Query 017421
Match_columns 372
No_of_seqs 455 out of 3540
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 08:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-40 4.2E-45 282.6 15.1 228 100-353 193-429 (459)
2 KOG0271 Notchless-like WD40 re 100.0 3.9E-38 8.4E-43 265.5 20.2 256 75-355 100-410 (480)
3 KOG0286 G-protein beta subunit 100.0 1.5E-36 3.3E-41 247.7 26.0 284 47-354 4-315 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-38 1.4E-42 267.1 15.7 217 99-340 236-458 (459)
5 KOG0263 Transcription initiati 100.0 4.4E-35 9.5E-40 267.9 20.6 203 119-347 446-654 (707)
6 KOG0279 G protein beta subunit 100.0 3.2E-34 6.9E-39 232.7 23.0 225 100-350 34-270 (315)
7 KOG0286 G-protein beta subunit 100.0 3.2E-33 7E-38 228.3 23.9 213 118-350 49-267 (343)
8 KOG0271 Notchless-like WD40 re 100.0 8.2E-33 1.8E-37 233.4 20.0 210 118-353 109-366 (480)
9 KOG0315 G-protein beta subunit 100.0 1.2E-31 2.7E-36 214.4 23.0 230 100-355 57-301 (311)
10 KOG0279 G protein beta subunit 100.0 1.4E-30 3.1E-35 211.6 25.0 234 82-342 55-313 (315)
11 KOG0273 Beta-transducin family 100.0 2.7E-31 5.9E-36 229.7 21.9 221 124-354 235-494 (524)
12 KOG0291 WD40-repeat-containing 100.0 1.2E-30 2.5E-35 237.4 25.0 225 104-353 330-561 (893)
13 KOG0285 Pleiotropic regulator 100.0 7.5E-31 1.6E-35 219.9 18.8 213 118-357 145-363 (460)
14 KOG0263 Transcription initiati 100.0 7.2E-31 1.6E-35 240.4 20.0 200 82-301 443-650 (707)
15 KOG0295 WD40 repeat-containing 100.0 6.9E-31 1.5E-35 220.5 16.2 236 100-359 126-381 (406)
16 KOG0266 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 236.5 26.2 237 92-354 166-421 (456)
17 KOG0266 WD40 repeat-containing 100.0 1.4E-29 3E-34 236.1 25.6 210 122-355 157-377 (456)
18 KOG0315 G-protein beta subunit 100.0 2.1E-29 4.5E-34 201.7 22.5 240 100-365 16-278 (311)
19 KOG0645 WD40 repeat protein [G 100.0 6.3E-29 1.4E-33 201.2 25.1 204 118-342 8-225 (312)
20 KOG0284 Polyadenylation factor 100.0 5.1E-31 1.1E-35 224.3 13.5 200 117-341 172-379 (464)
21 KOG0284 Polyadenylation factor 100.0 1.1E-30 2.4E-35 222.3 13.8 216 103-343 117-338 (464)
22 KOG0316 Conserved WD40 repeat- 100.0 1.9E-29 4.1E-34 200.4 18.4 214 113-354 6-225 (307)
23 KOG0282 mRNA splicing factor [ 100.0 1.3E-29 2.8E-34 220.1 15.8 231 108-365 198-486 (503)
24 PTZ00421 coronin; Provisional 100.0 1.6E-27 3.5E-32 221.7 30.2 211 118-350 69-298 (493)
25 KOG0282 mRNA splicing factor [ 100.0 6.6E-29 1.4E-33 215.7 19.1 239 75-340 199-503 (503)
26 KOG0265 U5 snRNP-specific prot 100.0 6.8E-28 1.5E-32 197.9 21.1 236 93-355 55-309 (338)
27 KOG0281 Beta-TrCP (transducin 100.0 4.7E-29 1E-33 208.5 13.6 215 100-347 213-433 (499)
28 KOG0265 U5 snRNP-specific prot 100.0 9.2E-28 2E-32 197.1 20.4 212 117-354 40-262 (338)
29 KOG0318 WD40 repeat stress pro 100.0 1E-26 2.2E-31 204.1 27.3 245 101-352 167-527 (603)
30 KOG0640 mRNA cleavage stimulat 100.0 8E-28 1.7E-32 198.4 19.1 218 117-355 105-348 (430)
31 KOG0285 Pleiotropic regulator 100.0 1.4E-27 3E-32 200.4 19.3 246 77-350 138-397 (460)
32 PTZ00420 coronin; Provisional 100.0 2.7E-26 5.9E-31 214.7 30.2 218 104-345 54-296 (568)
33 KOG0292 Vesicle coat complex C 100.0 1.2E-27 2.6E-32 221.2 20.0 221 104-350 31-288 (1202)
34 KOG0295 WD40 repeat-containing 100.0 3.7E-27 7.9E-32 198.2 20.1 209 106-340 174-404 (406)
35 KOG0273 Beta-transducin family 100.0 2.5E-26 5.4E-31 199.1 25.4 202 106-325 259-512 (524)
36 KOG0291 WD40-repeat-containing 100.0 2.1E-25 4.7E-30 203.3 30.1 245 93-344 153-510 (893)
37 KOG0645 WD40 repeat protein [G 100.0 1.2E-25 2.6E-30 182.2 25.2 215 100-331 33-257 (312)
38 KOG0296 Angio-associated migra 100.0 3E-26 6.6E-31 192.8 22.4 232 98-355 80-369 (399)
39 cd00200 WD40 WD40 domain, foun 100.0 1.8E-25 3.8E-30 196.0 28.5 229 100-354 27-261 (289)
40 KOG0276 Vesicle coat complex C 100.0 5.1E-27 1.1E-31 209.8 18.5 214 118-356 7-229 (794)
41 KOG0319 WD40-repeat-containing 100.0 1.6E-26 3.5E-31 210.2 22.0 240 79-341 354-618 (775)
42 KOG0277 Peroxisomal targeting 100.0 5.6E-27 1.2E-31 188.3 16.3 217 100-341 79-308 (311)
43 KOG0319 WD40-repeat-containing 100.0 8.9E-27 1.9E-31 211.9 19.7 239 101-354 343-589 (775)
44 cd00200 WD40 WD40 domain, foun 100.0 1.3E-25 2.8E-30 196.9 26.8 211 118-354 3-219 (289)
45 KOG0289 mRNA splicing factor [ 99.9 5.5E-26 1.2E-30 195.2 22.6 233 99-354 236-476 (506)
46 KOG0316 Conserved WD40 repeat- 99.9 7.9E-26 1.7E-30 179.9 21.9 248 79-354 6-269 (307)
47 PLN00181 protein SPA1-RELATED; 99.9 1.4E-25 3E-30 224.1 28.7 211 120-354 479-708 (793)
48 KOG0277 Peroxisomal targeting 99.9 8.1E-27 1.7E-31 187.4 15.9 211 123-357 59-281 (311)
49 KOG0275 Conserved WD40 repeat- 99.9 5.6E-27 1.2E-31 194.5 15.4 251 92-366 220-492 (508)
50 KOG0318 WD40 repeat stress pro 99.9 5.1E-25 1.1E-29 193.4 27.3 244 97-348 32-356 (603)
51 KOG0276 Vesicle coat complex C 99.9 5.3E-26 1.2E-30 203.3 21.0 221 105-350 36-265 (794)
52 KOG0281 Beta-TrCP (transducin 99.9 3.7E-27 8E-32 197.2 11.5 233 82-347 229-482 (499)
53 KOG0643 Translation initiation 99.9 6.5E-25 1.4E-29 177.7 23.4 210 116-352 2-230 (327)
54 PLN00181 protein SPA1-RELATED; 99.9 1.4E-24 3.1E-29 216.8 31.2 229 93-349 491-745 (793)
55 KOG4283 Transcription-coupled 99.9 5.7E-26 1.2E-30 186.3 16.6 216 107-345 26-279 (397)
56 KOG0313 Microtubule binding pr 99.9 7.4E-26 1.6E-30 191.3 17.8 245 100-353 121-388 (423)
57 KOG0293 WD40 repeat-containing 99.9 7.6E-26 1.7E-30 193.2 17.8 220 112-354 212-437 (519)
58 KOG0283 WD40 repeat-containing 99.9 9.9E-26 2.2E-30 208.4 18.9 194 120-334 262-531 (712)
59 KOG0292 Vesicle coat complex C 99.9 5.7E-25 1.2E-29 203.7 23.5 243 100-353 69-332 (1202)
60 KOG0305 Anaphase promoting com 99.9 4.9E-25 1.1E-29 198.6 21.5 233 104-360 197-437 (484)
61 KOG0313 Microtubule binding pr 99.9 5.6E-25 1.2E-29 186.1 20.0 216 100-340 165-416 (423)
62 KOG1407 WD40 repeat protein [F 99.9 5.5E-25 1.2E-29 177.6 18.9 247 118-366 14-296 (313)
63 KOG0643 Translation initiation 99.9 2.1E-24 4.6E-29 174.8 22.2 224 94-339 21-314 (327)
64 KOG0306 WD40-repeat-containing 99.9 4.7E-25 1E-29 201.1 19.2 204 117-343 447-665 (888)
65 KOG0310 Conserved WD40 repeat- 99.9 1.4E-24 3.1E-29 189.1 20.7 216 108-351 52-277 (487)
66 KOG0274 Cdc4 and related F-box 99.9 3.2E-24 7E-29 200.1 24.1 230 100-362 224-462 (537)
67 KOG0264 Nucleosome remodeling 99.9 1.1E-24 2.3E-29 188.5 18.4 206 118-342 171-404 (422)
68 KOG0296 Angio-associated migra 99.9 9.1E-24 2E-28 178.0 22.9 211 116-352 56-273 (399)
69 KOG0275 Conserved WD40 repeat- 99.9 2.8E-25 6E-30 184.5 13.1 187 122-324 211-411 (508)
70 PTZ00421 coronin; Provisional 99.9 1.6E-23 3.4E-28 195.1 26.2 209 124-345 20-248 (493)
71 KOG0772 Uncharacterized conser 99.9 2.7E-24 5.8E-29 188.5 19.1 238 100-348 185-451 (641)
72 KOG1407 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 169.9 21.2 239 98-341 36-310 (313)
73 KOG0772 Uncharacterized conser 99.9 1E-24 2.2E-29 191.2 16.2 224 109-345 152-397 (641)
74 KOG0293 WD40 repeat-containing 99.9 8.1E-24 1.7E-28 180.9 20.4 258 73-356 207-484 (519)
75 KOG0283 WD40 repeat-containing 99.9 1.8E-23 3.8E-28 193.6 24.0 199 119-345 364-579 (712)
76 KOG0310 Conserved WD40 repeat- 99.9 2.8E-24 6.1E-29 187.3 17.6 197 122-345 24-228 (487)
77 KOG0299 U3 snoRNP-associated p 99.9 2E-23 4.3E-28 180.8 21.0 196 121-344 199-412 (479)
78 KOG0278 Serine/threonine kinas 99.9 1.8E-24 3.8E-29 173.6 12.9 219 100-347 77-302 (334)
79 KOG1332 Vesicle coat complex C 99.9 2.2E-23 4.7E-28 166.9 17.8 225 98-342 27-286 (299)
80 KOG0640 mRNA cleavage stimulat 99.9 2E-23 4.3E-28 172.5 17.1 194 92-300 119-335 (430)
81 KOG0306 WD40-repeat-containing 99.9 7.7E-23 1.7E-27 186.7 22.4 233 100-353 390-633 (888)
82 KOG0973 Histone transcription 99.9 8.5E-23 1.8E-27 193.8 23.2 204 119-344 64-357 (942)
83 PTZ00420 coronin; Provisional 99.9 2.8E-22 6.1E-27 187.8 26.5 194 142-350 50-257 (568)
84 KOG0267 Microtubule severing p 99.9 8.5E-25 1.8E-29 198.6 9.1 198 108-325 54-257 (825)
85 KOG0641 WD40 repeat protein [G 99.9 1.7E-22 3.8E-27 160.1 21.0 205 120-341 85-348 (350)
86 KOG0288 WD40 repeat protein Ti 99.9 9.1E-24 2E-28 180.6 14.4 223 100-352 193-427 (459)
87 KOG0300 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 168.8 20.1 242 81-346 139-432 (481)
88 KOG0305 Anaphase promoting com 99.9 7.6E-23 1.6E-27 184.6 20.6 218 100-345 235-464 (484)
89 KOG0264 Nucleosome remodeling 99.9 2E-23 4.3E-28 180.6 16.1 213 121-347 121-352 (422)
90 KOG0289 mRNA splicing factor [ 99.9 4E-22 8.8E-27 171.5 23.1 208 100-325 279-495 (506)
91 KOG0973 Histone transcription 99.9 5.9E-23 1.3E-27 194.8 19.1 231 121-355 10-266 (942)
92 KOG1446 Histone H3 (Lys4) meth 99.9 2.2E-21 4.7E-26 161.1 26.0 234 92-353 21-273 (311)
93 KOG1446 Histone H3 (Lys4) meth 99.9 2E-21 4.4E-26 161.3 25.8 208 119-354 9-229 (311)
94 KOG0308 Conserved WD40 repeat- 99.9 4.3E-23 9.3E-28 185.6 16.5 231 100-343 43-286 (735)
95 KOG0274 Cdc4 and related F-box 99.9 9.7E-23 2.1E-27 190.2 19.5 232 100-366 267-506 (537)
96 KOG0641 WD40 repeat protein [G 99.9 9.8E-22 2.1E-26 155.8 22.1 212 123-354 31-273 (350)
97 KOG0300 WD40 repeat-containing 99.9 2.2E-23 4.8E-28 172.8 13.2 218 117-345 141-389 (481)
98 KOG0269 WD40 repeat-containing 99.9 3.8E-23 8.2E-28 189.3 12.6 211 126-357 89-312 (839)
99 KOG0302 Ribosome Assembly prot 99.9 2.7E-22 5.8E-27 169.8 16.2 171 116-300 203-378 (440)
100 KOG1332 Vesicle coat complex C 99.9 1.5E-22 3.2E-27 162.1 13.4 203 120-342 7-241 (299)
101 KOG2096 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 161.9 19.9 209 118-337 80-310 (420)
102 KOG1539 WD repeat protein [Gen 99.9 1.2E-21 2.7E-26 180.8 21.3 222 86-325 404-636 (910)
103 KOG0646 WD40 repeat protein [G 99.9 8E-22 1.7E-26 171.2 18.3 226 108-351 65-316 (476)
104 KOG1273 WD40 repeat protein [G 99.9 2.1E-21 4.5E-26 161.0 19.9 217 127-352 26-290 (405)
105 KOG0647 mRNA export protein (c 99.9 2.1E-21 4.5E-26 160.1 18.8 202 123-350 26-289 (347)
106 KOG0269 WD40 repeat-containing 99.9 3.6E-22 7.9E-27 183.0 15.5 198 100-316 106-319 (839)
107 KOG0278 Serine/threonine kinas 99.9 7.8E-23 1.7E-27 164.3 9.8 221 116-364 6-236 (334)
108 KOG0647 mRNA export protein (c 99.9 9.3E-21 2E-25 156.3 22.0 221 100-325 46-312 (347)
109 KOG4328 WD40 protein [Function 99.9 1.2E-21 2.5E-26 169.8 17.3 206 117-342 179-399 (498)
110 KOG0301 Phospholipase A2-activ 99.9 2.9E-21 6.2E-26 175.2 20.6 206 99-332 76-285 (745)
111 KOG0268 Sof1-like rRNA process 99.9 9.2E-22 2E-26 165.8 14.6 222 99-347 84-350 (433)
112 KOG0302 Ribosome Assembly prot 99.9 3E-21 6.4E-26 163.6 17.3 204 120-343 147-379 (440)
113 KOG0308 Conserved WD40 repeat- 99.9 4E-21 8.6E-26 173.1 18.3 223 100-345 91-330 (735)
114 KOG0294 WD40 repeat-containing 99.9 1.4E-20 3E-25 156.1 19.5 201 98-302 57-283 (362)
115 KOG1274 WD40 repeat protein [G 99.9 2E-20 4.4E-25 174.6 22.9 224 92-343 20-263 (933)
116 KOG1036 Mitotic spindle checkp 99.9 1.2E-20 2.6E-25 156.1 18.8 197 124-352 13-272 (323)
117 KOG0268 Sof1-like rRNA process 99.9 4E-22 8.6E-27 168.0 10.1 234 98-345 40-305 (433)
118 KOG0288 WD40 repeat protein Ti 99.9 2.7E-21 5.9E-26 165.5 15.0 210 100-339 237-458 (459)
119 KOG0267 Microtubule severing p 99.9 2.4E-22 5.1E-27 182.9 8.6 206 119-350 23-234 (825)
120 KOG0299 U3 snoRNP-associated p 99.9 8.1E-21 1.8E-25 164.7 16.9 214 117-354 135-369 (479)
121 KOG1539 WD repeat protein [Gen 99.9 3.1E-19 6.6E-24 165.2 27.5 244 100-353 178-617 (910)
122 KOG0294 WD40 repeat-containing 99.9 6E-20 1.3E-24 152.3 20.2 206 117-353 36-248 (362)
123 KOG0639 Transducin-like enhanc 99.8 2E-20 4.4E-25 163.9 15.2 189 121-325 416-611 (705)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.4E-18 3.1E-23 154.3 27.4 241 102-353 9-290 (300)
125 KOG1274 WD40 repeat protein [G 99.8 2.4E-19 5.2E-24 167.6 22.8 213 100-324 72-288 (933)
126 KOG2445 Nuclear pore complex c 99.8 1.3E-18 2.9E-23 144.0 23.5 238 98-345 29-321 (361)
127 KOG0646 WD40 repeat protein [G 99.8 1.6E-19 3.4E-24 157.1 18.9 208 94-319 90-332 (476)
128 KOG2055 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 152.7 21.4 245 98-365 229-502 (514)
129 KOG0270 WD40 repeat-containing 99.8 1.5E-19 3.3E-24 156.2 16.4 226 98-347 196-454 (463)
130 KOG0303 Actin-binding protein 99.8 5.4E-19 1.2E-23 150.8 18.9 210 118-350 75-302 (472)
131 KOG0639 Transducin-like enhanc 99.8 7.4E-20 1.6E-24 160.4 13.6 225 98-347 434-668 (705)
132 KOG0301 Phospholipase A2-activ 99.8 4.3E-19 9.4E-24 161.2 17.5 215 118-363 8-231 (745)
133 KOG4283 Transcription-coupled 99.8 5.6E-18 1.2E-22 139.6 21.8 207 121-353 98-334 (397)
134 KOG2096 WD40 repeat protein [G 99.8 4E-18 8.6E-23 141.9 20.3 243 80-347 76-365 (420)
135 KOG1408 WD40 repeat protein [F 99.8 9.6E-19 2.1E-23 159.4 17.8 210 124-343 459-714 (1080)
136 KOG1036 Mitotic spindle checkp 99.8 6.1E-18 1.3E-22 140.2 20.5 221 98-325 29-293 (323)
137 KOG0307 Vesicle coat complex C 99.8 1.2E-19 2.6E-24 173.4 11.5 210 123-352 63-294 (1049)
138 KOG2048 WD40 repeat protein [G 99.8 8.4E-18 1.8E-22 152.6 22.0 207 121-353 22-244 (691)
139 KOG1007 WD repeat protein TSSC 99.8 4.3E-18 9.3E-23 139.9 18.1 199 122-342 121-361 (370)
140 KOG0270 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 150.6 15.5 200 124-345 173-407 (463)
141 KOG2445 Nuclear pore complex c 99.8 2.4E-17 5.2E-22 136.6 22.1 207 120-333 9-254 (361)
142 KOG1408 WD40 repeat protein [F 99.8 4.5E-18 9.7E-23 155.1 18.2 226 128-353 328-637 (1080)
143 KOG4378 Nuclear protein COP1 [ 99.8 2.4E-18 5.1E-23 150.9 15.5 205 125-353 80-292 (673)
144 KOG0321 WD40 repeat-containing 99.8 7.5E-18 1.6E-22 151.9 17.9 229 118-355 94-361 (720)
145 KOG1063 RNA polymerase II elon 99.8 4.8E-18 1E-22 154.4 16.8 220 118-344 355-650 (764)
146 KOG0650 WD40 repeat nucleolar 99.8 7.6E-18 1.6E-22 150.8 17.7 243 113-361 389-710 (733)
147 KOG2055 WD40 repeat protein [G 99.8 1.4E-17 3E-22 144.9 18.7 194 123-334 212-416 (514)
148 KOG2106 Uncharacterized conser 99.8 4.4E-17 9.5E-22 143.3 21.3 215 104-348 267-527 (626)
149 KOG4328 WD40 protein [Function 99.8 1.1E-17 2.3E-22 145.4 16.8 224 104-350 210-458 (498)
150 KOG1188 WD40 repeat protein [G 99.8 1.4E-17 3E-22 139.8 16.1 191 137-350 41-250 (376)
151 KOG0290 Conserved WD40 repeat- 99.8 6E-17 1.3E-21 133.3 19.2 219 98-329 115-359 (364)
152 KOG0303 Actin-binding protein 99.8 1.5E-17 3.2E-22 142.1 15.9 199 135-347 43-254 (472)
153 KOG2919 Guanine nucleotide-bin 99.8 4.4E-17 9.6E-22 135.9 18.2 244 93-354 57-340 (406)
154 KOG0307 Vesicle coat complex C 99.8 2E-18 4.3E-23 165.2 11.4 223 102-345 88-330 (1049)
155 KOG1034 Transcriptional repres 99.8 9.2E-18 2E-22 140.2 13.8 219 105-325 116-372 (385)
156 KOG1063 RNA polymerase II elon 99.8 2.6E-17 5.6E-22 149.7 17.7 186 117-317 518-734 (764)
157 KOG1445 Tumor-specific antigen 99.8 3.4E-18 7.4E-23 154.0 11.9 201 132-344 587-800 (1012)
158 KOG4378 Nuclear protein COP1 [ 99.8 4.5E-17 9.8E-22 142.9 17.8 200 100-318 97-305 (673)
159 KOG1523 Actin-related protein 99.8 6E-17 1.3E-21 135.0 17.5 196 123-333 9-234 (361)
160 KOG1587 Cytoplasmic dynein int 99.8 8.1E-17 1.7E-21 149.7 20.1 232 105-342 223-516 (555)
161 KOG1009 Chromatin assembly com 99.8 2.8E-17 6.2E-22 140.9 15.3 200 124-325 13-249 (434)
162 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 7.7E-16 1.7E-20 136.7 25.4 188 136-351 1-196 (300)
163 KOG1007 WD repeat protein TSSC 99.8 3.4E-17 7.3E-22 134.6 15.0 209 118-344 57-291 (370)
164 KOG1310 WD40 repeat protein [G 99.7 2.1E-17 4.6E-22 146.7 14.2 219 117-350 43-311 (758)
165 KOG2048 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 141.0 22.6 207 100-317 86-302 (691)
166 KOG2106 Uncharacterized conser 99.7 8.3E-16 1.8E-20 135.3 22.6 205 124-345 246-480 (626)
167 KOG2919 Guanine nucleotide-bin 99.7 1.3E-16 2.7E-21 133.2 16.6 212 100-329 129-363 (406)
168 KOG1273 WD40 repeat protein [G 99.7 1.6E-16 3.6E-21 132.1 17.1 228 92-342 30-322 (405)
169 KOG0649 WD40 repeat protein [G 99.7 3.5E-16 7.6E-21 125.8 18.3 205 126-347 12-240 (325)
170 KOG0642 Cell-cycle nuclear pro 99.7 6.6E-17 1.4E-21 144.0 15.4 221 119-353 289-572 (577)
171 PRK01742 tolB translocation pr 99.7 4.7E-16 1E-20 144.8 21.6 216 105-353 185-414 (429)
172 KOG0322 G-protein beta subunit 99.7 1.6E-16 3.5E-21 129.1 15.2 219 113-342 3-323 (323)
173 KOG0321 WD40 repeat-containing 99.7 2.9E-16 6.3E-21 141.8 18.1 232 100-344 118-393 (720)
174 KOG0771 Prolactin regulatory e 99.7 1E-16 2.2E-21 138.4 14.4 178 128-324 148-342 (398)
175 KOG2139 WD40 repeat protein [G 99.7 3.8E-15 8.3E-20 126.3 20.9 244 78-344 96-385 (445)
176 KOG1009 Chromatin assembly com 99.7 1.8E-15 3.9E-20 129.9 18.9 112 97-208 29-162 (434)
177 KOG1538 Uncharacterized conser 99.7 5.6E-15 1.2E-19 134.3 22.6 232 91-344 18-295 (1081)
178 KOG1188 WD40 repeat protein [G 99.7 7.7E-16 1.7E-20 129.5 15.6 187 99-300 45-242 (376)
179 KOG0290 Conserved WD40 repeat- 99.7 1.1E-15 2.3E-20 126.0 14.9 203 121-344 93-320 (364)
180 KOG1034 Transcriptional repres 99.7 1.8E-15 4E-20 126.6 16.4 164 119-300 33-211 (385)
181 COG2319 FOG: WD40 repeat [Gene 99.7 5.1E-14 1.1E-18 130.2 27.6 223 102-351 85-323 (466)
182 KOG2110 Uncharacterized conser 99.7 6.7E-14 1.4E-18 119.1 24.7 158 123-300 86-248 (391)
183 PRK03629 tolB translocation pr 99.7 5.5E-14 1.2E-18 130.7 26.5 211 116-353 190-416 (429)
184 PF08662 eIF2A: Eukaryotic tra 99.7 2.2E-14 4.8E-19 118.2 20.6 157 173-350 9-186 (194)
185 PRK05137 tolB translocation pr 99.7 7.4E-14 1.6E-18 130.5 26.3 209 114-345 191-415 (435)
186 PRK11028 6-phosphogluconolacto 99.7 1.6E-13 3.4E-18 123.9 27.6 230 103-354 11-270 (330)
187 KOG2394 WD40 protein DMR-N9 [G 99.7 1.8E-15 3.8E-20 134.3 14.3 181 134-316 183-384 (636)
188 KOG2110 Uncharacterized conser 99.7 6.2E-14 1.3E-18 119.3 22.8 210 104-342 26-248 (391)
189 KOG1524 WD40 repeat-containing 99.7 3.3E-15 7.2E-20 132.5 15.7 179 117-325 97-275 (737)
190 KOG1963 WD40 repeat protein [G 99.7 1.5E-14 3.3E-19 135.4 20.6 217 121-344 202-540 (792)
191 KOG4227 WD40 repeat protein [G 99.7 3.5E-15 7.6E-20 127.7 14.9 192 119-324 51-262 (609)
192 KOG2394 WD40 protein DMR-N9 [G 99.7 3.7E-15 8E-20 132.3 15.3 139 124-278 219-383 (636)
193 KOG1445 Tumor-specific antigen 99.6 1.9E-15 4.1E-20 136.6 13.1 202 123-346 626-848 (1012)
194 KOG1354 Serine/threonine prote 99.6 4.6E-15 1E-19 125.0 14.1 238 124-369 25-329 (433)
195 PRK04922 tolB translocation pr 99.6 1E-13 2.3E-18 129.3 24.8 203 114-342 193-411 (433)
196 KOG1523 Actin-related protein 99.6 2.4E-14 5.1E-19 119.7 17.4 207 105-324 33-267 (361)
197 KOG0642 Cell-cycle nuclear pro 99.6 6.7E-15 1.4E-19 131.4 14.1 199 100-300 312-561 (577)
198 PRK11028 6-phosphogluconolacto 99.6 2.4E-13 5.3E-18 122.6 24.0 201 124-342 79-304 (330)
199 KOG2139 WD40 repeat protein [G 99.6 6.2E-14 1.3E-18 119.0 18.2 193 124-325 98-299 (445)
200 PF08662 eIF2A: Eukaryotic tra 99.6 1E-13 2.2E-18 114.3 19.3 150 128-300 9-179 (194)
201 KOG0650 WD40 repeat nucleolar 99.6 1E-14 2.2E-19 131.1 14.1 192 121-339 518-732 (733)
202 COG2319 FOG: WD40 repeat [Gene 99.6 5.6E-13 1.2E-17 123.2 26.3 202 119-346 60-275 (466)
203 KOG0644 Uncharacterized conser 99.6 1.3E-15 2.8E-20 141.5 7.5 213 118-360 184-401 (1113)
204 PRK02889 tolB translocation pr 99.6 3E-13 6.6E-18 125.9 23.3 189 114-325 185-389 (427)
205 KOG1538 Uncharacterized conser 99.6 1.9E-13 4.1E-18 124.5 19.9 202 126-333 14-250 (1081)
206 KOG0771 Prolactin regulatory e 99.6 3.1E-14 6.7E-19 123.1 13.8 188 99-300 161-354 (398)
207 KOG1524 WD40 repeat-containing 99.6 6.8E-14 1.5E-18 124.4 16.0 171 137-331 76-251 (737)
208 KOG0649 WD40 repeat protein [G 99.6 7.5E-13 1.6E-17 106.8 18.6 188 120-332 58-271 (325)
209 KOG0322 G-protein beta subunit 99.6 3E-14 6.4E-19 116.1 10.2 162 123-299 149-322 (323)
210 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.6E-19 126.1 8.7 197 124-350 129-331 (545)
211 KOG1517 Guanine nucleotide bin 99.5 1.1E-12 2.3E-17 125.3 20.8 210 122-343 1062-1288(1387)
212 TIGR02800 propeller_TolB tol-p 99.5 7.2E-12 1.6E-16 116.9 26.2 189 114-325 179-383 (417)
213 KOG1272 WD40-repeat-containing 99.5 1.5E-14 3.2E-19 126.4 6.8 187 122-332 168-359 (545)
214 KOG1963 WD40 repeat protein [G 99.5 7.8E-12 1.7E-16 117.5 24.5 238 93-353 24-386 (792)
215 KOG2111 Uncharacterized conser 99.5 1.5E-11 3.3E-16 103.0 23.6 176 105-300 76-256 (346)
216 PRK04792 tolB translocation pr 99.5 1.7E-11 3.8E-16 114.6 25.4 208 116-350 209-432 (448)
217 PRK00178 tolB translocation pr 99.5 1.8E-11 4E-16 114.5 25.7 189 114-325 188-392 (430)
218 KOG4497 Uncharacterized conser 99.5 1.5E-13 3.2E-18 115.5 10.2 227 91-351 14-249 (447)
219 KOG3881 Uncharacterized conser 99.5 2.6E-12 5.6E-17 110.3 17.1 208 123-348 104-326 (412)
220 KOG1517 Guanine nucleotide bin 99.5 3.5E-12 7.6E-17 121.9 19.7 220 100-342 1129-1381(1387)
221 KOG1240 Protein kinase contain 99.5 5.8E-12 1.2E-16 122.2 21.3 220 119-350 1043-1281(1431)
222 PRK01742 tolB translocation pr 99.5 1.5E-12 3.3E-17 121.3 17.3 170 145-346 183-365 (429)
223 KOG2321 WD40 repeat protein [G 99.5 3.5E-12 7.6E-17 114.5 17.9 205 122-350 49-310 (703)
224 PF02239 Cytochrom_D1: Cytochr 99.5 8.4E-11 1.8E-15 106.5 26.6 222 118-351 30-356 (369)
225 KOG0644 Uncharacterized conser 99.5 1.5E-13 3.2E-18 128.1 8.3 218 100-324 208-456 (1113)
226 KOG1310 WD40 repeat protein [G 99.5 2.7E-13 5.9E-18 121.0 9.6 154 165-333 46-229 (758)
227 KOG4227 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 105.7 18.7 232 93-341 64-393 (609)
228 PRK01029 tolB translocation pr 99.4 4.4E-11 9.6E-16 111.0 23.4 213 115-348 175-409 (428)
229 PRK03629 tolB translocation pr 99.4 2.5E-11 5.5E-16 113.0 21.4 174 119-316 237-427 (429)
230 KOG2111 Uncharacterized conser 99.4 5.8E-11 1.3E-15 99.6 20.8 215 100-342 22-256 (346)
231 KOG1334 WD40 repeat protein [G 99.4 1.2E-12 2.7E-17 115.2 11.2 200 118-339 136-363 (559)
232 KOG3881 Uncharacterized conser 99.4 2.2E-11 4.8E-16 104.7 16.5 177 125-317 149-342 (412)
233 KOG2315 Predicted translation 99.4 2.9E-10 6.2E-15 102.3 23.8 112 227-343 270-391 (566)
234 PRK05137 tolB translocation pr 99.4 1E-10 2.3E-15 109.4 22.2 172 146-343 182-367 (435)
235 KOG0974 WD-repeat protein WDR6 99.4 2.3E-11 4.9E-16 116.4 17.7 209 124-357 87-303 (967)
236 PRK02889 tolB translocation pr 99.4 6.1E-11 1.3E-15 110.5 19.4 175 146-346 176-364 (427)
237 KOG4547 WD40 repeat-containing 99.4 9.1E-11 2E-15 106.1 19.6 188 134-343 3-221 (541)
238 KOG0280 Uncharacterized conser 99.4 5E-11 1.1E-15 98.9 16.5 187 124-324 69-273 (339)
239 PRK04922 tolB translocation pr 99.3 2.3E-10 5E-15 107.0 21.1 174 119-316 242-432 (433)
240 PF10282 Lactonase: Lactonase, 99.3 6.2E-09 1.3E-13 94.3 29.8 203 124-345 86-327 (345)
241 PF02239 Cytochrom_D1: Cytochr 99.3 1.7E-09 3.8E-14 98.0 25.0 187 137-349 6-209 (369)
242 KOG1587 Cytoplasmic dynein int 99.3 1.1E-10 2.4E-15 109.1 17.4 180 146-344 222-474 (555)
243 KOG4497 Uncharacterized conser 99.3 4.9E-10 1.1E-14 94.6 19.3 226 106-342 73-391 (447)
244 KOG0974 WD-repeat protein WDR6 99.3 5.1E-11 1.1E-15 114.1 15.1 148 131-300 140-288 (967)
245 COG5170 CDC55 Serine/threonine 99.3 1.8E-11 3.9E-16 102.4 10.2 238 124-369 26-337 (460)
246 KOG0280 Uncharacterized conser 99.3 2.9E-10 6.4E-15 94.5 15.7 198 127-345 124-336 (339)
247 KOG2321 WD40 repeat protein [G 99.3 2.4E-10 5.2E-15 103.0 15.6 177 109-303 160-346 (703)
248 COG4946 Uncharacterized protei 99.3 3.4E-09 7.3E-14 93.7 22.3 196 132-352 327-533 (668)
249 TIGR02800 propeller_TolB tol-p 99.3 1.5E-09 3.3E-14 101.3 21.9 172 147-344 171-356 (417)
250 PF10282 Lactonase: Lactonase, 99.2 4.1E-08 8.8E-13 89.0 29.2 209 124-341 36-274 (345)
251 COG2706 3-carboxymuconate cycl 99.2 5.5E-08 1.2E-12 83.7 27.8 217 103-325 15-262 (346)
252 COG2706 3-carboxymuconate cycl 99.2 3.4E-08 7.5E-13 84.9 25.1 197 126-341 90-320 (346)
253 KOG1409 Uncharacterized conser 99.2 2.4E-09 5.1E-14 91.0 17.8 200 100-300 42-270 (404)
254 PRK04043 tolB translocation pr 99.2 2E-08 4.3E-13 92.9 25.5 174 126-325 189-386 (419)
255 KOG3914 WD repeat protein WDR4 99.2 4.2E-10 9E-15 97.4 13.3 158 126-302 64-225 (390)
256 PRK01029 tolB translocation pr 99.2 3.8E-09 8.2E-14 98.2 20.4 180 117-317 223-425 (428)
257 PRK00178 tolB translocation pr 99.2 7.8E-09 1.7E-13 96.8 22.4 173 147-345 180-366 (430)
258 KOG1064 RAVE (regulator of V-A 99.1 3.7E-10 8E-15 113.6 12.3 212 118-364 2202-2420(2439)
259 KOG1334 WD40 repeat protein [G 99.1 1.9E-09 4.2E-14 95.4 14.8 236 100-341 160-465 (559)
260 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.2E-07 2.5E-12 84.5 25.9 211 132-350 53-338 (352)
261 KOG1354 Serine/threonine prote 99.1 1.6E-09 3.4E-14 92.1 13.1 172 121-299 161-358 (433)
262 KOG4547 WD40 repeat-containing 99.1 5.4E-09 1.2E-13 94.8 16.8 144 137-300 71-220 (541)
263 KOG1240 Protein kinase contain 99.1 2.3E-08 5E-13 97.8 22.0 188 100-301 1067-1274(1431)
264 PRK04792 tolB translocation pr 99.1 1.7E-08 3.7E-13 94.6 20.8 156 147-325 199-368 (448)
265 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.8E-12 96.9 26.3 211 126-347 625-893 (1057)
266 KOG2041 WD40 repeat protein [G 99.0 3.5E-09 7.6E-14 98.0 13.4 188 124-325 14-277 (1189)
267 COG5354 Uncharacterized protei 99.0 2.3E-08 4.9E-13 89.4 17.9 221 116-347 24-400 (561)
268 PF15492 Nbas_N: Neuroblastoma 99.0 1.3E-07 2.8E-12 79.0 20.6 206 129-352 2-269 (282)
269 KOG2041 WD40 repeat protein [G 99.0 3.1E-08 6.6E-13 92.0 18.4 211 118-331 65-333 (1189)
270 KOG0309 Conserved WD40 repeat- 99.0 5.9E-09 1.3E-13 96.9 10.9 234 106-354 48-299 (1081)
271 KOG1409 Uncharacterized conser 98.9 4.9E-08 1.1E-12 83.2 15.1 208 118-347 18-275 (404)
272 KOG3914 WD repeat protein WDR4 98.9 1.2E-08 2.6E-13 88.6 11.2 173 171-365 64-246 (390)
273 COG4946 Uncharacterized protei 98.9 2.5E-07 5.5E-12 82.2 19.4 151 117-289 352-507 (668)
274 KOG2314 Translation initiation 98.9 2.6E-07 5.7E-12 83.5 19.2 197 125-325 250-556 (698)
275 KOG1064 RAVE (regulator of V-A 98.9 6.8E-09 1.5E-13 104.9 9.8 171 100-302 2226-2400(2439)
276 KOG4532 WD40-like repeat conta 98.9 7.3E-07 1.6E-11 73.8 19.7 165 136-319 84-263 (344)
277 PF04762 IKI3: IKI3 family; I 98.9 7.4E-07 1.6E-11 89.9 23.5 204 122-332 73-330 (928)
278 KOG4190 Uncharacterized conser 98.8 6.6E-09 1.4E-13 93.6 7.3 171 118-303 729-909 (1034)
279 KOG2315 Predicted translation 98.8 4.6E-07 1E-11 82.1 17.9 163 129-317 222-411 (566)
280 KOG4714 Nucleoporin [Nuclear s 98.8 7E-09 1.5E-13 85.0 5.6 165 118-300 83-254 (319)
281 PLN02919 haloacid dehalogenase 98.8 9.6E-07 2.1E-11 90.6 21.6 175 126-301 684-889 (1057)
282 KOG4532 WD40-like repeat conta 98.8 1.6E-06 3.5E-11 71.7 18.3 149 127-288 161-320 (344)
283 PF00400 WD40: WD domain, G-be 98.8 4.7E-08 1E-12 57.8 6.9 39 259-298 1-39 (39)
284 PRK04043 tolB translocation pr 98.8 1.5E-06 3.2E-11 80.5 20.1 148 117-290 225-387 (419)
285 KOG2695 WD40 repeat protein [G 98.8 3.5E-08 7.6E-13 84.1 8.5 142 141-300 229-376 (425)
286 PF08450 SGL: SMP-30/Gluconola 98.8 3.8E-05 8.3E-10 66.2 27.6 196 107-324 23-243 (246)
287 KOG0309 Conserved WD40 repeat- 98.7 2.9E-08 6.3E-13 92.4 7.8 201 124-347 24-237 (1081)
288 KOG0882 Cyclophilin-related pe 98.7 9.3E-07 2E-11 78.1 14.4 219 123-350 8-313 (558)
289 KOG2314 Translation initiation 98.7 1.9E-06 4.1E-11 78.2 16.4 165 169-355 210-394 (698)
290 KOG1832 HIV-1 Vpr-binding prot 98.6 2.4E-08 5.2E-13 94.7 4.7 178 118-325 1095-1285(1516)
291 KOG2066 Vacuolar assembly/sort 98.6 9.4E-07 2E-11 83.5 15.0 176 124-342 39-233 (846)
292 PF08450 SGL: SMP-30/Gluconola 98.6 8.7E-05 1.9E-09 63.9 26.4 191 129-348 4-218 (246)
293 PF11768 DUF3312: Protein of u 98.6 1.1E-05 2.5E-10 74.2 21.3 114 171-300 207-329 (545)
294 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.5E-12 79.5 8.6 141 123-278 251-401 (425)
295 PF07433 DUF1513: Protein of u 98.6 7.2E-05 1.6E-09 64.7 23.3 205 124-350 4-255 (305)
296 PF13360 PQQ_2: PQQ-like domai 98.6 4.6E-05 1E-09 65.2 22.6 188 135-349 35-237 (238)
297 PF04762 IKI3: IKI3 family; I 98.6 2.3E-05 5E-10 79.3 23.3 195 123-341 208-455 (928)
298 PF00400 WD40: WD domain, G-be 98.5 2E-07 4.4E-12 55.0 5.0 35 118-152 5-39 (39)
299 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3.1E-10 75.7 19.2 143 133-300 80-233 (846)
300 PF15492 Nbas_N: Neuroblastoma 98.5 3.7E-05 8E-10 64.6 18.7 35 268-303 228-262 (282)
301 KOG4190 Uncharacterized conser 98.5 3.9E-07 8.4E-12 82.5 7.4 184 100-299 753-947 (1034)
302 KOG1912 WD40 repeat protein [G 98.5 8.8E-06 1.9E-10 76.8 16.3 155 124-299 15-185 (1062)
303 PF06977 SdiA-regulated: SdiA- 98.5 0.00017 3.8E-09 61.3 22.9 198 119-325 16-240 (248)
304 KOG1920 IkappaB kinase complex 98.5 3.5E-05 7.6E-10 76.4 20.8 193 124-323 68-306 (1265)
305 KOG3621 WD40 repeat-containing 98.5 7.6E-06 1.6E-10 76.5 15.5 201 123-347 32-249 (726)
306 PF07433 DUF1513: Protein of u 98.5 0.00011 2.4E-09 63.6 21.6 176 130-324 56-274 (305)
307 KOG4714 Nucleoporin [Nuclear s 98.4 1.6E-06 3.5E-11 71.4 9.5 142 180-343 100-255 (319)
308 COG5170 CDC55 Serine/threonine 98.4 1.9E-06 4.1E-11 72.8 10.1 174 121-299 169-366 (460)
309 KOG2114 Vacuolar assembly/sort 98.4 7.5E-05 1.6E-09 71.6 21.4 195 131-333 30-241 (933)
310 PF11768 DUF3312: Protein of u 98.4 5.8E-06 1.3E-10 76.0 13.6 118 126-261 207-333 (545)
311 KOG1275 PAB-dependent poly(A) 98.4 6.9E-06 1.5E-10 78.8 14.2 175 136-340 147-340 (1118)
312 COG5354 Uncharacterized protei 98.4 4.2E-05 9E-10 69.0 17.7 169 129-325 227-418 (561)
313 COG0823 TolB Periplasmic compo 98.3 4.5E-05 9.7E-10 70.5 16.5 185 118-325 186-388 (425)
314 TIGR03300 assembly_YfgL outer 98.3 0.00023 5.1E-09 65.5 21.3 196 136-354 145-350 (377)
315 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00049 1.1E-08 61.7 22.1 117 180-303 205-333 (352)
316 KOG1645 RING-finger-containing 98.3 7.3E-05 1.6E-09 65.6 16.0 80 119-202 188-269 (463)
317 KOG1832 HIV-1 Vpr-binding prot 98.2 1.5E-06 3.3E-11 82.9 5.2 167 165-363 1097-1277(1516)
318 KOG1275 PAB-dependent poly(A) 98.2 3.3E-05 7.2E-10 74.3 14.0 150 126-300 179-342 (1118)
319 PF04053 Coatomer_WDAD: Coatom 98.2 0.00027 5.8E-09 65.6 19.2 195 124-363 32-244 (443)
320 KOG1912 WD40 repeat protein [G 98.2 0.00032 7E-09 66.7 19.2 213 103-341 34-303 (1062)
321 TIGR03300 assembly_YfgL outer 98.2 0.00051 1.1E-08 63.3 20.5 140 136-302 65-210 (377)
322 KOG1008 Uncharacterized conser 98.1 8.8E-07 1.9E-11 81.7 0.3 166 117-300 95-275 (783)
323 KOG1008 Uncharacterized conser 98.0 2E-06 4.4E-11 79.3 2.2 182 124-319 56-256 (783)
324 KOG1920 IkappaB kinase complex 98.0 0.00077 1.7E-08 67.3 19.4 138 169-324 68-259 (1265)
325 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00014 3E-09 52.8 10.3 82 272-353 2-89 (111)
326 PRK02888 nitrous-oxide reducta 98.0 0.00079 1.7E-08 63.9 17.6 178 132-343 200-405 (635)
327 KOG2114 Vacuolar assembly/sort 97.9 0.0014 3E-08 63.2 18.8 168 119-300 59-243 (933)
328 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0057 1.2E-07 51.1 20.0 137 136-294 23-159 (354)
329 KOG3617 WD40 and TPR repeat-co 97.9 0.00062 1.3E-08 65.5 15.5 74 123-199 58-131 (1416)
330 PF13360 PQQ_2: PQQ-like domai 97.9 0.0037 8.1E-08 53.3 19.1 157 135-303 75-233 (238)
331 PF08553 VID27: VID27 cytoplas 97.8 0.0035 7.5E-08 61.8 19.1 146 136-299 493-646 (794)
332 COG3391 Uncharacterized conser 97.8 0.023 5.1E-07 52.3 23.7 199 125-351 74-292 (381)
333 PF08596 Lgl_C: Lethal giant l 97.8 0.0055 1.2E-07 56.2 19.2 194 121-325 83-325 (395)
334 KOG1645 RING-finger-containing 97.8 7.3E-05 1.6E-09 65.6 6.6 76 225-301 191-267 (463)
335 PRK02888 nitrous-oxide reducta 97.7 0.0022 4.8E-08 60.9 16.4 105 146-258 296-405 (635)
336 KOG3621 WD40 repeat-containing 97.7 0.00029 6.3E-09 66.3 10.2 117 169-301 33-155 (726)
337 PF08553 VID27: VID27 cytoplas 97.7 0.0037 7.9E-08 61.6 18.0 135 180-333 492-645 (794)
338 PF02897 Peptidase_S9_N: Proly 97.7 0.049 1.1E-06 50.8 27.4 158 126-300 125-309 (414)
339 COG3204 Uncharacterized protei 97.7 0.025 5.4E-07 48.4 20.2 198 120-325 81-302 (316)
340 KOG4640 Anaphase-promoting com 97.7 0.00035 7.5E-09 65.0 9.9 80 123-206 19-99 (665)
341 KOG3617 WD40 and TPR repeat-co 97.6 0.00016 3.4E-09 69.4 7.6 110 172-300 18-131 (1416)
342 COG0823 TolB Periplasmic compo 97.6 0.0017 3.6E-08 60.2 14.2 144 123-289 236-388 (425)
343 smart00320 WD40 WD40 repeats. 97.6 0.00023 5E-09 40.6 5.9 39 259-298 2-40 (40)
344 PF08596 Lgl_C: Lethal giant l 97.6 0.06 1.3E-06 49.5 23.3 212 126-352 3-300 (395)
345 PF04841 Vps16_N: Vps16, N-ter 97.6 0.064 1.4E-06 49.8 23.6 178 130-325 34-235 (410)
346 PRK11138 outer membrane biogen 97.6 0.026 5.6E-07 52.3 21.2 192 136-351 160-362 (394)
347 PF04053 Coatomer_WDAD: Coatom 97.6 0.0043 9.3E-08 57.7 15.6 132 171-331 34-169 (443)
348 KOG4640 Anaphase-promoting com 97.5 0.00057 1.2E-08 63.6 9.5 85 229-315 22-114 (665)
349 PRK13616 lipoprotein LpqB; Pro 97.5 0.015 3.3E-07 56.3 19.6 149 124-300 349-525 (591)
350 COG3391 Uncharacterized conser 97.5 0.075 1.6E-06 49.0 23.9 198 126-348 32-245 (381)
351 KOG0882 Cyclophilin-related pe 97.5 0.00039 8.5E-09 62.0 7.6 77 267-350 142-239 (558)
352 COG3386 Gluconolactonase [Carb 97.4 0.057 1.2E-06 47.8 20.3 181 124-324 65-273 (307)
353 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.02 4.3E-07 41.7 14.0 100 127-252 2-109 (111)
354 KOG2395 Protein involved in va 97.3 0.019 4.1E-07 52.9 16.2 137 176-331 340-496 (644)
355 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.037 8E-07 50.5 18.4 199 124-323 42-297 (353)
356 PRK11138 outer membrane biogen 97.3 0.021 4.5E-07 52.9 17.1 137 136-299 256-393 (394)
357 smart00320 WD40 WD40 repeats. 97.3 0.00044 9.6E-09 39.3 3.8 33 120-152 8-40 (40)
358 PF06433 Me-amine-dh_H: Methyl 97.3 0.075 1.6E-06 47.0 18.8 197 97-302 100-322 (342)
359 KOG4499 Ca2+-binding protein R 97.3 0.037 8.1E-07 45.7 15.6 153 124-289 108-273 (310)
360 PF03178 CPSF_A: CPSF A subuni 97.2 0.12 2.6E-06 46.4 20.6 170 146-342 2-202 (321)
361 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.035 7.7E-07 46.6 15.1 102 181-301 23-124 (354)
362 COG3386 Gluconolactonase [Carb 97.2 0.14 2.9E-06 45.5 19.9 196 131-353 31-253 (307)
363 PF06433 Me-amine-dh_H: Methyl 97.1 0.15 3.3E-06 45.2 19.4 81 128-208 39-135 (342)
364 PF04841 Vps16_N: Vps16, N-ter 97.1 0.22 4.9E-06 46.3 23.6 179 125-319 81-272 (410)
365 KOG2444 WD40 repeat protein [G 97.1 0.0011 2.3E-08 54.4 5.0 107 181-303 70-180 (238)
366 PF06977 SdiA-regulated: SdiA- 97.0 0.17 3.7E-06 43.3 19.4 143 165-324 17-188 (248)
367 PF03178 CPSF_A: CPSF A subuni 97.0 0.07 1.5E-06 47.9 17.1 143 136-300 42-202 (321)
368 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0035 7.6E-08 38.1 5.7 34 227-261 11-44 (47)
369 KOG2395 Protein involved in va 97.0 0.022 4.7E-07 52.5 12.9 150 134-300 343-500 (644)
370 PF14870 PSII_BNR: Photosynthe 96.9 0.057 1.2E-06 47.6 15.2 156 122-297 142-301 (302)
371 PF10647 Gmad1: Lipoprotein Lp 96.9 0.1 2.2E-06 45.1 16.6 147 126-292 25-187 (253)
372 PF00780 CNH: CNH domain; Int 96.9 0.24 5.2E-06 43.3 23.4 153 134-300 5-165 (275)
373 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0039 8.4E-08 37.9 5.5 32 123-154 10-41 (47)
374 KOG2079 Vacuolar assembly/sort 96.9 0.0044 9.6E-08 61.4 8.7 102 180-299 98-202 (1206)
375 KOG2079 Vacuolar assembly/sort 96.9 0.0048 1E-07 61.2 8.5 101 135-250 98-198 (1206)
376 COG3490 Uncharacterized protei 96.9 0.089 1.9E-06 44.9 14.7 158 131-303 120-313 (366)
377 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.023 5E-07 51.8 12.5 103 178-299 1-130 (353)
378 PF14583 Pectate_lyase22: Olig 96.8 0.37 7.9E-06 43.6 19.2 172 131-322 42-253 (386)
379 PF05694 SBP56: 56kDa selenium 96.7 0.5 1.1E-05 43.3 19.9 193 135-345 86-345 (461)
380 COG3490 Uncharacterized protei 96.5 0.45 9.7E-06 40.8 17.5 204 124-349 67-317 (366)
381 PHA02713 hypothetical protein; 96.5 0.34 7.4E-06 47.1 18.2 197 135-354 303-552 (557)
382 PF15390 DUF4613: Domain of un 96.4 0.11 2.4E-06 48.8 13.7 101 229-330 58-179 (671)
383 cd00216 PQQ_DH Dehydrogenases 96.4 0.67 1.5E-05 44.3 19.7 150 130-303 222-427 (488)
384 PF10647 Gmad1: Lipoprotein Lp 96.4 0.59 1.3E-05 40.4 18.0 134 171-324 25-183 (253)
385 PF14870 PSII_BNR: Photosynthe 96.3 0.67 1.5E-05 40.9 19.2 178 126-327 105-296 (302)
386 KOG1916 Nuclear protein, conta 96.3 0.0022 4.8E-08 62.3 2.4 177 118-303 126-326 (1283)
387 cd00216 PQQ_DH Dehydrogenases 96.3 1.2 2.5E-05 42.7 23.0 116 144-266 173-328 (488)
388 TIGR02604 Piru_Ver_Nterm putat 96.1 0.43 9.2E-06 43.8 15.9 154 125-289 14-202 (367)
389 KOG2444 WD40 repeat protein [G 96.0 0.023 5.1E-07 46.7 6.4 69 136-205 70-138 (238)
390 PF12234 Rav1p_C: RAVE protein 96.0 0.44 9.5E-06 46.2 15.8 107 230-337 32-158 (631)
391 PF14583 Pectate_lyase22: Olig 95.9 1 2.2E-05 40.8 16.7 112 115-244 178-299 (386)
392 COG3204 Uncharacterized protei 95.8 1.1 2.5E-05 38.7 15.9 160 148-324 65-250 (316)
393 PRK13616 lipoprotein LpqB; Pro 95.8 0.12 2.7E-06 50.2 11.4 97 229-329 351-470 (591)
394 PRK13684 Ycf48-like protein; P 95.7 1.6 3.4E-05 39.5 17.5 155 124-298 172-329 (334)
395 PF15390 DUF4613: Domain of un 95.7 0.68 1.5E-05 43.8 15.0 153 124-299 19-185 (671)
396 PF05096 Glu_cyclase_2: Glutam 95.6 1.3 2.8E-05 38.0 21.3 176 125-324 45-248 (264)
397 PF10313 DUF2415: Uncharacteri 95.5 0.054 1.2E-06 31.9 4.8 32 270-301 1-34 (43)
398 KOG3630 Nuclear pore complex, 95.4 0.24 5.2E-06 50.1 11.9 148 171-325 102-262 (1405)
399 PF12234 Rav1p_C: RAVE protein 95.4 0.49 1.1E-05 45.9 13.6 122 127-257 32-156 (631)
400 KOG4441 Proteins containing BT 95.4 0.88 1.9E-05 44.3 15.6 151 128-301 326-500 (571)
401 PF00780 CNH: CNH domain; Int 95.3 1.7 3.7E-05 37.8 17.3 124 180-325 6-155 (275)
402 PHA03098 kelch-like protein; P 95.3 1.3 2.8E-05 43.0 16.8 146 134-301 293-465 (534)
403 PHA02713 hypothetical protein; 95.3 0.32 7E-06 47.2 12.4 145 135-301 351-534 (557)
404 PF08728 CRT10: CRT10; InterP 95.1 1.6 3.5E-05 42.9 16.4 164 136-300 49-246 (717)
405 PF14761 HPS3_N: Hermansky-Pud 95.0 1.7 3.7E-05 35.9 14.2 102 182-300 29-163 (215)
406 PF14727 PHTB1_N: PTHB1 N-term 95.0 3 6.5E-05 38.7 23.4 150 135-298 36-202 (418)
407 PF10168 Nup88: Nuclear pore c 95.0 1.7 3.7E-05 43.4 16.4 84 170-259 85-181 (717)
408 PF05694 SBP56: 56kDa selenium 95.0 3 6.5E-05 38.4 20.5 182 129-325 134-392 (461)
409 KOG2377 Uncharacterized conser 94.8 1.8 3.9E-05 39.8 14.6 95 228-325 67-172 (657)
410 PF10168 Nup88: Nuclear pore c 94.8 4.9 0.00011 40.2 19.6 78 124-202 84-182 (717)
411 PF13449 Phytase-like: Esteras 94.4 3.7 8E-05 36.9 18.4 159 124-287 19-231 (326)
412 TIGR02604 Piru_Ver_Nterm putat 94.3 2 4.3E-05 39.4 14.5 136 171-324 15-201 (367)
413 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 5.4 0.00012 38.6 21.7 111 145-262 180-338 (527)
414 KOG1897 Damage-specific DNA bi 94.3 6.8 0.00015 39.7 20.9 182 124-324 714-931 (1096)
415 KOG3630 Nuclear pore complex, 94.2 0.41 8.8E-06 48.6 10.1 145 125-287 101-260 (1405)
416 PF10313 DUF2415: Uncharacteri 94.2 0.28 6E-06 29.0 5.5 31 229-259 2-35 (43)
417 PLN00033 photosystem II stabil 94.2 4.6 0.0001 37.4 17.2 98 228-329 281-393 (398)
418 PHA02790 Kelch-like protein; P 94.0 4.2 9.2E-05 38.8 16.6 141 135-300 271-423 (480)
419 KOG4460 Nuclear pore complex, 94.0 1.6 3.4E-05 40.9 12.6 88 171-263 105-204 (741)
420 PF07569 Hira: TUP1-like enhan 93.9 0.44 9.6E-06 40.1 8.6 62 280-341 20-101 (219)
421 PF07995 GSDH: Glucose / Sorbo 93.8 1.4 3E-05 39.8 12.1 53 126-180 3-59 (331)
422 PF02897 Peptidase_S9_N: Proly 93.6 6.1 0.00013 36.8 24.3 200 129-346 174-408 (414)
423 PRK10115 protease 2; Provision 93.6 4.3 9.3E-05 40.7 16.2 112 170-299 127-254 (686)
424 COG4257 Vgb Streptogramin lyas 93.6 4.4 9.5E-05 34.9 16.8 198 124-341 61-268 (353)
425 PF05096 Glu_cyclase_2: Glutam 93.5 4.6 9.9E-05 34.8 19.1 155 169-351 44-212 (264)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 1.3 2.7E-05 41.1 11.1 83 118-203 301-402 (415)
427 PLN00033 photosystem II stabil 93.3 6.9 0.00015 36.2 18.8 154 126-297 240-396 (398)
428 PF07569 Hira: TUP1-like enhan 93.2 0.9 2E-05 38.2 9.3 64 235-300 18-95 (219)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 93.0 1.1 2.4E-05 41.4 10.2 89 228-320 308-414 (415)
430 KOG4441 Proteins containing BT 92.9 5.8 0.00013 38.8 15.6 189 133-343 282-507 (571)
431 PF14269 Arylsulfotran_2: Aryl 92.9 6.5 0.00014 34.9 18.3 127 172-299 59-219 (299)
432 PRK10115 protease 2; Provision 92.9 11 0.00025 37.7 25.0 72 125-201 127-209 (686)
433 KOG2247 WD40 repeat-containing 92.8 0.019 4E-07 52.5 -1.4 144 125-291 35-179 (615)
434 TIGR03606 non_repeat_PQQ dehyd 92.7 5.6 0.00012 37.4 14.4 58 124-181 29-90 (454)
435 KOG2377 Uncharacterized conser 92.6 3.4 7.3E-05 38.1 12.3 144 128-287 26-170 (657)
436 PRK13684 Ycf48-like protein; P 92.6 7.7 0.00017 35.0 19.8 143 169-333 172-329 (334)
437 KOG1916 Nuclear protein, conta 92.1 0.21 4.5E-06 49.3 4.5 154 127-300 186-374 (1283)
438 PHA03098 kelch-like protein; P 91.9 2.5 5.3E-05 41.0 11.9 67 135-204 342-419 (534)
439 PF07995 GSDH: Glucose / Sorbo 91.2 11 0.00024 34.0 17.6 108 171-291 3-134 (331)
440 PF14781 BBS2_N: Ciliary BBSom 90.9 5.8 0.00013 30.2 14.3 106 234-341 5-133 (136)
441 PHA02790 Kelch-like protein; P 90.5 10 0.00022 36.2 14.3 133 134-291 317-456 (480)
442 COG5167 VID27 Protein involved 90.4 6.2 0.00014 37.0 11.8 132 178-329 476-626 (776)
443 KOG1900 Nuclear pore complex, 90.2 3.6 7.7E-05 42.9 11.0 160 98-258 93-273 (1311)
444 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.9 20 0.00043 34.8 21.7 115 136-266 69-198 (527)
445 PF11715 Nup160: Nucleoporin N 89.9 2.3 4.9E-05 41.4 9.5 87 179-265 156-256 (547)
446 PF07250 Glyoxal_oxid_N: Glyox 89.4 4.3 9.3E-05 34.6 9.6 131 194-350 49-205 (243)
447 KOG2280 Vacuolar assembly/sort 89.3 14 0.0003 36.5 13.6 51 146-201 64-114 (829)
448 PF05935 Arylsulfotrans: Aryls 89.0 22 0.00047 34.0 17.1 135 130-268 153-312 (477)
449 PF12657 TFIIIC_delta: Transcr 89.0 3.6 7.9E-05 33.1 8.6 30 229-258 87-122 (173)
450 PF08728 CRT10: CRT10; InterP 88.9 6.3 0.00014 39.0 11.3 119 125-256 101-245 (717)
451 TIGR02276 beta_rpt_yvtn 40-res 88.8 3.1 6.8E-05 24.0 6.4 40 237-277 1-41 (42)
452 PF10214 Rrn6: RNA polymerase 88.8 30 0.00065 35.3 19.4 172 122-300 77-276 (765)
453 TIGR03118 PEPCTERM_chp_1 conse 88.7 16 0.00035 32.1 16.9 80 121-200 19-119 (336)
454 KOG4460 Nuclear pore complex, 88.3 15 0.00032 34.7 12.7 73 229-301 105-199 (741)
455 TIGR03606 non_repeat_PQQ dehyd 88.3 23 0.0005 33.4 14.4 109 171-291 31-166 (454)
456 PF11715 Nup160: Nucleoporin N 87.8 3.6 7.9E-05 40.0 9.3 74 134-207 156-256 (547)
457 PF14781 BBS2_N: Ciliary BBSom 87.3 11 0.00024 28.7 13.8 117 130-265 4-133 (136)
458 PF13449 Phytase-like: Esteras 87.0 23 0.00049 31.9 17.2 148 171-325 21-233 (326)
459 COG3823 Glutamine cyclotransfe 86.1 18 0.00039 29.9 13.4 103 135-259 55-160 (262)
460 COG5167 VID27 Protein involved 85.5 21 0.00046 33.7 12.0 147 134-300 477-632 (776)
461 PF10214 Rrn6: RNA polymerase 85.5 46 0.00099 34.0 16.9 118 124-258 145-277 (765)
462 TIGR03032 conserved hypothetic 85.0 18 0.0004 32.0 10.9 70 150-245 189-258 (335)
463 PF12768 Rax2: Cortical protei 84.8 24 0.00051 31.0 11.8 93 191-300 16-123 (281)
464 KOG2247 WD40 repeat-containing 84.7 0.091 2E-06 48.2 -3.1 134 172-324 37-177 (615)
465 COG4590 ABC-type uncharacteriz 84.1 1.3 2.8E-05 40.7 3.7 152 169-332 220-383 (733)
466 KOG2280 Vacuolar assembly/sort 84.0 48 0.001 33.0 16.8 175 125-318 84-271 (829)
467 PLN02193 nitrile-specifier pro 83.4 43 0.00092 32.0 17.5 138 135-290 228-386 (470)
468 KOG1983 Tomosyn and related SN 83.3 24 0.00051 37.1 12.8 34 123-156 34-67 (993)
469 KOG1900 Nuclear pore complex, 83.1 16 0.00035 38.4 11.2 157 130-300 84-272 (1311)
470 KOG4499 Ca2+-binding protein R 82.6 29 0.00062 29.4 15.8 114 228-351 109-250 (310)
471 PF12768 Rax2: Cortical protei 81.3 37 0.0008 29.8 12.9 118 146-278 16-145 (281)
472 TIGR03548 mutarot_permut cycli 81.0 41 0.00088 30.1 16.2 109 135-260 72-197 (323)
473 PF14761 HPS3_N: Hermansky-Pud 80.9 31 0.00068 28.7 14.1 56 240-297 29-92 (215)
474 TIGR03074 PQQ_membr_DH membran 80.9 69 0.0015 32.7 18.5 163 136-302 260-479 (764)
475 PF07676 PD40: WD40-like Beta 79.8 6.5 0.00014 22.3 4.6 29 123-151 7-38 (39)
476 PF08801 Nucleoporin_N: Nup133 79.6 30 0.00065 32.4 11.4 31 229-259 191-221 (422)
477 PF03088 Str_synth: Strictosid 79.5 19 0.00041 25.3 8.0 40 144-187 35-74 (89)
478 TIGR02276 beta_rpt_yvtn 40-res 79.4 7 0.00015 22.4 4.8 28 179-206 1-29 (42)
479 COG5276 Uncharacterized conser 79.4 43 0.00093 29.4 18.7 207 114-350 31-249 (370)
480 TIGR03118 PEPCTERM_chp_1 conse 79.1 45 0.00098 29.5 13.4 121 171-300 24-170 (336)
481 COG4257 Vgb Streptogramin lyas 79.1 42 0.00092 29.1 17.8 187 104-319 81-288 (353)
482 KOG2006 WD40 repeat protein [G 78.5 8.7 0.00019 39.1 7.5 77 126-202 150-228 (1023)
483 PF12657 TFIIIC_delta: Transcr 78.4 17 0.00038 29.1 8.2 28 229-258 6-33 (173)
484 TIGR03074 PQQ_membr_DH membran 78.2 84 0.0018 32.1 23.3 127 136-266 194-353 (764)
485 KOG3616 Selective LIM binding 77.9 5.3 0.00012 39.2 5.7 67 229-299 16-82 (1636)
486 COG1770 PtrB Protease II [Amin 77.9 75 0.0016 31.3 21.3 202 126-348 130-354 (682)
487 COG4590 ABC-type uncharacteriz 77.2 16 0.00035 33.8 8.2 165 121-300 217-386 (733)
488 PF07250 Glyoxal_oxid_N: Glyox 76.7 47 0.001 28.4 12.5 127 131-269 73-209 (243)
489 PF01436 NHL: NHL repeat; Int 75.5 9.1 0.0002 20.1 4.0 26 126-151 3-28 (28)
490 PF07676 PD40: WD40-like Beta 74.9 13 0.00028 21.0 5.7 29 268-297 7-38 (39)
491 PF03088 Str_synth: Strictosid 74.9 26 0.00057 24.6 7.7 50 188-254 34-84 (89)
492 KOG4659 Uncharacterized conser 74.1 1.3E+02 0.0029 32.3 15.4 17 231-247 596-612 (1899)
493 smart00564 PQQ beta-propeller 73.9 10 0.00022 20.4 4.2 24 241-264 8-31 (33)
494 PLN02193 nitrile-specifier pro 70.9 99 0.0021 29.5 18.2 107 180-301 228-352 (470)
495 KOG3616 Selective LIM binding 70.3 6.9 0.00015 38.5 4.5 51 170-220 15-65 (1636)
496 KOG1896 mRNA cleavage and poly 70.0 1.5E+02 0.0033 31.5 13.6 143 137-300 1047-1213(1366)
497 PRK13613 lipoprotein LpqB; Pro 69.7 1.2E+02 0.0026 30.0 15.6 136 171-324 364-524 (599)
498 COG1520 FOG: WD40-like repeat 69.4 92 0.002 28.5 19.7 114 134-266 67-180 (370)
499 PF10395 Utp8: Utp8 family; I 67.5 1.4E+02 0.003 29.8 21.4 233 99-350 35-313 (670)
500 COG5290 IkappaB kinase complex 67.4 74 0.0016 32.1 10.5 215 106-339 93-328 (1243)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=282.60 Aligned_cols=228 Identities=19% Similarity=0.239 Sum_probs=211.0
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
.+-+....+|.....+....|.+|...|.++.|+|. +..+|+|+.||++++|++.+...+.. +.+|...|..++|
T Consensus 193 ~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~---l~gH~~RVs~Vaf 269 (459)
T KOG0272|consen 193 GSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD---LEGHLARVSRVAF 269 (459)
T ss_pred eecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh---hhcchhhheeeee
Confidence 555567788998888888999999999999999996 56899999999999999998766655 7789899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
+|+|++|++++.|.+-++||+.++....... ||...|.+++|+|||.++++|+.|..-+|||++
T Consensus 270 HPsG~~L~TasfD~tWRlWD~~tk~ElL~QE----------------GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR 333 (459)
T KOG0272|consen 270 HPSGKFLGTASFDSTWRLWDLETKSELLLQE----------------GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR 333 (459)
T ss_pred cCCCceeeecccccchhhcccccchhhHhhc----------------ccccccceeEecCCCceeeccCccchhheeecc
Confidence 9999999999999999999999987654444 899999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEecc-CCCeEEEEeeeeEE
Q 017421 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNP-CNKYLIIYLILVIS 330 (372)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~~ 330 (372)
++.++..+.+|..+|.+|+|+ |+|..||||+.|++++|||++ ++..|.+-|+.+.|+| .|.+|++++
T Consensus 334 tgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas----- 407 (459)
T KOG0272|consen 334 TGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS----- 407 (459)
T ss_pred cCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc-----
Confidence 999999999999999999999 999999999999999999998 5668999999999999 688999888
Q ss_pred EeeceEEEeecccceEEEEEeee
Q 017421 331 IYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 331 ~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
||+++++|.-.++++++++.||
T Consensus 408 -yD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 408 -YDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred -cCcceeeecCCCcccchhhcCC
Confidence 9999999999999999999999
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-38 Score=265.49 Aligned_cols=256 Identities=21% Similarity=0.253 Sum_probs=222.5
Q ss_pred CCCccccceeeeecccC-----ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCC
Q 017421 75 KRHLPVSTVKMLAGREG-----NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS 146 (372)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 146 (372)
+.+...+....+.||.. .|++.+. ..++|.+.++|+...........+|...|.|++|+|||+.||+|+.||
T Consensus 100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred cccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 33334556667778877 3677553 378888999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCeEEEEeeecccCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (372)
Q Consensus 147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
+|++||..+++.+-. .+.+|...|++++|.| ..++|++++.||.|+|||+..+.+.....
T Consensus 180 ~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls------------- 244 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS------------- 244 (480)
T ss_pred eEEEecCCCCCcccc--cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-------------
Confidence 999999999876554 4668999999999987 57799999999999999999988765554
Q ss_pred CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe----------CCCC---------
Q 017421 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG----------DESG--------- 282 (372)
Q Consensus 222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------p~~~--------- 282 (372)
||+.+|+|+.|--+| +|++|+.|++|++|+...|.+...+.+|...|+.++.+ .|.+
T Consensus 245 ---gHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 245 ---GHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ---cCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 799999999997654 89999999999999999999999999999999998876 1223
Q ss_pred ----------------CEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 283 ----------------HLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 283 ----------------~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
..|++|+.|.++.+|+.. .+.+|..-|+.+.||||++++|+++ ||..|+||
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS------FDkSVkLW 394 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS------FDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee------cccceeee
Confidence 359999999999999975 3448999999999999999999998 89999999
Q ss_pred ecccceEEEEEeeeEE
Q 017421 340 NYFLLRTFYSFMVHIL 355 (372)
Q Consensus 340 ~~~~~~~~~~~~~h~~ 355 (372)
+-.+|+-+.+|.||+.
T Consensus 395 ~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 395 DGRTGKFLASFRGHVA 410 (480)
T ss_pred eCCCcchhhhhhhccc
Confidence 9999999999999963
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=247.66 Aligned_cols=284 Identities=17% Similarity=0.216 Sum_probs=241.2
Q ss_pred ccchhHHHHHHh-cccc-------CCccccccccCCCCCccccceeeeecccCcc-----CCCCc---cccCCceeEeee
Q 017421 47 LSALDHEIAQLT-KLKS-------EPKEHFSKEVPGKRHLPVSTVKMLAGREGNY-----SGRGR---FSAADCCHMLSR 110 (372)
Q Consensus 47 ~~~l~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~ 110 (372)
+++|.+|++++. +++. ....+....+....+..++..++|+||..++ +++.+ ..+.|..+++|+
T Consensus 4 ~~~l~~Eae~L~~qi~~~r~~~~D~~l~q~a~~~~~~~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWD 83 (343)
T KOG0286|consen 4 LEQLRQEAEQLKNQIRDARKKLNDVTLAQIAERLESVGRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWD 83 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccccceeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEE
Confidence 445555555555 3332 3344556667788888999999999999864 33443 267778899999
Q ss_pred eeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--e-EEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421 111 YLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (372)
Q Consensus 111 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 187 (372)
.+..+..+.+.-....|..++|+|.|+++|+|+-|....||++.+. + .......+.+|.+.+.++.|-+ ..+|+++
T Consensus 84 s~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~ 162 (343)
T KOG0286|consen 84 SFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTG 162 (343)
T ss_pred cccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEec
Confidence 9999999999999999999999999999999999999999999854 1 2233445779999999999997 5579999
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 266 (372)
+.|.+..+||+++++....+. ||.+.|.+++++| +++.+++|+.|+..++||++.+.+.+++.
T Consensus 163 SGD~TCalWDie~g~~~~~f~----------------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ 226 (343)
T KOG0286|consen 163 SGDMTCALWDIETGQQTQVFH----------------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE 226 (343)
T ss_pred CCCceEEEEEcccceEEEEec----------------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec
Confidence 999999999999998766554 7999999999999 99999999999999999999999999999
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL 338 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l 338 (372)
+|+..|++++|. |+|.-|++|+.|+++|+||+|.-+ ....+|++++||..|++|.++. -|.++.+
T Consensus 227 ghesDINsv~ff-P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy------~d~~c~v 299 (343)
T KOG0286|consen 227 GHESDINSVRFF-PSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY------DDFTCNV 299 (343)
T ss_pred ccccccceEEEc-cCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee------cCCceeE
Confidence 999999999999 999999999999999999999422 4556899999999999999983 3789999
Q ss_pred eecccceEEEEEeeeE
Q 017421 339 DNYFLLRTFYSFMVHI 354 (372)
Q Consensus 339 w~~~~~~~~~~~~~h~ 354 (372)
||.-.++.+..+.||-
T Consensus 300 WDtlk~e~vg~L~GHe 315 (343)
T KOG0286|consen 300 WDTLKGERVGVLAGHE 315 (343)
T ss_pred eeccccceEEEeeccC
Confidence 9999999999999883
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=267.13 Aligned_cols=217 Identities=20% Similarity=0.217 Sum_probs=201.2
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
..+.|...++|.+........+.+|...|..++|+|+|++|++++.|.+-++||++++..+.. ..+|...|.+++|.
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGHSKGVFSIAFQ 312 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hcccccccceeEec
Confidence 366777899999988888889999999999999999999999999999999999998855443 67999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
|||.++++|+.|..-+|||++++.++.... ||..+|..++|+|+|..||||+.|++++|||++.
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~----------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLA----------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEec----------------ccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 999999999999999999999999866555 7888999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
...+.++.+|.+-|+.|+|+|..|.+|+|++.|++++||..+ ++.+|...|.++..+||++++++++ |
T Consensus 377 r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s------~ 450 (459)
T KOG0272|consen 377 RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS------F 450 (459)
T ss_pred cccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec------c
Confidence 999999999999999999996689999999999999999976 5569999999999999999999987 9
Q ss_pred eceEEEee
Q 017421 333 SPNILLDN 340 (372)
Q Consensus 333 d~~i~lw~ 340 (372)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.4e-35 Score=267.87 Aligned_cols=203 Identities=16% Similarity=0.180 Sum_probs=186.6
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
.+.+|.++|+++.|+|+.++|++++.|+++++|.+.+...+.. ..+|..||+.+.|+|-|-++|+++.|++-++|..
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~---y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI---YKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEE---ecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 4789999999999999999999999999999999998866654 6699999999999999999999999999999999
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
......++.. ||.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.+.+|.++|++++||
T Consensus 523 d~~~PlRifa----------------ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 523 DHNKPLRIFA----------------GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred ccCCchhhhc----------------ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 8877665554 788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 279 DESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
|+|++|++|+.||.|.+||+.. +.+|.+.|.++.|+.+|..|++++ -|++|++||+..-...
T Consensus 587 -p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg------~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 587 -PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG------ADNSVRLWDLTKVIEL 654 (707)
T ss_pred -CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC------CCCeEEEEEchhhccc
Confidence 9999999999999999999974 458999999999999999999986 5888999987655444
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-34 Score=232.72 Aligned_cols=225 Identities=16% Similarity=0.175 Sum_probs=192.0
Q ss_pred ccCCceeEeeeeeCCC-----CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421 100 SAADCCHMLSRYLPVN-----GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 174 (372)
.+.|+.+++|.+.... ....+.+|...|..+..++||++.++++.|+++++||+.+++.... +.+|...|.+
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~---f~GH~~dVls 110 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR---FVGHTKDVLS 110 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE---EEecCCceEE
Confidence 4566778888876543 2467899999999999999999999999999999999999855554 6689889999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEE
Q 017421 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIY 252 (372)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~ 252 (372)
++|+||.+.+++|+.|.+|++|++........... ++...|+|+.|+|+ ..+|++++.|++|+
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---------------~~~~WVscvrfsP~~~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---------------SHREWVSCVRFSPNESNPIIVSASWDKTVK 175 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeecccEEEEEecC---------------CCcCcEEEEEEcCCCCCcEEEEccCCceEE
Confidence 99999999999999999999999976543222221 23569999999998 67999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeee
Q 017421 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
+||+++-+....+.+|.+.++.+.+| |||.+.++|+.||.+.+||++..+ ++...|.+++|+|+--+|+++.
T Consensus 176 vWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-- 252 (315)
T KOG0279|consen 176 VWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-- 252 (315)
T ss_pred EEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc--
Confidence 99999999999999999999999999 999999999999999999998543 6788999999999988898885
Q ss_pred eEEEeeceEEEeecccceEEEEE
Q 017421 328 VISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+..|++||..++..+..+
T Consensus 253 -----~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 253 -----ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred -----CCceEEEeccchhhhhhc
Confidence 555777777766655444
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-33 Score=228.27 Aligned_cols=213 Identities=17% Similarity=0.186 Sum_probs=181.1
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+++|.+.|+++.|++|.++|++++.||.+.|||.-+..+...+.. ....|..++|+|.++++++|+.|+...||+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 67899999999999999999999999999999999988766665332 233699999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
+.+............. .||.+.+.|+.|-+| ..|++++.|.++.+||+++++.+..+.+|.+.|.++++
T Consensus 126 ls~~d~~g~~~v~r~l----------~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSREL----------AGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred cccccccccceeeeee----------cCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 9865332222222111 268899999999885 46899999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+|.+++.+++|+-|+..++||+| ++.+|...|+++.|.|+|.-+++++ -|++.+++|+...+++..|
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS------DD~tcRlyDlRaD~~~a~y 267 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS------DDATCRLYDLRADQELAVY 267 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC------CCceeEEEeecCCcEEeee
Confidence 95599999999999999999998 5669999999999999999999997 3677777777776655444
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.2e-33 Score=233.44 Aligned_cols=210 Identities=23% Similarity=0.259 Sum_probs=179.9
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+.+|.++|.|++|+|+|..|++|+.|.++++||+.+...... .++|...|.+++|+|||+.|++|+.||.|++||
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee---ecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45789999999999999999999999999999999998766554 779999999999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV 272 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v 272 (372)
.++|+...... .||...|++++|.| ..++|++++.||.|+|||+..++++..+.+|..+|
T Consensus 186 pktg~~~g~~l---------------~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V 250 (480)
T KOG0271|consen 186 PKTGQQIGRAL---------------RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV 250 (480)
T ss_pred CCCCCcccccc---------------cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccce
Confidence 99988632221 26889999999986 56899999999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEec-----------cCCCe---------------
Q 017421 273 NTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFN-----------PCNKY--------------- 320 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s-----------~~g~~--------------- 320 (372)
+|+.|- ...+|++|+.|++|++|+.. .+++|..+|+.++.+ |.|+.
T Consensus 251 TCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 251 TCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 999995 55699999999999999975 577999999988877 33433
Q ss_pred ----------EEEEeeeeEEEeeceEEEeecccc-eEEEEEeee
Q 017421 321 ----------LIIYLILVISIYSPNILLDNYFLL-RTFYSFMVH 353 (372)
Q Consensus 321 ----------l~~~~~~~~~~~d~~i~lw~~~~~-~~~~~~~~h 353 (372)
|++++ -|.++.||+-... +++....||
T Consensus 329 ~~~~~~~~erlVSgs------Dd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGS------DDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred HHhhccCcceeEEec------CCceEEEecccccccchhhhhch
Confidence 77775 3688999986544 466666666
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=214.37 Aligned_cols=230 Identities=17% Similarity=0.144 Sum_probs=196.7
Q ss_pred ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 100 SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
.+....++++++..... ...+.+|...|.++.|..+|+++++|+.||+++|||++....-+ ...+.++|.++..
T Consensus 57 aa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR----~~~~~spVn~vvl 132 (311)
T KOG0315|consen 57 AAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR----NYQHNSPVNTVVL 132 (311)
T ss_pred hccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch----hccCCCCcceEEe
Confidence 44556788888777654 46688999999999999999999999999999999999842222 4456679999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
+|+...|+++..+|.|++||+....+....... -...|.++...|||.+++.+...|.+++|++-
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~~c~~~liPe---------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGENSCTHELIPE---------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCCccccccCCC---------------CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 999999999999999999999887653322211 11379999999999999999999999999986
Q ss_pred CC------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEE
Q 017421 258 AN------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 258 ~~------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~ 324 (372)
+. +++..++.|.+.+..+.+| |++++|++++.|.+++||+... +++|..+++.++||.||+||+++
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lS-Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLS-PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTA 276 (311)
T ss_pred CCCccccceEhhheecccceEEEEEEC-CCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEec
Confidence 54 3566788999999999999 9999999999999999999873 45888999999999999999999
Q ss_pred eeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421 325 LILVISIYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 325 ~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
+ -|...++|+...+++++.+.+|..
T Consensus 277 s------sd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 277 S------SDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred C------CCCceeecccccCceeeecCCccc
Confidence 6 589999999999999999999953
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-30 Score=211.58 Aligned_cols=234 Identities=18% Similarity=0.149 Sum_probs=191.0
Q ss_pred ceeeeecccCcc-----CCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 017421 82 TVKMLAGREGNY-----SGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV 153 (372)
Q Consensus 82 ~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 153 (372)
+.+.+.||.... +.++.| .+.|+..++|+....+...+|.+|...|.+++|++|.+.+++|+.|.+|++|++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 356677776643 344444 677788999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEeeecccCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE
Q 017421 154 ERGWKIQKDILAKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF 231 (372)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 231 (372)
... +..+.. ...+..-|.++.|+|+ ...|++++.|++|++||+++.+...... ||+..++
T Consensus 135 ~g~-ck~t~~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~----------------gh~~~v~ 196 (315)
T KOG0279|consen 135 LGV-CKYTIH-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI----------------GHSGYVN 196 (315)
T ss_pred ccc-EEEEEe-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc----------------cccccEE
Confidence 765 333322 2222667999999997 7889999999999999999877544333 6888999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------
Q 017421 232 SLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------- 303 (372)
Q Consensus 232 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------- 303 (372)
.+++||||.++++|+.||.+.+||++.++.+..+. |...|.+++|+ |+.-.|+.+ .+..|+|||+.+..
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs-pnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS-PNRYWLCAA-TATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec-CCceeEeec-cCCceEEEeccchhhhhhcccc
Confidence 99999999999999999999999999999987775 78899999999 887777766 45569999987311
Q ss_pred -------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 304 -------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 304 -------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
.......+++|+++|+.|+++- -|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~------td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGY------TDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeee------cCCcEEEEEee
Confidence 1234468899999999999883 37888999764
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-31 Score=229.70 Aligned_cols=221 Identities=15% Similarity=0.185 Sum_probs=188.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
...|++++|+.+|.+||+|+.||.++||+.... .+. .+..|+++|.++.|+.+|.+|++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~---tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS---TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh---hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 467999999999999999999999999998755 333 3778999999999999999999999999999999988887
Q ss_pred eeecceeecc-ccc------ceecc-C-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 204 ESLANVTEIH-DGL------DFSAA-D-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 204 ~~~~~~~~~~-~~~------~~~~~-~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
.....+.... ..+ .|... . -.||.+.|.++.|+|.|.+|++++.|++++||.+..
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 6655543332 111 11111 0 147999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCC--------CCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEE
Q 017421 259 NKLSLRILAHTSDVNTVCFGDE--------SGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~--------~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~ 324 (372)
..+...+.+|...|+.+.|+|. .+..+++++.|++|++||+. ++..|..+|++++|+|+|+++|+|
T Consensus 391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence 9999999999999999999932 23579999999999999987 455899999999999999999999
Q ss_pred eeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421 325 LILVISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 325 ~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
+ .|+.+.+|+..+++.++++.+-.
T Consensus 471 s------~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 471 S------LDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred C------CCCeeEeccccchheeEeecCCC
Confidence 7 79999999999999999987654
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.2e-30 Score=237.42 Aligned_cols=225 Identities=16% Similarity=0.173 Sum_probs=198.1
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (372)
..+.+|.+....-....++|...+.+++++|||+++|+|+.||.|+|||...+-+... ...|...|+.+.|+..++.
T Consensus 330 gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT---FteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 330 GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT---FTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE---eccCCCceEEEEEEecCCE
Confidence 3678899988888888999999999999999999999999999999999999977776 7789999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeEE
Q 017421 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-CIYVYDLEANKLS 262 (372)
Q Consensus 184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg-~i~iwd~~~~~~~ 262 (372)
+++++.||+|+.||+...+.-+....+.. ....|++..|.|.++++|+.|. .|.+|++++|+.+
T Consensus 407 llssSLDGtVRAwDlkRYrNfRTft~P~p---------------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 407 LLSSSLDGTVRAWDLKRYRNFRTFTSPEP---------------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred EEEeecCCeEEeeeecccceeeeecCCCc---------------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 99999999999999988776554443332 2678999999999999999886 4999999999999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI 336 (372)
Q Consensus 263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i 336 (372)
..+.+|+++|.+++|+ |++..|+++|.|.+||+||+-.- -.+...+..++|+|+|+-|++++ -|++|
T Consensus 472 DiLsGHEgPVs~l~f~-~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT------ldgqI 544 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFS-PDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT------LDGQI 544 (893)
T ss_pred ehhcCCCCcceeeEEc-cccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE------ecceE
Confidence 9999999999999999 99999999999999999998522 15667889999999999999986 58999
Q ss_pred EEeecccceEEEEEeee
Q 017421 337 LLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 337 ~lw~~~~~~~~~~~~~h 353 (372)
.+||...+....+..|-
T Consensus 545 tf~d~~~~~q~~~Idgr 561 (893)
T KOG0291|consen 545 TFFDIKEAVQVGSIDGR 561 (893)
T ss_pred EEEEhhhceeeccccch
Confidence 99998888777665554
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.5e-31 Score=219.87 Aligned_cols=213 Identities=17% Similarity=0.150 Sum_probs=193.2
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++..... +.+|...|..+++++...++++++.|+.|+.||
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt---ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT---LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe---ecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 46789999999999999999999999999999999999977665 668888999999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
++..+.++... ||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+
T Consensus 222 Le~nkvIR~Yh----------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~ 285 (460)
T KOG0285|consen 222 LEYNKVIRHYH----------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMC 285 (460)
T ss_pred chhhhhHHHhc----------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEe
Confidence 99988755554 78999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
. +....+++|+.|++|++||++ ++..|...|.+++.+|....+|+++ ..+|+-|++..|.-+..+.
T Consensus 286 ~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~~nls 357 (460)
T KOG0285|consen 286 Q-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFLQNLS 357 (460)
T ss_pred e-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchhhccc
Confidence 9 666679999999999999998 4558999999999999988888884 6678999999998888888
Q ss_pred eeEEEe
Q 017421 352 VHILFS 357 (372)
Q Consensus 352 ~h~~~~ 357 (372)
+|..+.
T Consensus 358 gh~~ii 363 (460)
T KOG0285|consen 358 GHNAII 363 (460)
T ss_pred ccccee
Confidence 886555
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=7.2e-31 Score=240.38 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=182.6
Q ss_pred ceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 017421 82 TVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDV 153 (372)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~ 153 (372)
..+.+.||... |++..+| .+.|...++|.+..........+|..+|+.+.|+|.|-+||+++.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 45568888874 5666665 566689999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421 154 ERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233 (372)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 233 (372)
.....++. ..+|-+.|.|+.|+|+..++++|+.|.+|++||+.+|...+++. ||.++|.++
T Consensus 523 d~~~PlRi---faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~----------------GH~~~V~al 583 (707)
T KOG0263|consen 523 DHNKPLRI---FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT----------------GHKGPVTAL 583 (707)
T ss_pred ccCCchhh---hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec----------------CCCCceEEE
Confidence 87655543 67898999999999999999999999999999999999877775 799999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 234 KFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
+|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|+++.|+ .+|..||+|+.|.+|++||+..
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEe-cCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999873
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.9e-31 Score=220.53 Aligned_cols=236 Identities=16% Similarity=0.171 Sum_probs=208.7
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.+..+.+|+....+...-+++|...|..++|+..|+++++++.|-.+++||..+... ......+|...|.++.|-|
T Consensus 126 as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~--c~ks~~gh~h~vS~V~f~P 203 (406)
T KOG0295|consen 126 ASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR--CIKSLIGHEHGVSSVFFLP 203 (406)
T ss_pred ecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH--HHHHhcCcccceeeEEEEe
Confidence 44578899999999998888999999999999999999999999999999999987321 2223557777899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
.|.+|++++.|.+|+.|++.++-+...+. +|...|..++.+.||.++++++.|.+|++|-+.++
T Consensus 204 ~gd~ilS~srD~tik~We~~tg~cv~t~~----------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDTGYCVKTFP----------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred cCCeeeecccccceeEEecccceeEEecc----------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 99999999999999999999998866655 67789999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEeCC--------------CCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCC
Q 017421 260 KLSLRILAHTSDVNTVCFGDE--------------SGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNK 319 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~--------------~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~ 319 (372)
++...+..|+-+|.|++|.|. .++++++++.|++|++||+. ++.+|..+|.+++|+|.|+
T Consensus 268 ~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 268 QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCe
Confidence 998999999999999999741 23599999999999999998 4569999999999999999
Q ss_pred eEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEEeee
Q 017421 320 YLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGY 359 (372)
Q Consensus 320 ~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~~~~ 359 (372)
||+++. -|+++++||+.+++....+..|-.|-.-
T Consensus 348 yi~Sca------DDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 348 YILSCA------DDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred EEEEEe------cCCcEEEEEeccceeeeccCCCcceeEE
Confidence 999986 4899999999999999999888665543
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=236.51 Aligned_cols=237 Identities=24% Similarity=0.231 Sum_probs=200.7
Q ss_pred ccCCCCcc---ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeec
Q 017421 92 NYSGRGRF---SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILA 165 (372)
Q Consensus 92 ~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~ 165 (372)
.|++++.+ ...++.+++|...... ....+.+|...|++++|+|+++++++++.|++|+|||+... ..+.. .
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~---l 242 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT---L 242 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE---e
Confidence 35555554 5566778888885555 45556889999999999999999999999999999999443 44444 6
Q ss_pred ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (372)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~ 245 (372)
.+|...|++++|+|+++++++|+.|++|++||++++++..... +|...|++++|++++++|+++
T Consensus 243 ~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 243 KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------GHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------ccCCceEEEEECCCCCEEEEc
Confidence 6999999999999999999999999999999999988766554 688899999999999999999
Q ss_pred eCCCeEEEEECCCCe--EEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCC---CeeEE
Q 017421 246 SSDDCIYVYDLEANK--LSLRILAHTSD--VNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSIN---PCNKY 312 (372)
Q Consensus 246 s~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~---~v~~~ 312 (372)
+.|+.|++||+.++. +...+.++... +++++|+ |++.+|+++..|+.+++||++.. ..|.. .+.+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 999999999999998 56777766655 9999999 99999999999999999999843 24444 34555
Q ss_pred EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421 313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
..++.+.+++++. .|+.|.+|+..++..+..+.+|.
T Consensus 386 ~~~~~~~~i~sg~------~d~~v~~~~~~s~~~~~~l~~h~ 421 (456)
T KOG0266|consen 386 TLSTGGKLIYSGS------EDGSVYVWDSSSGGILQRLEGHS 421 (456)
T ss_pred cccCCCCeEEEEe------CCceEEEEeCCccchhhhhcCCC
Confidence 6678899999886 79999999999999999999994
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=236.07 Aligned_cols=210 Identities=23% Similarity=0.288 Sum_probs=183.4
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC-
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS- 200 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~- 200 (372)
.+...|.++.|+++|+.+++++.++.+++|+....+. .......+|...|..++|+|+++++++++.|++|++||+..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD 235 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence 3478899999999999999999999999999976652 11122468888999999999999999999999999999943
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 280 (372)
+....... ||...|++++|+|+|+++++|+.|++|++||++++++...+.+|...|++++|+ +
T Consensus 236 ~~~~~~l~----------------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~-~ 298 (456)
T KOG0266|consen 236 GRNLKTLK----------------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFS-P 298 (456)
T ss_pred CeEEEEec----------------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEEC-C
Confidence 34444333 688899999999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEEeCCCeEEEEeccccc--------CCCC--CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 281 SGHLIYSGSDDNLCKVNSVLLLT--------RSIN--PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 281 ~~~~l~s~~~dg~i~vwd~~~~~--------~~~~--~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
++++|++++.|+.|++||+.+.. .+.. +++.+.|+|++.+++++. -|+.+++||+..++....+
T Consensus 299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~------~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS------LDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec------CCCeEEEEEccCCcceeee
Confidence 99999999999999999997443 2222 589999999999999985 4779999999999999999
Q ss_pred eeeEE
Q 017421 351 MVHIL 355 (372)
Q Consensus 351 ~~h~~ 355 (372)
.+|..
T Consensus 373 ~~~~~ 377 (456)
T KOG0266|consen 373 TGHSN 377 (456)
T ss_pred cccCC
Confidence 99864
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2.1e-29 Score=201.69 Aligned_cols=240 Identities=17% Similarity=0.176 Sum_probs=202.7
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+-|..+++|....+.....++...+.|+.+.+.|+++.||+++. ..|++||+.++... ......+|...|+++.|..
T Consensus 16 A~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred ccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEeccCCceEEEEEee
Confidence 345678889999988888888888999999999999999999887 68999999987543 2233667878899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+|+++++|+.||+++|||++...+.+... |.++|+++..+|+...|++|..+|.|++||+...
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-----------------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhcc-----------------CCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 99999999999999999999866655444 5569999999999999999999999999999988
Q ss_pred eEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------------cccCCCCCeeEEEeccCCCeEEEEee
Q 017421 260 KLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------------LLTRSINPCNKYLFNPCNKYLIIYLI 326 (372)
Q Consensus 260 ~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------~~~~~~~~v~~~~~s~~g~~l~~~~~ 326 (372)
.+...+. ....+|.++... ++|.+++.+...|.+++|++- .++.|...+..+.+|||+++|++++
T Consensus 157 ~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s- 234 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS- 234 (311)
T ss_pred ccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec-
Confidence 7665553 445689999999 999999999999999999985 3457888999999999999999986
Q ss_pred eeEEEeeceEEEeecccc-eEEEEEeee------EEEe---eecccCCc
Q 017421 327 LVISIYSPNILLDNYFLL-RTFYSFMVH------ILFS---GYLHNDHN 365 (372)
Q Consensus 327 ~~~~~~d~~i~lw~~~~~-~~~~~~~~h------~~~~---~~~~~~~~ 365 (372)
.|.++++|+..+. +....+.+| +.|+ -||-...+
T Consensus 235 -----sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 235 -----SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred -----CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 6899999998887 777777787 5665 45555444
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.3e-29 Score=201.23 Aligned_cols=204 Identities=20% Similarity=0.278 Sum_probs=174.6
Q ss_pred ccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
..+.+|+++++.++|+|- |..||+++.|+.|+||++..+. -..+.....+|+..|.+++|+|.|++|++++.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 456789999999999997 8999999999999999998532 22233344578889999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCe
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV 272 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v 272 (372)
|.-..+.......+ .||.+.|.+++|+++|++||+++.|..|.||.+..+ ++...++.|...|
T Consensus 88 w~k~~~efecv~~l--------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 88 WKKEDGEFECVATL--------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eecCCCceeEEeee--------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 99876665433222 168889999999999999999999999999999754 4778889999999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEecc---------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 273 NTVCFGDESGHLIYSGSDDNLCKVNSVL---------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
..+.|+ |...+|++++.|++|++|+-. ++.+|...|.+++|+|.|..|++++ -|+++++|.+.
T Consensus 154 K~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s------dD~tv~Iw~~~ 225 (312)
T KOG0645|consen 154 KHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS------DDGTVSIWRLY 225 (312)
T ss_pred cEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec------CCcceEeeeec
Confidence 999999 999999999999999999754 5668889999999999999999886 47888888744
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=224.26 Aligned_cols=200 Identities=19% Similarity=0.219 Sum_probs=178.6
Q ss_pred CccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 117 PWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 117 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
...++. |...|++++|+|+...|++++.||+|+|||......... +.+|.+.|.+++|+|...+|++++.|..|++
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v---L~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV---LRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe---eccCCCCcceeccCCccceeEEccCCceeEe
Confidence 334444 559999999999999999999999999999987644443 5799999999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
||.+++.++.... +|...|..+.|+|++++|++++.|..++++|+++.+.++++.+|...|+++
T Consensus 249 WDprSg~cl~tlh----------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 249 WDPRSGSCLATLH----------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred ecCCCcchhhhhh----------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee
Confidence 9999999866554 688899999999999999999999999999999989999999999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
.|+|-...+|.+|+.||.|..|.+.. ...|...|++++|+|=|..|++++ -|.++++|.-
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs------nd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS------NDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecC------CCcceeeecc
Confidence 99988899999999999999999862 237899999999999999999986 5888888853
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=222.25 Aligned_cols=216 Identities=16% Similarity=0.204 Sum_probs=186.6
Q ss_pred CceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC
Q 017421 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR 182 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 182 (372)
..-+.+|+........+++.|..+|+++.|+++|.++++|+.+|.|++|+..-.. +.. ....|...|++++|+|+..
T Consensus 117 SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~--~~ahh~eaIRdlafSpnDs 193 (464)
T KOG0284|consen 117 SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI--IQAHHAEAIRDLAFSPNDS 193 (464)
T ss_pred cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH--hhHhhhhhhheeccCCCCc
Confidence 3456678877777777889999999999999999999999999999999987542 111 1334447899999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 017421 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (372)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 262 (372)
.|++++.||+|+|||....+...... ||...|.+++|+|...+|++|+.|..|++||.++++++
T Consensus 194 kF~t~SdDg~ikiWdf~~~kee~vL~----------------GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 194 KFLTCSDDGTIKIWDFRMPKEERVLR----------------GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred eeEEecCCCeEEEEeccCCchhheec----------------cCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 99999999999999998877654443 78889999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI 336 (372)
Q Consensus 263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i 336 (372)
.++.+|...|..+.|+ +++++|+++|.|..++++|+++ .++|...|+++.|+|-..-|++.. -||+.+
T Consensus 258 ~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg-----g~Dgsv 331 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG-----GSDGSV 331 (464)
T ss_pred hhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec-----cCCCce
Confidence 9999999999999999 9999999999999999999984 448999999999999876655441 279999
Q ss_pred EEeeccc
Q 017421 337 LLDNYFL 343 (372)
Q Consensus 337 ~lw~~~~ 343 (372)
..|.+..
T Consensus 332 vh~~v~~ 338 (464)
T KOG0284|consen 332 VHWVVGL 338 (464)
T ss_pred EEEeccc
Confidence 9998773
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=200.40 Aligned_cols=214 Identities=16% Similarity=0.193 Sum_probs=192.9
Q ss_pred CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (372)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 192 (372)
|......+..+.++|..+.|+-||++.++++.|.+|++|+...+..+.. ..+|...|..++.+.|...|++++.|..
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt---YsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT---YSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee---ecCCCceeeeccccccccccccCCCCce
Confidence 4455667888999999999999999999999999999999999977776 6688889999999999999999999999
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTS 270 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~ 270 (372)
+.+||+++|+...... ||.+.|+.+.|+.+...+++|+.|.++++||.++. ++++.+.....
T Consensus 83 v~vwDV~TGkv~Rr~r----------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFR----------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred EEEEEcccCeeeeecc----------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 9999999999876665 78899999999999999999999999999999865 57888888888
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT 346 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~ 346 (372)
.|.++..+ +..|++|+.||++|.||+|... ....+|++++|+++++..+++. -|++++|-|-.+|+.
T Consensus 147 ~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 147 GVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDKETGKL 217 (307)
T ss_pred ceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee------ccceeeecccchhHH
Confidence 99999886 6789999999999999999543 5678999999999999988774 599999999999999
Q ss_pred EEEEeeeE
Q 017421 347 FYSFMVHI 354 (372)
Q Consensus 347 ~~~~~~h~ 354 (372)
+.+|.||.
