Query 017422
Match_columns 372
No_of_seqs 215 out of 1790
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 4.4E-55 9.6E-60 422.7 21.6 262 87-371 3-267 (393)
2 KOG1322 GDP-mannose pyrophosph 100.0 8.5E-53 1.8E-57 394.2 23.6 242 84-367 5-247 (371)
3 PLN02241 glucose-1-phosphate a 100.0 1.8E-46 3.8E-51 379.5 29.7 281 87-367 1-284 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 4.3E-43 9.2E-48 354.1 28.9 274 87-365 1-274 (429)
5 PRK05293 glgC glucose-1-phosph 100.0 6.9E-43 1.5E-47 347.1 28.2 258 87-367 1-261 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 1.2E-41 2.7E-46 341.4 28.6 263 86-367 2-279 (407)
7 PF00483 NTP_transferase: Nucl 100.0 1.8E-41 4E-46 316.7 23.9 239 91-365 1-247 (248)
8 PRK00725 glgC glucose-1-phosph 100.0 5.4E-41 1.2E-45 338.4 28.8 265 86-367 12-290 (425)
9 TIGR01105 galF UTP-glucose-1-p 100.0 2.8E-40 6.1E-45 318.0 27.5 248 87-366 1-279 (297)
10 PRK10122 GalU regulator GalF; 100.0 3.9E-39 8.6E-44 310.3 27.4 246 87-364 1-277 (297)
11 cd06428 M1P_guanylylT_A_like_N 100.0 3.6E-39 7.7E-44 304.2 25.2 235 92-363 1-257 (257)
12 COG1208 GCD1 Nucleoside-diphos 100.0 3.3E-39 7.1E-44 318.2 24.6 236 89-366 1-237 (358)
13 cd06425 M1P_guanylylT_B_like_N 100.0 1.1E-38 2.4E-43 296.3 26.1 232 90-364 1-233 (233)
14 COG1209 RfbA dTDP-glucose pyro 100.0 4.5E-39 9.7E-44 296.8 22.7 234 90-365 1-237 (286)
15 TIGR02091 glgC glucose-1-phosp 100.0 2E-38 4.3E-43 313.0 25.7 258 92-367 1-261 (361)
16 TIGR02092 glgD glucose-1-phosp 100.0 1.1E-38 2.4E-43 315.9 22.9 252 89-367 2-256 (369)
17 PRK15480 glucose-1-phosphate t 100.0 6.5E-38 1.4E-42 300.9 26.3 236 87-364 1-241 (292)
18 cd02541 UGPase_prokaryotic Pro 100.0 1.6E-37 3.5E-42 294.2 25.1 244 90-364 1-265 (267)
19 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.7E-37 5.8E-42 288.3 25.6 232 90-364 1-238 (240)
20 TIGR02623 G1P_cyt_trans glucos 100.0 2E-37 4.3E-42 292.3 24.8 241 91-369 1-250 (254)
21 TIGR01099 galU UTP-glucose-1-p 100.0 2.7E-37 5.9E-42 291.4 24.1 240 90-359 1-260 (260)
22 TIGR01207 rmlA glucose-1-phosp 100.0 8.1E-37 1.7E-41 292.7 24.9 231 91-364 1-237 (286)
23 cd04189 G1P_TT_long G1P_TT_lon 100.0 2.1E-36 4.5E-41 280.9 26.8 234 90-366 1-236 (236)
24 PRK13389 UTP--glucose-1-phosph 100.0 1.4E-36 3.1E-41 293.1 25.9 244 88-364 7-280 (302)
25 cd02524 G1P_cytidylyltransfera 100.0 2.8E-36 6.1E-41 283.9 26.0 244 92-369 1-251 (253)
26 TIGR01208 rmlA_long glucose-1- 100.0 1.8E-36 4E-41 298.3 25.6 234 91-366 1-237 (353)
27 cd06422 NTP_transferase_like_1 100.0 2.3E-36 5E-41 278.3 22.6 219 91-359 1-221 (221)
28 cd06915 NTP_transferase_WcbM_l 100.0 4E-35 8.7E-40 268.6 23.7 223 92-360 1-223 (223)
29 cd06426 NTP_transferase_like_2 100.0 1.8E-34 3.8E-39 265.0 23.5 220 92-360 1-220 (220)
30 cd04181 NTP_transferase NTP_tr 100.0 2.2E-34 4.8E-39 262.9 23.9 217 92-351 1-217 (217)
