V + + + H++ SGS
Sbjct: 150 SVGLGNGLVDIYDVES-QTKLRTMAGHQARVGCLSW---NRHVLSSGS 193
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 658 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 276 CFGDESGHLIY-SGSDDNLCKV---------NSVLLLTRSINPCNKYLFNP 316
F ++S HL+ +GS+D K+ N++ T S+N C F+P
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR---FSP 760
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1071
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1072 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1115
Query: 251 IYVY---------DLEANKLSLRILAHTSDVNTVCFGDESGHL-IYSGSDDNL 293
++ +L+ + +R A + D + GD++G + I++ SD L
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1198
Query: 183 HLVYA 187
LV A
Sbjct: 1199 TLVSA 1203
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288
++ FS DG+ + + +D + V+ E + L I AH +V F + ++
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 683
Query: 289 SDDNL 293
+D +
Sbjct: 684 ADKKV 688
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275
LD A +D + FS+D + S+D + ++D KL H+ VN
Sbjct: 651 LDIKAHEDE-----VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 705
Query: 276 CFGDESGHLIY-SGSDDNLCKV---------NSVLLLTRSINPCNKYLFNP 316
F ++S HL+ +GS+D K+ N++ T S+N C F+P
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR---FSP 753
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 31/173 (17%)
Query: 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190
QF+ADG ++ + S I++++ W+ + ++ + TV D L D R L + S
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWN----WQTGDYVFLQAHQETVKDFRLLQDSRLLSW-SFD 1064
Query: 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250
V + +V +G +E DF+ + + S S+D + + S+D
Sbjct: 1065 GTVKVWNVITGRIER-----------DFTC-----HQGTVLSCAISSDATKFSSTSADKT 1108
Query: 251 IYVY---------DLEANKLSLRILAHTSDVNTVCFGDESGHL-IYSGSDDNL 293
++ +L+ + +R A + D + GD++G + I++ SD L
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ-------KDILAKSLRWTVTDTSLSPDQR 182
S FS DG L G +IRI++V G + ++ A W VTD SPD +
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPDSK 1191
Query: 183 HLVYA 187
LV A
Sbjct: 1192 TLVSA 1196
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 29/65 (44%)
Query: 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288
++ FS DG+ + + +D + V+ E + L I AH +V F + ++
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676
Query: 289 SDDNL 293
+D +
Sbjct: 677 ADKKV 681
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 13/178 (7%)
Query: 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLS 178
+TT++ +S DG+ V G + ++R+++ + L L R + +
Sbjct: 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-------KTGALLNVLNFHRAPIVSVKWN 158
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
D H++ + + + +V SGT+ + E + G S G+ +++ D
Sbjct: 159 KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDD 217
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+ ++ G I+VY + + +++ H ++ + F D + L+ S SDD ++
Sbjct: 218 DKFVIPGPKG-AIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRI 273
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 146 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 196
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 197 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 241
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 242 GRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 157 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 207
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 208 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 252
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 253 GRHLASGGNDNLVNVW 268
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178
P + +S A++ +G+ G +++++++DV++ K +++ + S R SLS
Sbjct: 66 PGEYISSVAWIK----EGNYLAVGTSSAEVQLWDVQQQ-KRLRNMTSHSAR----VGSLS 116
Query: 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
+ L S S +H DV V E H A G+S + L+++ D
Sbjct: 117 WNSYILSSGSRSGHIHHHDV---------RVAEHH------VATLSGHSQEVCGLRWAPD 161
Query: 239 GRELVAGSSDDCIYVY 254
GR L +G +D+ + V+
Sbjct: 162 GRHLASGGNDNLVNVW 177
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289
+ ++ + G + V+GS D CI V+DL + AH + V V + S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 290 DDN 292
+DN
Sbjct: 190 EDN 192
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ ++SL+F DG +V+GS D I V+D+E + H S + + D ++
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NI 331
Query: 285 IYSGSDDNLCKV 296
+ SG+ D+ K+
Sbjct: 332 LVSGNADSTVKI 343
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 183 HLVYASMSPI----VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD 238