T Consensus 218 L~sYkGhk 225 (307)
T KOG0316|consen 218 LKSYKGHK 225 (307)
T ss_pred HHHhcccc
Confidence 99999996
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=220.13 Aligned_cols=231 Identities=17% Similarity=0.185 Sum_probs=198.6
Q ss_pred eeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEE
Q 017421 108 LSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLV 185 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 185 (372)
...+.|....+.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +.+++. ..+|..+|.++.|+++|..++
T Consensus 198 ~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt---f~gH~k~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 198 ERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT---FKGHRKPVRDASFNNCGTSFL 274 (503)
T ss_pred ceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh---hhcchhhhhhhhccccCCeee
Confidence 345567777788899999999999999 899999999999999999987 445554 779999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Q 017421 186 YASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLR 264 (372)
Q Consensus 186 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~ 264 (372)
+++.|+.|++||+++|++....... ..++|+.|+|++ +.+++|+.|+.|+.||+++++.++.
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~-----------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLD-----------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred eeecceeeeeeccccceEEEEEecC-----------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 9999999999999999986655432 278999999998 8889999999999999999999999
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------------------------------------------
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------------------------------------------- 301 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------------------------------------------- 301 (372)
+..|-+.|..+.|- ++|+.+++.+.|++++||+.+.
T Consensus 338 Yd~hLg~i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 338 YDRHLGAILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred HHhhhhheeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence 99999999999999 9999999999999999999751
Q ss_pred ---------ccCCC--CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee-EEEeeecccCCc
Q 017421 302 ---------LTRSI--NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH-ILFSGYLHNDHN 365 (372)
Q Consensus 302 ---------~~~~~--~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h-~~~~~~~~~~~~ 365 (372)
+++|. +--..+.|||||.+|++|. -||.+.+||+.+-+.+..+.+| ..-.+...++++
T Consensus 417 ~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd------sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 417 PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD------SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred ccccCHhhhhcceeccCceeeEEEcCCCCeEEeec------CCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 01222 2346789999999999995 5899999999999999999999 444566655555
No 24
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.6e-27 Score=221.69 Aligned_cols=211 Identities=16% Similarity=0.083 Sum_probs=169.4
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE----EEeeecccCCcceEEEEECCCC-CEEEEEeCCC
Q 017421 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSP 191 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 191 (372)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++... .....+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764211 1123356888899999999975 6899999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (372)
.|++||++++....... +|...|.+++|+|+|++|++++.|+.|++||+++++.+..+.+|.+.
T Consensus 149 tVrIWDl~tg~~~~~l~----------------~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK----------------CHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEEEECCCCeEEEEEc----------------CCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 99999999886543322 46678999999999999999999999999999999998888888765
Q ss_pred -eEEEEEeCCCCCEEEEEe----CCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421 272 -VNTVCFGDESGHLIYSGS----DDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILL 338 (372)
Q Consensus 272 -v~~~~~sp~~~~~l~s~~----~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l 338 (372)
+..+.|. +++..+++++ .|+.|++||++... .....+....|++++++|++++ .-|++|++
T Consensus 213 ~~~~~~w~-~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lgg-----kgDg~Iri 286 (493)
T PTZ00421 213 KSQRCLWA-KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGS-----KGEGNIRC 286 (493)
T ss_pred cceEEEEc-CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEE-----eCCCeEEE
Confidence 3467888 6666666654 47999999998543 1223455667999999988774 12899999
Q ss_pred eecccceEEEEE
Q 017421 339 DNYFLLRTFYSF 350 (372)
Q Consensus 339 w~~~~~~~~~~~ 350 (372)
||+.+++.+..+
T Consensus 287 wdl~~~~~~~~~ 298 (493)
T PTZ00421 287 FELMNERLTFCS 298 (493)
T ss_pred EEeeCCceEEEe
Confidence 999988866543
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.6e-29 Score=215.73 Aligned_cols=239 Identities=16% Similarity=0.188 Sum_probs=194.4
Q ss_pred CCCccccceeeeecccCccCCCCcc---------ccCCceeEeeeeeC-CCCCccccCCCCceEEEEECCCCCEEEEEeC
Q 017421 75 KRHLPVSTVKMLAGREGNYSGRGRF---------SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ 144 (372)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 144 (372)
+..+|.+....+.||..+.+....| .+.|..+.+|+++. ......+.+|..+|..++|+++|..|++++.
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 3444666777888888865443322 67788899999998 5567789999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCC
Q 017421 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (372)
Q Consensus 145 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
|+.|++||+++|+.+...... ..++++.|+|++ +.+++|+.|+.|+.||+++++......
T Consensus 279 D~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd--------------- 339 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD--------------- 339 (503)
T ss_pred ceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------
Confidence 999999999999887764432 268999999988 788999999999999999998644332
Q ss_pred CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE---------------------------------------
Q 017421 224 GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--------------------------------------- 264 (372)
Q Consensus 224 ~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--------------------------------------- 264 (372)
.|-+.|..+.|-++|+.+++.++|++++||+.+.+-.+..
T Consensus 340 -~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 -RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred -hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 3667999999999999999999999999999876432211
Q ss_pred -------eecCC--CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCC-eEEEEeeee
Q 017421 265 -------ILAHT--SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNK-YLIIYLILV 328 (372)
Q Consensus 265 -------~~~~~--~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~-~l~~~~~~~ 328 (372)
+.+|. +.-..+.|| |||.+|++|+.||.+.+||.+ .++.|..++..+.|+|... .+|+++
T Consensus 419 r~nkkK~feGh~vaGys~~v~fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~--- 494 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFS-PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCG--- 494 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEc-CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecc---
Confidence 12332 234568899 999999999999999999987 4668999999999999854 455554
Q ss_pred EEEeeceEEEee
Q 017421 329 ISIYSPNILLDN 340 (372)
Q Consensus 329 ~~~~d~~i~lw~ 340 (372)
|||.|++|+
T Consensus 495 ---w~G~Ikiwd 503 (503)
T KOG0282|consen 495 ---WDGLIKIWD 503 (503)
T ss_pred ---cCceeEecC
Confidence 999999996
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=6.8e-28 Score=197.88 Aligned_cols=236 Identities=17% Similarity=0.175 Sum_probs=199.0
Q ss_pred cCCCCcc---ccCCceeEeeeeeC-CCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC
Q 017421 93 YSGRGRF---SAADCCHMLSRYLP-VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL 168 (372)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 168 (372)
|.+.+.+ .+.|+.+.+|+... .+..+.+.+|.++|..+.|.+|++.|++++.|.+|+.||.++++...+ .+.|
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk---~k~h 131 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK---HKGH 131 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh---hccc
Confidence 4555543 67788899999554 566788999999999999999999999999999999999999988776 6677
Q ss_pred CcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 169 RWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 169 ~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
..-|.++.-+.-| .++.+++.|+++++||+++......... ..+++++.|..++..+++|+-
T Consensus 132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-----------------kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-----------------KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred cceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-----------------ceeEEEEEecccccceeeccc
Confidence 7778877744434 4566788899999999998776544421 237999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------C----CCCCeeEEE
Q 017421 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------R----SINPCNKYL 313 (372)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~----~~~~v~~~~ 313 (372)
|+.|++||++.+.....+.+|...|+.+..+ ++|.++.+-+.|.++++||++... + .......++
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs 273 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS 273 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee
Confidence 9999999999999999999999999999999 999999999999999999998322 1 123346789
Q ss_pred eccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421 314 FNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 314 ~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
|+|++..+.+++ -|..+++||....+.++-+-||..
T Consensus 274 wsp~~~~i~ags------~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 274 WSPNGTKITAGS------ADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ccCCCCcccccc------ccceEEEeecccccEEEEcCCcce
Confidence 999999998886 588999999999999999999953
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=4.7e-29 Score=208.48 Aligned_cols=215 Identities=18% Similarity=0.179 Sum_probs=186.1
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
...|.++.+|+.........+.+|++.|.|+.|. .+.|++|+.|.+|+|||+++++.+.. ..+|-..|..+.|+
T Consensus 213 GlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t---lihHceaVLhlrf~- 286 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT---LIHHCEAVLHLRFS- 286 (499)
T ss_pred ccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH---HhhhcceeEEEEEe-
Confidence 4556788999988888889999999999999986 66999999999999999999987765 55777889999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
..++++++.|..+.+||+.....+....... ||.+.|+.+.|+ .++|++++.|.+|++|++.++
T Consensus 287 -ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-------------GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 287 -NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-------------GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred -CCEEEEecCCceeEEEeccCchHHHHHHHHh-------------hhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 5689999999999999998876544444332 688899999987 569999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
+.++++.+|...|.|+.+. ++++++|+.|.+|++||+. .+++|..-|.++.|.. +.+++|. ||
T Consensus 351 efvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~--krIVSGa------YD 419 (499)
T KOG0281|consen 351 EFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGA------YD 419 (499)
T ss_pred eeehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--ceeeecc------cc
Confidence 9999999999999999874 8999999999999999986 4669999999999854 5677776 99
Q ss_pred ceEEEeecccceEE
Q 017421 334 PNILLDNYFLLRTF 347 (372)
Q Consensus 334 ~~i~lw~~~~~~~~ 347 (372)
|.|++||+.++-..
T Consensus 420 GkikvWdl~aaldp 433 (499)
T KOG0281|consen 420 GKIKVWDLQAALDP 433 (499)
T ss_pred ceEEEEecccccCC
Confidence 99999998876543
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=9.2e-28 Score=197.13 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=179.1
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++..... .....++|.+.|..+.|.+|++.+++++.|.+|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc--ceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 345689999999999999999999999999999999765422 233466999999999999999999999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
|+++|+.....+ +|..-++.+.-+.-| .++.+++.|+++++||+++...++++. ..-.++++
T Consensus 118 D~~tG~~~rk~k----------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 118 DAETGKRIRKHK----------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred ecccceeeehhc----------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 999999865554 577788888744344 456788999999999999998887775 45689999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc----e
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL----R 345 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~----~ 345 (372)
.|. ..+..+.+|+-|+.|++||++ ++.+|..+|+.+..+|+|.++.+-+ .|.++++||+..- +
T Consensus 181 ~f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns------Md~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 181 GFK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS------MDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred Eec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc------ccceEEEEEecccCCCCc
Confidence 999 899999999999999999996 5679999999999999999998764 5889999987543 4
Q ss_pred EEEEEeeeE
Q 017421 346 TFYSFMVHI 354 (372)
Q Consensus 346 ~~~~~~~h~ 354 (372)
.+.-|.+|.
T Consensus 254 ~v~if~g~~ 262 (338)
T KOG0265|consen 254 CVKIFQGHI 262 (338)
T ss_pred eEEEeecch
Confidence 466677764
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1e-26 Score=204.11 Aligned_cols=245 Identities=19% Similarity=0.198 Sum_probs=193.9
Q ss_pred cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (372)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (372)
+.|..+.++.-.|-+....+..|..-|+|+.|+|||.+|++.+.||++.+||-.+++.+..+.....|++.|.+++|+||
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD 246 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC
Confidence 33345556666677777778899999999999999999999999999999999999888876667799999999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecceeeccc----cc----------------ce-ecc------CCCCccccEEEE
Q 017421 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD----GL----------------DF-SAA------DDGGYSFGIFSL 233 (372)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~----------------~~-~~~------~~~~h~~~i~~~ 233 (372)
++.+++++.|.+++|||+.+.++..........+ ++ .| ++. .-.||...|+++
T Consensus 247 s~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 247 STQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred CceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 9999999999999999999988765544332211 11 11 111 115899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeEE-----------EEee------------------------------------
Q 017421 234 KFSTDGRELVAGSSDDCIYVYDLEANKLS-----------LRIL------------------------------------ 266 (372)
Q Consensus 234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~------------------------------------ 266 (372)
..+|++++|++|+.||.|.-||..++..- ..+.
T Consensus 327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~ 406 (603)
T KOG0318|consen 327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS 406 (603)
T ss_pred EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence 99999999999999999999998765321 0000
Q ss_pred --------------------------cC--------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccC
Q 017421 267 --------------------------AH--------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTR 304 (372)
Q Consensus 267 --------------------------~~--------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~ 304 (372)
.+ .-...+++++ |+++.+++|+.|+.|+||.+. ....
T Consensus 407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~ 485 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE 485 (603)
T ss_pred CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeec
Confidence 00 0123567888 999999999999999999986 2347
Q ss_pred CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 305 SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 305 ~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
|..+|+.++||||+.+|+++. -.+.+.+||+.+........+
T Consensus 486 h~a~iT~vaySpd~~yla~~D------a~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 486 HRAAITDVAYSPDGAYLAAGD------ASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred ccCCceEEEECCCCcEEEEec------cCCcEEEEEcccCceecceee
Confidence 899999999999999999994 357888999988887554444
No 30
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=8e-28 Score=198.37 Aligned_cols=218 Identities=19% Similarity=0.202 Sum_probs=182.1
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeeecccCCcceEEEEECCCC
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (372)
...+..|++++.+.+|+|||.++|+|+.|-.|+|.|++.. ..-.....+..|..+|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3456789999999999999999999999999999998721 1111233466888899999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 261 (372)
..|++|+.|++|+++|+.......-.+... ...+|.++.|+|.|.+|+.|++..++++||+++-++
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------------d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------------DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh--------------ccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence 999999999999999998765443333322 123899999999999999999999999999999988
Q ss_pred EEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------ccc-CC-CCCeeEEEeccCCCeEEEEeeeeEE
Q 017421 262 SLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLT-RS-INPCNKYLFNPCNKYLIIYLILVIS 330 (372)
Q Consensus 262 ~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~-~~-~~~v~~~~~s~~g~~l~~~~~~~~~ 330 (372)
...-. .|.+.|+++.++ +.+++.++++.||.|++||-- ++. .| ...|.+..|..+|++++++.
T Consensus 251 fvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG----- 324 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG----- 324 (430)
T ss_pred eeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-----
Confidence 65543 688999999999 999999999999999999953 222 33 46799999999999999875
Q ss_pred EeeceEEEeecccceEEEEEeeeEE
Q 017421 331 IYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 331 ~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
-|..++||.+.+++.+..|.|-..
T Consensus 325 -~DS~vkLWEi~t~R~l~~YtGAg~ 348 (430)
T KOG0640|consen 325 -KDSTVKLWEISTGRMLKEYTGAGT 348 (430)
T ss_pred -CcceeeeeeecCCceEEEEecCCc
Confidence 699999999999999999988643
No 31
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=200.37 Aligned_cols=246 Identities=16% Similarity=0.148 Sum_probs=213.6
Q ss_pred CccccceeeeecccC-----ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcE
Q 017421 77 HLPVSTVKMLAGREG-----NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQI 148 (372)
Q Consensus 77 ~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 148 (372)
-.|.+..+++.||.. .+.+... ..++|+.+.+|++....-...+.+|...|..+++|+--.++++++.|+.|
T Consensus 138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence 346677888888886 2333332 27888999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccc
Q 017421 149 RIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (372)
Q Consensus 149 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 228 (372)
+.||++..+.++. ..+|-+.|.+++.+|.-..|++|+.|..++|||+++........ ||..
T Consensus 218 KCwDLe~nkvIR~---YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~----------------GH~~ 278 (460)
T KOG0285|consen 218 KCWDLEYNKVIRH---YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS----------------GHTN 278 (460)
T ss_pred EEEechhhhhHHH---hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec----------------CCCC
Confidence 9999998866665 77898999999999999999999999999999999987654444 7999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cc
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LL 302 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~ 302 (372)
+|..+.+.|....+++|+.|++|++||++.++...++..|...|.+++.+ |....||+++.|. |+-|++. .+
T Consensus 279 ~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lh-P~e~~fASas~dn-ik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 279 PVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLH-PKENLFASASPDN-IKQWKLPEGEFLQNL 356 (460)
T ss_pred cceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecC-CchhhhhccCCcc-ceeccCCccchhhcc
Confidence 99999999988889999999999999999999999999999999999999 8899999998765 8999986 45
Q ss_pred cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
.+|...|..+....||-++..+ -++.+.+||+.+|..++.+
T Consensus 357 sgh~~iintl~~nsD~v~~~G~-------dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDGVLVSGG-------DNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ccccceeeeeeeccCceEEEcC-------CceEEEEEecCcCcccccc
Confidence 5788899999999997666555 3678889999999887766
No 32
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.7e-26 Score=214.65 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=165.1
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeE-EE----EeeecccCCcceEEEEE
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK-IQ----KDILAKSLRWTVTDTSL 177 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~-~~----~~~~~~~~~~~v~~~~~ 177 (372)
..+.+|+.........+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.++.. .. ......+|...|.+++|
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf 133 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW 133 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence 34556665554455668899999999999996 78999999999999999976421 11 11234678889999999
Q ss_pred CCCCCEE-EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421 178 SPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (372)
Q Consensus 178 ~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~ 256 (372)
+|++..+ ++++.|+.|++||++++....... |...|.+++|+|+|.+|++++.|+.|+|||+
T Consensus 134 ~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 9988764 688999999999999887532221 2247999999999999999999999999999
Q ss_pred CCCeEEEEeecCCCCeEEE-----EEeCCCCCEEEEEeCCC----eEEEEeccccc------CC---CCCeeEEEeccCC
Q 017421 257 EANKLSLRILAHTSDVNTV-----CFGDESGHLIYSGSDDN----LCKVNSVLLLT------RS---INPCNKYLFNPCN 318 (372)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~-----~~sp~~~~~l~s~~~dg----~i~vwd~~~~~------~~---~~~v~~~~~s~~g 318 (372)
++++.+..+.+|.+.+.+. .|+ +++.+|++++.|+ .|+|||++... .+ ...+......++|
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs-~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLG-GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEc-CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 9999999999998765443 345 7888899888764 79999998432 11 1222223334557
Q ss_pred CeEEEEeeeeEEEeeceEEEeecccce
Q 017421 319 KYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
.++++|. -|++|++|++..+.
T Consensus 276 ~l~lsGk------GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 276 LIYLIGK------GDGNCRYYQHSLGS 296 (568)
T ss_pred CEEEEEE------CCCeEEEEEccCCc
Confidence 7777774 38999999987663
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=221.21 Aligned_cols=221 Identities=17% Similarity=0.158 Sum_probs=195.6
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (372)
..+.+|++.-......|..|.++|++++|+|++.+|++|+.|-.|+||+..+.+++.. +.+|-..|..+.|++.-.+
T Consensus 31 G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft---L~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 31 GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT---LLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh---hccccceeEEeeccCCCce
Confidence 3567899888888899999999999999999999999999999999999998876665 7799999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 017421 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--- 260 (372)
Q Consensus 184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--- 260 (372)
|++++.|-+|+||+..+++++.... ||...|.|..|+|...+++++|.|.+|++||+..-+
T Consensus 108 IlSASDDQTIrIWNwqsr~~iavlt----------------GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~ 171 (1202)
T KOG0292|consen 108 ILSASDDQTIRIWNWQSRKCIAVLT----------------GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKN 171 (1202)
T ss_pred EEEccCCCeEEEEeccCCceEEEEe----------------cCceEEEeeccCCccceEEEecccceEEEEeecchhccC
Confidence 9999999999999999999877665 788999999999999999999999999999985210
Q ss_pred --------------------------EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCC
Q 017421 261 --------------------------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSI 306 (372)
Q Consensus 261 --------------------------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~ 306 (372)
..+.+.+|...|+-++|+ |.-.+|++|+.|..|++|.+. +..+|.
T Consensus 172 ~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~ 250 (1202)
T KOG0292|consen 172 KAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY 250 (1202)
T ss_pred CCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-CCcceEEecCCcceeeEEEeccccceeehhhhccc
Confidence 123456899999999999 888899999999999999875 566999
Q ss_pred CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
++|+++-|+|...++++.+ .|++|++||....+.+..|
T Consensus 251 nnVssvlfhp~q~lIlSns------EDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQDLILSNS------EDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred CCcceEEecCccceeEecC------CCccEEEEecccccceeee
Confidence 9999999999988887775 6889999998877776666
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=198.22 Aligned_cols=209 Identities=14% Similarity=0.155 Sum_probs=182.4
Q ss_pred eEeeeeeCC-CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421 106 HMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (372)
Q Consensus 106 ~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 184 (372)
..+|.+... .......+|...|.+++|-|.|.+|++++.|.+|+.|++.++.++.. ..+|..-|..+..+.||..+
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t---~~~h~ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT---FPGHSEWVRMVRVNQDGTII 250 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe---ccCchHhEEEEEecCCeeEE
Confidence 455555542 22344578999999999999999999999999999999999988876 67888889999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---------------CCEEEEEeCCC
Q 017421 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---------------GRELVAGSSDD 249 (372)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---------------~~~l~s~s~dg 249 (372)
++++.|.+|++|-+.++.+..... +|..+|.|++|-|. ++++.+++.|+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR----------------~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELR----------------EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhh----------------ccccceEEEEecccccCcchhhccCCCCCccEEEeecccc
Confidence 999999999999999987755554 56778999999762 25899999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEE
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLII 323 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~ 323 (372)
+|++||+.++.++.++.+|...|..++|+ |.|++|+++..|+++++||++. +..|..-|+++.|+.+-.++++
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEe
Confidence 99999999999999999999999999999 9999999999999999999984 4478888999999999999998
Q ss_pred EeeeeEEEeeceEEEee
Q 017421 324 YLILVISIYSPNILLDN 340 (372)
Q Consensus 324 ~~~~~~~~~d~~i~lw~ 340 (372)
|+ -|.++++|.
T Consensus 394 Gs------Vdqt~KvwE 404 (406)
T KOG0295|consen 394 GS------VDQTVKVWE 404 (406)
T ss_pred cc------ccceeeeee
Confidence 85 377788875
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.5e-26 Score=199.14 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=169.4
Q ss_pred eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------------------
Q 017421 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----------------------- 162 (372)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------------------- 162 (372)
.++|+. +......+..|.++|.++.|+..|++|++++-|+++.+||..++......
T Consensus 259 ~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t 337 (524)
T KOG0273|consen 259 ARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST 337 (524)
T ss_pred EEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence 444443 44556678899999999999999999999999999999998765322211
Q ss_pred ---------------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcc
Q 017421 163 ---------------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS 227 (372)
Q Consensus 163 ---------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 227 (372)
....+|.++|.++.|+|.+.+|++++.|+++++|............ .|.
T Consensus 338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~----------------~Hs 401 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ----------------AHS 401 (524)
T ss_pred CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh----------------hhc
Confidence 1223788899999999999999999999999999987766533332 577
Q ss_pred ccEEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421 228 FGIFSLKFSTDG---------RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS 298 (372)
Q Consensus 228 ~~i~~~~~sp~~---------~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd 298 (372)
..|..+.|+|+| ..+++++.|++|++||+..+.++.++..|..+|++++|+ |+|+++|+|+.||.|++|+
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS-~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS-PNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEec-CCCcEEEecCCCCeeEecc
Confidence 799999999964 468899999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421 299 VLLLT-----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 299 ~~~~~-----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.++.+ .....|..++|+.+|..|.++.
T Consensus 481 ~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 481 TKTGKLVKSYQGTGGIFELCWNAAGDKLGACA 512 (524)
T ss_pred ccchheeEeecCCCeEEEEEEcCCCCEEEEEe
Confidence 98544 4456789999999999888763
No 36
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.1e-25 Score=203.33 Aligned_cols=245 Identities=17% Similarity=0.192 Sum_probs=197.4
Q ss_pred cCCCCcc---ccCCceeEeeeeeCCCC--CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------
Q 017421 93 YSGRGRF---SAADCCHMLSRYLPVNG--PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------------ 155 (372)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------------ 155 (372)
++.+.++ .+.|...+++....... +..+.+|...|-++-|..+...+.+.+.||.+.+|....
T Consensus 153 Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~ 232 (893)
T KOG0291|consen 153 WSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDE 232 (893)
T ss_pred eccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccc
Confidence 3455554 46667777877777666 778899999999999999999999999999999998761
Q ss_pred -----------CeE--------EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeccee-ecccc
Q 017421 156 -----------GWK--------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT-EIHDG 215 (372)
Q Consensus 156 -----------~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~ 215 (372)
++. ..+..........+++.+|++..+.|++|-..|...+|++....++....+. .....
T Consensus 233 eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t 312 (893)
T KOG0291|consen 233 EGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILT 312 (893)
T ss_pred cccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeE
Confidence 000 0111112223357999999999999999999999999998776654443332 11111
Q ss_pred ccee---------ccC-----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 017421 216 LDFS---------AAD-----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (372)
Q Consensus 216 ~~~~---------~~~-----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 269 (372)
+.+. ... ..||...+++++++|||+++|+|+.||.|+|||..++-|..++..|+
T Consensus 313 ~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 313 VSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT 392 (893)
T ss_pred EEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCC
Confidence 2222 111 25899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------------------------------------------------
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------------------------------------------------- 300 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------------------------------------------- 300 (372)
..|+.+.|+ ..|+.+++.+-||+|+.||+.
T Consensus 393 s~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 393 SGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL 471 (893)
T ss_pred CceEEEEEE-ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee
Confidence 999999999 999999999999999999984
Q ss_pred -cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 301 -LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 301 -~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
.+.+|.+||.+++|+|+|..|++++ ||.+|++||+...
T Consensus 472 DiLsGHEgPVs~l~f~~~~~~LaS~S------WDkTVRiW~if~s 510 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGSLLASGS------WDKTVRIWDIFSS 510 (893)
T ss_pred ehhcCCCCcceeeEEccccCeEEecc------ccceEEEEEeecc
Confidence 1338999999999999999999998 9999999998776
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=182.25 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=174.3
Q ss_pred ccCCceeEeeeeeCCCC---Cccc-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421 100 SAADCCHMLSRYLPVNG---PWPV-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (372)
.+.++.+++|....... ...+ .+|+..|+.++|+|.|++|++++.|.++.||.-..+ .......+.+|...|.++
T Consensus 33 cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 33 CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-EFECVATLEGHENEVKCV 111 (312)
T ss_pred ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-ceeEEeeeeccccceeEE
Confidence 56677788887764221 1112 479999999999999999999999999999997755 333345578999999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (372)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd 255 (372)
+|+++|++||+++.|..|.||.+..+.......... +|+..|..+.|+|...+|++++.|.+|++|+
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-------------~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-------------EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-------------cccccccEEEEcCCcceeEEeccCCeEEEEe
Confidence 999999999999999999999998665433333333 4777999999999999999999999999998
Q ss_pred CC---CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--cccCCCCCeeEEEeccCCCeEEEE-eeeeE
Q 017421 256 LE---ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--LLTRSINPCNKYLFNPCNKYLIIY-LILVI 329 (372)
Q Consensus 256 ~~---~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~v~~~~~s~~g~~l~~~-~~~~~ 329 (372)
-. ...+.+++.+|...|.+++|+ +.|..|++++.|++++||-.. ....|...++.+.|. +| .|+++ .++.+
T Consensus 179 ~~~dddW~c~~tl~g~~~TVW~~~F~-~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i 255 (312)
T KOG0645|consen 179 DEDDDDWECVQTLDGHENTVWSLAFD-NIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NG-VIASGGGDDAI 255 (312)
T ss_pred ecCCCCeeEEEEecCccceEEEEEec-CCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-cc-ceEeccCCCEE
Confidence 76 346899999999999999999 999999999999999999955 334677899999998 54 45544 44444
Q ss_pred EE
Q 017421 330 SI 331 (372)
Q Consensus 330 ~~ 331 (372)
.+
T Consensus 256 ~l 257 (312)
T KOG0645|consen 256 RL 257 (312)
T ss_pred EE
Confidence 44
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=3e-26 Score=192.81 Aligned_cols=232 Identities=15% Similarity=0.103 Sum_probs=188.2
Q ss_pred ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
...+.|+.-.+|+.-....+..+.+|+..|.++.|+.+|.+||+|..+|.|+||...++....... ..-..+.=+.|
T Consensus 80 aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~---~e~~dieWl~W 156 (399)
T KOG0296|consen 80 ATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD---QEVEDIEWLKW 156 (399)
T ss_pred EecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee---cccCceEEEEe
Confidence 346777888899999999999999999999999999999999999999999999999886555433 22234777899
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
+|.+..|+.|+.||.+.+|.+..+....... ||..++++=.|.|+|+.++++..||+|++||+.
T Consensus 157 Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~----------------Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 157 HPRAHILLAGSTDGSVWMWQIPSQALCKVMS----------------GHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred cccccEEEeecCCCcEEEEECCCcceeeEec----------------CCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 9999999999999999999998864433333 688899999999999999999999999999999
Q ss_pred CCeEEEEeec------C---------------------------------------------CCCeEEEEEeC--CCCCE
Q 017421 258 ANKLSLRILA------H---------------------------------------------TSDVNTVCFGD--ESGHL 284 (372)
Q Consensus 258 ~~~~~~~~~~------~---------------------------------------------~~~v~~~~~sp--~~~~~ 284 (372)
+++++..+.. + ...+.|+.+.| ..=.+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 9988776541 1 00111222221 23346
Q ss_pred EEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421 285 IYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 285 l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
.|+|+-||+|.|||+.. .-.|..+|+.+.|-+ ..+|+++. .++.|+.||+.+|+.+..+.||..
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c------~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC------ANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred hhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec------cCceEEeeeccccceEEEEecCch
Confidence 78899999999999863 337889999999999 56666664 599999999999999999999954
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.8e-25 Score=195.99 Aligned_cols=229 Identities=23% Similarity=0.239 Sum_probs=193.5
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
...+..+.+|+.........+..|...+..+.|+|++++|++++.+|.|++|++.++..... ...|...+.++.|+|
T Consensus 27 ~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~ 103 (289)
T cd00200 27 GSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYVSSVAFSP 103 (289)
T ss_pred eecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE---EeccCCcEEEEEEcC
Confidence 33467788888887776777888999999999999999999999999999999998654444 346666899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+++++++++.++.|.+||+.+++...... .|...+.++.|+|++.++++++.++.|++||++++
T Consensus 104 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 104 DGRILSSSSRDKTIKVWDVETGKCLTTLR----------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred CCCEEEEecCCCeEEEEECCCcEEEEEec----------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 98888888889999999998766533322 35568999999999999998888999999999999
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
+....+..|...+.++.|+ ++++.+++++.|+.|++||++. +..+...+.++.|+|++.+++++. .|
T Consensus 168 ~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~ 240 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS------ED 240 (289)
T ss_pred ccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc------CC
Confidence 8888888898899999999 8998999999999999999973 236777999999999988888774 48
Q ss_pred ceEEEeecccceEEEEEeeeE
Q 017421 334 PNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 334 ~~i~lw~~~~~~~~~~~~~h~ 354 (372)
+.+++|+..+++.+..+.+|.
T Consensus 241 ~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 241 GTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred CcEEEEEcCCceeEEEccccC
Confidence 899999999888888887663
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.1e-27 Score=209.77 Aligned_cols=214 Identities=16% Similarity=0.096 Sum_probs=190.2
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+..++.+|.+++|+|...+++++-.+|.|.||+.++...+..... ..-||.+..|-+..+++++|+.|..|+||+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEe
Confidence 34556889999999999999999999999999999999877766433 334899999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEE
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~ 276 (372)
..+++....+. .|...|++++.+|...+++++++|-+|++||.+. ..+.+++.+|+..|.+++
T Consensus 84 ynt~ekV~~Fe----------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 84 YNTGEKVKTFE----------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred cccceeeEEee----------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 99988655544 4777999999999999999999999999999975 468899999999999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC--CeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN--KYLIIYLILVISIYSPNILLDNYFLLRTFY 348 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~ 348 (372)
|+|.|.+.+++++-|++|+||.+. ++++|...|+++.|-+-| .+|++++ -|.++++||+++.++++
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga------DD~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA------DDLTIKVWDYQTKSCVQ 221 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC------CCceEEEeecchHHHHH
Confidence 999999999999999999999996 677999999999998866 4888886 37899999999999999
Q ss_pred EEeeeEEE
Q 017421 349 SFMVHILF 356 (372)
Q Consensus 349 ~~~~h~~~ 356 (372)
.+.||+-.
T Consensus 222 TLeGHt~N 229 (794)
T KOG0276|consen 222 TLEGHTNN 229 (794)
T ss_pred Hhhccccc
Confidence 99999643
No 41
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=210.18 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=198.0
Q ss_pred cccceeeeecccCccCC-----CC---ccccCCceeEeeeeeCCCC----CccccCCCCceEEEEECCCC-CEEEEEeCC
Q 017421 79 PVSTVKMLAGREGNYSG-----RG---RFSAADCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSADG-SLFVAGFQA 145 (372)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 145 (372)
+.....++.||....-. .+ ...+.|+..++|++..... .....+|.+.|.+++++..+ .+|++++.|
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 33445577888774322 22 2367788999998833322 23457999999999998755 688999999
Q ss_pred CcEEEEeCCCCeEEEEe------eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee
Q 017421 146 SQIRIYDVERGWKIQKD------ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 219 (372)
.++++|++...+..... .....|...|.+++++|+.++|++|+.|.+.++|+++.........
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs----------- 502 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS----------- 502 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-----------
Confidence 99999999863221111 1235778889999999999999999999999999999666554444
Q ss_pred ccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 220 AADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 220 ~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
||...|.++.|+|..+.++|+|.|++|+||.+.+..++.++.+|...|..+.|- .+|..|++++.||-|++|++
T Consensus 503 -----GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~-~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 503 -----GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFI-RNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred -----CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeee-eCCcEEEeccCCCcEEEEec
Confidence 788899999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred c------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 300 L------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 300 ~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
+ ++..|...|+++.-+|.+.+++++. -|+.|.+|.=
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg------~Dg~i~~wkD 618 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLDMFVTGG------GDGRIIFWKD 618 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccceeEecC------CCeEEEEeec
Confidence 7 5679999999999999999888775 4888888853
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-27 Score=188.34 Aligned_cols=217 Identities=14% Similarity=0.124 Sum_probs=182.3
Q ss_pred ccCCceeEeeeeeCCCCC-ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 100 SAADCCHMLSRYLPVNGP-WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
.++|..+++|+..+...| ..++.|...|.++.|++ +++.+++++.|++|++|+...+..+.. ..+|..-|....|
T Consensus 79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T---f~gh~~~Iy~a~~ 155 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT---FNGHNSCIYQAAF 155 (311)
T ss_pred EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe---ecCCccEEEEEec
Confidence 667778889886655544 56789999999999999 566788899999999999988877766 7789999999999
Q ss_pred CC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 017421 178 SP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD 255 (372)
Q Consensus 178 ~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd 255 (372)
+| ..+.+++++.|+.+++||++.......+. .|...|.++.|+. +.+.++||+.|+.|+.||
T Consensus 156 sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~----------------ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wD 219 (311)
T KOG0277|consen 156 SPHIPNLFASASGDGTLRLWDVRSPGKFMSIE----------------AHNSEILCCDWSKYNHNVLATGGVDNLVRGWD 219 (311)
T ss_pred CCCCCCeEEEccCCceEEEEEecCCCceeEEE----------------eccceeEeecccccCCcEEEecCCCceEEEEe
Confidence 99 78899999999999999998764332222 3667899999987 557889999999999999
Q ss_pred CCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccC-CCeEEEEee
Q 017421 256 LEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPC-NKYLIIYLI 326 (372)
Q Consensus 256 ~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~-g~~l~~~~~ 326 (372)
++.- .++..+.+|.-.|..++|||....+|++++.|-++||||.. +...|+.-|..+.|++- +.++|...
T Consensus 220 ir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g- 298 (311)
T KOG0277|consen 220 IRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG- 298 (311)
T ss_pred hhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc-
Confidence 9874 47888899999999999998888999999999999999986 34478888999999985 44566555
Q ss_pred eeEEEeeceEEEeec
Q 017421 327 LVISIYSPNILLDNY 341 (372)
Q Consensus 327 ~~~~~~d~~i~lw~~ 341 (372)
||..+++|+-
T Consensus 299 -----WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 -----WDELLYVWNP 308 (311)
T ss_pred -----cccceeeecc
Confidence 9999999984
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=8.9e-27 Score=211.86 Aligned_cols=239 Identities=17% Similarity=0.100 Sum_probs=194.5
Q ss_pred cCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-EEeeecccCCcceEEEEECC
Q 017421 101 AADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI-QKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~ 179 (372)
.....++++ ..+......+.+|...|.+++...+|.+|++|+.|.++++|.++++... .......+|...|.+++++.
T Consensus 343 TNs~~lr~y-~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 343 TNSPELRLY-TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred eCCCceEEE-ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence 333455555 4455556688999999999997677899999999999999998554221 22223568888999999977
Q ss_pred C-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 180 D-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 180 ~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
. ..+|++++.|+++++|++...+.......... ......|...|++++.+|+.++|+||+.|.+.+||++..
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~-------~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~ 494 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC-------RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ 494 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehh-------hHHHHhhcccccceEecCCCceEEecccccceeeecccC
Confidence 4 46789999999999999986332111111000 001124778999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
.....++.+|...|.|+.|+ +..+.++|+|.|++|+||.+. ++.+|...|..+.|-.+|+.|+++. .
T Consensus 495 ~~l~~vLsGH~RGvw~V~Fs-~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~------a 567 (775)
T KOG0319|consen 495 LRLLGVLSGHTRGVWCVSFS-KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG------A 567 (775)
T ss_pred ceEEEEeeCCccceEEEEec-cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc------C
Confidence 99999999999999999999 999999999999999999987 5668999999999999999998875 6
Q ss_pred eceEEEeecccceEEEEEeeeE
Q 017421 333 SPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 333 d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
||-|++|++.+...+.++.+|.
T Consensus 568 dGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred CCcEEEEeccchhhhhhhhhcc
Confidence 9999999999999999998883
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.3e-25 Score=196.85 Aligned_cols=211 Identities=26% Similarity=0.304 Sum_probs=178.8
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+.+|..+|.+++|+|++++|++++.+|.|.+|++.++..... ...|...+..+.|+|+++.+++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT---LKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE---EecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 34678999999999999999999999999999999987754333 446667788999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
+.+++...... .|...+.++.|+|+++++++++.++.|.+||+++++....+..|...+.+++|
T Consensus 80 ~~~~~~~~~~~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 80 LETGECVRTLT----------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred cCcccceEEEe----------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 98764432222 35558999999999888888888999999999999888888889999999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
+ +++.++++++.|+.|++||++. +..+...+.++.|+|+++.++++. .|+.+++||..+++.+..+.
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS------SDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec------CCCcEEEEECCCCceecchh
Confidence 9 8788999888899999999873 336677899999999998888775 38889999998888877775
Q ss_pred eeE
Q 017421 352 VHI 354 (372)
Q Consensus 352 ~h~ 354 (372)
.|.
T Consensus 217 ~~~ 219 (289)
T cd00200 217 GHE 219 (289)
T ss_pred hcC
Confidence 553
No 45
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=5.5e-26 Score=195.16 Aligned_cols=233 Identities=19% Similarity=0.192 Sum_probs=191.0
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
..+.|+...+.+....+-...+.||...|+.+.++|+...+++++.|..|+||........ .....|..+|+.+..+
T Consensus 236 TGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~---~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP---TSSRPHEEPVTGLSLH 312 (506)
T ss_pred ecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc---cccccccccceeeeec
Confidence 3555667788887777778889999999999999999999999999999999998765432 2356888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
|.|.+|++++.|+...+.|++++......... +..-.+++.+|+|||..|.+|+.||.|+|||+.+
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------------~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--------------TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeec--------------cccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 99999999999999999999999875544321 0112689999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEe-eeeEE
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYL-ILVIS 330 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~-~~~~~ 330 (372)
+..+..|.+|.++|..++|+ .+|-+|++++.|+.|++||+|.++ ....++.++.|.+.|++|++++ +-.+.
T Consensus 379 ~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 99999999999999999999 999999999999999999999554 3334799999999999998873 11222
Q ss_pred EeeceEEEeecccceEEEEEeeeE
Q 017421 331 IYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 331 ~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
+++..-+ ..+++..+..|.
T Consensus 458 ~~~k~~k-----~W~~~~~~~~~s 476 (506)
T KOG0289|consen 458 ICKKKTK-----SWTEIKELADHS 476 (506)
T ss_pred EEecccc-----cceeeehhhhcc
Confidence 2222222 445666666665
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=179.86 Aligned_cols=248 Identities=17% Similarity=0.179 Sum_probs=204.3
Q ss_pred cccceeeeecccCc-----cCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEE
Q 017421 79 PVSTVKMLAGREGN-----YSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (372)
Q Consensus 79 ~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 150 (372)
|.+..+++..++.. |..++.+ .+.++.+++|+...........+|...|..++.+.|...|++|+.|..+.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 33344445554442 3334433 677889999999999988999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421 151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (372)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 230 (372)
||+.+++..++ +.+|.+.|..+.|+.+...+++|+.|..+++||.++....+++.+.+.. ..|
T Consensus 86 wDV~TGkv~Rr---~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--------------D~V 148 (307)
T KOG0316|consen 86 WDVNTGKVDRR---FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--------------DGV 148 (307)
T ss_pred EEcccCeeeee---cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--------------Cce
Confidence 99999988777 7799999999999999999999999999999999988776665544332 368
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cC
Q 017421 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TR 304 (372)
Q Consensus 231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~ 304 (372)
.++..+ +..|++|+.||+++.||++.|+......+ .+|++++|+ ++++..+.++.|++|++.|-.+. ++
T Consensus 149 ~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s-~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 149 SSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFS-KDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred eEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEec-CCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 888775 67899999999999999999987655544 589999999 99999999999999999998753 35
Q ss_pred CCCCe--eEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421 305 SINPC--NKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 305 ~~~~v--~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
|.+.- ...+++....++++++ .|+.+.+||+...+.+..+.+|.
T Consensus 224 hkn~eykldc~l~qsdthV~sgS------EDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGS------EDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred cccceeeeeeeecccceeEEecc------CCceEEEEEeccceeeeeeccCC
Confidence 65543 3456677777888886 69999999999999998887774
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.4e-25 Score=224.07 Aligned_cols=211 Identities=17% Similarity=0.216 Sum_probs=170.0
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEE
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVH 194 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 194 (372)
+..|.+.|.+++|+|+|++||+|+.|+.|+||++... ...........+...+.+++|+| ++.+|++++.||.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4568999999999999999999999999999997542 11000001112234689999987 578999999999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (372)
+||+.+++...... +|...|++++|+| ++.+|++|+.|+.|++||++++..+..+..+ ..|.
T Consensus 559 lWd~~~~~~~~~~~----------------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 559 VWDVARSQLVTEMK----------------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEECCCCeEEEEec----------------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 99999876543332 5778999999997 7899999999999999999999888888754 6899
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc---
Q 017421 274 TVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL--- 343 (372)
Q Consensus 274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~--- 343 (372)
++.|+++++.+|++|+.||.|++||++. +.+|...|..+.|. ++.+|++++ .|++|++||+..
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s------~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS------TDNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE------CCCEEEEEeCCCCcc
Confidence 9999767899999999999999999973 23688899999997 567777765 689999999864
Q ss_pred ---ceEEEEEeeeE
Q 017421 344 ---LRTFYSFMVHI 354 (372)
Q Consensus 344 ---~~~~~~~~~h~ 354 (372)
.+.+..+.+|.
T Consensus 695 ~~~~~~l~~~~gh~ 708 (793)
T PLN00181 695 GINETPLHSFMGHT 708 (793)
T ss_pred ccCCcceEEEcCCC
Confidence 35677777774
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-27 Score=187.43 Aligned_cols=211 Identities=16% Similarity=0.165 Sum_probs=173.3
Q ss_pred CCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCC
Q 017421 123 TTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 123 ~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 200 (372)
-...+..++|+++ .+.+++++.||++++||+.... ..+...++|...|.++.|++ +++.+++++.|++|++|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCC--cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 4678999999995 5678889999999999965432 23344778999999999999 566788889999999999987
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 279 (372)
+....... ||...|....|+|. .+++++++.|+.+++||++..-....+..|...+.|+.|+.
T Consensus 137 ~~Sv~Tf~----------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 137 PNSVQTFN----------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSK 200 (311)
T ss_pred CcceEeec----------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccc
Confidence 77655543 68889999999994 68999999999999999987554455889999999999997
Q ss_pred CCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccc-eEEEEE
Q 017421 280 ESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLL-RTFYSF 350 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~-~~~~~~ 350 (372)
-+.+.++||+.|+.|+.||++.+ .+|.-.|..++|||... .|++++ ||-++++||.... ..+...
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas------YDmT~riw~~~~~ds~~e~~ 274 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS------YDMTVRIWDPERQDSAIETV 274 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhcc------ccceEEecccccchhhhhhh
Confidence 78899999999999999999854 37888999999999865 555666 9999999999844 344555
Q ss_pred eeeEEEe
Q 017421 351 MVHILFS 357 (372)
Q Consensus 351 ~~h~~~~ 357 (372)
.-|+.|.
T Consensus 275 ~~HtEFv 281 (311)
T KOG0277|consen 275 DHHTEFV 281 (311)
T ss_pred hccceEE
Confidence 5666665
No 49
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5.6e-27 Score=194.53 Aligned_cols=251 Identities=17% Similarity=0.174 Sum_probs=212.8
Q ss_pred ccCCCCcc---ccCCceeEeeeeeCCCCCc--------cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 017421 92 NYSGRGRF---SAADCCHMLSRYLPVNGPW--------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ 160 (372)
Q Consensus 92 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 160 (372)
.|++++.+ .+.|..+.+|++..+.-.. .+.-+..+|.|++|+.|...+|+|+.||.|+||.+++|.+++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 57888876 5566677799988765332 234578999999999999999999999999999999998887
Q ss_pred EeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC
Q 017421 161 KDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR 240 (372)
Q Consensus 161 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~ 240 (372)
.+ ...|...|+++.|+.|+..+++++.|-++++--+++|++...++ ||++.|+...|.+||+
T Consensus 300 rF--drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------GHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 300 RF--DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------GHSSYVNEATFTDDGH 361 (508)
T ss_pred Hh--hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------CccccccceEEcCCCC
Confidence 63 34777789999999999999999999999999999999865554 8999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCee
Q 017421 241 ELVAGSSDDCIYVYDLEANKLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCN 310 (372)
Q Consensus 241 ~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~ 310 (372)
++++++.||+|++|+.++.+|+.+++. ..-+|.++-.-|.+...++++...++|.|.++. ..+...+...
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence 999999999999999999999988874 345788888887888899999999999998875 2334556677
Q ss_pred EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee-EEEeeecccCCcc
Q 017421 311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH-ILFSGYLHNDHNH 366 (372)
Q Consensus 311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h-~~~~~~~~~~~~~ 366 (372)
+.+.+|.|.++++.. .|+.++.+.+.+|+..+.+.+| ....|--|+++-+
T Consensus 442 ~~~lSpkGewiYcig------ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIG------EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred EEEecCCCcEEEEEc------cCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 888999999998775 6899999999999999999999 4455777766543
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=5.1e-25 Score=193.45 Aligned_cols=244 Identities=16% Similarity=0.146 Sum_probs=191.4
Q ss_pred CccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421 97 GRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (372)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (372)
..+....+.+++..+........+..|..+++...|+|.|-++|+|...|+|+|||......+.+.. .....++|..++
T Consensus 32 ~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKne-f~v~aG~I~Di~ 110 (603)
T KOG0318|consen 32 NILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNE-FQVLAGPIKDIS 110 (603)
T ss_pred eEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeee-eeecccccccce
Confidence 3446666777777777777788889999999999999999999999999999999987754444322 334445899999
Q ss_pred ECCCCCEEEEEeCC----CeEEEEECCCCc------eeeecc----------eeeccc--ccceecc-------CCCCcc
Q 017421 177 LSPDQRHLVYASMS----PIVHIVDVGSGT------MESLAN----------VTEIHD--GLDFSAA-------DDGGYS 227 (372)
Q Consensus 177 ~~~~~~~l~~~~~d----g~i~vwd~~~~~------~~~~~~----------~~~~~~--~~~~~~~-------~~~~h~ 227 (372)
|++++++|+..+.. |.+.+||..+.. ...+.. .....+ .++|-.. ....|.
T Consensus 111 Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hs 190 (603)
T KOG0318|consen 111 WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHS 190 (603)
T ss_pred eCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccc
Confidence 99999999887653 457788864311 111100 000000 0111111 124688
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---
Q 017421 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--- 301 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--- 301 (372)
.-|+|+.|+|||.++++.+.||+|.+||-.+++.+..+. +|.+.|.+++|+ ||+..|++++.|.+++|||+.+
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccce
Confidence 899999999999999999999999999999999999987 899999999999 9999999999999999999741
Q ss_pred ----------------------------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421 302 ----------------------------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPN 335 (372)
Q Consensus 302 ----------------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~ 335 (372)
..+|...|+++..+|++++|++++ ||+.
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs------yDG~ 343 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS------YDGH 343 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec------cCce
Confidence 227889999999999999999998 9999
Q ss_pred EEEeecccceEEE
Q 017421 336 ILLDNYFLLRTFY 348 (372)
Q Consensus 336 i~lw~~~~~~~~~ 348 (372)
|.-|+..+|..-+
T Consensus 344 I~~W~~~~g~~~~ 356 (603)
T KOG0318|consen 344 INSWDSGSGTSDR 356 (603)
T ss_pred EEEEecCCccccc
Confidence 9999998876543
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.3e-26 Score=203.28 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=189.7
Q ss_pred eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 184 (372)
.+-+|+.....-...+.-..-+|++..|-+..+++++|+.|..|+||+.++++.+.. +..|...|.+++.+|...++
T Consensus 36 ~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~---FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 36 DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT---FEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEE---eeccccceeeeeecCCCCeE
Confidence 446777776666666777788999999999999999999999999999999987776 77899999999999999999
Q ss_pred EEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEE
Q 017421 185 VYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLS 262 (372)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~ 262 (372)
++++.|-.|++||.+..-. .+.+. ||...|.+++|+| |.+.+++++.|++|++|.+.+..+.
T Consensus 113 LtsSDDm~iKlW~we~~wa~~qtfe----------------GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENEWACEQTFE----------------GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred EecCCccEEEEeeccCceeeeeEEc----------------CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence 9999999999999976532 22222 6888999999999 5689999999999999999999999
Q ss_pred EEeecCCCCeEEEEEeC-CCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421 263 LRILAHTSDVNTVCFGD-ESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPN 335 (372)
Q Consensus 263 ~~~~~~~~~v~~~~~sp-~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~ 335 (372)
.++.+|...|+|+.|-+ +|..+|++|+.|.+|+|||.. ++.+|...|..+.|+|.-..+++|+ -|++
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs------EDGT 250 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS------EDGT 250 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec------CCcc
Confidence 99999999999999972 234599999999999999987 6779999999999999999999986 5778
Q ss_pred EEEeecccceEEEEE
Q 017421 336 ILLDNYFLLRTFYSF 350 (372)
Q Consensus 336 i~lw~~~~~~~~~~~ 350 (372)
+++|+..|-+....+
T Consensus 251 vriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTL 265 (794)
T ss_pred EEEecCcceehhhhh
Confidence 888877766655444
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.7e-27 Score=197.19 Aligned_cols=233 Identities=20% Similarity=0.205 Sum_probs=192.4
Q ss_pred ceeeeecccCc-----cCCCC-ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 017421 82 TVKMLAGREGN-----YSGRG-RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER 155 (372)
Q Consensus 82 ~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 155 (372)
..+.|.||.+. |.... ...++|.++++|++...+....+.+|...|..+.|+ ..++++++.|.++.|||+..
T Consensus 229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 45566666653 22222 227778899999999999999999999999999998 66899999999999999987
Q ss_pred CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEE
Q 017421 156 GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKF 235 (372)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 235 (372)
...+.....+.+|...|..+.|+ .+++++++.|.+|++|++.++.+..... ||.-.|-|+.+
T Consensus 307 ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~----------------gHkRGIAClQY 368 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN----------------GHKRGIACLQY 368 (499)
T ss_pred chHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh----------------cccccceehhc
Confidence 65444344567999999999995 5699999999999999999998876665 78889988886
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------------
Q 017421 236 STDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------------- 301 (372)
Q Consensus 236 sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------------- 301 (372)
. ++++++|+.|.+|++||+..|.+++.+.+|+.-|.|+.|. .+.+++|+.||+|++||+.+
T Consensus 369 r--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~ 443 (499)
T KOG0281|consen 369 R--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR 443 (499)
T ss_pred c--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHH
Confidence 4 8999999999999999999999999999999999999995 57899999999999999863
Q ss_pred -ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 302 -LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 302 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
+..|.+.|..+.|.. ..+++++ .|.+|.+||+.++-+-
T Consensus 444 ~lv~hsgRVFrLQFD~--fqIvsss------HddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 444 TLVEHSGRVFRLQFDE--FQIISSS------HDDTILIWDFLNGPPS 482 (499)
T ss_pred hhhhccceeEEEeecc--eEEEecc------CCCeEEEEEcCCCCcc
Confidence 236777888888854 3444443 6899999998877543
No 53
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=6.5e-25 Score=177.70 Aligned_cols=210 Identities=16% Similarity=0.204 Sum_probs=186.5
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
+|..+.+|..+++-+.++.+|.+|++++.|.++.||-..+|+.+-. ..+|.+.|+++..+.+.+++++|+.|.++++
T Consensus 2 rpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt---y~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT---YDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred CccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee---ecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 3567899999999999999999999999999999999888877776 7799999999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECC-------CCeEEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLE-------ANKLSL 263 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~-------~~~~~~ 263 (372)
||+++|+++...... .+|..+.|+++|++++..+++ +.|.++|++ ..++..
T Consensus 79 WDv~tGk~la~~k~~-----------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 79 WDVETGKQLATWKTN-----------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred EEcCCCcEEEEeecC-----------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 999999987665532 389999999999988876654 569999998 345678
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421 264 RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI 336 (372)
Q Consensus 264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i 336 (372)
.+..+...++.+-|. |-++.|++|..||.|..||+++. +.|...|+.++++||..++++++ -|.+-
T Consensus 142 kI~t~~skit~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s------~Dtta 214 (327)
T KOG0643|consen 142 KIPTPDSKITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS------KDTTA 214 (327)
T ss_pred EecCCccceeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc------cCccc
Confidence 888888999999999 99999999999999999999854 47888999999999999999986 68999
Q ss_pred EEeecccceEEEEEee
Q 017421 337 LLDNYFLLRTFYSFMV 352 (372)
Q Consensus 337 ~lw~~~~~~~~~~~~~ 352 (372)
++||+.+...++.|..
T Consensus 215 kl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTT 230 (327)
T ss_pred eeeeccceeeEEEeee
Confidence 9999999998887743
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.4e-24 Score=216.77 Aligned_cols=229 Identities=18% Similarity=0.179 Sum_probs=180.5
Q ss_pred cCCCCcc---ccCCceeEeeeeeCCC-------CCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 017421 93 YSGRGRF---SAADCCHMLSRYLPVN-------GPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQK 161 (372)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 161 (372)
|++.+.+ .+.+..+++|+..... .+.....+...|.+++|+| ++.+|++++.||+|++||+.++..+..
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 4555543 5566778888754211 1111223456899999987 578999999999999999998866554
Q ss_pred eeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc-CCC
Q 017421 162 DILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS-TDG 239 (372)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s-p~~ 239 (372)
..+|...|++++|+| ++.+|++|+.|+.|++||++++....... +...+.++.|+ +++
T Consensus 571 ---~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~~v~~~~~~g 630 (793)
T PLN00181 571 ---MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANICCVQFPSESG 630 (793)
T ss_pred ---ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeEEEEEeCCCC
Confidence 567888999999997 78999999999999999999876543322 11368899995 578
Q ss_pred CEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------------cccCCC
Q 017421 240 RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------------LLTRSI 306 (372)
Q Consensus 240 ~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------------~~~~~~ 306 (372)
.+|++|+.|+.|++||+++.. .+..+.+|...|.++.|. ++..|++++.|++|++||++ ++.+|.
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 999999999999999998765 566778999999999996 67899999999999999986 234678
Q ss_pred CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421 307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS 349 (372)
Q Consensus 307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~ 349 (372)
..+..++|+|++.+|++++ .|+.+++|+......+.+
T Consensus 709 ~~i~~v~~s~~~~~lasgs------~D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGS------ETNEVFVYHKAFPMPVLS 745 (793)
T ss_pred CCeeEEEEcCCCCEEEEEe------CCCEEEEEECCCCCceEE
Confidence 8889999999999999986 688888888766554433
No 55
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.7e-26 Score=186.25 Aligned_cols=216 Identities=15% Similarity=0.141 Sum_probs=174.8
Q ss_pred EeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe------------EEEEeeecccCCcceE
Q 017421 107 MLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW------------KIQKDILAKSLRWTVT 173 (372)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~ 173 (372)
++..+.-.+.......|.+.|+++.+.+ .|+++++|+.||.|.|||++... ++.......+|+..|.
T Consensus 26 Ril~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is 105 (397)
T KOG4283|consen 26 RILSLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS 105 (397)
T ss_pred hhheeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence 3344444555566678999999999988 78999999999999999998642 1111122456788999
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CCEEEEEeCCC
Q 017421 174 DTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GRELVAGSSDD 249 (372)
Q Consensus 174 ~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~~l~s~s~dg 249 (372)
++.|.| |..++.+++.|.+++|||.++.+....++.. ..|.+-+|+|- ..++|+|..+-
T Consensus 106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-----------------~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-----------------GKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred eeEEeeecCceeecccccceEEEeecccceeeEEeecC-----------------ceeehhhcChhhhcceEEEEecCCC
Confidence 999999 7778889999999999999988765554432 36777788873 45788999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------------------cCCCCC
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------------------TRSINP 308 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------------------~~~~~~ 308 (372)
.|++-|+.+|...+++.+|...|.++.|+|...-.|++|+.||.|++||++.. ..|.+.
T Consensus 169 ~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 169 QVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred cEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 99999999999999999999999999999666667899999999999999721 156778
Q ss_pred eeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 309 CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 309 v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
|.+++|+.+|.++++.. -|..+++|+...|+
T Consensus 249 vngla~tSd~~~l~~~g------td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCG------TDDRIRVWNMESGR 279 (397)
T ss_pred eeeeeecccchhhhhcc------CccceEEeecccCc
Confidence 99999999999998774 48889999988775
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=7.4e-26 Score=191.34 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=188.5
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEe-eecccCCcceEEE
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDT 175 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~ 175 (372)
++-|...++|.. .+.....+.+|.++|.+++|.... ..|++++.|.++++|..+.+...... ....+|...|.++
T Consensus 121 gsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 121 GSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV 199 (423)
T ss_pred eecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence 334445555553 455677889999999988885433 45999999999999999887544332 2245899999999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeecceee---------cccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTE---------IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
+..+++..+++|+.|..|++|+..+........... ...+.....-...||..+|.++.|++ ...+++++
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~S 278 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVS 278 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeec
Confidence 999999999999999999999943222111110000 00000000011248999999999988 67899999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---------ccCCCCCeeEEEeccC
Q 017421 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---------LTRSINPCNKYLFNPC 317 (372)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~v~~~~~s~~ 317 (372)
.|.+|+.||+.++....++.+ .....|+.++ +..++|++|+.|..|++||.|+ +.+|.+.|.++.|+|.
T Consensus 279 wDHTIk~WDletg~~~~~~~~-~ksl~~i~~~-~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~ 356 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLTT-NKSLNCISYS-PLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPT 356 (423)
T ss_pred ccceEEEEEeecccceeeeec-CcceeEeecc-cccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCC
Confidence 999999999999998888774 4688999999 8999999999999999999983 4489999999999999
Q ss_pred CCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeee
Q 017421 318 NKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVH 353 (372)
Q Consensus 318 g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h 353 (372)
..+++++ ..||++++|||+.+.+ +++...+|
T Consensus 357 ~~~~~~S-----~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 357 NEFQLVS-----GSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CceEEEE-----EecCCeEEEEEeccCCCcceeeccC
Confidence 8776654 2289999999999998 89999888
No 57
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.6e-26 Score=193.17 Aligned_cols=220 Identities=19% Similarity=0.240 Sum_probs=186.0
Q ss_pred eCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421 112 LPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (372)
Q Consensus 112 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 191 (372)
.|.+....+..|...|+-+.||++|++||+++.|.+..||++.....+.-.....+|..+|..+.|+||.+++++++.+.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 45566678899999999999999999999999999999999877655544555778999999999999999999999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC-CC
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH-TS 270 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~ 270 (372)
.+.+||..+|........ ++...+.+++|.|||..+++|+.|+++..||++. +....+.+- ..
T Consensus 292 ~~~lwDv~tgd~~~~y~~---------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~ 355 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS---------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDP 355 (519)
T ss_pred heeeccCCcchhhhhccc---------------CcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccc
Confidence 999999999987554431 2446899999999999999999999999999984 334444432 24
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
.|.+++.+ +||+++++.+.|..|++++..+ +-....+|++++.|.+|+++++.. -+..+.+||+...+
T Consensus 356 ~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL------~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 356 KVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNL------QDQEIHLWDLEENK 428 (519)
T ss_pred eeEEEEEc-CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEc------ccCeeEEeecchhh
Confidence 68999999 9999999999999999999863 335667999999999999987764 68999999999888
Q ss_pred EEEEEeeeE
Q 017421 346 TFYSFMVHI 354 (372)
Q Consensus 346 ~~~~~~~h~ 354 (372)
.++.|.||.
T Consensus 429 lv~kY~Ghk 437 (519)
T KOG0293|consen 429 LVRKYFGHK 437 (519)
T ss_pred HHHHhhccc
Confidence 888888874
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-26 Score=208.40 Aligned_cols=194 Identities=19% Similarity=0.226 Sum_probs=157.0
Q ss_pred cc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----------------------------E--E---------
Q 017421 120 VD-QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW----------------------------K--I--------- 159 (372)
Q Consensus 120 ~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~----------------------------~--~--------- 159 (372)
+. .|.+.|+++.||+||++||+|+.|+.|+||.+...+ . +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 45 899999999999999999999999999999876500 0 0
Q ss_pred ------------------EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421 160 ------------------QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (372)
Q Consensus 160 ------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
..+..+.+|.+.|..+.|+.+ ++|++++.|.+|++|++....++..+.
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~------------- 407 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS------------- 407 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence 001123488889999999964 589999999999999999998877775
Q ss_pred CCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 222 DDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 222 ~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
|...|+|++|+| |.+||++|+-||.|+||++...+.+.-.. -..-|++++|. |+|+..+.|+.+|.+++|+..
T Consensus 408 ----HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 ----HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred ----cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEec-cCCceEEEEEeccEEEEEEcc
Confidence 778999999999 67999999999999999999877654444 34789999999 889999999999999999987
Q ss_pred ccc---------------CCCCCeeEEEeccCCC--eEEEEeeeeEEEeec
Q 017421 301 LLT---------------RSINPCNKYLFNPCNK--YLIIYLILVISIYSP 334 (372)
Q Consensus 301 ~~~---------------~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~d~ 334 (372)
-++ .+. .|+++.|.|... .|+++.|..|+|||+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 221 233 799999998644 777775444444443
No 59
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-25 Score=203.71 Aligned_cols=243 Identities=15% Similarity=0.115 Sum_probs=195.4
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.|..+++|++........+.+|-..|+.+.|++.-.+|++++.|.+|+||+..+..++.. ..+|...|.|.+|+|
T Consensus 69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iav---ltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAV---LTGHNHYVMCAQFHP 145 (1202)
T ss_pred cCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEE---EecCceEEEeeccCC
Confidence 44456788999999999999999999999999999999999999999999999999988776 678888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecce--eeccccc-----------ceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANV--TEIHDGL-----------DFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~-----------~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
....+++++.|-+|+|||+..-+....... .....+. ....+-..||.-.|+-++|+|.-.+|++|+
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 999999999999999999975433222111 0000000 011111258999999999999999999999
Q ss_pred CCCeEEEEECCCCe--EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC
Q 017421 247 SDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN 318 (372)
Q Consensus 247 ~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g 318 (372)
+|..|++|.+...+ .+.+..+|.+.|.++-|+ |..+++++.+.|++|+|||+. +++.....-+.++-+|..
T Consensus 226 DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh-p~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH-PHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred CcceeeEEEeccccceeehhhhcccCCcceEEec-CccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence 99999999987554 456677999999999999 999999999999999999986 344556778899999999
Q ss_pred CeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
++++++. |+-+.++.+..-++.+...+-
T Consensus 305 NLfAAgH-------DsGm~VFkleRErpa~~v~~n 332 (1202)
T KOG0292|consen 305 NLFAAGH-------DSGMIVFKLERERPAYAVNGN 332 (1202)
T ss_pred ceeeeec-------CCceEEEEEcccCceEEEcCC
Confidence 9999994 666666666655555444433
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.9e-25 Score=198.64 Aligned_cols=233 Identities=17% Similarity=0.145 Sum_probs=195.7
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCCCC
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPDQR 182 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 182 (372)
..+.+|.............+...|+++.|+++|.+|++|..+|.|.|||..+.+.+.. ..+ |...|-+++|. +.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~---~~~~h~~rvg~laW~--~~ 271 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT---LRGSHASRVGSLAWN--SS 271 (484)
T ss_pred ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc---ccCCcCceeEEEecc--Cc
Confidence 4566777766664444455589999999999999999999999999999988766655 334 88899999998 67
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE
Q 017421 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS 262 (372)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~ 262 (372)
.+.+|+.++.|..+|++..+..... . .+|...|+.+.|++|++++|+|+.|+.+.|||....++.
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~~~--~-------------~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVVST--L-------------QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhhhh--h-------------hcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 8999999999999999987653321 1 168889999999999999999999999999999888899
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeece
Q 017421 263 LRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPN 335 (372)
Q Consensus 263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~ 335 (372)
..+..|...|.+++|+|-...+||+|+ .|+.|++||..+.. .....|.++.|++..+-|+++.+. -++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCC----CCCc
Confidence 999999999999999988899999986 69999999998544 456789999999999888877422 3578
Q ss_pred EEEeecccceEEEEEeeeEEEeeec
Q 017421 336 ILLDNYFLLRTFYSFMVHILFSGYL 360 (372)
Q Consensus 336 i~lw~~~~~~~~~~~~~h~~~~~~~ 360 (372)
|.||++.+.+.+..+.+|..=..||
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYL 437 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEE
Confidence 9999999999999999997653333
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=5.6e-25 Score=186.09 Aligned_cols=216 Identities=16% Similarity=0.156 Sum_probs=176.1
Q ss_pred ccCCceeEeeeeeCCCCC----ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------
Q 017421 100 SAADCCHMLSRYLPVNGP----WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------------------- 156 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------------------- 156 (372)
.+.|+.+++|.+.+.... .+-.||...|-+++..++|..+++|+.|..|+||+....
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE 244 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence 677888999998876643 233599999999999999999999999999999993321
Q ss_pred ---eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEE
Q 017421 157 ---WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSL 233 (372)
Q Consensus 157 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 233 (372)
........+.+|..+|.++.|++ ...+++++.|.+|++||+.++........ ...++++
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-----------------~ksl~~i 306 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-----------------NKSLNCI 306 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-----------------CcceeEe
Confidence 00012345679999999999998 77899999999999999999987544332 2379999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------cc
Q 017421 234 KFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LT 303 (372)
Q Consensus 234 ~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~ 303 (372)
..+|..++|++|+.|..+++||.+++. ..+++.+|.+.|.++.|+|.+...|++|+.|+++++||+|+ +.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 999999999999999999999998764 56778899999999999988888999999999999999994 34
Q ss_pred CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421 304 RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN 340 (372)
Q Consensus 304 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~ 340 (372)
+|...|.++.|+..+ .+++|+ -|++|+++.
T Consensus 387 ~h~DKvl~vdW~~~~-~IvSGG------aD~~l~i~~ 416 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGG-LIVSGG------ADNKLRIFK 416 (423)
T ss_pred cCCceEEEEeccCCc-eEEecc------CcceEEEec
Confidence 889999999998754 555543 355555553
No 62
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.5e-25 Score=177.59 Aligned_cols=247 Identities=15% Similarity=0.214 Sum_probs=184.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 196 (372)
..+++|...|.+++|+.+|..|++|+.|+++.||+++.. .........+|...|-.+.|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 456789999999999999999999999999999999987 3344455678888899999998 66789999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCC------------------------CCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADD------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~ 252 (372)
|++.+++..........-.+.++|... ......++.++|+-++.+++.....|+|.
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 999999865554333222222222211 12334556667766666666555567777
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEe-
Q 017421 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYL- 325 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~- 325 (372)
|.....-+++..+++|.....|+.|+ |+|++||+|+.|..+.+||+. .+..+.-+|..+.|+.||++||+++
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE 251 (313)
T ss_pred EEeccccccccccccCCcceEEEEEC-CCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence 77777777788889999999999999 999999999999999999986 4567889999999999999999986
Q ss_pred eeeEEEee--ceEEEeecccceEEEEEeee--EEEeeecccCCcc
Q 017421 326 ILVISIYS--PNILLDNYFLLRTFYSFMVH--ILFSGYLHNDHNH 366 (372)
Q Consensus 326 ~~~~~~~d--~~i~lw~~~~~~~~~~~~~h--~~~~~~~~~~~~~ 366 (372)
|..|.|.+ .--++|++....+.++-.=| ....-|-+.+++.
T Consensus 252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCC
Confidence 44555543 22367777766655554444 2333555555554
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-24 Score=174.75 Aligned_cols=224 Identities=20% Similarity=0.216 Sum_probs=180.3
Q ss_pred CCCCcc-ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421 94 SGRGRF-SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (372)
Q Consensus 94 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 172 (372)
.++..| .+.|...-+|.....+..-...+|.+.|+|++.+.+.+++++|+.|.++++||+++|+.+... ....+|
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~V 96 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW----KTNSPV 96 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe----ecCCee
Confidence 344445 445567779999999999999999999999999999999999999999999999999777653 334479
Q ss_pred EEEEECCCCCEEEEEeC-----CCeEEEEECCCCceeeecc--eeecccccceeccCCCCccccEEEEEEcCCCCEEEEE
Q 017421 173 TDTSLSPDQRHLVYASM-----SPIVHIVDVGSGTMESLAN--VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG 245 (372)
Q Consensus 173 ~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~ 245 (372)
..+.|+++|++++.... .+.|.++|++......... ..... .+.+.++.+-|.|-+..|++|
T Consensus 97 k~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-----------t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 97 KRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-----------TPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-----------CCccceeeeeecccCCEEEEe
Confidence 99999999998887654 4689999998443110000 00000 133589999999999999999
Q ss_pred eCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------------------
Q 017421 246 SSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------------------- 301 (372)
Q Consensus 246 s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------------------- 301 (372)
..||.|.+||+++++ .+.....|...|+.++++ ++..++++++.|.+-++||.++
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD 244 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEeeecccccceecccccc
Confidence 999999999999985 445556799999999999 9999999999999999999751
Q ss_pred --------------------------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 302 --------------------------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 302 --------------------------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
.++|-++|++++|+|+|+..+++. .|+.+++.
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG------EDG~VR~h 314 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG------EDGYVRLH 314 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC------CCceEEEE
Confidence 226888999999999999998885 46666665
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=4.7e-25 Score=201.05 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=172.7
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeEEE--Ee--eecccCCcceEEEEECCCCCEEEEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQ--KD--ILAKSLRWTVTDTSLSPDQRHLVYA 187 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~l~~~ 187 (372)
...++.|.+.|+.++.+||++.+++|+.|.+|++||+.- +.... .. ...-.....|.++.+|||+++|+++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 345578999999999999999999999999999999752 11101 00 0011223479999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 267 (372)
-.|.+++||-+++-+...... ||.-||.||..+||+++++||+.|.+|++|-++-|.|-..+.+
T Consensus 527 LLdnTVkVyflDtlKFflsLY----------------GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA 590 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLY----------------GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA 590 (888)
T ss_pred eccCeEEEEEecceeeeeeec----------------ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc
Confidence 999999999998876432222 7888999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
|...|.++.|. |...++++++.|+.|+-||-. ++.+|...|++++.+|+|.++++++ .|.+|++|.-
T Consensus 591 HdDSvm~V~F~-P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s------hD~sIRlwE~ 663 (888)
T KOG0306|consen 591 HDDSVMSVQFL-PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS------HDKSIRLWER 663 (888)
T ss_pred ccCceeEEEEc-ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc------CCceeEeeec
Confidence 99999999999 889999999999999999865 5669999999999999999999886 5778888864
Q ss_pred cc
Q 017421 342 FL 343 (372)
Q Consensus 342 ~~ 343 (372)
..
T Consensus 664 td 665 (888)
T KOG0306|consen 664 TD 665 (888)
T ss_pred cC
Confidence 43
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=189.15 Aligned_cols=216 Identities=18% Similarity=0.163 Sum_probs=174.2
Q ss_pred eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEE
Q 017421 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVY 186 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~ 186 (372)
++..........+......|++++|-.||++||+|...|.|+|||..+...++ ....|+.++..+.|+|+ +..+++
T Consensus 52 ly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t~l~s 128 (487)
T KOG0310|consen 52 LYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNTMLVS 128 (487)
T ss_pred EEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCeEEEe
Confidence 33333334444466678899999999999999999999999999955432222 36789999999999994 556778
Q ss_pred EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-eEEEE
Q 017421 187 ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN-KLSLR 264 (372)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~-~~~~~ 264 (372)
|+.|+.+++||+.+........ +|+..|.|.+|+|.. ..+++|+.||.|++||++.. ..+.+
T Consensus 129 ~sDd~v~k~~d~s~a~v~~~l~----------------~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTAYVQAELS----------------GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred cCCCceEEEEEcCCcEEEEEec----------------CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 8889999999999887411111 688899999999964 57899999999999999987 56666
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL 337 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~ 337 (372)
+. |..+|..+.+- |.|..|++++ ...++|||+.+. ..|...|+++++..++..|++++ -|+.++
T Consensus 193 ln-hg~pVe~vl~l-psgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VK 263 (487)
T KOG0310|consen 193 LN-HGCPVESVLAL-PSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVK 263 (487)
T ss_pred ec-CCCceeeEEEc-CCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc------cccceE
Confidence 65 99999999999 8999999985 467999999732 25999999999999999998885 488888
Q ss_pred EeecccceEEEEEe
Q 017421 338 LDNYFLLRTFYSFM 351 (372)
Q Consensus 338 lw~~~~~~~~~~~~ 351 (372)
++|+.+.+.+.++.
T Consensus 264 Vfd~t~~Kvv~s~~ 277 (487)
T KOG0310|consen 264 VFDTTNYKVVHSWK 277 (487)
T ss_pred EEEccceEEEEeee
Confidence 88888888887763
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=200.07 Aligned_cols=230 Identities=18% Similarity=0.122 Sum_probs=193.1
Q ss_pred ccCCceeEeeeeeCCCCCcc-ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 100 SAADCCHMLSRYLPVNGPWP-VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
.+.++.+.+|+......... +.+|.+.|+++++..-++++++|+.|.+++|||..++.+... +.+|...+.++...
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~---l~gh~stv~~~~~~ 300 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS---LQGHTSSVRCLTID 300 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE---ecCCCceEEEEEcc
Confidence 44445566888887777766 899999999999988889999999999999999999988776 66888889888775
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
...+++|+.|.+|++|++.++....+.. +|..+|+++..+ +.++++|+.|++|++||+.+
T Consensus 301 --~~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~ 360 (537)
T KOG0274|consen 301 --PFLLVSGSRDNTVKVWDVTNGACLNLLR----------------GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT 360 (537)
T ss_pred --CceEeeccCCceEEEEeccCcceEEEec----------------cccccEEEEEec--CCEEEEEecCceEEEEEhhh
Confidence 4568888999999999999988766654 578899999988 78999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
++++..+.+|...|+++.+. +. ..+++|+.|++|++||+++. ..|..-+..+. ..+++|+++.
T Consensus 361 ~~cl~sl~gH~~~V~sl~~~-~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~------ 430 (537)
T KOG0274|consen 361 GKCLKSLSGHTGRVYSLIVD-SE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSS------ 430 (537)
T ss_pred ceeeeeecCCcceEEEEEec-Cc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEecc------
Confidence 99999999999999999886 33 89999999999999999866 36666665554 4467787775
Q ss_pred eeceEEEeecccceEEEEEee-eEEEeeeccc
Q 017421 332 YSPNILLDNYFLLRTFYSFMV-HILFSGYLHN 362 (372)
Q Consensus 332 ~d~~i~lw~~~~~~~~~~~~~-h~~~~~~~~~ 362 (372)
.|++|++||+.+++.++.+.+ |....+.|+.
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~ 462 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVGGVSALAL 462 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcccEEEeec
Confidence 699999999999999999988 5433344443
No 67
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.1e-24 Score=188.49 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=168.3
Q ss_pred ccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcceEEEEECC-CCCEEEEEeCCC
Q 017421 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSP 191 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 191 (372)
.++.+|...-++++|++. .-.|++++.|++|++||+..... +.......+|...|..++|++ +...|++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 368899998899999995 45688999999999999975433 445556789999999999999 667889999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-eEEEEeecCC
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHT 269 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~ 269 (372)
.+.|||++++ ........ .+|.++|+|++|+|- +..||+|+.|++|.+||+++- +++.++.+|.
T Consensus 251 ~L~iwD~R~~-~~~~~~~~-------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~ 316 (422)
T KOG0264|consen 251 KLMIWDTRSN-TSKPSHSV-------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHE 316 (422)
T ss_pred eEEEEEcCCC-CCCCcccc-------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCC
Confidence 9999999964 11111111 258889999999995 567799999999999999975 4788899999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------------------ccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------------------LTRSINPCNKYLFNPCNKYLIIYLILVI 329 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 329 (372)
..|.+|.|+|.....|++++.|+.+.|||+.. ..+|...|..+.|+|+..+++++..
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva--- 393 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA--- 393 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec---
Confidence 99999999988889999999999999999962 1278899999999999988776631
Q ss_pred EEeeceEEEeecc
Q 017421 330 SIYSPNILLDNYF 342 (372)
Q Consensus 330 ~~~d~~i~lw~~~ 342 (372)
-|+.+.||+..
T Consensus 394 --eDN~LqIW~~s 404 (422)
T KOG0264|consen 394 --EDNILQIWQMA 404 (422)
T ss_pred --CCceEEEeecc
Confidence 36777777654
No 68
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=9.1e-24 Score=177.97 Aligned_cols=211 Identities=18% Similarity=0.092 Sum_probs=181.2
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
....|..|+..|.+++.+|+.+++++|+.|....+|++.++..... ..+|+..|+++.|+.+|.+|++|..+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e---ltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE---LTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE---ecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 3566889999999999999999999999999999999999974444 7799999999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
|+..++....... . .-..+.-+.|+|.+..|+.|+.||.+.+|.+.+....+.+.+|..++++=
T Consensus 133 ~~~stg~~~~~~~--~--------------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLD--Q--------------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEee--c--------------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 9999988644432 0 11368889999999999999999999999999977788999999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY 348 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~ 348 (372)
.|. |+|+.++++..||+|++|++.+.. ........+.++..+..+..+. -++.+.+-+..+|+.+.
T Consensus 197 ~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~------~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 197 EFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN------SEGVACGVNNGSGKVVN 269 (399)
T ss_pred ccc-CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc------CCccEEEEccccceEEE
Confidence 999 889999999999999999998653 1233567788888888887775 47778888888888887
Q ss_pred EEee
Q 017421 349 SFMV 352 (372)
Q Consensus 349 ~~~~ 352 (372)
.+++
T Consensus 270 ~~n~ 273 (399)
T KOG0296|consen 270 CNNG 273 (399)
T ss_pred ecCC
Confidence 7774
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.8e-25 Score=184.52 Aligned_cols=187 Identities=23% Similarity=0.262 Sum_probs=157.5
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----eecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD-----ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
+..+.+-|..|+|||++|++|+-||.|.||+..+|+....+ ..+--+..+|.|+.|+.|..++++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45778899999999999999999999999999887432211 1122445689999999999999999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 276 (372)
.+.+|.+...+. . .|+..|+|+.|+.|+..+++++.|.++++.-+++|+++..+.+|.+.|+...
T Consensus 291 ri~tG~ClRrFd--r-------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFD--R-------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhh--h-------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceE
Confidence 999999855443 1 4777999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCC-CeEEEE
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCN-KYLIIY 324 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g-~~l~~~ 324 (372)
|+ ++|+.+++++.||+|++|+.++.. +...+|.++..-|.+ ..++++
T Consensus 356 ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 356 FT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred Ec-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEE
Confidence 99 999999999999999999987422 455677777776654 334444
No 70
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.6e-23 Score=195.13 Aligned_cols=209 Identities=13% Similarity=0.070 Sum_probs=155.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----------EeeecccCCcceEEEEECC-CCCEEEEEeCCCe
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ----------KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 192 (372)
-..|.....++++..+++++.+.....|+...+..+. ......+|.+.|.+++|+| ++++|++++.|+.
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 3445556666776666666666666677654442221 1123567889999999999 8899999999999
Q ss_pred EEEEECCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421 193 VHIVDVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (372)
Q Consensus 193 i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 270 (372)
|++||+.++...... .... ...+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+..|..
T Consensus 100 IkIWdi~~~~~~~~~~~~l~----------~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIV----------HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEecCCCccccccCcceE----------EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 999999865421100 0000 012588899999999985 6899999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCC-eeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINP-CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~-v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
.|.+++|+ ++|.+|++++.|+.|++||+++. ..|... +..+.|.+++..++++... ...|++|++||+.+
T Consensus 170 ~V~sla~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s--~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 170 QITSLEWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCS--KSQQRQIMLWDTRK 246 (493)
T ss_pred ceEEEEEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecC--CCCCCeEEEEeCCC
Confidence 99999999 89999999999999999999843 345443 4567899988777654311 12368889998876
Q ss_pred ce
Q 017421 344 LR 345 (372)
Q Consensus 344 ~~ 345 (372)
..
T Consensus 247 ~~ 248 (493)
T PTZ00421 247 MA 248 (493)
T ss_pred CC
Confidence 54
No 71
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=188.54 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=172.9
Q ss_pred ccCCceeEeeeeeCCCCC----ccc-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE---------Eeeec
Q 017421 100 SAADCCHMLSRYLPVNGP----WPV-DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ---------KDILA 165 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~----~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~ 165 (372)
.+-|..+.+|++...... ..+ ......|++++|++.|..|++.+...+.+|+|-....... .....
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT 264 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT 264 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence 445567778887654322 122 2346789999999999999988888899999966543222 23345
Q ss_pred ccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 166 KSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 166 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
++|...+++..|+|+. ..+++++.||++++||+...+........ ...++..-+++.++|+|||++||+
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~----------k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT----------KPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee----------ccCCCcccCceeeecCCCcchhhh
Confidence 7899999999999954 56889999999999999876532222111 112245568999999999999999
Q ss_pred EeCCCeEEEEECCCCe---EEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCCCCee
Q 017421 245 GSSDDCIYVYDLEANK---LSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCN 310 (372)
Q Consensus 245 ~s~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~ 310 (372)
|..||.|.+|+..... ....-.+|.. .|+||.|| ++|++|++-+.|+++++||++..+ ....+-+
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS-~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t 413 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS-YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT 413 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEec-cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCC
Confidence 9999999999986543 2223346877 99999999 999999999999999999998543 2345668
Q ss_pred EEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421 311 KYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY 348 (372)
Q Consensus 311 ~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~ 348 (372)
.++|||+.++|++|+.-.-..-.+++.++|..+...++
T Consensus 414 dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ 451 (641)
T KOG0772|consen 414 DCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVY 451 (641)
T ss_pred ccccCCCceEEEecccccCCCCCceEEEEeccceeeEE
Confidence 99999999999988421111112455555555554444
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.2e-23 Score=169.89 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=185.2
Q ss_pred ccccCCceeEeeeeeCCCCC--ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421 98 RFSAADCCHMLSRYLPVNGP--WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 174 (372)
+..+.++...+|.+.+.... ....+|.+.|-.++|+| ..++|++++.|.+|++||...+++........+ -.-
T Consensus 36 asgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e----ni~ 111 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGE----NIN 111 (313)
T ss_pred eecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCc----ceE
Confidence 44666778888888876433 34578999999999988 568899999999999999999987776443332 446
Q ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccccee--------ccC-----------------CCCcccc
Q 017421 175 TSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFS--------AAD-----------------DGGYSFG 229 (372)
Q Consensus 175 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------------~~~h~~~ 229 (372)
+.|+|+|.+++.+..|..|...|.++.+.............+.+. ... -..|...
T Consensus 112 i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn 191 (313)
T KOG1407|consen 112 ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN 191 (313)
T ss_pred EEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc
Confidence 899999999999999999999999877654333222111111111 111 1468889
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----C
Q 017421 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----R 304 (372)
Q Consensus 230 i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~ 304 (372)
..||.|+|+|++||+|+.|..+.+||++.--+++.+..+.-+|..+.|+ .+|++||+++.|..|-|=++++.. .
T Consensus 192 CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS-~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 192 CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS-HDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec-cCcceeeccCccceEEeEecccCCeEEEee
Confidence 9999999999999999999999999999999999999999999999999 999999999999999888887654 5
Q ss_pred CCCCeeEEEeccCCCeEEEEeeeeEE---EeeceEEEeec
Q 017421 305 SINPCNKYLFNPCNKYLIIYLILVIS---IYSPNILLDNY 341 (372)
Q Consensus 305 ~~~~v~~~~~s~~g~~l~~~~~~~~~---~~d~~i~lw~~ 341 (372)
+.++...++|+|...+||-+.+..-. .--++++++-+
T Consensus 271 ~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 271 CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 77889999999998888866433221 11155666543
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1e-24 Score=191.20 Aligned_cols=224 Identities=13% Similarity=0.136 Sum_probs=172.5
Q ss_pred eeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecccCCcceEEEEECCCCCEE
Q 017421 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAKSLRWTVTDTSLSPDQRHL 184 (372)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 184 (372)
....|......+.+|+..|.++++.|.|-.|++|+.|-.|++||+..... ...+..... ..|.+++|++.+..|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQI 229 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeE
Confidence 44567777788899999999999999999999999999999999986421 112112223 369999999999999
Q ss_pred EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EE
Q 017421 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LS 262 (372)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~ 262 (372)
++.+...+.+|+|-.........+-.... ......+||...++|-+|+|+. ..+++++.||++++||+...+ .+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~ 305 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYI----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL 305 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhh----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence 99999999999997755432222110000 1112235899999999999976 578899999999999997654 23
Q ss_pred EEee-----cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------cCCCC--CeeEEEeccCCCeEEEEee
Q 017421 263 LRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------TRSIN--PCNKYLFNPCNKYLIIYLI 326 (372)
Q Consensus 263 ~~~~-----~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~--~v~~~~~s~~g~~l~~~~~ 326 (372)
..+. +..-+++.++|+ ++|++||+|+.||+|.+|+.+.. +.|.. .|+++.||+||++|++-+
T Consensus 306 qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg- 383 (641)
T KOG0772|consen 306 QVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG- 383 (641)
T ss_pred eEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc-
Confidence 3332 233478999999 99999999999999999997622 25655 899999999999999765
Q ss_pred eeEEEeeceEEEeecccce
Q 017421 327 LVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 327 ~~~~~~d~~i~lw~~~~~~ 345 (372)
+|.+++|||+...+
T Consensus 384 -----~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 384 -----FDDTLKVWDLRQFK 397 (641)
T ss_pred -----CCCceeeeeccccc
Confidence 79999999987655
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=8.1e-24 Score=180.87 Aligned_cols=258 Identities=14% Similarity=0.126 Sum_probs=205.4
Q ss_pred CCCCCccccceeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCC---CccccCCCCceEEEEECCCCCEEEE
Q 017421 73 PGKRHLPVSTVKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVA 141 (372)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~ 141 (372)
-.+...|....+++..|.. .|++.|.+ .+.|++.++|...+... ...+.+|..+|..+.||||.++|++
T Consensus 207 c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred cCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEe
Confidence 3455566666777777766 47888876 67778899999988777 6778899999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (372)
Q Consensus 142 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
++.+..+.+||+.++....... .++...+.+++|.|||..+++|+.|+.+..||++..... . .+..
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~-~---W~gv-------- 352 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILG-N---WEGV-------- 352 (519)
T ss_pred cCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhh-c---cccc--------
Confidence 9999999999999997655432 234567999999999999999999999999999865421 1 1110
Q ss_pred CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
....|.+++..+||+++++.+.|..|++++..+......+. ...+|++++.| .+++++++.-.+..+++||+..
T Consensus 353 ----r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 353 ----RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred ----ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEc-CCCcEEEEEcccCeeEEeecch
Confidence 11269999999999999999999999999998876654444 44789999999 9999999999999999999972
Q ss_pred ------ccCCCCC--eeEEEecc-CCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEE
Q 017421 302 ------LTRSINP--CNKYLFNP-CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILF 356 (372)
Q Consensus 302 ------~~~~~~~--v~~~~~s~-~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~ 356 (372)
..+|... +..-+|-- +..++++|+ .|+.|++|+-.+|+.+-.+.||...
T Consensus 427 ~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS------ED~kvyIWhr~sgkll~~LsGHs~~ 484 (519)
T KOG0293|consen 427 NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS------EDSKVYIWHRISGKLLAVLSGHSKT 484 (519)
T ss_pred hhHHHHhhcccccceEEEeccCCCCcceEEecC------CCceEEEEEccCCceeEeecCCcce
Confidence 2244432 33335543 347788886 6999999999999999999999743
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=193.63 Aligned_cols=199 Identities=15% Similarity=0.135 Sum_probs=161.6
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd 197 (372)
.+.+|.+.|..+.||.++ +|++++.|.+|++|++....++.. -.|...|+|++|+| |.++|++|+.||.|+||+
T Consensus 364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~----F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV----FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred hhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE----EecCCeeEEEEecccCCCcEeecccccceEEee
Confidence 468999999999999755 789999999999999998877764 35777899999999 899999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee--cC------C
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL--AH------T 269 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~------~ 269 (372)
+...++..-..+. .-|++++|.|||++.+.|+.+|.+++|+....+...... .| .
T Consensus 439 I~d~~Vv~W~Dl~-----------------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 439 ISDKKVVDWNDLR-----------------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cCcCeeEeehhhh-----------------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 9877653322221 379999999999999999999999999998776554432 11 2
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccC--CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTR--SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
..|+.+.|.|.+...+++.+.|..|||||.+ .+++ ....-....|+.||++|++++ -|..|++|++
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s------eDs~VYiW~~ 575 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS------EDSWVYIWKN 575 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee------cCceEEEEeC
Confidence 3799999997777778888899999999995 2232 233446779999999999996 5899999998
Q ss_pred ccce
Q 017421 342 FLLR 345 (372)
Q Consensus 342 ~~~~ 345 (372)
....
T Consensus 576 ~~~~ 579 (712)
T KOG0283|consen 576 DSFN 579 (712)
T ss_pred CCCc
Confidence 5444
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.8e-24 Score=187.29 Aligned_cols=197 Identities=17% Similarity=0.164 Sum_probs=160.3
Q ss_pred CCCCceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421 122 QTTSRAYVSQFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
.....|.+++|+|...+ +|+.+. -.+.||+..+...... ....+..+.++.|..||+++++|...|.|+++|+.+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~---~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT---FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh---HHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34578999999996654 454443 5799999876544333 334445799999999999999999999999999766
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 279 (372)
........ +|+.++..+.|+|++ ..+++|++|+.+++||+.+......+.+|+..|.|.+|+|
T Consensus 100 r~iLR~~~----------------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~ 163 (487)
T KOG0310|consen 100 RVILRQLY----------------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP 163 (487)
T ss_pred HHHHHHHh----------------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence 43333222 588899999999965 5678889999999999999988778899999999999998
Q ss_pred CCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 280 ESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
.+++++++|+.||+|++||+++.. .|..+|.++.+-|.|..+++++ -+.+++||+.+|.
T Consensus 164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 164 ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGG 228 (487)
T ss_pred CCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCc
Confidence 889999999999999999999662 7899999999999999999986 4566777777544
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-23 Score=180.82 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=168.3
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
..|...+.+++.++||++||+|+.|..|.||+.++.+.+.. +.+|.+.|.+++|-.....+++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~---~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV---FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc---ccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 37889999999999999999999999999999999866665 789999999999999889999999999999999987
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 280 (372)
........ ||+..|..|.-..-++.+-+|+.|+++++|++... ....+.+|.+.+.|++|-
T Consensus 276 ~s~vetly----------------GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~I-- 336 (479)
T KOG0299|consen 276 LSYVETLY----------------GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFI-- 336 (479)
T ss_pred hHHHHHHh----------------CCccceeeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEe--
Confidence 65433332 78889999988877887778889999999999543 335667899999999996
Q ss_pred CCCEEEEEeCCCeEEEEeccccc------------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 281 SGHLIYSGSDDNLCKVNSVLLLT------------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 281 ~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+...|++|+.+|.|.+|++.+.+ .+..+|++++..|...++++++ |+++++||.+.
T Consensus 337 n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------~~G~vrLW~i~ 410 (479)
T KOG0299|consen 337 NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------WSGCVRLWKIE 410 (479)
T ss_pred cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------CCCceEEEEec
Confidence 77889999999999999985211 1224899999999999999998 99999999998
Q ss_pred cc
Q 017421 343 LL 344 (372)
Q Consensus 343 ~~ 344 (372)
.+
T Consensus 411 ~g 412 (479)
T KOG0299|consen 411 DG 412 (479)
T ss_pred CC
Confidence 87
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.8e-24 Score=173.65 Aligned_cols=219 Identities=15% Similarity=0.117 Sum_probs=182.5
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.++|=..++|+-......+.+ .|...|.+++|+.|.++|++|+.+..++|||++..+... ....+|.+.|..+.|..
T Consensus 77 aaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App--~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP--KEISGHTGGIRTVLWCH 153 (334)
T ss_pred hcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc--hhhcCCCCcceeEEEec
Confidence 334445567777776655544 578899999999999999999999999999998764332 23668888999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
..+.|++++.|+.|++||.+++......... .+|+++..+++|++|.++. .+.|..||..+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-----------------s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf 215 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFN-----------------SPVTSLEVSQDGRILTIAY-GSSVKFWDAKSF 215 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecC-----------------CCCcceeeccCCCEEEEec-CceeEEeccccc
Confidence 9999999999999999999999876555432 3899999999998766554 678999999998
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
..+..+. ....|.+...+ |+...++.|+.|..++.||..+. ++|.++|.++.|+|+|...++++ .
T Consensus 216 ~~lKs~k-~P~nV~SASL~-P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS------E 287 (334)
T KOG0278|consen 216 GLLKSYK-MPCNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS------E 287 (334)
T ss_pred cceeecc-Ccccccccccc-CCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC------C
Confidence 8877766 45788999999 77799999999999999998743 58899999999999999999987 6
Q ss_pred eceEEEeecccceEE
Q 017421 333 SPNILLDNYFLLRTF 347 (372)
Q Consensus 333 d~~i~lw~~~~~~~~ 347 (372)
|++|+||....++..
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998877754
No 79
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-23 Score=166.90 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=179.2
Q ss_pred ccccCCceeEeeeeeCCCC---CccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421 98 RFSAADCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 172 (372)
...++|+.+++....+... ...+.+|.++|+-++|.. -|.+||++++||.|.||.-+++ ...+......|...|
T Consensus 27 ATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SV 105 (299)
T KOG1332|consen 27 ATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASV 105 (299)
T ss_pred eeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccc
Confidence 4467788888887776654 456799999999999965 8999999999999999998877 444445566888899
Q ss_pred EEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---C--------
Q 017421 173 TDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---G-------- 239 (372)
Q Consensus 173 ~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~-------- 239 (372)
.+++|.| -|-.|++++.||.|.|.+++....-....... .|...|++++|.|- |
T Consensus 106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-------------aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-------------AHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred eeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-------------ccccccceeeecCcCCCccccccCcc
Confidence 9999999 46789999999999999987652211222222 36678999999985 4
Q ss_pred ---CEEEEEeCCCeEEEEECCCCe--EEEEeecCCCCeEEEEEeCCCC---CEEEEEeCCCeEEEEecc---------cc
Q 017421 240 ---RELVAGSSDDCIYVYDLEANK--LSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVNSVL---------LL 302 (372)
Q Consensus 240 ---~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~---------~~ 302 (372)
+.|++|+.|..|+||+..+++ .-.++.+|.+.|..++|.|..| ..|++++.||++.||-.+ .+
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc
Confidence 569999999999999998764 3455789999999999996553 589999999999999876 23
Q ss_pred cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 303 TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 303 ~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+.....++.+.||+.|..|+++. =|+.+.+|.-.
T Consensus 253 ~~f~~~~w~vSWS~sGn~LaVs~------GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVVWRVSWSLSGNILAVSG------GDNKVTLWKEN 286 (299)
T ss_pred ccCCcceEEEEEeccccEEEEec------CCcEEEEEEeC
Confidence 35667899999999999999874 27788888643
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2e-23 Score=172.50 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=156.1
Q ss_pred ccCCCCcc---ccCCceeEeeeee------------CCC------CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEE
Q 017421 92 NYSGRGRF---SAADCCHMLSRYL------------PVN------GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRI 150 (372)
Q Consensus 92 ~~~~~~~~---~~~~~~~~~~~~~------------~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 150 (372)
.|+++|.+ .++|..+++.+.. ++. ..+.+..|...|+++.|+|....|++|+.|++|++
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 57777766 6666666665544 110 12346789999999999999999999999999999
Q ss_pred EeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421 151 YDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (372)
Q Consensus 151 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 230 (372)
||+...........+ ....+|.++.|+|.|.+|+.|.....+++||+++-++-...+ ++.+|+..|
T Consensus 199 FDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-------------Pd~qht~ai 264 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-------------PDDQHTGAI 264 (430)
T ss_pred EecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-------------cccccccce
Confidence 999764222221111 223479999999999999999999999999999987643332 234688899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTS-DVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+++.+++.+++.++++.||.|++||--+++|+.++. +|.+ .|.+..|. .+|+++++.+.|..+++|.+.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeeeec
Confidence 999999999999999999999999999999988875 5654 78889999 999999999999999999985
No 81
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=7.7e-23 Score=186.71 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=193.2
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
+++...+++|+....+..+.+.. +.+.+..|-|.++++++|...|.+.+||+.....+.. ...|.+.|++++.+|
T Consensus 390 Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Et---i~AHdgaIWsi~~~p 464 (888)
T KOG0306|consen 390 SGAGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVET---IRAHDGAIWSISLSP 464 (888)
T ss_pred ecCCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhh---hhccccceeeeeecC
Confidence 56667888888877766555543 3889999999999999999999999999998766554 558899999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCc-----eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGT-----MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw 254 (372)
|++.+++|+.|.+|++||+.--. ......+ .+.. .. .-...|.|+.+||||++|+++=.|.+|+||
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl--~~~r-tL------el~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL--KHTR-TL------ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccceeeee--ccce-EE------eccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 99999999999999999974211 1010000 0000 00 123489999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeee
Q 017421 255 DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILV 328 (372)
Q Consensus 255 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 328 (372)
-+++-+....+.+|.-||.|+..+ ||+++++|||.|.+|++|-+. ++..|...|.++.|-|....+.+++
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g--- 611 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG--- 611 (888)
T ss_pred EecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec---
Confidence 999999999999999999999999 999999999999999999987 4558899999999999888777775
Q ss_pred EEEeeceEEEeecccceEEEEEeee
Q 017421 329 ISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 329 ~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
-|+.++-||...-..++.+.+|
T Consensus 612 ---KD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 612 ---KDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred ---CcceEEeechhhhhhheeeccc
Confidence 5888999998888888888888
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=8.5e-23 Score=193.76 Aligned_cols=204 Identities=18% Similarity=0.196 Sum_probs=167.6
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC---C------------eEEEEeeecccCCcceEEEEECCCCCE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER---G------------WKIQKDILAKSLRWTVTDTSLSPDQRH 183 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~---~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (372)
....|.+.|+|+.|+|||++||+|+.|+.|.||+... + +.......+.+|...|..+.|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 4567999999999999999999999999999999873 0 122234456789999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 017421 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (372)
Q Consensus 184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 263 (372)
+++++.|+.|.+|+..+.+...... +|.+.|-.+.|.|-|++||+-+.|++|++|++.+....+
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLR----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred EEEecccceEEEEccccceeeeeee----------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 9999999999999999986555444 688899999999999999999999999999865532211
Q ss_pred ----------------------------------------------------EeecCCCCeEEEEEeCC-----C-----
Q 017421 264 ----------------------------------------------------RILAHTSDVNTVCFGDE-----S----- 281 (372)
Q Consensus 264 ----------------------------------------------------~~~~~~~~v~~~~~sp~-----~----- 281 (372)
.+-+|..++.+++|+|. .
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCc
Confidence 14478999999999951 1
Q ss_pred --CC----EEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 282 --GH----LIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 282 --~~----~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
++ .+|+|+.|++|.||.....+ -....|..++|+|||..|++++ +|++|.+..+...