31 COG1210 GalU UDP-glucose pyrop 100.0 4.5E-34 9.8E-39 263.8 19.8 250 87-367 2-273 (291)
32 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 4.7E-32 1E-36 251.1 22.6 223 92-356 1-230 (231)
33 cd02523 PC_cytidylyltransferas 100.0 6E-32 1.3E-36 250.2 20.4 223 92-360 1-229 (229)
34 cd02508 ADP_Glucose_PP ADP-glu 100.0 1.2E-31 2.7E-36 243.6 20.7 199 92-350 1-200 (200)
35 PRK14355 glmU bifunctional N-a 100.0 1.5E-30 3.3E-35 264.9 25.7 237 87-365 1-244 (459)
36 PRK14352 glmU bifunctional N-a 100.0 1.7E-29 3.8E-34 258.7 25.3 229 88-356 3-236 (482)
37 cd02509 GDP-M1P_Guanylyltransf 100.0 1.8E-29 3.9E-34 240.7 21.7 234 90-355 1-273 (274)
38 cd04197 eIF-2B_epsilon_N The N 100.0 8.6E-30 1.9E-34 234.5 16.9 205 90-309 1-217 (217)
39 cd02540 GT2_GlmU_N_bac N-termi 100.0 5.3E-28 1.1E-32 223.1 24.3 222 92-356 1-229 (229)
40 PRK14358 glmU bifunctional N-a 100.0 2.5E-28 5.4E-33 250.1 22.8 231 88-362 6-241 (481)
41 KOG1460 GDP-mannose pyrophosph 100.0 9.9E-29 2.1E-33 229.1 15.2 242 88-365 1-265 (407)
42 PRK14356 glmU bifunctional N-a 100.0 2.5E-27 5.3E-32 240.9 25.8 235 89-366 5-246 (456)
43 PRK09451 glmU bifunctional N-a 100.0 1.1E-27 2.4E-32 243.6 21.4 228 87-361 3-243 (456)
44 PRK14359 glmU bifunctional N-a 100.0 4.3E-27 9.4E-32 237.2 25.0 231 88-365 1-235 (430)
45 TIGR01173 glmU UDP-N-acetylglu 100.0 3.9E-27 8.4E-32 238.7 24.7 229 90-364 1-236 (451)
46 PRK14354 glmU bifunctional N-a 100.0 7.8E-27 1.7E-31 237.3 26.5 232 88-363 1-239 (458)
47 PRK14353 glmU bifunctional N-a 100.0 8.2E-27 1.8E-31 236.5 26.0 234 87-363 3-242 (446)
48 COG1207 GlmU N-acetylglucosami 99.9 2.8E-26 6.1E-31 222.8 24.0 237 88-365 1-244 (460)
49 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.6E-26 3.5E-31 235.6 23.1 240 90-360 1-281 (468)
50 PRK05450 3-deoxy-manno-octulos 99.9 1.8E-25 4E-30 208.8 24.7 235 88-363 1-244 (245)
51 PRK14357 glmU bifunctional N-a 99.9 1.6E-25 3.5E-30 227.1 24.1 222 90-363 1-229 (448)
52 cd02517 CMP-KDO-Synthetase CMP 99.9 4E-25 8.7E-30 205.8 23.8 227 89-361 1-238 (239)
53 PRK14360 glmU bifunctional N-a 99.9 4.7E-25 1E-29 223.8 24.5 229 90-364 2-237 (450)
54 COG1213 Predicted sugar nucleo 99.9 9.4E-25 2E-29 198.6 17.8 222 87-364 1-229 (239)
55 cd02507 eIF-2B_gamma_N_like Th 99.9 7.7E-25 1.7E-29 201.6 15.5 204 90-309 1-216 (216)
56 PRK13368 3-deoxy-manno-octulos 99.9 1.2E-23 2.7E-28 195.7 23.5 226 89-362 2-237 (238)
57 PRK15460 cpsB mannose-1-phosph 99.9 7.5E-23 1.6E-27 207.7 20.5 242 88-360 4-290 (478)
58 cd04198 eIF-2B_gamma_N The N-t 99.9 3.6E-23 7.8E-28 190.2 16.3 200 90-308 1-213 (214)
59 COG0836 {ManC} Mannose-1-phosp 99.9 2.9E-21 6.4E-26 182.6 20.6 243 89-361 1-283 (333)
60 PLN02917 CMP-KDO synthetase 99.8 8.9E-19 1.9E-23 168.5 24.1 237 88-367 46-291 (293)
61 KOG1462 Translation initiation 99.8 2.7E-19 5.8E-24 171.8 12.3 256 86-360 6-306 (433)