H +Y S + +H V SG+ ++ V +I G G+ + +++ D
Sbjct: 193 HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL--MGHVAAVRCVQY--D 248
Query: 239 GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS 298
GR +V+G+ D + V+D E + HT+ V ++ F G + SGS D +V
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWD 305
Query: 299 V 299
V
Sbjct: 306 V 306
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296
+V+ S D I V+D E + HT V + F D SG L+ S S D K+
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF-DHSGKLLASCSADMTIKL 176
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 187 ASMSPIVHIVDVGSGTMESLANVTE 211
S P+VH++DV SG ++SL N E
Sbjct: 1 GSHMPVVHVIDVESGNLQSLTNAIE 25
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 39/190 (20%)
Query: 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194
D + + G S +R++DV G ++L + L + +V S +
Sbjct: 182 DERVIITGSSDSTVRVWDVNTG-----EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 236
Query: 195 IVDVGSGTMESL----------ANVTEIHDGLDFSAADD-----------------GGYS 227
+ D+ S T +L NV + D SA+ D G+
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 296
Query: 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIY 286
GI L++ R +V+GSSD+ I ++D+E LR+L H V + F ++ I
Sbjct: 297 RGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-CLRVLEGHEELVRCIRFDNKR---IV 350
Query: 287 SGSDDNLCKV 296
SG+ D KV
Sbjct: 351 SGAYDGKIKV 360
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286
S G++ L++ D +++V+G D+ I ++D + + HT V + + + +I
Sbjct: 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER---VII 187
Query: 287 SGSDDNLCK---VNSVLLLTRSINPCNKYL 313
+GS D+ + VN+ +L I+ C L
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV--CFGDESGHLIYS 287
+ +L +DG + V+G D + V+DL + AH+S+VN V C G ++ +
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT-IFLSC 200
Query: 288 GSDDNLCKVNSVLLLTRSINPCNKYLF 314
G D + +L TR P + F
Sbjct: 201 GEDGRI-----LLWDTRKPKPATRIDF 222
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHL 184
A V+ +S G +AG + +I YDV ++ D+ KS ++D SPD +
Sbjct: 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSPDLTYF 233
Query: 185 VYASMSPIVHIVDVGS 200
+ +S +VDV +
Sbjct: 234 ITSSRDTNSFLVDVST 249
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 213 HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSD 271
H+GLD AA G+S T G+ ++AG D I YD+ N + I H
Sbjct: 172 HEGLD--AATVAGWS---------TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS 220
Query: 272 VNTVCFGDESGHLIYSGSDDN--LCKVNSVLLLTRSINPC 309
++ + F + + I S D N L V+++ +L + C
Sbjct: 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC 260
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 230 IFSLKFSTDGRELVAGSSDDCIYVYD--LEANKLSLRILAHTSDVNTVCFGDES-GHLIY 286
+ S+ FS GR L AG S+ YV+D L L+L L ++ + C G S G +
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 287 SGSDDNLCKV 296
+GS D K+
Sbjct: 361 TGSWDKNLKI 370
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/69 (20%), Positives = 34/69 (49%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284
G++ + L S + ++ S D + ++DL R + H S+V +V F ++ +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 285 IYSGSDDNL 293
+ +G++ +
Sbjct: 134 LSAGAEREI 142
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280
G++ I+S + + + ++ S D I ++DLE +L + HT+ V + D+
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK 363
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 48/194 (24%)
Query: 134 ADGSLFVAGFQASQIRIYDVERG--------------------WKIQKDILAKSLR---- 169
A G + V+G +R++D+++G +K K I+ S
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 170 -WTVTDTSLSPD--QRH---LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223
W + S PD + H LV+ + + V V G M S+ V+ H + S + D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYD 289
Query: 224 G-----------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266
G++ I+S + + + ++ S D I ++DLE +L +
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
Query: 267 AHTSDVNTVCFGDE 280
HT+ V + D+
Sbjct: 350 GHTALVGLLRLSDK 363
>pdb|2RD7|A Chain A, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 367
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 226 YSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282
Y++G+++ KF D G + S IY Y L +K + L TS T CFG G
Sbjct: 200 YNYGMYA-KFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLG 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,433,865
Number of Sequences: 62578
Number of extensions: 407693
Number of successful extensions: 1312
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 211
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)