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS------~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS------LDGTVALIHFEEK 357 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe------cCCeEEEEEcchH
Confidence 11 67899999999999986433 3567899999999999988886 7999998877653
No 83
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=2.8e-22 Score=187.81 Aligned_cols=194 Identities=11% Similarity=0.058 Sum_probs=142.4
Q ss_pred EeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec
Q 017421 142 GFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (372)
Q Consensus 142 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
|+.++.|++|+......+. ...+|...|.+++|+|+ +.+|++|+.|+.|++||+.++...... ..... ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i~~p~--~~--- 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-IKDPQ--CI--- 120 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-cccce--EE---
Confidence 5567889999987654333 36789999999999996 789999999999999999865321000 00000 00
Q ss_pred cCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 221 ADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 221 ~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
..+|...|.+++|+|++.. |++++.|++|++||+++++....+. |...|.+++|+ ++|.+|++++.|+.|+|||+
T Consensus 121 --L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws-pdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 121 --LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN-IKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred --eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC-CCCCEEEEEecCCEEEEEEC
Confidence 0257789999999999875 4788999999999999998777775 66789999999 99999999999999999999
Q ss_pred ccc------cCCCCCeeE-----EEeccCCCeEEEEeeeeEEEeeceEEEeeccc-ceEEEEE
Q 017421 300 LLL------TRSINPCNK-----YLFNPCNKYLIIYLILVISIYSPNILLDNYFL-LRTFYSF 350 (372)
Q Consensus 300 ~~~------~~~~~~v~~-----~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~-~~~~~~~ 350 (372)
++. ..|...+.. ..|++++.+|++++... ..+++|+|||+.. ++++..+
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~--~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK--NNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC--CCccEEEEEECCCCCCceEEE
Confidence 843 356655433 34568888888764110 0124788999885 4444443
No 84
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.5e-25 Score=198.61 Aligned_cols=198 Identities=20% Similarity=0.241 Sum_probs=175.6
Q ss_pred eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 187 (372)
+|..-.......+.+|..+|.++.|+++..+|++|+.+|+|++||++....++. +.+|...+.++.|+|-+.+.+.|
T Consensus 54 L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt---Ltgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 54 LWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT---LTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred cccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh---hhccccCcceeeeccceEEeccc
Confidence 555555555556899999999999999999999999999999999998866664 67888899999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA 267 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 267 (372)
+.|+.+++||++...+..... +|...+.++.|+|+|+++++|+.|.+++|||+..|+.+..+..
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~----------------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYK----------------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred cccccceehhhhccCceeeec----------------CCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 999999999999766644443 5777899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEe
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
|++.+..+.|+ |..-++++|+.|+++++||++++ +.....|.+.+|+|+++.++++.
T Consensus 195 ~e~~v~sle~h-p~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 195 HEGKVQSLEFH-PLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ccccccccccC-chhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 99999999999 88889999999999999999954 35678899999999999988874
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.7e-22 Score=160.06 Aligned_cols=205 Identities=15% Similarity=0.191 Sum_probs=156.6
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--Eeeecc-------------------------------
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ--KDILAK------------------------------- 166 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~------------------------------- 166 (372)
-..|.+.|+|.+|+|+|.+|++|+.|.+|++..++...+.. ....+.
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 36789999999999999999999999999998765421110 001111
Q ss_pred ----------------cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccE
Q 017421 167 ----------------SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI 230 (372)
Q Consensus 167 ----------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 230 (372)
+|.+-|.++ ++-++-++++|+.|.+|++||++-..+...........+ -..+.|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g---------lessav 234 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG---------LESSAV 234 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC---------ccccee
Confidence 333333332 233466788888899999999987776544332211111 134689
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc----------
Q 017421 231 FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL---------- 300 (372)
Q Consensus 231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---------- 300 (372)
..++..|.|++|++|..|....+||++.++.++.+..|...|.|+.|+ |...++++++.|..|++-|+.
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs-p~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS-PGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-CCceEEEEecccceEEEeecccchhhcCceE
Confidence 999999999999999999999999999999999999999999999999 999999999999999999986
Q ss_pred cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 301 LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 301 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
....|...+..+.|+|..-.+++.+ .|.+..||-+
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisss------adkt~tlwa~ 348 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSS------ADKTATLWAL 348 (350)
T ss_pred EEEeccCceEEEEecCccceeeecc------CcceEEEecc
Confidence 1237888889999999876555443 4777888854
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=9.1e-24 Score=180.55 Aligned_cols=223 Identities=13% Similarity=0.107 Sum_probs=187.7
Q ss_pred ccCCceeEeeeeeCCC--CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
.+.|+.+.+|+..+.. ....+.+-.++|+.++|.++++++++++.|+.+++|++...+.... +.+|...|+++.|
T Consensus 193 gg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~T---LsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 193 GGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHT---LSGHTDKVTAAKF 269 (459)
T ss_pred cchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhh---hcccccceeeehh
Confidence 6777888899998877 4556778889999999999999999999999999999998866555 6689999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
......+++|+.|.+|++||+....+....... ..+..|..+ ...+++|..|+.|++||++
T Consensus 270 ~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-----------------S~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 270 KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-----------------SQCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hccccceeeccccchhhhhhhhhhheecccccc-----------------ccccceEec--ceeeeecccccceEEEecc
Confidence 988777999999999999999987764433321 245555555 4568899999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeee
Q 017421 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
+..+......+. .|+++..+ .+|..+.+++.|.++.+.|+++.. ......+.+.|||++.|+++|+
T Consensus 331 s~~~~~sv~~gg-~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS-- 406 (459)
T KOG0288|consen 331 SADKTRSVPLGG-RVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS-- 406 (459)
T ss_pred CCceeeEeecCc-ceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc--
Confidence 999998888765 99999999 999999999999999999998533 1223478999999999999997
Q ss_pred eEEEeeceEEEeecccceEEEEEee
Q 017421 328 VISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
.|+.++||++.+++..+.+..
T Consensus 407 ----~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 407 ----ADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ----CCCcEEEEEccCceEEEEecc
Confidence 699999999999998776543
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=168.77 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=196.9
Q ss_pred cceeeeecccCcc--------CCCCccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421 81 STVKMLAGREGNY--------SGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (372)
Q Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 152 (372)
...+.+.||..++ .+.....++|....+|.+..........+|.+.|+++.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 3455666776643 23334577888999999999999999999999999999999999999999999999997
Q ss_pred C------CCC-------------------------------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 153 V------ERG-------------------------------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 153 ~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
. ... .....+..+.+|...|.+..|...++.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 110 001122345688889999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 274 (372)
||++++....... ||....+.++-+|..+++++++.|.+.++||.+.. ..+..+.+|...|++
T Consensus 299 wDVEtge~v~~Lt----------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 299 WDVETGEVVNILT----------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeccCceecccc----------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 9999998765554 78889999999999999999999999999999843 456778899999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421 275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT 346 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~ 346 (372)
+.|. .+..+++|+.|.+|++||++.+. ...++++.++.+..+..|+.-. -+.+|+|+|+.-.+.
T Consensus 363 ~vF~--~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh------DNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 363 VVFN--TDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH------DNRQVRLFDLNGNRL 432 (481)
T ss_pred EEEe--cCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc------CCceEEEEecCCCcc
Confidence 9997 56679999999999999998655 3456788888888887887774 246788888765543
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.6e-23 Score=184.56 Aligned_cols=218 Identities=15% Similarity=0.102 Sum_probs=180.1
Q ss_pred ccCCceeEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
...+..+.+|+.........+.+ |...|-+++|+ +..+.+|+.++.|..+|+...+.... ...+|...|..++|+
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWS 310 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEEC
Confidence 55566777888888888888888 99999999999 77799999999999999987755444 367888899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEe--CCCeEEEEE
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGS--SDDCIYVYD 255 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s--~dg~i~iwd 255 (372)
+|++++++|+.|+.+.|||........... .|.+.|..++|+|- ..+||+|+ .|++|++||
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~----------------~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFT----------------EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEe----------------ccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 999999999999999999995544322222 48889999999994 56788764 589999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE-e-CCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421 256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSG-S-DDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~-~-~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
..++..+..+. -...|.+|.|+ +..+-|+++ + .++.|.||+.. .+.+|...|..++++|||..+++++
T Consensus 375 ~~~g~~i~~vd-tgsQVcsL~Ws-k~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a-- 450 (484)
T KOG0305|consen 375 TNTGARIDSVD-TGSQVCSLIWS-KKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA-- 450 (484)
T ss_pred cCCCcEecccc-cCCceeeEEEc-CCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec--
Confidence 99999988876 45789999999 555444443 3 56789999986 3458999999999999999999886
Q ss_pred eEEEeeceEEEeecccce
Q 017421 328 VISIYSPNILLDNYFLLR 345 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~~~~ 345 (372)
-|.++++|++....
T Consensus 451 ----~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 451 ----ADETLRFWNLFDER 464 (484)
T ss_pred ----ccCcEEeccccCCC
Confidence 58999999988753
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=2e-23 Score=180.63 Aligned_cols=213 Identities=12% Similarity=0.109 Sum_probs=164.8
Q ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-------eecccCCcceEEEEECC-CCCEEEEEeCCC
Q 017421 121 DQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKD-------ILAKSLRWTVTDTSLSP-DQRHLVYASMSP 191 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg 191 (372)
..|.+.|+.+.+-|.. ..+|+++..+.|.|||..+....... ..+.+|...-.+++|++ ..-.+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4588999999999965 45667788899999998764332221 24567777678899999 455789999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECC--CCeEEEEeecC
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE--ANKLSLRILAH 268 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~ 268 (372)
.|.+||+............... | .+|...|..++|+|- ..+|++++.|+.+.|||++ +.++.....+|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~----~-----~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTI----F-----SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccCCccccceEE----e-----ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc
Confidence 9999999865542111111100 1 168889999999995 4678899999999999999 55666777899
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 269 TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 269 ~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
.+.|.|++|+|.++.+||+|+.|++|++||+|. +.+|...|..+.|+|...-+.++++ .|+.+.+||+
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDl 346 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDL 346 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEec
Confidence 999999999988999999999999999999994 4589999999999999765554421 5899999998
Q ss_pred ccceEE
Q 017421 342 FLLRTF 347 (372)
Q Consensus 342 ~~~~~~ 347 (372)
..-...
T Consensus 347 s~ig~e 352 (422)
T KOG0264|consen 347 SRIGEE 352 (422)
T ss_pred cccccc
Confidence 654443
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=4e-22 Score=171.53 Aligned_cols=208 Identities=16% Similarity=0.132 Sum_probs=175.9
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+++..+++|.......+.....|..+|+.+..+|.|.||++++.|++..+.|++++..+...... ...-.+++.+|+|
T Consensus 279 aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 279 ASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP 357 (506)
T ss_pred cCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC
Confidence 566677888888888888899999999999999999999999999999999999999776654332 2334589999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
||..|.+|+.||.|++||+..+.....+. +|+++|..++|+.+|-+|+++++|+.|++||++..
T Consensus 358 DgLifgtgt~d~~vkiwdlks~~~~a~Fp----------------ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFP----------------GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred CceEEeccCCCceEEEEEcCCccccccCC----------------CCCCceeEEEeccCceEEEEEecCCeEEEEEehhh
Confidence 99999999999999999999887433332 68899999999999999999999999999999988
Q ss_pred eEEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421 260 KLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 260 ~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
+...++...+ ..+.++.|. +.|.+|+.++.|=.|++++-. .+..|.+..+.+.|....+++++++
T Consensus 422 ~n~kt~~l~~~~~v~s~~fD-~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 422 KNFKTIQLDEKKEVNSLSFD-QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred cccceeeccccccceeEEEc-CCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence 8777776332 379999998 999999999888777777632 3446777889999999999999875
No 91
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=5.9e-23 Score=194.83 Aligned_cols=231 Identities=16% Similarity=0.093 Sum_probs=176.2
Q ss_pred cCCCCceEEEEECCCCCEEEEEe--CCCcEEEEeCCCC--------e-EEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGF--QASQIRIYDVERG--------W-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~--------~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 189 (372)
..+...|.+++.+|||..+++|+ .|+.+.||+.+.- . ..........|.+.|.|+.|+|||++||+|+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 44566799999999999999999 8999999987531 1 11122234578889999999999999999999
Q ss_pred CCeEEEEECCCCceeeecce---eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421 190 SPIVHIVDVGSGTMESLANV---TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (372)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 266 (372)
|+.|.||+..........-. ....+.+... ....+|.+.|..++|+|++.+|++++.|++|.+||.++.+.+..+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 99999999874110000000 0000000000 0012688999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------------RSINPCNKYLFNPCNKYLIIYLILVISIYSP 334 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~ 334 (372)
+|.+.|..+.|. |-|++||+-+.|++|+||++.... ........+.|||||++|++... +.---.
T Consensus 169 ~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA--~n~~~~ 245 (942)
T KOG0973|consen 169 GHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA--VNGGKS 245 (942)
T ss_pred cccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh--ccCCcc
Confidence 999999999999 999999999999999999965311 23445788999999999998731 111135
Q ss_pred eEEEeecccceEEEEEeeeEE
Q 017421 335 NILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 335 ~i~lw~~~~~~~~~~~~~h~~ 355 (372)
++.|.+-.+.+.-..|.||..
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred eeEEEecCCceeeeeeecCCC
Confidence 677888888888899999953
No 92
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-21 Score=161.12 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=190.6
Q ss_pred ccCCCCcc---ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecc
Q 017421 92 NYSGRGRF---SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAK 166 (372)
Q Consensus 92 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~ 166 (372)
.|+..+.. .+.|+.+.+++.........+..+.-.|..++|....+.++.++. |.+|+..++.+.+.++- ..
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY---F~ 97 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY---FP 97 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE---cC
Confidence 34555543 456678999999999999999999999999999877777777666 88999999999877775 88
Q ss_pred cCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 167 SLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 167 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
+|...|.++..+|-+..+++++.|++|++||++..++....... .-..++|+|+|-++|++.
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------------~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------------GRPIAAFDPEGLIFALAN 159 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------------CCcceeECCCCcEEEEec
Confidence 99999999999999999999999999999999988876655432 334588999999999998
Q ss_pred CCCeEEEEECCCC--eEEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCC---CCCeeEE
Q 017421 247 SDDCIYVYDLEAN--KLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRS---INPCNKY 312 (372)
Q Consensus 247 ~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~---~~~v~~~ 312 (372)
....|++||++.- .+..++. +.....+.+.|+ |||+.|+.+...+.+++.|.-.. ..+ ..-.-+.
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 8779999999864 2333333 345678899999 99999999999999999986421 111 1122678
Q ss_pred EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
+|+||+++++++. .|++|.+|++.+++.+-.+.+.
T Consensus 239 ~ftPds~Fvl~gs------~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 239 TFTPDSKFVLSGS------DDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred EECCCCcEEEEec------CCCcEEEEEcCCCcEeeEecCC
Confidence 9999999999996 5899999999999999888884
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-21 Score=161.29 Aligned_cols=208 Identities=16% Similarity=0.204 Sum_probs=172.7
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC--CCeEEEE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM--SPIVHIV 196 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vw 196 (372)
.+....+.|.++.|+++|.++++++.|.+|++||..++..+.. ...++..+..+.|......++.++. |.+|+..
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t---i~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT---INSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE---eecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 3444678999999999999999999999999999999977665 3344446778888776677776666 8899999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 276 (372)
++.+.+.++.+. ||...|+.++.+|-+..+++++.|++|++||++..++...+.....+ .++
T Consensus 86 sl~dNkylRYF~----------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~A 147 (311)
T KOG1446|consen 86 SLHDNKYLRYFP----------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAA 147 (311)
T ss_pred EeecCceEEEcC----------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--cee
Confidence 999998876665 89999999999999999999999999999999988887776644333 578
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeccccc-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVLLLT-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
|. |.|-++|++.....|++||+|... +.....+.+.|||||++|+.++ -.+.+.+-|+.+|.
T Consensus 148 fD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT------~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 148 FD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST------NASFIYLLDAFDGT 220 (311)
T ss_pred EC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe------CCCcEEEEEccCCc
Confidence 98 999999999888899999999542 3355679999999999999886 46778888999999
Q ss_pred EEEEEeeeE
Q 017421 346 TFYSFMVHI 354 (372)
Q Consensus 346 ~~~~~~~h~ 354 (372)
...+|.+|.
T Consensus 221 ~~~tfs~~~ 229 (311)
T KOG1446|consen 221 VKSTFSGYP 229 (311)
T ss_pred EeeeEeecc
Confidence 888887764
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.3e-23 Score=185.62 Aligned_cols=231 Identities=12% Similarity=0.133 Sum_probs=185.8
Q ss_pred ccCCceeEeeeeeCCCC------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceE
Q 017421 100 SAADCCHMLSRYLPVNG------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT 173 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~ 173 (372)
++.|..+++|....... ...++.|...|+.+....+++-|++++.|-+|++|+...+. .........|...|.
T Consensus 43 gGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 43 GGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVK 121 (735)
T ss_pred cCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcccchhe
Confidence 34445666777654332 35578899999999999999999999999999999998773 223334678999999
Q ss_pred EEEE-CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421 174 DTSL-SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (372)
Q Consensus 174 ~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~ 252 (372)
++++ .++...+|+|+.|+.|.+||++++............ ......|+...|++++.++.|..|++|+..+.++
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t-----~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVT-----VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccc-----cccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 9999 778889999999999999999988431111111000 0011126788999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEee
Q 017421 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLI 326 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~ 326 (372)
+||.++++.+..+.+|...|.++..+ +||..+++++.||+|++||+. +...|...|+++..+|+=..+++|.
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~-dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~- 274 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVN-DDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG- 274 (735)
T ss_pred EeccccccceeeeeccccceEEEEEc-CCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-
Confidence 99999999999999999999999999 999999999999999999997 4557888999999999988888875
Q ss_pred eeEEEeeceEEEeeccc
Q 017421 327 LVISIYSPNILLDNYFL 343 (372)
Q Consensus 327 ~~~~~~d~~i~lw~~~~ 343 (372)
-|+.|..-|+.+
T Consensus 275 -----rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 275 -----RDGNIYRTDLRN 286 (735)
T ss_pred -----CCCcEEecccCC
Confidence 466666666555
No 95
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=9.7e-23 Score=190.23 Aligned_cols=232 Identities=18% Similarity=0.163 Sum_probs=191.4
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.|...++|+.........+.+|.+.|.++... ..++++|+.|.+|+||+++++..+.. ..+|..+|.++..+
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l---~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNL---LRGHTGPVNCVQLD- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEE---eccccccEEEEEec-
Confidence 5558899999999999999999999999998886 45678899999999999998876664 44589999999997
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+.++++|+.|+.|++||+.++++..... ||...|.++.+.+. ..+++|+.|++|++||+++.
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~----------------gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLS----------------GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeec----------------CCcceEEEEEecCc-ceEEeeeeccceEeecCCch
Confidence 8899999999999999999888765554 78889999988765 78999999999999999999
Q ss_pred -eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccC-CCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 260 -KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTR-SINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 260 -~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~-~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
+++.++.+|..-+..+.+ .+++|++++.|++|++||... +.. +...|+.+++. +...++++
T Consensus 403 ~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~------- 471 (537)
T KOG0274|consen 403 RKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSS------- 471 (537)
T ss_pred hhhhhhhcCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEe-------
Confidence 999999999998877665 478999999999999999873 334 55778887776 33344444
Q ss_pred eeceEEEeecccceEEEEEeeeEEEeeecccCCcc
Q 017421 332 YSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHNH 366 (372)
Q Consensus 332 ~d~~i~lw~~~~~~~~~~~~~h~~~~~~~~~~~~~ 366 (372)
.|+++++||+.+++..+.+..+-+...+-.-.++.
T Consensus 472 ~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~~~~ 506 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTLLSTDLGATWGVAPSSP 506 (537)
T ss_pred cCCeeEEEecccCchhhhhhhcccccccccccCCC
Confidence 68999999999999998886655544444444433
No 96
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.8e-22 Score=155.81 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=166.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC------CC------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE------RG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~------~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 190 (372)
....|.+++|+|.|.+.++|+...+++|-... .+ .........+.|++.|.+.+|+|.|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 36689999999999999999999988876432 11 1111223356788999999999999999999999
Q ss_pred CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC----CCEEEEEe-CCCeEEEEECCCCeEEEEe
Q 017421 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAGS-SDDCIYVYDLEANKLSLRI 265 (372)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 265 (372)
..|++.-++...+...-.-. .|+ .|.+.|..++|-.+ +..|++++ .|..|++-|..+|+..+.+
T Consensus 111 k~ik~l~fn~dt~~~~g~dl------e~n-----mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDL------EFN-----MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ceEEEEecccccccccCcce------eee-----ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 99999887765543222111 111 36679999999543 45677654 4677888899999999999
Q ss_pred ecCCCCeEEE-EEeCCCCCEEEEEeCCCeEEEEecccc------c-------CCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 266 LAHTSDVNTV-CFGDESGHLIYSGSDDNLCKVNSVLLL------T-------RSINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 266 ~~~~~~v~~~-~~sp~~~~~l~s~~~dg~i~vwd~~~~------~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
.+|.+.|.++ .| ++-++++|+.|.+|++||++.. . -..+.|.+++..|.|++|+++.
T Consensus 180 sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~------ 250 (350)
T KOG0641|consen 180 SGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH------ 250 (350)
T ss_pred cCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc------
Confidence 9999999887 44 5889999999999999999821 1 1236789999999999999996
Q ss_pred eeceEEEeecccceEEEEEeeeE
Q 017421 332 YSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 332 ~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
.|....|+|+.-+++++.|..|.
T Consensus 251 ~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred CCCceEEEEeeCCceeeeeCCCc
Confidence 58888999999999999998885
No 97
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.2e-23 Score=172.80 Aligned_cols=218 Identities=12% Similarity=0.109 Sum_probs=177.0
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
...+.+|...|+.++-....+.+.+++.|.+.+||.++++.++.+ ..+|.+.|.++.|++.+.++++++.|++-.||
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceee---ecccccceeeEEeccccceEEEccCCcchHHH
Confidence 345789999999999988888889999999999999999988876 77999999999999999999999999999999
Q ss_pred ECCCCceeeecceeeccc----------ccceec--------------cCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421 197 DVGSGTMESLANVTEIHD----------GLDFSA--------------ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~----------~~~~~~--------------~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~ 252 (372)
...-.-..+.......+. ...+.. -...||.+.|.+..|-..|+.+++++.|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 732111111100000000 000000 01147899999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
+||+++++.+..+.+|....+.++-+ |..+++++.+.|.+.++||.+ .+++|...|+++.|..+.+.+..+
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstH-ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgS- 375 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTH-PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGS- 375 (481)
T ss_pred eeeeccCceeccccCcchhccccccC-CcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecC-
Confidence 99999999999999999999999999 999999999999999999998 467999999999999986655444
Q ss_pred eeeEEEeeceEEEeecccce
Q 017421 326 ILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 326 ~~~~~~~d~~i~lw~~~~~~ 345 (372)
-|.+|++||+.+.+
T Consensus 376 ------DDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 376 ------DDRTVKVWDLRNMR 389 (481)
T ss_pred ------CCceEEEeeecccc
Confidence 37788888877664
No 98
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.8e-23 Score=189.31 Aligned_cols=211 Identities=15% Similarity=0.199 Sum_probs=165.0
Q ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCce
Q 017421 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 126 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
.+..+.|+. +.++||+++..|.|.+||+...-.......+..|.-.+.++.|++ ...+|++|+.||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345567765 578999999999999999987422223334678888999999999 556789999999999999998775
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDES 281 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~ 281 (372)
..... +.+..|..+.|+|. +..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|+ |+
T Consensus 169 ~~t~~----------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh-Pn 231 (839)
T KOG0269|consen 169 KSTFR----------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH-PN 231 (839)
T ss_pred ccccc----------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeec-CC
Confidence 44443 23458999999994 688999999999999999865 4677888999999999999 79
Q ss_pred CCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCe-EEEEeeeeEEEeeceEEEeecccce-EEEEEee
Q 017421 282 GHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFLLR-TFYSFMV 352 (372)
Q Consensus 282 ~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~ 352 (372)
+.+||||+.|+.|+|||..... ....+|..+.|-|...+ |++++ -+-|..|.+||+.--= +...|.-
T Consensus 232 r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcs----mv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 232 REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCS----MVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred CceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhh----ccccceEEEEeeccccccceeeec
Confidence 9999999999999999987322 45578999999999765 44443 2247889999986443 3445555
Q ss_pred eEEEe
Q 017421 353 HILFS 357 (372)
Q Consensus 353 h~~~~ 357 (372)
|.-..
T Consensus 308 H~~~v 312 (839)
T KOG0269|consen 308 HTDSV 312 (839)
T ss_pred cCccc
Confidence 54433
No 99
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=2.7e-22 Score=169.82 Aligned_cols=171 Identities=13% Similarity=0.191 Sum_probs=143.6
Q ss_pred CCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeE
Q 017421 116 GPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIV 193 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 193 (372)
..+.+.+|...=++++|||- ...|++|..-+.|++|...++.-......+.+|...|-.++|+|. ...|++++.||.|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 34567899999999999993 234788888889999999887554444556679999999999994 5678999999999
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeecCCC
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRILAHTS 270 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~ 270 (372)
+|||++.+........ . .|.+.|+.|.|+..-.+||+|+.||+++|||+++ ++++..++-|..
T Consensus 283 rIWDiRs~~~~~~~~~-k-------------Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVST-K-------------AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EEEEecCCCccceeEe-e-------------ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 9999998854322222 1 4777999999999888999999999999999985 568889999999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+|+++.|+|.+...|++++.|..|.+||+.
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 999999998888899999999999999985
No 100
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.5e-22 Score=162.13 Aligned_cols=203 Identities=17% Similarity=0.119 Sum_probs=164.8
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEE
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd 197 (372)
-..|...|..+...--|++||+++.|++|+|+.++.+........+.+|.+||+.++|.. -|.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 356888898888888899999999999999999987755445556889999999999976 899999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC---eEEEEeecCCCCe
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN---KLSLRILAHTSDV 272 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~v 272 (372)
-..++-...... ..|...|++++|.|. |-.|++++.||.|.|.+.+.. ........|.-.|
T Consensus 87 e~~g~w~k~~e~--------------~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 87 EENGRWTKAYEH--------------AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred cCCCchhhhhhh--------------hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 988854222221 147889999999996 567899999999999998754 2233456799999
Q ss_pred EEEEEeCCC--C-----------CEEEEEeCCCeEEEEecc--------cccCCCCCeeEEEeccCC----CeEEEEeee
Q 017421 273 NTVCFGDES--G-----------HLIYSGSDDNLCKVNSVL--------LLTRSINPCNKYLFNPCN----KYLIIYLIL 327 (372)
Q Consensus 273 ~~~~~sp~~--~-----------~~l~s~~~dg~i~vwd~~--------~~~~~~~~v~~~~~s~~g----~~l~~~~~~ 327 (372)
++++|.|+. | +.|++|+.|..|+||+.. ++.+|...|..++|.|.- ..|++++
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S-- 230 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS-- 230 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--
Confidence 999999542 3 569999999999999986 477999999999999984 3566664
Q ss_pred eEEEeeceEEEeecc
Q 017421 328 VISIYSPNILLDNYF 342 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~ 342 (372)
.|+++.+|-..
T Consensus 231 ----qDg~viIwt~~ 241 (299)
T KOG1332|consen 231 ----QDGTVIIWTKD 241 (299)
T ss_pred ----CCCcEEEEEec
Confidence 57888888543
No 101
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=161.91 Aligned_cols=209 Identities=16% Similarity=0.158 Sum_probs=157.0
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----EEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP 191 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 191 (372)
..+.+|...|++++|+.||++|++++.|+.|+||+++.-. .++... ..+ -.+.+.|.||.+-+++... ..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~d---hpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYD---HPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCC---CceEEEECCCcceEEEEEccCC
Confidence 3578999999999999999999999999999999997631 122211 112 3678999999887776655 45
Q ss_pred eEEEEECCCCceeeecceeec-ccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421 192 IVHIVDVGSGTMESLANVTEI-HDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 270 (372)
.+++|.+...+-- ....... .....| ...|+..+..+-...++.+|++++.|..|.+|+++ |+.+..+.....
T Consensus 156 ~l~vyk~~K~~dG-~~~~~~v~~D~~~f----~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 156 KLCVYKLVKKTDG-SGSHHFVHIDNLEF----ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred EEEEEEeeecccC-CCCccccccccccc----chhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 7999987543221 1111110 011111 12477788888888888999999999999999999 988888887777
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEecc--------------cccCCCCCeeEEEeccCCCeEEEEe-eeeEEEeece
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL--------------LLTRSINPCNKYLFNPCNKYLIIYL-ILVISIYSPN 335 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--------------~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~~~~d~~ 335 (372)
.-+..+.| |+|+++++++.-.-|++|.+- .+++|...|..++|+++...+++.+ |+.+++||..
T Consensus 230 ~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 230 SNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 77889999 999999999999999999973 4669999999999999999888775 4455555544
Q ss_pred EE
Q 017421 336 IL 337 (372)
Q Consensus 336 i~ 337 (372)
++
T Consensus 309 Vr 310 (420)
T KOG2096|consen 309 VR 310 (420)
T ss_pred ce
Confidence 44
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.2e-21 Score=180.80 Aligned_cols=222 Identities=16% Similarity=0.167 Sum_probs=179.9
Q ss_pred eecccCccCCCCccccCCceeEeeeeeCCCC-Cccc-----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 017421 86 LAGREGNYSGRGRFSAADCCHMLSRYLPVNG-PWPV-----DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI 159 (372)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 159 (372)
-..++..+.........+.....|++..... .+.+ ......+.+++.++.|++.+.|+..|.|-+|++++|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 3344443333333345555666777766543 2222 224578999999999999999999999999999998555
Q ss_pred EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC
Q 017421 160 QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG 239 (372)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~ 239 (372)
........|..+|++++...-++.+++++.+|.+++||..+........+. ..+.++..+...
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-----------------~~~~~iv~hr~s 546 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-----------------SSITGIVYHRVS 546 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-----------------CCcceeeeeehh
Confidence 554445688899999999999999999999999999999887643333221 267888888888
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEe
Q 017421 240 RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLF 314 (372)
Q Consensus 240 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~ 314 (372)
..++.+..|-.|.++|+.+.+.++.+.+|.+.|++++|| |||++|++++.|++|++||+.+.. ....+++++.|
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 889999999999999999999999999999999999999 999999999999999999998654 45678999999
Q ss_pred ccCCCeEEEEe
Q 017421 315 NPCNKYLIIYL 325 (372)
Q Consensus 315 s~~g~~l~~~~ 325 (372)
+|+|.+||+..
T Consensus 626 SPngD~LAT~H 636 (910)
T KOG1539|consen 626 SPNGDFLATVH 636 (910)
T ss_pred CCCCCEEEEEE
Confidence 99999999995
No 103
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8e-22 Score=171.21 Aligned_cols=226 Identities=14% Similarity=0.136 Sum_probs=176.3
Q ss_pred eeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421 108 LSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (372)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 187 (372)
+|.+.+........-.+++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+.. ...|-.+|+++.|+-|+.+|++|
T Consensus 65 vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v---~~aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 65 VWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV---LSAHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred ccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH---HHhhccceeEEEEeCCCcEEEec
Confidence 344443333332333578999999999999999998999999999999976665 46777789999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeEEEEe
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEANKLSLRI 265 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~~~~~~~ 265 (372)
+.||.|.+|.+..--......... .--.| ..|.-+|+++...+. ...+++++.|.++++||+..+..+.++
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~--p~~~f-----~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVK--PLHIF-----SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred CCCccEEEEEEEeecccccCCCcc--ceeee-----ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 999999999874211000000000 00001 157779999988765 368999999999999999999988877
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----------------------ccCCCC--CeeEEEeccCCCeE
Q 017421 266 LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------------------LTRSIN--PCNKYLFNPCNKYL 321 (372)
Q Consensus 266 ~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------------------~~~~~~--~v~~~~~s~~g~~l 321 (372)
. -...+.+++.+ |.++.++.|+.+|.|.+.++.. +.+|.. .|++++.+-||..|
T Consensus 215 ~-fp~si~av~lD-pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 215 T-FPSSIKAVALD-PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred e-cCCcceeEEEc-ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 6 56789999999 9999999999999999887641 225555 99999999999999
Q ss_pred EEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 322 IIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
++|. -|+++.+||+.+.+.++.+.
T Consensus 293 lSGd------~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 293 LSGD------EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred EeeC------CCCCEEEEecchHHHHHHHh
Confidence 9996 68999999999988877664
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=160.99 Aligned_cols=217 Identities=15% Similarity=0.158 Sum_probs=171.4
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (372)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (372)
..|+.|++.|.+||+|+.||.|.|||+.+-..-. .+..|..+|++++|++||+.|++++.|..|.+||+..|.+...
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998864222 3567888999999999999999999999999999999987666
Q ss_pred cceeecccccceeccCC------------------------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421 207 ANVTEIHDGLDFSAADD------------------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (372)
Q Consensus 207 ~~~~~~~~~~~~~~~~~------------------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~ 256 (372)
..+.....+..+.|... +.-.....+..|.+.|++|++|...|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 65555554444444322 111122233468888999999999999999999
Q ss_pred CCCeEEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------------CCCCCeeEEEeccCC
Q 017421 257 EANKLSLRILAHT-SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------------RSINPCNKYLFNPCN 318 (372)
Q Consensus 257 ~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------------~~~~~v~~~~~s~~g 318 (372)
.+.+++..++-.. ..|..+.++ ..|++|+.-+.|..||.|+++.+. -....-.+++|+.+|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 9999988877554 688999998 999999999999999999987322 112234678999999
Q ss_pred CeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
.++++++. ---.+++|.-..|..++-+-|
T Consensus 262 eYv~a~s~-----~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 262 EYVCAGSA-----RAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred cEEEeccc-----cceeEEEEecCCcceeeeecC
Confidence 99998852 245678888888888776644
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.1e-21 Score=160.07 Aligned_cols=202 Identities=15% Similarity=0.113 Sum_probs=150.0
Q ss_pred CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 123 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
-...|.+++||| ...++++++.|++|++|+++.. .... .....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 467899999999 5667779999999999999873 3333 23457788999999999999999999999999999999
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeecC----------
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILAH---------- 268 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------- 268 (372)
++...+.. |..+|..+.|-+... .|++|+.|.+|+.||++...++.++.-.
T Consensus 104 ~Q~~~v~~-----------------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~ 166 (347)
T KOG0647|consen 104 GQVSQVAA-----------------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY 166 (347)
T ss_pred CCeeeeee-----------------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC
Confidence 97654443 778999999987655 8899999999999999987666554311
Q ss_pred -------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc--------ccCCC---
Q 017421 269 -------------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL--------LTRSI--- 306 (372)
Q Consensus 269 -------------------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--------~~~~~--- 306 (372)
.-.+.|++.. .+....+.|+-.|.+-+..+.. ++.|.
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-QDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-ecCCceEeeeecceEEEEecCCCCccCceeEEEeccCC
Confidence 1134566666 6666667777777777766542 12222
Q ss_pred ------CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 307 ------NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 307 ------~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
..|++++|+|....|+++. -||++.+||-.....++..
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaG------sDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAG------SDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred CCCCceEEecceEeecccceEEEec------CCceEEEecchhhhhhhcc
Confidence 3578899999877676553 3666666665555554443
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.6e-22 Score=182.96 Aligned_cols=198 Identities=12% Similarity=0.117 Sum_probs=158.1
Q ss_pred ccCCceeEeeeeeC---CCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421 100 SAADCCHMLSRYLP---VNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (372)
Q Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (372)
.+....+.+|++-. ......|..|...+++++|++. -.+|++|++||+|++||++....... ..+....|..+
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t---~~~nSESiRDV 182 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST---FRSNSESIRDV 182 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc---ccccchhhhce
Confidence 44555667787766 3344578899999999999995 56789999999999999997755544 33455679999
Q ss_pred EECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 017421 176 SLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVY 254 (372)
Q Consensus 176 ~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iw 254 (372)
+|+| .+..|+++...|.+.+||++....-... .. .|.++|.|+.|+|++.+||||+.|+.|+||
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k--~~-------------AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK--LT-------------AHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHH--hh-------------cccCceEEEeecCCCceeeecCCCccEEEE
Confidence 9999 6788999999999999999876531111 11 477899999999999999999999999999
Q ss_pred ECCCCeE--EEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCeEEEEecc-------cccCCCCCeeEEEecc
Q 017421 255 DLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGS--DDNLCKVNSVL-------LLTRSINPCNKYLFNP 316 (372)
Q Consensus 255 d~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~--~dg~i~vwd~~-------~~~~~~~~v~~~~~s~ 316 (372)
|+.+.+. +.++. ...+|.+|+|-|.....|++++ .|..|+|||++ ++..|...++.++|..
T Consensus 248 d~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 248 DMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred eccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence 9987653 33333 3468999999976777888876 58889999997 5668999999999976
No 107
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=7.8e-23 Score=164.27 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=189.2
Q ss_pred CCccccCCCCceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421 116 GPWPVDQTTSRAYVSQFSA---DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 192 (372)
.|....+|+.+|-.++||| +|-+|++++.|+.-.+-+-+++.-+-. +.+|++.|++..++.+....++++.|-+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt---feghkgavw~~~l~~na~~aasaaadft 82 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT---FEGHKGAVWSATLNKNATRAASAAADFT 82 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe---eeccCcceeeeecCchhhhhhhhcccch
Confidence 4566789999999999986 788899999999999888888877665 6799999999999999888999999999
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSD 271 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~ 271 (372)
-++||.-+|..+..+. |...|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.
T Consensus 83 akvw~a~tgdelhsf~-----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhhhhhhhhh-----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 9999999988654443 55689999999999999999999999999998765 56778899999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421 272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT 346 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~ 346 (372)
|..+-|. ...+.|++...|++||+||.++.. ....+|+++..+++|++|.++ |-+.|++||..+...
T Consensus 146 Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-------~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 146 IRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-------YGSSVKFWDAKSFGL 217 (334)
T ss_pred ceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-------cCceeEEeccccccc
Confidence 9999999 778888888999999999999655 466799999999999999988 678889999999999
Q ss_pred EEEEeeeEEE-eeecccCC
Q 017421 347 FYSFMVHILF-SGYLHNDH 364 (372)
Q Consensus 347 ~~~~~~h~~~-~~~~~~~~ 364 (372)
++++.+-+.. +--||-.+
T Consensus 218 lKs~k~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 218 LKSYKMPCNVESASLHPKK 236 (334)
T ss_pred eeeccCccccccccccCCC
Confidence 9988665332 34455444
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=9.3e-21 Score=156.25 Aligned_cols=221 Identities=14% Similarity=0.100 Sum_probs=172.9
Q ss_pred ccCCceeEeeeeeCC--CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 100 SAADCCHMLSRYLPV--NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
++.|..+++|.+... ..+.....|.++|.+++|+.||..+++|+.|+.+++||+.+++.. ....|..+|..+.|
T Consensus 46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~w 121 (347)
T KOG0647|consen 46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHW 121 (347)
T ss_pred cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee----eeeecccceeEEEE
Confidence 678889999999873 445667889999999999999999999999999999999998333 26678889999999
Q ss_pred CCCCC--EEEEEeCCCeEEEEECCCCceeeecceeecccc-----------------cceeccCC--------CCccccE
Q 017421 178 SPDQR--HLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-----------------LDFSAADD--------GGYSFGI 230 (372)
Q Consensus 178 ~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--------~~h~~~i 230 (372)
-+... .|++|+.|.+|+.||++.........+++.... ..+...+. ..-...+
T Consensus 122 v~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~ 201 (347)
T KOG0647|consen 122 VPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQT 201 (347)
T ss_pred ecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccccee
Confidence 88555 899999999999999998776555443322111 01111010 1234568
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeecCCC---------CeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 231 FSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLRILAHTS---------DVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 231 ~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
+|++..+|....+.|+-+|.+-|..+..+ +.-.+++-|.. .|++++|+ |.-..|+|++.||++.+||-
T Consensus 202 R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh-P~hgtlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 202 RCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH-PVHGTLVTAGSDGTFSFWDK 280 (347)
T ss_pred eEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee-cccceEEEecCCceEEEecc
Confidence 89999999888899999999999999876 44455555542 46789999 67778999999999999996
Q ss_pred c------cccCCCCCeeEEEeccCCCeEEEEe
Q 017421 300 L------LLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 300 ~------~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
. +.+.+..+|++..|+.+|.+++-+.
T Consensus 281 dar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 281 DARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred hhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 5 4457899999999999999988663
No 109
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.2e-21 Score=169.81 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=164.0
Q ss_pred CccccCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCe
Q 017421 117 PWPVDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPI 192 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 192 (372)
...+.-+.++|.+++|+|.. +++|+|...|+|-+||+.+. ...........|..+|.++.|+| +..++++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44556789999999999954 57889999999999999522 22334445778889999999999 6678999999999
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCCCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHTSD 271 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~ 271 (372)
|++-|++.+....+..... -...+..+.|+.+...++.+..=|...+||++++.. ...+.-|...
T Consensus 259 iR~~D~~~~i~e~v~s~~~--------------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDT--------------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred eeeeeecchhhHHHhhcCc--------------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc
Confidence 9999999876544443321 123678889988888888888778999999998754 5566678889
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
|.+|+++|-...+|+|++.|++.+|||+|.+. .|...|.++.|||+|-.|++.. +|.+|+|||.
T Consensus 325 I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~------~D~~IRv~ds 398 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC------QDNEIRVFDS 398 (498)
T ss_pred cceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec------cCCceEEeec
Confidence 99999998888999999999999999998543 5778899999999976666543 6777777776
Q ss_pred c
Q 017421 342 F 342 (372)
Q Consensus 342 ~ 342 (372)
.
T Consensus 399 s 399 (498)
T KOG4328|consen 399 S 399 (498)
T ss_pred c
Confidence 4
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=2.9e-21 Score=175.16 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=174.0
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
+.+.|.++.++..........+.+|...|.|++...++. +++|+.|.+++||....- ... ..+|+..|+++..-
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~---l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYS---LQGHTASVWAVASL 149 (745)
T ss_pred eecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcc---cCCcchheeeeeec
Confidence 467778888888888888899999999999999988888 999999999999987643 222 67999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
|++ .+++|+.|..|++|.- ++....+. ||...|+.+++-|++ .|++++.||.|++|++ +
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~----------------gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ 208 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLKTFS----------------GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-D 208 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhhhhc----------------cchhheeeeEEecCC-CeEeecCCceEEEEec-c
Confidence 987 8999999999999986 44333333 788899999998875 5889999999999999 7
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----LTRSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
++++.++.+|...|+++... .++..++++++|++++||+... +.-....|+++.+-++|..++.++|+.+++|
T Consensus 209 ge~l~~~~ghtn~vYsis~~-~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMA-LSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred CceeeeeeccceEEEEEEec-CCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 88999999999999999977 7888999999999999999873 2234458899999999999988864444443
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=9.2e-22 Score=165.83 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=174.8
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----------------
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD---------------- 162 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---------------- 162 (372)
..+.|..+++|++......+.+..|.+.|.++++.. ..+++++.|.+|+.|-++.. .....
T Consensus 84 SGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~ 160 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNS 160 (433)
T ss_pred ccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeeccccccccccccccc
Confidence 366778899999999999999999999999999987 66888899999999974431 00000
Q ss_pred ----------ee----------cccCCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceecc
Q 017421 163 ----------IL----------AKSLRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (372)
Q Consensus 163 ----------~~----------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
+. ..-.-..|.++.|+|-. ..|+++..|+.|.+||++++.........
T Consensus 161 ~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------- 229 (433)
T KOG0268|consen 161 VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------- 229 (433)
T ss_pred cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----------
Confidence 00 00011247788888854 45677779999999999998875443322
Q ss_pred CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 222 DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 222 ~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
..-+.|+|+|.+-.+++|++|..++.||++.- .++....+|.+.|.+++|| |.|+-|++||.|.+|+||..+
T Consensus 230 ------mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 230 ------MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred ------ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC-CCcchhccccccceEEEeecC
Confidence 25678999998888899999999999999865 4677788999999999999 999999999999999999987
Q ss_pred ccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 301 LLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 301 ~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
... ..-..|.++.||.|.+++++|+ -|++|+||.....+.+
T Consensus 303 ~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS------dd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 303 HGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS------DDGNVRLWKAKASEKL 350 (433)
T ss_pred CCcchhhhhHhhhheeeEEEEeccccEEEecC------CCcceeeeecchhhhc
Confidence 433 1224689999999999999997 4799999987765543
No 112
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3e-21 Score=163.56 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=152.8
Q ss_pred ccCCCCceEEEEECCCC--CEEEEEeCCCcEEEEeCCCC-------------eEEEEeeecccCCcceEEEEECC-CCCE
Q 017421 120 VDQTTSRAYVSQFSADG--SLFVAGFQASQIRIYDVERG-------------WKIQKDILAKSLRWTVTDTSLSP-DQRH 183 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 183 (372)
...|.+.++.+.-++-+ .+.++-+..|.|+||++... .....+....+|...=.++.||| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777776654 45566678899999998632 11122334567777788999999 2334
Q ss_pred EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC---
Q 017421 184 LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEAN--- 259 (372)
Q Consensus 184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~--- 259 (372)
|++|...+.|++|...++.-..-.. +-.+|+..|-.++|||.. ..|++++.||+|+|||++.+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~-------------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQR-------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred cccCccccceEeeeeccCceeecCc-------------cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 8888888999999998876432222 122588899999999975 57899999999999999988
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc---------cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------TRSINPCNKYLFNPCNKYLIIYLILVIS 330 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 330 (372)
.++.+ ++|.+.|+.+.|+ .+-.+||+|+.||+++|||+|.+ +.|..+|+++.|+|...-.+++++
T Consensus 294 ~~~~~-kAh~sDVNVISWn-r~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---- 367 (440)
T KOG0302|consen 294 AAVST-KAHNSDVNVISWN-RREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---- 367 (440)
T ss_pred ceeEe-eccCCceeeEEcc-CCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----
Confidence 34444 7899999999999 77679999999999999999944 468999999999997543332211
Q ss_pred EeeceEEEeeccc
Q 017421 331 IYSPNILLDNYFL 343 (372)
Q Consensus 331 ~~d~~i~lw~~~~ 343 (372)
-|.+|.+||+..
T Consensus 368 -~D~QitiWDlsv 379 (440)
T KOG0302|consen 368 -EDNQITIWDLSV 379 (440)
T ss_pred -CCCcEEEEEeec
Confidence 477777887654
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4e-21 Score=173.07 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=182.7
Q ss_pred ccCCceeEeeeeeCCC--CCccccCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCeE--------EEEeeecccC
Q 017421 100 SAADCCHMLSRYLPVN--GPWPVDQTTSRAYVSQF-SADGSLFVAGFQASQIRIYDVERGWK--------IQKDILAKSL 168 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~~~~~~~~ 168 (372)
.+.|..+++|+..... ....+..|...|.|+++ .++..++|+|+-|+.|.+||++.+.. +.......++
T Consensus 91 ~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred ecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 5667788899888774 45667899999999999 88999999999999999999997622 1122223377
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d 248 (372)
..+|.+++.++.|..|++|+..+.+++||.++.+...... ||+..|.++..++||+.+++++.|
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr----------------GHTdNVr~ll~~dDGt~~ls~sSD 234 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR----------------GHTDNVRVLLVNDDGTRLLSASSD 234 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeee----------------ccccceEEEEEcCCCCeEeecCCC
Confidence 8899999999999999999999999999999987644443 788999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEE
Q 017421 249 DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLI 322 (372)
Q Consensus 249 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~ 322 (372)
|+|++||+...+++.++..|...|+++..+ ++=..+++|+.||.|..=|++... ....+|..+..+...+-+-
T Consensus 235 gtIrlWdLgqQrCl~T~~vH~e~VWaL~~~-~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W 313 (735)
T KOG0308|consen 235 GTIRLWDLGQQRCLATYIVHKEGVWALQSS-PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW 313 (735)
T ss_pred ceEEeeeccccceeeeEEeccCceEEEeeC-CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce
Confidence 999999999999999999999999999999 889999999999999999998532 4556777776664433332
Q ss_pred EEeeeeEEEeeceEEEeecccce
Q 017421 323 IYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 323 ~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
+++ +|+.|+-|.....-
T Consensus 314 vtT------tds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 314 VTT------TDSSIKRWKLEPDI 330 (735)
T ss_pred eee------ccccceecCCcccc
Confidence 232 68888888655433
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.4e-20 Score=156.10 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=167.7
Q ss_pred ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCC--EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGS--LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT 175 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 175 (372)
..++.|..+.+++.........+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+...-..+.. .+.|.+.|+.+
T Consensus 57 aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s---lK~H~~~Vt~l 133 (362)
T KOG0294|consen 57 ASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS---LKAHKGQVTDL 133 (362)
T ss_pred eccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee---eccccccccee
Confidence 3477788999999999998999999999999999999765 899999999999999987655544 67888889999
Q ss_pred EECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCC-----------------------CccccEEE
Q 017421 176 SLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG-----------------------GYSFGIFS 232 (372)
Q Consensus 176 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~h~~~i~~ 232 (372)
+.+|.+++-++.+.|+.++.||+-.|+.....++......+.|.+..+. .....+.+
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~ 213 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILC 213 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcccccee
Confidence 9999999999999999999999998887666666555555666654430 11234666
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE-EeCCCCCEEEEEeCCCeEEEEecccc
Q 017421 233 LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVNSVLLL 302 (372)
Q Consensus 233 ~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~sp~~~~~l~s~~~dg~i~vwd~~~~ 302 (372)
+.|- ++..|++|..|+.|.+||..+..+...+.+|...|.++. +..|.+.+|++++.||.|+|||++.-
T Consensus 214 ~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 214 ATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 6664 467899999999999999999999999999999999998 55577899999999999999999743
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2e-20 Score=174.63 Aligned_cols=224 Identities=17% Similarity=0.193 Sum_probs=179.3
Q ss_pred ccCCCCcc---ccCCceeEeeeeeCC-CCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421 92 NYSGRGRF---SAADCCHMLSRYLPV-NGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (372)
Q Consensus 92 ~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 167 (372)
++.+.+.| .+.+..++.|..... ..|..+.-+...|.+++.. +.+|++|+.+++|.+|.+..+..-.- +..
T Consensus 20 ~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~i---L~R 94 (933)
T KOG1274|consen 20 CYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTI---LAR 94 (933)
T ss_pred EEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccce---eee
Confidence 44555555 566777888887777 7777777788888887765 55899999999999999987643211 223
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 168 LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 168 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
..-++..++|+-+|++++.|+.|-.|++.++.........+ +|.++|.++.|+|.+++||+.+.
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----------------gh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----------------GHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----------------ccCCceeeeeEcCCCCEEEEEec
Confidence 33479999999999999999999999999998877654444 68889999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeec--------CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc--------cCCCCCeeE
Q 017421 248 DDCIYVYDLEANKLSLRILA--------HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL--------TRSINPCNK 311 (372)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~--------~~~~~~v~~ 311 (372)
||.|++||+.++.+..++.+ ....+..++|+ |+|..|+..+.|+.|++|+.... +.+...+..
T Consensus 159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~-Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWH-PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred CceEEEEEcccchhhhhcccCCccccccccceeeeeeec-CCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 99999999999887766643 13456779999 77666777778999999998632 234455899
Q ss_pred EEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421 312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
+.|+|+|+|||+++ -|+.|.|||+.+
T Consensus 238 ~~wsPnG~YiAAs~------~~g~I~vWnv~t 263 (933)
T KOG1274|consen 238 LQWSPNGKYIAAST------LDGQILVWNVDT 263 (933)
T ss_pred EEEcCCCcEEeeec------cCCcEEEEeccc
Confidence 99999999999995 589999999985
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-20 Score=156.09 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=159.0
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
...|..+.|+|.+..|++++.||.+++|++...... ....|..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~----~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK----LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh----hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc
Confidence 567999999999999999999999999999877322 2446677999999996 56799999999999999999876
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 283 (372)
..+.. |..+|.||.+++-...+++|+.|++|++||.+.......+. ....|.++..+ |+
T Consensus 88 ~~igt-----------------h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~---g~ 146 (323)
T KOG1036|consen 88 DQIGT-----------------HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS---GN 146 (323)
T ss_pred eeecc-----------------CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc---CC
Confidence 44443 77799999999988899999999999999999765555554 34478887765 77
Q ss_pred EEEEEeCCCeEEEEeccccc------------------------------------------------------CC----
Q 017421 284 LIYSGSDDNLCKVNSVLLLT------------------------------------------------------RS---- 305 (372)
Q Consensus 284 ~l~s~~~dg~i~vwd~~~~~------------------------------------------------------~~---- 305 (372)
.|++|+.|..+.+||++.+. .|
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~ 226 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE 226 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence 89999999999999987211 11
Q ss_pred -----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 306 -----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 306 -----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
..+|++++|+|-...+++|. -||-|.+||..+.|.++.|..
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgG------sDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGG------SDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred CCceEEEEeceeEeccccceEEecC------CCceEEEccCcchhhhhhccC
Confidence 12789999999988888885 477788888888877666543
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=4e-22 Score=168.01 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=174.6
Q ss_pred ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (372)
.+..+-..-.+-+.+..+....+.+|...|.|++=+|.. ..+++|+.||.|+|||+.+-.+... +..|.+.|..+.
T Consensus 40 Ey~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~---f~AH~G~V~Gi~ 116 (433)
T KOG0268|consen 40 EYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT---FKAHEGLVRGIC 116 (433)
T ss_pred HHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe---eecccCceeeEE
Confidence 343333444555666666677789999999999999977 7799999999999999987655554 668888999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc-------cceeccC------C----------CCccccEEEE
Q 017421 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-------LDFSAAD------D----------GGYSFGIFSL 233 (372)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~------~----------~~h~~~i~~~ 233 (372)
+.. ..+++++.|.+|+.|.+.... .....-.....+ ..|.... + .-....|.++
T Consensus 117 v~~--~~~~tvgdDKtvK~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 117 VTQ--TSFFTVGDDKTVKQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred ecc--cceEEecCCcceeeeeccCCc-ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEE
Confidence 986 668889999999999865431 111100000000 0011000 0 0112367888
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCC
Q 017421 234 KFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRS 305 (372)
Q Consensus 234 ~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~ 305 (372)
.|+|.. ..|+++..|+.|.+||++++.++..+. -...-+.++|+ |.+-.|++|+.|..++.||++.+ .+|
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~Iswn-PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWN-PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecC-ccccceeeccccccceehhhhhhcccchhhccc
Confidence 888865 456777789999999999998877765 33455789999 68888999999999999999854 378
Q ss_pred CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 306 INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 306 ~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
.+.|.+++|+|.|+-+++|+ ||.+|+++.+..++
T Consensus 272 vsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 272 VSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGH 305 (433)
T ss_pred ceeEEEeccCCCcchhcccc------ccceEEEeecCCCc
Confidence 89999999999999999988 99999999987764
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=2.7e-21 Score=165.50 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=170.9
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.|....+|+.........+.+|++.|+++.|......+++|+.|.+|++||+....+........ .+..|..+
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S----~cnDI~~~- 311 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS----QCNDIVCS- 311 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc----cccceEec-
Confidence 5556678899999999999999999999999998877779999999999999999987766544333 24445544
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
...+++|..|+.|++||+++..+...... .+.|+++..++++..+.+.+.|.++.+.|+++.
T Consensus 312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-----------------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 312 -ISDVISGHFDKKVRFWDIRSADKTRSVPL-----------------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred -ceeeeecccccceEEEeccCCceeeEeec-----------------CcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 55688899999999999999887554432 238999999999999999999999999999999
Q ss_pred eEEEEeecC----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeee
Q 017421 260 KLSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 260 ~~~~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
+....+.+. ....+.+.|| |++.++++|+.||.|+||++.+.+ .....|+++.|+|.|..|+++.
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfS-pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad-- 450 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFS-PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD-- 450 (459)
T ss_pred cEEEEeeccccccccccceeEEC-CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc--
Confidence 887777632 2357889999 999999999999999999997433 2223699999999999998875
Q ss_pred eEEEeeceEEEe
Q 017421 328 VISIYSPNILLD 339 (372)
Q Consensus 328 ~~~~~d~~i~lw 339 (372)
-+..+.+|
T Consensus 451 ----k~~~v~lW 458 (459)
T KOG0288|consen 451 ----KQKAVTLW 458 (459)
T ss_pred ----CCcceEec
Confidence 24555565
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=2.4e-22 Score=182.88 Aligned_cols=206 Identities=15% Similarity=0.192 Sum_probs=179.6
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
.+..|...|.++..-..++.+++|+.|-.+-+|.......+.. +.+|..+|.++.|+++..+|+.|+.+|.|++||+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe---eeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 4456888999999877889999999999999999877655543 6789999999999999999999999999999999
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
+.++...... ||...+.++.|+|-+.+++.|+.|+.+++||++..-|.+.+.+|...|.++.|+
T Consensus 100 eeAk~vrtLt----------------gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls 163 (825)
T KOG0267|consen 100 EEAKIVRTLT----------------GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS 163 (825)
T ss_pred hhhhhhhhhh----------------ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec
Confidence 9887544332 688899999999999999999999999999999888999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 279 DESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
|+|++++.++.|..++|||+. .+..|...+.++.|+|..-.++.++ .|.++++||..+-..+.+.
T Consensus 164 -P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs------~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 164 -PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGS------SDRTVRFWDLETFEVISSG 234 (825)
T ss_pred -CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCC------CCceeeeeccceeEEeecc
Confidence 999999999999999999995 3457889999999999988888775 5888999998876655543
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=8.1e-21 Score=164.72 Aligned_cols=214 Identities=15% Similarity=0.119 Sum_probs=178.8
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------------ec-ccCCcceEEEEECCCC
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDI--------------LA-KSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------~~-~~~~~~v~~~~~~~~~ 181 (372)
...+..|.-+|.+++++|+..+.++++.+++|.=|++.++....... .. ..|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 34567799999999999999999999999999999998875331110 11 2677789999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 261 (372)
++|++|+.|..|.||+.++.+.+.... +|...|.+++|-.....+++++.|++|++|+++....
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------ccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 999999999999999999988655433 6888999999988778899999999999999999888
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceE
Q 017421 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNI 336 (372)
Q Consensus 262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i 336 (372)
+.++.+|...|.++... ..++.+-+|+.|+++++|++. ...++...+-+++|-.+..++ +|+ -+|.|
T Consensus 279 vetlyGHqd~v~~IdaL-~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~Hfv-sGS------dnG~I 350 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDAL-SRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFV-SGS------DNGSI 350 (479)
T ss_pred HHHHhCCccceeeechh-cccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccccee-ecc------CCceE
Confidence 88999999999999887 777788888899999999996 344778889999998775554 454 48999
Q ss_pred EEeecccceEEEEE-eeeE
Q 017421 337 LLDNYFLLRTFYSF-MVHI 354 (372)
Q Consensus 337 ~lw~~~~~~~~~~~-~~h~ 354 (372)
.||++...+++..+ ..|-
T Consensus 351 aLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred EEeeecccCceeEeecccc
Confidence 99999999987765 4454
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-19 Score=165.19 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=196.5
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.+....+|++......+.+.++...|+++.=+|-=..+|.|..+|+|.|+++..++.+..... ..++|++++|..
T Consensus 178 Gs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~---d~g~VtslSFrt 254 (910)
T KOG1539|consen 178 GSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ---DWGRVTSLSFRT 254 (910)
T ss_pred eecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc---cccceeEEEecc
Confidence 56667788999999999999999999999999999999999999999999999999977766332 246899999999
Q ss_pred CCCEE-EEEeCCCeEEEEECCCCceeeecceee--cccc---------------------ccee----------------
Q 017421 180 DQRHL-VYASMSPIVHIVDVGSGTMESLANVTE--IHDG---------------------LDFS---------------- 219 (372)
Q Consensus 180 ~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~---------------------~~~~---------------- 219 (372)
||..+ ++|+..|.+.+||++..+......... ...+ ..|.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 99865 555667999999998766433322000 0000 0111
Q ss_pred ---------ccC---------C----------------------------------------------------------
Q 017421 220 ---------AAD---------D---------------------------------------------------------- 223 (372)
Q Consensus 220 ---------~~~---------~---------------------------------------------------------- 223 (372)
... +
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 000 0
Q ss_pred --------------------C----Cc------cccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecCCC
Q 017421 224 --------------------G----GY------SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTS 270 (372)
Q Consensus 224 --------------------~----~h------~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~ 270 (372)
+ .+ ...+++++.++.|++.+.|+..|.|.+|++++|-....+ ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 0 01 256788999999999999999999999999999887777 48999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------------------------------------------cc
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----------------------------------------------LT 303 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----------------------------------------------~~ 303 (372)
+|+.++.. ..++.+++++.+|-+++||... +.
T Consensus 495 ~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~ 573 (910)
T KOG1539|consen 495 EVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW 573 (910)
T ss_pred ceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh
Confidence 99999998 8899999999999999999751 22
Q ss_pred CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 304 RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 304 ~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
+|...|+.++|||||++|++++ -|++|++||+.++..+..+...
T Consensus 574 gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 574 GHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred ccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecC
Confidence 7899999999999999999986 6999999999999999887554
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6e-20 Score=152.35 Aligned_cols=206 Identities=14% Similarity=0.130 Sum_probs=162.9
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC--EEEEEeCCCeEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR--HLVYASMSPIVH 194 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 194 (372)
.+.+..|.+.+++++.+ ++++|+|+.|-+|+|||+.....+.. ...|.+.|+++.|.+... +|++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~---ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGI---LLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcc---eeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 45667899999999987 99999999999999999988755554 446788999999999765 899999999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT 274 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 274 (372)
+|+...-.+..... +|...|+.++.+|.+++-++.+.|+.+++||+-+|+.-..+.- ....+.
T Consensus 111 iw~~~~W~~~~slK----------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~ 173 (362)
T KOG0294|consen 111 IWRVGSWELLKSLK----------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATL 173 (362)
T ss_pred EEEcCCeEEeeeec----------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCccee
Confidence 99997765433333 5777899999999999999999999999999998876554442 223355
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421 275 VCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS 349 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~ 349 (372)
+.|+ |.|.+++.++.+ .|-+|.+..-. .....+.++.|-.. ..|++|. -|..|++||-.++.++..
T Consensus 174 v~w~-~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~-~~L~vG~------d~~~i~~~D~ds~~~~~~ 244 (362)
T KOG0294|consen 174 VSWS-PQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDG-SELLVGG------DNEWISLKDTDSDTPLTE 244 (362)
T ss_pred eEEc-CCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCC-ceEEEec------CCceEEEeccCCCcccee
Confidence 9999 999988888655 58899887322 22344677777554 4555554 368899999999999999
Q ss_pred Eeee
Q 017421 350 FMVH 353 (372)
Q Consensus 350 ~~~h 353 (372)
|.+|
T Consensus 245 ~~AH 248 (362)
T KOG0294|consen 245 FLAH 248 (362)
T ss_pred eecc
Confidence 9998
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=2e-20 Score=163.92 Aligned_cols=189 Identities=16% Similarity=0.192 Sum_probs=155.6
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--QKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
-.|..-|.++.+|...+++.+|+. |.|+|||+...... ...+........|.++.+.|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 468888999999999999999987 78999999753211 111111223346999999999999999999999999999
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
..........+.... -....++.+||.+..+++..||.|.|||+.+...++.+.+|...+.||.++
T Consensus 495 AapTprikaeltssa--------------paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSA--------------PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred cCCCcchhhhcCCcc--------------hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence 877653333322111 146678899999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421 279 DESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
++|..|-+|+-|++||.||++... ...+.|.++..+|++.+|+++.
T Consensus 561 -~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 561 -KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred -CCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeec
Confidence 999999999999999999998544 4567899999999999999995
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=1.4e-18 Score=154.34 Aligned_cols=241 Identities=17% Similarity=0.141 Sum_probs=163.2
Q ss_pred CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC
Q 017421 102 ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD 180 (372)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (372)
.+..+.+|+.........+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++..... ..+. .+..+.|+|+
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~---~~~~-~~~~~~~~~~ 83 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL---PSGP-DPELFALHPN 83 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec---cCCC-CccEEEECCC
Confidence 3455666665544444445544 346789999999876 56678899999999987654432 2222 3567899999
Q ss_pred CCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCC------------------C-------CccccEEEEE
Q 017421 181 QRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADD------------------G-------GYSFGIFSLK 234 (372)
Q Consensus 181 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~-------~h~~~i~~~~ 234 (372)
++.++++ ..++.|++||+.+++............++.+.++.. . .....+..++
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAE 163 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEE
Confidence 9977655 458999999998876433222111112222222110 0 0112345688
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEeCCCCCEEEE-EeCCCeEEEEeccccc--
Q 017421 235 FSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHT-------SDVNTVCFGDESGHLIYS-GSDDNLCKVNSVLLLT-- 303 (372)
Q Consensus 235 ~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~l~s-~~~dg~i~vwd~~~~~-- 303 (372)
|+|++++|+++ ..++.|.+||+++++.+..+..+. .....++|+ ++++++++ .+.++.|.+||+++.+
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~~~ 242 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYEVL 242 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999988554 468999999999998776654221 123568899 88887654 4456789999987432
Q ss_pred ---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 304 ---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 304 ---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
.+...+.+++|+|+|++|+++.. .++.|++||..+++.+..+...
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~l~~~~~-----~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 243 DYLLVGQRVWQLAFTPDEKYLLTTNG-----VSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred EEEEeCCCcceEEECCCCCEEEEEcC-----CCCeEEEEECCCCcEEEEEEcc
Confidence 23457889999999999987631 4789999999999988877643
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.4e-19 Score=167.58 Aligned_cols=213 Identities=15% Similarity=0.158 Sum_probs=171.2
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.+..+.++.+........+...+-++++++|+.+|+++|.|+.|-.|++.++.+...... ..+|.++|.++.|+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~---lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV---LRGHDAPVLQLSYDP 148 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee---ecccCCceeeeeEcC
Confidence 44555666777666666667778889999999999999999999999999999987654444 779999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
.+++||+.+.||.|++||+.++.+......... ...+ .....+..++|+|+|..++....|+.|++|+...+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k--~n~~------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK--DNEF------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCc--cccc------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 999999999999999999998876433221111 1111 11346788999999888888888999999999999
Q ss_pred eEEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccCC--CCCeeEEEeccCCCeEEEE
Q 017421 260 KLSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRS--INPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 260 ~~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~v~~~~~s~~g~~l~~~ 324 (372)
+....+.. +...+.+++|+ |+|.+||+++.||.|.|||.++...| ...|.+++|.|+...+..-
T Consensus 221 e~~f~Lr~~~~ss~~~~~~ws-PnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWS-PNGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred eeheeecccccccceEEEEEc-CCCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEE
Confidence 88777753 44458999999 89999999999999999999975543 4679999999998766543
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-18 Score=143.96 Aligned_cols=238 Identities=14% Similarity=0.154 Sum_probs=175.3
Q ss_pred ccccCCceeEeeeeeCCCCCccc----cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCC------CeEEEEeeec
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPV----DQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVER------GWKIQKDILA 165 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~ 165 (372)
...+.|+.+.+|++......+.. +.|.+.|..+.|.+ -|+.+|+++.|+++.||.-.. +.........
T Consensus 29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl 108 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL 108 (361)
T ss_pred eeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe
Confidence 34778889999998666666654 56899999999965 589999999999999998532 1222233345
Q ss_pred ccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC---CC
Q 017421 166 KSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD---GR 240 (372)
Q Consensus 166 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~---~~ 240 (372)
...+..|+.+.|.| -|-.+++++.||.++||+.-.........+.... ..-+.+...+..+..|+.|+|. ..
T Consensus 109 ~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei---~~~~~pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 109 VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI---QNVIDPPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh---hhccCCcccccCcceEEeeccccccCc
Confidence 56677899999999 5778999999999999997554332222211111 1111122346678899999985 46
Q ss_pred EEEEEeCC-----CeEEEEECCCC----eEEEEeecCCCCeEEEEEeCCCC---CEEEEEeCCCeEEEEeccc-------
Q 017421 241 ELVAGSSD-----DCIYVYDLEAN----KLSLRILAHTSDVNTVCFGDESG---HLIYSGSDDNLCKVNSVLL------- 301 (372)
Q Consensus 241 ~l~s~s~d-----g~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~~------- 301 (372)
+|+.|+.+ +.+.||....+ ..+.++.+|..+|++++|.|.-| .+||+++.|| |+||.++.
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ 264 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEE 264 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhh
Confidence 88888866 46888876543 35566779999999999996555 4789999999 99999862
Q ss_pred -------------------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 302 -------------------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 302 -------------------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
+.+|...|+.+.|+-.|..|++.+ -||++++|...-..
T Consensus 265 ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG------dDG~VRLWkany~n 321 (361)
T KOG2445|consen 265 EEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG------DDGCVRLWKANYNN 321 (361)
T ss_pred hcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC------CCceeeehhhhhhh
Confidence 237889999999999999998775 48888888754443
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.6e-19 Score=157.08 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=168.1
Q ss_pred CCCCcc--cc-CCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------CeEEEEeee
Q 017421 94 SGRGRF--SA-ADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDIL 164 (372)
Q Consensus 94 ~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~ 164 (372)
++.+.| .+ ....+.+|.+..+.-...+..|-..|+|+.|+-||.+|++|+.||.|.+|.+.. .........
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 444444 33 345678999999888888899999999999999999999999999999998753 112333445
Q ss_pred cccCCcceEEEEECCC--CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEE
Q 017421 165 AKSLRWTVTDTSLSPD--QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (372)
Q Consensus 165 ~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 242 (372)
+.+|.-+|+++...+. ..++++++.|.++++||+..+........+ ..+.+++.+|-++.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-----------------~si~av~lDpae~~~ 232 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-----------------SSIKAVALDPAERVV 232 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-----------------CcceeEEEcccccEE
Confidence 7788889999988774 467999999999999999999765444322 379999999999999
Q ss_pred EEEeCCCeEEEEECCCC----------------eEEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCeEEEEecc----
Q 017421 243 VAGSSDDCIYVYDLEAN----------------KLSLRILAHTS--DVNTVCFGDESGHLIYSGSDDNLCKVNSVL---- 300 (372)
Q Consensus 243 ~s~s~dg~i~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---- 300 (372)
+.|+.+|.|.+.++... ..+..+.+|.+ .|+|++++ -||.+|++|+.||.++|||+.
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe-cCccEEEeeCCCCCEEEEecchHHH
Confidence 99999999998887432 23455678888 99999999 999999999999999999986
Q ss_pred --cccCCCCCeeEEEeccCCC
Q 017421 301 --LLTRSINPCNKYLFNPCNK 319 (372)
Q Consensus 301 --~~~~~~~~v~~~~~s~~g~ 319 (372)
++....++|+.+.+.|--+
T Consensus 312 iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 312 IRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred HHHHhhhccccceeEeecccc
Confidence 3334678999999866543
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.5e-19 Score=152.69 Aligned_cols=245 Identities=17% Similarity=0.219 Sum_probs=185.8
Q ss_pred ccccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceE
Q 017421 98 RFSAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVT 173 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~ 173 (372)
...+.++.++++.+.....+.. +.--..+|.+.+|+|+|. .+++++.-..++.||+.+.+. .+.....++. ..+.
T Consensus 229 lvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~-~k~~~~~g~e~~~~e 307 (514)
T KOG2055|consen 229 LVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV-TKLKPPYGVEEKSME 307 (514)
T ss_pred EEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc-ccccCCCCcccchhh
Confidence 3466677777777665444433 233478899999999998 888999999999999987633 2322333333 3477
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 017421 174 DTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (372)
Q Consensus 174 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i 253 (372)
....+|++++|+..+..|.|.+....++..+...... +.|..++|+.|++.|++.+.+|.|.+
T Consensus 308 ~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred eeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 8889999999999999999999999988875555432 37899999999999999999999999
Q ss_pred EECCCCeEEEEeecCCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------------ccCCCCCeeEEEeccCCCe
Q 017421 254 YDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------------LTRSINPCNKYLFNPCNKY 320 (372)
Q Consensus 254 wd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------------~~~~~~~v~~~~~s~~g~~ 320 (372)
||++...+++++....+ .-++++.+ .++.+||+|+..|.|.|||..+ +......|+++.|+||++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999988874322 33577888 8999999999999999999752 2355678999999999999
Q ss_pred EEEEeeeeEEEeeceEEEeecccceEEEEE---------eeeEEEe---eecccCCc
Q 017421 321 LIIYLILVISIYSPNILLDNYFLLRTFYSF---------MVHILFS---GYLHNDHN 365 (372)
Q Consensus 321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~---------~~h~~~~---~~~~~~~~ 365 (372)
||.++ +.-+..++|--+.+...+..| ...+.|+ |||.--++
T Consensus 450 LAiaS----~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 450 LAIAS----RVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred hhhhh----hccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 99885 234566777666666655554 3335565 77765444
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.5e-19 Score=156.24 Aligned_cols=226 Identities=12% Similarity=0.164 Sum_probs=171.5
Q ss_pred ccccCCceeEeeeeeCCCC--C-c------------------cccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 017421 98 RFSAADCCHMLSRYLPVNG--P-W------------------PVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVER 155 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~--~-~------------------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~ 155 (372)
.+...+..+-+|++.-... | . .-.+|+..|..++|+.+ .+.||+|+.|.+|++||+.+
T Consensus 196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT 275 (463)
T ss_pred EEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence 4566677777887763322 1 1 12369999999999885 46789999999999999999
Q ss_pred CeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEE
Q 017421 156 GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK 234 (372)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~ 234 (372)
+++... ...|...|.++.|+| ....|++|+.|++|.+.|.+........ . ...+.|-.++
T Consensus 276 g~p~~s---~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~--w--------------k~~g~VEkv~ 336 (463)
T KOG0270|consen 276 GKPKSS---ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE--W--------------KFDGEVEKVA 336 (463)
T ss_pred CCccee---hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce--E--------------EeccceEEEE
Confidence 977665 457788999999999 5678999999999999999853221111 1 0224799999
Q ss_pred EcCCC-CEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCC-
Q 017421 235 FSTDG-RELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSI- 306 (372)
Q Consensus 235 ~sp~~-~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~- 306 (372)
|.|.. ..+++++.||+|+-+|++.. +++.++++|..+|.++++++....++++++.|+.|++|++..-. .|.
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 99965 56778889999999999975 89999999999999999997788899999999999999986222 111
Q ss_pred --CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 307 --NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 307 --~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
+...++++.|+-.++++..+ -.+.+++||+.+...+
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG-----~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGG-----EKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccceeecccCCCcceEEEecC-----ccceEEEeecccChhH
Confidence 23466677777655444321 2557899999887654
No 130
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=5.4e-19 Score=150.80 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=166.4
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE----EEeeecccCCcceEEEEECCC-CCEEEEEeCCC
Q 017421 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI----QKDILAKSLRWTVTDTSLSPD-QRHLVYASMSP 191 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 191 (372)
-.+.+|+++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35689999999999999 6778999999999999998765322 223346789999999999994 56789999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD 271 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 271 (372)
.|.+||+.+++..... .|..-|.++.|+.||.+|++.+.|..|+|||.++++.+..-.+|.+.
T Consensus 155 ~v~iWnv~tgeali~l-----------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~ 217 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITL-----------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA 217 (472)
T ss_pred eEEEEeccCCceeeec-----------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC
Confidence 9999999999864332 25668999999999999999999999999999999998888788762
Q ss_pred -eEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 272 -VNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 272 -v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
...+.|- .+|.++-+|- .+..+-+||...+. ...+.|.-.-|.||...++.+.- =|++|+.+
T Consensus 218 k~~Raifl-~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-----GD~~IRYy 291 (472)
T KOG0303|consen 218 KPARAIFL-ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-----GDSSIRYF 291 (472)
T ss_pred CcceeEEe-ccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-----CCcceEEE
Confidence 3345566 7888555542 46789999987554 34456666678899888877642 28999999
Q ss_pred ecccceEEEEE
Q 017421 340 NYFLLRTFYSF 350 (372)
Q Consensus 340 ~~~~~~~~~~~ 350 (372)
.+....++-.|
T Consensus 292 Eit~d~P~~hy 302 (472)
T KOG0303|consen 292 EITNEPPFVHY 302 (472)
T ss_pred EecCCCceeEE
Confidence 99888765444
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=7.4e-20 Score=160.41 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=177.1
Q ss_pred ccccCCceeEeeeeeCCCCCcc---c--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421 98 RFSAADCCHMLSRYLPVNGPWP---V--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 172 (372)
.|+++..++++|++........ + ......|+++.+.|||+.|++|+.-.++.|||+.......+.. +....-..
T Consensus 434 VyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae-ltssapaC 512 (705)
T KOG0639|consen 434 VYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPAC 512 (705)
T ss_pred eEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh-cCCcchhh
Confidence 4577778899999876433222 1 2245779999999999999999999999999998653322211 11111247
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (372)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~ 252 (372)
.+++.+||.+..++++.||.|.|||+........+. ||...+.||..++||..|-+|+-|.+|+
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq----------------GhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ----------------GHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeeccc----------------CCCCCceeEEecCCCceeecCCCcccee
Confidence 789999999999999999999999999877655554 7899999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421 253 VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
-||++++..+.... ....|.++.++ |++.++++|-.++.+-|-... .+..|.+-|.++.|++.|+++++..
T Consensus 577 cWDlregrqlqqhd-F~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG-- 652 (705)
T KOG0639|consen 577 CWDLREGRQLQQHD-FSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG-- 652 (705)
T ss_pred ehhhhhhhhhhhhh-hhhhheecccC-CCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC--
Confidence 99999988765543 45789999999 999999999999998887765 3447888999999999999988653
Q ss_pred eEEEeeceEEEeecccceEE
Q 017421 328 VISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~~~~~~ 347 (372)
-|+-+..|...-|..+
T Consensus 653 ----kDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 653 ----KDNLLNAWRTPYGASI 668 (705)
T ss_pred ----chhhhhhccCccccce
Confidence 3555666655544433
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.82 E-value=4.3e-19 Score=161.15 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=173.9
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE-EEECC-CCCEEEEEeCCCeEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD-TSLSP-DQRHLVYASMSPIVHI 195 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~v 195 (372)
+.+.+|...|..++..+.. .+++++.||++++|+-..++.+.. ....++.+-|.. +++.+ ++-.+++|+.|..|.+
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccc-eecccCcceeeccceeccccCcceEeecccceEEE
Confidence 4678899999998876544 789999999999999866544432 223444444544 77776 4456999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
|...+........ ||.+.|++++...++. +++||.|.++++|-. +++...+.+|...|+++
T Consensus 86 ~~~~~~~P~~~Lk----------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 86 FKLSQAEPLYTLK----------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred EecCCCCchhhhh----------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence 9998887655544 7999999999877777 999999999999975 45556689999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEecc----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVL----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
+.- |.+ .++|||.|.+|++|.-. ++.+|..-|..+++-+++.++.++ -|+.|++|+. +|..+..+.
T Consensus 147 ~~l-~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScs-------NDg~Ir~w~~-~ge~l~~~~ 216 (745)
T KOG0301|consen 147 ASL-PEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCS-------NDGSIRLWDL-DGEVLLEMH 216 (745)
T ss_pred eec-CCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeec-------CCceEEEEec-cCceeeeee
Confidence 998 655 89999999999999854 677999999999999999988888 6999999999 899999999
Q ss_pred eeEEEe---eecccC
Q 017421 352 VHILFS---GYLHND 363 (372)
Q Consensus 352 ~h~~~~---~~~~~~ 363 (372)
||..|- .+.++.
T Consensus 217 ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 217 GHTNFVYSISMALSD 231 (745)
T ss_pred ccceEEEEEEecCCC
Confidence 996543 444443
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=5.6e-18 Score=139.56 Aligned_cols=207 Identities=14% Similarity=0.168 Sum_probs=155.0
Q ss_pred cCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC---CCCEEEEEeCCCeEEEE
Q 017421 121 DQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 121 ~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vw 196 (372)
.+|.-.|..+.|-| |.-.|.+++.|.+++|||..+.+....+ ...+.|.+-+|+| .-.++++|..+-.|++.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLC 173 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC 173 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence 56888999999999 6678889999999999999987554432 3334688889998 34578889999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC-eEEEEe---------
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEAN-KLSLRI--------- 265 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~-~~~~~~--------- 265 (372)
|+.+|....... ||...|..+.|+|...+ |++|+.||.|++||++.. -+...+
T Consensus 174 Di~SGs~sH~Ls----------------GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 174 DIASGSFSHTLS----------------GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred eccCCcceeeec----------------cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc
Confidence 999998754444 78999999999998775 479999999999999864 233322
Q ss_pred -----ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCC----CeeEEEeccCCCeEEEE-eeeeE-E
Q 017421 266 -----LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSIN----PCNKYLFNPCNKYLIIY-LILVI-S 330 (372)
Q Consensus 266 -----~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~----~v~~~~~s~~g~~l~~~-~~~~~-~ 330 (372)
.+|.+.|..++|+ .++.++++++.|..+++|+..... .... .-.++++. +-++ ++-++ -
T Consensus 238 ~~~~n~ah~gkvngla~t-Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-----~~~~~s~vfv~~ 311 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWT-SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-----IQSMDSDVFVLF 311 (397)
T ss_pred cccccccccceeeeeeec-ccchhhhhccCccceEEeecccCcccccccccccccccccceEE-----EeecccceEEEE
Confidence 3577889999999 999999999999999999986332 1111 11222222 0011 11111 1
Q ss_pred EeeceEEEeecccceEEEEEeee
Q 017421 331 IYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 331 ~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
-+++.+.|.++..+..++.+.+|
T Consensus 312 p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ecCCeEEEEEccCceEEEeeecc
Confidence 15788889999999999888888
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4e-18 Score=141.86 Aligned_cols=243 Identities=13% Similarity=0.152 Sum_probs=171.0
Q ss_pred ccceeeeecccC-----ccCCCCcc---ccCCceeEeeeeeCCCC----CccccCCCCceEEEEECCCCCEEEEE-eCCC
Q 017421 80 VSTVKMLAGREG-----NYSGRGRF---SAADCCHMLSRYLPVNG----PWPVDQTTSRAYVSQFSADGSLFVAG-FQAS 146 (372)
Q Consensus 80 ~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 146 (372)
+-....|+||.. .|+.++.. .++|+.+++|....-.. ..+..-.-+..+.+.|+||-+-+++. -...
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence 334556777776 45666654 67788889988765321 11222223456788999998776554 4556
Q ss_pred cEEEEeCCCCe---E------EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccc
Q 017421 147 QIRIYDVERGW---K------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLD 217 (372)
Q Consensus 147 ~i~vwd~~~~~---~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 217 (372)
++++|.+...+ . .-.......|+-.+..+-....+.+|++++.|..|.+|+++ |+........
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn------- 227 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN------- 227 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence 89999875321 1 11112234566677888888889999999999999999998 6554333321
Q ss_pred eeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC---CC-----eEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421 218 FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE---AN-----KLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 218 ~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 289 (372)
...-+..+.||+|+++++++.--.|++|.+- .| ..+..+.+|...|..++|+ ++...+++.+
T Consensus 228 ---------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvS 297 (420)
T KOG2096|consen 228 ---------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVS 297 (420)
T ss_pred ---------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEe
Confidence 1245567889999999999988899999863 33 2456788999999999999 9999999999
Q ss_pred CCCeEEEEecc----------ccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 290 DDNLCKVNSVL----------LLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 290 ~dg~i~vwd~~----------~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
.||++++||+. .++ ...+....+..+|+|+.|+++. -..++++...+|+.+
T Consensus 298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-------gs~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-------GSDLKVFASEDGKDY 365 (420)
T ss_pred cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-------CCceEEEEcccCccc
Confidence 99999999986 111 2233345899999999999994 445556655555543
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=9.6e-19 Score=159.43 Aligned_cols=210 Identities=16% Similarity=0.137 Sum_probs=166.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC---CCCEEEEEeCCCeEEEEECCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP---DQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~ 200 (372)
...+.+++.+|+|++||+|..-|.++||++..-+.... ...|...|.++.|+. ..++|++++.|..|+|||...
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~---~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCF---MEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhh---eecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 56789999999999999999999999999987644333 568888999999986 457899999999999999854
Q ss_pred Cceeee--cceeecccccceeccC--------------------------------CCCccccEEEEEEcCCCCEEEEEe
Q 017421 201 GTMESL--ANVTEIHDGLDFSAAD--------------------------------DGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~~--------------------------------~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
.-.... -........+.|.... ..-....++.|+..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 321100 0001111112222221 111235788999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccC
Q 017421 247 SDDCIYVYDLEANKLSLRILA---HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPC 317 (372)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~ 317 (372)
.|..|+|||+.+++..+.+++ |++....+... |.|.+|++.+.|.++.++|.-+ ..+|...|+.+.|.+|
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD-PSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD-PSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND 694 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEEC-CCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc
Confidence 999999999999999999874 66788889998 9999999999999999999864 4589999999999999
Q ss_pred CCeEEEEeeeeEEEeeceEEEeeccc
Q 017421 318 NKYLIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 318 g~~l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
-++|++.+ -|++|.+|.+..
T Consensus 695 CkHlISvs------gDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVS------GDGCIFVWKLPL 714 (1080)
T ss_pred chhheeec------CCceEEEEECch
Confidence 99988775 489999998765
No 136
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.1e-18 Score=140.17 Aligned_cols=221 Identities=14% Similarity=0.094 Sum_probs=154.1
Q ss_pred ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL 177 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (372)
..++.|..++++..... .....-.|..++.+++|.+ ...+++|+-||.|+.+|+.++... ....|..+|.++.+
T Consensus 29 LvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~ 102 (323)
T KOG1036|consen 29 LVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEY 102 (323)
T ss_pred EEEeccCcEEEEeccch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce----eeccCCCceEEEEe
Confidence 34667777888777655 4445557899999999987 456899999999999999988443 36678889999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeec-------ccccce----------ecc--------CCCCccccEEE
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI-------HDGLDF----------SAA--------DDGGYSFGIFS 232 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~----------~~~--------~~~~h~~~i~~ 232 (372)
++-...+++|+.|+.|++||.+............. ...+.. ... ........+.|
T Consensus 103 ~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~ 182 (323)
T KOG1036|consen 103 SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRC 182 (323)
T ss_pred eccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEE
Confidence 99888999999999999999985332211111000 000000 000 01223445666
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC----eEEEEeecCC---------CCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 233 LKFSTDGRELVAGSSDDCIYVYDLEAN----KLSLRILAHT---------SDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 233 ~~~sp~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
+++-|++.-+++++-||.|.+=.++.. .....++.|. -+|++++|+ |--..|+||+.||.|.+||+
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh-p~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH-PIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec-cccceEEecCCCceEEEccC
Confidence 666666666666666676655444433 2223344442 278999999 77889999999999999998
Q ss_pred cc------ccCCCCCeeEEEeccCCCeEEEEe
Q 017421 300 LL------LTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 300 ~~------~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.. +......|.+++|+.+|..||+++
T Consensus 262 ~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 262 FNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 63 234556799999999999999984
No 137
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=173.37 Aligned_cols=210 Identities=13% Similarity=0.116 Sum_probs=164.8
Q ss_pred CCCceEEEEECCCCCE----EEEEeCCCcEEEEeCCC---CeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEE
Q 017421 123 TTSRAYVSQFSADGSL----FVAGFQASQIRIYDVER---GWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVH 194 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~----l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 194 (372)
-..+.+.++|.+.|.. ||.|..||.|.+||... +.....+.....|.+.|..+.|++. +++|++|+.+|.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 4567889999998766 88899999999999875 3333344446788899999999995 45999999999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCC--C
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTS--D 271 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~ 271 (372)
|||+...+.-.... .. .....|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+.+ .
T Consensus 143 iWDlnn~~tP~~~~--~~------------~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG--SQ------------APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred EeccCCcCCCCCCC--CC------------CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccc
Confidence 99998744311110 00 12358999999875 45678899999999999999888777776554 5
Q ss_pred eEEEEEeCCCCCEEEEEeCCC---eEEEEecc-------cccCCCCCeeEEEeccCC-CeEEEEeeeeEEEeeceEEEee
Q 017421 272 VNTVCFGDESGHLIYSGSDDN---LCKVNSVL-------LLTRSINPCNKYLFNPCN-KYLIIYLILVISIYSPNILLDN 340 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~-------~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~~~~d~~i~lw~ 340 (372)
+..++|+|.+...|++++.|. .|.+||+| .++.|...|.++.|++.+ ++|+++. -|++|.+|+
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN 282 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWN 282 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEec
Confidence 778999976777888887664 59999987 456899999999999988 5555553 599999999
Q ss_pred cccceEEEEEee
Q 017421 341 YFLLRTFYSFMV 352 (372)
Q Consensus 341 ~~~~~~~~~~~~ 352 (372)
..+++.+..+-.
T Consensus 283 ~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 283 PNTGEVLGELPA 294 (1049)
T ss_pred CCCceEeeecCC
Confidence 999998887754
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.4e-18 Score=152.56 Aligned_cols=207 Identities=14% Similarity=0.188 Sum_probs=165.7
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
+-.+..|.+++|+.+.+.||++-.+|.|.||++..+......+.. +....|.+++|++ +..|++.+.+|.|..||+-+
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEeccc
Confidence 334778999999999999999999999999999998776665544 4455799999995 55688888999999999998
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--eecCCCCeEEEEEe
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR--ILAHTSDVNTVCFG 278 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s 278 (372)
++....... ..+.|.+++.+|.+..++.|+.||.+..++...++.... +....+.|.++.|+
T Consensus 100 lk~~~~~d~----------------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~ 163 (691)
T KOG2048|consen 100 LKQKYNIDS----------------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN 163 (691)
T ss_pred CceeEEecC----------------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEec
Confidence 876444332 234899999999999999999999888888887765433 33456899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeccccc--------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 279 DESGHLIYSGSDDNLCKVNSVLLLT--------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~~~~--------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+++..|+.|+.||.|++||..+.. ....-|+++.|-.++. |+++. -.|+|++||...+
T Consensus 164 -~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD------S~G~V~FWd~~~g 235 (691)
T KOG2048|consen 164 -PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD------SAGTVTFWDSIFG 235 (691)
T ss_pred -CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec------CCceEEEEcccCc
Confidence 999999999999999999987322 1334578888877654 44442 3588999999999
Q ss_pred eEEEEEeee
Q 017421 345 RTFYSFMVH 353 (372)
Q Consensus 345 ~~~~~~~~h 353 (372)
..+.++..|
T Consensus 236 TLiqS~~~h 244 (691)
T KOG2048|consen 236 TLIQSHSCH 244 (691)
T ss_pred chhhhhhhh
Confidence 999888776
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=4.3e-18 Score=139.86 Aligned_cols=199 Identities=14% Similarity=0.243 Sum_probs=158.0
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee---cccCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL---AKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 196 (372)
.+-+.|.|+.|.|++..+++-. |..|.+|++..+..+..... ..++....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 4567999999999999998876 68899999998755322221 123455688999999 78877765 57899999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 274 (372)
|+++......++ . .|...|..+.|+|+-+ +|++++.||.|++||.+.. .++..+.+|...|.+
T Consensus 199 D~RT~~~~~sI~--d-------------AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 199 DLRTMKKNNSIE--D-------------AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred Eccchhhhcchh--h-------------hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 999876533332 1 3666899999999865 6688999999999999864 478899999999999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEecc-----------------------------------cccCCCCCeeEEEeccCCC
Q 017421 275 VCFGDESGHLIYSGSDDNLCKVNSVL-----------------------------------LLTRSINPCNKYLFNPCNK 319 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~dg~i~vwd~~-----------------------------------~~~~~~~~v~~~~~s~~g~ 319 (372)
+.|+|...++|++|+.|..|.+|... +...|...|++++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99998888999999999999999863 1236778999999999888
Q ss_pred eEEEEeeeeEEEeeceEEEeecc
Q 017421 320 YLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 320 ~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+++++ -.|||.+.+=++.
T Consensus 344 WiFAS-----LSYDGRviIs~V~ 361 (370)
T KOG1007|consen 344 WIFAS-----LSYDGRVIISSVP 361 (370)
T ss_pred eeEEE-----eccCceEEeecCC
Confidence 88876 2389888876654
No 140
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.3e-18 Score=150.60 Aligned_cols=200 Identities=16% Similarity=0.117 Sum_probs=152.9
Q ss_pred CCceEEEEECCC-------CCEEEEEeCCCcEEEEeCCCCeEEEEee------------------ecccCCcceEEEEEC
Q 017421 124 TSRAYVSQFSAD-------GSLFVAGFQASQIRIYDVERGWKIQKDI------------------LAKSLRWTVTDTSLS 178 (372)
Q Consensus 124 ~~~v~~~~~s~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------~~~~~~~~v~~~~~~ 178 (372)
+....|++|..- |+++|.|+.|..|.|||+.--..+.... ...+|...|.+++|+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 344467776432 6899999999999999987432221111 123677788899998
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEEC
Q 017421 179 PD-QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL 256 (372)
Q Consensus 179 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~ 256 (372)
.. .+.|++|+.|.+|++||+.++++..... -|...|.++.|+|. ..+|++|+.|++|.+.|+
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 85 4568899999999999999999866655 25679999999996 578899999999999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEE-EEeeee
Q 017421 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLI-IYLILV 328 (372)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~ 328 (372)
+........-.-.+.|-.++|.|.....++++..||+|+-+|+| +++.|..+|.++++++....+. +++
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--- 393 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--- 393 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---
Confidence 95433222223457899999997777888899999999999998 4568999999999998866544 433
Q ss_pred EEEeeceEEEeecccce
Q 017421 329 ISIYSPNILLDNYFLLR 345 (372)
Q Consensus 329 ~~~~d~~i~lw~~~~~~ 345 (372)
-|+.+++|++...+
T Consensus 394 ---~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 394 ---TDKVVKLWKFDVDS 407 (463)
T ss_pred ---ccceEEEEeecCCC
Confidence 47888999876544
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.4e-17 Score=136.63 Aligned_cols=207 Identities=15% Similarity=0.118 Sum_probs=145.2
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEE
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 196 (372)
..+|..-|.++.|.+-|+++|+|+.|++|+|||...+. ........+.|.+.|..+.|.+ -|+.+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999975432 2233334668888999999977 58999999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC------eEEEEee--
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN------KLSLRIL-- 266 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~------~~~~~~~-- 266 (372)
.-................ . .......|+.+.|.|. |-.|++++.||.++||+.-.. +....+.
T Consensus 89 EE~~~~~~~~~~~Wv~~t--t-----l~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRT--T-----LVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred eecccccccccceeEEEE--E-----eecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc
Confidence 863221111000000000 0 0013358999999995 667899999999999986543 2223332
Q ss_pred -----cCCCCeEEEEEeCC--CCCEEEEEeCC-----CeEEEEecc----------cccCCCCCeeEEEeccC-C---Ce
Q 017421 267 -----AHTSDVNTVCFGDE--SGHLIYSGSDD-----NLCKVNSVL----------LLTRSINPCNKYLFNPC-N---KY 320 (372)
Q Consensus 267 -----~~~~~v~~~~~sp~--~~~~l~s~~~d-----g~i~vwd~~----------~~~~~~~~v~~~~~s~~-g---~~ 320 (372)
.+..+..|+.|+|. ...+||+|+.+ +.+.||... ++.+|..+|+.++|.|+ | ..
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~ 241 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHL 241 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceee
Confidence 35567889999832 24578888765 478888764 45589999999999998 3 45
Q ss_pred EEEEeeeeEEEee
Q 017421 321 LIIYLILVISIYS 333 (372)
Q Consensus 321 l~~~~~~~~~~~d 333 (372)
||+++.+.++||.
T Consensus 242 lAvA~kDgv~I~~ 254 (361)
T KOG2445|consen 242 LAVATKDGVRIFK 254 (361)
T ss_pred EEEeecCcEEEEE
Confidence 6777633344443
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=4.5e-18 Score=155.14 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=163.6
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-----------CCEEEEEeCCCeEEEE
Q 017421 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----------QRHLVYASMSPIVHIV 196 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~vw 196 (372)
-++.|++....|.+...|..++|||++.-..+.+......|..-|+++.--|- ...+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 35689999999999999999999999986655554445556656666655441 2348899999999999
Q ss_pred ECCCCceeeecc---eeecccccceeccC------------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421 197 DVGSGTMESLAN---VTEIHDGLDFSAAD------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (372)
Q Consensus 197 d~~~~~~~~~~~---~~~~~~~~~~~~~~------------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd 255 (372)
|+..+....+.. +......+.+...+ .-+....+.+++.+|+|++|++|...|+++||+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 998633221110 00000001111110 013456899999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCC--CeEE-E
Q 017421 256 LEANKLSLRILAHTSDVNTVCFGDES--GHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCN--KYLI-I 323 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g--~~l~-~ 323 (372)
+..-+....+.+|+..|.|+.|+-|+ .++||+++.|..|+|||+. ++.+|...|+++.|..+| ..++ +
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 99988888889999999999998443 4689999999999999985 566788888888887766 2232 3
Q ss_pred EeeeeE----------------------------------------EEeeceEEEeecccceEEEEEeee
Q 017421 324 YLILVI----------------------------------------SIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 324 ~~~~~~----------------------------------------~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
|.|+.+ ...|.+|++++..+|+..++|.+-
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence 323211 013678999999999999999763
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.4e-18 Score=150.87 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=161.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (372)
..-.|++......++++|+..+.|+|||++.....+ .+++|+..|+++.++....+|++++..|.|.|..+.++...
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t 156 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT 156 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence 355666666667899999999999999999553333 37789999999999999999999999999999999887643
Q ss_pred eecceeecccccceeccCCCCccccEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEeCCCC
Q 017421 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-LVAGSSDDCIYVYDLEANKLSLRI-LAHTSDVNTVCFGDESG 282 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~ 282 (372)
..+... ....|.-+.|+|..++ |.+++.+|.|.+||+....+++.+ ..|..+...++|+|.+.
T Consensus 157 t~f~~~---------------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne 221 (673)
T KOG4378|consen 157 TTFTID---------------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE 221 (673)
T ss_pred cceecC---------------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc
Confidence 333211 1235778999998765 467888999999999977766554 47999999999998888
Q ss_pred CEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeee
Q 017421 283 HLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVH 353 (372)
Q Consensus 283 ~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h 353 (372)
.+|++.+.|..|.+||.+.-. ....+.+.++|.++|.+|++|. -.|.|..||....+ ++...-+|
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~------s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN------SKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec------CCceEEEEecccCCCCceEeeec
Confidence 999999999999999998432 4567889999999999999995 35666666665443 44444444
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=7.5e-18 Score=151.89 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=160.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 196 (372)
.....|...|..+.|.|-...|++++.|.++++||+.+....... ...+|...|.+++|.| +...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 445679999999999996678899999999999999988666543 4678999999999999 45678899999999999
Q ss_pred ECCCCceeeeccee----ecccccceecc--------CCCCccccEEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCe
Q 017421 197 DVGSGTMESLANVT----EIHDGLDFSAA--------DDGGYSFGIFS---LKFSTDGRELVAGSS-DDCIYVYDLEANK 260 (372)
Q Consensus 197 d~~~~~~~~~~~~~----~~~~~~~~~~~--------~~~~h~~~i~~---~~~sp~~~~l~s~s~-dg~i~iwd~~~~~ 260 (372)
|++-.......... ..+.+-. .+. ....+...|.+ +.+..|...||+++. |+.|+|||+++..
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCC-CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 99765422111111 1111100 000 01123344444 445567788988877 9999999999765
Q ss_pred EEEE--------eecC---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccccC-----CCC-----CeeEEEeccCCC
Q 017421 261 LSLR--------ILAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLTR-----SIN-----PCNKYLFNPCNK 319 (372)
Q Consensus 261 ~~~~--------~~~~---~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~-----~v~~~~~s~~g~ 319 (372)
.... +..| .-.+.++... ..|.+|++.+.|+.|.+|+++.+.. +.. --..-..+|++.
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lD-ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~ 330 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILD-SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC 330 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEec-CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc
Confidence 3322 2223 2356777777 7788888888899999999985431 111 112224689999
Q ss_pred eEEEEeeeeEEEeeceEEEeecccce-EEEEEeeeEE
Q 017421 320 YLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVHIL 355 (372)
Q Consensus 320 ~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h~~ 355 (372)
+|++++ +|...++|.+.+.. ....+.||..
T Consensus 331 ~l~SgS------sd~~ayiw~vs~~e~~~~~l~Ght~ 361 (720)
T KOG0321|consen 331 SLLSGS------SDEQAYIWVVSSPEAPPALLLGHTR 361 (720)
T ss_pred eEeccC------CCcceeeeeecCccCChhhhhCcce
Confidence 999998 89999999988765 3566777754
No 145
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=4.8e-18 Score=154.40 Aligned_cols=220 Identities=13% Similarity=0.140 Sum_probs=171.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
..+.||...|..++|+|.|.+|++.+.|.+-++|-.- ..........+.-|...++|++|-+....+++|.....+++|
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF 434 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVF 434 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeee
Confidence 4568999999999999999999999999999999765 222334444456777789999999876778888888899999
Q ss_pred ECCCCceeeecc---------------------------ee--eccccc----------cee------ccC---------
Q 017421 197 DVGSGTMESLAN---------------------------VT--EIHDGL----------DFS------AAD--------- 222 (372)
Q Consensus 197 d~~~~~~~~~~~---------------------------~~--~~~~~~----------~~~------~~~--------- 222 (372)
+....-...+.. .. ....+. ... |..
T Consensus 435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL 514 (764)
T KOG1063|consen 435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL 514 (764)
T ss_pred cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence 852111000000 00 000000 000 000
Q ss_pred ------CCCccccEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421 223 ------DGGYSFGIFSLKFSTDGRELVAGSSD-----DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (372)
Q Consensus 223 ------~~~h~~~i~~~~~sp~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d 291 (372)
..||...|++++.+|+++++|++... ..|++|+..+......+.+|.-.|+.++|| |||++|++.+.|
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS-pdg~~LLsvsRD 593 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS-PDGRYLLSVSRD 593 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC-CCCcEEEEeecC
Confidence 04899999999999999999988753 359999999999888999999999999999 999999999999
Q ss_pred CeEEEEecc----------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 292 NLCKVNSVL----------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 292 g~i~vwd~~----------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+++.+|... ..+.|...|+.+.|+|++.++++++ -|..+++|.....