62 COG4750 LicC CTP:phosphocholin 99.8 1.3E-18 2.8E-23 152.9 13.8 220 90-366 1-228 (231)
63 PRK00155 ispD 2-C-methyl-D-ery 99.8 1E-16 2.2E-21 148.3 21.5 220 87-365 1-224 (227)
64 TIGR00453 ispD 2-C-methyl-D-er 99.8 7.2E-17 1.6E-21 148.1 19.8 211 92-362 2-216 (217)
65 cd02516 CDP-ME_synthetase CDP- 99.7 6.8E-17 1.5E-21 148.1 17.6 214 91-359 2-218 (218)
66 cd02513 CMP-NeuAc_Synthase CMP 99.7 6.9E-16 1.5E-20 141.7 21.6 214 90-362 2-222 (223)
67 PRK09382 ispDF bifunctional 2- 99.7 1.3E-15 2.8E-20 151.3 22.2 209 87-365 3-214 (378)
68 TIGR00466 kdsB 3-deoxy-D-manno 99.7 2.8E-15 6E-20 140.3 23.0 228 92-356 2-237 (238)
69 KOG1461 Translation initiation 99.7 1.3E-15 2.9E-20 154.1 19.7 259 88-366 23-292 (673)
70 PRK13385 2-C-methyl-D-erythrit 99.7 4.3E-15 9.3E-20 138.0 18.9 220 89-365 2-225 (230)
71 TIGR03310 matur_ygfJ molybdenu 99.7 2.6E-15 5.7E-20 134.2 16.3 120 92-236 2-123 (188)
72 TIGR03584 PseF pseudaminic aci 99.6 2.5E-14 5.5E-19 132.4 21.3 214 92-363 2-220 (222)
73 PF12804 NTP_transf_3: MobA-li 99.6 1.2E-15 2.5E-20 133.2 11.5 122 92-241 1-124 (160)
74 PRK00317 mobA molybdopterin-gu 99.6 5.3E-14 1.1E-18 127.0 20.0 118 87-234 1-120 (193)
75 cd02503 MobA MobA catalyzes th 99.6 1.9E-14 4E-19 128.2 16.8 114 90-236 1-116 (181)
76 TIGR00454 conserved hypothetic 99.6 9.2E-15 2E-19 131.5 13.5 125 90-241 1-127 (183)
77 COG2068 Uncharacterized MobA-r 99.6 9.6E-14 2.1E-18 124.4 17.7 191 88-364 4-198 (199)
78 COG2266 GTP:adenosylcobinamide 99.6 1.7E-13 3.8E-18 119.7 16.7 110 90-229 1-112 (177)
79 cd04182 GT_2_like_f GT_2_like_ 99.6 3.7E-14 8E-19 126.0 12.6 121 90-235 1-123 (186)
80 PLN02728 2-C-methyl-D-erythrit 99.5 8E-13 1.7E-17 124.6 21.4 222 87-367 22-248 (252)
81 TIGR03202 pucB xanthine dehydr 99.5 2.9E-13 6.3E-18 121.8 17.4 126 90-235 1-128 (190)
82 TIGR02665 molyb_mobA molybdopt 99.5 3.2E-13 7E-18 120.8 16.8 119 90-236 1-121 (186)
83 PRK02726 molybdopterin-guanine 99.5 4.7E-13 1E-17 121.9 18.0 112 88-229 6-119 (200)
84 COG1212 KdsB CMP-2-keto-3-deox 99.5 2E-12 4.4E-17 117.0 20.3 235 88-365 2-244 (247)
85 PRK14489 putative bifunctional 99.5 2.5E-12 5.4E-17 127.6 18.5 122 87-236 3-126 (366)
86 PRK00560 molybdopterin-guanine 99.5 2.7E-12 5.9E-17 116.6 17.2 103 88-224 7-112 (196)
87 cd02518 GT2_SpsF SpsF is a gly 99.4 1.3E-11 2.8E-16 114.6 20.4 115 92-236 2-121 (233)
88 PF01128 IspD: 2-C-methyl-D-er 99.4 1.4E-10 3.1E-15 107.1 22.1 216 90-364 1-220 (221)
89 PRK14490 putative bifunctional 99.4 4E-11 8.7E-16 119.2 19.4 110 87-227 172-283 (369)
90 COG1211 IspD 4-diphosphocytidy 99.4 1.5E-10 3.2E-15 107.0 21.6 223 87-365 2-228 (230)
91 COG0746 MobA Molybdopterin-gua 99.3 5.1E-11 1.1E-15 107.9 17.0 113 87-232 2-116 (192)
92 COG1083 NeuA CMP-N-acetylneura 99.3 4.5E-11 9.8E-16 107.5 15.2 222 87-367 1-226 (228)
93 PRK14500 putative bifunctional 99.2 1.4E-09 3.1E-14 107.0 18.5 109 89-228 160-270 (346)
94 cd04180 UGPase_euk_like Eukary 99.1 5.5E-11 1.2E-15 113.0 5.8 214 90-314 1-241 (266)
95 cd04193 UDPGlcNAc_PPase UDPGlc 99.0 2.3E-08 5.1E-13 97.5 19.1 213 88-315 14-257 (323)
96 PTZ00339 UDP-N-acetylglucosami 98.9 2.4E-07 5.3E-12 94.5 19.9 210 88-313 105-350 (482)
97 COG1861 SpsF Spore coat polysa 98.5 2.2E-05 4.9E-10 71.5 18.8 117 88-235 2-124 (241)
98 PRK00576 molybdopterin-guanine 98.5 9.6E-06 2.1E-10 72.2 16.1 98 110-232 3-104 (178)
99 cd00897 UGPase_euk Eukaryotic 98.4 4.4E-05 9.5E-10 73.7 20.9 250 88-361 2-295 (300)
100 PF02348 CTP_transf_3: Cytidyl 98.4 4E-06 8.6E-11 76.6 13.3 177 91-307 1-185 (217)
101 PLN02474 UTP--glucose-1-phosph 98.1 0.00026 5.5E-09 72.2 19.1 258 87-362 77-371 (469)
102 PF01704 UDPGP: UTP--glucose-1 98.0 0.00046 1E-08 69.8 18.3 257 86-362 53-354 (420)
103 PLN02435 probable UDP-N-acetyl 97.9 0.00099 2.1E-08 68.4 18.7 208 88-313 115-363 (493)
104 cd06424 UGGPase UGGPase cataly 97.9 0.00082 1.8E-08 65.3 16.6 213 91-315 2-253 (315)
105 COG4284 UDP-glucose pyrophosph 97.7 0.0022 4.7E-08 64.8 17.2 179 86-270 102-305 (472)
106 PLN02830 UDP-sugar pyrophospho 97.2 0.054 1.2E-06 57.4 21.3 217 88-315 127-384 (615)
107 TIGR03552 F420_cofC 2-phospho- 97.2 0.014 3E-07 52.4 14.9 86 121-229 30-117 (195)
108 cd00761 Glyco_tranf_GTA_type G 96.1 0.15 3.3E-06 41.6 12.6 99 114-229 2-103 (156)
109 PRK13412 fkp bifunctional fuco 94.4 0.13 2.9E-06 57.0 8.3 133 207-358 154-306 (974)
110 cd06442 DPM1_like DPM1_like re 92.6 2.6 5.6E-05 37.7 12.4 191 115-343 3-197 (224)
111 PF07959 Fucokinase: L-fucokin 92.0 0.45 9.9E-06 48.2 7.3 140 206-359 54-251 (414)
112 cd04188 DPG_synthase DPG_synth 91.8 1.1 2.4E-05 40.1 9.0 135 187-344 68-203 (211)
113 PF00535 Glycos_transf_2: Glyc 91.8 2.8 6.2E-05 34.8 11.0 111 114-241 3-116 (169)
114 PLN02726 dolichyl-phosphate be 91.2 1.3 2.8E-05 40.9 8.9 134 187-344 79-213 (243)
115 COG1920 Predicted nucleotidylt 91.0 3.3 7.2E-05 37.4 10.7 112 90-237 1-118 (210)
116 cd02525 Succinoglycan_BP_ExoA 88.8 11 0.00024 34.0 13.0 106 115-238 6-116 (249)
117 cd04179 DPM_DPG-synthase_like 88.5 9 0.00019 32.9 11.7 108 115-239 3-115 (185)
118 cd06434 GT2_HAS Hyaluronan syn 87.9 9 0.00019 34.5 11.7 97 114-229 5-103 (235)
119 cd04186 GT_2_like_c Subfamily 85.8 17 0.00037 30.2 11.6 99 114-232 2-103 (166)
120 TIGR03532 DapD_Ac 2,3,4,5-tetr 85.2 0.25 5.4E-06 46.1 -0.2 36 325-367 31-66 (231)
121 cd06423 CESA_like CESA_like is 85.1 20 0.00042 29.5 11.6 101 115-231 3-106 (180)
122 KOG2638 UDP-glucose pyrophosph 82.4 60 0.0013 33.0 17.3 209 88-315 102-335 (498)
123 cd04192 GT_2_like_e Subfamily 81.7 29 0.00063 30.7 12.0 107 114-235 2-114 (229)
124 TIGR03469 HonB hopene-associat 81.3 38 0.00082 33.7 13.7 108 122-236 53-166 (384)
125 PRK10073 putative glycosyl tra 79.9 37 0.0008 33.1 12.8 106 115-238 12-120 (328)