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDL 650 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCc
Confidence 999999874 3568999999999999999999886 6889999988777
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.6e-18 Score=150.82 Aligned_cols=243 Identities=14% Similarity=0.112 Sum_probs=167.7
Q ss_pred CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE--EEEEeCC
Q 017421 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH--LVYASMS 190 (372)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d 190 (372)
|......+.+|++.|.++...|.|.+|++|+.||+|+||.+.+++++....... .|.+++|+|.+.. |+++-..
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc----eeEEEEecCCCCceeEEEEecC
Confidence 445556789999999999999999999999999999999999998888654433 5888888885542 3333222
Q ss_pred --------------------------------CeEEEEECC------CCceeeecce-----eeccc-ccc---eeccC-
Q 017421 191 --------------------------------PIVHIVDVG------SGTMESLANV-----TEIHD-GLD---FSAAD- 222 (372)
Q Consensus 191 --------------------------------g~i~vwd~~------~~~~~~~~~~-----~~~~~-~~~---~~~~~- 222 (372)
+.+..|.-. .+-+..+... ...|. |-- ..+..
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 122233321 1101111110 00010 000 00000
Q ss_pred -----------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421 223 -----------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (372)
Q Consensus 223 -----------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l 285 (372)
-..-.+.|.++.|+|...+|++++. ..|+|||+.....+..+......|..++.+ |.|..|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnl 622 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNL 622 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeE
Confidence 0112357889999999999988885 679999999887777776677789999999 999999
Q ss_pred EEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEee-eeEEEeeceEEEeec--ccceEEEEEeeeEE
Q 017421 286 YSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLI-LVISIYSPNILLDNY--FLLRTFYSFMVHIL 355 (372)
Q Consensus 286 ~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~d~~i~lw~~--~~~~~~~~~~~h~~ 355 (372)
+.|+.|+.++.+|+. ++..|...+++++|++.-.+++++++ +.+.++-+.|+--=+ ..--+++-+.+|..
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 999999999999986 45689999999999999999999864 555555555431111 11236777888876
Q ss_pred E--eeecc
Q 017421 356 F--SGYLH 361 (372)
Q Consensus 356 ~--~~~~~ 361 (372)
. .|.|+
T Consensus 703 ~~~~gVLd 710 (733)
T KOG0650|consen 703 TNDLGVLD 710 (733)
T ss_pred ecccceEe
Confidence 6 46663
No 147
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=144.91 Aligned_cols=194 Identities=11% Similarity=0.140 Sum_probs=155.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCC-EEEEEeCCCeEEEEECC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVG 199 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~ 199 (372)
-.+.|+++.|+|....|++++.|++++||.+.... .+.. ..-...+|.+..|.|+|. .+++++....++.||+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS---~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQS---IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhee---eeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 46789999999999999999999999999987542 2222 222334899999999999 88999999999999999
Q ss_pred CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC
Q 017421 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD 279 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 279 (372)
+.+...+....... ...+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+
T Consensus 289 ~ak~~k~~~~~g~e-------------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs- 353 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE-------------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS- 353 (514)
T ss_pred ccccccccCCCCcc-------------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe-
Confidence 88865444322111 1256677889999999999999999999999999988887 56889999999
Q ss_pred CCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEee-eeEEEeec
Q 017421 280 ESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLI-LVISIYSP 334 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~-~~~~~~d~ 334 (372)
.+++.|++++.+|.|.+||++... ...-.-++++.+++|.++|+|++ +.+.|||+
T Consensus 354 Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 354 SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 999999999999999999998432 22223477888999999999974 44666663
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=4.4e-17 Score=143.28 Aligned_cols=215 Identities=14% Similarity=0.129 Sum_probs=161.7
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------------
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK---------------------- 161 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------- 161 (372)
..+.+|..-...-......|.+.|.+++...+|.+|- |+.|+.|..||-.-. .++.
T Consensus 267 G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~-k~r~~elPe~~G~iRtv~e~~~di~v 344 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYR-KLRETELPEQFGPIRTVAEGKGDILV 344 (626)
T ss_pred ceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEecccccc-ccccccCchhcCCeeEEecCCCcEEE
Confidence 3455665544333444458999999999999998554 999999999983211 1100
Q ss_pred ----------------eeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCC
Q 017421 162 ----------------DILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGG 225 (372)
Q Consensus 162 ----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
.....+|....+.++.+|+..++++++.|+.+++|+ ..+.......
T Consensus 345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---------------- 406 (626)
T KOG2106|consen 345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---------------- 406 (626)
T ss_pred eeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe----------------
Confidence 011236666788999999999999999999999999 3333222221
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc----
Q 017421 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---- 301 (372)
Q Consensus 226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---- 301 (372)
..++.|+.|+|.| .+|.|+..|...+.|.++...+..-.. ..++++++|+ |+|.+||.|+.|+.|++|-+..
T Consensus 407 -~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 407 -EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred -cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEecCCCeEEEEEECCCCcE
Confidence 1378999999999 999999999999999998655544444 8899999999 9999999999999999998862
Q ss_pred ----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421 302 ----LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY 348 (372)
Q Consensus 302 ----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~ 348 (372)
.+.+..+|+.+.|++|++++.+-+ -|-.|..|.....+.+.
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWKPSECKQIT 527 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEecc------CceEEEEEccccCcccc
Confidence 224458999999999999998775 36678888555444443
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.78 E-value=1.1e-17 Score=145.41 Aligned_cols=224 Identities=15% Similarity=0.122 Sum_probs=164.9
Q ss_pred ceeEeeeee---C-CCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 104 CCHMLSRYL---P-VNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 104 ~~~~~~~~~---~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
..+-+|++- + ......+..|.++|.++.|+| +-..+++.++||+|+.-|++...... ..........+.++.|+
T Consensus 210 G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~-v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 210 GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE-VLSLDTDNIWFSSLDFS 288 (498)
T ss_pred CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHH-HhhcCccceeeeecccc
Confidence 457788883 2 223566789999999999999 55778999999999999998763221 11122233457888999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~ 257 (372)
.+...++.+..=|.+.+||.+++.... .... -|...|+.++++|.. .+||+++.|++++|||++
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~-------------lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEY--ENLR-------------LHKKKITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccc--hhhh-------------hhhcccceeecCCCCchheeecccCcceeeeehh
Confidence 988888888887899999999876421 1111 255589999999976 567999999999999998
Q ss_pred CCe----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCC----C--CeeEEEeccCC
Q 017421 258 ANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSI----N--PCNKYLFNPCN 318 (372)
Q Consensus 258 ~~~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~----~--~v~~~~~s~~g 318 (372)
.-. ++.....|...|.+..|||.+|. |++.+.|..|+|||...+. .|. . ......|.|+.
T Consensus 354 ~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 354 QLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred hhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc
Confidence 532 22333469999999999955555 9999999999999984111 111 1 23456899999
Q ss_pred CeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 319 KYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 319 ~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
.+++++. |...|-++|-..++.+-.+
T Consensus 433 ~li~vg~------~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 433 NLIVVGR------YPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred cEEEEec------cCcceeEEcCCCCEEeeec
Confidence 9998886 5666778888777766554
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.4e-17 Score=139.84 Aligned_cols=191 Identities=13% Similarity=0.144 Sum_probs=147.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
..+|++...|.|++||..+++.+.. .++++..+..+.|.. ....+.+++.||.|++||++..............
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-
Confidence 5688899999999999999877766 556666677888876 4567889999999999999987654444322211
Q ss_pred ccceeccCCCCccccEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeE-EEEe-ecCCCCeEEEEEeCCCCCEEEEE
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS----DDCIYVYDLEANKL-SLRI-LAHTSDVNTVCFGDESGHLIYSG 288 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~sp~~~~~l~s~ 288 (372)
..+..+++.+-.++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+|.+.++|++|
T Consensus 117 ------------~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ------------GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ------------CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 136777887767888888864 56799999998775 4444 47999999999999999999999
Q ss_pred eCCCeEEEEecccc---------cCCCCCeeEEEeccCC--CeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 289 SDDNLCKVNSVLLL---------TRSINPCNKYLFNPCN--KYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 289 ~~dg~i~vwd~~~~---------~~~~~~v~~~~~s~~g--~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
|.||.|.+||++.- -.+...|..+.|..++ +..... ...+..+|++..+.+...+
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT-------H~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT-------HMETFAIYELEDGSEETWL 250 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE-------ccCceeEEEccCCChhhcc
Confidence 99999999999732 2567789999999988 544444 4667778888777765544
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.77 E-value=6e-17 Score=133.29 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=165.8
Q ss_pred ccccCCceeEeeeeeCCCCCcc---------ccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421 98 RFSAADCCHMLSRYLPVNGPWP---------VDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 167 (372)
.+...++.+++|+.-+...... -..+..++++.+|+. +-++|.+.+-|.+..|||++++..-.....+-.
T Consensus 115 lLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 115 LLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 4566778899999885433222 245678999999988 678899999999999999998733112223457
Q ss_pred CCcceEEEEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEE
Q 017421 168 LRWTVTDTSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAG 245 (372)
Q Consensus 168 ~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~ 245 (372)
|..+|..++|...+ +.+++.+.||.++++|++.-....+..- .. ....+...++|++. -+++|+-
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE----------~p---~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE----------DP---SPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec----------CC---CCCCcceeeccCcCCchHHhhh
Confidence 88899999999854 5688999999999999987653222211 10 11347888999885 4677776
Q ss_pred eCC-CeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------CCCCCeeEE
Q 017421 246 SSD-DCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----------RSINPCNKY 312 (372)
Q Consensus 246 s~d-g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~v~~~ 312 (372)
..| ..|.|.|++.. .++..+.+|.+.|+.++|.|..+..|++++.|....+||+.... .....|+.+
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi 341 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQI 341 (364)
T ss_pred hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeee
Confidence 555 46999999865 57888999999999999998889999999999999999997433 245678999
Q ss_pred EeccC-CCeEEEEeeeeE
Q 017421 313 LFNPC-NKYLIIYLILVI 329 (372)
Q Consensus 313 ~~s~~-g~~l~~~~~~~~ 329 (372)
.|++. +.+++++.++.+
T Consensus 342 ~Ws~~~~Dwiai~~~kkl 359 (364)
T KOG0290|consen 342 QWSSSQPDWIAICFGKKL 359 (364)
T ss_pred eecccCCCEEEEEecCee
Confidence 99964 788998854443
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.5e-17 Score=142.13 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=147.3
Q ss_pred CCCEEEEE---eCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421 135 DGSLFVAG---FQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (372)
Q Consensus 135 ~~~~l~~~---~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 209 (372)
+.++||+. +..|...|.-+.. |+.-...-...+|.++|..++|+| +...||+|+.|.+|.||++-.+.......
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt- 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT- 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-
Confidence 45555542 3344555555543 333333445679999999999999 77789999999999999997665422111
Q ss_pred eecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (372)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 288 (372)
... ....||...|.-++|+|.. +.|++++.|.+|.+||+.+++.+.++. |...|+++.|+ .+|.+|++.
T Consensus 122 -epv-------v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn-~dGs~l~Tt 191 (472)
T KOG0303|consen 122 -EPV-------VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFN-RDGSLLCTT 191 (472)
T ss_pred -cce-------EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEec-cCCceeeee
Confidence 000 0012688899999999974 678899999999999999999988887 99999999999 999999999
Q ss_pred eCCCeEEEEeccccc------CC-CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 289 SDDNLCKVNSVLLLT------RS-INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 289 ~~dg~i~vwd~~~~~------~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
+.|..|||||.++.. .| ......+.|-.+|.++.++ +-+.-+.++-|||..+..+-
T Consensus 192 ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG---fsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG---FSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec---cccccccceeccCcccccCc
Confidence 999999999998543 23 2345667888888855555 22445678888887666543
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=4.4e-17 Score=135.93 Aligned_cols=244 Identities=16% Similarity=0.126 Sum_probs=172.4
Q ss_pred cCCCCcc---ccCCceeEeeeeeCCC------CCccc-------cCCCCceEEEEEC-------CCCCEEEEEeCCCcEE
Q 017421 93 YSGRGRF---SAADCCHMLSRYLPVN------GPWPV-------DQTTSRAYVSQFS-------ADGSLFVAGFQASQIR 149 (372)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~ 149 (372)
+++++.- .+.+.++.+|++.+.- .+..+ ......|+..+|- |+..++++.+.+.-|+
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 4555532 5556677777765421 11111 1235667777774 6788999999999999
Q ss_pred EEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeCCCeEEEEEC-CCCceeeecceeecccccceeccCCCC
Q 017421 150 IYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIVDV-GSGTMESLANVTEIHDGLDFSAADDGG 225 (372)
Q Consensus 150 vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
+||.-+++..... ....|.. ...+++|+|||.+|++| ....|+++|+ +.|..-........ ...+
T Consensus 137 ~wdaftG~lraSy-~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~---------~k~g 205 (406)
T KOG2919|consen 137 LWDAFTGKLRASY-RAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK---------GKFG 205 (406)
T ss_pred eeeccccccccch-hhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc---------cccc
Confidence 9999998544332 2333433 34689999999999876 5678999999 55543222221111 0114
Q ss_pred ccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc--
Q 017421 226 YSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL-- 301 (372)
Q Consensus 226 h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~-- 301 (372)
..+.|.+++|+|-. +.++.|+....+-||.-..+.++..+-+|.+.|+.++|. ++|+.|++|. .|..|..||+|.
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~-edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC-EDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec-cCcCeecccccCCCeEEEEeehhcc
Confidence 56689999999954 588999999999999988889999999999999999999 9999999997 478899999983
Q ss_pred -----ccCCCC---CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc-ceEEEEEeeeE
Q 017421 302 -----LTRSIN---PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL-LRTFYSFMVHI 354 (372)
Q Consensus 302 -----~~~~~~---~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~-~~~~~~~~~h~ 354 (372)
+..|.. .-.-+...|+|++|+++. -|+.|++||... +.++..+..|.
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~------tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGD------TDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccC------CCccEEEEecCCCCCccccccccc
Confidence 233333 223345578999999984 378888888877 55555555443
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2e-18 Score=165.15 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=163.5
Q ss_pred CCceeEeeeeeCC---C---CCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEE
Q 017421 102 ADCCHMLSRYLPV---N---GPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTD 174 (372)
Q Consensus 102 ~~~~~~~~~~~~~---~---~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 174 (372)
.|..+.+|+.... . .......|.+.|.+++|++.. ++||+|+.||.|.|||+.+.+.....- .....+.|.+
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~ 166 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKC 166 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceE
Confidence 3445666666553 1 123457899999999999955 599999999999999998743322211 2224457999
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCC---
Q 017421 175 TSLSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDD--- 249 (372)
Q Consensus 175 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg--- 249 (372)
++|+..- ..|++++.+|.+.|||++..+. +..+.... ....+..++|+|++ ..|+++++|.
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~p--ii~ls~~~------------~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKP--IIKLSDTP------------GRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCc--ccccccCC------------CccceeeeeeCCCCceeeeeecCCCCCc
Confidence 9999854 4577888899999999998754 22222211 11357899999986 4566666543
Q ss_pred eEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCC-eE
Q 017421 250 CIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNK-YL 321 (372)
Q Consensus 250 ~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~-~l 321 (372)
.|.+||++.- .+++.+.+|...|.++.|++.|.++|++++.|+.|.+|+..+.+ ....++..+.|+|..- .+
T Consensus 233 viqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred eeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchh
Confidence 5999999854 46777889999999999997788999999999999999998633 4567899999999876 44
Q ss_pred EEEeeeeEEEeeceEEEeecccce
Q 017421 322 IIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 322 ~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
++++ +|+.|.++.+..+.
T Consensus 313 A~as------fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 313 AAAS------FDGKISIYSLQGTD 330 (1049)
T ss_pred hhhe------eccceeeeeeecCC
Confidence 4443 57777777665554
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=9.2e-18 Score=140.21 Aligned_cols=219 Identities=10% Similarity=0.068 Sum_probs=163.5
Q ss_pred eeEeeeeeCCCCCccccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE
Q 017421 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH 183 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (372)
.+++.+....+....+.+|...|+.+.++|+. +++++++.|..|++|++++..++..+-...+|...|.++.|++++.+
T Consensus 116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~ 195 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR 195 (385)
T ss_pred EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence 34566666666677889999999999999965 78899999999999999999998887778899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceeeecceeec----cc-------ccceec-cCCCCccccEEEEEEcCCCCEEEEEeCCCeE
Q 017421 184 LVYASMSPIVHIVDVGSGTMESLANVTEI----HD-------GLDFSA-ADDGGYSFGIFSLKFSTDGRELVAGSSDDCI 251 (372)
Q Consensus 184 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~-------~~~~~~-~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i 251 (372)
|++++.|.++++|++...+.......... .. ...|.. ....-|...|.|+.|- |.++++-+.++.|
T Consensus 196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI 273 (385)
T KOG1034|consen 196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAI 273 (385)
T ss_pred eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceE
Confidence 99999999999999985443222111100 00 000100 0224588888888887 6789998889999
Q ss_pred EEEECC-CCe-------------EEEEeecCCCCeEEEEEe-CCCCCEEEEEeCCCeEEEEeccccc----------CCC
Q 017421 252 YVYDLE-ANK-------------LSLRILAHTSDVNTVCFG-DESGHLIYSGSDDNLCKVNSVLLLT----------RSI 306 (372)
Q Consensus 252 ~iwd~~-~~~-------------~~~~~~~~~~~v~~~~~s-p~~~~~l~s~~~dg~i~vwd~~~~~----------~~~ 306 (372)
..|-.. -.+ .+..+......|.-+.|. .+-++.||.|...|.|.+||++... ...
T Consensus 274 ~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~ 353 (385)
T KOG1034|consen 274 VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG 353 (385)
T ss_pred EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc
Confidence 999762 111 233344455667666554 2668899999999999999998433 234
Q ss_pred CCeeEEEeccCCCeEEEEe
Q 017421 307 NPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 307 ~~v~~~~~s~~g~~l~~~~ 325 (372)
..|...+|+.||..|+...
T Consensus 354 ~tVRQ~sfS~dgs~lv~vc 372 (385)
T KOG1034|consen 354 STVRQTSFSRDGSILVLVC 372 (385)
T ss_pred ceeeeeeecccCcEEEEEe
Confidence 5689999999999887653
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=2.6e-17 Score=149.75 Aligned_cols=186 Identities=19% Similarity=0.226 Sum_probs=146.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 191 (372)
...+.||...|++++.+|+|+++|+++... .|++|+..+-.... .+.+|.-.|+.++|+||+++|++.+.|.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh---eecccceEEEEEEECCCCcEEEEeecCc
Confidence 356789999999999999999999987653 58999987654433 3678988999999999999999999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEE--eec
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN--KLSLR--ILA 267 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~--~~~~~--~~~ 267 (372)
++.+|........... |.. .+.|+-.|....|+|++.+|+|+|.|.+|++|..... +.+.. ...
T Consensus 595 t~sl~~~~~~~~~e~~----------fa~--~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFR----------FAC--LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred eEEeeeeecccchhhh----------hcc--ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 9999998544321111 000 1257789999999999999999999999999999877 43333 235
Q ss_pred CCCCeEEEEEeCCCCC----EEEEEeCCCeEEEEecc------c------------ccCCCCCeeEEEeccC
Q 017421 268 HTSDVNTVCFGDESGH----LIYSGSDDNLCKVNSVL------L------------LTRSINPCNKYLFNPC 317 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~----~l~s~~~dg~i~vwd~~------~------------~~~~~~~v~~~~~s~~ 317 (372)
+..+|++++|.|-+.. .+++|-..|.|.+|... + ...+...|..+.|.|.
T Consensus 663 ~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 663 FSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred cCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 7889999999864443 78889899999999854 1 1156677899999975
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=3.4e-18 Score=154.02 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=147.4
Q ss_pred ECCCCCEEEE--EeCCCcEEEEeCCCCeEEEEee-ecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 132 FSADGSLFVA--GFQASQIRIYDVERGWKIQKDI-LAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 132 ~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
|+.+..++|+ .+..|.|-||++.....+..-. ...-....|+.+.|.| |...|++++.||.|++|.+..+......
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 4445555554 4556899999998653333211 1112234699999999 8889999999999999999876643332
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~ 286 (372)
......- .+|...|+++.|+|= ...|++++.|.+|++||+.+++....+.+|.+.|..++|+ |+|+.++
T Consensus 667 ~tPe~~l---------t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS-pdGr~~A 736 (1012)
T KOG1445|consen 667 MTPEKIL---------TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS-PDGRRIA 736 (1012)
T ss_pred CCcceee---------ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC-CCCccee
Confidence 2221111 157789999999994 4688999999999999999999989999999999999999 9999999
Q ss_pred EEeCCCeEEEEeccccc----CC----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 287 SGSDDNLCKVNSVLLLT----RS----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 287 s~~~dg~i~vwd~~~~~----~~----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+.+.||+|++|..+... .. ...-..+.|..+|+++++..-. +....+|.+||+.+.
T Consensus 737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfd--k~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFD--KSSERQVQMYDAQTL 800 (1012)
T ss_pred eeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccc--ccchhhhhhhhhhhc
Confidence 99999999999987432 11 2334678999999998765311 112355666665543
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=4.5e-17 Score=142.93 Aligned_cols=200 Identities=17% Similarity=0.137 Sum_probs=162.4
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+...++.+|++........+.+|...|+++.++....+||+++..|.|.|..+.++.....+ ..+....|.-+.|+|
T Consensus 97 gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f--~~~sgqsvRll~ys~ 174 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF--TIDSGQSVRLLRYSP 174 (673)
T ss_pred cCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce--ecCCCCeEEEeeccc
Confidence 455567889998866666778999999999999999999999999999999999887544332 223344577999999
Q ss_pred CCCE-EEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECC
Q 017421 180 DQRH-LVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 180 ~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~ 257 (372)
..++ |.+++.+|.|.+||+...... ..... .|..+...|+|+|.. .+|++.+.|..|.+||++
T Consensus 175 skr~lL~~asd~G~VtlwDv~g~sp~--~~~~~-------------~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 175 SKRFLLSIASDKGAVTLWDVQGMSPI--FHASE-------------AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ccceeeEeeccCCeEEEEeccCCCcc--cchhh-------------hccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 7665 567889999999999876542 22222 477899999999965 567888999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCC
Q 017421 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCN 318 (372)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g 318 (372)
.......+. ...+...++|. ++|.+|+.|+..|.|..||+|.. ..|...|++++|-|.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeec-CCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 877666665 55789999999 99999999999999999999843 3788899999998864
No 159
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=6e-17 Score=135.00 Aligned_cols=196 Identities=16% Similarity=0.136 Sum_probs=156.1
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC-CCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV-GSG 201 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~ 201 (372)
...+|+|.+|++|+..+|++.....|.||.............+..|...|+.+.|+|..+.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4678999999999999999999999999998877655566668889999999999999999999999999999998 444
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE----EEEeecCCCCeEEEEE
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL----SLRILAHTSDVNTVCF 277 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~ 277 (372)
+-.....+.. +...++++.|+|.++.|++|+....|.||-.+..+. .+.-+.+...|++++|
T Consensus 89 ~WkptlvLlR--------------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW 154 (361)
T KOG1523|consen 89 TWKPTLVLLR--------------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW 154 (361)
T ss_pred eeccceeEEE--------------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec
Confidence 4333333322 334899999999999999999999999988764331 1222356778999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEecc------------------------cccCCCCCeeEEEeccCCCeEE-EEeeeeEEEe
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVL------------------------LLTRSINPCNKYLFNPCNKYLI-IYLILVISIY 332 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~------------------------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~~ 332 (372)
+ |++-+|++|+.|+.+||+..- ......+.+..+.|+|+|..|+ ++.+..+.+-
T Consensus 155 h-pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 155 H-PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred c-CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 9 999999999999999999852 0113457899999999999988 4544444443
Q ss_pred e
Q 017421 333 S 333 (372)
Q Consensus 333 d 333 (372)
|
T Consensus 234 d 234 (361)
T KOG1523|consen 234 D 234 (361)
T ss_pred e
Confidence 3
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=8.1e-17 Score=149.72 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=172.5
Q ss_pred eeEeeeeeCCCCCccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEE---EEeeecccCCcceEEEEECCC
Q 017421 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKI---QKDILAKSLRWTVTDTSLSPD 180 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~ 180 (372)
...+|.+.....|.....-...|.|++|+| +..++|.|+.+|+|.+||+..+... ........|..+++.+.|..+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 567888887777777777789999999999 6678889999999999999876442 122234578889999999875
Q ss_pred CCE--EEEEeCCCeEEEEECCCCceeeecceeec-------------ccccceecc------------------------
Q 017421 181 QRH--LVYASMSPIVHIVDVGSGTMESLANVTEI-------------HDGLDFSAA------------------------ 221 (372)
Q Consensus 181 ~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~------------------------ 221 (372)
..- +++++.||.|..|+++.-........... ...+.|.+.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 544 99999999999998754332100000000 000111111
Q ss_pred ----------CCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 017421 222 ----------DDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (372)
Q Consensus 222 ----------~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~ 290 (372)
....|.++|+.+.++|=+..++..+.|.+|+||... ...++..+..+...|++++|||.....|+++..
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 112477899999999987666655569999999988 667777777788889999999777889999999
Q ss_pred CCeEEEEeccc--------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 291 DNLCKVNSVLL--------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 291 dg~i~vwd~~~--------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
||.|.+||+.. ........+.+.|+++|+.|++|. +.|++.+|++.
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~~l~ 516 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHILKLS 516 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEEEcC
Confidence 99999999962 223345567788999999999996 57888888874
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=2.8e-17 Score=140.87 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=151.0
Q ss_pred CCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 124 TSRAYVSQFSADGS-LFVAGFQASQIRIYDVERG------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
..+|+.+.|.++.. .|++|+.|..|++|.++.+ ..+.-...+..|...|+.+.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999766 9999999999999988643 2344445567888899999999999999999999999999
Q ss_pred ECCCCceeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 197 DVGSGTMESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 197 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
....-..... .......+.+ .......+|...|..++|+|++.++++++.|..+++||+..|+....+..|...|..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w-~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKW-VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccce-EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 8763111000 0000000000 0000113688899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeccccc----------------C---------C----CCCeeEEEeccCCCeEEEEe
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVLLLT----------------R---------S----INPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------------~---------~----~~~v~~~~~s~~g~~l~~~~ 325 (372)
+|. |.++++++-+.|...+.+++...+ . | ..-...++|+|||.+|++..
T Consensus 172 awD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999 889999999888877766654100 0 1 11235678999999998763
No 162
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.75 E-value=7.7e-16 Score=136.74 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=138.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
++.+++++.|+.|++||+.+++.+... ..+. .+.++.|+|+++.+ ++++.++.|++||..+++.......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~---~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF---PVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE---ECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----
Confidence 357889999999999999888655542 2222 36789999999876 5667789999999998765332210
Q ss_pred ccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN- 292 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg- 292 (372)
+ ..+..++|+|+++.++++ ..++.|++||+++.+.+..+.. ...+.+++|+ |+++++++++.++
T Consensus 72 -----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~-~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 72 -----------G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS-PDGKIVVNTSETTN 137 (300)
T ss_pred -----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC-CCCCEEEEEecCCC
Confidence 1 135678999999877554 5689999999999887777653 3456889999 9999999888765
Q ss_pred eEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 293 LCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 293 ~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
.+.+||.++.. .....+..++|+|+|++++++.. .++.+++||+.+++.+..+.
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-----IGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-----CCCEEEEEEcCcceeeeeee
Confidence 46778986432 12335578999999998865521 47889999999888766554
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=3.4e-17 Score=134.64 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=150.7
Q ss_pred ccccCCCCceEEEEECCC-CCEEEEEeCC-------CcEEEEeCCCCeEE------EEe-eecccCCcceEEEEECCCCC
Q 017421 118 WPVDQTTSRAYVSQFSAD-GSLFVAGFQA-------SQIRIYDVERGWKI------QKD-ILAKSLRWTVTDTSLSPDQR 182 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~d-------g~i~vwd~~~~~~~------~~~-~~~~~~~~~v~~~~~~~~~~ 182 (372)
..|..|.+.|+.++-+|- .+.|+++..+ ..+-||.+...... ... .....+-+.|.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 456788999999999995 4555665432 24679998754221 111 11113334799999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe
Q 017421 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANK 260 (372)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~ 260 (372)
.+++.. |..|.+|++..+..+ ...+..... .++....++-+|+| +|+.+++.+ |+++..||+++.+
T Consensus 137 klasm~-dn~i~l~~l~ess~~-vaev~ss~s---------~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~ 204 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKI-VAEVLSSES---------AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK 204 (370)
T ss_pred eeEEec-cCceEEEEcccCcch-heeeccccc---------ccccceecccccCCCCccceEEEeC-CCcEEEEEccchh
Confidence 998876 788999999887653 111111110 12455778889998 677777654 8999999999887
Q ss_pred EEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEE-EEeeeeEEE
Q 017421 261 LSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLI-IYLILVISI 331 (372)
Q Consensus 261 ~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~~~ 331 (372)
+...+. +|...|..+.|+|....+|++|+.||.|+|||.| .+.+|..+|+++.|+|....|+ +++
T Consensus 205 ~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~------ 278 (370)
T KOG1007|consen 205 KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG------ 278 (370)
T ss_pred hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC------
Confidence 766664 6888999999996667789999999999999998 3558999999999999865444 443
Q ss_pred eeceEEEeecccc
Q 017421 332 YSPNILLDNYFLL 344 (372)
Q Consensus 332 ~d~~i~lw~~~~~ 344 (372)
-|..+.||.+..-
T Consensus 279 SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 279 SDSAVNLSCASSV 291 (370)
T ss_pred CCceeEEEecccc
Confidence 4777778865543
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.1e-17 Score=146.66 Aligned_cols=219 Identities=12% Similarity=0.193 Sum_probs=159.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 194 (372)
...+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+.. ...+|...|.++.|-| +.+.+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 456889999999999999999999999999999999986655544 3458999999999999 567889999999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEE--------
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLR-------- 264 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~-------- 264 (372)
++|+...+....-.-... ....+ .-|...|..++-.|++ +.+.++++||+|+-+|++... +...
T Consensus 121 lfdl~~~~~~~~d~~~~~-~~~~~-----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEE-TTRCW-----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred EEecccccccccccCccc-hhhhh-----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 999975332111000000 00000 1366788889999988 788999999999999998632 1111
Q ss_pred -eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-cc------------------------CCC-----------C
Q 017421 265 -ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-LT------------------------RSI-----------N 307 (372)
Q Consensus 265 -~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~~------------------------~~~-----------~ 307 (372)
+...--...|+..+|.+..+|++|+.|-..++||.+. ++ +|- .
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 1112235678999988899999999999999999541 00 111 1
Q ss_pred CeeEEEeccCCCeEEEEeeeeEEEee-ceEEEeecccceEEEEE
Q 017421 308 PCNKYLFNPCNKYLIIYLILVISIYS-PNILLDNYFLLRTFYSF 350 (372)
Q Consensus 308 ~v~~~~~s~~g~~l~~~~~~~~~~~d-~~i~lw~~~~~~~~~~~ 350 (372)
.++-++|+|+|.-|++. |. -.++++|+..++....|
T Consensus 275 ~~t~vtfnpNGtElLvs-------~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVS-------WGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred eeEEEEECCCCcEEEEe-------eCCeEEEEEeecCCCCceee
Confidence 24678899999887776 34 35778888877765554
No 165
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.2e-16 Score=141.04 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=165.0
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.+..+.-|++........++...+.|++++.+|.+..+++|+.||.+..++...+....... +....++|.+++|+|
T Consensus 86 ~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNP 164 (691)
T ss_pred ecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecC
Confidence 3444567788888888888899999999999999999999999999988888887775544433 334457899999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
++..++.|+.||.|++||..++....+..... .++. .+-..-|.++.|-.++ .|++|...|+|.+||-..+
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~--d~l~------k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL--DRLS------KREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecc--cccc------cCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc
Confidence 99999999999999999999887654221110 0000 0122367778877665 6899999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc----------cCCCCCeeEEEeccC
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL----------TRSINPCNKYLFNPC 317 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~v~~~~~s~~ 317 (372)
..++.+..|...|.+++.. +++..+++++.|+.|.-|...+. ..|...|.+++..++
T Consensus 236 TLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 236 TLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred chhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 9999999999999999999 88999999999999888876532 256777888888776
No 166
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=8.3e-16 Score=135.35 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=154.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
..-|.|++|.++|+ +++|..+|.|.||+..+.+.... ...|.+.|.++....+|.++- |+.|..|..||-.-.+
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~---~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k- 319 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ---VHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK- 319 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE---eeecCCceEEEEEecCccEee-cCccceEEeccccccc-
Confidence 46799999999998 78999999999999977655444 227888999999999987555 9999999999932222
Q ss_pred eeecceeecccccceec--cC-----------------------CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 204 ESLANVTEIHDGLDFSA--AD-----------------------DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~--~~-----------------------~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
+...++++..-.+.... .. --+|......++.+|+...+++++.|+.+++|+ .
T Consensus 320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence 22222222111100000 00 026778899999999999999999999999999 4
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
.++..+.. -..++.|+.|+ |.| .++.|...|...+.|.++ ......+++.+.|+|+|.+||+++ .|
T Consensus 398 ~k~~wt~~-~~d~~~~~~fh-psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d 468 (626)
T KOG2106|consen 398 HKLEWTKI-IEDPAECADFH-PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HD 468 (626)
T ss_pred CceeEEEE-ecCceeEeecc-Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec------CC
Confidence 44444433 45688999999 888 999999999999999874 223478999999999999999997 67
Q ss_pred ceEEEeecccce
Q 017421 334 PNILLDNYFLLR 345 (372)
Q Consensus 334 ~~i~lw~~~~~~ 345 (372)
+.|+++-+....
T Consensus 469 ~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 469 NHIYIYRVSANG 480 (626)
T ss_pred CeEEEEEECCCC
Confidence 888888765543
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=133.23 Aligned_cols=212 Identities=22% Similarity=0.232 Sum_probs=155.0
Q ss_pred ccCCceeEeeeeeCCCCCccc--cCCCC---ceEEEEECCCCCEEEEEeCCCcEEEEeC-CCCeEEEEeeec----ccCC
Q 017421 100 SAADCCHMLSRYLPVNGPWPV--DQTTS---RAYVSQFSADGSLFVAGFQASQIRIYDV-ERGWKIQKDILA----KSLR 169 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~--~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~----~~~~ 169 (372)
++.+.-+.+|+.+.......+ ..|.. ...+++|+|||..|++|.. ..|+|||+ +.|+........ .+..
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 455556778888776644333 23433 3468999999999988765 79999999 445322221111 1224
Q ss_pred cceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-
Q 017421 170 WTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 247 (372)
Q Consensus 170 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~- 247 (372)
+-+.+++|+| +.+.+++++....+-||.-..+....+.- ||.+.|+.+.|.++|+.|.+|+.
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg----------------gh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG----------------GHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec----------------ccCCCeeeEEeccCcCeecccccC
Confidence 5688999999 56689999998888888877766544332 68889999999999999999876
Q ss_pred CCeEEEEECCCC-eEEEEeecCCC-CeEEE--EEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEecc
Q 017421 248 DDCIYVYDLEAN-KLSLRILAHTS-DVNTV--CFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNP 316 (372)
Q Consensus 248 dg~i~iwd~~~~-~~~~~~~~~~~-~v~~~--~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~ 316 (372)
|-.|..||++.- .++..+..|.. .-..| ... |++++|++|+.||.|++||++.+ ..+...++.++++|
T Consensus 272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD-PKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred CCeEEEEeehhccchhhhhhhhccCccceEEEecC-CCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc
Confidence 667999999854 45666666654 22233 444 88999999999999999999853 25667789999999
Q ss_pred CCCeEEEEeeeeE
Q 017421 317 CNKYLIIYLILVI 329 (372)
Q Consensus 317 ~g~~l~~~~~~~~ 329 (372)
--.+++++++..+
T Consensus 351 ~mpilatssGqr~ 363 (406)
T KOG2919|consen 351 IMPILATSSGQRI 363 (406)
T ss_pred ccceeeeccCcee
Confidence 9888888865544
No 168
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-16 Score=132.14 Aligned_cols=228 Identities=12% Similarity=0.174 Sum_probs=165.0
Q ss_pred ccCCCCc---cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc--
Q 017421 92 NYSGRGR---FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-- 166 (372)
Q Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-- 166 (372)
.|+..|. .+..+..+.+|++........+.+|..+|.+++||+||++|++++.|..|.+||+..+..+.......
T Consensus 30 ~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv 109 (405)
T KOG1273|consen 30 QFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPV 109 (405)
T ss_pred EeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcc
Confidence 4555554 36777889999999999889999999999999999999999999999999999999886544322111
Q ss_pred ------cC-----------------------------------CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421 167 ------SL-----------------------------------RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 167 ------~~-----------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
.+ .....+..|.+.|+++++|...|.+.++|..+.++..
T Consensus 110 ~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va 189 (405)
T KOG1273|consen 110 WGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA 189 (405)
T ss_pred ceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee
Confidence 00 0011122366678899999999999999999888765
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------eE--EEEeec--CCCCeEE
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-------KL--SLRILA--HTSDVNT 274 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-------~~--~~~~~~--~~~~v~~ 274 (372)
..+.... ..|..+.++..|+.|+.-+.|..|+.|+++.- +. .+.+.. ....=.+
T Consensus 190 s~rits~---------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 190 SFRITSV---------------QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred eeeechh---------------eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 5543321 27889999999999999999999999998631 11 111110 1122357
Q ss_pred EEEeCCCCCEEEEEeC-CCeEEEEeccc------ccCCC-CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 275 VCFGDESGHLIYSGSD-DNLCKVNSVLL------LTRSI-NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~-dg~i~vwd~~~------~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
++|+ .+|.+++.++. ...++||.... +.+.. .....+.|+|--..+++-. .+++++|...
T Consensus 255 ccfs-~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~-------sg~v~iw~~~ 322 (405)
T KOG1273|consen 255 CCFS-GDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA-------SGVVYIWAVV 322 (405)
T ss_pred eeec-CCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc-------CCceEEEEee
Confidence 8899 89999988773 56799998753 23333 4567888999877776653 5666677544
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.5e-16 Score=125.77 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=141.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERG-------WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
.|..-+|+|.+++|++|..+|+|.++.+..- ...........|.+++..++|. ..+|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 3555689999999999999999999998642 1111223347899999999998 44566665 599999986
Q ss_pred CCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 199 GSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 199 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
+.... .....+.+........ .-.--.|+.|...|..+-++.++.|+.++-||+++|+..+++.+|+..|.++.-
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~----~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVD----AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhccchhhhhhcCccccC----cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 54322 1111111110000000 001126899999998887888889999999999999999999999999999988
Q ss_pred eCCCCCEEEEEeCCCeEEEEeccccc---------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVLLLT---------------R-SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~~~~---------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
- .....+++|+.||++|+||.++.+ . ...+|.+++ -+..+|+++. -..+.||.+
T Consensus 165 R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-------Gp~lslwhL 234 (325)
T KOG0649|consen 165 R-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-------GPKLSLWHL 234 (325)
T ss_pred c-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-------CCceeEEec
Confidence 5 556678999999999999998543 1 123344444 4456888774 455667776
Q ss_pred ccceEE
Q 017421 342 FLLRTF 347 (372)
Q Consensus 342 ~~~~~~ 347 (372)
......
T Consensus 235 rsse~t 240 (325)
T KOG0649|consen 235 RSSEST 240 (325)
T ss_pred cCCCce
Confidence 665543
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=6.6e-17 Score=144.02 Aligned_cols=221 Identities=10% Similarity=0.115 Sum_probs=169.7
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-----CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 193 (372)
.+..|...|+.++|+|....|++++.||.|++|+++. ...+.....+.+|.++|.|+.+.+.+.++++|+.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5677899999999999999999999999999999942 23445556688999999999999999999999999999
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-------
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL------- 266 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------- 266 (372)
+.|++....- ....+.... -...-.||...|+.+++|+....|++++.||++++|+.....+ .++.
T Consensus 369 ~~w~~p~n~d-----p~ds~dp~v-l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 369 RCWNLPPNQD-----PDDSYDPSV-LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeccCCCCC-----cccccCcch-hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9997752211 000000000 0001127889999999999988999999999999998764433 0000
Q ss_pred -----------cC----------------------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 267 -----------AH----------------------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 267 -----------~~----------------------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
.| ...+..+.++ |++.+.+++..|+.|+++|..+
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-PTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-CCCCeeEecccCCceecccccc
Confidence 00 1235567777 7888999999999999999875
Q ss_pred cc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 302 LT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 302 ~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
.. .|...++++++.|+|-+|++++ .|+.+++|+......+.....|
T Consensus 521 ~~~l~s~~a~~~svtslai~~ng~~l~s~s------~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 521 GKILHSMVAHKDSVTSLAIDPNGPYLMSGS------HDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred cccchheeeccceecceeecCCCceEEeec------CCceeehhhccchheeeccccc
Confidence 43 6788899999999999999986 6999999998777766666555
No 171
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=4.7e-16 Score=144.79 Aligned_cols=216 Identities=15% Similarity=0.088 Sum_probs=143.1
Q ss_pred eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (372)
.+.+++.. ......+..|...+..++|+|||+.|+.++.+ ..|++||+.++.... .....+ ....++|+|||
T Consensus 185 ~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g---~~~~~~wSPDG 259 (429)
T PRK01742 185 EVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG---HNGAPAFSPDG 259 (429)
T ss_pred EEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC---ccCceeECCCC
Confidence 34444432 33355677788899999999999999887654 369999998774322 111223 24468999999
Q ss_pred CEEEEEe-CCCeEE--EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 017421 182 RHLVYAS-MSPIVH--IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE 257 (372)
Q Consensus 182 ~~l~~~~-~dg~i~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~ 257 (372)
+.|+++. .+|.+. +||+.++....+.. +...+....|+|||+.|+.++ .++...||++.
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTS-----------------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeecc-----------------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 9988765 577655 45666665432221 223577899999999877655 46777888764
Q ss_pred CC-eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 258 AN-KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 258 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
.. .....+ .+.. .++.|+ |+|+.|+.++.++ +.+||+.+.. .......++.|+|||++|+.++ .
T Consensus 323 ~~~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s------~ 391 (429)
T PRK01742 323 ASGGGASLV-GGRG--YSAQIS-ADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSS------T 391 (429)
T ss_pred CCCCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEE------c
Confidence 32 222223 3433 467899 9999998887765 5558986432 1112346788999999999875 4
Q ss_pred eceEEEeecc--cceEEEEEeee
Q 017421 333 SPNILLDNYF--LLRTFYSFMVH 353 (372)
Q Consensus 333 d~~i~lw~~~--~~~~~~~~~~h 353 (372)
++...+|.+. +|+..+.+.+|
T Consensus 392 ~g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 392 QGLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred CCCceEEEEEECCCCceEEccCC
Confidence 6667777653 57777777655
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=1.6e-16 Score=129.12 Aligned_cols=219 Identities=14% Similarity=0.163 Sum_probs=152.4
Q ss_pred CCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421 113 PVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (372)
Q Consensus 113 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 192 (372)
|....+.+++|.+.|+++.|..+++ |.+|...|.|++|.+.+.+...... ..+...|+.+.--|+ ..+.+-+.|+.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r--~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR--LFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh--hhccceeeceeecCC-cchhhcCCCce
Confidence 3444566789999999999998887 8899999999999999875544321 144557888888887 56788889999
Q ss_pred EEEEECCCCceeeecceeeccc---------------ccceecc----------------------CCCCccccEEEEEE
Q 017421 193 VHIVDVGSGTMESLANVTEIHD---------------GLDFSAA----------------------DDGGYSFGIFSLKF 235 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~---------------~~~~~~~----------------------~~~~h~~~i~~~~~ 235 (372)
+.+|++..+....+..+...+- ...+.+. ...+..+.+.+..+
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 9999997744332221111110 0111111 01233455666664
Q ss_pred cC-CCC--EEEEEeCCCeEEEEECCCCeEEEEe----------ecCCC--------------------------------
Q 017421 236 ST-DGR--ELVAGSSDDCIYVYDLEANKLSLRI----------LAHTS-------------------------------- 270 (372)
Q Consensus 236 sp-~~~--~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~-------------------------------- 270 (372)
.. ++. ++++|.++|.+.+||+.++..+..+ ..|..
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 33 233 4578888999999999986322211 12322
Q ss_pred --------------CeEEEEEeCCCCCEEEEEeCCCeEEEEecccc------cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421 271 --------------DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL------TRSINPCNKYLFNPCNKYLIIYLILVIS 330 (372)
Q Consensus 271 --------------~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 330 (372)
.|..+..- ||++.+|+++.|+.||||..+++ +.|...|++++|+|+-..+|+++
T Consensus 239 gslq~~~e~~lknpGv~gvrIR-pD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas----- 312 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIR-PDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS----- 312 (323)
T ss_pred CcccccceEEecCCCccceEEc-cCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc-----
Confidence 23344454 89999999999999999999864 47899999999999988888886
Q ss_pred EeeceEEEeecc
Q 017421 331 IYSPNILLDNYF 342 (372)
Q Consensus 331 ~~d~~i~lw~~~ 342 (372)
-|.+|.||+++
T Consensus 313 -kD~rISLWkLY 323 (323)
T KOG0322|consen 313 -KDARISLWKLY 323 (323)
T ss_pred -CCceEEeeecC
Confidence 68999999863
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.73 E-value=2.9e-16 Score=141.76 Aligned_cols=232 Identities=13% Similarity=0.078 Sum_probs=158.8
Q ss_pred ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeE--E---------------
Q 017421 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERGWK--I--------------- 159 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~--~--------------- 159 (372)
.++|..+++|++........ +.+|.+.|.++||.|.. ..|++|+.||.|.|||+.-... .
T Consensus 118 asGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p 197 (720)
T KOG0321|consen 118 ASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP 197 (720)
T ss_pred ccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC
Confidence 66788899999988765444 88999999999999954 6788999999999999864210 0
Q ss_pred -------EEeeecccCCcceEE---EEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccc
Q 017421 160 -------QKDILAKSLRWTVTD---TSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSF 228 (372)
Q Consensus 160 -------~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 228 (372)
........+...|.+ +.+..|...|++++. |+.|+|||++.............+ . +..+ ..-.-
T Consensus 198 tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~-~--~~t~--skrs~ 272 (720)
T KOG0321|consen 198 TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD-K--YPTH--SKRSV 272 (720)
T ss_pred CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc-C--ccCc--cccee
Confidence 000011122233444 556668889999888 999999999987653322211110 0 0000 01133
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCCC-e-EEEEEeCCCCCEEEEEeCCCeEEEEeccc---
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTSD-V-NTVCFGDESGHLIYSGSDDNLCKVNSVLL--- 301 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~-v-~~~~~sp~~~~~l~s~~~dg~i~vwd~~~--- 301 (372)
.+.++.....|.+|.+.+.|+.|+.||+.+-. ++..+.++... . ..-..+ |++.++++|+.|...++|.+..
T Consensus 273 G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS-pd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS-PDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred eeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecC-CCCceEeccCCCcceeeeeecCccC
Confidence 67778888888888887789999999998643 33334433221 1 112345 8999999999999999999874
Q ss_pred ----ccCCCCCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 302 ----LTRSINPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 302 ----~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+.+|...|+.++|.|. +..+.+ + -|.++++|++..+
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-S------dD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATTPVATC-S------DDFRVKIWRLSNG 393 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCCCceee-c------cCcceEEEeccCc
Confidence 4489999999999886 444444 3 4778888887554
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-16 Score=138.35 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=132.3
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
.+++|+++|..+++|+.||+++||+......+.. ...|...|.++.|+|||+.|++.+.| ..+||+.+++......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~---e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE---EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh---hHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 7899999999999999999999999776543333 55677789999999999999999999 8999999998543222
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCCC---CEEE--EEeCCCeEEEEECCCCeE-----EEEeecCCCCeEEEEE
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG---RELV--AGSSDDCIYVYDLEANKL-----SLRILAHTSDVNTVCF 277 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~---~~l~--s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~ 277 (372)
.... -..-...+.|+.|+ .+++ .....+.|..||+..... ..+.......|++++.
T Consensus 224 t~~~--------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 224 TPFS--------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred CCcc--------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 2111 11245556777665 3332 223345677776654321 1111123357999999
Q ss_pred eCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEE
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
+ ++|++++.|+.||.|.|++...++ .|..-|+.+.|+|+.++++..
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 9 999999999999999999987544 788899999999999988864
No 175
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.8e-15 Score=126.28 Aligned_cols=244 Identities=16% Similarity=0.120 Sum_probs=161.5
Q ss_pred ccccceeeeecccCccCCCCccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCC
Q 017421 78 LPVSTVKMLAGREGNYSGRGRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSAD-GSLFVAGFQASQIRIYDVERG 156 (372)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~ 156 (372)
..-...+.+..|+.-+ .-.+...|+.+++++-.....+..-......|.|++|-|. +.-|++|+.. -|.||.....
T Consensus 96 ws~~dlr~~aWhqH~~--~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t 172 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHII--AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT 172 (445)
T ss_pred hhhcceeeEeechhhh--hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence 3344555566665321 1134566677777666553333333345778999999995 4667888875 4999987532
Q ss_pred eEE-----------EEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCC
Q 017421 157 WKI-----------QKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (372)
Q Consensus 157 ~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
-.. .......+| .+|++++|.+||..+++++. |..|.|||..++....+...
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--------------- 236 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--------------- 236 (445)
T ss_pred cccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------
Confidence 111 111223445 47999999999999999876 67899999999987666532
Q ss_pred CccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---
Q 017421 225 GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--- 300 (372)
Q Consensus 225 ~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--- 300 (372)
..+.++-+.|||||.+|.+++-|+..++|+.. +....+-.. ..+.|...+|+ |+|++|+.... |.-++|.+.
T Consensus 237 -glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWs-pcGsfLLf~~s-gsp~lysl~f~~ 312 (445)
T KOG2139|consen 237 -GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWS-PCGSFLLFACS-GSPRLYSLTFDG 312 (445)
T ss_pred -CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeec-CCCCEEEEEEc-CCceEEEEeecC
Confidence 12378889999999999999999999999654 343333333 34589999999 88887654432 223344432
Q ss_pred -----------------------ccc----CCCCCeeEEEeccCCCeEEEEeee--eEEEeeceEEEeecccc
Q 017421 301 -----------------------LLT----RSINPCNKYLFNPCNKYLIIYLIL--VISIYSPNILLDNYFLL 344 (372)
Q Consensus 301 -----------------------~~~----~~~~~v~~~~~s~~g~~l~~~~~~--~~~~~d~~i~lw~~~~~ 344 (372)
+.. -..+++.+++|.|.|.+|++...+ .+..+..-|.+||....
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 000 124678999999999999988432 23444566667765543
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.8e-15 Score=129.94 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=90.2
Q ss_pred CccccCCceeEeeeeeCCCCCc---------cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC--------C----
Q 017421 97 GRFSAADCCHMLSRYLPVNGPW---------PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVE--------R---- 155 (372)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~--------~---- 155 (372)
....++|..+++|......... .+..|...|+++.|+|+|.+||+|+.+|.|.+|-.. +
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 3456778889999888655432 467899999999999999999999999999999866 2
Q ss_pred -CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecc
Q 017421 156 -GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLAN 208 (372)
Q Consensus 156 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 208 (372)
.+.........+|...|..++|+|++.++++++.|..+++||+..|.......
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~ 162 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD 162 (434)
T ss_pred CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc
Confidence 11122223455788899999999999999999999999999999998755443
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=5.6e-15 Score=134.28 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=171.9
Q ss_pred CccCCCC--ccccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--------E
Q 017421 91 GNYSGRG--RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI--------Q 160 (372)
Q Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--------~ 160 (372)
.+|.+++ .+..++..+.+++...+.....+.+|...|+|++|+.||+++|+|+.|..|.+|...-...+ +
T Consensus 18 ~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQ 97 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQ 97 (1081)
T ss_pred eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeee
Confidence 3444444 34667777888888888888999999999999999999999999999999999986532111 1
Q ss_pred Eeeec--------------------------ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 161 KDILA--------------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 161 ~~~~~--------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
..... ......+.+++|..||++++.|-.+|+|.+-+-.......+.+
T Consensus 98 CMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~R------ 171 (1081)
T KOG1538|consen 98 CMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIER------ 171 (1081)
T ss_pred EeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeC------
Confidence 11000 0222367888999999999999999999887543322222211
Q ss_pred ccceeccCCCCccccEEEEEEcCCC-----CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDG-----RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~-----~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 289 (372)
.+|...+|.+++|+|.. ..+++.....++..|.+. |+.+..-..-.-...|+.+. ++|.++..|+
T Consensus 172 --------pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf-~NGEy~LiGG 241 (1081)
T KOG1538|consen 172 --------PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYF-TNGEYILLGG 241 (1081)
T ss_pred --------CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheec-cCCcEEEEcc
Confidence 12566799999999963 467778888888888776 44443333333456789998 9999999999
Q ss_pred CCCeEEEEecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 290 DDNLCKVNSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 290 ~dg~i~vwd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
.|+.+++|-.+ ++.....+|+.++..|+++.++.|. .||+|-.+++...
T Consensus 242 sdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC------qDGTiACyNl~fS 295 (1081)
T KOG1538|consen 242 SDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC------QDGTIACYNLIFS 295 (1081)
T ss_pred CCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEE------ccCeeehhhhHHh
Confidence 99999999765 5556788999999999999999885 5888888876543
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=7.7e-16 Score=129.49 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=141.6
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSA--DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (372)
.+-++..+++++.-..+....+.+++..++.+.|.. ....+.+++.||+|++||++................+..+++
T Consensus 45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 344556677777777777888999999999999977 456788999999999999998765554443333335678888
Q ss_pred ECCCCCEEEEEeC----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeE
Q 017421 177 LSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCI 251 (372)
Q Consensus 177 ~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i 251 (372)
.+..++.+++|+. +-.|.+||++..+.. +..+.+ .|...|+++.|+|. .++|++|+.||-|
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~~~~e-------------SH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LRQLNE-------------SHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEeccccch-hhhhhh-------------hccCcceeEEecCCCCCeEEeecccceE
Confidence 8878888888865 668999999876641 111111 47779999999996 4789999999999
Q ss_pred EEEECCCCe----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 252 YVYDLEANK----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 252 ~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
.+||++... .+.++ .|...|.++.|..+.-+.|.+-+...+..+|+++
T Consensus 191 nlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE 242 (376)
T ss_pred EeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence 999998653 22333 4777899999983333568888889999999975
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.69 E-value=1.1e-15 Score=126.04 Aligned_cols=203 Identities=10% Similarity=0.123 Sum_probs=149.5
Q ss_pred cCCCCceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCe-EEE-----EeeecccCCcceEEEEECC-CCCEEEEEe
Q 017421 121 DQTTSRAYVSQFSADG-----SLFVAGFQASQIRIYDVERGW-KIQ-----KDILAKSLRWTVTDTSLSP-DQRHLVYAS 188 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~~-~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 188 (372)
..|.-+++.+-|.|+. ++||+.+ ..+++|.+.... .+. .......+..++++..|+. +.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 4688999999999976 3455544 479999987421 111 1112335567899999998 788999999
Q ss_pred CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee-
Q 017421 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL- 266 (372)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~- 266 (372)
-|-+..|||++++..-.+..-.- .|...|..++|...+ +.||+.+.||.|++||++..+....+.
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLI-------------AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE 237 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLI-------------AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE 237 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEE-------------ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence 99999999999873211110000 377799999999865 578999999999999999876433332
Q ss_pred --cCCCCeEEEEEeCCCCCEEEEEeCC-CeEEEEecc-------cccCCCCCeeEEEeccCCC-eEEEEeeeeEEEeece
Q 017421 267 --AHTSDVNTVCFGDESGHLIYSGSDD-NLCKVNSVL-------LLTRSINPCNKYLFNPCNK-YLIIYLILVISIYSPN 335 (372)
Q Consensus 267 --~~~~~v~~~~~sp~~~~~l~s~~~d-g~i~vwd~~-------~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~ 335 (372)
....+...++|++.|.+++|+-..| ..|.|.|+| .+++|.+.|+.++|.|... .|+++. -|.+
T Consensus 238 ~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG------DD~q 311 (364)
T KOG0290|consen 238 DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG------DDCQ 311 (364)
T ss_pred CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC------Ccce
Confidence 2245778899998888999987665 469999998 5679999999999999854 566654 3677
Q ss_pred EEEeecccc
Q 017421 336 ILLDNYFLL 344 (372)
Q Consensus 336 i~lw~~~~~ 344 (372)
..+||+...
T Consensus 312 aliWDl~q~ 320 (364)
T KOG0290|consen 312 ALIWDLQQM 320 (364)
T ss_pred EEEEecccc
Confidence 788887643
No 180
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=1.8e-15 Score=126.61 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=131.9
Q ss_pred cccCCCCceEEEEECC----C-CCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCC----CCEEEEE
Q 017421 119 PVDQTTSRAYVSQFSA----D-GSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPD----QRHLVYA 187 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~ 187 (372)
....|..+|.+++|++ + ...+++.+. ..+.+|...... ++........+......++|+-+ ..+++.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 4567889999999985 2 244566554 578889876543 33333334456677888888764 3478888
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL 266 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~ 266 (372)
+.-|.|+|.|+.++++..... +|...|+.+.|+|+. +++++++.|..|++|++++..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~----------------ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYR----------------GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred cceeEEEEEecchhhhcccee----------------ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence 999999999999887644443 688899999999975 788999999999999999999988875
Q ss_pred ---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 267 ---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 267 ---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+|...|.++.|+ .+|.+|++++.|.+|++|++.
T Consensus 176 G~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecC
Confidence 699999999999 999999999999999999997
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=5.1e-14 Score=130.17 Aligned_cols=223 Identities=23% Similarity=0.251 Sum_probs=170.1
Q ss_pred CCceeEeeeeeCCC-CCccccCCC-CceEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEeeecccCCcceEEE
Q 017421 102 ADCCHMLSRYLPVN-GPWPVDQTT-SRAYVSQF-SADGS-LFVAGFQ-ASQIRIYDVER-GWKIQKDILAKSLRWTVTDT 175 (372)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~~~~~~~-~~v~~~~~-s~~~~-~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~ 175 (372)
.+..+.+|...... ....+..+. ..+..+.+ ++++. .++..+. |+.+.+|+... ...... ...|...|..+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~ 161 (466)
T COG2319 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT---LEGHSESVTSL 161 (466)
T ss_pred CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEE---EecCcccEEEE
Confidence 46667777776665 444455533 36777777 88887 5555444 89999999987 433333 55777789999
Q ss_pred EECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC-EEEEEeCCCeEEE
Q 017421 176 SLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGSSDDCIYV 253 (372)
Q Consensus 176 ~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s~dg~i~i 253 (372)
.|+|+++.++.++. ++.+++|++..+....... +|...+.+++|+|++. .+++++.|+.|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 162 AFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA----------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred EECCCCCEEEecCCCCCceEEEEcCCCceEEeec----------------cCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 99999998888885 9999999999855433333 3667999999999998 5555588999999
Q ss_pred EECCCCeEEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEe
Q 017421 254 YDLEANKLSL-RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 254 wd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
||...+.... .+..|...+ ...|+ +++.++++++.|+.+++|+++... .|...+.++.|.|++..++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 9999887777 677887775 44788 888888999999999999997433 5678999999999888887764
Q ss_pred eeeEEEeeceEEEeecccceEEEEEe
Q 017421 326 ILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 326 ~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
.|+.+.+|+..+........
T Consensus 304 ------~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 304 ------SDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred ------CCCcEEEEEcCCCceEEEee
Confidence 45668888888777666655
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=6.7e-14 Score=119.13 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=129.5
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe--CCCeEEEEECCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--MSPIVHIVDVGS 200 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~ 200 (372)
.+..|.++.++ .++|+++-.+ .|+|||+.+.+.+........+...+.++++++.+.+++.-+ ..|.|.+||..+
T Consensus 86 fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n 162 (391)
T KOG2110|consen 86 FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN 162 (391)
T ss_pred cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence 36678888887 4556666554 599999999988887766656666688888888888888643 378999999987
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeEEEEeecC--CCCeEEEEE
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRILAH--TSDVNTVCF 277 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~ 277 (372)
-+...... .|.+.+-+++|+|+|.+||++++.|+ |+||.+.+|+.+..+... ...|++++|
T Consensus 163 l~~v~~I~----------------aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 163 LQPVNTIN----------------AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceeeeEEE----------------ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 66544443 37779999999999999999999997 899999999999888742 346889999
Q ss_pred eCCCCCEEEEEeCCCeEEEEecc
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+ +++++|++.+..++|++|.+.
T Consensus 227 s-~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 227 S-PDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred C-CCCCeEEEecCCCeEEEEEec
Confidence 9 999999999999999999986
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=5.5e-14 Score=130.73 Aligned_cols=211 Identities=15% Similarity=0.087 Sum_probs=138.9
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCC
Q 017421 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP 191 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 191 (372)
.+..+..+...+...+|+|||+.|+..+. +..|.+|++.+++... .....+ .+..+.|+|||+.|+.. +.+|
T Consensus 190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~---~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPR---HNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCC---CcCCeEECCCCCEEEEEEcCCC
Confidence 34556667778999999999999986542 3579999998774322 111222 35568999999988865 3344
Q ss_pred --eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEee
Q 017421 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRIL 266 (372)
Q Consensus 192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~ 266 (372)
.|++||+.++....+.. +...+....|+|||+.|+..+.+ + .|.++|+.+++. ..+.
T Consensus 266 ~~~I~~~d~~tg~~~~lt~-----------------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt 327 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTD-----------------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRIT 327 (429)
T ss_pred CcEEEEEECCCCCEEEccC-----------------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEee
Confidence 59999998877544332 11256788999999998877654 3 455667776654 3444
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 267 AHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
.+........|+ |+|++|+..+.+ ..|.+||+.+.. ..........|+|||++|+.++.... ...+.++
T Consensus 328 ~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~ 403 (429)
T PRK03629 328 WEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGM---GSVLNLV 403 (429)
T ss_pred cCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCC---ceEEEEE
Confidence 444556678999 999988876543 358888876322 11123456889999999987752211 1236677
Q ss_pred ecccceEEEEEeee
Q 017421 340 NYFLLRTFYSFMVH 353 (372)
Q Consensus 340 ~~~~~~~~~~~~~h 353 (372)
++ +|+..+.+.+|
T Consensus 404 ~~-~G~~~~~l~~~ 416 (429)
T PRK03629 404 ST-DGRFKARLPAT 416 (429)
T ss_pred EC-CCCCeEECccC
Confidence 76 45555555443
No 184
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=2.2e-14 Score=118.17 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=109.5
Q ss_pred EEEEECCCCCEEEEEeC----------CCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421 173 TDTSLSPDQRHLVYASM----------SPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (372)
Q Consensus 173 ~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 241 (372)
..+.|+|+|.+|++-.. -+...+|.++.... .....+ ...++|.+++|+|+|+.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------------~~~~~I~~~~WsP~g~~ 73 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------------KKEGPIHDVAWSPNGNE 73 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------------cCCCceEEEEECcCCCE
Confidence 46789999988775433 13344554432221 111111 12237999999999998
Q ss_pred EEEE--eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccccc----CCCCCeeEE
Q 017421 242 LVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLLLT----RSINPCNKY 312 (372)
Q Consensus 242 l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~~~----~~~~~v~~~ 312 (372)
|++. ..++.|.+||++ ++.+..+. ...+..+.|+ |+|++|++++. .|.|.+||++..+ .....++.+
T Consensus 74 favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~ 149 (194)
T PF08662_consen 74 FAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDV 149 (194)
T ss_pred EEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEE
Confidence 7654 456789999997 66666654 4677899999 99999999874 4679999998433 233457899
Q ss_pred EeccCCCeEEEEeee-eEEEeeceEEEeecccceEEEEE
Q 017421 313 LFNPCNKYLIIYLIL-VISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 313 ~~s~~g~~l~~~~~~-~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+|+|||+++++++.. ..++ |+.++||++. |+.+...
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~-dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRV-DNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEcCCCCEEEEEEeccceec-cccEEEEEec-CeEeEec
Confidence 999999999988532 4454 8999999984 7666543
No 185
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.4e-14 Score=130.49 Aligned_cols=209 Identities=17% Similarity=0.108 Sum_probs=140.6
Q ss_pred CCCCccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (372)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 189 (372)
...+..+..|...+...+|+|||+.|+..+. +..|.+||+.++.... ...+...+....|+|||+.|+. .+.
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL----VGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE----eecCCCcccCcEECCCCCEEEEEEec
Confidence 4445667788889999999999999987754 4689999998875422 2233446778999999998764 444
Q ss_pred CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEE
Q 017421 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLR 264 (372)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 264 (372)
++ .|++||+.++....+.. +........|+|||+.|+..+. +| .|+++|+..++. ..
T Consensus 267 ~g~~~Iy~~d~~~~~~~~Lt~-----------------~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 267 GGNTDIYTMDLRSGTTTRLTD-----------------SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCceEEEEECCCCceEEccC-----------------CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EE
Confidence 54 48888998876544322 2224567899999999887764 33 688889876654 34
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL 337 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~ 337 (372)
+..+...+....|+ |+|+.|+..+.+ ..|.+||+.... .....+..+.|+|||+.|+......-......+.
T Consensus 329 lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 329 ISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred eecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 44345566778999 999998877643 357788874211 1223467889999999988664211000013456
Q ss_pred Eeecccce
Q 017421 338 LDNYFLLR 345 (372)
Q Consensus 338 lw~~~~~~ 345 (372)
+.++..+.
T Consensus 408 ~~dl~g~~ 415 (435)
T PRK05137 408 TVDLTGRN 415 (435)
T ss_pred EEECCCCc
Confidence 66665443
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.6e-13 Score=123.91 Aligned_cols=230 Identities=13% Similarity=0.065 Sum_probs=145.0
Q ss_pred CceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 103 DCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
++.+.+|++........ ...+.+.+..++++|++++|++++ .++.|.+|++.....+.... .......+..++|+|
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-~~~~~~~p~~i~~~~ 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-ESPLPGSPTHISTDH 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee-eecCCCCceEEEECC
Confidence 45566666642221111 122346677899999999987664 47889999997321221111 111222467899999
Q ss_pred CCCEEEEEeC-CCeEEEEECCCCcee-eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEEC
Q 017421 180 DQRHLVYASM-SPIVHIVDVGSGTME-SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDL 256 (372)
Q Consensus 180 ~~~~l~~~~~-dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~ 256 (372)
+++++++++. ++.|.+|++++.... ....... +......++++|+++++++++ .++.|.+||+
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------------GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------------CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 9999888765 889999999743211 1111000 112456788999999886554 5689999999
Q ss_pred CCCeEEE-------EeecCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEeccc----cc------C------CCCCeeEE
Q 017421 257 EANKLSL-------RILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLL----LT------R------SINPCNKY 312 (372)
Q Consensus 257 ~~~~~~~-------~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~----~~------~------~~~~v~~~ 312 (372)
.+...+. ... .......++|+ |+|++++++.. ++.|.+|++.. +. . .......+
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 7633221 111 23456789999 99999988876 89999999862 11 0 11123358
Q ss_pred EeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421 313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
.|+|+|++++++. ..++.|.+|++........+.+|.
T Consensus 234 ~~~pdg~~lyv~~-----~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 234 HITPDGRHLYACD-----RTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EECCCCCEEEEec-----CCCCeEEEEEEeCCCCeEEEeEEE
Confidence 8999999999873 136778888886544333444443
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=134.30 Aligned_cols=181 Identities=20% Similarity=0.225 Sum_probs=127.5
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec--ccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeeccee
Q 017421 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILA--KSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (372)
Q Consensus 134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 210 (372)
|.+--+++|-..|.|.+.|.... .+.++... .-.+..|+++.|-| +...++++-.+|.+++||..-..........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~-~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF-EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhh-HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45556888888899999987652 21111111 11224799999999 4556777788999999986321100000000
Q ss_pred ecccccceeccCCC------------CccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 211 EIHDGLDFSAADDG------------GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 211 ~~~~~~~~~~~~~~------------~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
....+-.|.-+... --...|+..+|+|||++||+.+.||.++|||..+.+.+..++..-+...|++||
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 00000001110000 012478899999999999999999999999999988877777777899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEecc
Q 017421 279 DESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNP 316 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~ 316 (372)
|||++|++|++|.-|.||.+. ..++|.++|+.++|.|
T Consensus 342 -PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 -PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999986 4569999999999995
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=6.2e-14 Score=119.32 Aligned_cols=210 Identities=14% Similarity=0.110 Sum_probs=145.8
Q ss_pred ceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421 104 CCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (372)
++..++...+.........-...|--+-|+ ..++|..+.+ +.++++++..+..+....... +|.++.++.
T Consensus 26 ~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt----~IL~VrmNr-- 97 (391)
T KOG2110|consen 26 DGYKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT----SILAVRMNR-- 97 (391)
T ss_pred CceeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCC----ceEEEEEcc--
Confidence 445555555544422222223334444555 4556555443 459999998886666544333 699999975
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE--eCCCeEEEEECCCC
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEAN 259 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~--s~dg~i~iwd~~~~ 259 (372)
+.|++.-. ..|+|||++..+.......... +...+..+++++.+.+++.- ...|.|.+||+.+-
T Consensus 98 ~RLvV~Le-e~IyIydI~~MklLhTI~t~~~-------------n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl 163 (391)
T KOG2110|consen 98 KRLVVCLE-ESIYIYDIKDMKLLHTIETTPP-------------NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL 163 (391)
T ss_pred ceEEEEEc-ccEEEEecccceeehhhhccCC-------------CccceEeeccCCCCceEEecCCCCCceEEEEEcccc
Confidence 44555544 4599999998887555543322 22357777777777788753 33588999999999
Q ss_pred eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421 260 KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVIS 330 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~ 330 (372)
+.+..+..|.+.+.+++|+ ++|.+|||++..|+ |||+.+...+ .....|.+++|+|++++|++.+
T Consensus 164 ~~v~~I~aH~~~lAalafs-~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS----- 237 (391)
T KOG2110|consen 164 QPVNTINAHKGPLAALAFS-PDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS----- 237 (391)
T ss_pred eeeeEEEecCCceeEEEEC-CCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec-----
Confidence 9999999999999999999 99999999999998 7999886332 1245689999999999998775
Q ss_pred EeeceEEEeecc
Q 017421 331 IYSPNILLDNYF 342 (372)
Q Consensus 331 ~~d~~i~lw~~~ 342 (372)
-..+|.++.+.
T Consensus 238 -~TeTVHiFKL~ 248 (391)
T KOG2110|consen 238 -NTETVHIFKLE 248 (391)
T ss_pred -CCCeEEEEEec
Confidence 24556555543
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.3e-15 Score=132.54 Aligned_cols=179 Identities=11% Similarity=0.115 Sum_probs=136.6
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
...+..|.+.+.+-.|+|||.-|++++.||.|++|.-... ++. .......+|.|++|.|+.+.++.+. .+.+.+=
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IK 171 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIK 171 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCceEEec-CCeEEEe
Confidence 4557889999999999999999999999999999995432 221 1223344799999999887776653 3455555
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 276 (372)
-+......-. .. .|.+-|.++.|+|..+++++|++|-..++||-. |..+..-..|+-+|++++
T Consensus 172 pL~~n~k~i~---Wk-------------AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 172 PLAANSKIIR---WR-------------AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecccccceeE---Ee-------------ccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeee
Confidence 5544332111 12 366799999999999999999999999999976 667777778999999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEe
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
|+ |+ ..++.++.. ++| .-+...+.|..++||+||..+++++
T Consensus 235 ~n-pd-~~~~v~S~n-t~R-----~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 235 FN-PE-KDYLLWSYN-TAR-----FSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ec-cc-cceeeeeee-eee-----ecCCCccceEEEEEcCCCceeeccc
Confidence 99 77 667776643 344 2345667899999999999998774
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.5e-14 Score=135.41 Aligned_cols=217 Identities=13% Similarity=0.048 Sum_probs=144.7
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 199 (372)
..|.-.+++.++||+++++|+|..||.|.+|.--. .........++-|..+|.+++|+++|.+|++|+..|.+-+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45777799999999999999999999999997543 22223334456677789999999999999999999999999999
Q ss_pred CCceeeecceeecccccceeccCC------------------------------------CCccccEEEEEEcC------
Q 017421 200 SGTMESLANVTEIHDGLDFSAADD------------------------------------GGYSFGIFSLKFST------ 237 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~i~~~~~sp------ 237 (372)
+++...+.++......+.++++.+ .+...-.+.++++|
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 988655555444444444444322 00111222233333
Q ss_pred -----------------------------------------------CCCEEEEEe--------CCC--eEEEEECCCCe
Q 017421 238 -----------------------------------------------DGRELVAGS--------SDD--CIYVYDLEANK 260 (372)
Q Consensus 238 -----------------------------------------------~~~~l~s~s--------~dg--~i~iwd~~~~~ 260 (372)
.|.+++|.- .|| .+++|......
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 333443321 111 24444433222
Q ss_pred EEEE-----eecCCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEeccc----------------ccCCCCCeeEEEeccCC
Q 017421 261 LSLR-----ILAHTSDVNTVCFGDESGH-LIYSGSDDNLCKVNSVLL----------------LTRSINPCNKYLFNPCN 318 (372)
Q Consensus 261 ~~~~-----~~~~~~~v~~~~~sp~~~~-~l~s~~~dg~i~vwd~~~----------------~~~~~~~v~~~~~s~~g 318 (372)
.-.. ...|...+...++.++... .+++++.||.++||-+.. ..-|..++++++|+.||
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG 521 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG 521 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence 1111 1246666666666544444 889999999999999831 11367889999999999
Q ss_pred CeEEEEeeeeEEEeeceEEEeecccc
Q 017421 319 KYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 319 ~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
..|+++ ++..|.+||+.+.
T Consensus 522 slla~s-------~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 522 SLLAVS-------FDDTITIWDYDTK 540 (792)
T ss_pred cEEEEe-------cCCEEEEecCCCh
Confidence 999999 6888888888773
No 191
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=3.5e-15 Score=127.69 Aligned_cols=192 Identities=15% Similarity=0.131 Sum_probs=148.1
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEe--eecccCCcceEEEEECCCCCEEEEEeCCCeEE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKD--ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVH 194 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 194 (372)
.+.+|.+-|+++.|+.++++|++|+.|..+.+|+++.. ....+. .....|...|.+++|....+++++|..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 45789999999999999999999999999999998742 111111 22446668899999999999999999999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EE--EEeecCCCC
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LS--LRILAHTSD 271 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~--~~~~~~~~~ 271 (372)
.-|+++.+.+.+.... ...+.|+.+..+|..+.|++.+.++.|.+||.+..+ .. .........
T Consensus 131 ~HDiEt~qsi~V~~~~--------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 131 KHDIETKQSIYVANEN--------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred eeecccceeeeeeccc--------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999988765444321 123489999999999999999999999999998765 21 222334567
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------------CCCCCeeEEEeccCCCeEEEE
Q 017421 272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
.+.+-|+|....+|++.+..+-+-+||++... .....-.++.|+|+|..+.+-
T Consensus 197 F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 197 FYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred ceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 78899998889999999999999999997321 212233567788887665543
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=132.31 Aligned_cols=139 Identities=22% Similarity=0.322 Sum_probs=110.7
Q ss_pred CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCC--------------eEEEEe-----------eecccCCcceEEEEE
Q 017421 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERG--------------WKIQKD-----------ILAKSLRWTVTDTSL 177 (372)
Q Consensus 124 ~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~--------------~~~~~~-----------~~~~~~~~~v~~~~~ 177 (372)
+..|+|+.|-| +...++++-.+|.+.+||.+.. ...... ....-....|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 47899999999 4456777788999999976421 000000 000111236889999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 178 SPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 178 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
+|||++||+.+.||.++|+|..+.+.....+ .+-+...|++|||||++|++|++|--|.||.+.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----------------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMK----------------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHH----------------hhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 9999999999999999999999887655554 233589999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEe
Q 017421 258 ANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~s 278 (372)
.++.+..-.+|...|..|+|.
T Consensus 363 erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred cceEEEeccccccceeeEeec
Confidence 999999999999999999997
No 193
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=1.9e-15 Score=136.59 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=145.2
Q ss_pred CCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE----EeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEE
Q 017421 123 TTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIV 196 (372)
Q Consensus 123 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 196 (372)
....|+.+.|.| |...||+++.||.|++|.+..+.... ....+..|...|+++.|+| -...|++++.|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 356789999999 78889999999999999987642211 1123457778899999999 56789999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-EEEeecCC-CCeEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL-SLRILAHT-SDVNT 274 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~-~~v~~ 274 (372)
|+.+++...... ||+..|..++|+|||+.+++.+.||+|++|..++++. ++.-++.. ..--.
T Consensus 706 Dl~~~~~~~~l~----------------gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR 769 (1012)
T KOG1445|consen 706 DLANAKLYSRLV----------------GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR 769 (1012)
T ss_pred ehhhhhhhheec----------------cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee
Confidence 999887544333 7889999999999999999999999999999987753 32222111 12245
Q ss_pred EEEeCCCCCEEEEEeCC----CeEEEEecccccCCCCCeeEE---------EeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 275 VCFGDESGHLIYSGSDD----NLCKVNSVLLLTRSINPCNKY---------LFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~v~~~---------~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
+.|. -+|+++++.+.| ..|.+||..++....-.+..+ .+.+|...|+... + -|..|.++.+
T Consensus 770 i~wa-cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltG----K-GD~~v~~yEv 843 (1012)
T KOG1445|consen 770 ILWA-CDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTG----K-GDRFVNMYEV 843 (1012)
T ss_pred EEEE-ecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEec----C-CCceEEEEEe
Confidence 7788 899998887766 458899987665322222222 3445555444332 1 2666777776
Q ss_pred ccceE
Q 017421 342 FLLRT 346 (372)
Q Consensus 342 ~~~~~ 346 (372)
....+
T Consensus 844 ~~esP 848 (1012)
T KOG1445|consen 844 IYESP 848 (1012)
T ss_pred cCCCc
Confidence 55544
No 194
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.64 E-value=4.6e-15 Score=124.99 Aligned_cols=238 Identities=13% Similarity=0.185 Sum_probs=169.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEeeecc----------cCCcceEEEEECCCCC--EEEEE
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK----IQKDILAK----------SLRWTVTDTSLSPDQR--HLVYA 187 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~----------~~~~~v~~~~~~~~~~--~l~~~ 187 (372)
...|.++.|...|.+|++|..+|.|.+|.-+.... .......+ .....|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56789999999999999999999999997554321 11111000 1123688899998654 57778
Q ss_pred eCCCeEEEEECCCCceeee-ccee-e---------------ccc-ccceecc--CCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 188 SMSPIVHIVDVGSGTMESL-ANVT-E---------------IHD-GLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~-~~~~-~---------------~~~-~~~~~~~--~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
+.|.+|++|.+........ .... . .+. -+...|. -...|..-|+++.++.|+..++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 8999999999865433220 0000 0 000 0000000 0146889999999999999888765
Q ss_pred CCeEEEEECCCCeE---EEEeecC-----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----------------
Q 017421 248 DDCIYVYDLEANKL---SLRILAH-----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL----------------- 302 (372)
Q Consensus 248 dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~----------------- 302 (372)
|-.|.+|++.--.. +..++.+ ..-|++..|+|...+.|+..+..|+|++-|+|.-
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999874332 2223333 2367889999888999999999999999999811
Q ss_pred -----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec-ccceEEEEEeeeEEEeeecccCCccccc
Q 017421 303 -----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY-FLLRTFYSFMVHILFSGYLHNDHNHRCA 369 (372)
Q Consensus 303 -----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~-~~~~~~~~~~~h~~~~~~~~~~~~~~~~ 369 (372)
.+-...|..+.|+++|++|++-. =-++++||+ -..+++..+.+|......||..++++|.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I 329 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI 329 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch
Confidence 02234688999999999998762 267899999 6778999999999999999999999985
No 195
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1e-13 Score=129.34 Aligned_cols=203 Identities=16% Similarity=0.085 Sum_probs=136.9
Q ss_pred CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (372)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 189 (372)
...+..+..+...+.+.+|+|||+.|+..+.+ ..|++|++.++.... .........++.|+|||+.|+. .+.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~----l~~~~g~~~~~~~SpDG~~l~~~~s~ 268 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL----VASFRGINGAPSFSPDGRRLALTLSR 268 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE----eccCCCCccCceECCCCCEEEEEEeC
Confidence 44456677788889999999999999887643 469999998775432 1122334557899999998764 445
Q ss_pred CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEE
Q 017421 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLR 264 (372)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 264 (372)
+| .|++||+.++....+.. +......++|+|||+.|+.++. +| .|.++|+.+++.. .
T Consensus 269 ~g~~~Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~ 330 (433)
T PRK04922 269 DGNPEIYVMDLGSRQLTRLTN-----------------HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-R 330 (433)
T ss_pred CCCceEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-E
Confidence 55 59999998887543322 1123456899999998887764 34 4777787776543 3
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL 337 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~ 337 (372)
+..+......++|+ |+|+.|+..+.++ .|.+||+.... .+......+.|+|||++++..+... -...+.
T Consensus 331 lt~~g~~~~~~~~S-pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~~~L~ 406 (433)
T PRK04922 331 LTFQGNYNARASVS-PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GRGVLA 406 (433)
T ss_pred eecCCCCccCEEEC-CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---CceEEE
Confidence 33333445578999 9999988765443 58999986322 1222456789999999988764320 023566
Q ss_pred Eeecc
Q 017421 338 LDNYF 342 (372)
Q Consensus 338 lw~~~ 342 (372)
+++..
T Consensus 407 ~~~~~ 411 (433)
T PRK04922 407 AVSTD 411 (433)
T ss_pred EEECC
Confidence 66664
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=2.4e-14 Score=119.68 Aligned_cols=207 Identities=12% Similarity=0.067 Sum_probs=155.8
Q ss_pred eeEeeeeeCCC---CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421 105 CHMLSRYLPVN---GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 105 ~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (372)
.+-++...... ..+.+..|...|++++|+|..+.|++++.|..-+||....+........+..+....+++.|+|.+
T Consensus 33 evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e 112 (361)
T KOG1523|consen 33 EVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE 112 (361)
T ss_pred eEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC
Confidence 34444444333 456788999999999999999999999999999999995554444444455666689999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC-----
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL----- 256 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~----- 256 (372)
+.|++|+....|.||-++...---..+.. ...+.+.|.+++|+|++-+|++|+.|+.+++|..
T Consensus 113 nkFAVgSgar~isVcy~E~ENdWWVsKhi------------kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~V 180 (361)
T KOG1523|consen 113 NKFAVGSGARLISVCYYEQENDWWVSKHI------------KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGV 180 (361)
T ss_pred ceEEeccCccEEEEEEEecccceehhhhh------------CCccccceeeeeccCCcceecccccCcceeEEEEeeecc
Confidence 99999999999999987654422111111 1135568999999999999999999999999863
Q ss_pred CC-------------CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEecc
Q 017421 257 EA-------------NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNP 316 (372)
Q Consensus 257 ~~-------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~ 316 (372)
+. |+.+..+....+.+..+.|+ |+|..|+..+.|..+.+-|.... ....-+..++.|-.
T Consensus 181 dekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs-~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is 259 (361)
T KOG1523|consen 181 DEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS-PSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS 259 (361)
T ss_pred ccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC-CCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec
Confidence 11 22233343456789999999 99999999999999999886522 22336778888877
Q ss_pred CCCeEEEE
Q 017421 317 CNKYLIIY 324 (372)
Q Consensus 317 ~g~~l~~~ 324 (372)
+...++++
T Consensus 260 e~~vv~ag 267 (361)
T KOG1523|consen 260 ENSVVAAG 267 (361)
T ss_pred CCceeecC
Confidence 77777776
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.7e-15 Score=131.41 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=151.0
Q ss_pred ccCCceeEeeeeeC--------CCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------e-EEEEeee
Q 017421 100 SAADCCHMLSRYLP--------VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG------W-KIQKDIL 164 (372)
Q Consensus 100 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~-~~~~~~~ 164 (372)
.+-+..+.+|++.. ....+.+++|.++|.|++..+++..+.+|+.||+|+.|++... . ...-.-.
T Consensus 312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~ 391 (577)
T KOG0642|consen 312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT 391 (577)
T ss_pred eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence 44445667788822 2235678999999999999999999999999999999965421 1 1111123
Q ss_pred cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec---ccccceecc--------------------
Q 017421 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI---HDGLDFSAA-------------------- 221 (372)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~-------------------- 221 (372)
+.+|...|+.+++++....|++++.||+++.|+...... ..+..... +..+.+...
T Consensus 392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence 568888999999999999999999999999999866554 11110000 000000000
Q ss_pred ----------CCCC---ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421 222 ----------DDGG---YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (372)
Q Consensus 222 ----------~~~~---h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 288 (372)
...+ -...++.+.++|.+.+.+++..|+.|+++|..++..+.....|...++++++. |+|-+|+++
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~-~ng~~l~s~ 549 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAID-PNGPYLMSG 549 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeec-CCCceEEee
Confidence 0001 12467888999999999999999999999999999999999999999999999 999999999
Q ss_pred eCCCeEEEEecc
Q 017421 289 SDDNLCKVNSVL 300 (372)
Q Consensus 289 ~~dg~i~vwd~~ 300 (372)
+.|+.+++|.+.
T Consensus 550 s~d~sv~l~kld 561 (577)
T KOG0642|consen 550 SHDGSVRLWKLD 561 (577)
T ss_pred cCCceeehhhcc
Confidence 999999999885
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=2.4e-13 Score=122.64 Aligned_cols=201 Identities=12% Similarity=0.067 Sum_probs=133.4
Q ss_pred CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEEECCCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIVDVGSG 201 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~ 201 (372)
.+....++|+|++++|++++. ++.|.+|++++...+........+...+..+.++|+++++++++ .++.|.+||+.+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 345678999999998887764 78999999974322111111111222467789999999886655 4699999999863
Q ss_pred ceeeec--ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCC--C--eEEEEeecC------
Q 017421 202 TMESLA--NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--N--KLSLRILAH------ 268 (372)
Q Consensus 202 ~~~~~~--~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~~------ 268 (372)
...... ....... ......+.|+|+|++++++.. ++.|.+|+++. + +.+..+..+
T Consensus 159 g~l~~~~~~~~~~~~------------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 159 GHLVAQEPAEVTTVE------------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CcccccCCCceecCC------------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 321100 0000000 124567999999999988776 89999999973 3 233333321
Q ss_pred CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc------cCC---CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEE
Q 017421 269 TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL------TRS---INPCNKYLFNPCNKYLIIYLILVISIYSPNILL 338 (372)
Q Consensus 269 ~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~------~~~---~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~l 338 (372)
......+.++ |++++++++. .++.|.+|++..- ..+ ......+.|+|+|++|+++.. .+++|.+
T Consensus 227 ~~~~~~i~~~-pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-----~~~~v~v 300 (330)
T PRK11028 227 TRWAADIHIT-PDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-----KSHHISV 300 (330)
T ss_pred CccceeEEEC-CCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-----cCCcEEE
Confidence 1223468899 8999998885 4789999998421 111 124568999999999998741 3788899
Q ss_pred eecc
Q 017421 339 DNYF 342 (372)
Q Consensus 339 w~~~ 342 (372)
|++.
T Consensus 301 ~~~~ 304 (330)
T PRK11028 301 YEID 304 (330)
T ss_pred EEEc
Confidence 8764
No 199
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.2e-14 Score=119.05 Aligned_cols=193 Identities=15% Similarity=0.168 Sum_probs=137.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-CCEEEEEeCCCeEEEEECCCCc
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-QRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
...+..++|++.-..+|++..|-.|++|+-... .... .....+..|++++|-|. ++.|++|+.. -|.+|......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~--Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTK--LKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCce--ecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccc
Confidence 345788999997777889999999999997653 2222 12233447999999994 4567777665 48899875432
Q ss_pred eeee-cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421 203 MESL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (372)
Q Consensus 203 ~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 280 (372)
.... ......+..-.+ .+.|| .+|++|.|.+||..+++++. |..|.|||..++..+.......+.++-+.|| |
T Consensus 174 n~~r~~~~~s~~~~qvl---~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS-P 248 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVL---QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS-P 248 (445)
T ss_pred ccccccccccccchhhe---eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc-C
Confidence 2111 111111111111 12245 69999999999999998876 5679999999998766665566788999999 9
Q ss_pred CCCEEEEEeCCCeEEEEecc-cc-----cCCCCCeeEEEeccCCCeEEEEe
Q 017421 281 SGHLIYSGSDDNLCKVNSVL-LL-----TRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 281 ~~~~l~s~~~dg~i~vwd~~-~~-----~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
|+.+|+.+.-|+..++|... +. .-..+.|...+|+|+|++|..+.
T Consensus 249 dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 249 DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 99999999999999999543 11 12344899999999999988764
No 200
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=1e-13 Score=114.25 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=105.1
Q ss_pred EEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE--eCCCeEEE
Q 017421 128 YVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA--SMSPIVHI 195 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~v 195 (372)
..+.|+|+|++|++-.. -+...+|.++........... ...++|.+++|+|+++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 35789999998765332 234556665332222222212 223469999999999987654 35679999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCe
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDV 272 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v 272 (372)
||++. +. +..+ +...++.+.|+|+|++|++++. .|.|.+||+++.+.+.... |. .+
T Consensus 88 yd~~~-~~--i~~~----------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~ 146 (194)
T PF08662_consen 88 YDVKG-KK--IFSF----------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DA 146 (194)
T ss_pred EcCcc-cE--eEee----------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cE
Confidence 99972 22 1111 1236789999999999998864 3679999999888877765 43 47
Q ss_pred EEEEEeCCCCCEEEEEeC------CCeEEEEecc
Q 017421 273 NTVCFGDESGHLIYSGSD------DNLCKVNSVL 300 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~------dg~i~vwd~~ 300 (372)
+.++|+ |+|++|+++.. |+.++||+..
T Consensus 147 t~~~Ws-PdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 147 TDVEWS-PDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEc-CCCCEEEEEEeccceeccccEEEEEec
Confidence 899999 99999998864 6778888864
No 201
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1e-14 Score=131.05 Aligned_cols=192 Identities=19% Similarity=0.171 Sum_probs=151.8
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..|...|..+.|+-.|++|++...+ ..|.|+++....... .+....+.|.++.|+|...+|++++. ..|++||
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYd 593 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYD 593 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC---chhhcCCceeEEEecCCCceEEEEec-cceEEEe
Confidence 4577889999999999999987553 478899987653322 23344557999999999999888876 6799999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEE
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVC 276 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~ 276 (372)
+..+....... .....|..++.+|.|..|+.|+.|+.+..||+.-. ++.+++.-|...+++|+
T Consensus 594 L~kqelvKkL~----------------tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va 657 (733)
T KOG0650|consen 594 LSKQELVKKLL----------------TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA 657 (733)
T ss_pred hhHHHHHHHHh----------------cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence 98755422211 12347999999999999999999999999999854 56777888999999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEecc---------------cccCCCCC----eeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVL---------------LLTRSINP----CNKYLFNPCNKYLIIYLILVISIYSPNIL 337 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~---------------~~~~~~~~----v~~~~~s~~g~~l~~~~~~~~~~~d~~i~ 337 (372)
|+ +.-.+|++|+.||++.|+--. .+.+|... |..+.|+|..-+|+++. -|++|+
T Consensus 658 ~H-~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG------Ad~tir 730 (733)
T KOG0650|consen 658 FH-KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG------ADGTIR 730 (733)
T ss_pred hc-cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecC------CCceEE
Confidence 99 888999999999999987643 34455544 88899999999999875 477777
Q ss_pred Ee
Q 017421 338 LD 339 (372)
Q Consensus 338 lw 339 (372)
||
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 77
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=5.6e-13 Score=123.17 Aligned_cols=202 Identities=27% Similarity=0.335 Sum_probs=155.2
Q ss_pred cccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEE-CCCCC-EEEEEeC-CCeEE
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSL-SPDQR-HLVYASM-SPIVH 194 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~-dg~i~ 194 (372)
.+..|...+.++.+.+.+..++.++.|+.+.+|+...+. .......... ..+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEE
Confidence 456789999999999999999999999999999998875 3333221111 35666666 88887 4555444 89999
Q ss_pred EEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeEEEEeecCCCCe
Q 017421 195 IVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANKLSLRILAHTSDV 272 (372)
Q Consensus 195 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~v 272 (372)
+|+... ........ +|...|..++|+|++..+++++. |+.+++|++..+..+..+..|...|
T Consensus 138 ~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 138 LWDLSTPGKLIRTLE----------------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred EEEecCCCeEEEEEe----------------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 999987 33222222 46678999999999998888885 9999999999988888888899999
Q ss_pred EEEEEeCCCCC-EEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 273 NTVCFGDESGH-LIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 273 ~~~~~sp~~~~-~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
.+++|+ |++. .+++++.|+.|++||.. .+..|...+ ...|+|++.+++++. .|+.+++|+....
T Consensus 202 ~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~d~~~~~~~~~~~ 273 (466)
T COG2319 202 SSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS------SDGTIRLWDLRSS 273 (466)
T ss_pred EEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec------CCCcEEEeeecCC
Confidence 999999 8887 55555899999999876 233454543 338999997777553 5888999988766
Q ss_pred eE
Q 017421 345 RT 346 (372)
Q Consensus 345 ~~ 346 (372)
..
T Consensus 274 ~~ 275 (466)
T COG2319 274 SS 275 (466)
T ss_pred Cc
Confidence 64
No 203
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.60 E-value=1.3e-15 Score=141.48 Aligned_cols=213 Identities=15% Similarity=0.180 Sum_probs=168.6
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+.+|..+|+|+.|...|.++++|+.|..++||..++..++.. ..+|.+.|+.++.+....++++++.|..|++|.
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34689999999999999999999999999999999998877765 779999999999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe----e-cCCCCe
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI----L-AHTSDV 272 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~-~~~~~v 272 (372)
+..+..+.+.. ||++.|++++|+|-. +.+.||++++||.+ ...+... . ....-+
T Consensus 261 l~~~~pvsvLr----------------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 261 LPDGAPVSVLR----------------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred cCCCchHHHHh----------------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccce
Confidence 99998766655 788999999999953 77889999999988 2111111 1 123456
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
.++.|. .++.-++|++.|+.-..|....+..+...+.-+.++.+-..+... ...+-.+.+|++.+|..+..+++
T Consensus 320 ~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~-----ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 320 DSILFE-NNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT-----ARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred eeeecc-ccccccccccCCcccccchhhHhhhhccceEEEecccccccccee-----eeeeeEeeeeecccchhhhhhcc
Confidence 677787 889999999999999999887766666655555555443322222 22577889999999988888888
Q ss_pred eEEEeeec
Q 017421 353 HILFSGYL 360 (372)
Q Consensus 353 h~~~~~~~ 360 (372)
|....-.|
T Consensus 394 hsd~~yvL 401 (1113)
T KOG0644|consen 394 HSDEVYVL 401 (1113)
T ss_pred cccceeee
Confidence 86554444
No 204
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=3e-13 Score=125.87 Aligned_cols=189 Identities=16% Similarity=0.115 Sum_probs=124.6
Q ss_pred CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeC
Q 017421 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASM 189 (372)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~ 189 (372)
...+..+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++..... ......+....|+|||+.|+. .+.
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l----~~~~g~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV----ANFKGSNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe----ecCCCCccceEECCCCCEEEEEEcc
Confidence 33445566778889999999999999877643 3599999988754321 122234668999999998875 566
Q ss_pred CCeEEEE--ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEE--ECCCCeEEEE
Q 017421 190 SPIVHIV--DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVY--DLEANKLSLR 264 (372)
Q Consensus 190 dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iw--d~~~~~~~~~ 264 (372)
+|...+| |+.++....+.. +........|+|||+.|+..+. ++...+| ++.+++. ..
T Consensus 261 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~ 322 (427)
T PRK02889 261 DGNSQIYTVNADGSGLRRLTQ-----------------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QR 322 (427)
T ss_pred CCCceEEEEECCCCCcEECCC-----------------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EE
Confidence 7765555 455444322211 1123456789999998886654 3555555 4455543 22
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
+..+.......+|+ |+|++|+..+.++ .|.+||+.... ........+.|+|||+.|+.+.
T Consensus 323 lt~~g~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 323 VTFTGSYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred EecCCCCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence 22233344568899 9999998777554 59999986322 1122346789999999998775
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.59 E-value=1.9e-13 Score=124.54 Aligned_cols=202 Identities=15% Similarity=0.155 Sum_probs=148.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
.|+.++|-|||..|+.+.. ..+.+||...|..+.. +++|+..|.+++|+.||+.+++|+.|..|.+|..+-.....
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt---LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP---LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc---cccccceEEEEEEccCCceeccCCCceeEEEecccccceee
Confidence 7899999999998877665 4699999999977665 78999999999999999999999999999999865433211
Q ss_pred ecceeecccccceeccCC----------------------CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 017421 206 LANVTEIHDGLDFSAADD----------------------GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL 263 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~----------------------~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~ 263 (372)
.......+-+.|.|-+. ..-...+.+.+|..||++++.|-.+|+|.+-+-. ++...
T Consensus 90 -YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~ 167 (1081)
T KOG1538|consen 90 -YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKV 167 (1081)
T ss_pred -eccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcce
Confidence 11112222222333211 1234678899999999999999999999988643 44434
Q ss_pred Eee---cCCCCeEEEEEeCCCC----CEEEEEeCCCeEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEE-eeeeEE
Q 017421 264 RIL---AHTSDVNTVCFGDESG----HLIYSGSDDNLCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIY-LILVIS 330 (372)
Q Consensus 264 ~~~---~~~~~v~~~~~sp~~~----~~l~s~~~dg~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~-~~~~~~ 330 (372)
.+. +...+|.+++|+|..| ..+++.....++.+|.+.- -+...-...++.+.|+|.++..| +++.+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceE
Confidence 443 4677999999995544 4788888888888888751 12334456788999999998876 566676
Q ss_pred Eee
Q 017421 331 IYS 333 (372)
Q Consensus 331 ~~d 333 (372)
+|.
T Consensus 248 ~fT 250 (1081)
T KOG1538|consen 248 LFT 250 (1081)
T ss_pred EEe
Confidence 665
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.1e-14 Score=123.11 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=143.3
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
..+.|..+++|++........+..|...|.+++|+|||++|++.+.| ..+||+++++..+.... .......+..+.|+
T Consensus 161 tgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-~~~k~~~~~~cRF~ 238 (398)
T KOG0771|consen 161 TGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-PFSKDEMFSSCRFS 238 (398)
T ss_pred eccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-Ccccchhhhhceec
Confidence 35667789999988888888888999999999999999999999998 89999999985554432 23445567888998
Q ss_pred CCC---CEE--EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 017421 179 PDQ---RHL--VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV 253 (372)
Q Consensus 179 ~~~---~~l--~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i 253 (372)
.|+ .++ +.....+.|..|++............... .-...|++++.+++|++++.|+.||.|-|
T Consensus 239 ~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-----------~~~~siSsl~VS~dGkf~AlGT~dGsVai 307 (398)
T KOG0771|consen 239 VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-----------KRFKSISSLAVSDDGKFLALGTMDGSVAI 307 (398)
T ss_pred ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-----------hccCcceeEEEcCCCcEEEEeccCCcEEE
Confidence 877 333 33344566777776533221111111000 01137999999999999999999999999
Q ss_pred EECCCCeEEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 254 YDLEANKLSLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 254 wd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
++..+-+.++-.+ .|...|+.+.|+ |+.+++++.+.|....|..+.
T Consensus 308 ~~~~~lq~~~~vk~aH~~~VT~ltF~-Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 308 YDAKSLQRLQYVKEAHLGFVTGLTFS-PDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEeceeeeeEeehhhheeeeeeEEEc-CCcCcccccccCCceeEEEEe
Confidence 9999888766654 799999999999 999999999999888887764
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=6.8e-14 Score=124.35 Aligned_cols=171 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccc
Q 017421 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (372)
Q Consensus 137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 216 (372)
..|+.++.||.+.|.+-. + .+.. ....|.+.+.+-.|+|||.-|++++.||.|++|.-. |.......