126 COG1216 Predicted glycosyltran 79.4 60 0.0013 31.0 16.9 100 122-237 16-118 (305)
127 TIGR01556 rhamnosyltran L-rham 78.3 59 0.0013 30.4 17.6 96 123-237 9-107 (281)
128 KOG2978 Dolichol-phosphate man 78.3 54 0.0012 29.9 13.7 182 122-343 19-207 (238)
129 cd06427 CESA_like_2 CESA_like_ 77.5 56 0.0012 29.7 13.0 109 115-239 7-120 (241)
130 cd04187 DPM1_like_bac Bacteria 77.5 45 0.00097 28.6 11.5 49 187-239 66-115 (181)
131 PTZ00260 dolichyl-phosphate be 76.9 33 0.00071 33.6 11.4 139 187-349 148-290 (333)
132 cd02510 pp-GalNAc-T pp-GalNAc- 76.7 52 0.0011 31.2 12.6 105 115-234 4-114 (299)
133 PRK14583 hmsR N-glycosyltransf 75.8 48 0.001 33.7 12.7 93 122-231 88-183 (444)
134 cd06439 CESA_like_1 CESA_like_ 74.7 66 0.0014 29.1 14.1 97 115-230 35-136 (251)
135 cd04185 GT_2_like_b Subfamily 74.5 38 0.00083 29.5 10.4 100 115-229 3-105 (202)
136 cd04184 GT2_RfbC_Mx_like Myxoc 74.0 58 0.0013 28.2 12.7 104 115-235 7-116 (202)
137 PRK11204 N-glycosyltransferase 71.9 68 0.0015 32.0 12.6 93 122-231 67-162 (420)
138 KOG2388 UDP-N-acetylglucosamin 71.8 4.1 8.8E-05 41.7 3.6 73 86-161 94-180 (477)
139 cd06438 EpsO_like EpsO protein 69.4 74 0.0016 27.4 13.4 105 114-236 2-113 (183)
140 cd02526 GT2_RfbF_like RfbF is 68.6 87 0.0019 27.9 16.9 86 122-225 11-97 (237)
141 TIGR03111 glyc2_xrt_Gpos1 puta 64.7 1.4E+02 0.0029 30.4 13.1 93 122-231 62-159 (439)
142 cd06433 GT_2_WfgS_like WfgS an 63.0 95 0.0021 26.4 16.6 101 115-235 4-108 (202)
143 cd04195 GT2_AmsE_like GT2_AmsE 62.7 1E+02 0.0022 26.6 12.5 99 114-230 3-107 (201)
144 cd02520 Glucosylceramide_synth 59.9 1.2E+02 0.0026 26.5 11.4 102 115-228 7-111 (196)
145 TIGR03472 HpnI hopanoid biosyn 58.6 1E+02 0.0023 30.4 10.8 102 116-229 48-152 (373)
146 cd06436 GlcNAc-1-P_transferase 58.5 1.3E+02 0.0027 26.3 11.4 103 114-228 2-114 (191)
147 cd06435 CESA_NdvC_like NdvC_li 58.1 1.3E+02 0.0029 26.8 10.7 98 114-229 3-110 (236)
148 cd06421 CESA_CelA_like CESA_Ce 55.2 1.5E+02 0.0032 26.2 12.3 106 115-238 7-118 (234)
149 PRK10714 undecaprenyl phosphat 55.0 2.1E+02 0.0045 27.8 12.2 47 187-237 76-123 (325)
150 cd02522 GT_2_like_a GT_2_like_ 52.2 1.6E+02 0.0035 25.7 10.8 95 114-232 4-101 (221)
151 PRK13915 putative glucosyl-3-p 51.1 2.3E+02 0.0049 27.4 11.5 50 187-239 101-153 (306)
152 PF13641 Glyco_tranf_2_3: Glyc 45.1 24 0.00051 31.5 3.5 106 114-234 6-117 (228)
153 COG1215 Glycosyltransferases, 44.1 2.9E+02 0.0062 27.3 11.5 104 115-233 60-167 (439)
154 cd06420 GT2_Chondriotin_Pol_N 43.3 2E+02 0.0044 24.2 11.5 99 115-228 3-104 (182)
155 PRK10018 putative glycosyl tra 43.2 3E+02 0.0065 26.2 13.2 96 116-230 12-112 (279)
156 cd04196 GT_2_like_d Subfamily 42.4 2.2E+02 0.0049 24.5 12.0 101 114-230 3-106 (214)
157 PRK11498 bcsA cellulose syntha 40.6 3E+02 0.0065 30.8 11.6 96 123-240 275-375 (852)
158 COG0381 WecB UDP-N-acetylgluco 36.2 1E+02 0.0022 31.0 6.5 81 127-218 22-105 (383)
159 PF01983 CofC: Guanylyl transf 35.2 36 0.00078 31.5 3.0 106 90-228 1-113 (217)
160 COG1105 FruK Fructose-1-phosph 32.0 2.9E+02 0.0063 27.0 8.8 124 91-237 30-164 (310)
161 cd06913 beta3GnTL1_like Beta 1 31.1 3.7E+02 0.0079 23.6 13.3 108 115-233 3-114 (219)
162 cd02511 Beta4Glucosyltransfera 29.4 4.2E+02 0.0091 23.7 11.7 93 115-231 6-99 (229)
163 TIGR03030 CelA cellulose synth 23.7 8E+02 0.017 26.8 11.4 48 187-238 214-262 (713)
164 PRK00923 sirohydrochlorin coba 22.9 1.1E+02 0.0023 25.2 3.6 22 122-143 46-67 (126)
165 COG1246 ArgA N-acetylglutamate 21.5 81 0.0018 27.5 2.6 26 122-147 85-110 (153)
166 cd06437 CESA_CaSu_A2 Cellulose 21.4 5.7E+02 0.012 22.6 10.3 38 187-227 72-111 (232)
167 TIGR00288 conserved hypothetic 20.8 5.8E+02 0.013 22.4 9.9 33 204-240 105-137 (160)
168 PRK10063 putative glycosyl tra 20.8 6.6E+02 0.014 23.1 12.9 94 122-234 14-112 (248)
169 PF00583 Acetyltransf_1: Acety 20.0 1.2E+02 0.0026 21.9 3.1 34 122-155 45-78 (83)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-55 Score=422.72 Aligned_cols=262 Identities=45% Similarity=0.815 Sum_probs=238.3
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
++++.|+|||||.|+||.|||+.|+||.+|+||+|+|||++|+||.++||++|.|+|+|++.++.+|++++|+|+++.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
..+++.++.+++..+++.|++||++|+++.++++++...+.+||++|||+|++||.++++.|.+.++|+|+++.+++.+.
T Consensus 81 ~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~e 160 (393)
T COG0448 81 KNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREE 160 (393)
T ss_pred ccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHh
Confidence 44568899888775666799999999999999999878899999999999999999999999999999999999999999
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~ 323 (372)
++.||++.+|++|+|++|.|||..... ...+++||+|+|+.++|.++|++... +..+|
T Consensus 161 as~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~Df 221 (393)
T COG0448 161 ASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDF 221 (393)
T ss_pred hhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccCccccc
Confidence 999999999999999999999987211 12379999999999999999986543 45789
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCCCCCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDF 371 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~~~~~ 371 (372)
+.++||.+++.+ +++||+|+|||.||||+++|++||+.|++.. |.|
T Consensus 222 gkdiIp~~~~~~-~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~-~~~ 267 (393)
T COG0448 222 GKDIIPKLLERG-KVYAYEFSGYWRDVGTIDSYYEANMDLLSPQ-PEL 267 (393)
T ss_pred hHHHHHHHHhcC-CEEEEeccchhhhcccHHHHHHhhHHhcCCC-Ccc
Confidence 999999999955 5999999999999999999999999999944 555