T Consensus 76 d~~~i~s~DGkf~il~k~-~-rVE~--sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~-------- 142 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-A-RVER--SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVV-------- 142 (737)
T ss_pred ceEEEEcCCceEEEeccc-c-hhhh--hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHh--------
Confidence 468888999999888743 3 2222 245788889999999999999999999999999853 43322211
Q ss_pred ceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEE
Q 017421 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV 296 (372)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~v 296 (372)
....+|.|++|.|+.+.++.+. .+.+.|=.+.....+..+++|.+-|.++.|+ +..+++++|+.|-..++
T Consensus 143 --------Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~-~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 143 --------QNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWS-TQSNIIASGGEDFRFKI 212 (737)
T ss_pred --------hcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecC-ccccceeecCCceeEEe
Confidence 1223899999999987666554 4667777777777778889999999999999 99999999999999999
Q ss_pred Eecc-----cccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 297 NSVL-----LLTRSINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 297 wd~~-----~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
||-. +...|..+|++++|.|+ +..+.++-.+.++
T Consensus 213 WD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~ 251 (737)
T KOG1524|consen 213 WDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARF 251 (737)
T ss_pred ecccCcccccCChhccceeeeeeccc-cceeeeeeeeeee
Confidence 9975 34578899999999999 6666665555554
No 208
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.5e-13 Score=106.81 Aligned_cols=188 Identities=12% Similarity=0.080 Sum_probs=134.4
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------EEEeeecccCC-----cceEEEEECCCCCEEEEEe
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------IQKDILAKSLR-----WTVTDTSLSPDQRHLVYAS 188 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~ 188 (372)
++.|.++|+.++|. ..+|++|+ ||.|+=|....... +.... .+-+. -.|.++...|..+-++.++
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~-~P~~~~~~evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVK-IPMQVDAVEVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred ccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhc-CccccCcccCCccceeEeccCCCcEEEec
Confidence 47899999999998 55667665 49999887654311 00000 01111 1588999999888888888
Q ss_pred CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC
Q 017421 189 MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH 268 (372)
Q Consensus 189 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 268 (372)
.|+.++-||+++|+.....+ ||+..|.++.--.....+++|++||++++||+++++++..+...
T Consensus 134 GD~~~y~~dlE~G~i~r~~r----------------GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYR----------------GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCeEEEEEEecCCEEEEEEc----------------CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 99999999999999876665 89999999987444557899999999999999999988887532
Q ss_pred ----------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 269 ----------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 269 ----------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
...|-+++. +..+++.| ....+.+|.++... ....++..+.|..| ..|+.+-+..+..|
T Consensus 198 k~~~~lRp~~g~wigala~---~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAV---NEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSY 271 (325)
T ss_pred cChhhcCcccCceeEEEec---cCceEEec-CCCceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeee
Confidence 123445544 45677766 45679999998543 45567777888665 45555534444433
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.55 E-value=3e-14 Score=116.07 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=125.1
Q ss_pred CCCceEEEEECC-CCC--EEEEEeCCCcEEEEeCCCCeEEEE-------eeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421 123 TTSRAYVSQFSA-DGS--LFVAGFQASQIRIYDVERGWKIQK-------DILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (372)
Q Consensus 123 ~~~~v~~~~~s~-~~~--~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 192 (372)
..+.+.|..+.. ++. ++++|..+|.+.+||+.++..+.. ......|..+|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 356677776533 333 456788899999999998633221 2234577889999999986665677777888
Q ss_pred EEEEECCCC--ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421 193 VHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (372)
Q Consensus 193 i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 270 (372)
+..|.++.. .+.........+ -.|..+..-||++.+|+++.|+.|+||..++.+++..++.|..
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lkn--------------pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa 294 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKN--------------PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA 294 (323)
T ss_pred ceeeeeccccCcccccceEEecC--------------CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc
Confidence 888988654 221111111111 1578889999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
.|.+++|+ |+..++|.++.|+.|.+|++
T Consensus 295 gvn~vAfs-pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 GVNAVAFS-PDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceeEEEeC-CCCchhhhccCCceEEeeec
Confidence 99999999 99999999999999999986
No 210
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=126.13 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=162.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
.-..+.+.++.+|++++.|+.-|.|-.+|..++.....+.. ...|.++.|-.+.+++|++ ....++|||-..-+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEE
Confidence 44667899999999999999999999999999865554332 2368999999999888877 457899999775554
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 283 (372)
-++.. ...|..+.|-|..-+|++++..|.++--|+.+|+.+..+..-.+.+..++-+ |-..
T Consensus 204 HClk~------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~Na 264 (545)
T KOG1272|consen 204 HCLKR------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNA 264 (545)
T ss_pred eehhh------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC-Cccc
Confidence 33332 1378899999998888999999999999999999998888888889999999 7788
Q ss_pred EEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 284 LIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 284 ~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
.+-+|...|+|.+|.... +..|.++|.++++.++|++++++. -|..+++||+..-..+.++
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecccccccee
Confidence 999999999999999873 348999999999999999999875 5888888988776654443
No 211
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-12 Score=125.35 Aligned_cols=210 Identities=14% Similarity=0.076 Sum_probs=147.5
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECC
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVG 199 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~ 199 (372)
+...+...+.|+|-...++++...-.|+|||.+.++.+..+.........|+.+.+-. |..++++++.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 3445677788999899999988777899999999877666544444455788888865 56789999999999999854
Q ss_pred CCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEE
Q 017421 200 SGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVC 276 (372)
Q Consensus 200 ~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~ 276 (372)
... ...+........+..... .+.=.-++|.....+|+++++-..|+|||....+....+. +.+..|+++.
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~------r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGA------RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred ccccCCceeEEeeccccccCccC------CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 321 111111111111111111 1111456787766667666667889999999888777776 3455777776
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeccc---------ccCCCCC--eeEEEeccCCCe-EEEEeeeeEEEeeceEEEeeccc
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVLL---------LTRSINP--CNKYLFNPCNKY-LIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~--v~~~~~s~~g~~-l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
-+-..|+.|++|-.||.|++||.|. .+.|... |..+.+.+.|-- |++++ -||.|++||...
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs------~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS------QDGDIQLLDLRM 1288 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec------cCCeEEEEeccc
Confidence 6546689999999999999999983 2356666 999999887654 66654 478888888776
No 212
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=7.2e-12 Score=116.90 Aligned_cols=189 Identities=16% Similarity=0.156 Sum_probs=131.5
Q ss_pred CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eC
Q 017421 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (372)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 189 (372)
...+..+..+...+...+|+|||++|+.+..+ ..|++|++.++.... ...+...+.++.|+||++.|+.. +.
T Consensus 179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~l~~~~~~ 254 (417)
T TIGR02800 179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSKLAVSLSK 254 (417)
T ss_pred CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCEEEEEECC
Confidence 34456666777789999999999999887654 479999998874332 12233456678999999987754 33
Q ss_pred CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEE
Q 017421 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLR 264 (372)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~ 264 (372)
++ .|++||+.++....+.. +........|+|||+.|+..+.. + .|.++|+.+++. ..
T Consensus 255 ~~~~~i~~~d~~~~~~~~l~~-----------------~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~ 316 (417)
T TIGR02800 255 DGNPDIYVMDLDGKQLTRLTN-----------------GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RR 316 (417)
T ss_pred CCCccEEEEECCCCCEEECCC-----------------CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EE
Confidence 43 58899998776533322 11234457899999988766543 3 588888887664 34
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDDN---LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~dg---~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
+..+...+..+.|+ |+|++|+.++.++ .|.+||+.... ..........|+|+|++|+...
T Consensus 317 l~~~~~~~~~~~~s-pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 317 LTFRGGYNASPSWS-PDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred eecCCCCccCeEEC-CCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEE
Confidence 44455667788999 8999998887765 78888876321 1122345678999999888764
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.53 E-value=1.5e-14 Score=126.40 Aligned_cols=187 Identities=15% Similarity=0.188 Sum_probs=148.3
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 201 (372)
.-...|..+.|-.+.++||++- ...++|||-. |..+.. +..+. .|..+.|-|.--+|++++..|.++.-|+.+|
T Consensus 168 ~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHC---lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G 241 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHC---LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTG 241 (545)
T ss_pred ehhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEee---hhhcC-chhhhcccchhheeeecccCCceEEEeechh
Confidence 3456788888888888887764 4789999954 545554 33443 5899999999889999999999999999999
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES 281 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 281 (372)
+........ .+.+..|+-+|-+..+-+|...|+|.+|.....+++..+-.|.++|.++++. ++
T Consensus 242 klVa~~~t~----------------~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~-~~ 304 (545)
T KOG1272|consen 242 KLVASIRTG----------------AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVD-RG 304 (545)
T ss_pred hhhHHHHcc----------------CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEEC-CC
Confidence 976555432 2367788889988889999999999999999999988888999999999999 99
Q ss_pred CCEEEEEeCCCeEEEEecccccC-----CCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 282 GHLIYSGSDDNLCKVNSVLLLTR-----SINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 282 ~~~l~s~~~dg~i~vwd~~~~~~-----~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
|++++|.+.|..++|||++.+.. ...+...++||..| .||++.+..+.+|
T Consensus 305 G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 305 GRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG-LLALSYGDHVQIW 359 (545)
T ss_pred CcEEeecccccceeEeeeccccccceeecCCCcccccccccc-ceeeecCCeeeee
Confidence 99999999999999999995431 13567788888765 5666643333333
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=7.8e-12 Score=117.54 Aligned_cols=238 Identities=15% Similarity=0.138 Sum_probs=174.5
Q ss_pred cCCCCcc--ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEeeec--
Q 017421 93 YSGRGRF--SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG---SLFVAGFQASQIRIYDVERGWKIQKDILA-- 165 (372)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-- 165 (372)
|+.+.++ ..-...+.++..........+.+|..++..+.+.|.. .++.+++.+|.|++||...+..+......
T Consensus 24 fSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~ 103 (792)
T KOG1963|consen 24 FSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLP 103 (792)
T ss_pred cccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCc
Confidence 3444443 4445556666666777777899999999999998854 35678999999999998765333211000
Q ss_pred --------------------------------------------------------------------------------
Q 017421 166 -------------------------------------------------------------------------------- 165 (372)
Q Consensus 166 -------------------------------------------------------------------------------- 165 (372)
T Consensus 104 v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~ 183 (792)
T KOG1963|consen 104 VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKI 183 (792)
T ss_pred eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeE
Confidence
Q ss_pred ------------------ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC--CceeeecceeecccccceeccCCCC
Q 017421 166 ------------------KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS--GTMESLANVTEIHDGLDFSAADDGG 225 (372)
Q Consensus 166 ------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (372)
..|...+++.+++|.++++++|..||+|.+|.--. +... ...... -
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~-t~t~lH-------------W 249 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE-TCTLLH-------------W 249 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc-cceEEE-------------e
Confidence 03444578899999999999999999999997543 1111 111111 2
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--
Q 017421 226 YSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-- 303 (372)
Q Consensus 226 h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-- 303 (372)
|...|++++|+++|.+|++|+..|.+-+|.+.+++ .+-++.-.++|..+.++ ||+.+.++...|+.|.+.....+.
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS-~ds~~~sl~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS-PDSDLYSLVLEDNQIHLIKASDLEIK 327 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc-CCCCeEEEEecCceEEEEeccchhhh
Confidence 66799999999999999999999999999999988 34556677899999999 999999999999999998764211
Q ss_pred ---------------CCCCCeeEEEeccC-CCeEEEEeeeeEEEeeceEEEeecccceEEEEEeee
Q 017421 304 ---------------RSINPCNKYLFNPC-NKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVH 353 (372)
Q Consensus 304 ---------------~~~~~v~~~~~s~~-g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h 353 (372)
....-.+.++++|- +..+..+ -.+.++++|+.+.+.++.+.+.
T Consensus 328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~-------~~g~vQ~ydl~td~~i~~~~v~ 386 (792)
T KOG1963|consen 328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG-------HPGHVQFYDLYTDSTIYKLQVC 386 (792)
T ss_pred hhccCccCCCccccccccccceeEEEcCCCCceeecC-------CCceEEEEeccccceeeeEEEE
Confidence 12334577888884 3333334 4688889999999888777654
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.52 E-value=1.5e-11 Score=103.04 Aligned_cols=176 Identities=14% Similarity=0.130 Sum_probs=123.6
Q ss_pred eeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCE
Q 017421 105 CHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRH 183 (372)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 183 (372)
.+++|+...... ..--....+|.++.++++ .|++.- .+.|+||...+. +.+...... ..+....++.-..+...
T Consensus 76 kviIWDD~k~~~-i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~-~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 76 KVIIWDDLKERC-IIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETR-SNPKGLCSLCPTSNKSL 150 (346)
T ss_pred eEEEEecccCcE-EEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecc-cCCCceEeecCCCCceE
Confidence 466777443332 222345788999999854 466554 478999999854 333332222 22222333333324444
Q ss_pred EEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeE
Q 017421 184 LVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKL 261 (372)
Q Consensus 184 l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~ 261 (372)
|+. |-.-|.|.|-|+...+......+ . .|.+.|.|++.+-+|..+||+|..|+ |+|||..+|+.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I-~-------------AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSII-N-------------AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEE-E-------------cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 544 44579999999987654211111 1 47889999999999999999999998 89999999999
Q ss_pred EEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 262 SLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 262 ~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+..+.. ....|++++|| |+..+|+++|..|+|+|+.++
T Consensus 217 l~E~RRG~d~A~iy~iaFS-p~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 217 LQELRRGVDRADIYCIAFS-PNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eeeeecCCchheEEEEEeC-CCccEEEEEcCCCeEEEEEee
Confidence 988873 33589999999 999999999999999999987
No 216
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-11 Score=114.58 Aligned_cols=208 Identities=13% Similarity=0.040 Sum_probs=129.3
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCC
Q 017421 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSP 191 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 191 (372)
....+..+...+....|+|||+.|+..+.+ ..|++||+.+++... .... ........|+|||+.|+.. ..+|
T Consensus 209 ~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~---~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 209 NEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSF---PGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred CceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCC---CCCcCCeeECCCCCEEEEEEeCCC
Confidence 345566677788999999999999876543 258899998774322 1112 2234578999999988754 5556
Q ss_pred e--EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CC--eEEEEECCCCeEEEEee
Q 017421 192 I--VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DD--CIYVYDLEANKLSLRIL 266 (372)
Q Consensus 192 ~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~ 266 (372)
. |+++|+.+++...+.. +.......+|+|||+.|+..+. ++ .|.++|+.+++... +.
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~-----------------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt 346 (448)
T PRK04792 285 QPEIYVVDIATKALTRITR-----------------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT 346 (448)
T ss_pred CeEEEEEECCCCCeEECcc-----------------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee
Confidence 4 8888988776543322 1124567899999998876654 33 57777888776433 32
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 267 AHTSDVNTVCFGDESGHLIYSGSD-DNL--CKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
.........+|+ |+|++|+..+. ++. |.++|+.... ..........|+|||+.|+......- ...+.++
T Consensus 347 ~~g~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g---~~~l~~~ 422 (448)
T PRK04792 347 FEGEQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQG---KQVLAAV 422 (448)
T ss_pred cCCCCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCC---ceEEEEE
Confidence 222333457899 89988877654 443 4455654321 11112345689999999886642110 1235666
Q ss_pred ecccceEEEEE
Q 017421 340 NYFLLRTFYSF 350 (372)
Q Consensus 340 ~~~~~~~~~~~ 350 (372)
+. +|+..+.+
T Consensus 423 ~~-~G~~~~~l 432 (448)
T PRK04792 423 SI-DGRFKARL 432 (448)
T ss_pred EC-CCCceEEC
Confidence 65 45544444
No 217
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.8e-11 Score=114.48 Aligned_cols=189 Identities=14% Similarity=0.104 Sum_probs=126.0
Q ss_pred CCCCccccCCCCceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eC
Q 017421 114 VNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SM 189 (372)
Q Consensus 114 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 189 (372)
...+..+..+...+....|+|||+.|+..+.+ ..|.+|++.++.... .....+.+....|+|||+.|+.. ..
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~la~~~~~ 263 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSKLAFVLSK 263 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCEEEEEEcc
Confidence 33455666778889999999999999876543 368999998874422 11222345578999999988754 44
Q ss_pred CC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCCCeEEEE
Q 017421 190 SP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEANKLSLR 264 (372)
Q Consensus 190 dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d--g~i~iwd~~~~~~~~~ 264 (372)
+| .|++||+.++....+.. +........|+|||+.|+..+. + ..|.++|+.+++...
T Consensus 264 ~g~~~Iy~~d~~~~~~~~lt~-----------------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~- 325 (430)
T PRK00178 264 DGNPEIYVMDLASRQLSRVTN-----------------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER- 325 (430)
T ss_pred CCCceEEEEECCCCCeEEccc-----------------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence 44 68889998876543322 1123456789999998876654 3 358888888776433
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCC-C--eEEEEeccccc----CCCCCeeEEEeccCCCeEEEEe
Q 017421 265 ILAHTSDVNTVCFGDESGHLIYSGSDD-N--LCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 265 ~~~~~~~v~~~~~sp~~~~~l~s~~~d-g--~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
+...........|+ |+|+.|+..+.+ + .|.+||+.+.. ..........|+|||+.++.+.
T Consensus 326 lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 326 VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYAT 392 (430)
T ss_pred eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEE
Confidence 22222334467899 899988877643 3 47788876322 1122334678999999998764
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=115.45 Aligned_cols=227 Identities=15% Similarity=0.189 Sum_probs=153.3
Q ss_pred CccCCCCccccCCce--eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeeccc
Q 017421 91 GNYSGRGRFSAADCC--HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKS 167 (372)
Q Consensus 91 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~ 167 (372)
..|++.+.+.+.-.. +.+.+....+ ...+-..-..|.-+.|..|.-+++++ ..++.|.+|++...+--.+ ...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck---Ide 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQ-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK---IDE 89 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhh-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE---ecc
Confidence 356777777443322 2232222222 22222235677788999988777654 6788999999987754444 345
Q ss_pred CCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 168 LRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 168 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
.+.++.++.|+|||+.|+.. ..+-.|.||.+.+.+...+.... ..+..++|+|||++.+..+
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK-----------------~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK-----------------TNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc-----------------cCceeEEECCCCceeeeee
Confidence 55679999999999877655 45889999999987754333211 2567899999999988776
Q ss_pred CCCe---EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCeEEEEecccccCCCCCeeEEEeccCCCeE
Q 017421 247 SDDC---IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD--DNLCKVNSVLLLTRSINPCNKYLFNPCNKYL 321 (372)
Q Consensus 247 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l 321 (372)
.... +.|...+....+..+...+-..+.+.|+ |||+.|++-.. +-.|..|. -.-.+..+.|+|.+++|
T Consensus 153 RrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-Pdg~~laVwd~~Leykv~aYe------~~lG~k~v~wsP~~qfl 225 (447)
T KOG4497|consen 153 RRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-PDGNWLAVWDNVLEYKVYAYE------RGLGLKFVEWSPCNQFL 225 (447)
T ss_pred cccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-CCCcEEEEecchhhheeeeee------eccceeEEEeccccceE
Confidence 5322 3333333444555566566678899999 99998876432 22333332 23578889999999999
Q ss_pred EEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 322 IIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 322 ~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
++|+ ||+.+++-+-.+.+++..|.
T Consensus 226 avGs------yD~~lrvlnh~tWk~f~efl 249 (447)
T KOG4497|consen 226 AVGS------YDQMLRVLNHFTWKPFGEFL 249 (447)
T ss_pred Eeec------cchhhhhhceeeeeehhhhc
Confidence 9998 89999998888888776553
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2.6e-12 Score=110.32 Aligned_cols=208 Identities=11% Similarity=0.066 Sum_probs=149.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-eeecccCCcceEEEEECCCCC-EEEEEeCC--CeEEEEEC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQK-DILAKSLRWTVTDTSLSPDQR-HLVYASMS--PIVHIVDV 198 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~vwd~ 198 (372)
...+|-.++.. || .|++|-.+|.+.+|....+..-.. ......+ ..+..+.-++... .+++|+.. ..+++||+
T Consensus 104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl 180 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDL 180 (412)
T ss_pred ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeec
Confidence 34556665554 33 577778889999999884421111 1111122 2466777777444 45568888 78999999
Q ss_pred CCCceeeecceee-cccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEE
Q 017421 199 GSGTMESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNT 274 (372)
Q Consensus 199 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 274 (372)
+..+.+....... ..-++. -.-.++.+.|-|. ...|++++.-+.+++||.+.+ +++..+.-.+.++++
T Consensus 181 e~~~qiw~aKNvpnD~L~Lr--------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~ 252 (412)
T KOG3881|consen 181 EQSKQIWSAKNVPNDRLGLR--------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISS 252 (412)
T ss_pred ccceeeeeccCCCCccccce--------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCccee
Confidence 9875432222111 111111 1126778899887 789999999999999999865 477778778889999
Q ss_pred EEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 275 VCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
+... |+++++++|..-|.+..||++. +++..+.|+++..+|.++++++++ -|..++++|+.+.+.+
T Consensus 253 ~~l~-p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 253 TGLT-PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLL 325 (412)
T ss_pred eeec-CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhh
Confidence 9999 9999999999999999999983 456788999999999999999884 4888888888886654
Q ss_pred E
Q 017421 348 Y 348 (372)
Q Consensus 348 ~ 348 (372)
.
T Consensus 326 ~ 326 (412)
T KOG3881|consen 326 H 326 (412)
T ss_pred h
Confidence 4
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3.5e-12 Score=121.91 Aligned_cols=220 Identities=20% Similarity=0.190 Sum_probs=150.3
Q ss_pred ccCCceeEeeeeeCCC--CCccc------cCC----CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeeccc
Q 017421 100 SAADCCHMLSRYLPVN--GPWPV------DQT----TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKS 167 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~--~~~~~------~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 167 (372)
.+.|..+++|+..... .+... .++ .+.-.-++|.....+|++++.-..|+|||......+.... .+
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP--~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP--YG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc--cC
Confidence 4556678888887763 22211 111 1122445787766666666667899999998775554422 23
Q ss_pred CCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcccc--EEEEEEcCCCC-EEE
Q 017421 168 LRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG--IFSLKFSTDGR-ELV 243 (372)
Q Consensus 168 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~~~~sp~~~-~l~ 243 (372)
...-|++++-+. .|+.++.|..||.|++||.+............. |+.. |..+.+.+.|- .|+
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-------------h~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-------------HNDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc-------------cCCcccceeEEeecCCCccee
Confidence 344567665544 469999999999999999987655433333332 4444 99999998764 599
Q ss_pred EEeCCCeEEEEECCCCe--EEEEeecCC---CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----c-------ccCCC
Q 017421 244 AGSSDDCIYVYDLEANK--LSLRILAHT---SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----L-------LTRSI 306 (372)
Q Consensus 244 s~s~dg~i~iwd~~~~~--~~~~~~~~~---~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~-------~~~~~ 306 (372)
+|+.+|.|++||++... ...++..|- +.++++..+ ++...+|+|+. +.|+||++. . +....
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH-EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRI 1351 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeec-cCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcC
Confidence 99999999999999742 222333332 359999999 99999999988 999999985 1 11344
Q ss_pred CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
..+.+++|+|.--.+++|. -|..|.++...
T Consensus 1352 gs~scL~FHP~~~llAaG~------~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGS------ADSTVSIYSCE 1381 (1387)
T ss_pred CCcceeeecchhHhhhhcc------CCceEEEeecC
Confidence 5679999999988888874 34555555443
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=5.8e-12 Score=122.18 Aligned_cols=220 Identities=9% Similarity=0.042 Sum_probs=148.0
Q ss_pred cccCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421 119 PVDQTTSRAYVSQFSADG-SLFVAGFQASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 193 (372)
.+..|...|..++.++.. .+|++|+.||+|++|++..- ...+..........++..+.+.+.+..+|+++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 456788889899887754 99999999999999998642 1122222233345579999999999999999999999
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCC-EEEEEeCCCeEEEEECCCCeEEEEee--cCC
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGR-ELVAGSSDDCIYVYDLEANKLSLRIL--AHT 269 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~ 269 (372)
.+.+++............-... +.+...-+..-+|.. ++. .++.++..+.|..||++......+++ ...
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n-------~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPN-------LKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EEEEccccccccceeeeeeccc-------ccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999876321111000000000 001111233333332 233 67888888999999999876554443 334
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCC---eEEEEeeeeEEEeeceEEEe
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNK---YLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~---~l~~~~~~~~~~~d~~i~lw 339 (372)
+.|++++.+ |.++++++|+..|.+.+||+|... ++..++..+..+|-.. ..++++.. -.+.+.+|
T Consensus 1196 G~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~nevs~w 1270 (1431)
T KOG1240|consen 1196 GLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNEVSTW 1270 (1431)
T ss_pred cceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCceeee
Confidence 789999999 999999999999999999998321 4557777777776533 44444211 35778899
Q ss_pred ecccceEEEEE
Q 017421 340 NYFLLRTFYSF 350 (372)
Q Consensus 340 ~~~~~~~~~~~ 350 (372)
+..+|..-+.|
T Consensus 1271 n~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1271 NMETGLRQTVL 1281 (1431)
T ss_pred ecccCcceEEE
Confidence 98888655544
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-12 Score=121.32 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=116.3
Q ss_pred CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceecc
Q 017421 145 ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAA 221 (372)
Q Consensus 145 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 221 (372)
+..|.+||..... ... ...+...+.+..|+|||+.|+.++.+ ..|++||+.++....+....
T Consensus 183 ~~~i~i~d~dg~~-~~~---lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~----------- 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QFI---VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR----------- 247 (429)
T ss_pred eEEEEEECCCCCC-ceE---eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-----------
Confidence 4689999987653 222 33455679999999999999987653 46999999887643332211
Q ss_pred CCCCccccEEEEEEcCCCCEEEEEe-CCCeEE--EEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEE
Q 017421 222 DDGGYSFGIFSLKFSTDGRELVAGS-SDDCIY--VYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS-DDNLCKVN 297 (372)
Q Consensus 222 ~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~--iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vw 297 (372)
+ ....++|+|||+.|+.+. .+|.+. +||+.+++. ..+..+...+..+.|+ |||+.|+.++ .++...||
T Consensus 248 ---g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~ 319 (429)
T PRK01742 248 ---G---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVY 319 (429)
T ss_pred ---C---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEE
Confidence 1 233689999999888764 577654 556666654 4556677778899999 8998776554 57888898
Q ss_pred eccccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421 298 SVLLLT------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT 346 (372)
Q Consensus 298 d~~~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~ 346 (372)
++.... .+.. ..+.|+|||+.|+.... ..+.+||+.+++.
T Consensus 320 ~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~ 365 (429)
T PRK01742 320 RMSASGGGASLVGGRG--YSAQISADGKTLVMING-------DNVVKQDLTSGST 365 (429)
T ss_pred EEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-------CCEEEEECCCCCe
Confidence 875211 1221 46789999999987743 2345566666543
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.5e-12 Score=114.53 Aligned_cols=205 Identities=12% Similarity=0.091 Sum_probs=142.6
Q ss_pred CCCCceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEE---------eeecc-----------------------cC
Q 017421 122 QTTSRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQK---------DILAK-----------------------SL 168 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~---------~~~~~-----------------------~~ 168 (372)
.|+..-+.|..+|||+++ |+|.+--.|++||+.+-..... +..+. .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 467888899999999986 6778888999999876421110 00000 00
Q ss_pred ----CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 169 ----RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 169 ----~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
+..-..++++.-..-|++++....|+-++++.|........ ....++++..++...+|++
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~----------------~~~~lN~v~in~~hgLla~ 192 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET----------------DSGELNVVSINEEHGLLAC 192 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc----------------ccccceeeeecCccceEEe
Confidence 00112333333223355555556788888888876444332 2248999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEee------cCCC-----CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-------CCC
Q 017421 245 GSSDDCIYVYDLEANKLSLRIL------AHTS-----DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-------RSI 306 (372)
Q Consensus 245 ~s~dg~i~iwd~~~~~~~~~~~------~~~~-----~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~~ 306 (372)
|+.+|.|..||.++...+.++. .|.+ .|+++.|+ .+|-.+++|..+|.+.|||+++-. ...
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-CCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 9999999999999877655554 2333 49999999 889999999999999999999432 445
Q ss_pred CCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 307 NPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 307 ~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
.+|..+.|.+. +..+++. -...++|||-.+|+.+.+.
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~-------Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSM-------DKRILKIWDECTGKPMASI 310 (703)
T ss_pred cceeeecccccCCCceEEec-------chHHhhhcccccCCceeec
Confidence 68899999776 3445554 2356788998888876543
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=8.4e-11 Score=106.54 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=137.0
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe-CCCeEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS-MSPIVHIV 196 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw 196 (372)
..+......-..+.|+|||+++.+++.||.|.++|+.+.+.+.+..... ...++++++||++++++. ..+.+.++
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~----~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG----NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS----EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC----CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 3444333334557899999999999999999999999998766643322 478899999999998776 48999999
Q ss_pred ECCCCceeeecceeec---------------ccc--cceeccCC----------C--------CccccEEEEEEcCCCCE
Q 017421 197 DVGSGTMESLANVTEI---------------HDG--LDFSAADD----------G--------GYSFGIFSLKFSTDGRE 241 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~---------------~~~--~~~~~~~~----------~--------~h~~~i~~~~~sp~~~~ 241 (372)
|.++.+.......... +.. ..+...+. . .-........|+|++++
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 9988776544322111 000 00110000 0 01123456789999998
Q ss_pred EEEE-eCCCeEEEEECCCCeEEEEee------------------------------------------------------
Q 017421 242 LVAG-SSDDCIYVYDLEANKLSLRIL------------------------------------------------------ 266 (372)
Q Consensus 242 l~s~-s~dg~i~iwd~~~~~~~~~~~------------------------------------------------------ 266 (372)
++++ .....|-++|.++++.+..+.
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I 265 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI 265 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE
Confidence 8665 445678888887765543321
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEE----eCCCeEEEEecccccC-------CCCCeeEEEeccCCCeEEEEeeeeEEEeec
Q 017421 267 -AHTSDVNTVCFGDESGHLIYSG----SDDNLCKVNSVLLLTR-------SINPCNKYLFNPCNKYLIIYLILVISIYSP 334 (372)
Q Consensus 267 -~~~~~v~~~~~sp~~~~~l~s~----~~dg~i~vwd~~~~~~-------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~ 334 (372)
....+ ..+..+ |+++++.+. ...+.|.++|.++++. ....+..+.|+++|+.+..+. |+.
T Consensus 266 ~~~G~g-lFi~th-P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~------~~~ 337 (369)
T PF02239_consen 266 PTQGGG-LFIKTH-PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSV------WDG 337 (369)
T ss_dssp E-SSSS---EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEE------E--
T ss_pred ECCCCc-ceeecC-CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEE------ecC
Confidence 00111 345667 888888887 3458899999987641 223488999999999988775 664
Q ss_pred --eEEEeecccceEEEEEe
Q 017421 335 --NILLDNYFLLRTFYSFM 351 (372)
Q Consensus 335 --~i~lw~~~~~~~~~~~~ 351 (372)
.|.++|..+.+++....
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 59999999999998877
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.46 E-value=1.5e-13 Score=128.07 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=153.5
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
.+.++.+++|............||.+.|+.++.+.+..++++++.|..|++|.+..+..+.. +.+|.+.|++++|+|
T Consensus 208 gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv---LrghtgavtaiafsP 284 (1113)
T KOG0644|consen 208 GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV---LRGHTGAVTAIAFSP 284 (1113)
T ss_pred cCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH---HhccccceeeeccCc
Confidence 44445667888766777778899999999999999999999999999999999998866554 779999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeccee------------ecccccceeccCC----CCc--------cccEEEEEE
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVT------------EIHDGLDFSAADD----GGY--------SFGIFSLKF 235 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~----~~h--------~~~i~~~~~ 235 (372)
-. +.+.||++++||.+-.......... ....+..|..... ..| ...+.-+.+
T Consensus 285 ~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ 360 (1113)
T KOG0644|consen 285 RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTR 360 (1113)
T ss_pred cc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEec
Confidence 54 6788999999998721111110000 0001111111111 111 111222222
Q ss_pred cCCC-CEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCC
Q 017421 236 STDG-RELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINP 308 (372)
Q Consensus 236 sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~ 308 (372)
+.+- .+.+++-.+..+++|++-+++..+.+.+|...++.+.++|-+.....+++.||+..|||+-... .....
T Consensus 361 ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k 440 (1113)
T KOG0644|consen 361 SSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK 440 (1113)
T ss_pred cccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce
Confidence 2221 2344455567789999999999999999999999999997788888899999999999985221 12345
Q ss_pred eeEEEeccCCCeEEEE
Q 017421 309 CNKYLFNPCNKYLIIY 324 (372)
Q Consensus 309 v~~~~~s~~g~~l~~~ 324 (372)
+...+||++|+.++..
T Consensus 441 l~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 441 LVDGKFSQDGTSIALS 456 (1113)
T ss_pred eeccccCCCCceEecC
Confidence 6667899998887765
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.7e-13 Score=120.95 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=118.3
Q ss_pred cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEE
Q 017421 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GREL 242 (372)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l 242 (372)
+.+|.+-|.++.|+.+|.+|++|+.|-.+.|||.-.-+....+. .||...|.++.|-|. .+.+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------TGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------cccccceeEEeeeccCCCeEE
Confidence 66999999999999999999999999999999987655433332 268899999999994 5788
Q ss_pred EEEeCCCeEEEEECCCC----------eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--C------
Q 017421 243 VAGSSDDCIYVYDLEAN----------KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--R------ 304 (372)
Q Consensus 243 ~s~s~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--~------ 304 (372)
++|..|..|++||+... +....+..|...|..++..|...+.+.+++.||+|+-+|++... .
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 99999999999999852 23344556888899999984444899999999999999998421 1
Q ss_pred --------CCCCeeEEEeccCCC-eEEEE-eeeeEEEee
Q 017421 305 --------SINPCNKYLFNPCNK-YLIIY-LILVISIYS 333 (372)
Q Consensus 305 --------~~~~v~~~~~s~~g~-~l~~~-~~~~~~~~d 333 (372)
.--...++..+|... +|++| ++-+.++||
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 112357788999754 56665 444455555
No 227
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.5e-11 Score=105.71 Aligned_cols=232 Identities=16% Similarity=0.160 Sum_probs=148.9
Q ss_pred cCCCCcc---ccCCceeEeeeeeC-----CCCCccccC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 017421 93 YSGRGRF---SAADCCHMLSRYLP-----VNGPWPVDQ--TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD 162 (372)
Q Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 162 (372)
|+..++| .+.+...++|.... ...|..+.+ |...|.|++|.-..+++.+|..+++|...|+++.+.+...
T Consensus 64 FS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~ 143 (609)
T KOG4227|consen 64 FSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVA 143 (609)
T ss_pred eccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeee
Confidence 4666665 33445677887653 234555544 5689999999999999999999999999999998766543
Q ss_pred eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCC-C
Q 017421 163 ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-R 240 (372)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~ 240 (372)
. .....+.|..+..+|..+.|++.+.++.|.+||++.... ..... ... .......+.|+|.. .
T Consensus 144 ~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN-------------~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 144 N-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PAN-------------SGKNFYTAEFHPETPA 208 (609)
T ss_pred c-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecC-------------CCccceeeeecCCCce
Confidence 2 223345799999999999999999999999999986541 11111 000 11233444555533 3
Q ss_pred EEEEEeCCCeEEEEECC-------------------------------------------------CCeEEEEeecCC--
Q 017421 241 ELVAGSSDDCIYVYDLE-------------------------------------------------ANKLSLRILAHT-- 269 (372)
Q Consensus 241 ~l~s~s~dg~i~iwd~~-------------------------------------------------~~~~~~~~~~~~-- 269 (372)
+|++.+..+.+-+||++ +..+......|.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~ 288 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPN 288 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCC
Confidence 34444444445555543 322211111222
Q ss_pred -----CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----------------------------cccCCCCCeeEEEec
Q 017421 270 -----SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----------------------------LLTRSINPCNKYLFN 315 (372)
Q Consensus 270 -----~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----------------------------~~~~~~~~v~~~~~s 315 (372)
..+.+++|. +..-+++|+.+-.|++|.+. .+++|...+..+.|+
T Consensus 289 GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 289 GYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred cceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 245567775 44458999999999999985 234788889999999
Q ss_pred cCCCeEEEEe-eeeEEEeeceEEEeec
Q 017421 316 PCNKYLIIYL-ILVISIYSPNILLDNY 341 (372)
Q Consensus 316 ~~g~~l~~~~-~~~~~~~d~~i~lw~~ 341 (372)
|...+|+++. ...+++|..--.-|++
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~~r~P~~~ 393 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSDHRLPWSY 393 (609)
T ss_pred CCcceEeccchhhheeccccccCCccc
Confidence 9987777653 3444454443333444
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.4e-11 Score=111.02 Aligned_cols=213 Identities=15% Similarity=0.080 Sum_probs=129.6
Q ss_pred CCCccccCCCCceEEEEECCCCCEEE---EEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421 115 NGPWPVDQTTSRAYVSQFSADGSLFV---AGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (372)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 189 (372)
..+..+......+..-+|+|||+.++ +...+ ..|.+.++.+++... .. ..........|+|||+.|+..+.
T Consensus 175 ~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt---~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 175 QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-IL---ALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-ee---cCCCCccceEECCCCCEEEEEEC
Confidence 33455655666777889999997532 33333 368888888774322 11 22224556899999999887653
Q ss_pred -CC--e--EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCe--EEEEECCC-Ce
Q 017421 190 -SP--I--VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDC--IYVYDLEA-NK 260 (372)
Q Consensus 190 -dg--~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~--i~iwd~~~-~~ 260 (372)
+| . +..|++..+.......+.. +........+|+|||+.|+..+ .+|. |.++++.. +.
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~-------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLN-------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeec-------------CCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 23 2 3446666532100111111 0111345679999999887665 3564 44555542 23
Q ss_pred EEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
....+..+...+....|+ |||+.|+..+.+ ..|.+||+.... .....+..+.|+|||+.|+...... -
T Consensus 318 ~~~~lt~~~~~~~~p~wS-PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~---g 393 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWS-PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS---N 393 (428)
T ss_pred ceEEeccCCCCccceeEC-CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC---C
Confidence 344455455667789999 999988876543 468999986332 2234567899999999887653211 1
Q ss_pred eceEEEeecccceEEE
Q 017421 333 SPNILLDNYFLLRTFY 348 (372)
Q Consensus 333 d~~i~lw~~~~~~~~~ 348 (372)
...|.+|++..++...
T Consensus 394 ~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 394 ESELYLISLITKKTRK 409 (428)
T ss_pred CceEEEEECCCCCEEE
Confidence 3568888888776543
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.5e-11 Score=112.99 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=117.1
Q ss_pred cccCCCCceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-C--e
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVAG-FQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P--I 192 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~ 192 (372)
.+....+.+..++|+|||+.|+.. +.+| .|++||+.++.... ...+...+....|+|||+.|+..+.+ + .
T Consensus 237 ~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 237 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCEEEEEeCCCCCce
Confidence 333444556678999999988765 4444 58899998774332 22333457889999999999877764 3 4
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHT 269 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~ 269 (372)
|+++|+.++....+.. +........|+|||++|+..+.+ ..|.+||+.+++.. .+...
T Consensus 313 Iy~~d~~~g~~~~lt~-----------------~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~- 373 (429)
T PRK03629 313 VYKVNINGGAPQRITW-----------------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT- 373 (429)
T ss_pred EEEEECCCCCeEEeec-----------------CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-
Confidence 5566777665433211 11134568899999999876543 35889999888643 33322
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCe---EEEEecc-----cccCCCCCeeEEEecc
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNL---CKVNSVL-----LLTRSINPCNKYLFNP 316 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~---i~vwd~~-----~~~~~~~~v~~~~~s~ 316 (372)
.......|+ |||+.|+.++.++. +.++++. .+..+...+..++|+|
T Consensus 374 ~~~~~p~~S-pDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 374 FLDETPSIA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCceEC-CCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 234567899 99999998887764 6677764 3445667788888887
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.43 E-value=5.8e-11 Score=99.62 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=138.6
Q ss_pred ccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEE-EEeCC------CcEEEEeCCCCeEEEEeeecccCCcce
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQA------SQIRIYDVERGWKIQKDILAKSLRWTV 172 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v 172 (372)
.+.+.+.++++..|.......+.+.+.+.-+..--..++|+ +|+.+ ..|.|||-....++..+.. ..+|
T Consensus 22 va~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f----~~~I 97 (346)
T KOG2111|consen 22 VATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF----NSEI 97 (346)
T ss_pred EEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe----ccce
Confidence 44566778888877554333333333322222222244554 34333 3699999665555554333 3379
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEECCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCe
Q 017421 173 TDTSLSPDQRHLVYASMSPIVHIVDVGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDC 250 (372)
Q Consensus 173 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~ 250 (372)
.++.+.++ +|++. ..+.|+||..... +........... ..+.+++-+.+..+||.- -.-|.
T Consensus 98 ~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP--------------kGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 98 KAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP--------------KGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred eeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC--------------CceEeecCCCCceEEEcCCCccce
Confidence 99999865 45554 3578999998743 332222221111 135555433344455543 34589
Q ss_pred EEEEECCCCeE--EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEeccccc--------CCCCCeeEEEeccCCC
Q 017421 251 IYVYDLEANKL--SLRILAHTSDVNTVCFGDESGHLIYSGSDDNL-CKVNSVLLLT--------RSINPCNKYLFNPCNK 319 (372)
Q Consensus 251 i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~-i~vwd~~~~~--------~~~~~v~~~~~s~~g~ 319 (372)
|.|-|+...+. ...+.+|.+.|.|++.+ .+|.++||+|..|+ |||||..+.. .....|++++|||+..
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 99999986654 47788999999999999 99999999999998 8999987433 3446799999999999
Q ss_pred eEEEEeeeeEEEeeceEEEeecc
Q 017421 320 YLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 320 ~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+|+++++ .+++.++.+.
T Consensus 240 ~LavsSd------KgTlHiF~l~ 256 (346)
T KOG2111|consen 240 WLAVSSD------KGTLHIFSLR 256 (346)
T ss_pred EEEEEcC------CCeEEEEEee
Confidence 9999963 2555555443
No 231
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=115.24 Aligned_cols=200 Identities=13% Similarity=0.175 Sum_probs=150.9
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHI 195 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~v 195 (372)
..+..|.+-|+.+.|+..|..|++|+.|..|.+||...+..... ...+|...|....|-| +.+-+++++.||++++
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45788999999999999999999999999999999988755443 4557877888888988 5567999999999998
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEee---cCCC-
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANKLSLRIL---AHTS- 270 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~- 270 (372)
=.+............. .|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.+...+. .+..
T Consensus 214 s~i~~t~~~e~t~rl~-------------~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 214 SEILETGYVENTKRLA-------------PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred eeeccccceecceecc-------------cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 7765433222111111 367799999999975 567899999999999998875433322 2333
Q ss_pred --CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------------------CCCCCeeEEEeccCC-CeEEEEeeeeE
Q 017421 271 --DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------------------RSINPCNKYLFNPCN-KYLIIYLILVI 329 (372)
Q Consensus 271 --~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------------------~~~~~v~~~~~s~~g-~~l~~~~~~~~ 329 (372)
..+.++..|.+...+++++.|-.+++||.+.+. .....|++++|+.++ .+|++..
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn---- 356 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN---- 356 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec----
Confidence 567889997777899999999999999987432 233468999999664 5666664
Q ss_pred EEeeceEEEe
Q 017421 330 SIYSPNILLD 339 (372)
Q Consensus 330 ~~~d~~i~lw 339 (372)
|-.|+|+
T Consensus 357 ---De~IYLF 363 (559)
T KOG1334|consen 357 ---DEDIYLF 363 (559)
T ss_pred ---ccceEEe
Confidence 4555555
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.2e-11 Score=104.68 Aligned_cols=177 Identities=12% Similarity=0.105 Sum_probs=134.1
Q ss_pred CceEEEEECCCCCE-EEEEeCC--CcEEEEeCCCCeEEEEeeeccc------CCcceEEEEECCC--CCEEEEEeCCCeE
Q 017421 125 SRAYVSQFSADGSL-FVAGFQA--SQIRIYDVERGWKIQKDILAKS------LRWTVTDTSLSPD--QRHLVYASMSPIV 193 (372)
Q Consensus 125 ~~v~~~~~s~~~~~-l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~--~~~l~~~~~dg~i 193 (372)
..+..|.-++.... +++|+.. ..+.|||++....+......+. .+-.++++.|-+. ...|++++.-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 55666777775554 5568888 7899999998755443221111 1124678899987 8899999999999
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-eecCCCCe
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-ILAHTSDV 272 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~v 272 (372)
++||.+.++........ -..+++++...|++++|++|..-|.+..||++.++.... +.+-.+.|
T Consensus 229 R~YDt~~qRRPV~~fd~---------------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDF---------------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred EEecCcccCcceeEecc---------------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCc
Confidence 99999976532211111 123899999999999999999999999999999987766 77888999
Q ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----CCCCCeeEEEeccC
Q 017421 273 NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----RSINPCNKYLFNPC 317 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~v~~~~~s~~ 317 (372)
+++..+ |...++++++-|..|||+|+.+-+ -....++.+.+.++
T Consensus 294 rsih~h-p~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 294 RSIHCH-PTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred ceEEEc-CCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999 999999999999999999998622 22345566666554
No 233
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.9e-10 Score=102.27 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=87.6
Q ss_pred cccEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccc
Q 017421 227 SFGIFSLKFSTDGRELVAG--SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLL 301 (372)
Q Consensus 227 ~~~i~~~~~sp~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~ 301 (372)
.++|.++.|+|+++-+++. -.-..+.|||++ +.++..+ .+++-+++-|+ |.|++|+.++.+ |.|-|||+..
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn-p~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN-PHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC-CCCCEEEEeecCCCCCceEEEeccc
Confidence 5789999999999877654 445679999988 4555555 35677889999 999999988854 7899999975
Q ss_pred cc----CCCCCeeEEEeccCCCeEEEEeee-eEEEeeceEEEeeccc
Q 017421 302 LT----RSINPCNKYLFNPCNKYLIIYLIL-VISIYSPNILLDNYFL 343 (372)
Q Consensus 302 ~~----~~~~~v~~~~~s~~g~~l~~~~~~-~~~~~d~~i~lw~~~~ 343 (372)
.+ ......+-+.|+|||+++++++-. .+++ |+.++||+|.-
T Consensus 346 ~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrv-dNg~KiwhytG 391 (566)
T KOG2315|consen 346 RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRV-DNGIKIWHYTG 391 (566)
T ss_pred hhhccccccCCceEEEEcCCCcEEEEEeccccEEe-cCCeEEEEecC
Confidence 33 223445778999999999988644 7788 99999999864
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1e-10 Score=109.39 Aligned_cols=172 Identities=19% Similarity=0.178 Sum_probs=116.5
Q ss_pred CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCCCceeeecceeecccccceeccC
Q 017421 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (372)
..|.++|...... .. ...+...+.+..|+|||+.|+..+. +..|++||+.++....+..
T Consensus 182 ~~l~~~d~dg~~~-~~---lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-------------- 243 (435)
T PRK05137 182 KRLAIMDQDGANV-RY---LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-------------- 243 (435)
T ss_pred eEEEEECCCCCCc-EE---EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec--------------
Confidence 3788888865422 22 3345567999999999999988764 4689999999887543322
Q ss_pred CCCccccEEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEE
Q 017421 223 DGGYSFGIFSLKFSTDGRELV-AGSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKV 296 (372)
Q Consensus 223 ~~~h~~~i~~~~~sp~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~v 296 (372)
+...+...+|+|||+.|+ +.+.++. |.+||+.+++. ..+..+........|+ |||+.|+..+. +| .|.+
T Consensus 244 ---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s-pDG~~i~f~s~~~g~~~Iy~ 318 (435)
T PRK05137 244 ---FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS-PDGSQIVFESDRSGSPQLYV 318 (435)
T ss_pred ---CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc-CCCCEEEEEECCCCCCeEEE
Confidence 223566789999998875 4455554 88889987765 4455566667789999 99998887663 33 5777
Q ss_pred Eecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421 297 NSVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 297 wd~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
||+... ......+..+.|+|+|+.|+...... -+..|.+|+...
T Consensus 319 ~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~---~~~~i~~~d~~~ 367 (435)
T PRK05137 319 MNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG---GQFSIGVMKPDG 367 (435)
T ss_pred EECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC---CceEEEEEECCC
Confidence 776532 12334566789999999998764210 012455666543
No 235
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.3e-11 Score=116.40 Aligned_cols=209 Identities=14% Similarity=0.060 Sum_probs=154.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
...|....+..+...++.++.+..+.+||...+....+........ ....-+.++++.-++++|+--+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 3344445666677888888888999999998775544322111100 123345567788889999999999999987322
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE-EeecCCCCeEEEEEeCCC
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL-RILAHTSDVNTVCFGDES 281 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~ 281 (372)
. .. ...||.+.|..+.|+-||+++++.|+|.++++|++.+.+... ...+|...|..++|. |+
T Consensus 167 ~-p~---------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~-~n 229 (967)
T KOG0974|consen 167 K-PI---------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFL-PN 229 (967)
T ss_pred C-cc---------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEec-cc
Confidence 1 11 012788899999999999999999999999999999988665 666899999999999 65
Q ss_pred CCEEEEEeCCCeEEEEecc-----cccCC-CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421 282 GHLIYSGSDDNLCKVNSVL-----LLTRS-INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 282 ~~~l~s~~~dg~i~vwd~~-----~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
.+++++.|-++++|+.. ...+| ...+..++..++...++++. .|+.+++|++..........+-.+
T Consensus 230 --~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g------~Ds~lk~~~l~~r~~e~~~~~~~~ 301 (967)
T KOG0974|consen 230 --RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG------NDSTLKLWDLNGRGLEGHVEQSSL 301 (967)
T ss_pred --eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeec------cCcchhhhhhhccccccceeeeee
Confidence 99999999999999765 22333 45688999888877776664 699999999887665555544444
Q ss_pred Ee
Q 017421 356 FS 357 (372)
Q Consensus 356 ~~ 357 (372)
+.
T Consensus 302 ~~ 303 (967)
T KOG0974|consen 302 LS 303 (967)
T ss_pred ec
Confidence 43
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=6.1e-11 Score=110.52 Aligned_cols=175 Identities=22% Similarity=0.215 Sum_probs=113.3
Q ss_pred CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccC
Q 017421 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAAD 222 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (372)
..|.++|.... .... ...+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+...
T Consensus 176 ~~L~~~D~dG~-~~~~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~------------- 238 (427)
T PRK02889 176 YQLQISDADGQ-NAQS---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF------------- 238 (427)
T ss_pred cEEEEECCCCC-CceE---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-------------
Confidence 36777777543 2222 22445578899999999999887653 4599999998875433221
Q ss_pred CCCccccEEEEEEcCCCCEEE-EEeCCCeEEEE--ECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEe
Q 017421 223 DGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVY--DLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNS 298 (372)
Q Consensus 223 ~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd 298 (372)
...+....|+|||+.|+ +.+.++...|| |+..+. ...+..+........|+ |||+.|+..+. ++...+|.
T Consensus 239 ----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 239 ----KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred ----CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEE
Confidence 12456789999999886 45667765555 555444 45555555566778999 99998876654 46667776
Q ss_pred cccc-------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceE
Q 017421 299 VLLL-------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRT 346 (372)
Q Consensus 299 ~~~~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~ 346 (372)
+... ...........|+|||++|+...... -+..|.+||+.+++.
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG---GAFKLYVQDLATGQV 364 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC---CcEEEEEEECCCCCe
Confidence 5311 11222345689999999998664211 012678888877654
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=9.1e-11 Score=106.07 Aligned_cols=188 Identities=16% Similarity=0.092 Sum_probs=145.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEE--------------------CCCCCEEEEEeCCCeE
Q 017421 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSL--------------------SPDQRHLVYASMSPIV 193 (372)
Q Consensus 134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~~~l~~~~~dg~i 193 (372)
|-..++|....||.++||+...++.-..+.....-.+..++..| +-|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999988554443333333334444444 1234568888899999
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN 273 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 273 (372)
.+|+...++....... ++|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..+......+.
T Consensus 83 ~~ys~~~g~it~~~st--------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLST--------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEEecCCeEEEEEec--------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 9999998886433321 15778999999999888999999999999999999999999998888999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccC-----CCeEEEEeeeeEEEeeceEEEeecc
Q 017421 274 TVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPC-----NKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~-----g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+++.+ |||..+++++ +.|++||+. ++.+|.++|.++.|..+ |.++.++.. .+.-+.+|-..
T Consensus 149 sl~is-~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~ 220 (541)
T KOG4547|consen 149 SLCIS-PDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVE 220 (541)
T ss_pred eEEEc-CCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEE
Confidence 99999 9999999885 679999997 45699999999999887 777776632 24445566544
Q ss_pred c
Q 017421 343 L 343 (372)
Q Consensus 343 ~ 343 (372)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 3
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.37 E-value=5e-11 Score=98.94 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=132.2
Q ss_pred CCceEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc---ceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 124 TSRAYVSQFSA---DGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRW---TVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~---~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
...+..+.|.. +|. .++-+...|.|.+|..........+.......- ...++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 44566666643 444 456667789999998765433332222222111 24578899999999999999999866
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeEEEE-eecCCCCeE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDLE-ANKLSLR-ILAHTSDVN 273 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~~-~~~~~~~-~~~~~~~v~ 273 (372)
+........... .+ .|..++....|+.. .+++.+|++|+.+.-||++ .++.+.. .+.|...|.
T Consensus 149 ~~t~~~le~vq~-wk-------------~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~ 214 (339)
T KOG0280|consen 149 YETEMVLEKVQT-WK-------------VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVV 214 (339)
T ss_pred ecceeeeeeccc-cc-------------ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceE
Confidence 655444332222 11 46778888888764 3688999999999999999 3444444 456889999
Q ss_pred EEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCC--eEEEE
Q 017421 274 TVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNK--YLIIY 324 (372)
Q Consensus 274 ~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~--~l~~~ 324 (372)
++.-+||.+.+|++|+.|..|++||.|... ...+.|+.+.++|.-. .|+++
T Consensus 215 SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C 273 (339)
T KOG0280|consen 215 SIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC 273 (339)
T ss_pred EEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHH
Confidence 999999999999999999999999999432 4557899999999743 44444
No 239
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.3e-10 Score=106.96 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=113.6
Q ss_pred cccCCCCceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC--e
Q 017421 119 PVDQTTSRAYVSQFSADGSLFVA-GFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP--I 192 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~~l~~-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~ 192 (372)
.+..+.+...+++|+|||+.|+. .+.+| .|++||+.++... . ...+.......+|+||++.|+..+. +| .
T Consensus 242 ~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~---lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~ 317 (433)
T PRK04922 242 LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-R---LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQ 317 (433)
T ss_pred EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-E---CccCCCCccceEECCCCCEEEEEECCCCCce
Confidence 44445556668899999998764 45555 5999999887432 2 2233334567899999999887764 44 4
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEEeecCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLRILAHT 269 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~ 269 (372)
|+++|+.+++...+.. . ......++|+|||++|+..+.++ .|.+||+.+++.. .+. +.
T Consensus 318 iy~~dl~~g~~~~lt~--~---------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~ 378 (433)
T PRK04922 318 IYRVAASGGSAERLTF--Q---------------GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PG 378 (433)
T ss_pred EEEEECCCCCeEEeec--C---------------CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CC
Confidence 7777777765433321 0 01344689999999998765433 5999999887654 343 33
Q ss_pred CCeEEEEEeCCCCCEEEEEeCC---CeEEEEeccc-----ccCCCCCeeEEEecc
Q 017421 270 SDVNTVCFGDESGHLIYSGSDD---NLCKVNSVLL-----LTRSINPCNKYLFNP 316 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~d---g~i~vwd~~~-----~~~~~~~v~~~~~s~ 316 (372)
.....+.|+ |||++|+..+.+ +.|.++++.. +..+...+..++|+|
T Consensus 379 ~~~~~p~~s-pdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 379 SLDESPSFA-PNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCCceEC-CCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 345567999 999988776643 3577777642 222334556667765
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=6.2e-09 Score=94.31 Aligned_cols=203 Identities=14% Similarity=0.198 Sum_probs=133.9
Q ss_pred CCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeee-c----------ccCCcceEEEEECCCCCEEEEEeC-C
Q 017421 124 TSRAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDIL-A----------KSLRWTVTDTSLSPDQRHLVYASM-S 190 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~-~----------~~~~~~v~~~~~~~~~~~l~~~~~-d 190 (372)
......++++|++++|+++.+ +|.|.++++.....+..... . ......+.++.|+|+++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 455677999999999988864 89999999987433322211 1 011234789999999999887654 4
Q ss_pred CeEEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCe--EEE
Q 017421 191 PIVHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLE--ANK--LSL 263 (372)
Q Consensus 191 g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~--~~~--~~~ 263 (372)
..|.+|++.... ....... ... .....+.+.|+|+++++++.. .++.|.++++. ++. .+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~-~~~------------~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSI-KVP------------PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEE-ECS------------TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeecc-ccc------------cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 579999997765 2221111 111 224688999999999886655 46789999988 443 223
Q ss_pred EeecC------CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccc----c------cCCCCCeeEEEeccCCCeEEEEee
Q 017421 264 RILAH------TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLL----L------TRSINPCNKYLFNPCNKYLIIYLI 326 (372)
Q Consensus 264 ~~~~~------~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~----~------~~~~~~v~~~~~s~~g~~l~~~~~ 326 (372)
.+... ......++++ |+|++|+++. ..+.|.+|++.. + .........++++|+|++|+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~i~is-pdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAIS-PDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EeeeccccccccCCceeEEEe-cCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 33211 1257889999 9999888766 567899999841 1 123445799999999999998842
Q ss_pred eeEEEeeceEEEeec--ccce
Q 017421 327 LVISIYSPNILLDNY--FLLR 345 (372)
Q Consensus 327 ~~~~~~d~~i~lw~~--~~~~ 345 (372)
.+++|.+|++ .+|.
T Consensus 312 -----~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 312 -----DSNTVSVFDIDPDTGK 327 (345)
T ss_dssp -----TTTEEEEEEEETTTTE
T ss_pred -----CCCeEEEEEEeCCCCc
Confidence 3567777766 4555
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.32 E-value=1.7e-09 Score=98.04 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=122.6
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421 137 SLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (372)
Q Consensus 137 ~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (372)
+++ ++-..++.|.|.|..+.+.+...... ......+.|+||++++++++.||.|.++|+.+.+........
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----- 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----- 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-----
Confidence 444 45556899999999988666653322 223345789999999999999999999999999875544422
Q ss_pred cceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEEEeecC-------CCCeEEEEEeCCCCC-EEE
Q 017421 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSLRILAH-------TSDVNTVCFGDESGH-LIY 286 (372)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~-~l~ 286 (372)
.....+++++||++++++. ..+.+.++|.++.+.+..+... ...+.++..+ +... +++
T Consensus 78 ------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv 144 (369)
T PF02239_consen 78 ------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS-PGRPEFVV 144 (369)
T ss_dssp ------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEE
T ss_pred ------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec-CCCCEEEE
Confidence 2567899999999998765 5799999999999988887632 3456788888 5566 444
Q ss_pred EEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421 287 SGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS 349 (372)
Q Consensus 287 s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~ 349 (372)
+.-..+.|.+.|..... ..........|+|++++++++.. .++.+-++|..+++.+..
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTTEEEEE
T ss_pred EEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccceEEEE
Confidence 44445888887865321 23345678899999999877631 245666777776665543
No 242
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.31 E-value=1.1e-10 Score=109.11 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=115.9
Q ss_pred CcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCC
Q 017421 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDG 224 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (372)
+.+.||++........ ....+..|+++.|+| +..+++.|+.+|+|.+||++.+.......+.. ...
T Consensus 222 ~~~~vW~~~~p~~Pe~---~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~----------~~~ 288 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL---VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA----------LEV 288 (555)
T ss_pred ceEEEEecCCCCCceE---EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc----------ccc
Confidence 4789999987622222 223445799999999 67788889999999999998876522111110 112
Q ss_pred CccccEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeE-----------------------------------------
Q 017421 225 GYSFGIFSLKFSTDG--RELVAGSSDDCIYVYDLEANKL----------------------------------------- 261 (372)
Q Consensus 225 ~h~~~i~~~~~sp~~--~~l~s~s~dg~i~iwd~~~~~~----------------------------------------- 261 (372)
.|..++..+.|..+- .-|++++.||.|..|+++.-..
T Consensus 289 sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe 368 (555)
T KOG1587|consen 289 SHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE 368 (555)
T ss_pred cCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC
Confidence 577888899886643 3488888899999997653110
Q ss_pred ----------------------EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEE
Q 017421 262 ----------------------SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKY 312 (372)
Q Consensus 262 ----------------------~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~ 312 (372)
...+..|.++|+++.++|-...+|.+++ |.+++||.... ...+...|+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeee
Confidence 0001134567777777733333444443 78888887651 22455568888
Q ss_pred EeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 313 LFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 313 ~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+|||..--+++..+ -||++.+||+...
T Consensus 448 aWSptrpavF~~~d-----~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 448 AWSPTRPAVFATVD-----GDGNLDIWDLLQD 474 (555)
T ss_pred EEcCcCceEEEEEc-----CCCceehhhhhcc
Confidence 88887655554432 2788888886543
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=4.9e-10 Score=94.59 Aligned_cols=226 Identities=13% Similarity=0.098 Sum_probs=137.2
Q ss_pred eEeeeeeCCCCCccccCCCCceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE
Q 017421 106 HMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL 184 (372)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 184 (372)
+.+|.+...+-...++.-..++.+++|||||+.|+ +...+-.|.||.+.+..... .+..+..+..++|+|||++.
T Consensus 73 vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 73 VQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred EEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCcee
Confidence 34555555555556677788899999999997655 56678899999998874433 22223357889999999988
Q ss_pred EEEeCCCeEEEEECCCCc---eeeecce-eecccccceeccCC--------------CCc-cccEEEEEEcCCCCEEEEE
Q 017421 185 VYASMSPIVHIVDVGSGT---MESLANV-TEIHDGLDFSAADD--------------GGY-SFGIFSLKFSTDGRELVAG 245 (372)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~~~~~~~~~~~--------------~~h-~~~i~~~~~sp~~~~l~s~ 245 (372)
+..+.......+++..-+ ....... .....++..+|+.. --| .-.+..++|+|.+++|+.|
T Consensus 149 ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 149 AILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred eeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEee
Confidence 877653111011100000 0000000 00001111222110 001 1368889999999999999
Q ss_pred eCCCeEEEEECCCCeEEEE------------------------------------------------------------e
Q 017421 246 SSDDCIYVYDLEANKLSLR------------------------------------------------------------I 265 (372)
Q Consensus 246 s~dg~i~iwd~~~~~~~~~------------------------------------------------------------~ 265 (372)
+.|+.+++.+--+.+.... +
T Consensus 229 syD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~l 308 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKL 308 (447)
T ss_pred ccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecc
Confidence 9999988865333221110 0
Q ss_pred e------cCCCCeEEEEEeCCCCCEEEEEeC--CCeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 266 L------AHTSDVNTVCFGDESGHLIYSGSD--DNLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 266 ~------~~~~~v~~~~~sp~~~~~l~s~~~--dg~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
+ .....+.-++|+ +|..++++-.. -+.+-+||++.++ ....+|....|+|.-..|+.+++
T Consensus 309 kp~tD~pnPk~g~g~lafs-~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------ 381 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFS-CDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------ 381 (447)
T ss_pred cCCCCCCCcccccceeeec-CCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------
Confidence 0 012245568999 99999988753 3679999998665 34578999999999888887743
Q ss_pred eceEEEeecc
Q 017421 333 SPNILLDNYF 342 (372)
Q Consensus 333 d~~i~lw~~~ 342 (372)
...+++|...
T Consensus 382 ~srLY~W~ps 391 (447)
T KOG4497|consen 382 KSRLYFWAPS 391 (447)
T ss_pred CceEEEEcCC
Confidence 2335566543
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=5.1e-11 Score=114.05 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=124.2
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeeccee
Q 017421 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVT 210 (372)
Q Consensus 131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 210 (372)
-++++.-++++|+--+.|.+|+....+... ...+|.+.|.++.|+.||+++++.+.|..+++|++++.+.....-
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~-- 214 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTG-- 214 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccc--
Confidence 467778889999999999999987432222 467999999999999999999999999999999999987644111
Q ss_pred ecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-CeEEEEEeCCCCCEEEEEe
Q 017421 211 EIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-DVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 211 ~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~s~~ 289 (372)
=||+..|..+.|+|+ .+++++.|.+.++|+.. +..+..+.+|.. .+..++.. ++...++|++
T Consensus 215 -------------fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~-~~~~~~vT~g 277 (967)
T KOG0974|consen 215 -------------FGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVP-IGVIIKVTGG 277 (967)
T ss_pred -------------ccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEc-CCceEEEeec
Confidence 179999999999998 89999999999999776 444457777754 78899997 8888999999
Q ss_pred CCCeEEEEecc
Q 017421 290 DDNLCKVNSVL 300 (372)
Q Consensus 290 ~dg~i~vwd~~ 300 (372)
.|+.+++||+.
T Consensus 278 ~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 278 NDSTLKLWDLN 288 (967)
T ss_pred cCcchhhhhhh
Confidence 99999999986
No 245
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=1.8e-11 Score=102.36 Aligned_cols=238 Identities=13% Similarity=0.205 Sum_probs=162.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEe-eecccC------------CcceEEEEECCCC--CEEEEE
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKD-ILAKSL------------RWTVTDTSLSPDQ--RHLVYA 187 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~-~~~~~~------------~~~v~~~~~~~~~--~~l~~~ 187 (372)
...|+++.|...|.+|++|...|.|.+|.-+... +..+. .....| ...|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999866542 11111 011222 2357888887754 457778
Q ss_pred eCCCeEEEEECCCCceeeecc--eee----cccc-------------------cceecc--CCCCccccEEEEEEcCCCC
Q 017421 188 SMSPIVHIVDVGSGTMESLAN--VTE----IHDG-------------------LDFSAA--DDGGYSFGIFSLKFSTDGR 240 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~--~~~----~~~~-------------------~~~~~~--~~~~h~~~i~~~~~sp~~~ 240 (372)
+.|.+|++|.+.......+.. +.. +..| ++..|. -...|...|+++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999986542211110 000 0000 000000 0135788899999999988
Q ss_pred EEEEEeCCCeEEEEECCCCe---EEEEeecCC-----CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----------
Q 017421 241 ELVAGSSDDCIYVYDLEANK---LSLRILAHT-----SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL----------- 301 (372)
Q Consensus 241 ~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~-----~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~----------- 301 (372)
.++++. |-.|.+|++.-.. .+..++.|. .-|++..|+|...+.+...+..|.|++-|+|.
T Consensus 186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 877764 7889999987433 223334443 35788999988888999999999999999981
Q ss_pred ---c--------cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce-EEEEEeeeEEEeeecccCCccccc
Q 017421 302 ---L--------TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR-TFYSFMVHILFSGYLHNDHNHRCA 369 (372)
Q Consensus 302 ---~--------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~-~~~~~~~h~~~~~~~~~~~~~~~~ 369 (372)
+ .+....|..+.|+++|+++++-. =.++++||+...+ +++....|.....-|+..++++|.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 0 12345788999999999998763 2567888887665 677777887777777777777764
No 246
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.27 E-value=2.9e-10 Score=94.47 Aligned_cols=198 Identities=15% Similarity=0.062 Sum_probs=136.5
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEECCCCceee
Q 017421 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
..++.|++.+..++++..+|.+.+-+.... .+.+....+.|..+.+...|+. +.+.+.+|+.|+.+..||++..+ ..
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence 567889999999999999999986654443 4444445778888999999987 55688999999999999999443 11
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCCC
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGH 283 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~ 283 (372)
+..... -|...|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|..+.++|....
T Consensus 202 i~~n~k-------------vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 202 IWHNSK-------------VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFH 267 (339)
T ss_pred eeecce-------------eeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhh
Confidence 222111 3677899998876 478999999999999999984 55554433 4478999999954443
Q ss_pred EEEEEeCCCeEEEEecc-----------cccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEE-Eeecccce
Q 017421 284 LIYSGSDDNLCKVNSVL-----------LLTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNIL-LDNYFLLR 345 (372)
Q Consensus 284 ~l~s~~~dg~i~vwd~~-----------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~-lw~~~~~~ 345 (372)
.++.++.-.-.+|-+.. ..+.|.+-++.-.|.....+++++ +.||..++ +|-..++.
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-----sFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-----SFYDKKIRQLWLHITGE 336 (339)
T ss_pred HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeee-----eccccceeeeeeeccCC
Confidence 33322222223333322 334566666777775554567775 56998866 88666554
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.4e-10 Score=102.96 Aligned_cols=177 Identities=16% Similarity=0.198 Sum_probs=134.7
Q ss_pred eeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec---ccCCc-----ceEEEEECCC
Q 017421 109 SRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILA---KSLRW-----TVTDTSLSPD 180 (372)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~ 180 (372)
.++..+.....+....+.++++..++...+|++|+.+|.|..||......+..+... ..|.+ .|+++.|+.+
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD 239 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC
Confidence 344445555556666789999999999999999999999999999876444332211 12222 4999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 017421 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~ 258 (372)
|-.+++|+.+|.+.+||+++.+....... +...+|..+.|.+. ++.+++. ....++|||-.+
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh---------------~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKDH---------------GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECT 303 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeeccc---------------CCccceeeecccccCCCceEEec-chHHhhhccccc
Confidence 99999999999999999999887544432 34568999999875 3445544 357799999999
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT 303 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~ 303 (372)
|+....+. ....+..+++- |++-+++++..++.+..|=+..+.
T Consensus 304 Gk~~asiE-pt~~lND~C~~-p~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 304 GKPMASIE-PTSDLNDFCFV-PGSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred CCceeecc-ccCCcCceeee-cCCceEEEecCCCcceeEEccccC
Confidence 99877776 45669999999 888899999888888777665443
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=3.4e-09 Score=93.74 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=144.1
Q ss_pred ECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-eEEEEECCCCceeeecce
Q 017421 132 FSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESLANV 209 (372)
Q Consensus 132 ~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~ 209 (372)
|++ +|++++..+. |+..|.+...+..++. ++...|.-..+.-++.-++.|..|| .+-|+|.++++......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~- 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK- 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-
Confidence 555 6888888887 7888888877644442 5555688888888888999999999 89999999988654433
Q ss_pred eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 289 (372)
.-+.|..+..+|+|++++.+.....+.+.|+.+++....-+...+-|+.+.|+ |++++||.+-
T Consensus 400 ----------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~-~nsr~iAYaf 462 (668)
T COG4946 400 ----------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH-PNSRWIAYAF 462 (668)
T ss_pred ----------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc-CCceeEEEec
Confidence 22479999999999999999988999999999998755555566789999999 9999999886
Q ss_pred CCC----eEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 290 DDN----LCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 290 ~dg----~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
-+| .|+++|+...+ .....-.+.+|.|+|++|.--+...+.- ...-.++++.-.+..+.|.+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdP-s~Drv~fnf~f~~vskPylv 533 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDP-SNDRVIFNFSFQRVSKPYLV 533 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCC-CCCeeEEEEEEeeeccceEE
Confidence 665 58999987432 3334446789999999987654322211 11223445554555555544
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.25 E-value=1.5e-09 Score=101.29 Aligned_cols=172 Identities=21% Similarity=0.161 Sum_probs=112.5
Q ss_pred cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (372)
Q Consensus 147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
.|.++|..... ... ...+...+....|+||+++|+.+... ..|++||+.++.......
T Consensus 171 ~l~~~d~~g~~-~~~---l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--------------- 231 (417)
T TIGR02800 171 ELQVADYDGAN-PQT---ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--------------- 231 (417)
T ss_pred eEEEEcCCCCC-CEE---eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------------
Confidence 58888876442 222 22344468889999999999987654 479999999876533222
Q ss_pred CCccccEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEE
Q 017421 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVN 297 (372)
Q Consensus 224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vw 297 (372)
+...+..++|+|||+.|+. .+.++ .|++||+.++.. ..+..+........|+ ++|+.|+..+. ++ .|.++
T Consensus 232 --~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 232 --FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred --CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEE
Confidence 1124566899999987764 44443 589999987754 3444455555678999 89988876654 33 57777
Q ss_pred ecccc-----cCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 298 SVLLL-----TRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 298 d~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
|+... ..+...+..+.|+|+|++++.+.... -...|.+||..++
T Consensus 308 d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~---~~~~i~~~d~~~~ 356 (417)
T TIGR02800 308 DADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG---GGFNIAVMDLDGG 356 (417)
T ss_pred ECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC---CceEEEEEeCCCC
Confidence 76532 23445567889999999988774221 0124566666554
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=4.1e-08 Score=89.01 Aligned_cols=209 Identities=18% Similarity=0.181 Sum_probs=133.5
Q ss_pred CCceEEEEECCCCCEEEEEeC----CCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEE
Q 017421 124 TSRAYVSQFSADGSLFVAGFQ----ASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVD 197 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd 197 (372)
......++++|++++|.+... ++.|..|.+... ..+...............++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 445667889999999988766 578999998764 233222222212335678999999999999875 89999999
Q ss_pred CCCC-ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCe--E--EEEee-cCCC
Q 017421 198 VGSG-TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEANK--L--SLRIL-AHTS 270 (372)
Q Consensus 198 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~~~--~--~~~~~-~~~~ 270 (372)
+... ........ ..+.+. .+.....-.....++.|+|+++++++... ...|.+|++.... . ...+. ....
T Consensus 116 l~~~g~l~~~~~~-~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 116 LDDDGSLGEVVQT-VRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp ECTTSEEEEEEEE-EESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred ccCCcccceeeee-cccCCC--CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 9874 33222111 111111 11111122346788999999998887654 3579999997654 2 12222 3455
Q ss_pred CeEEEEEeCCCCCEEEEEe-CCCeEEEEecc--c-----------cc---CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 271 DVNTVCFGDESGHLIYSGS-DDNLCKVNSVL--L-----------LT---RSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~--~-----------~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
....+.|+ |+++++++.. .++.|.++++. . +. ........++++|||++|+++..+ +
T Consensus 193 GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~ 266 (345)
T PF10282_consen 193 GPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----S 266 (345)
T ss_dssp SEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----T
T ss_pred CCcEEEEc-CCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----C
Confidence 78899999 8998887665 57889999886 1 10 112257889999999999988422 5
Q ss_pred ceEEEeec
Q 017421 334 PNILLDNY 341 (372)
Q Consensus 334 ~~i~lw~~ 341 (372)
..|.++++
T Consensus 267 ~sI~vf~~ 274 (345)
T PF10282_consen 267 NSISVFDL 274 (345)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEEE
Confidence 56666666
No 251
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=5.5e-08 Score=83.69 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=142.7
Q ss_pred CceeEeeeeeCCCC---CccccCCCCceEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CeEEEEeeecccCCcceEE
Q 017421 103 DCCHMLSRYLPVNG---PWPVDQTTSRAYVSQFSADGSLFVAGFQ---ASQIRIYDVER--GWKIQKDILAKSLRWTVTD 174 (372)
Q Consensus 103 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~ 174 (372)
.+.+.+|.+..... ...+-...+.++-++|+|+++.|.++-. +|.|-.|.++. |.. ...........+.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-t~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-TFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-EEeeccccCCCCCeE
Confidence 45566777763332 2233456788899999999998887744 47788887765 432 221112222234588
Q ss_pred EEECCCCCEEEEEeC-CCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-CeE
Q 017421 175 TSLSPDQRHLVYASM-SPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-DCI 251 (372)
Q Consensus 175 ~~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g~i 251 (372)
+++++++++++++.. .|.|.++-++. |......... .+.+ ..++. ..-..-+....|.|++++|++.+.. -.|
T Consensus 94 vsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g--~~p~~-rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 94 VSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTG--SGPHE-RQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCC--CCCCc-cccCCccceeeeCCCCCEEEEeecCCceE
Confidence 999999999999876 68899999976 4332222211 1111 00110 0011127788999999999887653 359
Q ss_pred EEEECCCCeEEEEee---cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEecccc-------c---------CCCCCeeE
Q 017421 252 YVYDLEANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLL-------T---------RSINPCNK 311 (372)
Q Consensus 252 ~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~-------~---------~~~~~v~~ 311 (372)
.+|++..+.....-. ........|.|+ |++++....+ -+++|-+|..... + ....+...
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa 248 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFH-PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA 248 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEc-CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE
Confidence 999999776432211 344567899999 9999887765 5899999997631 1 23456788
Q ss_pred EEeccCCCeEEEEe
Q 017421 312 YLFNPCNKYLIIYL 325 (372)
Q Consensus 312 ~~~s~~g~~l~~~~ 325 (372)
+..+|||++|.++.
T Consensus 249 Ihis~dGrFLYasN 262 (346)
T COG2706 249 IHISPDGRFLYASN 262 (346)
T ss_pred EEECCCCCEEEEec
Confidence 99999999999983
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=3.4e-08 Score=84.89 Aligned_cols=197 Identities=16% Similarity=0.188 Sum_probs=134.6
Q ss_pred ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeeecccCCcc----------eEEEEECCCCCEEEEEeC-CCeE
Q 017421 126 RAYVSQFSADGSLFVAGFQ-ASQIRIYDVERGWKIQKDILAKSLRWT----------VTDTSLSPDQRHLVYASM-SPIV 193 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i 193 (372)
+...++++++|++++++.+ .|.|.++.++....+........|.+. +....+.|++++|++... --.|
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRI 169 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceE
Confidence 3378999999999988765 578999999764333333223333333 888999999999988755 3469
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCC--e--EEEEee--
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEAN--K--LSLRIL-- 266 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~--~--~~~~~~-- 266 (372)
.+|++..|+......... . .....+.|.|+|++++..... .+++|.+|..... + .++.+.
T Consensus 170 ~~y~~~dg~L~~~~~~~v-~------------~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 170 FLYDLDDGKLTPADPAEV-K------------PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEEEcccCcccccccccc-C------------CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 999999777543332211 1 123678999999999886555 4899999998763 2 222222
Q ss_pred ----cCCCCeEEEEEeCCCCCEEEEEeC-CCeEEEEecccc----------cCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 267 ----AHTSDVNTVCFGDESGHLIYSGSD-DNLCKVNSVLLL----------TRSINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 267 ----~~~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~~~----------~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
.......++..+ ++|++|+++.. ...|-+|.+... ..+......+.|+|+|++|+++..+
T Consensus 237 P~dF~g~~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~---- 311 (346)
T COG2706 237 PEDFTGTNWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK---- 311 (346)
T ss_pred ccccCCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence 123456788999 99999998753 346777776521 1344456889999999999998532
Q ss_pred eeceEEEeec
Q 017421 332 YSPNILLDNY 341 (372)
Q Consensus 332 ~d~~i~lw~~ 341 (372)
+.+|.++..
T Consensus 312 -sd~i~vf~~ 320 (346)
T COG2706 312 -SDNITVFER 320 (346)
T ss_pred -CCcEEEEEE
Confidence 344556543
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=2.4e-09 Score=91.03 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=141.9
Q ss_pred ccCCceeEeeeeeCCCCCcc--ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEE
Q 017421 100 SAADCCHMLSRYLPVNGPWP--VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTS 176 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~ 176 (372)
.+.|+..++|.-....+.+. ....+.+++++.++++...|++|-..|++.-+.+... +..........|..++..+-
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~i 121 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIV 121 (404)
T ss_pred ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEE
Confidence 34455666766655544333 3456888999999999999999999999998877543 12222223557888999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc------cceeccC-------------------CCCccccEE
Q 017421 177 LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG------LDFSAAD-------------------DGGYSFGIF 231 (372)
Q Consensus 177 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~~-------------------~~~h~~~i~ 231 (372)
|+....++++.+.|..+.---.+.+....-......... ..|.+.. ..+|.+.+.
T Consensus 122 f~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 122 FSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred ecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 999888999998887764333333322211111111111 1111110 147899999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 232 SLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 232 ~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+++|.|....|.+|..|..+.+||+.-++ ....+.+|...|..+..- +.-+.+++++.||.|.+|+++
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEecc
Confidence 99999999999999999999999997543 345677899999999988 778899999999999999975
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2e-08 Score=92.86 Aligned_cols=174 Identities=13% Similarity=0.097 Sum_probs=113.1
Q ss_pred ceEEEEECCCCCE-EEEEeCC---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEEC
Q 017421 126 RAYVSQFSADGSL-FVAGFQA---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDV 198 (372)
Q Consensus 126 ~v~~~~~s~~~~~-l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~ 198 (372)
.+....|+|||+. ++..+.+ ..|.++|+.+++...- . ...+......|+|||+.++.... +..|.++|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl 264 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-A---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDT 264 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-e---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 6778999999985 5544433 4689999988744332 1 22334567789999988775433 357888898
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
.++....+.... .......|+|||+.|+..+.. + .|.+.|+.+++..+... .... ..
T Consensus 265 ~~g~~~~LT~~~-----------------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~ 324 (419)
T PRK04043 265 NTKTLTQITNYP-----------------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NS 324 (419)
T ss_pred CCCcEEEcccCC-----------------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--Cc
Confidence 887654443211 112345799999988766643 2 58888998876533322 1111 24
Q ss_pred EEeCCCCCEEEEEeCC---------CeEEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421 276 CFGDESGHLIYSGSDD---------NLCKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~d---------g~i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.|+ |+|+.|+..+.. ..|.+.|+.... .. .......|+|||+.|+..+
T Consensus 325 ~~S-PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 325 SVS-TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred eEC-CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEE
Confidence 899 999988776643 257777765321 21 2334689999999888764
No 255
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.19 E-value=4.2e-10 Score=97.40 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=109.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe---EEEEECCCCc
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVDVGSGT 202 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~ 202 (372)
.+..+..++.+++||++..+....++++.......+...........+++.|..+......+...|. +.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3445567888999999888888777777654321111111122223455666555555555544444 4455444343
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeCCC
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDES 281 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~ 281 (372)
..... ||-+-++.++|+||+++|+++..|..|++-.......+..+. +|..-|..++.- +
T Consensus 144 ~~~~l-----------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~ 204 (390)
T KOG3914|consen 144 CEPIL-----------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--D 204 (390)
T ss_pred cchhh-----------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--c
Confidence 32222 688899999999999999999999999998877655555554 799999999996 5
Q ss_pred CCEEEEEeCCCeEEEEecccc
Q 017421 282 GHLIYSGSDDNLCKVNSVLLL 302 (372)
Q Consensus 282 ~~~l~s~~~dg~i~vwd~~~~ 302 (372)
+..|+++|.|++|++||+++.
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred CceeeecCCCCcEEEEecccC
Confidence 667999999999999999743
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=3.8e-09 Score=98.19 Aligned_cols=180 Identities=15% Similarity=0.110 Sum_probs=108.1
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeC-CC----cEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEe-
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQ-AS----QIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYAS- 188 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg----~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 188 (372)
...+....+.....+|||||+.|+..+. +| .+.+|++..+. ..... ............|+|||+.|+..+
T Consensus 223 ~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 223 GKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred ceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCEEEEEEC
Confidence 3444555666677899999998886553 22 33446665421 11221 112222346789999999888766
Q ss_pred CCCeEEEE--ECCC--CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeE
Q 017421 189 MSPIVHIV--DVGS--GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKL 261 (372)
Q Consensus 189 ~dg~i~vw--d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~ 261 (372)
.+|...+| ++.. +....+.. +...+....|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~-----------------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTK-----------------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred CCCCceEEEEECcccccceEEecc-----------------CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 35644444 4432 11111110 11245678999999998866543 4699999998876
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccccc-----CCCCCeeEEEeccC
Q 017421 262 SLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLLLT-----RSINPCNKYLFNPC 317 (372)
Q Consensus 262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~~~-----~~~~~v~~~~~s~~ 317 (372)
. .+......+....|+ |||+.|+.... ...|.++|+.... .....+...+|+|-
T Consensus 364 ~-~Lt~~~~~~~~p~wS-pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 Y-QLTTSPENKESPSWA-IDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred E-EccCCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 4 333334466789999 89988775433 3457788875321 23334556677764
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.8e-09 Score=96.82 Aligned_cols=173 Identities=20% Similarity=0.181 Sum_probs=111.6
Q ss_pred cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (372)
Q Consensus 147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
.|.++|...+.. .. ...+...+....|+|||+.|+..+.+ ..|.+||+.++....+....
T Consensus 180 ~l~~~d~~g~~~-~~---l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~------------- 242 (430)
T PRK00178 180 TLQRSDYDGARA-VT---LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE------------- 242 (430)
T ss_pred EEEEECCCCCCc-eE---EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-------------
Confidence 477788775432 22 22344568899999999999877643 46999999988754433211
Q ss_pred CCccccEEEEEEcCCCCEEEE-EeCCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CC--eEEEE
Q 017421 224 GGYSFGIFSLKFSTDGRELVA-GSSDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DN--LCKVN 297 (372)
Q Consensus 224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg--~i~vw 297 (372)
..+....|+|||+.|+. .+.++ .|++||+.+++. ..+..+........|+ |+|+.|+..+. ++ .|.++
T Consensus 243 ----g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 243 ----GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEE
Confidence 13446899999998874 44444 688899998765 3455555566778999 88887766553 34 46666
Q ss_pred eccccc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 298 SVLLLT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 298 d~~~~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
|+.... ..........|+|+|+.|+...... . ...|.+||+.+++
T Consensus 317 d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~--~~~l~~~dl~tg~ 366 (430)
T PRK00178 317 NVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD-G--NFHVAAQDLQRGS 366 (430)
T ss_pred ECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC-C--ceEEEEEECCCCC
Confidence 764321 1122334678999999988764211 0 1246677776654
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=3.7e-10 Score=113.65 Aligned_cols=212 Identities=10% Similarity=0.114 Sum_probs=154.4
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+..+-..|.++.=+|...+.++|+.||.+++|....+..+........ ..|+.+.|+.+|+.+..+..||.+.+|.
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecc
Confidence 34555667888888899999999999999999999988877766444333 6899999999999999999999999999
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---CCCeEEEEECCCC---eEEEEeecCCCC
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLEAN---KLSLRILAHTSD 271 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~dg~i~iwd~~~~---~~~~~~~~~~~~ 271 (372)
+..... .. .. -|........|-. ..+++++ .++.+.+||.... ..+. ..|.+.
T Consensus 2280 ~~pk~~-~s---~q-------------chnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~g 2338 (2439)
T KOG1064|consen 2280 ASPKPY-TS---WQ-------------CHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGG 2338 (2439)
T ss_pred cCCcce-ec---cc-------------cCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCC
Confidence 872211 11 11 2555677777764 4566543 4678999997532 2333 679999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 272 VNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
++++++- |..++|++|+.+|.|++||++.-+ .|.-+. +. ...+++.+. -.|++++|++..-..+++|
T Consensus 2339 aT~l~~~-P~~qllisggr~G~v~l~D~rqrql~h~~~~----~~-~~~~f~~~s------s~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2339 ATVLAYA-PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----LD-TREYFVTGS------SEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred ceEEEEc-CcceEEEecCCcCcEEEeehHHHHHHHHhhh----hh-hhheeeccC------cccceEEEEccccchhhcC
Confidence 9999999 999999999999999999998322 222222 44 445666664 4789999999888777776
Q ss_pred eeeEEEeeecccCC
Q 017421 351 MVHILFSGYLHNDH 364 (372)
Q Consensus 351 ~~h~~~~~~~~~~~ 364 (372)
..--.=.|++.+.+
T Consensus 2407 p~e~ak~gfFr~~g 2420 (2439)
T KOG1064|consen 2407 PSEHAKQGFFRNIG 2420 (2439)
T ss_pred chhhcccchhhhcC
Confidence 54333345555544
No 259
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.9e-09 Score=95.43 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=168.3
Q ss_pred ccCCceeEeeeeeCCCCCccc-cCCCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE
Q 017421 100 SAADCCHMLSRYLPVNGPWPV-DQTTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS 176 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 176 (372)
++.+..+++|+|........+ .+|...|.--.|-|. .+-+++++.||++++=.+..............|.++|.-++
T Consensus 160 gSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhkla 239 (559)
T KOG1334|consen 160 GSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLA 239 (559)
T ss_pred cCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceee
Confidence 555567889999988776665 479999988889883 45689999999999988765545554555778888999999
Q ss_pred ECCCC-CEEEEEeCCCeEEEEECCCCceeeecceeecccc-------cceeccC--------------------------
Q 017421 177 LSPDQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG-------LDFSAAD-------------------------- 222 (372)
Q Consensus 177 ~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~-------------------------- 222 (372)
.-|+. ..|.+++.|+.+.-.|++.+.............. +...|..
T Consensus 240 v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~ 319 (559)
T KOG1334|consen 240 VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN 319 (559)
T ss_pred ecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc
Confidence 99954 5588899999999999877654322221111111 0011100
Q ss_pred -----------C-CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C----------eEEE-EeecCCC--CeEEE
Q 017421 223 -----------D-GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA--N----------KLSL-RILAHTS--DVNTV 275 (372)
Q Consensus 223 -----------~-~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~--~----------~~~~-~~~~~~~--~v~~~ 275 (372)
. ......|++++|+.++.-|.++..|-.|++|.-.- | ..+. .+++|.. .|..+
T Consensus 320 n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 320 NGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred cchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 0 12235789999998888788888888899995332 2 1222 2667754 57788
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEeccc------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVLL------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
.|-.|...++++|+.-|.|-||+-.+ +.+...-|+++.=+|--..||++. -|..|+||--
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP 465 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTP 465 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecC
Confidence 88778899999999999999999763 334445889999899888888774 3777888865
No 260
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=1.2e-07 Score=84.52 Aligned_cols=211 Identities=16% Similarity=0.137 Sum_probs=136.5
Q ss_pred ECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeeccc-C---CcceEEEEECCCCCEEEEEeC--CCeEEE
Q 017421 132 FSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKS-L---RWTVTDTSLSPDQRHLVYASM--SPIVHI 195 (372)
Q Consensus 132 ~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~--dg~i~v 195 (372)
++||++.|.++.. +..|.|||+.+.+.+..+..... . ......++++|||+++++... +..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998876654 78999999999877766543222 0 123457899999999998763 688999
Q ss_pred EECCCCceeeecceeecccccce--------eccC--------CCCccccEEEE--------------EEcC-CCCEEEE
Q 017421 196 VDVGSGTMESLANVTEIHDGLDF--------SAAD--------DGGYSFGIFSL--------------KFST-DGRELVA 244 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~--------~~~~--------~~~h~~~i~~~--------------~~sp-~~~~l~s 244 (372)
.|+.+++................ ..+. ..|. ...... .|.+ +|+++..
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 99999887654443221111000 0000 0010 011111 2234 7877777
Q ss_pred EeCCCeEEEEECCCC-----eEEEEeec-------CCCCeEEEEEeCCCCCEEEEEe----------CCCeEEEEecccc
Q 017421 245 GSSDDCIYVYDLEAN-----KLSLRILA-------HTSDVNTVCFGDESGHLIYSGS----------DDNLCKVNSVLLL 302 (372)
Q Consensus 245 ~s~dg~i~iwd~~~~-----~~~~~~~~-------~~~~v~~~~~sp~~~~~l~s~~----------~dg~i~vwd~~~~ 302 (372)
... |+|.+.|+... .....+.. ..+...-++++ ++++.+++.. ..+.|.++|..+.
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~-~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH-RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc-CCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 665 99999996443 22222211 22344459999 8887777642 1257999998755
Q ss_pred c-----CCCCCeeEEEeccCCC-eEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 303 T-----RSINPCNKYLFNPCNK-YLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 303 ~-----~~~~~v~~~~~s~~g~-~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+ .....+..++++|||+ +|++... -++.|.+.|..+++.+++.
T Consensus 290 kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 290 KRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEEECcCCeEEeee
Confidence 4 3456889999999999 7776631 2677899999999998876
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.6e-09 Score=92.07 Aligned_cols=172 Identities=16% Similarity=0.226 Sum_probs=119.7
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-----cceEEEEECC-CCCEEEEEeCCCeEE
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSP-DQRHLVYASMSPIVH 194 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~~~l~~~~~dg~i~ 194 (372)
..|+-.|+++.++.|+..++++. |-.|-+|+++-........-.+++. .-|++..|+| ..+.++..+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 56899999999999999888865 5789999998543333333333332 3588999999 566788888999999
Q ss_pred EEECCCCce-eeecceeecccccceeccCCC---CccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeecCC
Q 017421 195 IVDVGSGTM-ESLANVTEIHDGLDFSAADDG---GYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-ANKLSLRILAHT 269 (372)
Q Consensus 195 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~ 269 (372)
+.|++.... .....+.+..+. |.+.. +--..|..+.|+++|+++++-+. -+|++||+. ..+++.+++-|.
T Consensus 240 LcDmR~~aLCd~hsKlfEeped----p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPED----PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred EeechhhhhhcchhhhhccccC----CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence 999985432 111111111000 00000 11246888999999999988653 789999994 455666666552
Q ss_pred ------------CCe---EEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 270 ------------SDV---NTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 270 ------------~~v---~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
..| ..++|+ .++..++||+..+.++++++
T Consensus 315 ~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 315 YLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecC
Confidence 122 357899 88999999999999999995
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.10 E-value=5.4e-09 Score=94.81 Aligned_cols=144 Identities=20% Similarity=0.182 Sum_probs=119.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccccc
Q 017421 137 SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGL 216 (372)
Q Consensus 137 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 216 (372)
..++-|...|.|.+|++..++...+ .....|.++|.++.++.+-..|.+++.|+.+..|+.......+....
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~------- 142 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE------- 142 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-------
Confidence 4577788899999999998855444 44567888999999999999999999999999999998877655542
Q ss_pred ceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCC-----CCEEEEE-eC
Q 017421 217 DFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDES-----GHLIYSG-SD 290 (372)
Q Consensus 217 ~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~~l~s~-~~ 290 (372)
....+.+++.+|||..+++++ ++|++||+++++.+..+.+|.++|.++.|. .+ |.++.++ ..
T Consensus 143 ---------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~-~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 143 ---------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFT-TLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ---------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEE-Eeccccccceeeecccc
Confidence 223688999999999999886 889999999999999999999999999997 55 5665554 45
Q ss_pred CCeEEEEecc
Q 017421 291 DNLCKVNSVL 300 (372)
Q Consensus 291 dg~i~vwd~~ 300 (372)
+.-+.+|-++
T Consensus 211 ~r~i~~w~v~ 220 (541)
T KOG4547|consen 211 ERGITVWVVE 220 (541)
T ss_pred ccceeEEEEE
Confidence 5668888775
No 263
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=2.3e-08 Score=97.83 Aligned_cols=188 Identities=14% Similarity=0.057 Sum_probs=129.5
Q ss_pred ccCCceeEeeeeeCCCCC-------ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEE--E-eeeccc
Q 017421 100 SAADCCHMLSRYLPVNGP-------WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG--WKIQ--K-DILAKS 167 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~--~-~~~~~~ 167 (372)
.+.|..+++|+....... ........++.++...++++.+|+++.||.|.+.+++.. .... . ......
T Consensus 1067 gS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1067 GSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred ecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 556677889998765443 122335788999999999999999999999999998762 1110 1 111111
Q ss_pred CCcce-EEEEECC-CCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 168 LRWTV-TDTSLSP-DQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 168 ~~~~v-~~~~~~~-~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
..+.+ ..-+|.. .+. .++.+..-+.|..||+++.......+... ..+.|++++.+|.+++++.
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~--------------~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL--------------RHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--------------cccceeEEEecCCceEEEE
Confidence 12223 3333433 333 68888889999999998765433332221 2248999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEeCCCC--CEEEEEe--CCCeEEEEeccc
Q 017421 245 GSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFGDESG--HLIYSGS--DDNLCKVNSVLL 301 (372)
Q Consensus 245 ~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~~l~s~~--~dg~i~vwd~~~ 301 (372)
|+..|.+.+||++-+.++..+. .+..++..+..+|--+ ...++++ ..+.|.+|++.+
T Consensus 1213 Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1213 GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 9999999999999888777765 3446788877774333 4555554 467899999863
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=1.7e-08 Score=94.58 Aligned_cols=156 Identities=21% Similarity=0.166 Sum_probs=101.7
Q ss_pred cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---CeEEEEECCCCceeeecceeecccccceeccCC
Q 017421 147 QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADD 223 (372)
Q Consensus 147 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (372)
.|.++|...... .. .......+....|+|||+.|+..+.+ ..|++||+.+++...+....
T Consensus 199 ~l~i~d~dG~~~-~~---l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~------------- 261 (448)
T PRK04792 199 QLMIADYDGYNE-QM---LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP------------- 261 (448)
T ss_pred EEEEEeCCCCCc-eE---eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-------------
Confidence 577777655422 22 22334478899999999999877543 36899999887654332211
Q ss_pred CCccccEEEEEEcCCCCEEEE-EeCCCe--EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEE
Q 017421 224 GGYSFGIFSLKFSTDGRELVA-GSSDDC--IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD-DNL--CKVN 297 (372)
Q Consensus 224 ~~h~~~i~~~~~sp~~~~l~s-~s~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vw 297 (372)
.......|+|||+.|+. .+.++. |.++|+.+++. ..+..+.......+|+ |||+.|+..+. ++. |.++
T Consensus 262 ----g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~ 335 (448)
T PRK04792 262 ----GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRV 335 (448)
T ss_pred ----CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEE
Confidence 12346789999998865 455564 88889987764 3445455566788999 89988776553 444 5555
Q ss_pred eccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421 298 SVLLLT-----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 298 d~~~~~-----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
|+.... .........+|+|||++|+...
T Consensus 336 dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 336 NLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 654221 1222334679999999988764
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=1.3e-07 Score=96.93 Aligned_cols=211 Identities=11% Similarity=0.050 Sum_probs=133.9
Q ss_pred ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeeec-------ccC-------CcceEEEEECC-CCCEEEEEeC
Q 017421 126 RAYVSQFSADGSLFVAGF-QASQIRIYDVERGWKIQKDILA-------KSL-------RWTVTDTSLSP-DQRHLVYASM 189 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~-------~~~v~~~~~~~-~~~~l~~~~~ 189 (372)
...+++++++++.|.++. ..+.|+++|+.++. +..+... .+. -.....++++| ++..+++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 468899999888665554 45679999987763 2221100 000 11356899999 5666667677
Q ss_pred CCeEEEEECCCCceeeecceeecccccceeccC-CCCccccEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeEEEEeec
Q 017421 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAAD-DGGYSFGIFSLKFSTDGREL-VAGSSDDCIYVYDLEANKLSLRILA 267 (372)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~~~~sp~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~ 267 (372)
++.|++||..++....... ..... ...... ..........|+++|+++.| ++-+.++.|++||+.++.......+
T Consensus 704 ~~~I~v~d~~~g~v~~~~G--~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg 780 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSG--DGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGG 780 (1057)
T ss_pred CCeEEEEECCCCeEEEEec--CCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 8999999998775432110 00000 000000 00112356789999999844 5556678999999987653211100
Q ss_pred ---------------------CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----C--------------CCC
Q 017421 268 ---------------------HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT-----R--------------SIN 307 (372)
Q Consensus 268 ---------------------~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~-----~--------------~~~ 307 (372)
.-.....++++ ++|+++++-..++.|++||..+.. + .-.
T Consensus 781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred ccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 01134688998 899988888899999999986321 1 112
Q ss_pred CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
....++++++|+.+++-+ .++.|++||..+++..
T Consensus 860 ~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 860 EPAGLALGENGRLFVADT------NNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CceEEEEeCCCCEEEEEC------CCCEEEEEECCCCccc
Confidence 567899999998666544 5789999999988753
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=3.5e-09 Score=98.01 Aligned_cols=188 Identities=7% Similarity=0.058 Sum_probs=126.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------------EEEeeecccCCcceEEEEECCCCCEEEEEeCCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWK------------IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP 191 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 191 (372)
.....|+.|+.+..++++|+.||.++|..+.+... +.....+.+|...|.-+.|+.+.+.|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 45678999999999999999999999998875311 111233568999999999999999999999999
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---------E
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---------S 262 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~---------~ 262 (372)
.|.||-+-.+......... ...+-|.+++|+.||..|+....||.|.+=.++..+. +
T Consensus 94 lIiVWmlykgsW~EEMiNn--------------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l 159 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINN--------------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLL 159 (1189)
T ss_pred eEEEEeeecccHHHHHhhC--------------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhec
Confidence 9999998777642222111 1234789999999999998888888766544332110 0
Q ss_pred E---------------------Ee----------------------ecCCCCeEEEEEe-------CCCCCEEEEEeCCC
Q 017421 263 L---------------------RI----------------------LAHTSDVNTVCFG-------DESGHLIYSGSDDN 292 (372)
Q Consensus 263 ~---------------------~~----------------------~~~~~~v~~~~~s-------p~~~~~l~s~~~dg 292 (372)
. .. ......|..+.|. ||+...|+++-.+|
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 0 00 0001123334443 46666777777777
Q ss_pred eEEEEeccc-----ccCCCCCeeEEEeccCCCeEEEEe
Q 017421 293 LCKVNSVLL-----LTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 293 ~i~vwd~~~-----~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.+.+-.-.. +-...-.+..+.|+++|..|+++.
T Consensus 240 r~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred eehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence 766643221 112234568889999999999874
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=2.3e-08 Score=89.35 Aligned_cols=221 Identities=15% Similarity=0.123 Sum_probs=140.6
Q ss_pred CCccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC----
Q 017421 116 GPWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---- 191 (372)
Q Consensus 116 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---- 191 (372)
....+....-++..++|||.|.+|++.... .|.+|.-.....+.. ..|. .|..+.|+|.+++|.+-+..+
T Consensus 24 ~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~----~~~~-~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 24 IHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVR----FRHP-DVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred ccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheee----eecC-CceecccCcccceeeeeccCCccCh
Confidence 334444467788999999999999987764 589999877654333 1233 489999999999999866543
Q ss_pred -----------eEEEEECCCCceeeecceeecc-cc---c----------------------------------------
Q 017421 192 -----------IVHIVDVGSGTMESLANVTEIH-DG---L---------------------------------------- 216 (372)
Q Consensus 192 -----------~i~vwd~~~~~~~~~~~~~~~~-~~---~---------------------------------------- 216 (372)
.+.+||+.++............ .+ +
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~ 177 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGIL 177 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcccccee
Confidence 4899999888765433211110 00 0
Q ss_pred --ceeccCC-----------------------------------------------------------------------
Q 017421 217 --DFSAADD----------------------------------------------------------------------- 223 (372)
Q Consensus 217 --~~~~~~~----------------------------------------------------------------------- 223 (372)
.++|...