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=8.5e-53 Score=394.23 Aligned_cols=242 Identities=39% Similarity=0.662 Sum_probs=217.1
Q ss_pred cccCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccC
Q 017422 84 PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG 163 (372)
Q Consensus 84 ~~~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~ 163 (372)
|++ .+|+||||.||.||||+|||.++|||++|+| +||||+|+|++|+++||++|++.++|++++++.|+.+.|..++|
T Consensus 5 ~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg-n~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lg 82 (371)
T KOG1322|consen 5 PAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG-NKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELG 82 (371)
T ss_pred ccc-cceeEEEEecCCCceeeceeccCCCcccccC-cchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccc
Confidence 445 6799999999999999999999999999999 57999999999999999999999999999999999999855432
Q ss_pred CCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 164 GYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 164 ~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
|+++..+|++ +.|++||+++++..+|.+++ .+|+||+||++|+++|++|+++|+++++++|+++.+++
T Consensus 83 -------Vei~~s~ete--plgtaGpl~laR~~L~~~~~---~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 83 -------VEILASTETE--PLGTAGPLALARDFLWVFED---APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred -------eEEEEEeccC--CCcccchHHHHHHHhhhcCC---CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 8999988864 78999999999999988853 48999999999999999999999999999999999998
Q ss_pred CCCCcceeEEEECC-CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 244 EKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 244 ~~~~~~~g~v~id~-~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
+ ++.||+|++|+ .|+|.+|.|||+.-. ++.+++|+|+|++++|++++ ..|. +
T Consensus 151 e--pSkyGvv~~d~~~grV~~F~EKPkd~v---------------------snkinaGiYi~~~~vL~ri~--~~pt--S 203 (371)
T KOG1322|consen 151 E--PSKYGVVVIDEDTGRVIRFVEKPKDLV---------------------SNKINAGIYILNPEVLDRIL--LRPT--S 203 (371)
T ss_pred C--ccccceEEEecCCCceeEehhCchhhh---------------------hccccceEEEECHHHHhHhh--hccc--c
Confidence 7 89999999999 899999999998322 35678999999999999887 3453 3
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+++|++|.+++ ++++++|.++|||+|||+|+||+.+..+.+..-
T Consensus 204 iekEifP~~a~-~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~ 247 (371)
T KOG1322|consen 204 IEKEIFPAMAE-EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSL 247 (371)
T ss_pred hhhhhhhhhhh-cCceEEEecCchhhhcCCHHHHHHHHHHHHhhC
Confidence 88999998888 899999999999999999999999977666543
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.8e-46 Score=379.52 Aligned_cols=281 Identities=73% Similarity=1.196 Sum_probs=238.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++||++|+|+++|+.+++.+|+...|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 56799999999999999999999999999999988999999999999999999999999999999999976654432222