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnL 257 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNL 257 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceE
Confidence 1111100
Q ss_pred -------------CCccccEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 017421 224 -------------GGYSFGIFSLKFSTDGRELVA--GSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSG 288 (372)
Q Consensus 224 -------------~~h~~~i~~~~~sp~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~ 288 (372)
.+-.++|...+|.|.++.+++ |..+..+.++|++.. ....+ ....-..+.|+ |.+++++.+
T Consensus 258 yl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fs-p~~r~il~a 333 (561)
T COG5354 258 YLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFS-PHERYILFA 333 (561)
T ss_pred EEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCccccccccc-CcccEEEEe
Confidence 012456666667666655543 334556666766644 32222 23344567788 899999988
Q ss_pred eCC---CeEEEEeccc-c----cCCCCCeeEEEeccCCCeEEEEeeee-EEEeeceEEEeecccceEE
Q 017421 289 SDD---NLCKVNSVLL-L----TRSINPCNKYLFNPCNKYLIIYLILV-ISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 289 ~~d---g~i~vwd~~~-~----~~~~~~v~~~~~s~~g~~l~~~~~~~-~~~~d~~i~lw~~~~~~~~ 347 (372)
+.| |.+-+||... + .-.....+-+.|+|||+++.+....- .+. |+.++||++......
T Consensus 334 gF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~-Dn~i~l~~v~g~~~f 400 (561)
T COG5354 334 GFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRV-DNSIKLWDVYGAKVF 400 (561)
T ss_pred cCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccccc-CcceEEEEecCchhh
Confidence 765 6799999751 1 12334456678999999998874333 344 899999998765443
No 268
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=1.3e-07 Score=79.04 Aligned_cols=206 Identities=18% Similarity=0.187 Sum_probs=115.2
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421 129 VSQFSADGSLFVAGFQASQIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESL 206 (372)
Q Consensus 129 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (372)
.++.+.+|++||+. .|..|.|-....+ ..+.+....+...-.-.-++|+||+..||.+...|.|+++|+.......+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 35678899987764 5677887776543 12222222333222457899999999999999999999999875432211
Q ss_pred ccee-------ecccccceeccCC---------------------------------------CCccccEEEEEEcCCCC
Q 017421 207 ANVT-------EIHDGLDFSAADD---------------------------------------GGYSFGIFSLKFSTDGR 240 (372)
Q Consensus 207 ~~~~-------~~~~~~~~~~~~~---------------------------------------~~h~~~i~~~~~sp~~~ 240 (372)
.... ....++.|..... ..+...|+++.++|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 1100 0011111111100 12345778888888877
Q ss_pred EEEEEeCCCe-----------EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc---ccCCC
Q 017421 241 ELVAGSSDDC-----------IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL---LTRSI 306 (372)
Q Consensus 241 ~l~s~s~dg~-----------i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~---~~~~~ 306 (372)
+|++|+.... +..|.+-++.+... ...+ .+...-......+..++-.++. .....
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk----------~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK----------QVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEE----------Eccc-cCccccccccccceeeccceeeeeccccCC
Confidence 7776654221 22222222211111 0011 1111111111122222222221 12456
Q ss_pred CCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 307 NPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 307 ~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
..|..|..||||+.|++.. .+|.|.||++.+.+..+.+.-
T Consensus 230 d~i~kmSlSPdg~~La~ih------~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIH------FSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CceEEEEECCCCCEEEEEE------cCCeEEEEecCcchhhcccch
Confidence 7899999999999999886 689999999999888777654
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=3.1e-08 Score=91.96 Aligned_cols=211 Identities=10% Similarity=0.067 Sum_probs=142.5
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
..+.+|.+.|..+.|+.+.+.|-+...+|.|.||-+..+.-....+ ....++.|.+++|+.||..|+....||.|.|=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMi-NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMI-NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHh-hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 4678999999999999999999999999999999998874333222 334456799999999999999999999887766
Q ss_pred CCCCceeeecceeecccccceeccCC------------------------------------CCccccEEEEEEc-----
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADD------------------------------------GGYSFGIFSLKFS----- 236 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~h~~~i~~~~~s----- 236 (372)
++..+.-..........++.++++.. ......|-.+.|.
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 65443211100000000111111100 0011124445553
Q ss_pred ---CCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---------CeEEEEec-----
Q 017421 237 ---TDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---------NLCKVNSV----- 299 (372)
Q Consensus 237 ---p~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---------g~i~vwd~----- 299 (372)
||...|+++..+|.+.+-.-.+......+. ..-.+....|+ ++|..|++++.+ +.|++|..
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWn-h~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~ 301 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWN-HNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIV 301 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceec-CCCcEEEEccCcccccCccccceEEEeccchhhe
Confidence 466678888888887776544433222232 23567889999 999999998764 36777764
Q ss_pred ccccCCCCCeeEEEeccCCCeEEEEeeeeEEE
Q 017421 300 LLLTRSINPCNKYLFNPCNKYLIIYLILVISI 331 (372)
Q Consensus 300 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~ 331 (372)
.+++.....|++++|--.|-.++.+.++++.+
T Consensus 302 gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 302 GTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred EEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 36777888999999999999999888777655
No 270
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.95 E-value=5.9e-09 Score=96.86 Aligned_cols=234 Identities=18% Similarity=0.169 Sum_probs=158.0
Q ss_pred eEeeeeeCCCCCccccC-CCCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC-
Q 017421 106 HMLSRYLPVNGPWPVDQ-TTSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ- 181 (372)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~- 181 (372)
+++--..|...+..+.. .+-.|-.+.|+|. ..+-++......-.||++.....-.......+|...|+.+.|+|+.
T Consensus 48 ~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~p 127 (1081)
T KOG0309|consen 48 YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHP 127 (1081)
T ss_pred EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCC
Confidence 33333344444444433 2334777888874 3455555555667789987543333344577888899999999954
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-e
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-K 260 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~ 260 (372)
..+++++.|-.+..||+++...... . ... -......++|+.....+.+.+....|.+||++.| .
T Consensus 128 dVlatcsvdt~vh~wd~rSp~~p~y-s-~~~-------------w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 128 DVLATCSVDTYVHAWDMRSPHRPFY-S-TSS-------------WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred cceeeccccccceeeeccCCCccee-e-eec-------------ccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 5678889999999999987653111 1 111 1135678899875544555566678999999876 4
Q ss_pred EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-------cCCCCCeeEEEeccCCCeEEEE---eeeeEE
Q 017421 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-------TRSINPCNKYLFNPCNKYLIIY---LILVIS 330 (372)
Q Consensus 261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~v~~~~~s~~g~~l~~~---~~~~~~ 330 (372)
++..+++|...|+.+.|.......+.+++.|++|++||...- .....+|+...+-|-|.-.++- .+..+-
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~ 272 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVP 272 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeee
Confidence 778888999999999997455667889999999999998632 1345677777888866533322 222333
Q ss_pred Ee--eceEEEeecccc-eEEEEEeeeE
Q 017421 331 IY--SPNILLDNYFLL-RTFYSFMVHI 354 (372)
Q Consensus 331 ~~--d~~i~lw~~~~~-~~~~~~~~h~ 354 (372)
++ +.....|++.++ +++..|.||.
T Consensus 273 ~~~c~n~d~e~n~~~~~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 273 QLRCENSDLEWNVFDLNTPVHTFVGHD 299 (1081)
T ss_pred eccccchhhhhccccCCcceeeecCcc
Confidence 33 356678988776 5799999995
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.94 E-value=4.9e-08 Score=83.19 Aligned_cols=208 Identities=12% Similarity=0.095 Sum_probs=140.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
..+.||...|+....-|-..-+++.+.|.+++||--.+ ++..+. .....+.+++++.+.++...|++|-..|++.-+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps--I~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS--IYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch--hhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 34678888888888888777799999999999996443 333222 223345579999999999999999999999888
Q ss_pred ECCCCceeeec-ceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-------------------------------
Q 017421 197 DVGSGTMESLA-NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA------------------------------- 244 (372)
Q Consensus 197 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s------------------------------- 244 (372)
.+...-..... +... .|...+..+-|+-...++++
T Consensus 96 s~sedfnkm~~~r~~~-------------~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~ 162 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYL-------------AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ 162 (404)
T ss_pred Ehhhhhhhcchhhhhh-------------hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence 76432111000 0000 12223333333322222222
Q ss_pred --------EeCCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCC
Q 017421 245 --------GSSDDCIYVYDL--EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSIN 307 (372)
Q Consensus 245 --------~s~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~ 307 (372)
|...|.|.+-.+ ..-..+.++.+|.+.+++++|. +...+|++|..|..+.+||+. .+.+|..
T Consensus 163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 223333333322 2234566778999999999999 888999999999999999986 3447888
Q ss_pred CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
.|..+...+--+.+.++. -|+.|.+|+....+..
T Consensus 242 kV~~l~~~~~t~~l~S~~------edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 242 KVQALSYAQHTRQLISCG------EDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhhhhhhhhheeeeecc------CCCeEEEEeccceeec
Confidence 888888877777777664 5888999988876643
No 272
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=1.2e-08 Score=88.58 Aligned_cols=173 Identities=11% Similarity=0.016 Sum_probs=117.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-- 248 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-- 248 (372)
.+..+..++++++++++..+....++++..... ...+..... -...-+.+.|..+......+..-
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~-----------v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSC-----------VPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEee-----------cccCcceeeeeeccceEEEEeecCC
Confidence 355667788899999998888877777765442 011100000 00123344444444444444333
Q ss_pred -CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------c-ccCCCCCeeEEEeccCCCe
Q 017421 249 -DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------L-LTRSINPCNKYLFNPCNKY 320 (372)
Q Consensus 249 -g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~-~~~~~~~v~~~~~s~~g~~ 320 (372)
..+.+|....+.+ ..+-+|-..++.++|+ ||+++|+++..|..|++-... + .-+|..-|..++.-++..
T Consensus 131 ~~~~di~s~~~~~~-~~~lGhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~- 207 (390)
T KOG3914|consen 131 VYSFDILSADSGRC-EPILGHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL- 207 (390)
T ss_pred ceeeeeecccccCc-chhhhhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-
Confidence 4455665555444 3445899999999999 999999999999999997665 2 227999999999988754
Q ss_pred EEEEeeeeEEEeeceEEEeecccceEEEEEeeeEEEeeecccCCc
Q 017421 321 LIIYLILVISIYSPNILLDNYFLLRTFYSFMVHILFSGYLHNDHN 365 (372)
Q Consensus 321 l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~~~~~~~~~~~ 365 (372)
|++++ =|+++++||+.+|+.+..+..-.++.-|++...+
T Consensus 208 LlS~s------GD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~ 246 (390)
T KOG3914|consen 208 LLSGS------GDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPP 246 (390)
T ss_pred eeecC------CCCcEEEEecccCCcccccchhHhhhhccccCch
Confidence 55543 3999999999999999888777777777765543
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=2.5e-07 Score=82.17 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=117.9
Q ss_pred CccccCCCCceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEE
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 195 (372)
....-+|.+.|.-..+..+++-++.|..|| .+-|||..+++... ..+.-+.|.++..+|+|++++.+.....+.+
T Consensus 352 ~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr----~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 352 YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR----IEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE----eeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 334457888899999999888999999999 89999999884333 2233347999999999999999999999999
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeEEEEeecCCCC
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANKLSLRILAHTSD 271 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~ 271 (372)
.|+.++....+-+.. .+-|+.++|||++++||-+--+| .|+++|+..++.... +.....
T Consensus 428 ididngnv~~idkS~----------------~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~ta~ 490 (668)
T COG4946 428 IDIDNGNVRLIDKSE----------------YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPTAY 490 (668)
T ss_pred EEecCCCeeEecccc----------------cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCccc
Confidence 999999875544422 23799999999999999876655 699999998876443 334444
Q ss_pred eEEEEEeCCCCCEEEEEe
Q 017421 272 VNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~ 289 (372)
=.+-+|. |++++|..-+
T Consensus 491 DfsPaFD-~d~ryLYfLs 507 (668)
T COG4946 491 DFSPAFD-PDGRYLYFLS 507 (668)
T ss_pred ccCcccC-CCCcEEEEEe
Confidence 4677888 8999877554
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.6e-07 Score=83.54 Aligned_cols=197 Identities=14% Similarity=0.162 Sum_probs=122.9
Q ss_pred CceEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421 125 SRAYVSQFSADGSLFVAGFQ-----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 193 (372)
..|.-+.|||+.++|++-+. ...++|||+.+|...............-.-+.||.|++++|....+ .|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 35788999999999998542 2579999999997766654432222222346899999999987764 56
Q ss_pred EEEECCCCceeeecce-eecccccceeccC--------------------------------------------------
Q 017421 194 HIVDVGSGTMESLANV-TEIHDGLDFSAAD-------------------------------------------------- 222 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~-------------------------------------------------- 222 (372)
.||+...-.......+ .....+..++|..
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 6776533211100000 0011111111110
Q ss_pred --------CC------------------------CccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCC----eEEE
Q 017421 223 --------DG------------------------GYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEAN----KLSL 263 (372)
Q Consensus 223 --------~~------------------------~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~----~~~~ 263 (372)
.. .-...|...+|-|.|+.+++-+.+ .++.+|-+++. +.+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 00 123456667888988877655433 46888877632 2233
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccc--cc----CCCCCeeEEEeccCCCeEEEEe
Q 017421 264 RILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLL--LT----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 264 ~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~--~~----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.+.. ...+.+.|+ |.|++++.+. ..|.+.++|+.. .+ ......+.+.|.|.|+++++++
T Consensus 489 ~~dk--~~~N~vfws-PkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 489 ELDK--KFANTVFWS-PKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred hhcc--cccceEEEc-CCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEee
Confidence 3332 456789999 9999988764 578899999872 11 2234568899999999999884
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.89 E-value=6.8e-09 Score=104.91 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=130.2
Q ss_pred ccCCceeEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC
Q 017421 100 SAADCCHMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS 178 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 178 (372)
+++|..+++|.+-.......++. -+..|+.+.|+.+|+.+.++..||.+.+|..... .......|......+.|-
T Consensus 2226 gs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk----~~~s~qchnk~~~Df~Fi 2301 (2439)
T KOG1064|consen 2226 GSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK----PYTSWQCHNKALSDFRFI 2301 (2439)
T ss_pred cCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc----ceeccccCCccccceeee
Confidence 55566677777766665544432 2388999999999999999999999999998743 223355666667777776
Q ss_pred CCCCEEEEEeC---CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421 179 PDQRHLVYASM---SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (372)
Q Consensus 179 ~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd 255 (372)
. ..+++++. ++.+.+||..-........ . .|...++++++-|..++|++|+.+|.|++||
T Consensus 2302 ~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-------------~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2302 G--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-------------CHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred e--hhhhccccCCCCCcccchhcccCcccceee--e-------------ecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 4 55666543 6789999976544332222 2 3667999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc
Q 017421 256 LEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL 302 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~ 302 (372)
++..+.+++++. + ....+|++|+..|.|+||++...
T Consensus 2365 ~rqrql~h~~~~---------~--~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------L--DTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred hHHHHHHHHhhh---------h--hhhheeeccCcccceEEEEcccc
Confidence 999888777664 3 25679999999999999999743
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.89 E-value=7.3e-07 Score=73.76 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=111.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE-ECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS-LSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
...||.|+..|...+|...+.+....... .+...|+-+. .......+..++.|.++++.+++.+..........
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec--ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc---
Confidence 35688998999999999986543332111 1111111111 11112336667788888888887665432222110
Q ss_pred ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEE-EeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSL-RILAHTSDVNTVCFGDESGHLIYSGSDD 291 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~~~~~v~~~~~sp~~~~~l~s~~~d 291 (372)
-..+++++++|++++++.+....|..|.+.... .+. .....+..-.+..|+ .....+|++..|
T Consensus 159 -------------~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s-~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 159 -------------LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS-ENDLQFAVVFQD 224 (344)
T ss_pred -------------cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec-cCcceEEEEecC
Confidence 137889999999999999988999999987542 222 222334455688999 888999999999
Q ss_pred CeEEEEecccc-----------cCCCCCeeEEEeccCCC
Q 017421 292 NLCKVNSVLLL-----------TRSINPCNKYLFNPCNK 319 (372)
Q Consensus 292 g~i~vwd~~~~-----------~~~~~~v~~~~~s~~g~ 319 (372)
|++.|||+|.+ ..|.+.+..+.|++.|.
T Consensus 225 g~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99999999832 26888999999998764
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.87 E-value=7.4e-07 Score=89.87 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=132.7
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEE----eCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIY----DVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
...+.|.++.+-++...++.+..+|.|.+. +........ .......|.+++||||+..|+..+.++++.+..
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 554442211 223334699999999999999999999888764
Q ss_pred CCCCceeeecceee-------------cccccceeccC----------------CCC---ccccEEEEEEcCCCCEEEEE
Q 017421 198 VGSGTMESLANVTE-------------IHDGLDFSAAD----------------DGG---YSFGIFSLKFSTDGRELVAG 245 (372)
Q Consensus 198 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~----------------~~~---h~~~i~~~~~sp~~~~l~s~ 245 (372)
- .........+.. +.....|.+.. +.+ +...-..|+|-.||.++|+.
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEE
Confidence 2 111111110000 00000110000 001 23356789999999999987
Q ss_pred eC---C---CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEeccc-------c--cCCCC
Q 017421 246 SS---D---DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSVLL-------L--TRSIN 307 (372)
Q Consensus 246 s~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~~~-------~--~~~~~ 307 (372)
+. . ..++||+-+ |....+-..-.+--.+++|- |.|++||+.-. ...|.+|...- + .....
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCc
Confidence 74 2 469999866 66544433333334578999 99999998764 35577777541 1 13456
Q ss_pred CeeEEEeccCCCeEEEEeeeeEEEe
Q 017421 308 PCNKYLFNPCNKYLIIYLILVISIY 332 (372)
Q Consensus 308 ~v~~~~~s~~g~~l~~~~~~~~~~~ 332 (372)
.|..+.|++|+..||+.....+.+|
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLW 330 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLW 330 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEE
Confidence 7999999999999998754334443
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=6.6e-09 Score=93.59 Aligned_cols=171 Identities=10% Similarity=0.141 Sum_probs=122.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eE---EEEeeecccCCcceEEEEECCCCCEEEEEeCCCeE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIV 193 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 193 (372)
..+.+|...|..++--.+.+.+++++.|.+|++|.+... .. .........|+.+|.++.|-.+-+.+++ .||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 346789999999887778888999999999999998742 11 1233456788889999999998887775 48899
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeEEEEee-----c
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAG-SSDDCIYVYDLEANKLSLRIL-----A 267 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-----~ 267 (372)
++||.--++........ ..+ +-...|.|+. +-+...++.| +...+|+++|.+..+-...++ +
T Consensus 807 HlWDPFigr~Laq~~da-pk~----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDA-PKE----------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred eeecccccchhHhhhcC-ccc----------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 99998766653322111 100 1122344432 1234445444 778999999999876544443 3
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT 303 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~ 303 (372)
...-+.+++.. +.|+.++.+-.+|.|.+.|.++.+
T Consensus 875 Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 875 PNALTRAIAVA-DKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred CchheeEEEec-cCcchhhHHhcCCcEEEEecCCCc
Confidence 44568899998 999999999999999999998665
No 279
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4.6e-07 Score=82.05 Aligned_cols=163 Identities=14% Similarity=0.166 Sum_probs=111.2
Q ss_pred EEEECCCCCEEEE-Ee--C---------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE--EeCCCeEE
Q 017421 129 VSQFSADGSLFVA-GF--Q---------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY--ASMSPIVH 194 (372)
Q Consensus 129 ~~~~s~~~~~l~~-~~--~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~ 194 (372)
.+.|++-|+-|++ ++ - +.++++.+++.. .... .....++|.++.|+|+++.+++ |-.-..+.
T Consensus 222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V---~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvt 297 (566)
T KOG2315|consen 222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSV---PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVT 297 (566)
T ss_pred EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEE---ecCCCCCceEEEECCCCCEEEEEEecccceEE
Confidence 4678877664332 21 1 236888887733 2222 2233458999999999987665 45567899
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEEEeecCCCC
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSLRILAHTSD 271 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~ 271 (372)
++|++..- +..+.+ ++-+++-|+|.|++|+.++-+ |.|.+||+.+.+++..+....
T Consensus 298 ifnlr~~~---v~df~e----------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-- 356 (566)
T KOG2315|consen 298 IFNLRGKP---VFDFPE----------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-- 356 (566)
T ss_pred EEcCCCCE---eEeCCC----------------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--
Confidence 99987532 222222 367889999999999876654 789999999988887776543
Q ss_pred eEEEEEeCCCCCEEEEEeC------CCeEEEEeccc--c-cCCCC-CeeEEEeccC
Q 017421 272 VNTVCFGDESGHLIYSGSD------DNLCKVNSVLL--L-TRSIN-PCNKYLFNPC 317 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~------dg~i~vwd~~~--~-~~~~~-~v~~~~~s~~ 317 (372)
-+-+.|+ |||++|+|+.. |+.++||+..- + ..+-. ....+.|-|.
T Consensus 357 tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 357 TTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred ceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeec
Confidence 3557899 99999998864 68899999851 1 11112 4677777764
No 280
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=7e-09 Score=85.00 Aligned_cols=165 Identities=7% Similarity=0.053 Sum_probs=105.1
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCe
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPI 192 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~ 192 (372)
+.+..|.++-.+-+.+--++.++++..||.+.+++.+....+.... ...|.+ -.+.+....++.+.++.. -+.
T Consensus 83 ~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i-~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRI-PSIHSG-SASRKICRHGNSILSGGCGNWNAQDN 160 (319)
T ss_pred eeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhc-cccccc-ccccceeecccEEecCCcceEeeccc
Confidence 3444444444444555567789999999999999987632111111 111111 112222334444443321 234
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEEeecCCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTS 270 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~ 270 (372)
.+.|+++..+....... -...|.+++-+|.. +.+++|+.||.+-+||.+... +...+..|+.
T Consensus 161 ~~a~~~~p~~t~~~~~~----------------~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~ 224 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKK----------------ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA 224 (319)
T ss_pred eeeeccccccccccccc----------------ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh
Confidence 55666554332111110 11248888888865 566789999999999999774 3445678999
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
++..+-|+|.++..|++++.||.+-.||..
T Consensus 225 ~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 225 EIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred hhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 999999999999999999999999999976
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=9.6e-07 Score=90.64 Aligned_cols=175 Identities=20% Similarity=0.215 Sum_probs=111.6
Q ss_pred ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEee-----eccc------CCcceEEEEECCCCCEEE-EEeCCCe
Q 017421 126 RAYVSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDI-----LAKS------LRWTVTDTSLSPDQRHLV-YASMSPI 192 (372)
Q Consensus 126 ~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~------~~~~v~~~~~~~~~~~l~-~~~~dg~ 192 (372)
..+.++|+| ++.++++...++.|++||..++......- ...+ .-.....++++|+++.|+ +-+.++.
T Consensus 684 ~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 684 SPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 346789999 56666777778899999988764321100 0000 112466799999998554 5556789
Q ss_pred EEEEECCCCceeeecceee-cccc-cceeccCC---CCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-
Q 017421 193 VHIVDVGSGTMESLANVTE-IHDG-LDFSAADD---GGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL- 266 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~-~~~~-~~~~~~~~---~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~- 266 (372)
|++||+.++.......-.. .... ..+..... .........++++++|+++++-+.++.|++||..++.......
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 9999998765321110000 0000 00000000 0011234688999999988888889999999998876543221
Q ss_pred ------------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 267 ------------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 267 ------------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
+.-.....++++ ++|+++++-+.++.|++||+.+
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd-~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALG-ENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEe-CCCCEEEEECCCCEEEEEECCC
Confidence 111256789999 8999888888999999999864
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.78 E-value=1.6e-06 Score=71.73 Aligned_cols=149 Identities=13% Similarity=0.007 Sum_probs=102.4
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
+.++++++|++++++.+....|..|.+.... .+.. .........-.+..|+.....+|+++.||.+.|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 8899999999999999999999999987542 2322 2233333345678999999999999999999999998755322
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeec-------CCC-CeEEE
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR--ELVAGSSDDCIYVYDLEANKLSLRILA-------HTS-DVNTV 275 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~--~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~-~v~~~ 275 (372)
.... .....|.+.+..+.|+|-|. +|...-.-+.+.+-|++++...+.+.. |.. .|..-
T Consensus 240 ~~~s-----------strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt 308 (344)
T KOG4532|consen 240 AEIS-----------STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT 308 (344)
T ss_pred hhhc-----------ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc
Confidence 2211 11124788999999998663 444444457899999999875444431 222 36666
Q ss_pred EEeCCCCCEEEEE
Q 017421 276 CFGDESGHLIYSG 288 (372)
Q Consensus 276 ~~sp~~~~~l~s~ 288 (372)
.|+ .++.-+.+.
T Consensus 309 ~f~-~~n~s~~v~ 320 (344)
T KOG4532|consen 309 NFN-NENESNDVK 320 (344)
T ss_pred ccc-CCCcccccc
Confidence 666 555444444
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=4.7e-08 Score=57.77 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=36.6
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS 298 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd 298 (372)
++++.++.+|...|++++|+ |++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~-~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWS-PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEE-TTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEe-cccccceeeCCCCEEEEEC
Confidence 46788999999999999999 8899999999999999997
No 284
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.5e-06 Score=80.53 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=95.3
Q ss_pred CccccCCCCceEEEEECCCCCEEEEE-eC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-C-
Q 017421 117 PWPVDQTTSRAYVSQFSADGSLFVAG-FQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-P- 191 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~~~~~l~~~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g- 191 (372)
...+....+.+....|+|||+.|+.. +. +..|.++++.++.. .. ...+........|+|||+.|+..+.. +
T Consensus 225 ~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~ 300 (419)
T PRK04043 225 KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGY 300 (419)
T ss_pred EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EE---cccCCCccCccEECCCCCEEEEEECCCCC
Confidence 34444456667778999999887654 32 34688888877643 22 11222223456899999988877642 2
Q ss_pred -eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeE
Q 017421 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKL 261 (372)
Q Consensus 192 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~ 261 (372)
.|+++|+.++....+... +. ....|+|||+.|+..+.. ..|.+.|+.++..
T Consensus 301 ~~Iy~~dl~~g~~~rlt~~---------------g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 301 PNIFMKKLNSGSVEQVVFH---------------GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred ceEEEEECCCCCeEeCccC---------------CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 688889988776433220 01 124899999998766543 3688889888764
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 017421 262 SLRILAHTSDVNTVCFGDESGHLIYSGSD 290 (372)
Q Consensus 262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~ 290 (372)
..+... .......|+ |||+.|+....
T Consensus 362 -~~LT~~-~~~~~p~~S-PDG~~I~f~~~ 387 (419)
T PRK04043 362 -RRLTAN-GVNQFPRFS-SDGGSIMFIKY 387 (419)
T ss_pred -EECCCC-CCcCCeEEC-CCCCEEEEEEc
Confidence 344433 233468899 99998776654
No 285
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.5e-08 Score=84.12 Aligned_cols=142 Identities=16% Similarity=0.149 Sum_probs=102.0
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec
Q 017421 141 AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (372)
Q Consensus 141 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
+.+.+..|-+-+++++-. .. + ...+.|.++.|...++++..|+.+|.|.++|++....-........
T Consensus 229 s~G~sqqv~L~nvetg~~--qs--f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-------- 295 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQ--QS--F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-------- 295 (425)
T ss_pred cccccceeEEEEeecccc--cc--c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--------
Confidence 334456677888887622 11 1 2445799999999999999999999999999987621111111000
Q ss_pred cCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeE---EEEeecCCCCeEEE--EEeCCCCCEEEEEeCCCeE
Q 017421 221 ADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKL---SLRILAHTSDVNTV--CFGDESGHLIYSGSDDNLC 294 (372)
Q Consensus 221 ~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~--~~sp~~~~~l~s~~~dg~i 294 (372)
-|.+.|+++..-. ++++|++.+.+|+|++||++--++ +.++.+|...-.-+ -.. +....+++++.|...
T Consensus 296 ----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 ----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYT 370 (425)
T ss_pred ----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEE
Confidence 2667888887665 678999999999999999987766 78888886543332 334 555677889999999
Q ss_pred EEEecc
Q 017421 295 KVNSVL 300 (372)
Q Consensus 295 ~vwd~~ 300 (372)
|||.++
T Consensus 371 RiWsl~ 376 (425)
T KOG2695|consen 371 RIWSLD 376 (425)
T ss_pred EEEecc
Confidence 999998
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.75 E-value=3.8e-05 Score=66.16 Aligned_cols=196 Identities=19% Similarity=0.160 Sum_probs=119.7
Q ss_pred EeeeeeCCCCCccccCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeec-cc-CCcceEEEEECCCCCE
Q 017421 107 MLSRYLPVNGPWPVDQTTSRAYVSQFS-ADGSLFVAGFQASQIRIYDVERGWKIQKDILA-KS-LRWTVTDTSLSPDQRH 183 (372)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~ 183 (372)
.++.+.+............ ..++++. +++. |+++... .+.++|+.++......... .. ....+..+++.|+|++
T Consensus 23 ~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~l 99 (246)
T PF08450_consen 23 RIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNL 99 (246)
T ss_dssp EEEEEETTTTEEEEEESSS-EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-E
T ss_pred EEEEEECCCCeEEEEecCC-CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCE
Confidence 3444444443333222233 7777887 6655 4444554 4566698887443322221 12 3456889999999997
Q ss_pred EEEEeCC--------CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCeEEEE
Q 017421 184 LVYASMS--------PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDCIYVY 254 (372)
Q Consensus 184 l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~i~iw 254 (372)
.++.... |.|..++.. ++....... -...+.|+|+|+++.|+ +-+..+.|..|
T Consensus 100 y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-----------------~~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 100 YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-----------------LGFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp EEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-----------------ESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCccccccccceEEECCC-CeEEEEecC-----------------cccccceEECCcchheeecccccceeEEE
Confidence 7776543 557777777 443322221 12578999999998775 55677889999
Q ss_pred ECCCCe-------EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-----cccCCCCCeeEEEe-ccCCCeE
Q 017421 255 DLEANK-------LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-----LLTRSINPCNKYLF-NPCNKYL 321 (372)
Q Consensus 255 d~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-----~~~~~~~~v~~~~~-s~~g~~l 321 (372)
++.... ....+....+....+++. .+|++.++....+.|.++|.+ .+.-....+++++| -++.+.|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence 985321 111222222347889998 899988888789999999976 12222358899999 4676766
Q ss_pred EEE
Q 017421 322 IIY 324 (372)
Q Consensus 322 ~~~ 324 (372)
++.
T Consensus 241 ~vT 243 (246)
T PF08450_consen 241 YVT 243 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.73 E-value=2.9e-08 Score=92.39 Aligned_cols=201 Identities=16% Similarity=0.166 Sum_probs=134.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC--CEEEEEeCCCeEEEEECCCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ--RHLVYASMSPIVHIVDVGSG 201 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 201 (372)
.+.+..+.++|.|+-+|.++.-| +.+.|+...-..... ..+-..+.|-.+.|+|.. .+-++....-.-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~-l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRW-LHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCcee-eeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45778899999999999988866 667777654221111 112234467788898843 33344444444558988755
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe-EEEEeecCCCCeEEEEEeC
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-RELVAGSSDDCIYVYDLEANK-LSLRILAHTSDVNTVCFGD 279 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp 279 (372)
....+..... ||...|+.+.|+|.. ..+++++.|..+..||+++.. ++.....-...-..|+|+-
T Consensus 102 s~~aIef~lh-------------ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 102 SSNAIEFVLH-------------GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CccceEEEEe-------------cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 4333222221 688899999999976 467899999999999999864 4444443345567899995
Q ss_pred CCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccC--CCeEEEEeeeeEEEeeceEEEeecccceEE
Q 017421 280 ESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPC--NKYLIIYLILVISIYSPNILLDNYFLLRTF 347 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~ 347 (372)
.+++.+|+ +....|.+||++ ++++|...|+++.|..- +..+..+ -|++++.||+......
T Consensus 169 k~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~-------~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 169 KDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS-------NDGTVKFWDYSKSTTE 237 (1081)
T ss_pred cCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC-------CCCceeeecccccccc
Confidence 56665554 467779999998 45578888888888653 3444444 4777778877665443
No 288
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.3e-07 Score=78.15 Aligned_cols=219 Identities=10% Similarity=0.035 Sum_probs=150.2
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSG 201 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~ 201 (372)
|...|+.+.-. -.+++.+++.||.++.|.-..-..+.-......|-..|.+++.+-++.++.+.+. |..++++|+..-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666665443 4678999999999999986543333333345667778899999999999999777 999999998654
Q ss_pred ceeeecceeecc----------------------ccc--ceecc--------CCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421 202 TMESLANVTEIH----------------------DGL--DFSAA--------DDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (372)
Q Consensus 202 ~~~~~~~~~~~~----------------------~~~--~~~~~--------~~~~h~~~i~~~~~sp~~~~l~s~s~dg 249 (372)
.......+.... .+. .+.+. .++-|.++|.++.++|.+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 433222111110 000 00000 1145889999999999999999999899
Q ss_pred eEEEEECCC------CeEEEE---------eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-----------
Q 017421 250 CIYVYDLEA------NKLSLR---------ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------- 303 (372)
Q Consensus 250 ~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------- 303 (372)
.|.-|.... .+.... +........++.|+ |++..+.+-+.|..|++++.++.+
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs-p~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS-PDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEc-cccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 999998772 111111 12234567899999 999999999999999999986211
Q ss_pred ---------------------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 304 ---------------------------R-SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 304 ---------------------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
. ....-+.+.|...|++|+-++- --|++.++.++...+-+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~-------~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTI-------LGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecc-------eeEEEEEeecCeEEEEe
Confidence 1 1223477889999999988752 23567777777766544
No 289
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.9e-06 Score=78.17 Aligned_cols=165 Identities=14% Similarity=0.086 Sum_probs=116.0
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS- 247 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~- 247 (372)
.+.-+-+.|||.|.+|++-...| |.+|-=..-....... | ..|.-+.|||..+||++=+.
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-----------------H-p~Vq~idfSP~EkYLVT~s~~ 270 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-----------------H-PGVQFIDFSPNEKYLVTYSPE 270 (698)
T ss_pred cceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-----------------C-CCceeeecCCccceEEEecCC
Confidence 44567899999999999988776 6788644332211111 1 15888999999999997542
Q ss_pred ----------CCeEEEEECCCCeEEEEeecC--CCCeE-EEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCC
Q 017421 248 ----------DDCIYVYDLEANKLSLRILAH--TSDVN-TVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINP 308 (372)
Q Consensus 248 ----------dg~i~iwd~~~~~~~~~~~~~--~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~ 308 (372)
...+.|||+.+|...+.+... ...+. -+.|| .|++++|--.. .+|.||+...+. -....
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~g 348 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISG 348 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCcc
Confidence 246999999999988777652 22232 36899 99999987655 568899876432 23457
Q ss_pred eeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeEE
Q 017421 309 CNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHIL 355 (372)
Q Consensus 309 v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~~ 355 (372)
|....|+|.++.||--+...-.+ ..++.|-.+.+++.+++-+.|-.
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~-parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNI-PARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ccCcccCCCcceEEEEcccccCC-cceEEEEecCccceeeeccceee
Confidence 88999999999888765433333 45667777777777777666544
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=2.4e-08 Score=94.74 Aligned_cols=178 Identities=20% Similarity=0.180 Sum_probs=126.9
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--CeEEE
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHI 195 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~v 195 (372)
..|..|....+|++|+.+.++|++|+..|.|++|++.+|..... ...|+++|+-+.-+.||..+++.+.- ....+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc---ccccccccccccccCCcceeeeeccccCchHHH
Confidence 35678899999999999999999999999999999999865554 66889999999999999988776543 35678
Q ss_pred EECCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-c---CCC
Q 017421 196 VDVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-A---HTS 270 (372)
Q Consensus 196 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~---~~~ 270 (372)
|++..-. ....+ ..-.++.|+.....-+.|+......+||++++.++.++- + ..-
T Consensus 1172 W~~~s~~~~~Hsf--------------------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF--------------------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred hccccccCccccc--------------------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 9986521 11111 134577887665555667666779999999998766632 1 122
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEEe
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.-++..|+ |+..+++ .||. +||++... ... .--.-.|+|+|.-++.-+
T Consensus 1232 ~~n~a~Fs-P~D~LIl---ndGv--LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1232 SNNLAHFS-PCDTLIL---NDGV--LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred hccccccC-CCcceEe---eCce--eeeeccHHHHhhhhhhe-ecccccccCCCceEEeec
Confidence 33678899 7777776 5664 89998432 111 112236899998877664
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=9.4e-07 Score=83.46 Aligned_cols=176 Identities=13% Similarity=0.090 Sum_probs=122.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
...++|++++ +++|+-|+.+|.|++++..... .. ...|... ..+|.++++++.||.|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~---~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KT---NFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--cc---ccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3467777777 7889999999999999976542 11 2233222 56899999999999999998887765
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCC-----CCEEEEEeCCCeEEEEECCC--CeEEEEeecCCCCeEEEE
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-----GRELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-----~~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~ 276 (372)
.....+ .-++.+++++|+ .+.+++|+..| +.++.-+- .+....+....++|.++.
T Consensus 106 ~~~~df-----------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 106 ITQYDF-----------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK 167 (846)
T ss_pred ceeEec-----------------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE
Confidence 443332 238999999998 56788998888 76665321 111124556778999999
Q ss_pred EeCCCCCEEEEEeCCCeEEEEeccccc-------CC-----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 277 FGDESGHLIYSGSDDNLCKVNSVLLLT-------RS-----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd~~~~~-------~~-----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
|. |+++|-++.+| |+|||+.+-+ .+ ..-...+.|.++. .|+.| |-.+|++..+.
T Consensus 168 W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-------W~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 WR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-------WGDSVKICSIK 233 (846)
T ss_pred ec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-------cCCeEEEEEEe
Confidence 96 88999997777 8999986322 11 1123567787764 55566 66666666665
No 292
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.64 E-value=8.7e-05 Score=63.94 Aligned_cols=191 Identities=15% Similarity=0.106 Sum_probs=121.0
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC-CCCCEEEEEeCCCeEEEEECCCCceeee
Q 017421 129 VSQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS-PDQRHLVYASMSPIVHIVDVGSGTMESL 206 (372)
Q Consensus 129 ~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 206 (372)
++.|.+ ++.++++-...+.|..|+..++..... .... ...+.+. ++++ ++.+...+ +.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--~~~~----~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--DLPG----PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--ESSS----EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--ecCC----CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence 578998 677777777789999999988744321 1222 6677777 5654 55555544 55669998876555
Q ss_pred cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD--------DCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
....... ......+.+++.|+|++.++.... |.|..++.. ++...... .-...+.++|+
T Consensus 76 ~~~~~~~-----------~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGG-----------VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFS 142 (246)
T ss_dssp EEEETTC-----------SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEE
T ss_pred eeccCCC-----------cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEEC
Confidence 4432110 023478999999999977776643 567778877 55433333 34567899999
Q ss_pred CCCCCEEE-EEeCCCeEEEEeccccc-------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 279 DESGHLIY-SGSDDNLCKVNSVLLLT-------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 279 p~~~~~l~-s~~~dg~i~vwd~~~~~-------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
++++.|+ +-+..+.|..+++.... ......-.+++..+|++.++.. -.+.|.+++-. |
T Consensus 143 -~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------~~~~I~~~~p~-G 214 (246)
T PF08450_consen 143 -PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------GGGRIVVFDPD-G 214 (246)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------TTTEEEEEETT-S
T ss_pred -CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------CCCEEEEECCC-c
Confidence 8888766 45577888888875110 1112367899999998766552 13555555555 5
Q ss_pred eEEE
Q 017421 345 RTFY 348 (372)
Q Consensus 345 ~~~~ 348 (372)
+.+.
T Consensus 215 ~~~~ 218 (246)
T PF08450_consen 215 KLLR 218 (246)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 5443
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=1.1e-05 Score=74.18 Aligned_cols=114 Identities=14% Similarity=0.149 Sum_probs=81.6
Q ss_pred ceEEEEECC-CCCEEEEE----eCCCe----EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE
Q 017421 171 TVTDTSLSP-DQRHLVYA----SMSPI----VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE 241 (372)
Q Consensus 171 ~v~~~~~~~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~ 241 (372)
...++.|+- +...+.+. +.+|. -.+|++..++........- ...+.|.+++++|+...
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-------------pL~s~v~~ca~sp~E~k 273 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-------------PLPSQVICCARSPSEDK 273 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-------------ecCCcceEEecCcccce
Confidence 356667766 33444432 22333 4567776665443322221 13458999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 242 LVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 242 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
++.|..||.|.+||...+..... ...-.++.++|+ |+|.++++|+..|.+.+||+.
T Consensus 274 LvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWH-p~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 274 LVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWH-PDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEecCCeEEEEEcCCCeeeee--eecccceEEEEc-CCCcEEEEEcCCceEEEEEee
Confidence 99999999999999987754322 345667899999 999999999999999999985
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=2.1e-07 Score=79.49 Aligned_cols=141 Identities=16% Similarity=0.202 Sum_probs=101.3
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEeeecccCCcceEEEEECC-CCCEEEEEeCCCeEEEEEC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG---WKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~ 198 (372)
.++.|.++.|+..++++..|+.+|.|.++|++.. ...... .--|.+.|+++..-. ++++|.+.+.+|.|++||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE--EEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 5778999999999999999999999999999754 111111 224566788888777 7889999999999999999
Q ss_pred CCCceeeecceeecccccceeccCCCCccc--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC----CCCe
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSF--GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH----TSDV 272 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v 272 (372)
+.-++.......+ ||-+ .-.-+..++....++++++|...+||.++.+..+.+++-. +..+
T Consensus 329 R~~K~~~~V~qYe-------------GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~ 395 (425)
T KOG2695|consen 329 RATKCKKSVMQYE-------------GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDI 395 (425)
T ss_pred hhhhcccceeeee-------------cccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccc
Confidence 8766532222222 2221 1222334566778888999999999999999988887632 2345
Q ss_pred EEEEEe
Q 017421 273 NTVCFG 278 (372)
Q Consensus 273 ~~~~~s 278 (372)
.+++|.
T Consensus 396 ~sv~~~ 401 (425)
T KOG2695|consen 396 PSVAFD 401 (425)
T ss_pred cceehh
Confidence 566664
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.57 E-value=7.2e-05 Score=64.73 Aligned_cols=205 Identities=12% Similarity=0.098 Sum_probs=131.3
Q ss_pred CCceEEEEECC-CCCEEEEEeCCC-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEE
Q 017421 124 TSRAYVSQFSA-DGSLFVAGFQAS-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~-~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw 196 (372)
+.+...++.+| ....++.+-.-| ...+||..++..........+ ..-.-.-.|++||++|++.-. .|.|-||
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g-RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG-RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC-CEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 34566788899 455566666655 478899999876654332222 212335689999999988633 5789999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe------------------CCCeEEEEECCC
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------SDDCIYVYDLEA 258 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------------~dg~i~iwd~~~ 258 (372)
|...+ ...+-.+. .|.-....+.+.|||+.|+++- .+.++...|..+
T Consensus 83 d~~~~-~~ri~E~~--------------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 83 DAARG-YRRIGEFP--------------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred ECcCC-cEEEeEec--------------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 99832 22222211 1222455678899997777653 122455667777
Q ss_pred CeEEEEee----cCCCCeEEEEEeCCCCCEEEEEeCCCe-------EEEEeccc-----------ccCCCCCeeEEEecc
Q 017421 259 NKLSLRIL----AHTSDVNTVCFGDESGHLIYSGSDDNL-------CKVNSVLL-----------LTRSINPCNKYLFNP 316 (372)
Q Consensus 259 ~~~~~~~~----~~~~~v~~~~~sp~~~~~l~s~~~dg~-------i~vwd~~~-----------~~~~~~~v~~~~~s~ 316 (372)
|+.+.+.. -|...|..+++. ++|..++..-..|. |-+++... ......-+-++++++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~ 226 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADR 226 (305)
T ss_pred CceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeC
Confidence 87666533 367789999998 88876665433321 33343321 124456789999999
Q ss_pred CCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 317 CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+|..+++++.. -+.+.+||..+++.+...
T Consensus 227 ~g~~ia~tsPr-----Gg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 227 DGRLIAVTSPR-----GGRVAVWDAATGRLLGSV 255 (305)
T ss_pred CCCEEEEECCC-----CCEEEEEECCCCCEeecc
Confidence 99998877432 367788888888876654
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.57 E-value=4.6e-05 Score=65.18 Aligned_cols=188 Identities=14% Similarity=0.079 Sum_probs=115.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
++..+++++.++.|..||..+++.+............ . ...+..+++++.++.+..+|..+|+.......... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~ 108 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-P 108 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce----e-eecccccccccceeeeEecccCCcceeeeeccccc-c
Confidence 5667777789999999999999776654442221221 1 22456677777888999999999987544211110 0
Q ss_pred ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCC----------eEEEEEeCCCCCE
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSD----------VNTVCFGDESGHL 284 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v~~~~~sp~~~~~ 284 (372)
. .. ....+....++..++.+..++.|..+|+++|+.+......... +..-... .++ .
T Consensus 109 ~----------~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 175 (238)
T PF13360_consen 109 P----------AG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R 175 (238)
T ss_dssp T----------CS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E
T ss_pred c----------cc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E
Confidence 0 00 1111222223778888888999999999999998887654322 1122222 344 6
Q ss_pred EEEEeCCCe-EEEEeccccc----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421 285 IYSGSDDNL-CKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYS 349 (372)
Q Consensus 285 l~s~~~dg~-i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~ 349 (372)
++.++.++. +.+ |+.+.. .....+.. ...+++..|++.. .++.+..||..+|+.+..
T Consensus 176 v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~------~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGEKLWSKPISGIYS-LPSVDGGTLYVTS------SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTEEEEEECSS-ECE-CEECCCTEEEEEE------TTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCeEEEE-ECCCCCEEEEecCCCccC-CceeeCCEEEEEe------CCCEEEEEECCCCCEEeE
Confidence 666667775 555 876543 11112222 1345666666663 379999999999998765
No 297
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.56 E-value=2.3e-05 Score=79.28 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=124.2
Q ss_pred CCCceEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeE
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQ---A---SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIV 193 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i 193 (372)
+...-..++|-.||.+||+.+- . ..++||+-+ |..-.... ...+--.+++|.|.|++||+... ...|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEE
Confidence 3445667899999999998764 2 579999965 53322211 22223457899999999998765 2345
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEee-cCCC
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRIL-AHTS 270 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~~ 270 (372)
.+|.-+ |-....+.+... .....|..+.|++|+..||..-.|. |.+|-..+.. ..+.+. ....
T Consensus 284 vFfErN-GLrhgeF~l~~~------------~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~ 349 (928)
T PF04762_consen 284 VFFERN-GLRHGEFTLRFD------------PEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE 349 (928)
T ss_pred EEEecC-CcEeeeEecCCC------------CCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC
Confidence 555533 222222222110 1234789999999999999877555 9999988754 223333 1233
Q ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEecc----c------------------------cc-------------CCCCCe
Q 017421 271 DVNTVCFGDESGHLIYSGSDDNLCKVNSVL----L------------------------LT-------------RSINPC 309 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~----~------------------------~~-------------~~~~~v 309 (372)
.+..+.|+|.+...|...+.+|.+..+++. . +. ....+|
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v 429 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPV 429 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCc
Confidence 455699997777778888777777665542 0 00 245678
Q ss_pred eEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 310 NKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 310 ~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
..++|++++..+++.. -|+++.+|..
T Consensus 430 ~~vaf~~~~~~~avl~------~d~~l~~~~~ 455 (928)
T PF04762_consen 430 NDVAFSPSNSRFAVLT------SDGSLSIYEW 455 (928)
T ss_pred EEEEEeCCCCeEEEEE------CCCCEEEEEe
Confidence 9999999987655553 3555666553
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.54 E-value=2e-07 Score=55.00 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=33.1
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 152 (372)
..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45789999999999999999999999999999997
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.4e-05 Score=75.71 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=99.1
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-----CCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 133 SADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-----QRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 133 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
..+|.++++|+.||+|.|..+.+++...... ...++.+++++|+ .+++++|+..| +.++.-+--......
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v 154 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV 154 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce
Confidence 3469999999999999999998876555432 2337999999997 56799999988 766653321111011
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC------CeEEEEEeCCC
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS------DVNTVCFGDES 281 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp~~ 281 (372)
... ...++|.++.|. |++||=++.+| |++||+.+++.+..+..... ....+.|. +
T Consensus 155 -~l~-------------~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~--~ 215 (846)
T KOG2066|consen 155 -VLS-------------EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ--D 215 (846)
T ss_pred -eee-------------cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec--C
Confidence 111 123589999997 77888877666 89999999887776653322 23467886 4
Q ss_pred CCEEEEEeCCCeEEEEecc
Q 017421 282 GHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 282 ~~~l~s~~~dg~i~vwd~~ 300 (372)
...|+.| ...+|+|..++
T Consensus 216 ~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 216 EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCeEEEe-cCCeEEEEEEe
Confidence 4556655 55678888877
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=3.7e-05 Score=64.65 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=31.7
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT 303 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~ 303 (372)
....|..|..| |||.+||+...+|.|.+|++..+.
T Consensus 228 ~~d~i~kmSlS-Pdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLS-PDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEEC-CCCCEEEEEEcCCeEEEEecCcch
Confidence 46789999999 999999999999999999998654
No 301
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=3.9e-07 Score=82.49 Aligned_cols=184 Identities=16% Similarity=0.102 Sum_probs=133.0
Q ss_pred ccCCceeEeeeeeCCCC-------CccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcce
Q 017421 100 SAADCCHMLSRYLPVNG-------PWPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTV 172 (372)
Q Consensus 100 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 172 (372)
.+.|+++++|...+... .+..+.|+.+|..+.|-.+-+++++ .||-|++||.-.++.+........+. .+
T Consensus 753 ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~-a~ 829 (1034)
T KOG4190|consen 753 ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEG-AG 829 (1034)
T ss_pred ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccC-CC
Confidence 56778899999887532 4566889999999999999888775 46889999998776655433333332 23
Q ss_pred EEEEECC--CCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC
Q 017421 173 TDTSLSP--DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD 249 (372)
Q Consensus 173 ~~~~~~~--~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg 249 (372)
..+.--+ +...++.+ +...+|+++|.+........+.... .+....+.+++..|.|++++.+-.+|
T Consensus 830 ~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna-----------~~Pna~~R~iaVa~~GN~lAa~LSnG 898 (1034)
T KOG4190|consen 830 GNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA-----------PGPNALTRAIAVADKGNKLAAALSNG 898 (1034)
T ss_pred ceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC-----------CCCchheeEEEeccCcchhhHHhcCC
Confidence 3344334 33333333 6688999999998876544443321 13445789999999999999999999
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEE-Eec
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKV-NSV 299 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~v-wd~ 299 (372)
+|.+.|.++|+.+..+...+.....++- |..+.|+....|.++.+ |..
T Consensus 899 ci~~LDaR~G~vINswrpmecdllqlaa--psdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 899 CIAILDARNGKVINSWRPMECDLLQLAA--PSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred cEEEEecCCCceeccCCcccchhhhhcC--chhHHHHhhcccceeEeeehh
Confidence 9999999999988877766655555544 66777887778888888 764
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=8.8e-06 Score=76.79 Aligned_cols=155 Identities=13% Similarity=0.086 Sum_probs=117.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC------------CEEEEEeCCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ------------RHLVYASMSP 191 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg 191 (372)
...-.+++|+|.| +||.|+. ..|.|.|..+-+.+.. ...|+..|+.+.|.|-. -.|+++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqs---ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQS---IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhc---cccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3446778999977 5777765 5788999887766665 55777889999998721 2467777789
Q ss_pred eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeEEEEeec
Q 017421 192 IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST---DG-RELVAGSSDDCIYVYDLEANKLSLRILA 267 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp---~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 267 (372)
.|.+||...+..+.... .|..++..++|-| +. ..|++-.....+.+|+..+|+.......
T Consensus 90 rIil~d~~~~s~~~~l~----------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS----------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred cEEEEEehhhhhhhhhc----------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 99999998876543333 2445778888865 34 4666667778999999999999888876
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
......|+.+.|-|.+.+..-+..|.+.+-+.
T Consensus 154 s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred CCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 66778889999888888887778888777664
No 303
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.47 E-value=0.00017 Score=61.33 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=109.4
Q ss_pred cccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE
Q 017421 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD 197 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 197 (372)
.+.+-...+.+++|+|+.+ ++++....+.|..++.+ ++.+... ...+. +..-++++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-PLDGF-GDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-E-SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-eCCCC-CCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 4455566799999999755 56667777888888864 5555543 33333 3578899987887777665689999998
Q ss_pred CCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEe--e-----
Q 017421 198 VGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA---NKLSLRI--L----- 266 (372)
Q Consensus 198 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~---~~~~~~~--~----- 266 (372)
+..... ........ +.......+...+-.++|+|.++.|+.+-...-..+|.++. ...+... .
T Consensus 93 ~~~~~~~~~~~~~~~------~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 93 IDDDTTSLDRADVQK------ISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp E----TT--EEEEEE------EE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EeccccccchhhceE------EecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccc
Confidence 844321 11110000 00000012345789999999887777776665566666543 2121111 1
Q ss_pred -cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------ccc-------CCCCCeeEEEeccCCCeEEEEe
Q 017421 267 -AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLT-------RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 267 -~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~-------~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.....+.+++++|.++++++.......|..+|.. .+. ..-...-.++|.++|++.+++-
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred cceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 2345688999998888888888888888888854 111 1224578899999998877773
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=3.5e-05 Score=76.38 Aligned_cols=193 Identities=16% Similarity=0.066 Sum_probs=124.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
...|.++.|..+.+.++.+...|.|.+-|.++..... .......|.+++|+||+..++..+..+++.+..- .-.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI----VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee----eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccc
Confidence 3689999999999999999999999999988763322 2233346999999999999999998888766542 1111
Q ss_pred eeecce-------------eecccccceeccCC----------------CCccccEEEEEEcCCCCEEEEE-----eCCC
Q 017421 204 ESLANV-------------TEIHDGLDFSAADD----------------GGYSFGIFSLKFSTDGRELVAG-----SSDD 249 (372)
Q Consensus 204 ~~~~~~-------------~~~~~~~~~~~~~~----------------~~h~~~i~~~~~sp~~~~l~s~-----s~dg 249 (372)
+....+ .-......|.+... ....+.=+.|.|--||.++++. ....
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred hhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111110 00000112221110 0011223468999999999873 2237
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccccc---------CCCCCeeEEEeccC
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLLLT---------RSINPCNKYLFNPC 317 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~ 317 (372)
.|++||-+ |..-.+-....+--.+++|- |.|.++++.. .|+.|.+|..+-+. .....|..++|+.+
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 89999987 44322222223344689998 8999998864 45679999865221 22234899999999
Q ss_pred CCeEEE
Q 017421 318 NKYLII 323 (372)
Q Consensus 318 g~~l~~ 323 (372)
+..|++
T Consensus 301 sdiLAv 306 (1265)
T KOG1920|consen 301 SDILAV 306 (1265)
T ss_pred CCceee
Confidence 999987
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=7.6e-06 Score=76.49 Aligned_cols=201 Identities=15% Similarity=0.131 Sum_probs=130.7
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
++..|.--+++..+++++.|+.-|.+++|+-..+..... . ..+....+..+..+++..++|.|+..|.|.++.+..+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 455666677888899999999999999999776633221 1 22233457778899999999999999999999987744
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----EEEEeecCCCCeEEEEEe
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK----LSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s 278 (372)
....... .+.+..|...|++++|++++..+++|...|+|..-.+.+.. ..+.+..-.+.|..+.+.
T Consensus 110 p~~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 3222221 12223477899999999999999999999999888887621 222333345677677664
Q ss_pred CCCCCEEEEEeCCCeEEEEecc--cc----cCCCC--CeeEEEeccC----C-CeEEEEeeeeEEEeeceEEEeecccce
Q 017421 279 DESGHLIYSGSDDNLCKVNSVL--LL----TRSIN--PCNKYLFNPC----N-KYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~--~~----~~~~~--~v~~~~~s~~----g-~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
++.+|++..... .+++++ +. +.... .-...+|-|. . -.|+++ -+..++|.+.-..
T Consensus 180 --q~~LLVStl~r~--~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca--------RPG~RlWead~~G 247 (726)
T KOG3621|consen 180 --QSYLLVSTLTRC--ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA--------RPGLRLWEADFAG 247 (726)
T ss_pred --cceehHhhhhhh--heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe--------cCCCceEEeecce
Confidence 555555543332 233433 11 11111 2355667664 2 234444 5667888886544
Q ss_pred EE
Q 017421 346 TF 347 (372)
Q Consensus 346 ~~ 347 (372)
++
T Consensus 248 ~V 249 (726)
T KOG3621|consen 248 EV 249 (726)
T ss_pred eE
Confidence 43
No 306
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00011 Score=63.57 Aligned_cols=176 Identities=18% Similarity=0.126 Sum_probs=110.9
Q ss_pred EEECCCCCEEEEEe-----CCCcEEEEeCCC-CeEEEEeeecccCCcceEEEEECCCCCEEEEEeC--------------
Q 017421 130 SQFSADGSLFVAGF-----QASQIRIYDVER-GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------- 189 (372)
Q Consensus 130 ~~~s~~~~~l~~~~-----~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------- 189 (372)
-.||+||++|.+.- ..|.|-|||... ...+.+ ...+.-....+.+.||++.|+++..
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E---~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE---FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE---ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecC
Confidence 46999999998853 357899999983 333333 3344445778899999988887632
Q ss_pred ----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-------EEEEECCC
Q 017421 190 ----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-------IYVYDLEA 258 (372)
Q Consensus 190 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-------i~iwd~~~ 258 (372)
+..+...|..+|+......+... -|...|..+++.++|..++..-..|. |-+++..
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~------------~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g- 199 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPD------------LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG- 199 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCcc------------ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC-
Confidence 12344445555554433332211 36678999999999976665544332 3444333
Q ss_pred CeEEEEee-------cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEE
Q 017421 259 NKLSLRIL-------AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 259 ~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~ 324 (372)
+.+..+. .-.+.+-+|+++ .++.++++.+ ..+.+.+||..+.. ..-..+..++-.+++ +++++
T Consensus 200 -~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 200 -GALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred -CcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeC
Confidence 2222222 234688999999 8888776555 67889999987543 223345666666666 55544
No 307
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=1.6e-06 Score=71.44 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecc-eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----CCeEEE
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLAN-VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----DDCIYV 253 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg~i~i 253 (372)
-++.++++..||.+.+.+.+.- ..... .... |. .-.+.+....++.+.++.- -+..+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~-------------~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSI-------------HS-GSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred cCCceEecCCCceEEEEechHH--Hhhhhhcccc-------------cc-cccccceeecccEEecCCcceEeeccceee
Confidence 4567999999999999997751 11111 1110 00 1111222223444443321 133556
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-------ccCCCCCeeEEEeccC-CCeEEEEe
Q 017421 254 YDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-------LTRSINPCNKYLFNPC-NKYLIIYL 325 (372)
Q Consensus 254 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-------~~~~~~~v~~~~~s~~-g~~l~~~~ 325 (372)
|+++..+.+..-......|++++-+|...+++++|+.||.+-+||.+. +..|..+++.+-|+|. +..|++++
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 666543322221222345999999966777888899999999999983 4589999999999996 55666665
Q ss_pred eeeEEEeeceEEEeeccc
Q 017421 326 ILVISIYSPNILLDNYFL 343 (372)
Q Consensus 326 ~~~~~~~d~~i~lw~~~~ 343 (372)
.||.+-.||..+
T Consensus 244 ------edGslw~wdas~ 255 (319)
T KOG4714|consen 244 ------EDGSLWHWDAST 255 (319)
T ss_pred ------CCCcEEEEcCCC
Confidence 577777777764
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=1.9e-06 Score=72.78 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=114.8
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-----cceEEEEECCC-CCEEEEEeCCCeEE
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-----WTVTDTSLSPD-QRHLVYASMSPIVH 194 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~dg~i~ 194 (372)
..|+-.++++.|+.|...++++. |-.|-+|+++.........-.++|. .-|++..|+|. ...+...+..|.|+
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 56888999999999998888764 5789999987654333333344443 35889999994 45667778899999
Q ss_pred EEECCCCce-eeecceee-cccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCC--
Q 017421 195 IVDVGSGTM-ESLANVTE-IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHT-- 269 (372)
Q Consensus 195 vwd~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~-- 269 (372)
+-|++.... .....+.. ...+..... -.+-...|..+.|+++|++|++-+. -+|++||++.. .++.++.-|.
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~~f--f~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDVDF--FEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccchh--HHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence 999985432 11111100 000000000 0012347888999999999887654 78999999864 4667765442
Q ss_pred ----------CCe---EEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 270 ----------SDV---NTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 270 ----------~~v---~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
..| ..+.|+ .+.+.+++|+..+..-+|-.
T Consensus 325 ~~~l~d~YEnDaifdkFeisfS-gd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFS-GDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred HHHHHhhhhccceeeeEEEEec-CCcccccccccccceeeecc
Confidence 233 347788 88888889988777777653
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7.5e-05 Score=71.57 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=118.1
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcc-eEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcee
Q 017421 131 QFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTME 204 (372)
Q Consensus 131 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 204 (372)
+|++.+..++.|+.+|.|.+++-.-. .+.. ...+... |+.+....+..+|++.+.|+ .+++|+++.-+..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~---fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRG---FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeeh---heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 57888999999999998887764321 1122 3333334 44444444446777776654 4899998754311
Q ss_pred eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeEEEEeecCCCCeEEEEEeCC
Q 017421 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE----ANKLSLRILAHTSDVNTVCFGDE 280 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~sp~ 280 (372)
........+ ...+..-+....++.+++.+.+-+.+|+|-.+|.|..+.-+ .+....-......+|+.+.+. .
T Consensus 106 ~sP~c~~~~---ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~-~ 181 (933)
T KOG2114|consen 106 NSPQCLYEH---RIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR-S 181 (933)
T ss_pred CCcceeeee---eeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe-c
Confidence 100000000 00010001234589999999998999999999999988532 122212222345699999998 7
Q ss_pred CCCEEEEEeCCCeEEEEecc--c-----ccCCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 281 SGHLIYSGSDDNLCKVNSVL--L-----LTRSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 281 ~~~~l~s~~~dg~i~vwd~~--~-----~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
++..++-+..-..|.+|.+. + +..+..++.+-.|++....++++.+..+..||
T Consensus 182 d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 182 DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 77662222234568888875 2 33566777888888876657777666666665
No 310
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.42 E-value=5.8e-06 Score=76.04 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=82.5
Q ss_pred ceEEEEECC-CCCEEEEE----eCCCc----EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE
Q 017421 126 RAYVSQFSA-DGSLFVAG----FQASQ----IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 126 ~v~~~~~s~-~~~~l~~~----~~dg~----i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
...++.||. +...+.+. +.+|. -.+|+...++.-......-..+..|.+++++|+...++.|+.||.|.+|
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILY 286 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEE
Confidence 345566766 33344432 22332 3567766553323333334566689999999999999999999999999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 261 (372)
|...+....... .-.++.++|+|+|..+++|+..|.+.+||+.-...
T Consensus 287 D~~~~~t~~~ka------------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 287 DTTRGVTLLAKA------------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EcCCCeeeeeee------------------cccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 998775432211 12678899999999999999999999999875543
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.41 E-value=6.9e-06 Score=78.81 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=124.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (372)
+..++.|+--..+..+|+.+....+...... ..|+-+. .+++.+.+|...|+|.+-|.++.+.+....
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccC---CceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 3445566665678888988775544322211 1244444 367899999999999999999887654443
Q ss_pred cceeccCCCCccccEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---------DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIY 286 (372)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~ 286 (372)
.|++.|..+.. .|+.|++++. |.-|+|||++.-+.+..+.-+-++ .-+.|+|.-...++
T Consensus 215 ---------aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 215 ---------AHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------ccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence 46677876654 5888888764 456899999987766555544333 56788866778899
Q ss_pred EEeCCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEee
Q 017421 287 SGSDDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDN 340 (372)
Q Consensus 287 s~~~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~ 340 (372)
+++..|...+-|..++. .....+..++++++|+.|+.+. .++.|.+|-
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd------~~g~v~~wa 340 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGD------HEGHVNLWA 340 (1118)
T ss_pred EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEec------ccCcEeeec
Confidence 99999999999954332 3345589999999999999884 478888886
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.39 E-value=4.2e-05 Score=69.00 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=115.9
Q ss_pred EEEECCCCCEEEEEe-----------CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe--CCCeEEE
Q 017421 129 VSQFSADGSLFVAGF-----------QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS--MSPIVHI 195 (372)
Q Consensus 129 ~~~~s~~~~~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~v 195 (372)
.+.|++.|++|++-- ....+.++++... .+.. .....++|...+|.|.++.+++.+ .+-.+.+
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V---~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~ 302 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPV---EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSV 302 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccce---eccccccceeeeecccCCceeEEecccccceee
Confidence 457888888876421 1246788888743 2222 224456899999999888876654 5778899
Q ss_pred EECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEEE-EeecCCCC
Q 017421 196 VDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLSL-RILAHTSD 271 (372)
Q Consensus 196 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~~-~~~~~~~~ 271 (372)
+|++.. .. ...++ ..-+.+.|+|.+++++.++-| |.+.+||......+. .+.+. .
T Consensus 303 ~~lr~N-l~--~~~Pe----------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n 361 (561)
T COG5354 303 FDLRGN-LR--FYFPE----------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--N 361 (561)
T ss_pred cccccc-eE--EecCC----------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--C
Confidence 999876 21 11111 245668899999999987765 679999988665443 55543 3
Q ss_pred eEEEEEeCCCCCEEEEEe------CCCeEEEEecccccCCCCCeeEEEeccCCCeEEEEe
Q 017421 272 VNTVCFGDESGHLIYSGS------DDNLCKVNSVLLLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
..-+.|+ |+++++.+.. .|..|.|||+.--.. ...+.+.|.|.|++..+.+
T Consensus 362 ~s~~~ws-pd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~--fel~~~~W~p~~~~~ttsS 418 (561)
T COG5354 362 TSYCDWS-PDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV--FELTNITWDPSGQYVTTSS 418 (561)
T ss_pred ceEeecc-CCceEEEecCCCcccccCcceEEEEecCchh--hhhhhccccCCcccceeec
Confidence 3456799 9999988763 478899999852221 2678889999888876653
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.5e-05 Score=70.45 Aligned_cols=185 Identities=18% Similarity=0.186 Sum_probs=115.3
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC-
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGF---QA-SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP- 191 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg- 191 (372)
..+..-...+..-+|+|+++.++... .. ..+.++++.++....... ..+ .-...+|+|||+.|+.... ||
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g---~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNG---NNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCC---ccCCccCCCCCCEEEEEECCCCC
Confidence 33444456677788999998876542 22 358999999885443322 222 3456789999998876644 55
Q ss_pred -eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeec
Q 017421 192 -IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-D--CIYVYDLEANKLSLRILA 267 (372)
Q Consensus 192 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~ 267 (372)
.|+++|+.++....+.... +.-..-.|+|||+.|+..+.. | .|.++|.+.... ..+..
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~-----------------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~ 323 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGF-----------------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF 323 (425)
T ss_pred ccEEEEcCCCCcceecccCC-----------------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec
Confidence 4777788776633322111 122356799999999876653 3 377778776654 33433
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeC-CCe--EEEEeccccc-----CCCCCeeEEEeccCCCeEEEEe
Q 017421 268 HTSDVNTVCFGDESGHLIYSGSD-DNL--CKVNSVLLLT-----RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~~-dg~--i~vwd~~~~~-----~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
....-....|+ |+|++|+..+. +|. |.+.|+.... ..........|.|+|+.+...+
T Consensus 324 ~~~~~~~p~~S-pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 324 SGGGNSNPVWS-PDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred cCCCCcCccCC-CCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEec
Confidence 33333377899 99999887764 344 4555543222 3334445678889998887664
No 314
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.29 E-value=0.00023 Score=65.48 Aligned_cols=196 Identities=10% Similarity=0.007 Sum_probs=111.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc--ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW--TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (372)
+..++.++.++.|..||..+++.+.+......... ...+... .+..++.+..++.+..+|.++|+...........
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 45677778889999999998866554322111000 0001111 1246777888899999999998764322211000
Q ss_pred cccceeccCCCCccccE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421 214 DGLDFSAADDGGYSFGI-FSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (372)
Q Consensus 214 ~~~~~~~~~~~~h~~~i-~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg 292 (372)
..... .....+ ....+ .+..+++++.+|.+..||.++++.+..... .....+.. .+..++.++.+|
T Consensus 223 g~~~~------~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--~~~~~p~~---~~~~vyv~~~~G 289 (377)
T TIGR03300 223 GRTEL------ERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--SSYQGPAV---DDNRLYVTDADG 289 (377)
T ss_pred CCCch------hhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--CCccCceE---eCCEEEEECCCC
Confidence 00000 000000 01111 245777788899999999999987766542 11222223 356777778899
Q ss_pred eEEEEecccccC---C----CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE
Q 017421 293 LCKVNSVLLLTR---S----INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 293 ~i~vwd~~~~~~---~----~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
.|..+|..+.+. . .....+... .+..++++. .++.+.++|..+|+.+..+..+.
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~------~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD------FEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe------CCCEEEEEECCCCCEEEEEEcCC
Confidence 999999864321 1 111122222 244555443 47889999999999888776543
No 315
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.28 E-value=0.00049 Score=61.67 Aligned_cols=117 Identities=14% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe----------CCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS----------SDD 249 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s----------~dg 249 (372)
+++++..... |.|.+.|+............... +....++-....+.-++++|+++.+++.. ..+
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~----~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFT----EAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeecc----ccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 7777666655 99999997655433222111100 00000001122344599999998887742 124
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEe-CCCeEEEEeccccc
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGS-DDNLCKVNSVLLLT 303 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~-~dg~i~vwd~~~~~ 303 (372)
.|.++|..+++.+..+.. ...+..++++ +|++ +|++.+ .++.|.++|..+.+
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS-~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GHEIDSINVS-QDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CCceeeEEEC-CCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 799999999999988874 4578999999 9998 777666 57889999987543
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.3e-05 Score=65.61 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=63.7
Q ss_pred cccCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE-EEEEeCCCeEEEE
Q 017421 119 PVDQTTSRAYVSQFSADGS-LFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-LVYASMSPIVHIV 196 (372)
Q Consensus 119 ~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vw 196 (372)
.+..|...|..++|||..+ ++..++.+..|+|.|+++...+..... + ..+++++|.-|... |..|...|.|.+|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 4567788999999999766 788899999999999998755554332 2 36999999987654 5666679999999
Q ss_pred ECCCCc
Q 017421 197 DVGSGT 202 (372)
Q Consensus 197 d~~~~~ 202 (372)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998765
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.5e-06 Score=82.93 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=119.6
Q ss_pred cccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 165 AKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
+..+....++++|+-+.++|+.|+..|.|+++++.+|......+ .|.++|+.+.-+.||..+++
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n----------------cH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN----------------CHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc----------------ccccccccccccCCcceeee
Confidence 45666789999999999999999999999999999997655444 68889999998889988876
Q ss_pred EeCCC--eEEEEECCC-CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----------CCCCCeeE
Q 017421 245 GSSDD--CIYVYDLEA-NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----------RSINPCNK 311 (372)
Q Consensus 245 ~s~dg--~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----------~~~~~v~~ 311 (372)
.+.-. -.-+|++.+ +...+++. .-.++.|+ ..-..-+.|.......+||+.+.. .....-+.
T Consensus 1161 sss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFs-n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFS-NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred eccccCchHHHhccccccCcccccc----ccceeehh-hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 65433 367899864 34444444 34678898 655555666666778999998532 11222366
Q ss_pred EEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEeeeE-EEeeecccC
Q 017421 312 YLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMVHI-LFSGYLHND 363 (372)
Q Consensus 312 ~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~h~-~~~~~~~~~ 363 (372)
..|+|+..++. |||. |||+...+.+..|.-.. ..+|.+|-.
T Consensus 1236 a~FsP~D~LIl---------ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~ 1277 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---------NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPS 1277 (1516)
T ss_pred cccCCCcceEe---------eCce--eeeeccHHHHhhhhhheecccccccCC
Confidence 78999987665 5664 88888877666654443 334555543
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.22 E-value=3.3e-05 Score=74.31 Aligned_cols=150 Identities=12% Similarity=0.101 Sum_probs=108.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---------CCeEEEE
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---------SPIVHIV 196 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vw 196 (372)
.|.-|+. +++++.+|...|+|.+-|..+.+.+.+ ...|.+.|.++. -.|+.|++++. |..|+||
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht---~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVY 251 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHT---FDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVY 251 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeee---eeccccceeeee--ccCCeEEEeecccccccccccchhhhh
Confidence 3554444 588999999999999999998866665 667887776654 46889988875 5568999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-CCEEEEEeCCCeEEEEEC---CCCe-EEEEeecCCCC
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-GRELVAGSSDDCIYVYDL---EANK-LSLRILAHTSD 271 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-~~~l~s~s~dg~i~iwd~---~~~~-~~~~~~~~~~~ 271 (372)
|++.-+.+.-..+.. ...-+.|+|. ...+++.+..|...+-|. .+.. .+..+......
T Consensus 252 DLRmmral~PI~~~~-----------------~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~ 314 (1118)
T KOG1275|consen 252 DLRMMRALSPIQFPY-----------------GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG 314 (1118)
T ss_pred hhhhhhccCCccccc-----------------CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc
Confidence 998876543333221 2234667775 356777888899999883 3321 22333334456
Q ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 272 VNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 272 v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+..++++ ++++.++.|..+|.|.+|--+
T Consensus 315 i~~fDiS-sn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 315 ISAFDIS-SNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceeEEec-CCCceEEEecccCcEeeecCC
Confidence 9999999 999999999999999999743
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.19 E-value=0.00027 Score=65.62 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=103.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEE-ECCCCc
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV-DVGSGT 202 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~ 202 (372)
...+..+.++|+|+++++ +.+|.-.||.....+... .+.-....|.+.+ .+|+-...+.|.++ +++...
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~--------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA--------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE--------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc--------cCceeEEEEecCc-cEEEEECCCeEEEEEcCcccc
Confidence 334678999999999988 456888888854442211 1135678899844 46666668889986 332221
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCC
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESG 282 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 282 (372)
.. ..... ..+..|-. |.+|+..+. +.|.+||+.+++.+..+... +|..+.|+ ++|
T Consensus 102 ~k-~i~~~-----------------~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws-~~g 156 (443)
T PF04053_consen 102 VK-SIKLP-----------------FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWS-DDG 156 (443)
T ss_dssp T------S-----------------S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE--TTS
T ss_pred ce-EEcCC-----------------cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEE-CCC
Confidence 10 11110 02333322 777777664 48999999999999998743 48999999 999
Q ss_pred CEEEEEeCCCeEEEEecccc--------------c---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 283 HLIYSGSDDNLCKVNSVLLL--------------T---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 283 ~~l~s~~~dg~i~vwd~~~~--------------~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
.+++..+.+ .+.+++...- . .....|.+.+|..+ -++.+. ...++.+--....
T Consensus 157 ~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT--------~~~lkYl~~Ge~~ 226 (443)
T PF04053_consen 157 ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT--------SNHLKYLVNGETG 226 (443)
T ss_dssp SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE---------TTEEEEEETTEEE
T ss_pred CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc--------CCeEEEEEcCCcc
Confidence 999988755 5666654321 1 22567788888776 333333 1234442112223
Q ss_pred EEEEEeeeEEEeeecccC
Q 017421 346 TFYSFMVHILFSGYLHND 363 (372)
Q Consensus 346 ~~~~~~~h~~~~~~~~~~ 363 (372)
.+..+.-.+.+.||+-+.
T Consensus 227 ~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 227 IIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp EEEE-SS--EEEEEETTT
T ss_pred eEEEcCCceEEEEEEccC
Confidence 455666666777777643
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.00032 Score=66.68 Aligned_cols=213 Identities=10% Similarity=-0.040 Sum_probs=132.8
Q ss_pred CceeEeeeeeCCCCCccccCCCCceEEEEECCCC------------CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc
Q 017421 103 DCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADG------------SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW 170 (372)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 170 (372)
...+.+.+....+....+..|+..|+.+.|.|.. -+||++...|.|.+||...+..... +..+..
T Consensus 34 hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~---l~~~~~ 110 (1062)
T KOG1912|consen 34 HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW---LSHSND 110 (1062)
T ss_pred CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh---hcCCCc
Confidence 3445566666666677788899999999998742 2467788889999999987643333 556677
Q ss_pred ceEEEEECC---CC-CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEE
Q 017421 171 TVTDTSLSP---DQ-RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAG 245 (372)
Q Consensus 171 ~v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~ 245 (372)
++..+.|-+ +. ..|+.-.....+.+|+..+|+...... .. .....|+.+.| |.+.+...
T Consensus 111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~--ys--------------~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD--YS--------------HEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--cC--------------CcceeeeeeCCCCcceEEEE
Confidence 889999877 33 456666777899999999998633322 11 12567788888 55666666
Q ss_pred eCCCeEEEEECCC-------CeEEEEeecCCC------------C-------------eEEEEEeCCCCCEEEEEeCCCe
Q 017421 246 SSDDCIYVYDLEA-------NKLSLRILAHTS------------D-------------VNTVCFGDESGHLIYSGSDDNL 293 (372)
Q Consensus 246 s~dg~i~iwd~~~-------~~~~~~~~~~~~------------~-------------v~~~~~sp~~~~~l~s~~~dg~ 293 (372)
+..|.+.+-+.-. ++..+.-..|.. . .-.++|+ |.-+.++-......
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~-p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS-PHWRNILFITFPRE 253 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC-hhhhceEEEEeccc
Confidence 6667666655421 222222222221 0 1125677 44443444446778
Q ss_pred EEEEeccccc------CCCCCeeEEEeccCCC--eEEEEeeeeEEEeeceEEEeec
Q 017421 294 CKVNSVLLLT------RSINPCNKYLFNPCNK--YLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 294 i~vwd~~~~~------~~~~~v~~~~~s~~g~--~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
+.++|++... -..+.+.-+.|-|+++ .|++.. -||.+.+|--
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH------~nG~ltirvr 303 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLH------SNGRLTIRVR 303 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEe------cCCeEEEEEe
Confidence 9999987321 2333444566667754 455553 3677777743
No 321
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.16 E-value=0.00051 Score=63.27 Aligned_cols=140 Identities=13% Similarity=0.058 Sum_probs=90.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (372)
+..+++++.++.|..+|..+++.+.......... ..... ++..+++++.++.+..+|..+|+.........
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~---- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS---- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc----
Confidence 6678888889999999999887665433222211 11222 46778888899999999999998754332211
Q ss_pred cceeccCCCCccccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCe-----EEEEEeCCCCCEEEEEe
Q 017421 216 LDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDV-----NTVCFGDESGHLIYSGS 289 (372)
Q Consensus 216 ~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~~l~s~~ 289 (372)
.+.+ ... .+..++.++.++.+..||.++++.+..+......+ .+.... + ..++.+.
T Consensus 136 -------------~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~ 197 (377)
T TIGR03300 136 -------------EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGF 197 (377)
T ss_pred -------------eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEEC
Confidence 1111 111 24567777889999999999998877765332211 112222 2 3667777
Q ss_pred CCCeEEEEecccc
Q 017421 290 DDNLCKVNSVLLL 302 (372)
Q Consensus 290 ~dg~i~vwd~~~~ 302 (372)
.++.+..+|+++.
T Consensus 198 ~~g~v~ald~~tG 210 (377)
T TIGR03300 198 AGGKLVALDLQTG 210 (377)
T ss_pred CCCEEEEEEccCC
Confidence 8888888887643
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=8.8e-07 Score=81.66 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=109.1
Q ss_pred CccccCCCCceEEEEECC-CCCEEEEEe----CCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421 117 PWPVDQTTSRAYVSQFSA-DGSLFVAGF----QASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (372)
Q Consensus 117 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~----~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 189 (372)
.....+|....++++|++ |.+.||+|- .|..+.|||+.+.- +........+......+++|..+.+++++|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 344567888999999999 667788773 35689999998762 11111111122334568888888899999988
Q ss_pred CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEE-CCCCe-EEEEee
Q 017421 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYD-LEANK-LSLRIL 266 (372)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd-~~~~~-~~~~~~ 266 (372)
...+.++|++....... .+ .+..+..+..+| .+.++++-. ||.|.+|| .+.-+ ++..+.
T Consensus 175 sr~~~ifdlRqs~~~~~-sv----------------nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~ 236 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVS-SV----------------NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIIL 236 (783)
T ss_pred cchhhhhhhhhhhhhhh-hh----------------hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHh
Confidence 88999999984332111 11 111455667777 667777665 99999999 33322 222222
Q ss_pred cCC----CCeEEEEEeCCCCCEEEEEeC-CCeEEEEecc
Q 017421 267 AHT----SDVNTVCFGDESGHLIYSGSD-DNLCKVNSVL 300 (372)
Q Consensus 267 ~~~----~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~~ 300 (372)
..+ ..+..++|+|....++++... .++|+++|+.
T Consensus 237 ~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 237 RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 222 248999999655556666665 4789999986
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=2e-06 Score=79.35 Aligned_cols=182 Identities=15% Similarity=0.111 Sum_probs=120.1
Q ss_pred CCceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC-CCCEEEEEeC----CCeEEEE
Q 017421 124 TSRAYVSQFSAD--GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP-DQRHLVYASM----SPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~vw 196 (372)
...+.|+++..+ ...+++|..+|.|-+-.+....-- ......++..+.++++|++ |.++||.|-. |..+.+|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 456777776554 346788999999999887654222 1223456667899999999 6677777743 5679999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVC 276 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 276 (372)
|+.++-..+ .+...|... ......+++|..+.+++++|.....+.++|++.... ....-.+..+..+.
T Consensus 135 di~s~ltvP-------ke~~~fs~~----~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 135 DINSLLTVP-------KESPLFSSS----TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGIT 202 (783)
T ss_pred ecccccCCC-------ccccccccc----cccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccce
Confidence 998763211 111122221 122456889988889999999888999999984321 11111234566777
Q ss_pred EeCCCCCEEEEEeCCCeEEEEe-ccccc-------C----CCCCeeEEEeccCCC
Q 017421 277 FGDESGHLIYSGSDDNLCKVNS-VLLLT-------R----SINPCNKYLFNPCNK 319 (372)
Q Consensus 277 ~sp~~~~~l~s~~~dg~i~vwd-~~~~~-------~----~~~~v~~~~~s~~g~ 319 (372)
+.|-.+.++++-. ||.|.+|| .+..+ . ....+..++|+|...
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 8844788888765 99999999 43221 1 123489999999743
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00077 Score=67.29 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=95.7
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d 248 (372)
...|.++.|..+...++.+...|.|.+.|.++......... ...|.+++|+||+..++..+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v-----------------d~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV-----------------DNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec-----------------cCceEEEeecCCCcEEEEEeCC
Confidence 35799999999999999999999999998887765333321 2379999999999999988887
Q ss_pred CeEEEEEC----CC-------------------CeEEEEeecC---------------------CCCeEEEEEeCCCCCE
Q 017421 249 DCIYVYDL----EA-------------------NKLSLRILAH---------------------TSDVNTVCFGDESGHL 284 (372)
Q Consensus 249 g~i~iwd~----~~-------------------~~~~~~~~~~---------------------~~~v~~~~~sp~~~~~ 284 (372)
+++.+-+- -. |+....+.+. .+.-+.+.|- .||.+
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~ 209 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEY 209 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcE
Confidence 77665432 00 1100111110 1122458998 99999
Q ss_pred EEEEe----CC-CeEEEEecc-ccc----CCCCCeeEEEeccCCCeEEEE
Q 017421 285 IYSGS----DD-NLCKVNSVL-LLT----RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 285 l~s~~----~d-g~i~vwd~~-~~~----~~~~~v~~~~~s~~g~~l~~~ 324 (372)
+|+.. .+ ..|+|||.. .+. .....-.+++|-|.|..+++-
T Consensus 210 fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred EEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeee
Confidence 99842 23 789999987 111 223334778999999998875
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.99 E-value=0.00014 Score=52.80 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=65.8
Q ss_pred eEEEEEeCCCC---CEEEEEeCCCeEEEEeccccc---CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 272 VNTVCFGDESG---HLIYSGSDDNLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 272 v~~~~~sp~~~---~~l~s~~~dg~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
|+++++.+-++ +.|++|+.|..||+|+-..+. .....|++++-...+++.++...+++.+|+...++|.+.+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~ 81 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN 81 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC
Confidence 66777764333 589999999999999876432 456788888888888888888899999999999999999988
Q ss_pred EEEEEeee
Q 017421 346 TFYSFMVH 353 (372)
Q Consensus 346 ~~~~~~~h 353 (372)
.+.++...
T Consensus 82 ~~~~~~~~ 89 (111)
T PF14783_consen 82 QVTSMAFY 89 (111)
T ss_pred CeEEEEEE
Confidence 77666554
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.00079 Score=63.88 Aligned_cols=178 Identities=11% Similarity=-0.012 Sum_probs=108.3
Q ss_pred ECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC----eEEEEECCCCceeee
Q 017421 132 FSADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP----IVHIVDVGSGTMESL 206 (372)
Q Consensus 132 ~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~ 206 (372)
++|||+.+. +.-..+.+.+.|.++.+...+.... + ....+.++|+++++++.+.+. .+...+.........
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-g---npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-G---NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-C---CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 455666543 2233456777888776444443322 2 456789999999998886422 233332222111000
Q ss_pred cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEeecCCCCeEEEEEeCCC
Q 017421 207 ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-----NKLSLRILAHTSDVNTVCFGDES 281 (372)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~sp~~ 281 (372)
+... .+ ..+.++|++... .++.|.+.|.++ ...+..+. -......+.++ ||
T Consensus 276 fni~------------------~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vS-PD 331 (635)
T PRK02888 276 FNIA------------------RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTS-PD 331 (635)
T ss_pred EchH------------------HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEEC-CC
Confidence 0000 00 133457876665 367899999998 34555554 44567899999 99
Q ss_pred CCEEEEEe-CCCeEEEEecccccC-----------------CCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeeccc
Q 017421 282 GHLIYSGS-DDNLCKVNSVLLLTR-----------------SINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFL 343 (372)
Q Consensus 282 ~~~l~s~~-~dg~i~vwd~~~~~~-----------------~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~ 343 (372)
|+++++++ .+.++.|+|+.+++. ........+|.++|....+. - -|++|-.||+..
T Consensus 332 GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytsl-----f-~dsqv~kwn~~~ 405 (635)
T PRK02888 332 GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTL-----F-LDSQIVKWNIEA 405 (635)
T ss_pred CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeE-----e-ecceeEEEehHH
Confidence 99887765 589999999985431 12233567888888744333 2 488999999877
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0014 Score=63.24 Aligned_cols=168 Identities=11% Similarity=0.084 Sum_probs=104.4
Q ss_pred cccCCCCc-eEEEEECCCCCEEEEEeCCC-----cEEEEeCCCC------eEEE--Eee--ecccCCcceEEEEECCCCC
Q 017421 119 PVDQTTSR-AYVSQFSADGSLFVAGFQAS-----QIRIYDVERG------WKIQ--KDI--LAKSLRWTVTDTSLSPDQR 182 (372)
Q Consensus 119 ~~~~~~~~-v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~------~~~~--~~~--~~~~~~~~v~~~~~~~~~~ 182 (372)
-+..+... |..+-...+..+|++.+.|+ .|+||+++.- .++. ... ..+....++.+++.+.+-+
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~ 138 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK 138 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc
Confidence 34444444 44444444446777766554 4899998743 1121 111 1122356788999999999
Q ss_pred EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE-
Q 017421 183 HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL- 261 (372)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~- 261 (372)
.+|+|-.+|.|..+.=+--+-+.. +....+ ....+|+.+.+..+++.++....-..|.+|.+....+
T Consensus 139 ~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~-----------~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~ 206 (933)
T KOG2114|consen 139 TIVCGFTNGLVICYKGDILRDRGS-RQDYSH-----------RGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPS 206 (933)
T ss_pred EEEEEecCcEEEEEcCcchhcccc-ceeeec-----------cCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcc
Confidence 999999999998885321111111 111111 1235899999999887733333346799999984442
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 262 SLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
...+..|+.++.|..++++.+++++++ +..+.+||..
T Consensus 207 ~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd 243 (933)
T KOG2114|consen 207 LKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSD 243 (933)
T ss_pred eeeeccCCccceeeecCCCCccEEEec--CceEEEEcCC
Confidence 444777888999999985555455544 4569999876
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=0.0057 Score=51.12 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (372)
..+++.|+..+.+.-.|..++....+..... +|-+-+.- -|++++.|+..|.+++.+.++|............
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~----RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV----RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc----eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 5677888888999999998886665533322 22222111 3678999999999999999999654333322211
Q ss_pred cceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeE
Q 017421 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLC 294 (372)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i 294 (372)
. ......+++.++..|+.|+..+..|.++..++...+-..+--.+-+..|.++.+.++. ..|.+
T Consensus 96 -------------k-~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~-t~G~v 159 (354)
T KOG4649|consen 96 -------------K-VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI-TAGAV 159 (354)
T ss_pred -------------c-cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe-ccceE
Confidence 1 1234567899999999999999999999888887664333333445553355544443 33433
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00062 Score=65.46 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=62.2
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 199 (372)
.+-.+.+++|+|..-.|+.|-.-|.+.+|...+.+.- .....|+.+|..+.|+++|..++++..-|.+.+|...
T Consensus 58 ~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 58 YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceehhhhccChHHHHHhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3455678999999988999988999999998765332 2356788899999999999999999999999999875
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.86 E-value=0.0037 Score=53.30 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEe-eecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421 135 DGSLFVAGFQASQIRIYDVERGWKIQKD-ILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (372)
Q Consensus 135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (372)
++..+++++.++.|..+|..+++.+... .................++..++.+..++.|..+|+++|+.+.........
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 4556677778889999999999777663 222111111122223334788888888999999999999875544432111
Q ss_pred cccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 017421 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN 292 (372)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg 292 (372)
....+. ....+..-....++ .++.++.++. +.+ |+.+++.+.... ...+..+ .. .++..|+.++.++
T Consensus 155 ~~~~~~------~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~-~~~~~l~~~~~~~ 222 (238)
T PF13360_consen 155 GSSPIS------SFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PS-VDGGTLYVTSSDG 222 (238)
T ss_dssp SS--EE------EETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EE-CCCTEEEEEETTT
T ss_pred CCccee------eecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ce-eeCCEEEEEeCCC
Confidence 000000 00112222222344 6666676775 555 999998665333 2333332 33 5677888777999
Q ss_pred eEEEEeccccc
Q 017421 293 LCKVNSVLLLT 303 (372)
Q Consensus 293 ~i~vwd~~~~~ 303 (372)
.|..||+++.+
T Consensus 223 ~l~~~d~~tG~ 233 (238)
T PF13360_consen 223 RLYALDLKTGK 233 (238)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCC
Confidence 99999997643
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.77 E-value=0.0035 Score=61.76 Aligned_cols=146 Identities=12% Similarity=0.147 Sum_probs=92.6
Q ss_pred CCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC-------CCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 136 GSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD-------QRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 136 ~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
.++|+.- .....|+-.|++.|+.+..-.. +.. +.-..+.|+ ...-+.|-.+..+..||.+-.......
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~-~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDD-IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeec---CCC-cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 3444432 3456788889999876665322 221 223344443 234566777889999999864411111
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEE
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS 287 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s 287 (372)
. ....|. ......|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+ .||++|+.
T Consensus 569 ~-----~~k~Y~------~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt-~DGkwila 635 (794)
T PF08553_consen 569 S-----QSKQYS------SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVT-ADGKWILA 635 (794)
T ss_pred c-----cccccc------cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEec-CCCcEEEE
Confidence 0 001111 22367788877777 69999999999999943333334455667899999999 99999886
Q ss_pred EeCCCeEEEEec
Q 017421 288 GSDDNLCKVNSV 299 (372)
Q Consensus 288 ~~~dg~i~vwd~ 299 (372)
.+ +..|.+++.
T Consensus 636 Tc-~tyLlLi~t 646 (794)
T PF08553_consen 636 TC-KTYLLLIDT 646 (794)
T ss_pred ee-cceEEEEEE
Confidence 65 566777775
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.023 Score=52.27 Aligned_cols=199 Identities=11% Similarity=0.075 Sum_probs=131.2
Q ss_pred CceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC---CCeEEEEECCC
Q 017421 125 SRAYVSQFSADGSLF-VAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM---SPIVHIVDVGS 200 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~ 200 (372)
....+++.++.++.+ ++...+..|.+.|.............. ....++++|+++.+..+.. ++.+.+.|..+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~----~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL----GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc----CCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 345577888888754 444556899999977765554433222 5778999999988877765 67888888888
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeEEE-E----eecCCCCeEE
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVYDLEANKLSL-R----ILAHTSDVNT 274 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iwd~~~~~~~~-~----~~~~~~~v~~ 274 (372)
++......... .+ ..++++|+|+.++... .++.|.+.|........ . .. -......
T Consensus 150 ~~~~~~~~vG~----------------~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~ 211 (381)
T COG3391 150 NKVTATIPVGN----------------TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAG 211 (381)
T ss_pred CeEEEEEecCC----------------Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCce
Confidence 77644422110 13 7899999999665554 68899999977665543 1 11 2234467
Q ss_pred EEEeCCCCCEEEEEeCC---CeEEEEeccccc--CCCC-----CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccc
Q 017421 275 VCFGDESGHLIYSGSDD---NLCKVNSVLLLT--RSIN-----PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLL 344 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~d---g~i~vwd~~~~~--~~~~-----~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~ 344 (372)
+.++ ++|..+.+.... +.+...|..+.. .... ....+..+|+|+.+.+... +.+.+.+-|..+.
T Consensus 212 i~v~-~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~ 285 (381)
T COG3391 212 IAVD-PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATD 285 (381)
T ss_pred EEEC-CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCC
Confidence 8888 888876665443 588888877422 1111 4566899999999887732 2455666666665
Q ss_pred eEEEEEe
Q 017421 345 RTFYSFM 351 (372)
Q Consensus 345 ~~~~~~~ 351 (372)
+......
T Consensus 286 ~v~~~~~ 292 (381)
T COG3391 286 RVVKTGP 292 (381)
T ss_pred ceeeeec
Confidence 5555443
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.75 E-value=0.0055 Score=56.22 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=103.1
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----cCCcceEEEEECC-----CC---CEEEEE
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SLRWTVTDTSLSP-----DQ---RHLVYA 187 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-----~~---~~l~~~ 187 (372)
....++|++++.| |=-++|+|..+|.+.|.|++....+....... .....|+++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4447899999997 55689999999999999998876666533222 1234577888863 33 468889
Q ss_pred eCCCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEE-EcCC-----------------C---CEEEEE
Q 017421 188 SMSPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLK-FSTD-----------------G---RELVAG 245 (372)
Q Consensus 188 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~-~sp~-----------------~---~~l~s~ 245 (372)
+..|.+.+|.+-- ..-.......... ..+.++|..+. |+.+ | +.++..
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~----------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT----------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE------------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc----------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 9999999998742 1111111111100 01222333332 2111 1 123334
Q ss_pred eCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeC----CCCCEEEEEeCCCeEEEEecccccC----------CCCCeeE
Q 017421 246 SSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGD----ESGHLIYSGSDDNLCKVNSVLLLTR----------SINPCNK 311 (372)
Q Consensus 246 s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp----~~~~~l~s~~~dg~i~vwd~~~~~~----------~~~~v~~ 311 (372)
..+..++++...+.+..++.....-.+..+.+-+ ..+..|++-..+|.|++|.+..++. ....+..
T Consensus 232 vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 4468899999988776665543222333344420 3566788888999999999875541 1123456
Q ss_pred EEeccCCCeEEEEe
Q 017421 312 YLFNPCNKYLIIYL 325 (372)
Q Consensus 312 ~~~s~~g~~l~~~~ 325 (372)
..++++|+.++-.+
T Consensus 312 ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 312 SSISRNGDIFYWTG 325 (395)
T ss_dssp -EE-TTS-EEEE-S
T ss_pred cEECCCCCEEEEeC
Confidence 77889998776553
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=7.3e-05 Score=65.61 Aligned_cols=76 Identities=24% Similarity=0.290 Sum_probs=66.1
Q ss_pred CccccEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 225 GYSFGIFSLKFSTDGR-ELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 225 ~h~~~i~~~~~sp~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
++...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-.+.++|+.|...|.|.|||++.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 3556899999999877 6788899999999999999998888877 88999999855667888888999999999984
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.73 E-value=0.0022 Score=60.94 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=64.9
Q ss_pred CcEEEEeCCC----CeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CCeEEEEECCCCceeeecceeecccccceec
Q 017421 146 SQIRIYDVER----GWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (372)
Q Consensus 146 g~i~vwd~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
+.|.|.|..+ +..+...+. -...+..+.++|||+++++++. ++.|.|.|+.+.+......+ .....+.-.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-~~~~~vvaev 371 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-KPRDAVVAEP 371 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-CccceEEEee
Confidence 4577777766 322333222 2225789999999999887765 89999999987553110000 0000000000
Q ss_pred cCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 221 ADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 221 ~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
.-.......+|.++|+...+-..|..|-.||+.+
T Consensus 372 ----evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ----ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ----ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0011345678999999888888999999999876
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.00029 Score=66.27 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=88.9
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d 248 (372)
...|.--+++..+++++.|+..|.+++|+-.++......+- +-...+..+..+++..++|.|+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~---------------~~~~~~~~~~vs~~e~lvAagt~~ 97 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE---------------GATGITCVRSVSSVEYLVAAGTAS 97 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc---------------CccceEEEEEecchhHhhhhhcCC
Confidence 33455556677889999999999999999887765433321 122356677788988899999999
Q ss_pred CeEEEEECCCCeEEEE-----e-ecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 249 DCIYVYDLEANKLSLR-----I-LAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 249 g~i~iwd~~~~~~~~~-----~-~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
|.|.++.+....+... . ..|...|++++|+ +++..+++|...|+|..-.+.+
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEeehhhccCCCcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 9999998876432111 1 2378899999999 9999999999999998887764
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.70 E-value=0.0037 Score=61.61 Aligned_cols=135 Identities=14% Similarity=0.168 Sum_probs=88.1
Q ss_pred CCCEEEEE-eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC-------CCEEEEEeCCCeE
Q 017421 180 DQRHLVYA-SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------GRELVAGSSDDCI 251 (372)
Q Consensus 180 ~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-------~~~l~s~s~dg~i 251 (372)
+.++|+.. .....|+-.|++.|+++........ .+|..+ .|+ ..-.+.|-.+..+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------------~~v~~~--~p~~K~aqlt~e~tflGls~n~l 554 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------------IPVVDI--APDSKFAQLTNEQTFLGLSDNSL 554 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------------cceeEe--cccccccccCCCceEEEECCCce
Confidence 34444443 3457899999999998665553321 123333 342 2234566667889
Q ss_pred EEEECCCCe--EEEE-ee--cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCCCe
Q 017421 252 YVYDLEANK--LSLR-IL--AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCNKY 320 (372)
Q Consensus 252 ~iwd~~~~~--~~~~-~~--~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g~~ 320 (372)
..||.+-.. ++.. .. ......+|++-+ .+| +||+|+.+|.||+||.- .+.+...+|..+..+.||++
T Consensus 555 friDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt-~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 555 FRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT-EDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred EEeccCCCCCceeeccccccccCCCceEEEec-CCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence 999998532 2211 11 234466777776 555 79999999999999953 34467889999999999999
Q ss_pred EEEEeeeeEEEee
Q 017421 321 LIIYLILVISIYS 333 (372)
Q Consensus 321 l~~~~~~~~~~~d 333 (372)
|++.+...+-+++
T Consensus 633 ilaTc~tyLlLi~ 645 (794)
T PF08553_consen 633 ILATCKTYLLLID 645 (794)
T ss_pred EEEeecceEEEEE
Confidence 9988644444433
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.67 E-value=0.049 Score=50.83 Aligned_cols=158 Identities=19% Similarity=0.191 Sum_probs=89.1
Q ss_pred ceEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC---------
Q 017421 126 RAYVSQFSADGSLFVAG-FQAS----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP--------- 191 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 191 (372)
.+..+.++|||+++|.+ +..| .|+|+|+.+++.+...+... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34467899999999865 3334 59999999996665433222 123499999998887765433
Q ss_pred --eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCC----eE
Q 017421 192 --IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEAN----KL 261 (372)
Q Consensus 192 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~----~~ 261 (372)
.|+.|.+.++............ .......+..++|+++|+..+.. ..+.+.|+..+ ..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~------------~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPD------------EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TT------------CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred CcEEEEEECCCChHhCeeEEeecC------------CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 3777888766533111111110 11125678899999988754332 34888888874 23
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEecc
Q 017421 262 SLRILAHTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVL 300 (372)
Q Consensus 262 ~~~~~~~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~ 300 (372)
...+......+....-+ ..+.+++... .++.|.-.++.
T Consensus 269 ~~~l~~~~~~~~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~ 309 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDH-HGDRLYILTNDDAPNGRLVAVDLA 309 (414)
T ss_dssp EEEEEESSSS-EEEEEE-ETTEEEEEE-TT-TT-EEEEEETT
T ss_pred cEEEeCCCCceEEEEEc-cCCEEEEeeCCCCCCcEEEEeccc
Confidence 33444344444443333 3444544443 23556555654
No 339
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.025 Score=48.44 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=125.7
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECC
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVG 199 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 199 (372)
+.+-...+.++.|+|+.+.|++......-.|+=...|+.+.... +.+.. ..-.+.+.-++++.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 45556679999999999988887777777777666776666543 22222 35677888788877777778888888877
Q ss_pred CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE---EEEeecC-------C
Q 017421 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL---SLRILAH-------T 269 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~-------~ 269 (372)
.+.......... +......+.....-.++|+|..+.|..+-+..-+.||.+..... ......+ -
T Consensus 159 ~~t~~~~~~~~~------i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~ 232 (316)
T COG3204 159 ADTTVISAKVQK------IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV 232 (316)
T ss_pred CCccEEeccceE------EeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe
Confidence 654321211110 00000001134678899999988888887776677776653321 1111111 2
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------c-------ccCCCCCeeEEEeccCCCeEEEEe
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------L-------LTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~-------~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
..|.++.|+++.+.+|+.+.+++.+.-.|.. . +.........++..++|...+++-
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 3577889998888899888888887777764 1 112223446678888887766663
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00035 Score=65.00 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=65.4
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceE-EEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVT-DTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 201 (372)
.+..+.-+.|+|.-.++|.+..+|.|.+..+. -+++.. ..-+..+++ +++|.|||+.|++|-.||+|++.|+.++
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwt---ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWT---IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEe---ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 45678889999999999999999999999988 434443 332333565 9999999999999999999999999998
Q ss_pred ceeee
Q 017421 202 TMESL 206 (372)
Q Consensus 202 ~~~~~ 206 (372)
.....
T Consensus 95 ~~l~~ 99 (665)
T KOG4640|consen 95 GRLVS 99 (665)
T ss_pred Cceec
Confidence 76443
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00016 Score=69.39 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=86.5
Q ss_pred eEEEEECCCCCEEEEEeC----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 172 VTDTSLSPDQRHLVYASM----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 172 v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
.+-.+|+|...++++++. .|.|.||- ++|++..-.. ....+++++|+|..-.|+.|-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cceehhhhccChHHHHHhhccc
Confidence 445689999999988764 56777774 3444322211 2225778999999888899988
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 248 DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
-|.+.+|...+.+.-.....|..+|..+.|| ++|..++++..-|.+.+|...
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS-~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWS-HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEec-CCCCeEEEcCCCceeEEEEee
Confidence 9999999998877655556799999999999 999999999999999999875
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0017 Score=60.19 Aligned_cols=144 Identities=21% Similarity=0.188 Sum_probs=87.4
Q ss_pred CCCceEEEEECCCCCEEEEE-eCCCc--EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-CC--eEEEE
Q 017421 123 TTSRAYVSQFSADGSLFVAG-FQASQ--IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-SP--IVHIV 196 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vw 196 (372)
..+.-...+|+|||++|+.. ..||. |.++|+.... ...+. ...+.-..-.|+|||+.|+..+. .| .|.++
T Consensus 236 ~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt---~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 236 FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLT---NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecc---cCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 34445556899999887654 55554 6666777664 22222 22223347789999999988765 33 57777
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCeEEEEeecCCCCeE
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDC--IYVYDLEANKLSLRILAHTSDVN 273 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~v~ 273 (372)
+.+.+....+..... .-..-.|+|||++|+..+. +|. |.+.|+.++...+.+. +.....
T Consensus 312 ~~~g~~~~riT~~~~-----------------~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e 373 (425)
T COG0823 312 DLEGSQVTRLTFSGG-----------------GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNE 373 (425)
T ss_pred CCCCCceeEeeccCC-----------------CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCC
Confidence 887776533332111 1126779999999987664 344 7777776665433333 333334
Q ss_pred EEEEeCCCCCEEEEEe
Q 017421 274 TVCFGDESGHLIYSGS 289 (372)
Q Consensus 274 ~~~~sp~~~~~l~s~~ 289 (372)
...|. +++..++..+
T Consensus 374 ~ps~~-~ng~~i~~~s 388 (425)
T COG0823 374 SPSWA-PNGRMIMFSS 388 (425)
T ss_pred CCCcC-CCCceEEEec
Confidence 55666 7777666544
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.64 E-value=0.00023 Score=40.59 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=33.6
Q ss_pred CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEe
Q 017421 259 NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNS 298 (372)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd 298 (372)
+++...+..|...|.++.|+ +++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFS-PDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEEC-CCCCEEEEecCCCeEEEcC
Confidence 34566677888999999999 7789999999999999996
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.59 E-value=0.06 Score=49.55 Aligned_cols=212 Identities=14% Similarity=0.136 Sum_probs=113.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE----------------------------------------EEeeec
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKI----------------------------------------QKDILA 165 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------~~~~~~ 165 (372)
.|..+.|+++..-|++|...|.|.||.....+.- ......
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999999888999999999999876432111 001111
Q ss_pred ccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC-----CC-
Q 017421 166 KSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-----DG- 239 (372)
Q Consensus 166 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-----~~- 239 (372)
...+++|++++.+ |=-+++.|..+|.+.|.|++....+......... ........++++.|.. |+
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~--------~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESF--------LSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----------T-SS----EEEEEEEEEE-TTSSS
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccc--------cccccccCeeEEEEEEEecCCCcc
Confidence 2335689999997 5558999999999999999988775543333200 0011334677888863 33
Q ss_pred --CEEEEEeCCCeEEEEECC--C-Ce----EEEEeecCCCCeEEEE-EeCCCC-------------------CEEEEEeC
Q 017421 240 --RELVAGSSDDCIYVYDLE--A-NK----LSLRILAHTSDVNTVC-FGDESG-------------------HLIYSGSD 290 (372)
Q Consensus 240 --~~l~s~s~dg~i~iwd~~--~-~~----~~~~~~~~~~~v~~~~-~sp~~~-------------------~~l~s~~~ 290 (372)
-.+++|+..|.+.+|.+. . +. .......+.++|..+. ++..+| +-++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 467899999999999874 1 21 1111124556666554 321111 12344445
Q ss_pred CCeEEEEeccccc----CCCC--CeeEEEecc-----CCCeEEEEeeeeEEEeeceEEEeecccceEEEEEee
Q 017421 291 DNLCKVNSVLLLT----RSIN--PCNKYLFNP-----CNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFMV 352 (372)
Q Consensus 291 dg~i~vwd~~~~~----~~~~--~v~~~~~s~-----~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~~ 352 (372)
+..++++.+.+.+ .... ....+.+-+ .+..|++- .-++.++++.+...+++..+..
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l------~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL------FNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE------ETTSEEEEEETTT--EEEEEE-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE------ECCCcEEEEECCCchHhhcccC
Confidence 7779998876432 1112 223344421 22222222 1468899999888888877655
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.064 Score=49.85 Aligned_cols=178 Identities=13% Similarity=0.113 Sum_probs=91.8
Q ss_pred EEECCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 130 SQFSADGSLFVAGFQA----------S-QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 130 ~~~s~~~~~l~~~~~d----------g-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
++.+|.|..+|....+ . .|.||+... ..+....... +.+.++.|+.+.. |++...||.+++||+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~~---~~iv~~~wt~~e~-LvvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWDS---GRIVGMGWTDDEE-LVVVQSDGTVRVYDL 108 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEECC---CCEEEEEECCCCe-EEEEEcCCEEEEEeC
Confidence 4566666666655333 1 489999654 4555533322 5799999998655 556678999999998
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEe---ec-----CC
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRI---LA-----HT 269 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~---~~-----~~ 269 (372)
.... .......... .+-....+....+..+| ++.-+.++.+.+.+--... ....+ .. +.
T Consensus 109 ~G~~---~fsl~~~i~~-------~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~ 176 (410)
T PF04841_consen 109 FGEF---QFSLGEEIEE-------EKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHW 176 (410)
T ss_pred CCce---eechhhhccc-------cCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCccccccc
Confidence 6333 1111110000 00001122223333345 3333344544443221111 11111 11 00
Q ss_pred C-CeEE-EEEeCCCCCEEEEEeCCCeEEEEeccccc--CCCCCeeEEEeccCCCeEEEEe
Q 017421 270 S-DVNT-VCFGDESGHLIYSGSDDNLCKVNSVLLLT--RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 270 ~-~v~~-~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
. .... ..++ .+....+....++.+.+.+-.... ...+++..++.||+|+++|..+
T Consensus 177 ~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t 235 (410)
T PF04841_consen 177 WPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFT 235 (410)
T ss_pred ccccccceEee-cCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEE
Confidence 0 1111 2344 555556666666777755543321 2346899999999999998775
No 346
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.57 E-value=0.026 Score=52.34 Aligned_cols=192 Identities=11% Similarity=-0.006 Sum_probs=104.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECC--CCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSP--DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (372)
+..++++..++.|.-+|..+++.+.......... ... ..-+| .+..++.++.+|.+..+|..+|+..-........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~-~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL-TLR-GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc-ccc-CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 4456677888999999999997766533211100 000 00111 2345677788999999999988764332211110
Q ss_pred cccceeccCCCCccccEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421 214 DGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD 291 (372)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d 291 (372)
... .......+.-+| .+..++.++.+|.+..+|..+++.+..... .....+.. .+..++.++.+
T Consensus 238 ~~~---------~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~---~~~~vy~~~~~ 303 (394)
T PRK11138 238 GAT---------EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV---DGGRIYLVDQN 303 (394)
T ss_pred Ccc---------chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE---ECCEEEEEcCC
Confidence 000 000001111122 245666777889999999999987655432 11122222 35567777788
Q ss_pred CeEEEEecccccC----C---CCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEEe
Q 017421 292 NLCKVNSVLLLTR----S---INPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 292 g~i~vwd~~~~~~----~---~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~~ 351 (372)
|.+..+|..+.+. . .....+... -++ .++++. .|+.+...|..+|+.+..+.
T Consensus 304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g-~l~v~~------~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 304 DRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNG-YLVVGD------SEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CeEEEEECCCCcEEEcccccCCCcccCCEE-ECC-EEEEEe------CCCEEEEEECCCCCEEEEEE
Confidence 8888888764321 0 011122222 133 333332 46777777777777766654
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.55 E-value=0.0043 Score=57.74 Aligned_cols=132 Identities=14% Similarity=0.046 Sum_probs=72.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~ 250 (372)
.+..+.++|+|+.+++ +.+|...+|......... .+.....+|.+.++ +|+-....+
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~---------------------~G~g~~~vw~~~n~-yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA---------------------FGSGLSFVWSSRNR-YAVLESSST 90 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE---------------------EEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc---------------------cCceeEEEEecCcc-EEEEECCCe
Confidence 5789999999999988 457888888743322211 12456688998554 666666888
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc----CCCCCeeEEEeccCCCeEEEEee
Q 017421 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT----RSINPCNKYLFNPCNKYLIIYLI 326 (372)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~v~~~~~s~~g~~l~~~~~ 326 (372)
|.++.--+.+....+... ..+.. .- . |.+|...+.+ .|.+||+.+.+ -...+|..+.|+++|.+++..+.
T Consensus 91 I~I~kn~~~~~~k~i~~~-~~~~~--If-~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 91 IKIYKNFKNEVVKSIKLP-FSVEK--IF-G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEEETTEE-TT-----S-S-EEE--EE---SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S
T ss_pred EEEEEcCccccceEEcCC-cccce--EE-c-CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC
Confidence 999733222222233321 12333 33 2 7877777655 89999998543 12234899999999999998865
Q ss_pred eeEEE
Q 017421 327 LVISI 331 (372)
Q Consensus 327 ~~~~~ 331 (372)
..+.+
T Consensus 165 ~~i~i 169 (443)
T PF04053_consen 165 DSIYI 169 (443)
T ss_dssp -SEEE
T ss_pred CeEEE
Confidence 55444
No 348
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00057 Score=63.63 Aligned_cols=85 Identities=13% Similarity=0.194 Sum_probs=72.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEeccccc----
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVN-TVCFGDESGHLIYSGSDDNLCKVNSVLLLT---- 303 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---- 303 (372)
.+.-+.|+|.-.+||++..+|.|.+..+. .+.+.++.-|...++ +++|. |||++||+|-.||+|++-|+.+..
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~-~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWR-PDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeec-CCCCEEEEEecCCeEEEEEccCCCceec
Confidence 67889999999999999999999999988 888888887777787 99999 999999999999999999997543
Q ss_pred ---CCCCCeeEEEec
Q 017421 304 ---RSINPCNKYLFN 315 (372)
Q Consensus 304 ---~~~~~v~~~~~s 315 (372)
.....|..+-|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 223456666665
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.53 E-value=0.015 Score=56.31 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=87.5
Q ss_pred CCceEEEEECCCCCEEEEEe------CCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-CeEE
Q 017421 124 TSRAYVSQFSADGSLFVAGF------QAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-PIVH 194 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~ 194 (372)
...+...+++|+|+.++... .|. .|.+++.... . ... ..+. ..+.-.|+|||+.+.+.... ..++
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~l--t~g~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQV--LEGH--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eee--ecCC--CCCCceECCCCCceEEEecCcceEE
Confidence 34678899999999987654 233 5556564322 2 221 1222 37788999998888776543 2222
Q ss_pred EE-----------ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE---EECCCCe
Q 017421 195 IV-----------DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV---YDLEANK 260 (372)
Q Consensus 195 vw-----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i---wd~~~~~ 260 (372)
+. ++..+.... .....|..+.|||||..++... ++.|.+ -....|.
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~-------------------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS-------------------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred EeccCCCceEEEEeccCchhhh-------------------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 22 332222110 0123799999999999888766 477776 4434453
Q ss_pred E-E---EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 261 L-S---LRILA-HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 261 ~-~---~~~~~-~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
. + ..+.. -...+.++.|. .++.++ ++..++.-.+|.+.
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~-~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWR-TGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred eeecccEEeecccCCccccceEe-cCCEEE-EEecCCCCceEEEe
Confidence 1 1 11222 23346889998 777754 55555555566654
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.075 Score=48.96 Aligned_cols=198 Identities=15% Similarity=0.124 Sum_probs=125.4
Q ss_pred ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCeEEEEECCCCce
Q 017421 126 RAYVSQFSADGSLFVAG-FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPIVHIVDVGSGTM 203 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 203 (372)
....+...+++..+.+. .....+.+.+.. ........ ..+. .....+..++.+..+... ..++.|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~-~~g~-~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSL-SVGG-VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeec-cCCC-ccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 45567788888555443 222345555554 22222111 1111 345678888888855544 4468899999776655
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeEEEEeecCCCCeEEEEEeCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKLSLRILAHTSDVNTVCFGDE 280 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 280 (372)
........ ....++++|+++.+..+.. ++++.+.|-.+++.......-..+ ..++++ |
T Consensus 109 ~~~~~vG~-----------------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~-p 169 (381)
T COG3391 109 LGSIPVGL-----------------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD-P 169 (381)
T ss_pred eeEeeecc-----------------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC-C
Confidence 33332211 4567899999987766554 688999999999888776543334 889999 8
Q ss_pred CCCEEEEEe-CCCeEEEEeccccc----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEE
Q 017421 281 SGHLIYSGS-DDNLCKVNSVLLLT----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFY 348 (372)
Q Consensus 281 ~~~~l~s~~-~dg~i~vwd~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~ 348 (372)
+|..++... .++.|.+.|..... ........+.++|+|..+.+..... +++.+..-|..++....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---GSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC---CCceEEEEeCCCceEEE
Confidence 898666655 78899999976331 1223447789999999887764322 13456666666555444
No 351
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00039 Score=62.04 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=61.7
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-cc--------------------CCCCCeeEEEeccCCCeEEEEe
Q 017421 267 AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-LT--------------------RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-~~--------------------~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
-|..+|.++.++ +.+..+++....|.|.-|.... ++ .......++.|+|+|..+++-.
T Consensus 142 lH~sPV~~i~y~-qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LHFSPVKKIRYN-QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cccCceEEEEee-ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 478899999999 8999999998899999998761 11 2334678999999999998764
Q ss_pred eeeEEEeeceEEEeecccceEEEEE
Q 017421 326 ILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 326 ~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
-|..|+++++.+|+.++.+
T Consensus 221 ------~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 221 ------PDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ------cccEEEEEEeccchhhhhh
Confidence 4788889999998876654
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.057 Score=47.79 Aligned_cols=181 Identities=18% Similarity=0.117 Sum_probs=99.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeee-cccC-CcceEEEEECCCCCEEEEEeC-----------C
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDIL-AKSL-RWTVTDTSLSPDQRHLVYASM-----------S 190 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~-----------d 190 (372)
++.+.++..-..+..|+++.. -+.+++++.+........ ..+. ......+...|+|.+.+.... -
T Consensus 65 p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 65 PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence 344444443333334444332 366777765544222111 1111 235678888999887665433 1
Q ss_pred CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-CCeEEEEECCC--C----e-EE
Q 017421 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-DDCIYVYDLEA--N----K-LS 262 (372)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-dg~i~iwd~~~--~----~-~~ 262 (372)
|.|+.+|. .+....... ++-...+.|+||||++.|+.+.. .+.|..|++.. + + ..
T Consensus 143 G~lyr~~p-~g~~~~l~~----------------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~ 205 (307)
T COG3386 143 GSLYRVDP-DGGVVRLLD----------------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF 205 (307)
T ss_pred ceEEEEcC-CCCEEEeec----------------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence 33444443 333322222 12235678999999987776654 47788888752 1 1 11
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCC-eEEEEecc-----cccCCCCCeeEEEec-cCCCeEEEE
Q 017421 263 LRILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVNSVL-----LLTRSINPCNKYLFN-PCNKYLIIY 324 (372)
Q Consensus 263 ~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-~i~vwd~~-----~~~~~~~~v~~~~~s-~~g~~l~~~ 324 (372)
..+....+..-.++.. .+|.+.+++..+| .|.+|+.. ...-....+++++|- |+.+.|.+.
T Consensus 206 ~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 206 VDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred EEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 2222344566678887 8888876554554 89999886 111233567888884 455555544
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.40 E-value=0.02 Score=41.74 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=63.7
Q ss_pred eEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421 127 AYVSQFSA---DG-SLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 127 v~~~~~s~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
|++|++.. || +-|++|+.|..|+||+-+. .+.... . ...|+++.-... ..++.+..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~---e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT---E-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe---c-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcce-
Confidence 56666544 33 5799999999999998553 333322 1 225777776655 66999999999999986332
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcC-C--C-CEEEEEeCCCeEE
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST-D--G-RELVAGSSDDCIY 252 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp-~--~-~~l~s~s~dg~i~ 252 (372)
..+.... ..+.++.+.. + | .-|++|-.+|.|-
T Consensus 74 ---lWRiKSK---------------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ---LWRIKSK---------------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeccC---------------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222211 1455555433 2 3 3688888888774
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.019 Score=52.88 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=88.0
Q ss_pred EECCCCCEEEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCE-------EEEEeC
Q 017421 176 SLSPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRE-------LVAGSS 247 (372)
Q Consensus 176 ~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~-------l~s~s~ 247 (372)
....+.++|+. +.....++-.|++.|+.+....+.. .|+-+.+.|+.+. -+.|=.
T Consensus 340 L~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~-----------------di~mv~~t~d~K~~Ql~~e~TlvGLs 402 (644)
T KOG2395|consen 340 LHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED-----------------DINMVDITPDFKFAQLTSEQTLVGLS 402 (644)
T ss_pred hhccccceEeeCCCCcCcceeeecccceeeeEeeccC-----------------CcceeeccCCcchhcccccccEEeec
Confidence 33345555543 4445668889999998765554322 3666666665421 134555
Q ss_pred CCeEEEEECCCCe--EEEEeecC----CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEec
Q 017421 248 DDCIYVYDLEANK--LSLRILAH----TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFN 315 (372)
Q Consensus 248 dg~i~iwd~~~~~--~~~~~~~~----~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s 315 (372)
+..|.-||.+-.. .+..-.+| ...-.|.+-. .+ -+|++||.+|.||+||.- .+.+...+|..+..+
T Consensus 403 ~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt 480 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT 480 (644)
T ss_pred CCceEEecccccCcceeeeeeccccccccccceeeec-CC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee
Confidence 7788899987322 12122222 2344555554 44 479999999999999963 345788899999999
Q ss_pred cCCCeEEEEeeeeEEE
Q 017421 316 PCNKYLIIYLILVISI 331 (372)
Q Consensus 316 ~~g~~l~~~~~~~~~~ 331 (372)
.+|++|++.+...+-+
T Consensus 481 adGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 481 ADGKWILATCKTYLLL 496 (644)
T ss_pred ccCcEEEEecccEEEE
Confidence 9999998776444433
No 355
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.30 E-value=0.037 Score=50.45 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=101.3
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-----cC---------CcceEEEEECCCCCEEEEEeC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-----SL---------RWTVTDTSLSPDQRHLVYASM 189 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~---------~~~v~~~~~~~~~~~l~~~~~ 189 (372)
...+....|||+|+.+|... ++.|.++++.++...+-..... +. -..-.++-||||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788899999999998876 4789999988773332111110 00 112357889999999988754
Q ss_pred C-CeEEEEE---CCCCce--eeecceeecccc--------cceeccCC-----------CCccccEEEEEEcCCCCEEEE
Q 017421 190 S-PIVHIVD---VGSGTM--ESLANVTEIHDG--------LDFSAADD-----------GGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 190 d-g~i~vwd---~~~~~~--~~~~~~~~~~~~--------~~~~~~~~-----------~~h~~~i~~~~~sp~~~~l~s 244 (372)
| ..|..+. ...... ........+..| ..+..... ..-...+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 2222222 211110 000000000000 00000000 012346888999999984443
Q ss_pred Ee--CC---CeEEEEECCCCeEEEEeec-CCCCe---EEEEEe-CCCCCEEEEEeCCCeEEEEecc-------cccCCCC
Q 017421 245 GS--SD---DCIYVYDLEANKLSLRILA-HTSDV---NTVCFG-DESGHLIYSGSDDNLCKVNSVL-------LLTRSIN 307 (372)
Q Consensus 245 ~s--~d---g~i~iwd~~~~~~~~~~~~-~~~~v---~~~~~s-p~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~ 307 (372)
.- .+ ..+.+.|..++.+...+.. ....| ....|. +.+..+|.....+|.-+||-+. .+....-
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~ 280 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDW 280 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCce
Confidence 32 22 2477788877654333321 22222 244443 3555666666688876666543 1223444
Q ss_pred CeeE-EEeccCCCeEEE
Q 017421 308 PCNK-YLFNPCNKYLII 323 (372)
Q Consensus 308 ~v~~-~~~s~~g~~l~~ 323 (372)
.|.. +.|+++++.|..
T Consensus 281 ~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYF 297 (353)
T ss_dssp -EEEEEEEECTSSEEEE
T ss_pred eecccceEcCCCCEEEE
Confidence 5644 678888776653
No 356
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.30 E-value=0.021 Score=52.93 Aligned_cols=137 Identities=13% Similarity=0.054 Sum_probs=87.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccc
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDG 215 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 215 (372)
+..+++++.+|.+..+|..+++.+.+... + ....+. ..+..++.++.+|.+..+|..+++..-.......
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--- 325 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--G---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH--- 325 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--C---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC---
Confidence 45566777889999999999866554221 1 111122 2466788888899999999998875332211000
Q ss_pred cceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCeE
Q 017421 216 LDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESGHLIYSGSDDNLC 294 (372)
Q Consensus 216 ~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~~~~~l~s~~~dg~i 294 (372)
........ .+..|+.++.+|.+...|..+|+.+.........+.+ ..+. +..|+.++.||.|
T Consensus 326 ------------~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~---~~~l~v~t~~G~l 388 (394)
T PRK11138 326 ------------RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVVA---DDKLLIQARDGTV 388 (394)
T ss_pred ------------CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEEE---CCEEEEEeCCceE
Confidence 01111112 2457788899999999999999988776543333332 2332 3478888999999
Q ss_pred EEEec
Q 017421 295 KVNSV 299 (372)
Q Consensus 295 ~vwd~ 299 (372)
..+++
T Consensus 389 ~~~~~ 393 (394)
T PRK11138 389 YAITR 393 (394)
T ss_pred EEEeC
Confidence 88764
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.00044 Score=39.32 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=29.8
Q ss_pred ccCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Q 017421 120 VDQTTSRAYVSQFSADGSLFVAGFQASQIRIYD 152 (372)
Q Consensus 120 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd 152 (372)
+..|...|.+++|++++.++++++.|+.+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456788999999999999999999999999996
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.27 E-value=0.075 Score=47.03 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=116.0
Q ss_pred CccccCCceeEeeeeeCCCCCccccCCCCceEEE-------EECCC-CCEEEEEeCCCcEEEEeCC-CCeEEEEee-ecc
Q 017421 97 GRFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVS-------QFSAD-GSLFVAGFQASQIRIYDVE-RGWKIQKDI-LAK 166 (372)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-------~~s~~-~~~l~~~~~dg~i~vwd~~-~~~~~~~~~-~~~ 166 (372)
..++..++...++++.|......++-....+... -.-|. .+.|.+-|.||.+.-..+. .|+...+.. .+.
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 3456667778888888888776666555554322 22232 2457788899999999887 343332211 111
Q ss_pred cCCcc-eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeec--c-cccceeccCCCCccccEEEEEEcCCCCEE
Q 017421 167 SLRWT-VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEI--H-DGLDFSAADDGGYSFGIFSLKFSTDGREL 242 (372)
Q Consensus 167 ~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~h~~~i~~~~~sp~~~~l 242 (372)
....+ +..-.+...+..++..+.+|.|+--|+.............. . ..-.+.| +.-.-+++++..+.|
T Consensus 180 ~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP-------GG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 180 PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP-------GGWQLIAYHAASGRL 252 (342)
T ss_dssp TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--------SSS-EEEETTTTEE
T ss_pred CCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC-------cceeeeeeccccCeE
Confidence 11222 23445555666777788999999999987765433222110 0 0011111 123346777755555
Q ss_pred EEEe---CCC-------eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC-EEEEEe-CCCeEEEEecccc
Q 017421 243 VAGS---SDD-------CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH-LIYSGS-DDNLCKVNSVLLL 302 (372)
Q Consensus 243 ~s~s---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-~l~s~~-~dg~i~vwd~~~~ 302 (372)
.+.- .++ .|.++|+.+++.+.++.. ..++.+|+++ .+.+ +|++.+ .++.|.+||..+.
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vs-qd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVS-QDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEE-SSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEc-cCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4321 111 499999999999999874 2467799999 5554 665544 5799999999864
No 359
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.26 E-value=0.037 Score=45.75 Aligned_cols=153 Identities=16% Similarity=0.239 Sum_probs=91.9
Q ss_pred CCceEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE-eCCCe
Q 017421 124 TSRAYVSQFSADGSLFVAGFQ----------ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA-SMSPI 192 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 192 (372)
..+.+.-..+|+|++++ |.. .|.++.|-....-. . ....-..-..++|+.+.+.+... +.+-.
T Consensus 108 knR~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~v~--~---i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQVE--L---IWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceee-eeeccccccccccccEEEEeccCCCce--e---eehhccCCccccccccCcEEEEEccCceE
Confidence 34555667889999854 321 23444444432211 1 11111234578899877766554 55677
Q ss_pred EEEEE--CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC
Q 017421 193 VHIVD--VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS 270 (372)
Q Consensus 193 i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 270 (372)
|.-|| ..+|.......+........+.+. ..-.++..-+|++.++.-..++|...|..+|+.+.++.-...
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~-------~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESL-------EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCC-------CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC
Confidence 87777 666664322222111111011110 122344466788888888899999999999999999988889
Q ss_pred CeEEEEEeCCCCCEEEEEe
Q 017421 271 DVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~ 289 (372)
.|+|++|-.++-..+++..
T Consensus 255 qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ceEEEEecCCCccEEEEEe
Confidence 9999999855555665543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.21 E-value=0.12 Score=46.38 Aligned_cols=170 Identities=15% Similarity=0.122 Sum_probs=97.3
Q ss_pred CcEEEEeCCCCeEEEEeeeccc-CCcceEEEEECCC----CCEEEEEeC---------C-CeEEEEECCCC-----ceee
Q 017421 146 SQIRIYDVERGWKIQKDILAKS-LRWTVTDTSLSPD----QRHLVYASM---------S-PIVHIVDVGSG-----TMES 205 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~----~~~l~~~~~---------d-g~i~vwd~~~~-----~~~~ 205 (372)
..|++.|..+.+.+........ +...+..+.+..+ ..+|++|+. . |.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877765544332221 1112334445443 467777654 2 88999999884 2211
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEee-cCCCCeEEEEEeCCCCC
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRIL-AHTSDVNTVCFGDESGH 283 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~ 283 (372)
... .. ..++|++++-- ++ .|+++. ++.|.+|++...+ ....-. .....+.++... ++
T Consensus 82 i~~--~~-------------~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~ 140 (321)
T PF03178_consen 82 IHS--TE-------------VKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KN 140 (321)
T ss_dssp EEE--EE-------------ESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TT
T ss_pred EEE--Ee-------------ecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc---cc
Confidence 111 11 23478888755 34 455554 5889999998777 333222 122356666554 56
Q ss_pred EEEEEeCCCeEEEEeccc----cc-----CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 284 LIYSGSDDNLCKVNSVLL----LT-----RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 284 ~l~s~~~dg~i~vwd~~~----~~-----~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+++.|.....+.++..+. +. ....+++++.|-++++.++++. -++++.++.+.
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~ 202 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYN 202 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-
T ss_pred EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEEC
Confidence 999999888888775431 11 3455688888887766555553 35777777665
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.20 E-value=0.035 Score=46.58 Aligned_cols=102 Identities=24% Similarity=0.166 Sum_probs=73.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 017421 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK 260 (372)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~ 260 (372)
..+++.|+..+.+.-.|..+|.......... .|.+-+.- -|++++.|...|.+++.+.++|.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~-----------------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs 84 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV-----------------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS 84 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc-----------------eeeeeeEE-ECCEEEEEEccCcEEEEEecchh
Confidence 4567788889999999999988744333211 22222221 47789999999999999999998
Q ss_pred EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc
Q 017421 261 LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 261 ~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~ 301 (372)
....+..- +.|.+-+...+++.++..|+.|+..+..|.++
T Consensus 85 ~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 85 QIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred heeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 77777643 23333333238899999999999999988873
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.14 Score=45.45 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=105.9
Q ss_pred EECCCCCE-EEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecce
Q 017421 131 QFSADGSL-FVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANV 209 (372)
Q Consensus 131 ~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 209 (372)
.|.++... +.+--..+.|.-|+..++....- .....+.++..-..+..|+++. .-+.+++.+++........
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~-----~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVF-----PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEE-----ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecc
Confidence 57777764 44555567888898876633221 1111234444333444444432 2356677765654212111
Q ss_pred eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 210 TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-----------DDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 210 ~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
. ..+ ......+.....|+|.+.++... -|.|+.+|. .+.....+..+-..-+.|+||
T Consensus 104 ~--~~~---------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S 171 (307)
T COG3386 104 P--EDG---------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS 171 (307)
T ss_pred c--cCC---------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence 1 111 12246677888999987765443 133444443 455555665555566789999
Q ss_pred CCCCCEEEEEeC-CCeEEEEeccc--cc-----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeec-eEEEeeccc
Q 017421 279 DESGHLIYSGSD-DNLCKVNSVLL--LT-----------RSINPCNKYLFNPCNKYLIIYLILVISIYSP-NILLDNYFL 343 (372)
Q Consensus 279 p~~~~~l~s~~~-dg~i~vwd~~~--~~-----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~-~i~lw~~~~ 343 (372)
||++.|+.+.. .+.|.-|++.. .. ......-.++...+|.+-+++. |.+ .|..|+-.
T Consensus 172 -pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~------~~g~~v~~~~pd- 243 (307)
T COG3386 172 -PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV------WGGGRVVRFNPD- 243 (307)
T ss_pred -CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc------cCCceEEEECCC-
Confidence 99987777654 47788887752 11 1122333444455555543332 333 66666666
Q ss_pred ceEEEEEeee
Q 017421 344 LRTFYSFMVH 353 (372)
Q Consensus 344 ~~~~~~~~~h 353 (372)
|+.+......
T Consensus 244 G~l~~~i~lP 253 (307)
T COG3386 244 GKLLGEIKLP 253 (307)
T ss_pred CcEEEEEECC
Confidence 6666555443
No 363
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.15 E-value=0.15 Score=45.16 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=53.5
Q ss_pred EEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeeecccCCc----ceEEEEECCCCCEEEEEeC--CC
Q 017421 128 YVSQFSADGSLFVAGF----------QASQIRIYDVERGWKIQKDILAKSLRW----TVTDTSLSPDQRHLVYASM--SP 191 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~--dg 191 (372)
-.+..+|+++.+.++. ..-.|.+||..+-..........+++. ....++++.|++++++... ..
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999887642 334699999999876666555543221 2345688899998887644 55
Q ss_pred eEEEEECCCCceeeecc
Q 017421 192 IVHIVDVGSGTMESLAN 208 (372)
Q Consensus 192 ~i~vwd~~~~~~~~~~~ 208 (372)
.|.|.|+...+......
T Consensus 119 SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEID 135 (342)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCceeeeec
Confidence 79999999888754443
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.22 Score=46.27 Aligned_cols=179 Identities=16% Similarity=0.085 Sum_probs=90.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecc-cCCcce-----EEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAK-SLRWTV-----TDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
+.+-++.|+.+.++ ++...||.+++||+.... ...... -....| ....+..+| ++.-..++.+.+.+-
T Consensus 81 ~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 81 GRIVGMGWTDDEEL-VVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNN 154 (410)
T ss_pred CCEEEEEECCCCeE-EEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeC
Confidence 78999999987664 455688999999987442 111110 001112 222333345 333334555544432
Q ss_pred CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 017421 199 GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 278 (372)
-.... ............ ...+ .+........++.+....+....++.+.+.+-...+. +. ..+++..+++|
T Consensus 155 ~~~~~-~~~~~~~~p~~~-~~~~---~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavS 225 (410)
T PF04841_consen 155 IDEPV-KLRRLPEIPGLW-TKFH---WWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVS 225 (410)
T ss_pred ccccc-hhhccccCCCcc-cccc---cccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEEC
Confidence 22111 001111100000 0000 0000100133445555555555556666444332211 22 24689999999
Q ss_pred CCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCCC
Q 017421 279 DESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCNK 319 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g~ 319 (372)
|+|+++|.-..+|.+.+.+....+ ........+.|.-+..
T Consensus 226 -png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 226 -PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred -CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 999999999999999888754111 2234667888876643
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.0011 Score=54.37 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=72.8
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEE-EEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 181 QRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 181 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+..+++|+.+|.|.+|.........-.. .. +- ..|.+ +.--.++.+..++..+|.|+.|++.-.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s-------------~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CS-------------GE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-hc-------------cc-ccceeccccccccceeEEeccCCceeeeccccC
Confidence 4668899999999999876221100000 00 00 12222 222234557889999999999999988
Q ss_pred eEEEEeecCC-CCeEEEEEeCCCCCEEEEE--eCCCeEEEEeccccc
Q 017421 260 KLSLRILAHT-SDVNTVCFGDESGHLIYSG--SDDNLCKVNSVLLLT 303 (372)
Q Consensus 260 ~~~~~~~~~~-~~v~~~~~sp~~~~~l~s~--~~dg~i~vwd~~~~~ 303 (372)
+.+...-.|+ .++..+..+ ..+++++.+ |.|..++.|++....
T Consensus 135 k~~g~~g~h~~~~~e~~ivv-~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELIVV-GSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ceeeeeccccCCCcceeEEe-cCCceEEeeccccchhhhhcchhhhh
Confidence 8777777777 677777777 778888888 889999999987443
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.04 E-value=0.17 Score=43.28 Aligned_cols=143 Identities=8% Similarity=0.162 Sum_probs=79.5
Q ss_pred cccCCcceEEEEECCCCC-EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE
Q 017421 165 AKSLRWTVTDTSLSPDQR-HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV 243 (372)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~ 243 (372)
..+-...+.+++|+|+.+ ++++....+.|..++.+ |+......+.. ....-.|++..++.+++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------------~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------------FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------------SSEEEEEE-STTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------------CCCceeEEEECCCEEEE
Confidence 334444699999999755 55666668888888874 56544433221 13677888887777777
Q ss_pred EEeCCCeEEEEECCCCe------EEEEee-----cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc----------
Q 017421 244 AGSSDDCIYVYDLEANK------LSLRIL-----AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL---------- 302 (372)
Q Consensus 244 s~s~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~---------- 302 (372)
+.-.++.+.++++.... ....+. .++..+-.++|+ +.++.|+++-...-..+|.++..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 66568999999884321 112222 244568999999 66555555555555566655420
Q ss_pred -------cCCCCCeeEEEeccCCCeEEEE
Q 017421 303 -------TRSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 303 -------~~~~~~v~~~~~s~~g~~l~~~ 324 (372)
......+.++.++|....|.+-
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliL 188 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLIL 188 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEE
Confidence 1233457889999986544443
No 367
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.02 E-value=0.07 Score=47.93 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=88.9
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421 136 GSLFVAGFQ----------ASQIRIYDVERG----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (372)
Q Consensus 136 ~~~l~~~~~----------dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 201 (372)
..+|++|.. .|.|.++++... ..+ +........++|+++.-- +++ |+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-KLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE-EEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEE-EEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc
Confidence 467777643 288999999884 122 222233445688888766 444 44443 478999999887
Q ss_pred c-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEee--cCCCCeEEEEE
Q 017421 202 T-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA-NKLSLRIL--AHTSDVNTVCF 277 (372)
Q Consensus 202 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~ 277 (372)
+ ......... ...+.++... +++|+.|+....+.++..+. ...+..+. .....++++.+
T Consensus 118 ~~l~~~~~~~~---------------~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~ 180 (321)
T PF03178_consen 118 KTLLKKAFYDS---------------PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEF 180 (321)
T ss_dssp SSEEEEEEE-B---------------SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEE
T ss_pred ccchhhheecc---------------eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEE
Confidence 7 333222211 1256666554 56999999888888775443 33233332 23456888888
Q ss_pred eCCCCCEEEEEeCCCeEEEEecc
Q 017421 278 GDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
- .+++.++.+..+|.+.++...
T Consensus 181 l-~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 181 L-VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E--SSSEEEEEETTSEEEEEEE-
T ss_pred e-cCCcEEEEEcCCCeEEEEEEC
Confidence 7 566799999999999999876
No 368
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.0035 Score=38.11 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=30.0
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeE
Q 017421 227 SFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKL 261 (372)
Q Consensus 227 ~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~ 261 (372)
...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 4543
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.022 Score=52.53 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCE-------EEEEeCCCeEEEEECCCCceee
Q 017421 134 ADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRH-------LVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 134 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
.+.++|+ .+..-..++-.|++.|+.+..-. -+. .|.-+.+.|+.+. -+.|-.+..|.-||++-....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk---~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~- 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWK---FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN- 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEee---ccC-CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-
Confidence 3444443 44444567888888886665522 222 2777777775432 234566888999998844321
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLI 285 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l 285 (372)
.. ...++..|.. .....|.+-..+| +|++|+.+|.|++||--..+....+++-..+|..|..+ .+|++|
T Consensus 418 kl---~~~q~kqy~~------k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvt-adGKwi 486 (644)
T KOG2395|consen 418 KL---AVVQSKQYST------KNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVT-ADGKWI 486 (644)
T ss_pred ee---eeeecccccc------ccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEee-ccCcEE
Confidence 11 1111111211 1245566655555 79999999999999974333444567788899999999 999988
Q ss_pred EEEeCCCeEEEEecc
Q 017421 286 YSGSDDNLCKVNSVL 300 (372)
Q Consensus 286 ~s~~~dg~i~vwd~~ 300 (372)
+..+ +..+.+.++.
T Consensus 487 l~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 487 LATC-KTYLLLIDTL 500 (644)
T ss_pred EEec-ccEEEEEEEe
Confidence 7654 6677777765
No 370
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.94 E-value=0.057 Score=47.55 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCC
Q 017421 122 QTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 122 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
.-.+.+..+.-++||++++++.......-|+.-.. .... ......+|.++.|.|++.+.+.+ ..|.|+.=+...
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~----~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH----NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE----E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE----ccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 34577888999999999988877555567775432 2222 22234579999999998876654 888888776221
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEE
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCF 277 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~ 277 (372)
....-........ .....+..++|.+++...++|+. |.+ +.....|+.=.... .-....+.+.|
T Consensus 217 ~~~~w~~~~~~~~-----------~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 217 DGETWSEPIIPIK-----------TNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp EEEEE---B-TTS-----------S--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEE
T ss_pred CccccccccCCcc-----------cCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEE
Confidence 1110000000000 01125889999998887776664 543 34444444322222 23456889999
Q ss_pred eCCCCCEEEEEeCCCeEEEE
Q 017421 278 GDESGHLIYSGSDDNLCKVN 297 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vw 297 (372)
. +..+-++. +.+|.|.-|
T Consensus 284 ~-~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 284 V-NPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp E-ETTEEEEE--STTEEEEE
T ss_pred c-CCCceEEE-CCCcEEEEe
Confidence 7 44444554 478887655
No 371
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.94 E-value=0.1 Score=45.09 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=89.0
Q ss_pred ceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCC
Q 017421 126 RAYVSQFSADGSLFVAGF---QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSG 201 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~ 201 (372)
.+...+++++++.++... ....+.++..... ..... .+ ..+...+|++++...+....+....++. ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999887665 3345666654433 22211 11 2588889999988777776666666664 3333
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe---CCCeEEEEECC---CC------eEEEEeecCC
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS---SDDCIYVYDLE---AN------KLSLRILAHT 269 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s---~dg~i~iwd~~---~~------~~~~~~~~~~ 269 (372)
......-... .-...|..+.+||||..++... .++.|.+--+. .+ ..........
T Consensus 99 ~~~~~~v~~~-------------~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 99 TGEPVEVDWP-------------GLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred cceeEEeccc-------------ccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 3221111000 0111799999999999887655 34677776553 22 1112222334
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCC
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDN 292 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg 292 (372)
..+..+.|. +++.+++.+...+
T Consensus 166 ~~v~~v~W~-~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 166 SDVTDVAWS-DDSTLVVLGRSAG 187 (253)
T ss_pred Ccceeeeec-CCCEEEEEeCCCC
Confidence 688999999 7787777665443
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.93 E-value=0.24 Score=43.28 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (372)
Q Consensus 134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (372)
..++.|+.|+.+| +.+++............. .+|..+...|+-+.+++-+ |+.+.++++..-............
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 4578899999988 899998333222221111 1399999999877776654 599999998765433211100000
Q ss_pred cccceeccCCCCccccEEEEE--EcCCC-CEEEEEeCCCeEEEEECCCC-----eEEEEeecCCCCeEEEEEeCCCCCEE
Q 017421 214 DGLDFSAADDGGYSFGIFSLK--FSTDG-RELVAGSSDDCIYVYDLEAN-----KLSLRILAHTSDVNTVCFGDESGHLI 285 (372)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~--~sp~~-~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp~~~~~l 285 (372)
...... ........+...+ -.+.+ ..|+++ ....|.+|..... +....+. -...+.+++|. ++.|
T Consensus 79 ~~~~~~--~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~---~~~i 151 (275)
T PF00780_consen 79 KSRSLP--TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL---GNKI 151 (275)
T ss_pred cccccc--ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe---CCEE
Confidence 000000 0000111333333 11233 344444 4568888887653 3444444 34678888887 4556
Q ss_pred EEEeCCCeEEEEecc
Q 017421 286 YSGSDDNLCKVNSVL 300 (372)
Q Consensus 286 ~s~~~dg~i~vwd~~ 300 (372)
+.|..++ ..+.|+.
T Consensus 152 ~v~~~~~-f~~idl~ 165 (275)
T PF00780_consen 152 CVGTSKG-FYLIDLN 165 (275)
T ss_pred EEEeCCc-eEEEecC
Confidence 6665433 4555554
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.92 E-value=0.0039 Score=37.92 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVE 154 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~ 154 (372)
....|.+++|+|..++||.+..+|.|.||.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35679999999999999999999999999983
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0044 Score=61.43 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=74.7
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 180 DQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
.+..++.|+..|.+-..|..+.-.. ..... .-..+|++++|+.+|+.++.|-.+|.|.+||+.++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne-------------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNE-------------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCC-------------ccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 4557888888888888887654110 00000 12359999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEE---EEeCCCCCEEEEEeCCCeEEEEec
Q 017421 260 KLSLRILAHTSDVNTV---CFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 260 ~~~~~~~~~~~~v~~~---~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
+.++.+..|..+.+.+ .+. .++..+.++...|. +|.+
T Consensus 163 k~l~~i~e~~ap~t~vi~v~~t-~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVITEHGAPVTGVIFVGRT-SQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeeeecCCccceEEEEEEe-CCCcEEEEccCCCc--eEEE
Confidence 9988888777666554 444 45567777777776 6664
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0048 Score=61.19 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeeccc
Q 017421 135 DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHD 214 (372)
Q Consensus 135 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 214 (372)
.+..++.|+..|.+-..|.... +..........++|++++|+.+|+.++.|-.+|.|.+||+..++..........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a-- 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA-- 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC--
Confidence 4667889999999999887754 222233455567999999999999999999999999999998876544432211
Q ss_pred ccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe
Q 017421 215 GLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC 250 (372)
Q Consensus 215 ~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~ 250 (372)
.+. .|..+.+..++..++++...|.
T Consensus 174 ----------p~t-~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 174 ----------PVT-GVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred ----------ccc-eEEEEEEeCCCcEEEEccCCCc
Confidence 112 3444445555667788777775
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.089 Score=44.91 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=89.0
Q ss_pred EECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC---------------
Q 017421 131 QFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--------------- 190 (372)
Q Consensus 131 ~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------- 190 (372)
.|||||.+|.+.-+ -|.|-|||...+ ....-....|.-....+.|.+||+.++.+...
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh
Confidence 59999999876533 368999998854 22323345555567889999999999876431
Q ss_pred ---CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCeEE
Q 017421 191 ---PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDC-----IYVYDLEANKLS 262 (372)
Q Consensus 191 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~-----i~iwd~~~~~~~ 262 (372)
..+.+.|..+|..+....+... -+...|..++..+||+.++.+-..|. -.+=-...++.+
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~------------l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPAS------------LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred hcCccEEEEeccccchhhhccCchh------------hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 1222333333333222221111 24457888888888876655433331 111111223333
Q ss_pred EEee-------cCCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc
Q 017421 263 LRIL-------AHTSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT 303 (372)
Q Consensus 263 ~~~~-------~~~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~ 303 (372)
.-+. .....|-+++.+ .+..+++..+ ..+..-+||..+..
T Consensus 266 ~~~~~pee~~~~~anYigsiA~n-~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIAAN-RRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred cccCCCHHHHHHHHhhhhheeec-ccCCeEEEecCCCCeEEEEEcCCCc
Confidence 2222 123466778887 4444444444 55667889988643
No 377
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.84 E-value=0.023 Score=51.80 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCCCEEEEEeC---------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC
Q 017421 178 SPDQRHLVYASM---------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD 248 (372)
Q Consensus 178 ~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d 248 (372)
|||+++++.... .+.+.+||+.++....+... ...+....|+|+|+.++... +
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------------~~~~~~~~~sP~g~~~~~v~-~ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------------PPKLQDAKWSPDGKYIAFVR-D 62 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------------ETTBSEEEE-SSSTEEEEEE-T
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------------ccccccceeecCCCeeEEEe-c
Confidence 577777776422 46789999999876555442 12678899999999999886 5
Q ss_pred CeEEEEECCCCeEEEEee-cC----------------CCCeEEEEEeCCCCCEEEEEeC-CCeEEEEec
Q 017421 249 DCIYVYDLEANKLSLRIL-AH----------------TSDVNTVCFGDESGHLIYSGSD-DNLCKVNSV 299 (372)
Q Consensus 249 g~i~iwd~~~~~~~~~~~-~~----------------~~~v~~~~~sp~~~~~l~s~~~-dg~i~vwd~ 299 (372)
+.|.+++..++...+.-. +. -+.-..+-|| ||+++|+.... +..|+.+.+
T Consensus 63 ~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 63 NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEE
T ss_pred CceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEe
Confidence 889999988775432211 20 1123568899 99999887754 344555544
No 378
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.80 E-value=0.37 Score=43.63 Aligned_cols=172 Identities=17% Similarity=0.138 Sum_probs=90.4
Q ss_pred EECCCCCEEEEEeC-C--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 131 QFSADGSLFVAGFQ-A--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 131 ~~s~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
+|.+||+.|+.++. | ..+.+.|+.+++..+- .. +.........++|+.+.++.......|...|+++.+...+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-Td--g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-TD--GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-cc--CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 68899977766544 4 4677888888854432 11 11122335677888888877766778999999998876665
Q ss_pred ceeecccccceeccCCCCccccEEEEEE--cCCCCEEEEEe----------------------CCCeEEEEECCCCeEEE
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKF--STDGRELVAGS----------------------SDDCIYVYDLEANKLSL 263 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~--sp~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~ 263 (372)
..... .+-...| +.|+..++-.- -...|.-.|+++|+...
T Consensus 119 ~~p~~----------------~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 119 EVPDD----------------WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp E--TT----------------EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred ECCcc----------------cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 54432 2222333 34555543221 12246666888887644
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeC---CCe-EEEEecccc-------cC--CCCCeeEEEeccCCCeEE
Q 017421 264 RILAHTSDVNTVCFGDESGHLIYSGSD---DNL-CKVNSVLLL-------TR--SINPCNKYLFNPCNKYLI 322 (372)
Q Consensus 264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~-i~vwd~~~~-------~~--~~~~v~~~~~s~~g~~l~ 322 (372)
.+. ....+..+.|+|.+..+|+-|-+ +.. -|||-+++- .. ....+.-=-|.|||..|.
T Consensus 183 v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 183 VFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred EEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 444 45678899999888888888643 332 367766521 11 122344456778877665
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.68 E-value=0.5 Score=43.29 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=90.9
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCCe---EEEEeeec-----ccCCcceEEEEECCCCCEEEEEeC------CCeEEEEECC
Q 017421 135 DGSLFVAGF-QASQIRIYDVERGW---KIQKDILA-----KSLRWTVTDTSLSPDQRHLVYASM------SPIVHIVDVG 199 (372)
Q Consensus 135 ~~~~l~~~~-~dg~i~vwd~~~~~---~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~ 199 (372)
+.++|+..+ ..+.|+|+|+.+.. .+.+.+.. +..-.....+.--|+|+.++++-. .|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 566777665 67899999998532 33332221 011123445555678988887532 3467788887
Q ss_pred CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCC
Q 017421 200 SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS--------------------SDDCIYVYDLEAN 259 (372)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s--------------------~dg~i~iwd~~~~ 259 (372)
+............ ....-..+-|.|..+.++++. ...++.+||+.+.
T Consensus 166 tf~v~g~We~~~~-------------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRG-------------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-T-------------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCC-------------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 7665444332211 122455677888888888764 2357999999999
Q ss_pred eEEEEeecCCC--CeEEEEEe-CCCCCE-EEEEeCCCeEEEEec-c----------ccc----------C-------CCC
Q 017421 260 KLSLRILAHTS--DVNTVCFG-DESGHL-IYSGSDDNLCKVNSV-L----------LLT----------R-------SIN 307 (372)
Q Consensus 260 ~~~~~~~~~~~--~v~~~~~s-p~~~~~-l~s~~~dg~i~vwd~-~----------~~~----------~-------~~~ 307 (372)
+.++++.--.. .+..+.|. .|+..+ ++.+.-..+|-.|-. . .+. . ...
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 99999874332 34567775 133333 333334444444322 1 000 0 134
Q ss_pred CeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccce
Q 017421 308 PCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLR 345 (372)
Q Consensus 308 ~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~ 345 (372)
-|+.+..|.|.++|..+. --++.++.+|+..-.
T Consensus 313 LitDI~iSlDDrfLYvs~-----W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSN-----WLHGDVRQYDISDPF 345 (461)
T ss_dssp ----EEE-TTS-EEEEEE-----TTTTEEEEEE-SSTT
T ss_pred ceEeEEEccCCCEEEEEc-----ccCCcEEEEecCCCC
Confidence 579999999999999884 125888888886643
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.45 Score=40.83 Aligned_cols=204 Identities=11% Similarity=0.086 Sum_probs=109.3
Q ss_pred CCceEEEEECCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEE
Q 017421 124 TSRAYVSQFSADG-SLFVAGFQASQ-IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~~~-~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vw 196 (372)
+..-..|+|+|.- +-++.+-.-|+ ..++|....+.+....... ...-.-.-.|+|||.+|...-. .|.|-||
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~-~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQE-GRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEeccc-CceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 4445567788854 34555555444 5688888765544332221 1112334579999998876533 3789999
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-------C-----------eEEEEECCC
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-------D-----------CIYVYDLEA 258 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-------g-----------~i~iwd~~~ 258 (372)
|.+.+- ..+-++. +|.-....+.|.+||+.++.+... | ++.+.|-.+
T Consensus 146 d~r~~f-qrvgE~~--------------t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 146 DAREGF-QRVGEFS--------------THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred eccccc-ceecccc--------------cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 987432 1222111 244466778999999998876420 1 122333334
Q ss_pred CeEEEEe--e--cCCCCeEEEEEeCCCCCEEEEEeCCCe----------------EEEEecc--cccCCCCCeeEEEecc
Q 017421 259 NKLSLRI--L--AHTSDVNTVCFGDESGHLIYSGSDDNL----------------CKVNSVL--LLTRSINPCNKYLFNP 316 (372)
Q Consensus 259 ~~~~~~~--~--~~~~~v~~~~~sp~~~~~l~s~~~dg~----------------i~vwd~~--~~~~~~~~v~~~~~s~ 316 (372)
|+.+.+. . .+.-.|..++.. +||..++-+-..|- +...++. +......-|-+++.+.
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g-~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIG-RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeC-CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 4332221 1 233456777776 77776665533221 1111111 0002223456667666
Q ss_pred CCCeEEEEeeeeEEEeeceEEEeecccceEEEE
Q 017421 317 CNKYLIIYLILVISIYSPNILLDNYFLLRTFYS 349 (372)
Q Consensus 317 ~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~ 349 (372)
+..+++..+. --+...+||..+|..+..
T Consensus 290 ~~glV~lTSP-----~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 290 RDGLVALTSP-----RGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cCCeEEEecC-----CCCeEEEEEcCCCcEEec
Confidence 5555554431 124556899999887654
No 381
>PHA02713 hypothetical protein; Provisional
Probab=96.45 E-value=0.34 Score=47.06 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=98.8
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCCce
Q 017421 135 DGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSGTM 203 (372)
Q Consensus 135 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 203 (372)
++..+++|+.+ ..+..||..++.-... ............+.+ +++..+.|+.++ .+..||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~-~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL-PPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeC-CCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56677777753 3477888877632111 111111111222222 577778887654 478899887754
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC-----------------------CeEEEEECCCCe
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD-----------------------DCIYVYDLEANK 260 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d-----------------------g~i~iwd~~~~~ 260 (372)
........... ....+. -+|+..+.|+.+ ..+..||..+++
T Consensus 380 ~~~~~mp~~r~--------------~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 380 KMLPDMPIALS--------------SYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred EECCCCCcccc--------------cccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 33322221110 111122 256666777654 247788887764
Q ss_pred E--EEEeecCCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEeccc-cc-----CCCCC--eeEEEeccCCCeEEEE
Q 017421 261 L--SLRILAHTSDVNTVCFGDESGHLIYSGSDD------NLCKVNSVLL-LT-----RSINP--CNKYLFNPCNKYLIIY 324 (372)
Q Consensus 261 ~--~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d------g~i~vwd~~~-~~-----~~~~~--v~~~~~s~~g~~l~~~ 324 (372)
- +..+...... .+++. -++++.+.|+.+ ..+..||..+ -. ....+ ..+++. -+|+..++|
T Consensus 444 W~~v~~m~~~r~~-~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~G 519 (557)
T PHA02713 444 WETLPNFWTGTIR-PGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLH 519 (557)
T ss_pred EeecCCCCccccc-CcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEe
Confidence 3 2222111111 22333 367777777754 2366788775 22 11101 111221 245655555
Q ss_pred e-ee--eEEEeeceEEEeecccceEEEEEeeeE
Q 017421 325 L-IL--VISIYSPNILLDNYFLLRTFYSFMVHI 354 (372)
Q Consensus 325 ~-~~--~~~~~d~~i~lw~~~~~~~~~~~~~h~ 354 (372)
. ++ .+..||..-.-|..-..+.-.++.+|.
T Consensus 520 g~~~~~~~e~yd~~~~~W~~~~~~~~~~~~~~~ 552 (557)
T PHA02713 520 CYESYMLQDTFNVYTYEWNHICHQHSNSYIMHN 552 (557)
T ss_pred eecceeehhhcCcccccccchhhhcCCceEeec
Confidence 3 22 355566666677666666666666664
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.42 E-value=0.11 Score=48.82 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=62.9
Q ss_pred cEEEEEEcCCC----CEEEEEeCCCeEEEEECCC-----CeEEEEeec-CCC----CeEEEEEeCCCCCEEEEEeCCCeE
Q 017421 229 GIFSLKFSTDG----RELVAGSSDDCIYVYDLEA-----NKLSLRILA-HTS----DVNTVCFGDESGHLIYSGSDDNLC 294 (372)
Q Consensus 229 ~i~~~~~sp~~----~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~-~~~----~v~~~~~sp~~~~~l~s~~~dg~i 294 (372)
.|..+.|.|-+ ..+++..-...|.||.+.- ++.+..... ... -...+.|+ |....|++-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCcee
Confidence 68999999852 2344445568899999852 222222111 111 12457899 777777766555444
Q ss_pred EEEeccc----c---cCCCCCeeEEEeccCCCeEEEEeeeeEE
Q 017421 295 KVNSVLL----L---TRSINPCNKYLFNPCNKYLIIYLILVIS 330 (372)
Q Consensus 295 ~vwd~~~----~---~~~~~~v~~~~~s~~g~~l~~~~~~~~~ 330 (372)
.+++++. . -...+.|.+.+|.+||+.|+++.+..+.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLH 179 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLH 179 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEE
Confidence 4555541 1 1456789999999999999988655443
No 383
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.40 E-value=0.67 Score=44.30 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=87.4
Q ss_pred EEECCCCCEEEEEeCCC------------------cEEEEeCCCCeEEEEeeecccCCc---ceEEEEEC----CCCC--
Q 017421 130 SQFSADGSLFVAGFQAS------------------QIRIYDVERGWKIQKDILAKSLRW---TVTDTSLS----PDQR-- 182 (372)
Q Consensus 130 ~~~s~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~----~~~~-- 182 (372)
.++.+.+..+++++.++ .|.-+|..+++............. ......+. -++.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~ 301 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV 301 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence 45555667777776555 689999999977765432211000 00000111 1333
Q ss_pred -EEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE-----------------
Q 017421 183 -HLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA----------------- 244 (372)
Q Consensus 183 -~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s----------------- 244 (372)
.++.++.+|.+...|.++|+.+-...... ..++.+| + .++.
T Consensus 302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------------------~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~ 360 (488)
T cd00216 302 PAIVHAPKNGFFYVLDRTTGKLISARPEVE-------------------QPMAYDP-G-LVYLGAFHIPLGLPPQKKKRC 360 (488)
T ss_pred EEEEEECCCceEEEEECCCCcEeeEeEeec-------------------cccccCC-c-eEEEccccccccCcccccCCC
Confidence 57778889999999999998754433210 1122223 1 1221
Q ss_pred -EeCCCeEEEEECCCCeEEEEeecCC--------CCe--EEEEEeCCCCCEEEEEeCCCeEEEEeccccc
Q 017421 245 -GSSDDCIYVYDLEANKLSLRILAHT--------SDV--NTVCFGDESGHLIYSGSDDNLCKVNSVLLLT 303 (372)
Q Consensus 245 -~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~ 303 (372)
...+|.+.-.|+.+++.+.+..... .+. ..+. ..+..++.++.||.|+.+|.++.+
T Consensus 361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCc
Confidence 1235778888988888776655320 111 1122 245788888899999999987543
No 384
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.36 E-value=0.59 Score=40.36 Aligned_cols=134 Identities=11% Similarity=0.100 Sum_probs=85.0
Q ss_pred ceEEEEECCCCCEEEEEe---CCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 171 TVTDTSLSPDQRHLVYAS---MSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
.+.+.+++++++.++... ....+.++.......... . + ..+....|++++...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~-------------g--~~l~~PS~d~~g~~W~v~~~ 85 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL----T-------------G--GSLTRPSWDPDGWVWTVDDG 85 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec----c-------------C--CccccccccCCCCEEEEEcC
Confidence 588999999999887766 334565655443222111 0 0 16777899999887777666
Q ss_pred CCeEEEEE-CCCCeEE-EEeec--CCCCeEEEEEeCCCCCEEEEEe---CCCeEEEEeccc---------------ccCC
Q 017421 248 DDCIYVYD-LEANKLS-LRILA--HTSDVNTVCFGDESGHLIYSGS---DDNLCKVNSVLL---------------LTRS 305 (372)
Q Consensus 248 dg~i~iwd-~~~~~~~-~~~~~--~~~~v~~~~~sp~~~~~l~s~~---~dg~i~vwd~~~---------------~~~~ 305 (372)
+...+++. ..++... ..+.. -...|..+.+| +||..++... .++.|.+--+.. ....
T Consensus 86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vS-pDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 86 SGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVS-PDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCceEEEEecCCCcceeEEecccccCCceEEEEEC-CCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 66666663 3333321 12221 11289999999 9999887665 346666654431 1123
Q ss_pred CCCeeEEEeccCCCeEEEE
Q 017421 306 INPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 306 ~~~v~~~~~s~~g~~l~~~ 324 (372)
...+..+.|.+++.+++.+
T Consensus 165 ~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred cCcceeeeecCCCEEEEEe
Confidence 4578999999999887766
No 385
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.34 E-value=0.67 Score=40.92 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=85.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCcee
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVE-RGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTME 204 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (372)
....+....++..++++ ..|. ||... .+..-.... ......+..+.-++||++++++..-..+.-||.....-.
T Consensus 105 s~~~i~~l~~~~~~l~~-~~G~--iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 105 SPFGITALGDGSAELAG-DRGA--IYRTTDGGKTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQ 179 (302)
T ss_dssp -EEEEEEEETTEEEEEE-TT----EEEESSTTSSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-E
T ss_pred CeeEEEEcCCCcEEEEc-CCCc--EEEeCCCCCCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccce
Confidence 33444444444444443 3354 34333 333332222 233356888999999998888876555667776433222
Q ss_pred eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeEEEE--ee--cCCCCeEEEEEeC
Q 017421 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL-EANKLSLR--IL--AHTSDVNTVCFGD 279 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~-~~~~~~~~--~~--~~~~~v~~~~~sp 279 (372)
.... .-...|..|.|.|++.+.+.+ ..|.|+.=+. ...+.-.. .. ...-.+..++|.
T Consensus 180 ~~~r----------------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~- 241 (302)
T PF14870_consen 180 PHNR----------------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYR- 241 (302)
T ss_dssp EEE------------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEES-
T ss_pred EEcc----------------CccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEec-
Confidence 1111 112389999999998876655 7788887762 22221111 11 122347889998
Q ss_pred CCCCEEEEEeCCCeEEE-------Eecc-cccCCCCCeeEEEeccCCCeEEEEeee
Q 017421 280 ESGHLIYSGSDDNLCKV-------NSVL-LLTRSINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~v-------wd~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
+++...++| ..|.+.+ |... .........+.+.|.++.+-++.+.++
T Consensus 242 ~~~~~wa~g-g~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 242 PPNEIWAVG-GSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp SSS-EEEEE-STT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred CCCCEEEEe-CCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence 666666655 4555443 2211 223445678999998888888888533
No 386
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.0022 Score=62.26 Aligned_cols=177 Identities=12% Similarity=0.023 Sum_probs=95.4
Q ss_pred ccccCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC--CeEEEEe--eecccCCcceEEEEECC---CCCEEEEEeC
Q 017421 118 WPVDQTTSRAYVSQFSA-DGSLFVAGFQASQIRIYDVER--GWKIQKD--ILAKSLRWTVTDTSLSP---DQRHLVYASM 189 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~--~~~~~~~--~~~~~~~~~v~~~~~~~---~~~~l~~~~~ 189 (372)
..+++.++.|..+.|.. +-..++ -.-|.+.||++.- |+....+ ........++.-+.|.| +.-++.++-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 34678899999999854 323333 2336788998753 3221111 11222233456667766 5667777888
Q ss_pred CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCeEEEE
Q 017421 190 SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLE-----ANKLSLR 264 (372)
Q Consensus 190 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~-----~~~~~~~ 264 (372)
++.+++..+.................+.|-. .+.+.--..+|||+.++.+..||.++.|.+. .-.++..
T Consensus 204 ~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~------~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 204 GGEIRLLNINRALRSLFRSHSQRVTDMAFFA------EGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred CCceeEeeechHHHHHHHhcCCCcccHHHHh------hchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 8898888776543211110000000000000 0011112378999999999999988877653 3346666
Q ss_pred eecCCC-CeEEEEEeCCC-------C--CEEEEEe-CCCeEEEEeccccc
Q 017421 265 ILAHTS-DVNTVCFGDES-------G--HLIYSGS-DDNLCKVNSVLLLT 303 (372)
Q Consensus 265 ~~~~~~-~v~~~~~sp~~-------~--~~l~s~~-~dg~i~vwd~~~~~ 303 (372)
.+.|.+ +-.|.-++ .. + .++++++ .+..+++|.-..++
T Consensus 278 wkphd~~p~vC~lc~-~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCH-KQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred cCCCCCCCceeeeec-cccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 677763 33333333 11 1 1334443 34568888865444
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.25 E-value=1.2 Score=42.72 Aligned_cols=116 Identities=21% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCCCeEEEEeeecccCC-----------------cce-EEEEECCCCCEEEEEeCCC--------------
Q 017421 144 QASQIRIYDVERGWKIQKDILAKSLR-----------------WTV-TDTSLSPDQRHLVYASMSP-------------- 191 (372)
Q Consensus 144 ~dg~i~vwd~~~~~~~~~~~~~~~~~-----------------~~v-~~~~~~~~~~~l~~~~~dg-------------- 191 (372)
.++.+..+|..+++.+.+........ ..+ ....+.+.+..++.++.++
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCC
Confidence 36788999999887666543321100 001 1244555566777777655
Q ss_pred ----eEEEEECCCCceeeecceeecccccceeccCCCCccccE-EEEEEcCCCC---EEEEEeCCCeEEEEECCCCeEEE
Q 017421 192 ----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGI-FSLKFSTDGR---ELVAGSSDDCIYVYDLEANKLSL 263 (372)
Q Consensus 192 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~~~~sp~~~---~l~s~s~dg~i~iwd~~~~~~~~ 263 (372)
.|.-+|.++|+..-...... +....+. +...++ ..+. .-++. .++.++.+|.+...|.++|+.+.
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~-~~~~~~~-----~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTP-HDLWDYD-----GPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCC-CCCcccc-----cCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 78999999998754443211 0000000 011111 1111 11333 57788889999999999999877
Q ss_pred Eee
Q 017421 264 RIL 266 (372)
Q Consensus 264 ~~~ 266 (372)
...
T Consensus 326 ~~~ 328 (488)
T cd00216 326 ARP 328 (488)
T ss_pred EeE
Confidence 654
No 388
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.07 E-value=0.43 Score=43.78 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=80.2
Q ss_pred CceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCCC--eEEEEeeecccCCcceEEEEECCCCCEEEEEeCC
Q 017421 125 SRAYVSQFSADGSLFVAGF-----------QAS-QIRIYDVERG--WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS 190 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~-----------~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 190 (372)
.....|+|.++|+++++-. ..+ .|.+++-.++ ..........+ -.....+++.+++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~-l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE-LSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC-CCCccceeEecCC-EEE-eCCC
Confidence 4567789999999877643 223 6777765432 21111122222 2246889999988 444 4444
Q ss_pred CeEEEEECCCCceee--ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-------------------CC
Q 017421 191 PIVHIVDVGSGTMES--LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-------------------DD 249 (372)
Q Consensus 191 g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-------------------dg 249 (372)
...++.|........ ...+.. ++. .. ...+....+.+.|.|||.+.++-+. .|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~---~~~--~~-~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLS---GFG--GQ-INNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEE---ccC--CC-CCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 333343543221100 000100 000 00 0012335788999999987664441 14
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 017421 250 CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGS 289 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~ 289 (372)
.|..+|...++.. .+...-.....++|+ ++|+++++-.
T Consensus 165 ~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d-~~G~l~~tdn 202 (367)
T TIGR02604 165 GLFRYNPDGGKLR-VVAHGFQNPYGHSVD-SWGDVFFCDN 202 (367)
T ss_pred eEEEEecCCCeEE-EEecCcCCCccceEC-CCCCEEEEcc
Confidence 4666666655432 222223445789999 7898877644
No 389
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.023 Score=46.72 Aligned_cols=69 Identities=3% Similarity=0.003 Sum_probs=42.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
+..+++|+.+|.|.+|............ ..........+.-..++.+..+++.+|.|+.|++.-++...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-hcccccceeccccccccceeEEeccCCceeeeccccCceee
Confidence 4568899999999999887321111100 11111112223333356688889999999999998776533
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.98 E-value=0.44 Score=46.24 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=71.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee-cCCCCeEEEEEe-CCCCCEEEEEeCCCeEEEEecc-------
Q 017421 230 IFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL-AHTSDVNTVCFG-DESGHLIYSGSDDNLCKVNSVL------- 300 (372)
Q Consensus 230 i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s-p~~~~~l~s~~~dg~i~vwd~~------- 300 (372)
+.-+.-+.-++.-++.+....+.|||.+.+.....-. ...+.|.++.|. .|+++.+++.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444445679999999887543332 456789999995 3788888888899999887532
Q ss_pred ----------cccCCC-CCeeEEEeccCCCeEEEEeeeeEEEeeceEE
Q 017421 301 ----------LLTRSI-NPCNKYLFNPCNKYLIIYLILVISIYSPNIL 337 (372)
Q Consensus 301 ----------~~~~~~-~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~ 337 (372)
.+..++ .+|.+..|-++|.+++ +++..+-++|..+.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~~ 158 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKWLD 158 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECCCcC
Confidence 011333 6788999999987655 55566677776655
No 391
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.88 E-value=1 Score=40.82 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCCccccCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC
Q 017421 115 NGPWPVDQTTSRAYVSQFSADGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM 189 (372)
Q Consensus 115 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 189 (372)
.....+..-...+..+.|+|...-+++=|..| .-+||-++.................+..=-|.|||..|..-+.
T Consensus 178 G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 178 GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 33444444566778889999655444433322 1255655432211121112222345677789999998776433
Q ss_pred -----CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 190 -----SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 190 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
+..|.-+|+.+++........ ....+--++||++++-
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~~~p------------------~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLMEMP------------------WCSHFMSSPDGKLFVG 299 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEEEE-------------------SEEEEEE-TTSSEEEE
T ss_pred cCCCCceEEEeeCCCCCCceEEEeCC------------------ceeeeEEcCCCCEEEe
Confidence 335777788877654332211 3344555788887764
No 392
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=1.1 Score=38.66 Aligned_cols=160 Identities=14% Similarity=0.208 Sum_probs=98.2
Q ss_pred EEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcc
Q 017421 148 IRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYS 227 (372)
Q Consensus 148 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 227 (372)
.-+|..+-...+.... ..+....+.+++|+|+.+.|++....+.-.|+=...|.......+...
T Consensus 65 ~~~~l~~y~~~i~akp-i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--------------- 128 (316)
T COG3204 65 IARYLLEYRARIDAKP-ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--------------- 128 (316)
T ss_pred hhhccCCceEEEeccc-cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc---------------
Confidence 4556554332222211 223344599999999999998888877777777777777655554322
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE-----ee----cC-CCCeEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLR-----IL----AH-TSDVNTVCFGDESGHLIYSGSDDNLCKVN 297 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~----~~-~~~v~~~~~sp~~~~~l~s~~~dg~i~vw 297 (372)
...-.|.+..+|++.++--.++.+.++.+..+..+.. +. .+ +.....++|. +..+.|+.+-+..=+.||
T Consensus 129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 129 SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIF 207 (316)
T ss_pred CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEE
Confidence 1455677777787777777788888887765532111 11 12 4567789999 666666666566657777
Q ss_pred eccccc---------C-------CCCCeeEEEeccCCCeEEEE
Q 017421 298 SVLLLT---------R-------SINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 298 d~~~~~---------~-------~~~~v~~~~~s~~g~~l~~~ 324 (372)
.+.... . .-..|.++.|.+....|.+-
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 208 EVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred EEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 654111 1 11346778888765544443
No 393
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.78 E-value=0.12 Score=50.16 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=61.4
Q ss_pred cEEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---------
Q 017421 229 GIFSLKFSTDGRELVAGS------SDD--CIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD--------- 291 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d--------- 291 (372)
.+...+++|+|+.++... .|. .|.+++... .. ..+.. ....+...|+ |+|..|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWs-pDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWS-LDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceEC-CCCCceEEEecCcceEEEecc
Confidence 678889999999887654 233 566666532 22 23322 2247889999 888877665422
Q ss_pred ---CeEEEEeccccc---CCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421 292 ---NLCKVNSVLLLT---RSINPCNKYLFNPCNKYLIIYLILVI 329 (372)
Q Consensus 292 ---g~i~vwd~~~~~---~~~~~v~~~~~s~~g~~l~~~~~~~~ 329 (372)
+.+.+.+++... .....|.++.|||||..++...++.+
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v 470 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKV 470 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEE
Confidence 234433443222 23567999999999999987654433
No 394
>PRK13684 Ycf48-like protein; Provisional
Probab=95.66 E-value=1.6 Score=39.48 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=84.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
...+.++.+.|++.+++++.. |.+..-.-..++..... .......++++.+.++++.++++ ..|.+.+=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 567889999999887766654 54432211222222221 22334468999999999877765 457664322333332
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee---cCCCCeEEEEEeCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL---AHTSDVNTVCFGDE 280 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~ 280 (372)
-........ .....+..+.+.|++..++++ .+|.+. .....++.-.... .-....+.+.|. .
T Consensus 248 W~~~~~~~~------------~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~-~ 312 (334)
T PRK13684 248 WSKPIIPEI------------TNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFL-D 312 (334)
T ss_pred cccccCCcc------------ccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEe-C
Confidence 111111000 011257888999988766655 456554 3344333222221 122357788887 5
Q ss_pred CCCEEEEEeCCCeEEEEe
Q 017421 281 SGHLIYSGSDDNLCKVNS 298 (372)
Q Consensus 281 ~~~~l~s~~~dg~i~vwd 298 (372)
+++.+++ +..|.|.-|+
T Consensus 313 ~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 313 PEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCceEEE-CCCceEEEec
Confidence 5555554 4778877665
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.66 E-value=0.68 Score=43.80 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=85.6
Q ss_pred CCceEEEEECCCCCEEE-EEe--CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCC----CCEEEEEeCCCeEEEE
Q 017421 124 TSRAYVSQFSADGSLFV-AGF--QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPD----QRHLVYASMSPIVHIV 196 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~-~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~vw 196 (372)
-.++.+++|. ||+.++ +.- .+|.+++=|.. .+.+ + . -|.++.|.|- ...++.......|.||
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq---F-E---hV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ---F-E---HVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec---c-c---eeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 4578899996 565544 331 23333332211 1111 1 1 3899999993 3345555667889999
Q ss_pred ECCCCceeeecce----eecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--EEEEeecCCC
Q 017421 197 DVGSGTMESLANV----TEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK--LSLRILAHTS 270 (372)
Q Consensus 197 d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~ 270 (372)
.+.........-+ .+..+. ..--...+.|+|....|++-+....-.++++.... ....+ ...+
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~----------~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G 156 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREP----------FPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSG 156 (671)
T ss_pred EeccCccccccceeeeeeeccCC----------cccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCc
Confidence 9863222111110 111000 00012346799998888776655544566665433 33334 3557
Q ss_pred CeEEEEEeCCCCCEEEEEeCC-CeEEEEec
Q 017421 271 DVNTVCFGDESGHLIYSGSDD-NLCKVNSV 299 (372)
Q Consensus 271 ~v~~~~~sp~~~~~l~s~~~d-g~i~vwd~ 299 (372)
-|.|.+|. .||+.|+++-.. =.-++||-
T Consensus 157 ~IhCACWT-~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 157 LIHCACWT-KDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred eEEEEEec-CcCCEEEEEeCCeEEEEEecC
Confidence 89999999 899988776433 33567874
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.61 E-value=1.3 Score=38.04 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=97.4
Q ss_pred CceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421 125 SRAYVSQFSADGSLFVAGFQAS--QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
.-..++.|..+|.++-+.+.-| .|+.+|+.+++........... ---.++.. +++.....=.++...+||..+-+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~--FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY--FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc--cceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 3456788877888877777666 7999999998766544333221 11233333 23344444568899999999876
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecC--C---CCeEEEEE
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAH--T---SDVNTVCF 277 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~---~~v~~~~~ 277 (372)
........ . .=..++ .|++.|+.+.....++.+|..+.+....+.-. . ..++.+.|
T Consensus 122 ~~~~~~y~--~---------------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~ 182 (264)
T PF05096_consen 122 KIGTFPYP--G---------------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY 182 (264)
T ss_dssp EEEEEE-S--S---------------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE
T ss_pred EEEEEecC--C---------------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE
Confidence 65443322 1 223444 46777887777788999999887666555421 1 23445555
Q ss_pred eCCCCCEEEEEeCCCeEEEE-----------eccccc----------CCCCCeeEEEeccCCCeEEEE
Q 017421 278 GDESGHLIYSGSDDNLCKVN-----------SVLLLT----------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vw-----------d~~~~~----------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
- +|.+.|=.=....|... |+..+. ....-.+.++|.|.++.+.+.
T Consensus 183 i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 183 I--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp E--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred E--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 4 45444433333333333 443221 113456899999886655443
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.48 E-value=0.054 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCeEEEEEeCCCC--CEEEEEeCCCeEEEEeccc
Q 017421 270 SDVNTVCFGDESG--HLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 270 ~~v~~~~~sp~~~--~~l~s~~~dg~i~vwd~~~ 301 (372)
+.|.++.|+|..+ .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999996566 7999998999999999984
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.24 Score=50.12 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=90.1
Q ss_pred ceEEEEECCCCCEEEEEeC--CCeEEEEECCCCceeeecce-eecccccceeccCCCCccccEEEEEEcCCCC-EEEEEe
Q 017421 171 TVTDTSLSPDQRHLVYASM--SPIVHIVDVGSGTMESLANV-TEIHDGLDFSAADDGGYSFGIFSLKFSTDGR-ELVAGS 246 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~-~l~s~s 246 (372)
++..+...+|+...++... +-.|..||+++-........ ........+. ...-..++.|+|.-. ..+...
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~e------k~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFE------KPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhc------cccccccccccCCccchhhhhc
Confidence 4666667778766554433 34789999876443211110 0000000000 112456788888532 235556
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccc-----cc----CCCCCeeEEEeccC
Q 017421 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLL-----LT----RSINPCNKYLFNPC 317 (372)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~-----~~----~~~~~v~~~~~s~~ 317 (372)
.|+.|++..+........--.-....++++|+ |.|+.++.|-..|++.-|...- +. .....|.+++|-..
T Consensus 176 ~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS-prGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS-PRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred cccchhhhhhhhhhhhhcccCcccceeeEEec-cccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecc
Confidence 68888888775433221111245678999999 9999999999999998887541 11 22467899999988
Q ss_pred CCeEEEEe
Q 017421 318 NKYLIIYL 325 (372)
Q Consensus 318 g~~l~~~~ 325 (372)
..++++..
T Consensus 255 ~eflvvy~ 262 (1405)
T KOG3630|consen 255 QEFLVVYG 262 (1405)
T ss_pred eeEEEEec
Confidence 88887764
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.35 E-value=0.49 Score=45.92 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=70.3
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcee
Q 017421 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLS--PDQRHLVYASMSPIVHIVDVGSGTME 204 (372)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~ 204 (372)
+.-+.-+.-++.-++-+....+.|||...+........ .....|.++.|. |+++.+++.+....|.+|--......
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 33344444455444444456899999998864444332 335579999886 58999999999999999864211100
Q ss_pred eecceeecccccceeccCCCCcc-ccEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 017421 205 SLANVTEIHDGLDFSAADDGGYS-FGIFSLKFSTDGRELVAGSSDDCIYVYDLE 257 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~-~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~ 257 (372)
...........+... .|+ .+|.+..|.++|.+++.+ +..+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~-----~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDIS-----SHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEee-----cCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 000000000011111 111 378999999999655543 3668888643
No 400
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.35 E-value=0.88 Score=44.28 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=82.3
Q ss_pred EEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC-----eEEEE
Q 017421 128 YVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIV 196 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vw 196 (372)
.+++.. ++...++|+.| .++..||..+++-.. .......+.......+ +|...++|+.|| .+..|
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence 334443 45777888888 357788887764221 1111111111111222 678888898886 47788
Q ss_pred ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeE--EEEeecC
Q 017421 197 DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD------CIYVYDLEANKL--SLRILAH 268 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg------~i~iwd~~~~~~--~~~~~~~ 268 (372)
|..+.+........... .....+. -+|...++|+.++ ++..||..+++- +..+..-
T Consensus 402 Dp~~~~W~~va~m~~~r--------------~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~ 465 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRR--------------SGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR 465 (571)
T ss_pred cCCCCcccccCCCCcce--------------eeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc
Confidence 88777643333221110 1122222 2477778887554 478888877653 2222211
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCe-----EEEEeccc
Q 017421 269 TSDVNTVCFGDESGHLIYSGSDDNL-----CKVNSVLL 301 (372)
Q Consensus 269 ~~~v~~~~~sp~~~~~l~s~~~dg~-----i~vwd~~~ 301 (372)
... ..++. -++.+.+.|+.|+. |..||..+
T Consensus 466 R~~-~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 466 RSG-FGVAV--LNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred ccc-ceEEE--ECCEEEEECCccCCCccceEEEEcCCC
Confidence 111 22444 36888888887763 66777763
No 401
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.35 E-value=1.7 Score=37.83 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 180 DQRHLVYASMSPIVHIVDVG-SGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 180 ~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
.++.|+.|+.+| +.+++.. ........ +...|..+...|+-+.+++-+ |+.+.++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe------------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 578899999998 8999982 22221111 122588999989877777766 59999999876
Q ss_pred CeEEEE--------------eecCCCCeEEEE-EeCCCCCEEEEEeCCCeEEEEecccc-----c-----CCCCCeeEEE
Q 017421 259 NKLSLR--------------ILAHTSDVNTVC-FGDESGHLIYSGSDDNLCKVNSVLLL-----T-----RSINPCNKYL 313 (372)
Q Consensus 259 ~~~~~~--------------~~~~~~~v~~~~-~sp~~~~~l~s~~~dg~i~vwd~~~~-----~-----~~~~~v~~~~ 313 (372)
-..... .......+...+ -.+..+...+......+|.+|..... . .....+..++
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~ 145 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIA 145 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEE
Confidence 543321 111233455555 11233433333445558888887532 1 2345678888
Q ss_pred eccCCCeEEEEe
Q 017421 314 FNPCNKYLIIYL 325 (372)
Q Consensus 314 ~s~~g~~l~~~~ 325 (372)
|. ++.++.+.
T Consensus 146 ~~--~~~i~v~~ 155 (275)
T PF00780_consen 146 FL--GNKICVGT 155 (275)
T ss_pred Ee--CCEEEEEe
Confidence 88 45565553
No 402
>PHA03098 kelch-like protein; Provisional
Probab=95.31 E-value=1.3 Score=42.97 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCCEEEEEeCCC------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc
Q 017421 134 ADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGT 202 (372)
Q Consensus 134 ~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~ 202 (372)
.++..++.|+.++ .+..||..+..-... ............+.+ +++.++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKV-PELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeEC-CCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3466667776542 577888877643221 111111112222222 56777777765 347778887765
Q ss_pred eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeEEE--EeecCCCCeEE
Q 017421 203 MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEANKLSL--RILAHTSDVNT 274 (372)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~ 274 (372)
........... .+| +++ .-+++.++.|+.+ ..+..||..+++-.. .+...... .+
T Consensus 370 W~~~~~lp~~r----------~~~-----~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~ 432 (534)
T PHA03098 370 WREEPPLIFPR----------YNP-----CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GC 432 (534)
T ss_pred eeeCCCcCcCC----------ccc-----eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ce
Confidence 43322211110 011 111 1246666776632 358899988764321 11111111 12
Q ss_pred EEEeCCCCCEEEEEeCC--------CeEEEEeccc
Q 017421 275 VCFGDESGHLIYSGSDD--------NLCKVNSVLL 301 (372)
Q Consensus 275 ~~~sp~~~~~l~s~~~d--------g~i~vwd~~~ 301 (372)
++. .++.+++.|+.+ ..+.+||..+
T Consensus 433 ~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 433 AIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred EEE--ECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 333 356677777643 2378888763
No 403
>PHA02713 hypothetical protein; Provisional
Probab=95.27 E-value=0.32 Score=47.25 Aligned_cols=145 Identities=15% Similarity=0.082 Sum_probs=75.7
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC------------------
Q 017421 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP------------------ 191 (372)
Q Consensus 135 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------ 191 (372)
+|+..+.|+.++ .+..||..++.-... ............+.+ +++..+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 577777887654 478899887632211 111111111222222 577777777542
Q ss_pred -----eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC------CeEEEEECCC-C
Q 017421 192 -----IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD------DCIYVYDLEA-N 259 (372)
Q Consensus 192 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d------g~i~iwd~~~-~ 259 (372)
.+..||..+.+-.......... .....+. -+++..+.|+.+ ..+..||..+ .
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r--------------~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~ 491 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGT--------------IRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYN 491 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccc--------------ccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCC
Confidence 4667777776543332221110 0111122 246666777643 2467899886 3
Q ss_pred --eEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--eEEEEeccc
Q 017421 260 --KLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN--LCKVNSVLL 301 (372)
Q Consensus 260 --~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg--~i~vwd~~~ 301 (372)
..+..+...... ..++. -++++.++|+.++ .+..||+.+
T Consensus 492 ~W~~~~~m~~~r~~-~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 492 GWELITTTESRLSA-LHTIL--HDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CeeEccccCccccc-ceeEE--ECCEEEEEeeecceeehhhcCccc
Confidence 333344332222 23333 3688999999888 566666653
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.14 E-value=1.6 Score=42.92 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEE------eee-------------cccCCcceEEEEECC--CCCEEEEEeCCCeEE
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQK------DIL-------------AKSLRWTVTDTSLSP--DQRHLVYASMSPIVH 194 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~------~~~-------------~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 194 (372)
+++++++. .+.|.||++..-..... ... .......|..+.... ....|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66777765 57899999865322110 000 000112344554443 456788899999999
Q ss_pred EEECCCCcee--ee-cceeecccccceeccCCCCccccEEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--eE-EEEee
Q 017421 195 IVDVGSGTME--SL-ANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAGSSDDCIYVYDLEAN--KL-SLRIL 266 (372)
Q Consensus 195 vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~s~dg~i~iwd~~~~--~~-~~~~~ 266 (372)
+|.+++--.. .. .............|.-.-.-...++.++++ ...++||+++....|.||-.... +. ...-.
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 9976321000 00 000000000000010000122478899998 77889999988888888765432 11 11111
Q ss_pred cCCCCeEEEEEeCCC----CC-EEEEEeCCCeEEEEecc
Q 017421 267 AHTSDVNTVCFGDES----GH-LIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 267 ~~~~~v~~~~~sp~~----~~-~l~s~~~dg~i~vwd~~ 300 (372)
.+...|.+|+|-+.+ |. .+++++-.|.+-+|++.
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 255678899997332 32 77788899999998883
No 405
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.03 E-value=1.7 Score=35.95 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=63.9
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---C---eEEEE-
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---D---CIYVY- 254 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g---~i~iw- 254 (372)
..|+.+...+.|.+|++.+..+.....+... +.|..+.++..|++|+|--.+ . .+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 4555556678899999985555444433322 379999999999999986433 2 45654
Q ss_pred --ECC--CCeEEE-EeecC---------------------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 255 --DLE--ANKLSL-RILAH---------------------TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 255 --d~~--~~~~~~-~~~~~---------------------~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
... ..+++. .+.+| ..++.+++-.|-.|++++.+ ++++.+|.+.
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~ 163 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLK 163 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEE
Confidence 222 111111 12221 34667888887788877644 6788888876
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.01 E-value=3 Score=38.72 Aligned_cols=150 Identities=11% Similarity=0.090 Sum_probs=78.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCe-EEEEeeecccCCcceEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcee----
Q 017421 135 DGSLFVAGFQASQIRIYDVERGW-KIQKDILAKSLRWTVTDTSLSP-----DQRHLVYASMSPIVHIVDVGSGTME---- 204 (372)
Q Consensus 135 ~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~~---- 204 (372)
+...|++|+..|.++||+..... .............+|..+..-+ +...||+ -.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986543 1112223334455787776643 2234444 45677888887321110
Q ss_pred --eecceeecccccceeccCCCCccccEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 205 --SLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----D-GRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 205 --~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
........|. -......++.-| . ..+|.+-+.||.+.+|+-+.-.....+.. ---...+.|
T Consensus 115 ~~~~L~~~yeh~-----------l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y 182 (418)
T PF14727_consen 115 NQYQLELIYEHS-----------LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCY 182 (418)
T ss_pred cEEEEEEEEEEe-----------cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEE
Confidence 0001111100 011233333322 2 35777889999999998775443333332 112223455
Q ss_pred eCCCCCEEEEEeCCCeEEEEe
Q 017421 278 GDESGHLIYSGSDDNLCKVNS 298 (372)
Q Consensus 278 sp~~~~~l~s~~~dg~i~vwd 298 (372)
. +.-..|++++.+..|.-|.
T Consensus 183 ~-~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 183 C-PRTDSFVTASSSWTLECYK 202 (418)
T ss_pred e-ecCCEEEEecCceeEEEec
Confidence 5 4445555555554554444
No 407
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.97 E-value=1.7 Score=43.38 Aligned_cols=84 Identities=20% Similarity=0.329 Sum_probs=53.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEEC-CC-C--------ceeeecceeecccccceeccCCCCccccEEEEEEcCC-
Q 017421 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDV-GS-G--------TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD- 238 (372)
Q Consensus 170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~-~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~- 238 (372)
-.|..+.++|+|++++..+..|.+ |..+ +. | +.....+...... ..|. ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-~~~~----~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDE-RFFT----SNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEech-hhcc----CCCCceEEEEEEcCCC
Confidence 468999999999999998886644 4333 21 1 1100000000000 0011 123458999999996
Q ss_pred --CCEEEEEeCCCeEEEEECCCC
Q 017421 239 --GRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 239 --~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+..|++-+.|+++++||+...
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCC
Confidence 478888899999999999754
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.95 E-value=3 Score=38.44 Aligned_cols=182 Identities=10% Similarity=0.040 Sum_probs=85.7
Q ss_pred EEEECCCCCEEEEE--eCC----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-------------
Q 017421 129 VSQFSADGSLFVAG--FQA----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM------------- 189 (372)
Q Consensus 129 ~~~~s~~~~~l~~~--~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------- 189 (372)
.+-.-|+|+.++++ ..+ |-+.++|-++.+....-....+....-..+-|.|..+.++++..
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 34455788888774 222 45777777765443332222222333467778888888887653
Q ss_pred -------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEc--CCCCEEEEE-eCCCeEEEEEC-CC
Q 017421 190 -------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS--TDGRELVAG-SSDDCIYVYDL-EA 258 (372)
Q Consensus 190 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s--p~~~~l~s~-s~dg~i~iwd~-~~ 258 (372)
...+.+||+.+.+.++...+.... .....+.|. |+..+=+++ ....+|..|-- ..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTE--------------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCC--------------CceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 257999999999887666543211 134456664 444443333 33455555543 33
Q ss_pred Ce----EEEEeec----------C-------CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEeccccc-------------
Q 017421 259 NK----LSLRILA----------H-------TSDVNTVCFGDESGHLIYSGS-DDNLCKVNSVLLLT------------- 303 (372)
Q Consensus 259 ~~----~~~~~~~----------~-------~~~v~~~~~sp~~~~~l~s~~-~dg~i~vwd~~~~~------------- 303 (372)
++ .+..+.. . ..-|+.+..| .|.++|...+ .+|.|+.||+.-..
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS-lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~ 358 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS-LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGS 358 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE--TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTT
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcE
Confidence 32 2222221 0 2457899999 8888888776 68999999986100
Q ss_pred ------------CCCCCeeEEEeccCCCeEEEEe
Q 017421 304 ------------RSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 304 ------------~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
.......-+..|.||+.|...+
T Consensus 359 ~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 359 IRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 1122346788999999998763
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=1.8 Score=39.79 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=66.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----EeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---
Q 017421 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSL----RILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL--- 300 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~--- 300 (372)
++|.++.|++|.+.||+--.+.+|.+++....+... +.+.....|....|+ .+ .-+|.....| +-+|-..
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~-~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT-SS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe-cC-eeEEEEecCC-eEEEEEchhh
Confidence 489999999999999999999999999985443222 222334468889998 44 5555554444 5555542
Q ss_pred ----cccCCCCCeeEEEeccCCCeEEEEe
Q 017421 301 ----LLTRSINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 301 ----~~~~~~~~v~~~~~s~~g~~l~~~~ 325 (372)
..+.+...|.-..|.|+.+.+..++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeec
Confidence 3457788888899999887665553
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.80 E-value=4.9 Score=40.20 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCC----------Ce-E-EEEe------eecccCCcceEEEEECCC---CC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVER----------GW-K-IQKD------ILAKSLRWTVTDTSLSPD---QR 182 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----------~~-~-~~~~------~~~~~~~~~v~~~~~~~~---~~ 182 (372)
.-.|..+.++|+|++|+..+..| |.|-.+.. +. . .... .........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34788999999999998888755 44444421 11 1 1111 112234457899999995 58
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 017421 183 HLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 183 ~l~~~~~dg~i~vwd~~~~~ 202 (372)
+|++-+.|+.+++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997543
No 411
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.38 E-value=3.7 Score=36.94 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=87.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCc------EEEEeCCCC----e--EEEEeeecccCCc--------ceEEEEECCCCCE
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQ------IRIYDVERG----W--KIQKDILAKSLRW--------TVTDTSLSPDQRH 183 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~------i~vwd~~~~----~--~~~~~~~~~~~~~--------~v~~~~~~~~~~~ 183 (372)
-+.+.++.+.+++..+++.+.+|. +..+++... . .......+....+ ..-++++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 466788999876656666666676 555555431 0 1111111111111 3447888778888
Q ss_pred EEEEeCC------CeEEEEECCCCceeeecceeecccccceecc--CCCCccccEEEEEEcCCCCEEEEEeC-----CC-
Q 017421 184 LVYASMS------PIVHIVDVGSGTMESLANVTEIHDGLDFSAA--DDGGYSFGIFSLKFSTDGRELVAGSS-----DD- 249 (372)
Q Consensus 184 l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~~~~sp~~~~l~s~s~-----dg- 249 (372)
+++.=.+ ..|..++.. |.......++... ..... .........-.|+++|+|+.|+++.+ |+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~---~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAF---LPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccccc---ccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 7776666 788888876 5543333222111 00000 11123457889999999996655432 22
Q ss_pred ----------eEEEEECCC-CeEE----EEeec-----CCCCeEEEEEeCCCCCEEEE
Q 017421 250 ----------CIYVYDLEA-NKLS----LRILA-----HTSDVNTVCFGDESGHLIYS 287 (372)
Q Consensus 250 ----------~i~iwd~~~-~~~~----~~~~~-----~~~~v~~~~~sp~~~~~l~s 287 (372)
.|..||..+ ++.. ..+.. ....|..+.+- +++++|+.
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvL 231 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVL 231 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEE
Confidence 244455554 3222 22222 34678888888 88887764
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.33 E-value=2 Score=39.43 Aligned_cols=136 Identities=12% Similarity=0.087 Sum_probs=72.6
Q ss_pred ceEEEEECCCCCEEEEEe-----------CCC-eEEEEECCCC--ceeeecceeecccccceeccCCCCccccEEEEEEc
Q 017421 171 TVTDTSLSPDQRHLVYAS-----------MSP-IVHIVDVGSG--TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFS 236 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~s 236 (372)
....++|.++|+++++-. ..+ .|.+++-..+ +......+... ....+.+++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--------------l~~p~Gi~~~ 80 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--------------LSMVTGLAVA 80 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--------------CCCccceeEe
Confidence 467899999999877653 223 6766664322 22111111110 1245778998
Q ss_pred CCCCEEEEEeCCCeEEEE-ECCCC-----e--EEE-Eeec----CCCCeEEEEEeCCCCCEEEEEeCC------------
Q 017421 237 TDGRELVAGSSDDCIYVY-DLEAN-----K--LSL-RILA----HTSDVNTVCFGDESGHLIYSGSDD------------ 291 (372)
Q Consensus 237 p~~~~l~s~s~dg~i~iw-d~~~~-----~--~~~-~~~~----~~~~v~~~~~sp~~~~~l~s~~~d------------ 291 (372)
++| +++ ++.. .|..| |.... + .+. .+.. +......++|. |+|.+.++-+..
T Consensus 81 ~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 81 VGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred cCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC-CCCCEEEecccCCCceeccCCCcc
Confidence 988 444 3433 34434 54321 2 111 1222 12346789999 899877655421
Q ss_pred -------CeEEEEecccc-----cCCCCCeeEEEeccCCCeEEEE
Q 017421 292 -------NLCKVNSVLLL-----TRSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 292 -------g~i~vwd~~~~-----~~~~~~v~~~~~s~~g~~l~~~ 324 (372)
|.|.-++.... ...-.....++|+|+|+++++-
T Consensus 157 ~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred CcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 33444444321 1122335788999998887653
No 413
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.32 E-value=5.4 Score=38.56 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=65.7
Q ss_pred CCcEEEEeCCCCeEEEEeeecccC----------------------------Ccce-EEEEECCCCCEEEEEeCC-----
Q 017421 145 ASQIRIYDVERGWKIQKDILAKSL----------------------------RWTV-TDTSLSPDQRHLVYASMS----- 190 (372)
Q Consensus 145 dg~i~vwd~~~~~~~~~~~~~~~~----------------------------~~~v-~~~~~~~~~~~l~~~~~d----- 190 (372)
+|.|.-+|.++++.+-+....... ...+ ..+++.|...+++.+..+
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 678999999998776554332211 0112 234677766677666522
Q ss_pred C-----------eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCC---EEEEEeCCCeEEEEEC
Q 017421 191 P-----------IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR---ELVAGSSDDCIYVYDL 256 (372)
Q Consensus 191 g-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~---~l~s~s~dg~i~iwd~ 256 (372)
+ .|.-.|+++|+.+-.++. ..|....+... ....-+....+|+ .++.+..+|.+.+.|-
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~------~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr 332 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDYDGV------NEMILFDLKKDGKPRKLLAHADRNGFFYVLDR 332 (527)
T ss_pred CCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccccCC------CCcEEEEeccCCcEEEEEEEeCCCceEEEEEC
Confidence 1 567778888887544432 11222222111 1222233335665 7778999999999999
Q ss_pred CCCeEE
Q 017421 257 EANKLS 262 (372)
Q Consensus 257 ~~~~~~ 262 (372)
++++.+
T Consensus 333 ~tG~~i 338 (527)
T TIGR03075 333 TNGKLL 338 (527)
T ss_pred CCCcee
Confidence 999875
No 414
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.30 E-value=6.8 Score=39.68 Aligned_cols=182 Identities=10% Similarity=0.032 Sum_probs=110.2
Q ss_pred CCceEEEEECCCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeeec-ccCCcceEEEEECCC-CCEEEEE
Q 017421 124 TSRAYVSQFSADGSLFVAGFQA--------------SQIRIYDVERGWKIQKDILA-KSLRWTVTDTSLSPD-QRHLVYA 187 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~d--------------g~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-~~~l~~~ 187 (372)
......+++.+....+++.+.- ..++++|-++-+.+...... ...-..+.++.|..| +.++++|
T Consensus 714 ~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVG 793 (1096)
T KOG1897|consen 714 GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVG 793 (1096)
T ss_pred CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEE
Confidence 4455667777755444443321 13566666655333221111 111224666778887 6777777
Q ss_pred eC----------CCeEEEEECCC-CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 017421 188 SM----------SPIVHIVDVGS-GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDL 256 (372)
Q Consensus 188 ~~----------dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~ 256 (372)
+. .|.|.++.+.. ++........ -.+.+.++.- -+|+++|. -+..|++|++
T Consensus 794 T~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~---------------v~Gav~aL~~-fngkllA~--In~~vrLye~ 855 (1096)
T KOG1897|consen 794 TGLVYPDENEPVNGRIIVFEFEELNSLELVAETV---------------VKGAVYALVE-FNGKLLAG--INQSVRLYEW 855 (1096)
T ss_pred EEeeccCCCCcccceEEEEEEecCCceeeeeeee---------------eccceeehhh-hCCeEEEe--cCcEEEEEEc
Confidence 53 47788887776 2222111110 1124444432 24665543 3578999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc---------CCCCCeeEEEeccCCCeEEEE
Q 017421 257 EANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT---------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
.+.+.++.-..+..++..+... ..|..+++|.--+++.+-..+..+ -+..+++++.+-.+..++.+-
T Consensus 856 t~~~eLr~e~~~~~~~~aL~l~-v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae 931 (1096)
T KOG1897|consen 856 TTERELRIECNISNPIIALDLQ-VKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAE 931 (1096)
T ss_pred cccceehhhhcccCCeEEEEEE-ecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeec
Confidence 9987777777788899999998 899999999988888876655322 355677777776665555443
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.41 Score=48.59 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=87.1
Q ss_pred CceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEE--------EeeecccCCcceEEEEECCCC-CEEEEEeCCCeE
Q 017421 125 SRAYVSQFSADGSLFVAG--FQASQIRIYDVERGWKIQ--------KDILAKSLRWTVTDTSLSPDQ-RHLVYASMSPIV 193 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 193 (372)
-++..+...+|+...++. +.+-.|.+||+++-.... ..........-..++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 345556667777665543 334478899987531111 000111112235678888843 234556678888
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec----CC
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA----HT 269 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~ 269 (372)
++..+......... . ......++++|+|.|+.++.|...|++.-|-.. .+....+.. ..
T Consensus 181 ~V~~~~~~~~~v~s-~---------------p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~ 243 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTS-F---------------PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEEN 243 (1405)
T ss_pred hhhhhhhhhhhhcc-c---------------CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCC
Confidence 88776543321111 0 123478999999999999999999999888654 333333321 23
Q ss_pred CCeEEEEEeCCCCCEEEE
Q 017421 270 SDVNTVCFGDESGHLIYS 287 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s 287 (372)
..|.+|+|- ....++++
T Consensus 244 yrvl~v~Wl-~t~eflvv 260 (1405)
T KOG3630|consen 244 YRVLSVTWL-STQEFLVV 260 (1405)
T ss_pred cceeEEEEe-cceeEEEE
Confidence 678999998 66666554
No 416
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.21 E-value=0.28 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=25.6
Q ss_pred cEEEEEEcCCC---CEEEEEeCCCeEEEEECCCC
Q 017421 229 GIFSLKFSTDG---RELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 229 ~i~~~~~sp~~---~~l~s~s~dg~i~iwd~~~~ 259 (372)
.+.++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 68999999854 47887777899999999953
No 417
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.21 E-value=4.6 Score=37.35 Aligned_cols=98 Identities=9% Similarity=-0.054 Sum_probs=60.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----EEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-----LSLRILA--HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
..+..+.|.+++..++++ .+|.+. +....++ ....... ....++++.|. +++..+++| ..|.+....-.
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~-~d~~~~a~G-~~G~v~~s~D~ 356 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYR-SKKEAWAAG-GSGILLRSTDG 356 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEc-CCCcEEEEE-CCCcEEEeCCC
Confidence 368899999999877766 456543 3444443 1222221 12358889997 777666555 67766654321
Q ss_pred --c------ccCCCCCeeEEEeccCCCeEEEEeeeeE
Q 017421 301 --L------LTRSINPCNKYLFNPCNKYLIIYLILVI 329 (372)
Q Consensus 301 --~------~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 329 (372)
+ ........+.+.|.++++..+++..+.+
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 1 1223456889999998888888854444
No 418
>PHA02790 Kelch-like protein; Provisional
Probab=94.04 E-value=4.2 Score=38.80 Aligned_cols=141 Identities=8% Similarity=-0.009 Sum_probs=68.4
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC--CeEEEEECCCCceeeec
Q 017421 135 DGSLFVAGFQAS-----QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS--PIVHIVDVGSGTMESLA 207 (372)
Q Consensus 135 ~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~ 207 (372)
++..+++|+.++ .+..||..++.-.... ...........+. -++...+.|+.+ ..+..||..+++.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~-~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP-PMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC-CCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455667777543 4677888776322211 1111111122222 366777777753 35777887665433222
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeEEEE--eecCCCCeEEEEEeCCCC
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD---CIYVYDLEANKLSLR--ILAHTSDVNTVCFGDESG 282 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~ 282 (372)
...... .....+. -+|+..+.|+.++ .+..||.++++-... +...... .+++. -++
T Consensus 348 ~l~~~r--------------~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~--~~~ 408 (480)
T PHA02790 348 SLLKPR--------------CNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALV--FGR 408 (480)
T ss_pred CCCCCC--------------cccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEE--ECC
Confidence 221110 0111222 3567777777543 477888876643221 1111111 12222 356
Q ss_pred CEEEEEeCCCeEEEEecc
Q 017421 283 HLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 283 ~~l~s~~~dg~i~vwd~~ 300 (372)
++.+.|+ .+.+||.+
T Consensus 409 ~IYv~GG---~~e~ydp~ 423 (480)
T PHA02790 409 RLFLVGR---NAEFYCES 423 (480)
T ss_pred EEEEECC---ceEEecCC
Confidence 6666663 46778876
No 419
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=1.6 Score=40.89 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=53.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEC---------CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDV---------GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-- 239 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-- 239 (372)
.|..+..++.|..++.++.+|.+.++=. +.|+.....+....... .|... ..-.+..++|+|+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss----~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSS----TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccC----CceeeeeccccCCccC
Confidence 5778888999999999999997655431 22322111111111000 01110 11256778999975
Q ss_pred -CEEEEEeCCCeEEEEECCCCeEEE
Q 017421 240 -RELVAGSSDDCIYVYDLEANKLSL 263 (372)
Q Consensus 240 -~~l~s~s~dg~i~iwd~~~~~~~~ 263 (372)
..|..-+.|..|++||+.....+.
T Consensus 180 D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhh
Confidence 577777889999999998766543
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.88 E-value=0.44 Score=40.05 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=50.7
Q ss_pred CCCCEEEEEeCCCeEEEEeccccc--------------------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEe
Q 017421 280 ESGHLIYSGSDDNLCKVNSVLLLT--------------------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLD 339 (372)
Q Consensus 280 ~~~~~l~s~~~dg~i~vwd~~~~~--------------------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw 339 (372)
.++++|++.+.+|.+++||+.+.+ .....|..+.++.+|.-+++-+.+....|+..+..|
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~W 99 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGCW 99 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccccee
Confidence 568889999999999999997322 244678889999999988888877888899998888
Q ss_pred ec
Q 017421 340 NY 341 (372)
Q Consensus 340 ~~ 341 (372)
-.
T Consensus 100 ~~ 101 (219)
T PF07569_consen 100 IR 101 (219)
T ss_pred EE
Confidence 54
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.77 E-value=1.4 Score=39.79 Aligned_cols=53 Identities=21% Similarity=0.259 Sum_probs=34.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe-eecccCCcceEEEEECCC
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWK---IQKD-ILAKSLRWTVTDTSLSPD 180 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~-~~~~~~~~~v~~~~~~~~ 180 (372)
..+.|+|.|||++|++ ...|.|++++ ..+.. +... ............++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 4678999999987665 5689999999 44433 1111 111223346889999994
No 422
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.63 E-value=6.1 Score=36.80 Aligned_cols=200 Identities=13% Similarity=0.024 Sum_probs=99.9
Q ss_pred EEEECCCCCEEEEEeCCC-----------cEEEEeCCCCeEEEEeeecccCCcc-eEEEEECCCCCEEEEEeC---C-Ce
Q 017421 129 VSQFSADGSLFVAGFQAS-----------QIRIYDVERGWKIQKDILAKSLRWT-VTDTSLSPDQRHLVYASM---S-PI 192 (372)
Q Consensus 129 ~~~~s~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~---d-g~ 192 (372)
.+.|.++++.|+....+. .|+.|.+.+.......+........ ...+..++|+++++.... + ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999988877664333 3778887765332122222222222 568889999999876433 2 45
Q ss_pred EEEEECCCCc--eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeE---EEE
Q 017421 193 VHIVDVGSGT--MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS---DDCIYVYDLEANKL---SLR 264 (372)
Q Consensus 193 i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~---dg~i~iwd~~~~~~---~~~ 264 (372)
+.+.++..+. ......+.... .+....+... .+.+++.... .+.|...++..... ...
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~-------------~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPRE-------------DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESS-------------SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCC-------------CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeE
Confidence 7888887651 00111111100 0122233333 3444443322 35677788876652 234
Q ss_pred eecCCCC--eEEEEEeCCCCCEEEEEeCCC--eEEEEecc-ccc------CCCCCeeEEEeccCCCeEEEEeeeeEEEee
Q 017421 265 ILAHTSD--VNTVCFGDESGHLIYSGSDDN--LCKVNSVL-LLT------RSINPCNKYLFNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 265 ~~~~~~~--v~~~~~sp~~~~~l~s~~~dg--~i~vwd~~-~~~------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d 333 (372)
+..+... +..+... .+.+++....++ .|+++++. ... ...+.|..+...+++..+.....+.+ -.
T Consensus 320 l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~--~P 395 (414)
T PF02897_consen 320 LIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT--TP 395 (414)
T ss_dssp EE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT--EE
T ss_pred EcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC--CC
Confidence 5556554 4444443 344455555554 47888887 321 22334566666666665554421111 23
Q ss_pred ceEEEeecccceE
Q 017421 334 PNILLDNYFLLRT 346 (372)
Q Consensus 334 ~~i~lw~~~~~~~ 346 (372)
+++..+|+.+++.
T Consensus 396 ~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 396 PTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEEETTTTCE
T ss_pred CEEEEEECCCCCE
Confidence 6777778877764
No 423
>PRK10115 protease 2; Provisional
Probab=93.59 E-value=4.3 Score=40.65 Aligned_cols=112 Identities=10% Similarity=0.032 Sum_probs=67.3
Q ss_pred cceEEEEECCCCCEEEEEeCC-----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEE
Q 017421 170 WTVTDTSLSPDQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVA 244 (372)
Q Consensus 170 ~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s 244 (372)
..+..+.|+||+++|+.+... -.|++.|+.++....... . . .-..++|.+|++.|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-----~-----------~--~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-----D-----------N--VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-----c-----------C--cceEEEEeeCCCEEEE
Confidence 357788999999998876442 358888998775311110 0 0 1145899999987765
Q ss_pred EeCC------CeEEEEECCCC--eEEEEeecCCCCeEEEEEeCCCCCEEEEEeC---CCeEEEEec
Q 017421 245 GSSD------DCIYVYDLEAN--KLSLRILAHTSDVNTVCFGDESGHLIYSGSD---DNLCKVNSV 299 (372)
Q Consensus 245 ~s~d------g~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd~ 299 (372)
...+ ..|+.+++.++ +....+........-..+.+.++++++..+. ++.+.+++.
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 5432 36888899887 3333333323333323344257777665443 356788774
No 424
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.56 E-value=4.4 Score=34.87 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=115.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCce
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 203 (372)
......++-+|||..-.++...+.|-=.|..+++.... ..+.......+...||+...++-+.. .|.-.|-++...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence 34566788899998888888888888888888855443 22334457788899999877765443 455566655554
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeec-CCCCeEEEEEeCCCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILA-HTSDVNTVCFGDESG 282 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~ 282 (372)
..... ...+ -........|.+.|++-+++.. |.-=-.|-.++ .+..+.. .....+.|+.. |+|
T Consensus 137 t~f~l-p~~~------------a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~at-pdG 200 (353)
T COG4257 137 TRFPL-PLEH------------ADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICAT-PDG 200 (353)
T ss_pred EEeec-cccc------------CCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEEC-CCC
Confidence 32221 1111 1235777889999998888763 21111111111 2222221 23355778888 899
Q ss_pred CEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEE-EeeeeEEEeeceEEEeec
Q 017421 283 HLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLII-YLILVISIYSPNILLDNY 341 (372)
Q Consensus 283 ~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~-~~~~~~~~~d~~i~lw~~ 341 (372)
..-++.-.++.|-..|..... ........+--+|.|+.-++ .....+..||.....|+-
T Consensus 201 svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 201 SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 888877677777776754221 11122233344555554333 234455556777776753
No 425
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.45 E-value=4.6 Score=34.76 Aligned_cols=155 Identities=8% Similarity=-0.068 Sum_probs=90.4
Q ss_pred CcceEEEEECCCCCEEEEEeCCC--eEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSP--IVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
..-...+.|..++.++-+.+.-| .|+.+|+.+++......+.... ---.++... ++.....=
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~---------------FgEGit~~~-d~l~qLTW 107 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY---------------FGEGITILG-DKLYQLTW 107 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------EEEEEEET-TEEEEEES
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc---------------cceeEEEEC-CEEEEEEe
Confidence 34466788877888888887766 6999999999876554433221 112233332 23333444
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CC---CCCeeEEEec
Q 017421 247 SDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RS---INPCNKYLFN 315 (372)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~---~~~v~~~~~s 315 (372)
.++...+||..+.+.+.++.- .+.=..++. +++.|+.......|+++|..++. .. -..++.+-|-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred cCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 578999999999998888763 344566663 56667777677889999987543 11 1234455554
Q ss_pred cCCCeEEEEeeeeEEEe-eceEEEeecccceEEEEEe
Q 017421 316 PCNKYLIIYLILVISIY-SPNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 316 ~~g~~l~~~~~~~~~~~-d~~i~lw~~~~~~~~~~~~ 351 (372)
+|...|-. | ...|..-|..+|+.+..+.
T Consensus 184 -~G~IyANV-------W~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 184 -NGKIYANV-------WQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp -TTEEEEEE-------TTSSEEEEEETTT-BEEEEEE
T ss_pred -cCEEEEEe-------CCCCeEEEEeCCCCeEEEEEE
Confidence 44433322 3 3556666777777765543
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.37 E-value=1.3 Score=41.07 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=53.7
Q ss_pred ccccCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE--ECCC---------------
Q 017421 118 WPVDQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--LSPD--------------- 180 (372)
Q Consensus 118 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~--------------- 180 (372)
..+......+.+++.+|++++.|+...-|.|.++|+..+..++. .++.+..-...- ..+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm---WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM---WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh---hccCccceEEEEEeecccccccccccccCCCCc
Confidence 34556677799999999999988888889999999998744432 333322110000 0000
Q ss_pred -CC-EEEEEeCCCeEEEEECCCCce
Q 017421 181 -QR-HLVYASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 181 -~~-~l~~~~~dg~i~vwd~~~~~~ 203 (372)
.. +++.+-..|.|.||.++.|..
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCE
Confidence 11 234456689999999998864
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.26 E-value=6.9 Score=36.24 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=82.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceee
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMES 205 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 205 (372)
....+..++++.+++++.....++-||-... .... . .......++++.|.+++..++++ ..|.+. +....+....
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~-~-~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQP-H-NRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEE-e-cCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 3455667888887777765332333443211 0011 1 12223468999999998877765 556653 4444443211
Q ss_pred ecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe---ecCCCCeEEEEEeCCCC
Q 017421 206 LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRI---LAHTSDVNTVCFGDESG 282 (372)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~ 282 (372)
...+.... ...-...+..+.|.+++..+++| ..|.+... ...++.-... ..-....+.+.|. +++
T Consensus 315 ~~~f~~~~---------~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~-~~~ 382 (398)
T PLN00033 315 DFDFEEAD---------IKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFF-DDK 382 (398)
T ss_pred ccceeecc---------cCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEc-CCC
Confidence 00111000 00011258889999888766665 46766554 3334321121 2234578899997 666
Q ss_pred CEEEEEeCCCeEEEE
Q 017421 283 HLIYSGSDDNLCKVN 297 (372)
Q Consensus 283 ~~l~s~~~dg~i~vw 297 (372)
+.+++| .+|.|.-|
T Consensus 383 ~g~~~G-~~G~il~~ 396 (398)
T PLN00033 383 KGFVLG-NDGVLLRY 396 (398)
T ss_pred ceEEEe-CCcEEEEe
Confidence 666655 67876554
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.16 E-value=0.9 Score=38.20 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=48.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------e-------cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 235 FSTDGRELVAGSSDDCIYVYDLEANKLSLRI-------L-------AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 235 ~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++ .+|.-+++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt-~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLT-SNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEc-CCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999998754332 1 244678888898 8888877765 5778888865
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.00 E-value=1.1 Score=41.44 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=58.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEE-EEEeCCCC---------------C--EEEEEe
Q 017421 228 FGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNT-VCFGDESG---------------H--LIYSGS 289 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp~~~---------------~--~l~s~~ 289 (372)
-.+.+++.+|++++.++...-|.|.++|+.++..++.+++..+.=.. +....... . +++.+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 35778999999998888877799999999999888888765442111 11110111 1 233455
Q ss_pred CCCeEEEEecccccCCCCCeeEEEeccCCCe
Q 017421 290 DDNLCKVNSVLLLTRSINPCNKYLFNPCNKY 320 (372)
Q Consensus 290 ~dg~i~vwd~~~~~~~~~~v~~~~~s~~g~~ 320 (372)
.-|.|.||.++.. ..|..+...+++++
T Consensus 388 rRg~lEvW~~~~g----~Rv~a~~v~k~~rL 414 (415)
T PF14655_consen 388 RRGILEVWSMRQG----PRVAAFNVGKGCRL 414 (415)
T ss_pred cCCeEEEEecCCC----CEEEEEEeCCCcEE
Confidence 7788999988643 45566655555443
No 430
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.93 E-value=5.8 Score=38.75 Aligned_cols=189 Identities=14% Similarity=0.053 Sum_probs=100.1
Q ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCC
Q 017421 133 SADGSLFVAGFQAS------QIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGS 200 (372)
Q Consensus 133 s~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~ 200 (372)
+..+.++++|+.++ .+..||..++.-.... ... ....-.+++.. ++...++|+.+ ..+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-PMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-CCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC
Confidence 44566777777763 6788888877322211 111 11123333433 45778888888 3578888888
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD-----CIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
++-.......... + ...... -+|...++|+.|| +|..||..+.+-... ..+.......
T Consensus 359 ~~W~~~a~M~~~R------------~--~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~ 421 (571)
T KOG4441|consen 359 NQWTPVAPMNTKR------------S--DFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGH 421 (571)
T ss_pred CceeccCCccCcc------------c--cceeEE--ECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeee
Confidence 7754333222211 1 111111 2477778888886 488888877653211 1122233333
Q ss_pred EEeCCCCCEEEEEeCCC------eEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEe------eeeEEEeece
Q 017421 276 CFGDESGHLIYSGSDDN------LCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYL------ILVISIYSPN 335 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg------~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~------~~~~~~~d~~ 335 (372)
....-+|.+.++|+.++ ++..||..+.. ..... ..++ .-++...++|+ ..++..||..
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCC
Confidence 33224788888888654 46677766322 11111 1122 23345545443 2236668887
Q ss_pred EEEeeccc
Q 017421 336 ILLDNYFL 343 (372)
Q Consensus 336 i~lw~~~~ 343 (372)
-.-|..-.
T Consensus 500 ~~~W~~v~ 507 (571)
T KOG4441|consen 500 TNQWTMVA 507 (571)
T ss_pred CCceeEcc
Confidence 77787654
No 431
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.86 E-value=6.5 Score=34.87 Aligned_cols=127 Identities=18% Similarity=0.219 Sum_probs=79.5
Q ss_pred eEEEEECCCCCEEEEEe------------------CCCeEEEEECCCCceeeecceeeccccccee----ccC-------
Q 017421 172 VTDTSLSPDQRHLVYAS------------------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS----AAD------- 222 (372)
Q Consensus 172 v~~~~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~------- 222 (372)
...+.+.++|..|++.. .|+.+...|+++++.+.............+. +..
T Consensus 59 ~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~ 138 (299)
T PF14269_consen 59 HHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSS 138 (299)
T ss_pred ccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCC
Confidence 45556666776666221 2456777788888875554332221111111 000
Q ss_pred CCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCC-C----eEEEEEeCCCCCEEEEEeCCCeEEEE
Q 017421 223 DGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTS-D----VNTVCFGDESGHLIYSGSDDNLCKVN 297 (372)
Q Consensus 223 ~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~----v~~~~~sp~~~~~l~s~~~dg~i~vw 297 (372)
....-.-+++|...++|.+|++.-.-..|.+.|-++++.+..+.+... . -...+|. .+-+++-.+..++.|.++
T Consensus 139 ~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~Q-Hdar~~~~~~~~~~IslF 217 (299)
T PF14269_consen 139 FPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQ-HDARFLNESNDDGTISLF 217 (299)
T ss_pred CCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeec-cCCEEeccCCCCCEEEEE
Confidence 011223477888888999999998889999999999999888865411 1 1225555 666666666778889999
Q ss_pred ec
Q 017421 298 SV 299 (372)
Q Consensus 298 d~ 299 (372)
|-
T Consensus 218 DN 219 (299)
T PF14269_consen 218 DN 219 (299)
T ss_pred cC
Confidence 86
No 432
>PRK10115 protease 2; Provisional
Probab=92.86 E-value=11 Score=37.70 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=48.3
Q ss_pred CceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeE
Q 017421 125 SRAYVSQFSADGSLFVAGFQ-----ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIV 193 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i 193 (372)
-.+..+.|+||+++|+.+.. ...|++.|+.++..+...+ .+. -..++|.+|++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNV---EPSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCc---ceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 34667889999999886533 2368899998774332211 111 1458999999877766542 367
Q ss_pred EEEECCCC
Q 017421 194 HIVDVGSG 201 (372)
Q Consensus 194 ~vwd~~~~ 201 (372)
+.+++.++
T Consensus 202 ~~h~lgt~ 209 (686)
T PRK10115 202 WRHTIGTP 209 (686)
T ss_pred EEEECCCC
Confidence 77888777
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.77 E-value=0.019 Score=52.51 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=96.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEE-EeCCCeEEEEECCCCce
Q 017421 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVY-ASMSPIVHIVDVGSGTM 203 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~ 203 (372)
.......|-|++.-++.++.+..+..||-... ..... ..+.....++|..++..++. +-..+.+.+||+.+...
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 33444578887777888888889999996543 22221 22234667888887776554 45578899999987553
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCC
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGH 283 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 283 (372)
..+..-. .|.... +.|++.+..++.+...|.+.|++..+.+.+...-.|...+++++|. +.+
T Consensus 110 qqLE~gg--------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~-lEd- 171 (615)
T KOG2247|consen 110 QQLESGG--------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT-LED- 171 (615)
T ss_pred HHHhccC--------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec-ccc-
Confidence 3222210 122222 7889988889999889999999998776655554588999999998 444
Q ss_pred EEEEEeCC
Q 017421 284 LIYSGSDD 291 (372)
Q Consensus 284 ~l~s~~~d 291 (372)
+.+.++.|
T Consensus 172 ~vil~dcd 179 (615)
T KOG2247|consen 172 YVILCDCD 179 (615)
T ss_pred eeeecCcH
Confidence 33444434
No 434
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.66 E-value=5.6 Score=37.36 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe----eecccCCcceEEEEECCCC
Q 017421 124 TSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKD----ILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 124 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~ 181 (372)
-...+.|+|.|||++|++--..|.|++++..++...... ............|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 456788999999987776554699999986554321111 0011124468899999875
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=3.4 Score=38.12 Aligned_cols=144 Identities=11% Similarity=0.031 Sum_probs=82.7
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 128 YVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 128 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
+.+-|....+.|++ ...|.+.=|-+.....-..........++|.++.|++|.+.+++--.+..|.+++..........
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 33445443343433 33355666665432211111222334458999999999999999999999999998544332221
Q ss_pred ceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeecCCCCeEEEEEeCCCCCEEE
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN-KLSLRILAHTSDVNTVCFGDESGHLIY 286 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~l~ 286 (372)
...-. ..+..|....|+.+ .-+|..+..| +.+|.+... +.++..+.|.-.|.=..|. ++.+.+.
T Consensus 105 ~~~ck------------~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc-~et~v~L 169 (657)
T KOG2377|consen 105 TQECK------------TKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYC-PETAVIL 169 (657)
T ss_pred HHHhc------------cCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEc-cccceEe
Confidence 11100 11235888889865 5566555434 667765433 2344455677777777787 6655444
Q ss_pred E
Q 017421 287 S 287 (372)
Q Consensus 287 s 287 (372)
.
T Consensus 170 L 170 (657)
T KOG2377|consen 170 L 170 (657)
T ss_pred e
Confidence 3
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=92.56 E-value=7.7 Score=35.02 Aligned_cols=143 Identities=15% Similarity=0.070 Sum_probs=79.6
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEE-ECCCCc-eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIV-DVGSGT-MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS 246 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s 246 (372)
...+..+.+.|++.+++++ ..|.+..- +- .++ -..... +-...++.+.+.|+++.++++.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~----------------~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQR----------------NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeC----------------CCcccceeeeEcCCCCEEEEec
Confidence 3468899999988766555 45655432 21 121 111111 1223788999999998777664
Q ss_pred CCCeEEEEECCCCeEEEEeec----CCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc---cc------cCCCCCeeEEE
Q 017421 247 SDDCIYVYDLEANKLSLRILA----HTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL---LL------TRSINPCNKYL 313 (372)
Q Consensus 247 ~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~---~~------~~~~~~v~~~~ 313 (372)
.|.+.+=..+.+..-..... ....+.++.+. +++..++++ .+|.+.. ... +. .......+.+.
T Consensus 234 -~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~-~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~ 309 (334)
T PRK13684 234 -GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYR-TPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIV 309 (334)
T ss_pred -CCEEEEccCCCCCccccccCCccccccceeeEEEc-CCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEE
Confidence 57654322333332111111 12357888998 667665554 5675543 221 11 12223577888
Q ss_pred eccCCCeEEEEeeeeEEEee
Q 017421 314 FNPCNKYLIIYLILVISIYS 333 (372)
Q Consensus 314 ~s~~g~~l~~~~~~~~~~~d 333 (372)
|..+++.++++..+.|-.++
T Consensus 310 ~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 310 FLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred EeCCCceEEECCCceEEEec
Confidence 88888888888655544444
No 437
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.07 E-value=0.21 Score=49.31 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=84.2
Q ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEE-----------EECCCCCEEEEEeCCCeEEE
Q 017421 127 AYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDT-----------SLSPDQRHLVYASMSPIVHI 195 (372)
Q Consensus 127 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~v 195 (372)
|..+-|.++.-++..+-.++.|++........ . ...+|...++.+ ..+|||..++.++.||.++.
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 33334445667777788888988887765321 1 122344333332 36899999999999999999
Q ss_pred EECCCCce--eeecceeecccccceeccCCCCccccEEEEEEcCC-------C--CEEEEEeC-CCeEEEEECCCCeEEE
Q 017421 196 VDVGSGTM--ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD-------G--RELVAGSS-DDCIYVYDLEANKLSL 263 (372)
Q Consensus 196 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~-------~--~~l~s~s~-dg~i~iwd~~~~~~~~ 263 (372)
|.+.-... ......++.|. +|. .++.+ ++.+ + .++++++. +..+++|.....+|+
T Consensus 262 ~Qiyi~g~~~~rclhewkphd----------~~p-~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl- 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHD----------KHP-RVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL- 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCC----------CCC-ceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh-
Confidence 98753221 11122222222 111 22222 3221 1 24455554 456999998888876
Q ss_pred EeecCCCCeEEEEEeCCCCCE------------EEEEeCCCeEEEEecc
Q 017421 264 RILAHTSDVNTVCFGDESGHL------------IYSGSDDNLCKVNSVL 300 (372)
Q Consensus 264 ~~~~~~~~v~~~~~sp~~~~~------------l~s~~~dg~i~vwd~~ 300 (372)
+......|..+. |+++.. ++.-+.++.|.+|.-+
T Consensus 329 -l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 329 -LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred -hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 222223344444 455542 2334567888888644
No 438
>PHA03098 kelch-like protein; Provisional
Probab=91.89 E-value=2.5 Score=41.01 Aligned_cols=67 Identities=9% Similarity=0.059 Sum_probs=35.6
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCC------CeEEEEECCCCce
Q 017421 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMS------PIVHIVDVGSGTM 203 (372)
Q Consensus 135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~ 203 (372)
+++.++.|+.+ ..+..||..++.-... ............+. -+++.++.|+.+ ..+..||+.+++.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 57777888765 3577888876532211 11111111111222 256667777632 4578899887654
Q ss_pred e
Q 017421 204 E 204 (372)
Q Consensus 204 ~ 204 (372)
.
T Consensus 419 ~ 419 (534)
T PHA03098 419 S 419 (534)
T ss_pred e
Confidence 3
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.17 E-value=11 Score=33.96 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=56.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCce-eeecceeecccccceeccCCCCccccEEEEEEcCC----CCEEEEE
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTM-ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD----GRELVAG 245 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~----~~~l~s~ 245 (372)
..++|+|.||++++++ ...|.|++++ ..+.. .......... .........++++|+ +.+.++.
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~----------~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVF----------ADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTB----------TSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccccccc----------ccccCCcccceeccccCCCCEEEEEE
Confidence 3688999999877664 6699999999 44433 1111111100 023347899999994 3333333
Q ss_pred eCC--------CeEEEEECCCC-------eEE-EEeec---CCCCeEEEEEeCCCCCEEEEEeCC
Q 017421 246 SSD--------DCIYVYDLEAN-------KLS-LRILA---HTSDVNTVCFGDESGHLIYSGSDD 291 (372)
Q Consensus 246 s~d--------g~i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~sp~~~~~l~s~~~d 291 (372)
+.. ..|.-|....+ +.+ ..+.. ....-..|.|. |+|.+.++.+..
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG~LYvs~G~~ 134 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDGKLYVSVGDG 134 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTSEEEEEEB-T
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCCcEEEEeCCC
Confidence 321 23444544433 111 12222 22345679999 899777766543
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.85 E-value=5.8 Score=30.15 Aligned_cols=106 Identities=9% Similarity=0.056 Sum_probs=67.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC--------eEEEEeecCCCCeEEEEEeC---C-CCCEEEEEeCCCeEEEEeccc
Q 017421 234 KFSTDGRELVAGSSDDCIYVYDLEAN--------KLSLRILAHTSDVNTVCFGD---E-SGHLIYSGSDDNLCKVNSVLL 301 (372)
Q Consensus 234 ~~sp~~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~sp---~-~~~~l~s~~~dg~i~vwd~~~ 301 (372)
.|.....-|++++..|.|.|++.... ..+..+. -...|++++-.+ . ....|+.| ....|..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEccc
Confidence 45555556888888899999987533 2333333 445677776542 2 34466666 466799999873
Q ss_pred -----ccCCCCCeeEEEecc----CCCeEEEEeeeeEEEee--ceEEEeec
Q 017421 302 -----LTRSINPCNKYLFNP----CNKYLIIYLILVISIYS--PNILLDNY 341 (372)
Q Consensus 302 -----~~~~~~~v~~~~~s~----~g~~l~~~~~~~~~~~d--~~i~lw~~ 341 (372)
.+.....|.++.+-. ...+++++....+.-|| +.=.+|.+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 234456677776632 34577777777777766 66677765
No 441
>PHA02790 Kelch-like protein; Provisional
Probab=90.47 E-value=10 Score=36.21 Aligned_cols=133 Identities=12% Similarity=0.044 Sum_probs=63.8
Q ss_pred CCCCEEEEEeCC--CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCC---eEEEEECCCCceeeecc
Q 017421 134 ADGSLFVAGFQA--SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSP---IVHIVDVGSGTMESLAN 208 (372)
Q Consensus 134 ~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 208 (372)
-++...++|+.+ ..+..||..++.-... ............+.. +++..+.|+.++ .+..||.+++.-.....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~-~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNM-PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEEC-CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 357777787754 3577888765522211 111111111222222 577777777543 46678887765433222
Q ss_pred eeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEE--EEeecCCCCeEEEEEeCCCCCEEE
Q 017421 209 VTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLS--LRILAHTSDVNTVCFGDESGHLIY 286 (372)
Q Consensus 209 ~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~l~ 286 (372)
..... .....+. -+++..+.| |.+.+||.++++-. ..+...... .+++. -++++.+
T Consensus 394 m~~~r--------------~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~-~~~~v--~~~~IYv 451 (480)
T PHA02790 394 TYYPH--------------YKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN-PELII--VDNKLLL 451 (480)
T ss_pred CCCcc--------------ccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc-cEEEE--ECCEEEE
Confidence 11110 0111122 345555665 45778988766432 222111111 23333 3567777
Q ss_pred EEeCC
Q 017421 287 SGSDD 291 (372)
Q Consensus 287 s~~~d 291 (372)
.|+.+
T Consensus 452 iGG~~ 456 (480)
T PHA02790 452 IGGFY 456 (480)
T ss_pred ECCcC
Confidence 77654
No 442
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.41 E-value=6.2 Score=37.00 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=76.1
Q ss_pred CCCCCEEEE-EeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC--------CEEEEEeCC
Q 017421 178 SPDQRHLVY-ASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG--------RELVAGSSD 248 (372)
Q Consensus 178 ~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~--------~~l~s~s~d 248 (372)
..|.++|+. |.....++-.|++.|+.+....+.. .+ -+.|.|+. +.|+-.+ +
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~d-----------------dv-vVqy~p~~kf~qmt~eqtlvGlS-~ 536 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD-----------------DV-VVQYNPYFKFQQMTDEQTLVGLS-D 536 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCC-----------------cc-eeecCCchhHHhcCccceEEeec-c
Confidence 335555443 4445668888888888654443221 23 56666642 3344444 4
Q ss_pred CeEEEEECCC-CeEEEEeecCCCCeEEEEEeC---CCCCEEEEEeCCCeEEEEecc------cccCCCCCeeEEEeccCC
Q 017421 249 DCIYVYDLEA-NKLSLRILAHTSDVNTVCFGD---ESGHLIYSGSDDNLCKVNSVL------LLTRSINPCNKYLFNPCN 318 (372)
Q Consensus 249 g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp---~~~~~l~s~~~dg~i~vwd~~------~~~~~~~~v~~~~~s~~g 318 (372)
..|.-.|.+- |..+.... ....++.-.|+. ....++|.++..|-|++||.- .+.+....|..+..+.+|
T Consensus 537 ~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~G 615 (776)
T COG5167 537 YSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANG 615 (776)
T ss_pred cceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCC
Confidence 4444445542 32222211 122222222320 234589999999999999963 345677889999999999
Q ss_pred CeEEEEeeeeE
Q 017421 319 KYLIIYLILVI 329 (372)
Q Consensus 319 ~~l~~~~~~~~ 329 (372)
+++++.....+
T Consensus 616 k~ilaTCk~yl 626 (776)
T COG5167 616 KHILATCKNYL 626 (776)
T ss_pred cEEEEeecceE
Confidence 99887653333
No 443
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.16 E-value=3.6 Score=42.88 Aligned_cols=160 Identities=13% Similarity=0.001 Sum_probs=92.8
Q ss_pred ccccCCceeEeeeeeCCCCCccccCCCCceEEEEE--------CCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------e
Q 017421 98 RFSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQF--------SADGSLFVAGFQASQIRIYDVERGWKIQKD------I 163 (372)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~ 163 (372)
.+...|..+.+|++........+.+....|..+.. .|.=+++++.+.--.|.|+-+.-....... .
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 34777888999999998888889988888888863 333345544444466777765432111111 1
Q ss_pred ecccCCcceEEEEECCCCCEEEEEeCCCeEEEE--ECCCCceee---ecceeecc-cccc-eeccCCCCccccEEEEEEc
Q 017421 164 LAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIV--DVGSGTMES---LANVTEIH-DGLD-FSAADDGGYSFGIFSLKFS 236 (372)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~---~~~~~~~~-~~~~-~~~~~~~~h~~~i~~~~~s 236 (372)
...-....|.++....+|+.+++| .||.|+-. ....+=... ........ ..+. .-+.-.+++..+|..++..
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 111223468889877788766654 56644322 221111000 00000000 0000 0000002566799999998
Q ss_pred CCCCEEEEEeCCCeEEEEECCC
Q 017421 237 TDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 237 p~~~~l~s~s~dg~i~iwd~~~ 258 (372)
..-..+.+-+..|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888889999999999999976
No 444
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.90 E-value=20 Score=34.76 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=65.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCC-cce-------EEEEECCCCCEEEEEeCCCeEEEEECCCCceeeec
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLR-WTV-------TDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 207 (372)
+..|++++.++.|.-+|..+++.+.+........ ... ..+++ .+..++.++.++.+.-.|.++|+..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4566667777889999999887665533211100 000 01122 2346777888999999999999875444
Q ss_pred ceeecccccceeccCCCCccccEEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEEee
Q 017421 208 NVTEIHDGLDFSAADDGGYSFGIFS-LKFSTDGRELVAGS------SDDCIYVYDLEANKLSLRIL 266 (372)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~h~~~i~~-~~~sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~ 266 (372)
.......+ ..+.+ ... -++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 147 ~~~~~~~~------------~~~tssP~v-~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 147 KNGDYKAG------------YTITAAPLV-VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccccccc------------ccccCCcEE-ECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 32111000 01111 011 134 444443 26889999999998776643
No 445
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.90 E-value=2.3 Score=41.42 Aligned_cols=87 Identities=22% Similarity=0.128 Sum_probs=45.9
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc----eeeecceeec-----ccccceec-cCCCCccccEEEEEEcC----CCCEEEE
Q 017421 179 PDQRHLVYASMSPIVHIVDVGSGT----MESLANVTEI-----HDGLDFSA-ADDGGYSFGIFSLKFST----DGRELVA 244 (372)
Q Consensus 179 ~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~-----~~~~~~~~-~~~~~h~~~i~~~~~sp----~~~~l~s 244 (372)
++...++.+..||.+......... .......... ..++.... .....-...+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888999988888766411 1111100000 00000000 00111223455666666 6789999
Q ss_pred EeCCCeEEEEECCCCeEEEEe
Q 017421 245 GSSDDCIYVYDLEANKLSLRI 265 (372)
Q Consensus 245 ~s~dg~i~iwd~~~~~~~~~~ 265 (372)
.+.|+++++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986665
No 446
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.43 E-value=4.3 Score=34.62 Aligned_cols=131 Identities=15% Similarity=0.084 Sum_probs=70.1
Q ss_pred EEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC-C--CeEEEEECCC--CeEE-----E
Q 017421 194 HIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS-D--DCIYVYDLEA--NKLS-----L 263 (372)
Q Consensus 194 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~-d--g~i~iwd~~~--~~~~-----~ 263 (372)
.+||+.+++......... .....-.+-|||++|++|+. + ..+++++... +.+. .
T Consensus 49 ~~yD~~tn~~rpl~v~td----------------~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTD----------------TFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEecCCCcEEeccCCCC----------------CcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcc
Confidence 479999887654432111 12223356789999998875 2 3488888654 1110 0
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeCCC-eEEEEecccccC---------------CCCCeeEEEeccCCCeEEEEeee
Q 017421 264 RILAHTSDVNTVCFGDESGHLIYSGSDDN-LCKVNSVLLLTR---------------SINPCNKYLFNPCNKYLIIYLIL 327 (372)
Q Consensus 264 ~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-~i~vwd~~~~~~---------------~~~~v~~~~~s~~g~~l~~~~~~ 327 (372)
.+. ....-.++..- +||+.|+.|+.+. +..+|..+.... ....---+-..|+|+.++.+
T Consensus 113 ~m~-~~RWYpT~~~L-~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a--- 187 (243)
T PF07250_consen 113 DMQ-SGRWYPTATTL-PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA--- 187 (243)
T ss_pred ccc-CCCccccceEC-CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE---
Confidence 111 11222233334 7999999888664 344444321100 00111234556888888777
Q ss_pred eEEEeeceEEEeecccceEEEEE
Q 017421 328 VISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 328 ~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
+..-.|||+.+.+.++.|
T Consensus 188 -----n~~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 188 -----NRGSIIYDYKTNTVVRTL 205 (243)
T ss_pred -----cCCcEEEeCCCCeEEeeC
Confidence 334456677777665554
No 447
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.31 E-value=14 Score=36.50 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=34.6
Q ss_pred CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCC
Q 017421 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSG 201 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 201 (372)
-.|+||+.. |..+......++ ++..+.|+.+.. |++...+|++++|++-..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~---~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHG---ELIGMGWSDDEE-LICVQKDGTVHVYGLLGE 114 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCC---CeeeecccCCce-EEEEeccceEEEeecchh
Confidence 357888865 444444332222 688999997765 556678999999998644
No 448
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.05 E-value=22 Score=34.01 Aligned_cols=135 Identities=16% Similarity=0.119 Sum_probs=65.7
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeC-------------CCeEEEE
Q 017421 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASM-------------SPIVHIV 196 (372)
Q Consensus 130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~vw 196 (372)
+...++|.+++... ..+..+|+.. +.+.......+...-=..+...|+|++|+.+.. .-.|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56778998776555 6788888864 343332222211111245778899999988772 2236667
Q ss_pred ECCCCceeeecceeecccccce-----------eccCCCCccccEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 017421 197 DVGSGTMESLANVTEIHDGLDF-----------SAADDGGYSFGIFSLKFST-DGRELVAGSSDDCIYVYDLEANKLSLR 264 (372)
Q Consensus 197 d~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~i~~~~~sp-~~~~l~s~s~dg~i~iwd~~~~~~~~~ 264 (372)
| .+|+................ ........-.-++++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 7 77776555443332211111 0000112224588999999 444555554445888999888888777
Q ss_pred eecC
Q 017421 265 ILAH 268 (372)
Q Consensus 265 ~~~~ 268 (372)
+-.+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6544
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.97 E-value=3.6 Score=33.09 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.0
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 017421 229 GIFSLKFSTDG------RELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 229 ~i~~~~~sp~~------~~l~s~s~dg~i~iwd~~~ 258 (372)
.+..++|||.| -+|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999954 4788899999999998653
No 450
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.87 E-value=6.3 Score=39.02 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=74.1
Q ss_pred CceEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----eE-----EEEeeecccCCcceEEEEEC--CCCCEE
Q 017421 125 SRAYVSQFSA--DGSLFVAGFQASQIRIYDVER-------G----WK-----IQKDILAKSLRWTVTDTSLS--PDQRHL 184 (372)
Q Consensus 125 ~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~-------~----~~-----~~~~~~~~~~~~~v~~~~~~--~~~~~l 184 (372)
..|+.|.... +...|+.+..||.|.+|.++. . .. ..+..........+++++++ ...++|
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 3455554433 456788999999999997632 0 00 00011112233468999998 788899
Q ss_pred EEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC-----C-EEEEEeCCCeEEEEEC
Q 017421 185 VYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-----R-ELVAGSSDDCIYVYDL 256 (372)
Q Consensus 185 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-----~-~l~s~s~dg~i~iwd~ 256 (372)
|+++....|.||-+.......... . . ..+...|.+|+|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~-~-s-----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHV-P-S-----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccc-c-c-----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999888888887765431111110 0 0 0134478889987643 2 6778888999998887
No 451
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.76 E-value=3.1 Score=23.99 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=27.4
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 017421 237 TDGRELVAGS-SDDCIYVYDLEANKLSLRILAHTSDVNTVCF 277 (372)
Q Consensus 237 p~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 277 (372)
|+++.|+++. .+++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677665544 578999999999988877765 233345544
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.75 E-value=30 Score=35.31 Aligned_cols=172 Identities=12% Similarity=0.043 Sum_probs=95.3
Q ss_pred CCCCceEEEEEC---C----CCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeeecccCCcceEEEEECC
Q 017421 122 QTTSRAYVSQFS---A----DGSLFVAGFQASQIRIYDVERG---------------WKIQKDILAKSLRWTVTDTSLSP 179 (372)
Q Consensus 122 ~~~~~v~~~~~s---~----~~~~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~ 179 (372)
....+|..|+|+ . ..++|++-. ...+.|+...-. ..+..+....-...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 457889999998 2 224555544 456777772211 11111111111233678899999
Q ss_pred -CCCEEEEEeCCCeEEEEECCCCceee--ecceeecccccc-eeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 017421 180 -DQRHLVYASMSPIVHIVDVGSGTMES--LANVTEIHDGLD-FSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYD 255 (372)
Q Consensus 180 -~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd 255 (372)
+.+.||+....|...||++....... .........|-. +.+ .....-..+.|.++.+.|+..+ ...+.++|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~----~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d 230 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDP----EELSNWKRILWVSDSNRLLVCN-RSKLMLID 230 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCC----cccCcceeeEecCCCCEEEEEc-CCceEEEE
Confidence 66789999999999999993222111 111111111111 111 1123456788988877787776 46789999
Q ss_pred CCCCeEEE-E-eecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 256 LEANKLSL-R-ILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 256 ~~~~~~~~-~-~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+++..... . .......|..+.-+|.+..+++.-. ...|.+.++.
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~ 276 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVK 276 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEcc
Confidence 99876532 1 1224457778877733333333322 2445555554
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.71 E-value=16 Score=32.12 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=53.5
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------CeEEEEeeec-cc--CCcceEEEEECCCCC---------
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVER------GWKIQKDILA-KS--LRWTVTDTSLSPDQR--------- 182 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~-~~--~~~~v~~~~~~~~~~--------- 182 (372)
+..-..-+.|+++|.+.+.++....+...+||... ...+...+.. .+ ....++.+.|+....
T Consensus 19 Dp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 19 DPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred CccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 33445678999999999888888889999999871 2222221111 11 234578888875433
Q ss_pred ---EEEEEeCCCeEEEEECCC
Q 017421 183 ---HLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 183 ---~l~~~~~dg~i~vwd~~~ 200 (372)
.++.+++||+|.-|....
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v 119 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPAL 119 (336)
T ss_pred cceeEEEEeCCceEEeecCcC
Confidence 367788999999998543
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.35 E-value=15 Score=34.75 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEE---------CCCCeEEEE---e-------ec-CCCCeEEEEEeCCC--CCEEE
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYD---------LEANKLSLR---I-------LA-HTSDVNTVCFGDES--GHLIY 286 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd---------~~~~~~~~~---~-------~~-~~~~v~~~~~sp~~--~~~l~ 286 (372)
.|..+..++.|..++-.+.+|.+.++= ++.|+.... + .. ..-.+..++|+|.. ...|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 677888899999888888888765543 122322111 1 11 11245568999444 46777
Q ss_pred EEeCCCeEEEEeccc
Q 017421 287 SGSDDNLCKVNSVLL 301 (372)
Q Consensus 287 s~~~dg~i~vwd~~~ 301 (372)
.-+.|+.||+||+..
T Consensus 185 iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSE 199 (741)
T ss_pred EEecCcEEEEEecCC
Confidence 788999999999863
No 455
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.32 E-value=23 Score=33.42 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=59.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCC------CEEEE
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG------RELVA 244 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~------~~l~s 244 (372)
..+.|+|.||+++|++--..|.|++++..++.......+..... . ........|+++|+- .+|..
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~----~-----~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN----D-----AQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec----c-----CCCCceeeEEECCCccccCCCcEEEE
Confidence 47899999999877765446999999876554322221111100 0 013478899999873 24433
Q ss_pred Ee----------CCCeEEEEECCCC-------eEEE-Eee---cCCCCeEEEEEeCCCCCEEEEEeCC
Q 017421 245 GS----------SDDCIYVYDLEAN-------KLSL-RIL---AHTSDVNTVCFGDESGHLIYSGSDD 291 (372)
Q Consensus 245 ~s----------~dg~i~iwd~~~~-------~~~~-~~~---~~~~~v~~~~~sp~~~~~l~s~~~d 291 (372)
.. ....|.-|.+... +.+. .+. .|. -..|+|. |||.++++.+..
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~Fg-PDG~LYVs~GD~ 166 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFG-PDGKIYYTIGEQ 166 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEEC-CCCcEEEEECCC
Confidence 32 1234555554321 1111 111 132 3467898 899877765543
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.77 E-value=3.6 Score=40.00 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=44.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC----CeEEEEeeecc-------------------cCCcceEEEEECC----CCCEEEE
Q 017421 134 ADGSLFVAGFQASQIRIYDVER----GWKIQKDILAK-------------------SLRWTVTDTSLSP----DQRHLVY 186 (372)
Q Consensus 134 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~-------------------~~~~~v~~~~~~~----~~~~l~~ 186 (372)
++...|+++..||.+....... +.......... .....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4677788888999988887764 21111111000 0112455666666 7788999
Q ss_pred EeCCCeEEEEECCCCceeeec
Q 017421 187 ASMSPIVHIVDVGSGTMESLA 207 (372)
Q Consensus 187 ~~~dg~i~vwd~~~~~~~~~~ 207 (372)
.+.|+.+++||+.++.+....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985443
No 457
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.33 E-value=11 Score=28.68 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=67.2
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----EeeecccCCcceEEEE---ECC--CCCEEEEEeCCCeEEEEECCC
Q 017421 130 SQFSADGSLFVAGFQASQIRIYDVERGWKIQ----KDILAKSLRWTVTDTS---LSP--DQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 130 ~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~dg~i~vwd~~~ 200 (372)
-.|......|++++..|+|.|++........ .....-.....|++++ |.| +...|+.|+. ..+..||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEccc
Confidence 3566667789999999999999876432111 0000111222466664 433 3445666654 5688999987
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcC----CCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST----DGRELVAGSSDDCIYVYDLEANKLSLRI 265 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp----~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 265 (372)
..-....... ..|+++.+-. +..++++| .+..|.-||..-.+...+.
T Consensus 83 N~d~Fyke~~-----------------DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 83 NSDLFYKEVP-----------------DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred CchhhhhhCc-----------------cceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 7654333322 2566666522 23444444 4677888887766655444
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.98 E-value=23 Score=31.90 Aligned_cols=148 Identities=11% Similarity=0.161 Sum_probs=86.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCe------EEEEECCCC--cee--eecce--eecccccceeccCCCCccccEEEEEEcCC
Q 017421 171 TVTDTSLSPDQRHLVYASMSPI------VHIVDVGSG--TME--SLANV--TEIHDGLDFSAADDGGYSFGIFSLKFSTD 238 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~------i~vwd~~~~--~~~--~~~~~--~~~~~~~~~~~~~~~~h~~~i~~~~~sp~ 238 (372)
.+..+.+.+++..+++.+.+|. +..+++... ... ..... .....+..+.. .....-+|++.++
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-----~~~D~Egi~~~~~ 95 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-----NGLDPEGIAVPPD 95 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-----CCCChhHeEEecC
Confidence 4788999876666776777777 655555431 100 00000 00001111100 1125567888788
Q ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEee---------------cCCCCeEEEEEeCCCCCEEEEEeC-----CC
Q 017421 239 GRELVAGSSD------DCIYVYDLEANKLSLRIL---------------AHTSDVNTVCFGDESGHLIYSGSD-----DN 292 (372)
Q Consensus 239 ~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~~~~sp~~~~~l~s~~~-----dg 292 (372)
|.++++.-.+ ..|..++.. |+....+. ..+...-+|+++ ++|+.|+++.+ |+
T Consensus 96 g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~-~dG~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 96 GSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVS-PDGRTLFAAMESPLKQDG 173 (326)
T ss_pred CCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEEC-CCCCEEEEEECccccCCC
Confidence 8888877777 788888876 55443331 134467899999 99996665532 22
Q ss_pred --e-------EEEEecc--c-c----------cC-----CCCCeeEEEeccCCCeEEEEe
Q 017421 293 --L-------CKVNSVL--L-L----------TR-----SINPCNKYLFNPCNKYLIIYL 325 (372)
Q Consensus 293 --~-------i~vwd~~--~-~----------~~-----~~~~v~~~~~s~~g~~l~~~~ 325 (372)
. ++++... + . .. ....++.+.+-+++++|+.-.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 1 4555443 2 1 01 456788999999999877653
No 459
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.14 E-value=18 Score=29.93 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=52.0
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEE-EEEeCCCeEEEEECCCCceeeecceee
Q 017421 135 DGSLFVAGFQ--ASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHL-VYASMSPIVHIVDVGSGTMESLANVTE 211 (372)
Q Consensus 135 ~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~ 211 (372)
+|.++.+.+. ...|++||+.+++.+....... ..+..--...-+..+ ...-.+|.-..+|.++-++.......
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-
Confidence 3445555443 3479999999887665433321 011111111112222 22335777888888776654333221
Q ss_pred cccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 212 IHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 212 ~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
+.=..++ .|+.-|+.++...++..-|.++.
T Consensus 131 ----------------GeGWgLt--~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 131 ----------------GEGWGLT--SDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred ----------------Ccceeee--cCCcceEeeCCceEEEecCHHHh
Confidence 1223333 34555666665566666665543
No 460
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.55 E-value=21 Score=33.70 Aligned_cols=147 Identities=15% Similarity=0.126 Sum_probs=81.5
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCC-------EEEEEeCCCeEEEEECCCCce-e
Q 017421 134 ADGSLFV-AGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQR-------HLVYASMSPIVHIVDVGSGTM-E 204 (372)
Q Consensus 134 ~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~-~ 204 (372)
.+..+|. .|.....++--|++.|+.+.. ..-+. .+ -+.|.|+.+ .-++|-.+..|.-.|.+.... +
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvvee---W~~~d-dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEE---WDLKD-DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeE---eecCC-cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 3444443 344445666667777755544 22222 23 567777432 123344455565566553321 1
Q ss_pred eecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCE
Q 017421 205 SLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHL 284 (372)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ 284 (372)
......... ......+..-. ...++|+++..|.|++||--.-.....+++-...|..+..+ .+|.+
T Consensus 552 ~v~esKdY~------------tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvt-a~Gk~ 617 (776)
T COG5167 552 KVVESKDYK------------TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVT-ANGKH 617 (776)
T ss_pred eeeeehhcc------------ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEee-cCCcE
Confidence 111111100 00122222222 34589999999999999965444444566677889999999 89988
Q ss_pred EEEEeCCCeEEEEecc
Q 017421 285 IYSGSDDNLCKVNSVL 300 (372)
Q Consensus 285 l~s~~~dg~i~vwd~~ 300 (372)
+++.+ ...|.+-|++
T Consensus 618 ilaTC-k~yllL~d~~ 632 (776)
T COG5167 618 ILATC-KNYLLLTDVP 632 (776)
T ss_pred EEEee-cceEEEEecc
Confidence 77665 4567777875
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.54 E-value=46 Score=34.04 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=72.6
Q ss_pred CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-----EEEEeeeccc-------CCcceEEEEECCCCCEEEEEeCC
Q 017421 124 TSRAYVSQFSA-DGSLFVAGFQASQIRIYDVERGW-----KIQKDILAKS-------LRWTVTDTSLSPDQRHLVYASMS 190 (372)
Q Consensus 124 ~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d 190 (372)
..+...++|+| +.+.||+....|.-.||++.... .+.......+ .......+.|.++.+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 34677899999 56789999999999999992111 1111000001 1123447889888888887765
Q ss_pred CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 017421 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTD--GRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~--~~~l~s~s~dg~i~iwd~~~ 258 (372)
..+.++|+++...... +... .....|..+.-+|. +..|+..+ ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~--l~~~------------~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEY--LVTA------------KTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccch--hccC------------CChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 5688999988765332 1110 12247888888876 33333322 5677777766
No 462
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=85.04 E-value=18 Score=31.97 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=43.9
Q ss_pred EEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCcccc
Q 017421 150 IYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFG 229 (372)
Q Consensus 150 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 229 (372)
++|+.+++.+..-.. -..+..|. ++++.++-+..|.+..+|.++|+...+..... .
T Consensus 189 vidv~s~evl~~GLs------mPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG-----------------~ 244 (335)
T TIGR03032 189 VIDIPSGEVVASGLS------MPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG-----------------F 244 (335)
T ss_pred EEEeCCCCEEEcCcc------CCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC-----------------C
Confidence 466666644433111 12334555 67888888889999999998888766655433 4
Q ss_pred EEEEEEcCCCCEEEEE
Q 017421 230 IFSLKFSTDGRELVAG 245 (372)
Q Consensus 230 i~~~~~sp~~~~l~s~ 245 (372)
...++|. |+++++|
T Consensus 245 ~rGL~f~--G~llvVg 258 (335)
T TIGR03032 245 TRGLAFA--GDFAFVG 258 (335)
T ss_pred Cccccee--CCEEEEE
Confidence 5566666 6666554
No 463
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.83 E-value=24 Score=30.99 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=57.6
Q ss_pred CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeEEEE
Q 017421 191 PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------SDDCIYVYDLEANKLSLR 264 (372)
Q Consensus 191 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------~dg~i~iwd~~~~~~~~~ 264 (372)
..|++||..+.+-..... +-.+.|+.+.|..+.++++.|. ....+-.||..+..- ..
T Consensus 16 ~~lC~yd~~~~qW~~~g~----------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~ 78 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN----------------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SS 78 (281)
T ss_pred CEEEEEECCCCEeecCCC----------------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-ee
Confidence 468999988776433322 2335899999987667777664 345688999887653 22
Q ss_pred eec-----CCCCeEEEEEeCCCCCEEE-EEe-C--CCeEEEEecc
Q 017421 265 ILA-----HTSDVNTVCFGDESGHLIY-SGS-D--DNLCKVNSVL 300 (372)
Q Consensus 265 ~~~-----~~~~v~~~~~sp~~~~~l~-s~~-~--dg~i~vwd~~ 300 (372)
+.+ -.++|..+.+...++..+. .|. . +..|..||=.
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 222 2468888887534554443 443 2 3457777754
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.67 E-value=0.091 Score=48.22 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=90.4
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEE-EEeCCCe
Q 017421 172 VTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELV-AGSSDDC 250 (372)
Q Consensus 172 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~-s~s~dg~ 250 (372)
.....|.|.+.-++.++.+..+..||-......... .......++|.-++..++ .+...+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n------------------~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN------------------PTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccC------------------CchhHhhhhhccccchhhhhhhcCCC
Confidence 445678887777888888888888986544321111 122456678887776554 4556788
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc------CCCCCeeEEEeccCCCeEEEE
Q 017421 251 IYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
+.+||+.+......-.+....-.-+.|+ +.+..++.+...|.+.|++..+.+ .|...+++++|.+.+..+...
T Consensus 99 iylwd~n~eytqqLE~gg~~s~sll~ws-Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGTSSKSLLAWS-KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred eeechhhhhhHHHHhccCcchHHHHhhc-cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 9999998653211111111122227898 888889999899999999987432 388899999999988776654
No 465
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.06 E-value=1.3 Score=40.69 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=84.5
Q ss_pred CcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEE-EEEEcCCCCEEEEEeC
Q 017421 169 RWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIF-SLKFSTDGRELVAGSS 247 (372)
Q Consensus 169 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~-~~~~sp~~~~l~s~s~ 247 (372)
...+..+-..|||+.+..-+. .++.++++.+...... +..+...+ + ....|+ .+..-..|.-+.+++.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg-------~--~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPG-------D--SRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCC-------c--hHHHHHHHHHHHhCceeEEEEcC
Confidence 346778889999999887765 6788998876543222 11111111 0 001121 1112234556778888
Q ss_pred CCeEEEE-ECCCC-e----EEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecccc-----cCCCCCeeEEEecc
Q 017421 248 DDCIYVY-DLEAN-K----LSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLL-----TRSINPCNKYLFNP 316 (372)
Q Consensus 248 dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~v~~~~~s~ 316 (372)
||.|.-| |++.+ . .++.++-....+..+.-. .+.+-+++-+..|++.++..... ......+.-+++||
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp 367 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSP 367 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCc
Confidence 8888766 55433 2 111222122233333322 34456777778888877764321 12233567789999
Q ss_pred CCCeEEEEeeeeEEEe
Q 017421 317 CNKYLIIYLILVISIY 332 (372)
Q Consensus 317 ~g~~l~~~~~~~~~~~ 332 (372)
.+.++++-..+.++.+
T Consensus 368 ~~~~Ll~e~~gki~~~ 383 (733)
T COG4590 368 NQAYLLSEDQGKIRLA 383 (733)
T ss_pred ccchheeecCCceEEE
Confidence 9999988755555543
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.03 E-value=48 Score=33.00 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=83.6
Q ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEE-CCCCce
Q 017421 125 SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVD-VGSGTM 203 (372)
Q Consensus 125 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~~ 203 (372)
+.+-.+.|+.+..+ ++...+|+++||++..................|..+.+..+| +++-..+|++.+-+ ......
T Consensus 84 ~~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~ 160 (829)
T KOG2280|consen 84 GELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKL 160 (829)
T ss_pred CCeeeecccCCceE-EEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchh
Confidence 37888999988775 455788999999986432211101111122245555555555 34444455554433 222221
Q ss_pred eeecceeecccccceeccCCCCccccEEEEEEcCCC-C--EEEEEe-CCCeEEEEECCCCe-EEEEeecCCCCeEEEEEe
Q 017421 204 ESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDG-R--ELVAGS-SDDCIYVYDLEANK-LSLRILAHTSDVNTVCFG 278 (372)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~-~--~l~s~s-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s 278 (372)
....... +...+-+|-...+++ + .++-.. ..+ ..++...... ....+......+..+..|
T Consensus 161 ---~~~~diP-----------~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS 225 (829)
T KOG2280|consen 161 ---RKMPDIP-----------YNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVS 225 (829)
T ss_pred ---hhCCCCC-----------CccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEc
Confidence 1111100 000111121111221 1 111111 011 1122222111 112222223567788999
Q ss_pred CCCCCEEEEEeCCCeEEEEeccccc-------CCCCCeeEEEeccCC
Q 017421 279 DESGHLIYSGSDDNLCKVNSVLLLT-------RSINPCNKYLFNPCN 318 (372)
Q Consensus 279 p~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~v~~~~~s~~g 318 (372)
|+.++|+.=...|.|.+-+...-+ ....+.-.++|.-+.
T Consensus 226 -~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 226 -PNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred -CCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 899999998899999888776211 122334477887654
No 467
>PLN02193 nitrile-specifier protein
Probab=83.41 E-value=43 Score=31.95 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=64.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeeec---ccCCcceEEEEECCCCCEEEEEeCCC-----eEEEEECCCC
Q 017421 135 DGSLFVAGFQA-----SQIRIYDVERGWKIQKDILA---KSLRWTVTDTSLSPDQRHLVYASMSP-----IVHIVDVGSG 201 (372)
Q Consensus 135 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~ 201 (372)
++++++.|+.+ ..+.+||+.+..-. ..... ..... -.++.. -++++++.|+.++ .+..||+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~-~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWK-LLTPVEEGPTPRS-FHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEE-EcCcCCCCCCCcc-ceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 45666777654 35888898876322 11111 01111 112222 2456666776543 4677888776
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeEEEEeec----CCCCeE
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLEANKLSLRILA----HTSDVN 273 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~----~~~~v~ 273 (372)
+-......... +....+| ..+. -+++.++.++.+ ..+.+||+.+.+-...-.. ......
T Consensus 305 ~W~~~~~~~~~-------~~~R~~~----~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~ 371 (470)
T PLN02193 305 KWFHCSTPGDS-------FSIRGGA----GLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF 371 (470)
T ss_pred EEEeCCCCCCC-------CCCCCCc----EEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee
Confidence 54322110000 0000011 1122 246677776654 4589999987754222110 111122
Q ss_pred EEEEeCCCCCEEEEEeC
Q 017421 274 TVCFGDESGHLIYSGSD 290 (372)
Q Consensus 274 ~~~~sp~~~~~l~s~~~ 290 (372)
+++. -++++++.|+.
T Consensus 372 ~~~~--~~~~iyv~GG~ 386 (470)
T PLN02193 372 ASAA--VGKHIVIFGGE 386 (470)
T ss_pred EEEE--ECCEEEEECCc
Confidence 2332 35677777775
No 468
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=24 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.4
Q ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERG 156 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 156 (372)
.......++|+|.-.++|.+...|.|++|-...-
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccce
Confidence 3456677899999999999999999999986543
No 469
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.14 E-value=16 Score=38.41 Aligned_cols=157 Identities=13% Similarity=0.272 Sum_probs=83.0
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEE--------ECCCCCEEEEEeCCCeEEEEECCC
Q 017421 130 SQFSA-DGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTS--------LSPDQRHLVYASMSPIVHIVDVGS 200 (372)
Q Consensus 130 ~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~vwd~~~ 200 (372)
+-+-| =++..++ .|..+.+|+.+++..... ..+....|..+. |-|.=+++++-+.--.|.++-+.-
T Consensus 84 mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~---~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 84 MGIFPEIGRAWIT--IDNNLFLWNYESDNELAE---YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eccchhhcceEEE--eCCeEEEEEcCCCCcccc---ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 33444 3444444 567899999998644443 222222344333 223334444444444566654432
Q ss_pred CceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---e-E-------------
Q 017421 201 GTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYV--YDLEAN---K-L------------- 261 (372)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~i--wd~~~~---~-~------------- 261 (372)
.+......... .+..... ....|+|+....+|+.+++|-. |.|+- |....+ + +
T Consensus 159 ~~~~~~~~~f~--~~~~i~~-----dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 159 DEFTGELSIFN--TSFKISV-----DGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred ccccCcccccc--cceeeec-----CCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 21100000000 0000101 1237889998888988777764 43331 222211 1 1
Q ss_pred ---EEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 262 ---SLRIL-AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 262 ---~~~~~-~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
+..+. .+..+|..+... ...+.+.+-+..|+|.+||+.
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID-~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITID-NSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEec-cccceeeeeccCceEEEEEcc
Confidence 11123 456799999998 778889999999999999986
No 470
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.57 E-value=29 Score=29.37 Aligned_cols=114 Identities=9% Similarity=-0.015 Sum_probs=61.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEE-EeCCCeEEEE
Q 017421 228 FGIFSLKFSTDGRELVAGSSD---------DCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYS-GSDDNLCKVN 297 (372)
Q Consensus 228 ~~i~~~~~sp~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s-~~~dg~i~vw 297 (372)
...+.-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--+.++|+ .+.+.+.. -+.+-.|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd-~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWD-SDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCcccccc-ccCcEEEEEccCceEEeee
Confidence 356666778999985432222 223333221 1111222222333578898 66665554 4566677778
Q ss_pred ecc--ccc--------------C-CCCCeeEEEeccCCCeEEEEeeeeEEEee-ceEEEeecccceEEEEEe
Q 017421 298 SVL--LLT--------------R-SINPCNKYLFNPCNKYLIIYLILVISIYS-PNILLDNYFLLRTFYSFM 351 (372)
Q Consensus 298 d~~--~~~--------------~-~~~~v~~~~~s~~g~~l~~~~~~~~~~~d-~~i~lw~~~~~~~~~~~~ 351 (372)
|.. +.. . .....-.++...+|.+.++. |+ +++...|..+|+.+..+.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~-------~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT-------FNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE-------ecCcEEEEECCCCCcEEEEEE
Confidence 743 111 1 11112334445555554444 55 778888999999888774
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.31 E-value=37 Score=29.79 Aligned_cols=118 Identities=20% Similarity=0.202 Sum_probs=66.2
Q ss_pred CcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEe------CCCeEEEEECCCCceeeecceeeccccccee
Q 017421 146 SQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYAS------MSPIVHIVDVGSGTMESLANVTEIHDGLDFS 219 (372)
Q Consensus 146 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 219 (372)
..|++||..+.+-... ..+-.+.|+++.|..+.++++.|. ....+..||+.+........-..
T Consensus 16 ~~lC~yd~~~~qW~~~---g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s-------- 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP---GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS-------- 84 (281)
T ss_pred CEEEEEECCCCEeecC---CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc--------
Confidence 4599999887633222 334556899999997777777664 24568889988765422221000
Q ss_pred ccCCCCccccEEEEEEcC-CC-CEEEEEe-CC--CeEEEEECCCCeEEEE-eecCCCCeEEEEEe
Q 017421 220 AADDGGYSFGIFSLKFST-DG-RELVAGS-SD--DCIYVYDLEANKLSLR-ILAHTSDVNTVCFG 278 (372)
Q Consensus 220 ~~~~~~h~~~i~~~~~sp-~~-~~l~s~s-~d--g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s 278 (372)
..-.++|..+.+.. |+ +..+.|. .+ ..|..||=.+...+.. .......|..+.+-
T Consensus 85 ----~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 85 ----NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred ----ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 01123677777633 33 3444443 22 3477787666554443 22234455555554
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.02 E-value=41 Score=30.10 Aligned_cols=109 Identities=10% Similarity=0.010 Sum_probs=52.5
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeE---EEEeeecccCCcceEEEEECCCCCEEEEEeC-----CCeEEEEECCCC
Q 017421 135 DGSLFVAGFQA-----SQIRIYDVERGWK---IQKDILAKSLRWTVTDTSLSPDQRHLVYASM-----SPIVHIVDVGSG 201 (372)
Q Consensus 135 ~~~~l~~~~~d-----g~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~ 201 (372)
++.+++.|+.+ ..+..||+.+..- ..................+ +++..+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 46666777654 2566777766532 1111111111111112222 4666666664 245788888876
Q ss_pred ceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCe
Q 017421 202 TMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----CIYVYDLEANK 260 (372)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----~i~iwd~~~~~ 260 (372)
+-.......... .....+...++++.+.|+.++ .+.+||.++.+
T Consensus 150 ~W~~~~~~p~~~---------------r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 150 EWFELPDFPGEP---------------RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CeeECCCCCCCC---------------CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 543322111100 111111223466777776553 35688988765
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=80.93 E-value=31 Score=28.70 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=39.3
Q ss_pred CEEEEEeCCCeEEEEECCC--CeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---C---eEEEE
Q 017421 240 RELVAGSSDDCIYVYDLEA--NKLSLRILAHTSDVNTVCFGDESGHLIYSGSDD---N---LCKVN 297 (372)
Q Consensus 240 ~~l~s~s~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~d---g---~i~vw 297 (372)
..|..+...+.|.+|++.. .+.+.++.. -+.|..+.++ ..|++|+|--.+ . .+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~-~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYS-EAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEec-cccceEEEEEeecCCccceEEEEE
Confidence 3444445668899999983 345555553 3789999999 899999997533 2 56665
No 474
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.90 E-value=69 Score=32.66 Aligned_cols=163 Identities=10% Similarity=0.018 Sum_probs=86.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecc---------cCCcceEEEEECC--CCCEEEEEeC----------CCeEE
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAK---------SLRWTVTDTSLSP--DQRHLVYASM----------SPIVH 194 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~ 194 (372)
+..++.++.|+.|.-.|.++++.+...-... ........+.-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4578888899999999999987665421100 0000001112222 2345666642 68899
Q ss_pred EEECCCCceeeecceeeccc------ccceeccCCCCccccEEEEEEcCCCCEEEEEe------------------CCCe
Q 017421 195 IVDVGSGTMESLANVTEIHD------GLDFSAADDGGYSFGIFSLKFSTDGRELVAGS------------------SDDC 250 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s------------------~dg~ 250 (372)
-+|.++|+..-......... +..+.. +..+.=..++++|...+++.+. ..+.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~----gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTR----NTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEecc----CCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccce
Confidence 99999999755443211110 000100 0000002234444443333221 1345
Q ss_pred EEEEECCCCeEEEEeecCCCCe---------EEEEEeCCCCC---EEEEEeCCCeEEEEecccc
Q 017421 251 IYVYDLEANKLSLRILAHTSDV---------NTVCFGDESGH---LIYSGSDDNLCKVNSVLLL 302 (372)
Q Consensus 251 i~iwd~~~~~~~~~~~~~~~~v---------~~~~~sp~~~~---~l~s~~~dg~i~vwd~~~~ 302 (372)
|.-.|.++|+....++.....+ .=+.+...+|+ .++.++.+|.+.+.|.++.
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 7778888998776665311111 11223212553 7888899999999998743
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.77 E-value=6.5 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.2
Q ss_pred CCCceEEEEECCCCCEEEEEeC-C--CcEEEE
Q 017421 123 TTSRAYVSQFSADGSLFVAGFQ-A--SQIRIY 151 (372)
Q Consensus 123 ~~~~v~~~~~s~~~~~l~~~~~-d--g~i~vw 151 (372)
....-....|+|||+.|+..+. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778899999998876543 4 555554
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.58 E-value=30 Score=32.38 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEAN 259 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~ 259 (372)
.|..+...+..+.+++.+.+|.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 4999999998899999999999999999753
No 477
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=79.52 E-value=19 Score=25.33 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=25.5
Q ss_pred CCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEE
Q 017421 144 QASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYA 187 (372)
Q Consensus 144 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 187 (372)
.+|.+.-||..+++...-...+. -...+++++|+..++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~----fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLY----FPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEES----SEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCC----ccCeEEEcCCCCEEEEE
Confidence 45789999999885322211122 47889999999977765
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.41 E-value=7 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=20.1
Q ss_pred CCCCEEEEEe-CCCeEEEEECCCCceeee
Q 017421 179 PDQRHLVYAS-MSPIVHIVDVGSGTMESL 206 (372)
Q Consensus 179 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~ 206 (372)
|++++|+++. .++.|.++|..++.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 5677776655 478999999987765443
No 479
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=43 Score=29.40 Aligned_cols=207 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCCccccCCC-CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe
Q 017421 114 VNGPWPVDQTT-SRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI 192 (372)
Q Consensus 114 ~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 192 (372)
......+-+|- ..|..+....+-.++..|-.--.+-+|+.................- +..+.++ +++...+..+.-
T Consensus 31 ~~v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l-~~Dv~vs--e~yvyvad~ssG 107 (370)
T COG5276 31 VHVGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVINARDL-FADVRVS--EEYVYVADWSSG 107 (370)
T ss_pred cccceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEehhhh-hheeEec--ccEEEEEcCCCc
Q ss_pred EEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---EEEEeecCC
Q 017421 193 VHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK---LSLRILAHT 269 (372)
Q Consensus 193 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~ 269 (372)
+++.|+.+............ .=..-.|.-.|++...+..|-.+.+.|+.+.+ ...+.....
T Consensus 108 L~IvDIS~P~sP~~~~~lnt----------------~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 108 LRIVDISTPDSPTLIGFLNT----------------DGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred eEEEeccCCCCcceeccccC----------------CceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc--------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeec
Q 017421 270 SDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNY 341 (372)
Q Consensus 270 ~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~ 341 (372)
..-..++.| |++-..+..|+-+.+-|+.... .....+.++..+++-.+++.. +--+.+-|+
T Consensus 172 ~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--------~egvlivd~ 240 (370)
T COG5276 172 GDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--------DEGVLIVDV 240 (370)
T ss_pred CCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--------ccceEEEec
Q ss_pred ccceEEEEE
Q 017421 342 FLLRTFYSF 350 (372)
Q Consensus 342 ~~~~~~~~~ 350 (372)
.+.+....|
T Consensus 241 s~~ssp~~~ 249 (370)
T COG5276 241 SGPSSPTVF 249 (370)
T ss_pred CCCCCceEe
No 480
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.10 E-value=45 Score=29.46 Aligned_cols=121 Identities=9% Similarity=0.049 Sum_probs=69.7
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEECCCCc----eee-ecceeecccccceeccCCCCccccEEEEEEcCCCC-----
Q 017421 171 TVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT----MES-LANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGR----- 240 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~----- 240 (372)
..+.++++|.+.+.++....+...+||..... ... ...+... .........+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~---------~~~~~~~~PTGiVfN~~~~F~vt~ 94 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP---------PPLAAEGTPTGQVFNGSDTFVVSG 94 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC---------CCCCCCCCccEEEEeCCCceEEcC
Confidence 46789999999888888888999999986211 101 1111100 0000122455666654322
Q ss_pred -------EEEEEeCCCeEEEEECCCCeE-----EEEee-cCCCCeE-EEEEeC-CCCCEEEEEe-CCCeEEEEecc
Q 017421 241 -------ELVAGSSDDCIYVYDLEANKL-----SLRIL-AHTSDVN-TVCFGD-ESGHLIYSGS-DDNLCKVNSVL 300 (372)
Q Consensus 241 -------~l~s~s~dg~i~iwd~~~~~~-----~~~~~-~~~~~v~-~~~~sp-~~~~~l~s~~-~dg~i~vwd~~ 300 (372)
.++.+++||+|.-|...-+.. ...+. .....|+ .+++.. ..+.+|+.+. ..++|.|||-.
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 367788999999998543221 12222 1224444 355541 2356776665 57899999854
No 481
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.07 E-value=42 Score=29.14 Aligned_cols=187 Identities=11% Similarity=0.030 Sum_probs=102.0
Q ss_pred ceeEeeeeeCCCCCccc--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCC
Q 017421 104 CCHMLSRYLPVNGPWPV--DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQ 181 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (372)
....+..+.|....... .+.......+..-|||..-++-+.. -|.-.|-++.....-.+....-........|.+.|
T Consensus 81 g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G 159 (353)
T COG4257 81 GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG 159 (353)
T ss_pred ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCc
Confidence 33344444444332222 2334555667778888766654332 34445555543333322233334567788999999
Q ss_pred CEEEEEeC---------CCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEE
Q 017421 182 RHLVYASM---------SPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIY 252 (372)
Q Consensus 182 ~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~ 252 (372)
++.+++.. .+.|++|+.-.| ...+.|+-.|+|..-++.-.+..|-
T Consensus 160 ~lWFt~q~G~yGrLdPa~~~i~vfpaPqG--------------------------~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 160 NLWFTGQIGAYGRLDPARNVISVFPAPQG--------------------------GGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred cEEEeeccccceecCcccCceeeeccCCC--------------------------CCCcceEECCCCcEEEEeccccceE
Confidence 99888753 133444443322 2456778889998877766667777
Q ss_pred EEECCCCeEEEEeecC---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEecc-------cccCCCCCeeEEEeccCCC
Q 017421 253 VYDLEANKLSLRILAH---TSDVNTVCFGDESGHLIYSGSDDNLCKVNSVL-------LLTRSINPCNKYLFNPCNK 319 (372)
Q Consensus 253 iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~-------~~~~~~~~v~~~~~s~~g~ 319 (372)
..|..++.. ..+... ...-.. .|+.+-|+.-++....+.+..+|.. .+.+......++.....++
T Consensus 214 ridp~~~~a-ev~p~P~~~~~gsRr-iwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 214 RIDPFAGHA-EVVPQPNALKAGSRR-IWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred EcccccCCc-ceecCCCcccccccc-cccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 777666532 122211 111222 3444777777777677777777754 2333444444554444444
No 482
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=78.53 E-value=8.7 Score=39.13 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=53.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIYDVERGW--KIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGT 202 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 202 (372)
...|......+..+++|...|.+.+++..... .........++.-++..+.|.|+.+.++.+-..|...+|....+.
T Consensus 150 DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~ 228 (1023)
T KOG2006|consen 150 DAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNI 228 (1023)
T ss_pred cceeeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEecccccc
Confidence 34455566677889999999999999876432 222222222333367788999999999998888889999865543
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.41 E-value=17 Score=29.15 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=18.7
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEA 258 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~ 258 (372)
...+++||.||++ ++++ +..|.|.+..+
T Consensus 6 ~~~~l~WS~Dg~l-aV~t-~~~v~IL~~~~ 33 (173)
T PF12657_consen 6 CPNALAWSEDGQL-AVAT-GESVHILDPQT 33 (173)
T ss_pred CCcCeeECCCCCE-EEEc-CCeEEEEeccC
Confidence 4578999999964 4444 45677775444
No 484
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.16 E-value=84 Score=32.06 Aligned_cols=127 Identities=14% Similarity=0.105 Sum_probs=67.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCc-----ceEEEEECC----------------CCCEEEEEeCCCeEE
Q 017421 136 GSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRW-----TVTDTSLSP----------------DQRHLVYASMSPIVH 194 (372)
Q Consensus 136 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~----------------~~~~l~~~~~dg~i~ 194 (372)
+..+..++.++.|.-.|..+++.+.+......... ....+.+.. .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45666677778888888888876655432211110 011222211 344788888999999
Q ss_pred EEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcC--CCCEEEEEeC----------CCeEEEEECCCCeEE
Q 017421 195 IVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFST--DGRELVAGSS----------DDCIYVYDLEANKLS 262 (372)
Q Consensus 195 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp--~~~~l~s~s~----------dg~i~iwd~~~~~~~ 262 (372)
-.|.++|+........... ....... .....-..+.-.| .+..+++|+. +|.|+-+|.++|+.+
T Consensus 274 ALDA~TGk~~W~fg~~G~v---dl~~~~g-~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTV---DLTAGMG-TTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCce---eeecccC-cCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 9999999875332210000 0000000 0000000111112 1335555542 588999999999988
Q ss_pred EEee
Q 017421 263 LRIL 266 (372)
Q Consensus 263 ~~~~ 266 (372)
..+.
T Consensus 350 W~~~ 353 (764)
T TIGR03074 350 WAWD 353 (764)
T ss_pred eEEe
Confidence 7764
No 485
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.89 E-value=5.3 Score=39.22 Aligned_cols=67 Identities=13% Similarity=0.227 Sum_probs=45.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEec
Q 017421 229 GIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSV 299 (372)
Q Consensus 229 ~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~ 299 (372)
.++.+.-+|.|+.++.++.||+|++|+........ +.....+...+.|. ..| |++...|..+.-|.-
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-i~~~~~p~~nlv~t-nhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-ICEEAKPKENLVFT-NHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhh-hhhhcCCccceeee-ccc--eEEEeccchhheeec
Confidence 57778888999999999999999999986554322 22233455566676 444 555556666666654
No 486
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=77.87 E-value=75 Score=31.31 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=98.7
Q ss_pred ceEEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe---EEEEE
Q 017421 126 RAYVSQFSADGSLFVAG-----FQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI---VHIVD 197 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~vwd 197 (372)
.+-.++.|||.+++|-+ ...-++++.|+.++......+ .....+++|.+|++.+.....|.. =++|-
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i-----~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI-----TNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh-----cccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45667899999998854 233478999999885554322 223567899999988877655432 22333
Q ss_pred CCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeEE--EEeecCCCCe
Q 017421 198 VGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD---DCIYVYDLEANKLS--LRILAHTSDV 272 (372)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d---g~i~iwd~~~~~~~--~~~~~~~~~v 272 (372)
-.-+.....-. +.|...+ ..-...+.-+.+.++|+....+ +.+++.+.+..... .......+--
T Consensus 205 h~~gt~~~~d~-------lvyeE~d----~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e 273 (682)
T COG1770 205 HRLGTPGSSDE-------LVYEEKD----DRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE 273 (682)
T ss_pred EecCCCCCcce-------EEEEcCC----CcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE
Confidence 22222110111 0111110 0122334444556677655433 45888887765422 2222111212
Q ss_pred EEEEEeCCCCCEEEEEeCCC-eEEEEeccc---------ccCCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecc
Q 017421 273 NTVCFGDESGHLIYSGSDDN-LCKVNSVLL---------LTRSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYF 342 (372)
Q Consensus 273 ~~~~~sp~~~~~l~s~~~dg-~i~vwd~~~---------~~~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~ 342 (372)
+.+.- ....+++....+| ..+|+.... .-.|...+.--.|+--..+|+..-... --..|++++..
T Consensus 274 Y~~eh--~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~---glp~v~v~~~~ 348 (682)
T COG1770 274 YSVEH--GGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQE---GLPRVVVRDRK 348 (682)
T ss_pred Eeeee--cCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEeccc---CCceEEEEecC
Confidence 22222 1223444444455 455555443 113333444444444444544431000 01567788887
Q ss_pred cceEEE
Q 017421 343 LLRTFY 348 (372)
Q Consensus 343 ~~~~~~ 348 (372)
++.+..
T Consensus 349 ~~~~~~ 354 (682)
T COG1770 349 TGEERG 354 (682)
T ss_pred CCceee
Confidence 776554
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=77.17 E-value=16 Score=33.85 Aligned_cols=165 Identities=14% Similarity=0.057 Sum_probs=89.3
Q ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-Eeeec-cc-CCcceE-EEEECCCCCEEEEEeCCCeEEEE
Q 017421 121 DQTTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQ-KDILA-KS-LRWTVT-DTSLSPDQRHLVYASMSPIVHIV 196 (372)
Q Consensus 121 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~-~~-~~~~v~-~~~~~~~~~~l~~~~~dg~i~vw 196 (372)
..-...|..+-..|||+.+..-+. .++.|+++.+..... +.... .+ ....|+ .+..-..|.-+++++.||.|.-|
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 344566777889999998876655 678999987642211 11111 01 111232 22223356668888889988777
Q ss_pred -ECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 017421 197 -DVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHTSDVNTV 275 (372)
Q Consensus 197 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 275 (372)
|.+.+.. ...+... ...+.+ .++.-+.-..+.+-+++-+.+|++.++.....+.+..-.. -..+.-+
T Consensus 296 Fdvr~~~~-p~l~h~R---~f~l~p-------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~~~ 363 (733)
T COG4590 296 FDVRRDGQ-PHLNHIR---NFKLAP-------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQLV 363 (733)
T ss_pred eeeecCCC-Ccceeee---ccccCc-------ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCccee
Confidence 4433321 1111110 000100 1222222122335567777788887776544433222121 2255678
Q ss_pred EEeCCCCCEEEEEeCCCeEEEEecc
Q 017421 276 CFGDESGHLIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 276 ~~sp~~~~~l~s~~~dg~i~vwd~~ 300 (372)
++| |++.++++- ..|.++++.+.
T Consensus 364 ~~S-p~~~~Ll~e-~~gki~~~~l~ 386 (733)
T COG4590 364 AMS-PNQAYLLSE-DQGKIRLAQLE 386 (733)
T ss_pred eeC-cccchheee-cCCceEEEEec
Confidence 899 888888765 56789998876
No 488
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.74 E-value=47 Score=28.41 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=66.1
Q ss_pred EECCCCCEEEEEeC-C--CcEEEEeCCC---C-eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCe-EEEEECCCCc
Q 017421 131 QFSADGSLFVAGFQ-A--SQIRIYDVER---G-WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPI-VHIVDVGSGT 202 (372)
Q Consensus 131 ~~s~~~~~l~~~~~-d--g~i~vwd~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~ 202 (372)
.+-+||++|.+|+. + ..+++++... . .-..........++ --+...-|||+.|+.|+.... ..+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RW-YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRW-YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCc-cccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 57889999998865 2 3578888654 1 11111001222233 233445679999999887643 3344332111
Q ss_pred --eeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeecCC
Q 017421 203 --MESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRILAHT 269 (372)
Q Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 269 (372)
......+...... ....----+...|+|++|+.+..+. .|||..+++.+..+..-.
T Consensus 152 ~~~~~~~~l~~~~~~---------~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDT---------LPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred CCceeeecchhhhcc---------CccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCCCCC
Confidence 1111000000000 0001122355579999999887654 467998887767766433
No 489
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.47 E-value=9.1 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=17.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCcEEEE
Q 017421 126 RAYVSQFSADGSLFVAGFQASQIRIY 151 (372)
Q Consensus 126 ~v~~~~~s~~~~~l~~~~~dg~i~vw 151 (372)
...+++++++|+.+++-+....|++|
T Consensus 3 ~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 3 YPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 35677788888777776666666654
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.92 E-value=13 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=15.3
Q ss_pred CCCCeEEEEEeCCCCCEEEEEe-CC--CeEEEE
Q 017421 268 HTSDVNTVCFGDESGHLIYSGS-DD--NLCKVN 297 (372)
Q Consensus 268 ~~~~v~~~~~sp~~~~~l~s~~-~d--g~i~vw 297 (372)
....-....|+ |||+.|+-++ .+ |...||
T Consensus 7 ~~~~~~~p~~S-pDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWS-PDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE--TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEe-cCCCEEEEEecCCCCCCcCEE
Confidence 34455667777 7776655443 33 444444
No 491
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=74.89 E-value=26 Score=24.60 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=30.7
Q ss_pred eCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 017421 188 SMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGS-SDDCIYVY 254 (372)
Q Consensus 188 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s-~dg~i~iw 254 (372)
..+|.+..||..+++...+..-. .-.+.++++||+.+++.+- ....|.-|
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-----------------~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-----------------YFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-----------------SSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-----------------CccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 34688999999998764444321 2578899999999776653 33444433
No 492
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.12 E-value=1.3e+02 Score=32.32 Aligned_cols=17 Identities=35% Similarity=0.360 Sum_probs=12.1
Q ss_pred EEEEEcCCCCEEEEEeC
Q 017421 231 FSLKFSTDGRELVAGSS 247 (372)
Q Consensus 231 ~~~~~sp~~~~l~s~s~ 247 (372)
.+|+++++|.+.++-++
T Consensus 596 r~Iavg~~G~lyvaEsD 612 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESD 612 (1899)
T ss_pred hceeecCCceEEEEecc
Confidence 67888888876665443
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.88 E-value=10 Score=20.37 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEE
Q 017421 241 ELVAGSSDDCIYVYDLEANKLSLR 264 (372)
Q Consensus 241 ~l~s~s~dg~i~iwd~~~~~~~~~ 264 (372)
.++.++.+|.+..+|.++|+.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999999887654
No 494
>PLN02193 nitrile-specifier protein
Probab=70.94 E-value=99 Score=29.49 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=52.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCC-----
Q 017421 180 DQRHLVYASMS-----PIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDD----- 249 (372)
Q Consensus 180 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg----- 249 (372)
++++++.|+.+ ..+.+||+.+.+-..+..... .+....+| +++. -++++++.|+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~-------~P~~R~~h-----~~~~-~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE-------GPTPRSFH-----SMAA-DEENVYVFGGVSATARLK 294 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC-------CCCCccce-----EEEE-ECCEEEEECCCCCCCCcc
Confidence 45666666654 358888988765433222100 01111112 1211 2456666666543
Q ss_pred eEEEEECCCCeEEEEee--c--CCCCeEEEEEeCCCCCEEEEEeCC----CeEEEEeccc
Q 017421 250 CIYVYDLEANKLSLRIL--A--HTSDVNTVCFGDESGHLIYSGSDD----NLCKVNSVLL 301 (372)
Q Consensus 250 ~i~iwd~~~~~~~~~~~--~--~~~~v~~~~~sp~~~~~l~s~~~d----g~i~vwd~~~ 301 (372)
.+..||+.+.+-...-. . ....-..++. -++++++.++.+ ..+.+||+.+
T Consensus 295 ~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 295 TLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred eEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCC
Confidence 47788887765321110 0 0011112333 356777777655 4588888763
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=70.31 E-value=6.9 Score=38.49 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=34.9
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceec
Q 017421 170 WTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSA 220 (372)
Q Consensus 170 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 220 (372)
..++++.-+|.++.++.+..||.|.+|+........+.....+..++.|..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tn 65 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTN 65 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeec
Confidence 357788889999999999999999999986554433333333333333433
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.04 E-value=1.5e+02 Score=31.50 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=77.9
Q ss_pred CEEEEEeC---------CCcEEEEeCCC-----C----eEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEEC
Q 017421 137 SLFVAGFQ---------ASQIRIYDVER-----G----WKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDV 198 (372)
Q Consensus 137 ~~l~~~~~---------dg~i~vwd~~~-----~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 198 (372)
.+|++|.. -|.+.|||+-. + +...+.......+++|..++= -+|. |+++ ..-.|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~-l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGH-LLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccE-EEEc-cCcEEEEEEe
Confidence 46777632 37899998742 2 122233334455556665542 2454 4443 3356899999
Q ss_pred -CCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-EEEEeec--CCCCeEE
Q 017421 199 -GSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANK-LSLRILA--HTSDVNT 274 (372)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~--~~~~v~~ 274 (372)
+.+.......... ++......--.++|+.|.--..|.+.-.+..- .+..+.. ..-.+++
T Consensus 1124 ~r~~~ligVaFiD~-----------------~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s 1186 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDL-----------------PLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYS 1186 (1366)
T ss_pred ccCCcceeeEEecc-----------------ceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhcee
Confidence 4444332222110 23333333345677777766666666554322 2222221 2236778
Q ss_pred EEEeCCCCC--EEEEEeCCCeEEEEecc
Q 017421 275 VCFGDESGH--LIYSGSDDNLCKVNSVL 300 (372)
Q Consensus 275 ~~~sp~~~~--~l~s~~~dg~i~vwd~~ 300 (372)
+.|- -+|. .++++..|+.|++|-..
T Consensus 1187 ~EFL-Vdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1187 TEFL-VDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eeeE-EcCCeeEEEEEcCCCcEEEEEeC
Confidence 8887 5655 46777889999887653
No 497
>PRK13613 lipoprotein LpqB; Provisional
Probab=69.72 E-value=1.2e+02 Score=29.98 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=71.3
Q ss_pred ceEEEEECCCCCEEEEEeCCC-eEEEEECCCCceeee--cceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeC
Q 017421 171 TVTDTSLSPDQRHLVYASMSP-IVHIVDVGSGTMESL--ANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSS 247 (372)
Q Consensus 171 ~v~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~ 247 (372)
.+.+.+.++++..++....++ .+.+..+..+..... ..... ...++.-.|.++|. +-+...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~---------------~~~Lt~PS~d~~g~-vWtvd~ 427 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA---------------DGRLTSPSWDGRGD-LWVVDR 427 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec---------------cCcccCCcCcCCCC-EEEecC
Confidence 577899999999888776655 455544433321000 00000 01345556666653 333211
Q ss_pred --CC--eEEEEECCCCeEEE-EeecCC-CCeEEEEEeCCCCCEEEEEeC---CCeEEEEe-------------cccccCC
Q 017421 248 --DD--CIYVYDLEANKLSL-RILAHT-SDVNTVCFGDESGHLIYSGSD---DNLCKVNS-------------VLLLTRS 305 (372)
Q Consensus 248 --dg--~i~iwd~~~~~~~~-~~~~~~-~~v~~~~~sp~~~~~l~s~~~---dg~i~vwd-------------~~~~~~~ 305 (372)
++ .+++..- +++... ...... ..|..+..| +||..++.... .+.|.|=- ++.+...
T Consensus 428 ~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvS-rDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~ 505 (599)
T PRK13613 428 DPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVA-RDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE 505 (599)
T ss_pred CCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEEC-CCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC
Confidence 12 2444432 333321 111222 379999999 88887665432 23343322 2222223
Q ss_pred CCCeeEEEeccCCCeEEEE
Q 017421 306 INPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 306 ~~~v~~~~~s~~g~~l~~~ 324 (372)
...+.+++|..++.+++.+
T Consensus 506 l~~v~~~~W~~~~sL~Vlg 524 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLG 524 (599)
T ss_pred CCccceeEEcCCCEEEEEe
Confidence 3358999999998887755
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=69.38 E-value=92 Score=28.49 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccCCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecc
Q 017421 134 ADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSLRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIH 213 (372)
Q Consensus 134 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 213 (372)
.+++ +.++..+|.|.-.|.+++..+....... ....+..-.+..+|+ ++.++.++.++.+|..+|+..-...... .
T Consensus 67 ~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 67 GDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred eCCe-EEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-C
Confidence 3454 4555778888888888886543322221 011122222222565 7778888989999998887654443221 0
Q ss_pred cccceeccCCCCccccEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEee
Q 017421 214 DGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSDDCIYVYDLEANKLSLRIL 266 (372)
Q Consensus 214 ~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 266 (372)
. .+.....-.++ .+..++.++.+...|..+++......
T Consensus 143 --~------------~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 143 --P------------YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred --e------------EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence 0 11111222233 23333366778777877777655543
No 499
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=67.48 E-value=1.4e+02 Score=29.78 Aligned_cols=233 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred cccCCceeEeeeeeCCCCCccccCCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEeeeccc-----
Q 017421 99 FSAADCCHMLSRYLPVNGPWPVDQTTSRAYVSQFSADGSLFVAGFQA------SQIRIYDVERGWKIQKDILAKS----- 167 (372)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~----- 167 (372)
+......+-+.-.-..-....+...+.-|++..++|.. +++|..- ..++++-+...+.........+
T Consensus 35 ~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~--iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 35 FSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTT--IVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred cCCCCceEEEEeccchhhheecCCCcceeEeeccCcCc--eEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Q ss_pred ---------------CCcceEEEEECCCCCEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEE
Q 017421 168 ---------------LRWTVTDTSLSPDQRHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFS 232 (372)
Q Consensus 168 ---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 232 (372)
....|.++.|.++++.+++...+|.|.+||...+...........+..-.. +..-|..
T Consensus 113 ~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~-------ys~fv~~ 185 (670)
T PF10395_consen 113 DGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVS-------YSKFVND 185 (670)
T ss_pred ccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccccccee-------hhhhhcc
Q ss_pred EEEcCCCCEEEEEeC-CCe---EEEEEC-CCCeEEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCeEEEEeccccc-
Q 017421 233 LKFSTDGRELVAGSS-DDC---IYVYDL-EANKLSLRIL---AHTSDVNTVCFGDESGHLIYSGSDDNLCKVNSVLLLT- 303 (372)
Q Consensus 233 ~~~sp~~~~l~s~s~-dg~---i~iwd~-~~~~~~~~~~---~~~~~v~~~~~sp~~~~~l~s~~~dg~i~vwd~~~~~- 303 (372)
........++++.+. .+. .+++.+ .....+..+. .+........|.-.+|.+... .++.|.+|++..++
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~ 263 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQI 263 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceE
Q ss_pred -----------CCCCCeeEEEeccCCCeEEEEeeeeEEEeeceEEEeecccceEEEEE
Q 017421 304 -----------RSINPCNKYLFNPCNKYLIIYLILVISIYSPNILLDNYFLLRTFYSF 350 (372)
Q Consensus 304 -----------~~~~~v~~~~~s~~g~~l~~~~~~~~~~~d~~i~lw~~~~~~~~~~~ 350 (372)
.....+.++.--...+.|.+. ++.|.+.|+.-...+.++
T Consensus 264 ~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~--------~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 264 QKTISLPSIIDKESDDLVSLKPPSPNRVLLSV--------NNKIYLLDLKFESILSEF 313 (670)
T ss_pred EEEEEechhhccccccceEeecCCCCeEEEEc--------CCEEEEEeehhhhhhhhh
No 500
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=67.36 E-value=74 Score=32.08 Aligned_cols=215 Identities=13% Similarity=0.033 Sum_probs=104.0
Q ss_pred eEeeeeeCCCCCccccC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeeecccC---CcceEEEEECCCC
Q 017421 106 HMLSRYLPVNGPWPVDQ-TTSRAYVSQFSADGSLFVAGFQASQIRIYDVERGWKIQKDILAKSL---RWTVTDTSLSPDQ 181 (372)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~ 181 (372)
....+..|.+.++.+.| -...|-..+||.|.+.++....+..|.+++..-. .+......... -+.-..+.|....
T Consensus 93 ~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd-~ise~~L~~~dl~ef~khi~VgWgkke 171 (1243)
T COG5290 93 HLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFD-PISEYHLKKSDLVEFGKHIRVGWGKKE 171 (1243)
T ss_pred EEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccc-ccchhhcchhHHHHhccceEeeecccc
Confidence 33444445555666655 4667888899999998877777788888875432 11111100000 0011234444322
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeecceeecccccceeccCCCCccccEEEEEEcCCCCEEEEEeCC----CeEEEEECC
Q 017421 182 RHLVYASMSPIVHIVDVGSGTMESLANVTEIHDGLDFSAADDGGYSFGIFSLKFSTDGRELVAGSSD----DCIYVYDLE 257 (372)
Q Consensus 182 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~sp~~~~l~s~s~d----g~i~iwd~~ 257 (372)
..+---+ -..++-|....... ..|-.+..+ ..-.-+.|--|..+.+.+... ..+++|.-.
T Consensus 172 tqfrgk~--~raqlrdptmp~~v--------D~G~l~avd------~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre 235 (1243)
T COG5290 172 TQFRGKG--ARAQLRDPTMPYMV--------DYGDLFAVD------TNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE 235 (1243)
T ss_pred hhccccc--hhhhccCCCCcccc--------cccceeEee------CCceEEEEccCcceeeecchhcccccceeeeccc
Confidence 2221000 00111111100000 000000000 011235666666677666543 235565422
Q ss_pred CCeEEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-----eEEEEeccccc--------CCCCCeeEEEeccCCCeEEEE
Q 017421 258 ANKLSLRILAHTSDVNTVCFGDESGHLIYSGSDDN-----LCKVNSVLLLT--------RSINPCNKYLFNPCNKYLIIY 324 (372)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~s~~~dg-----~i~vwd~~~~~--------~~~~~v~~~~~s~~g~~l~~~ 324 (372)
|+.-..-....+.-..+.|- |.|..+++-..|| .|.++...-+. +....+..++|+-....++.+
T Consensus 236 -g~lds~sep~~g~e~~LSWk-pqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~ 313 (1243)
T COG5290 236 -GQLDSASEPVTGMEHQLSWK-PQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA 313 (1243)
T ss_pred -cccccccCCcccchhccccc-cCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh
Confidence 22211111122233458898 9999999987554 36666654222 233456777888777777777
Q ss_pred eeeeEEEeeceEEEe
Q 017421 325 LILVISIYSPNILLD 339 (372)
Q Consensus 325 ~~~~~~~~d~~i~lw 339 (372)
.+..+.+|...-.-|
T Consensus 314 ~~n~~~lwttkNyhW 328 (1243)
T COG5290 314 EGNLLKLWTTKNYHW 328 (1243)
T ss_pred hcceEEEEEccceEE
Confidence 666666665444444
Done!