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcC---CceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN---VLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~---~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
..+++.++...|+.+++.|++||+++++++++++++.. .++|||++||++++.|+.++++.|+++++++|+++.+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~ 160 (436)
T PLN02241 81 GDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVD 160 (436)
T ss_pred CCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecc
Confidence 33446666555543344578999999999998886532 578999999999999999999999999999999999887
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
.++...||++++|++++|.+|.|||..+......++++++++++...+..++++++|+|+|++++|..++++.+++..+|
T Consensus 161 ~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~ 240 (436)
T PLN02241 161 ESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDF 240 (436)
T ss_pred hhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccch
Confidence 65678999999999999999999997655455667778877766433334579999999999999987877666555577
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
..++++.++.+|.+|++|.++|||.|||++++|++|++.++..+
T Consensus 241 ~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~ 284 (436)
T PLN02241 241 GSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQP 284 (436)
T ss_pred hHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCC
Confidence 89999999987789999999999999999999999999999865
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.3e-43 Score=354.13 Aligned_cols=274 Identities=69% Similarity=1.127 Sum_probs=225.7
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|.+++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.+..+ .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 457899999999999999999999999999999779999999999999999999999999999999998643211 11
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
..+++.++...|...++.|.+||++||++++++++....++|||++||++++.|+.++++.|++.++++|+++.+++.+.
T Consensus 78 ~~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~ 157 (429)
T PRK02862 78 SGGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKD 157 (429)
T ss_pred CCCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhh
Confidence 22345555554544455677999999999999986544578999999999999999999999999999999998765545
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~d 326 (372)
...||++.+|++|+|..|.|||.......+.+++++|...+.+.....+++++|+|+|++++|.+++++.. +..++..+
T Consensus 158 ~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~~~~~~d 236 (429)
T PRK02862 158 ASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EYTDFGKE 236 (429)
T ss_pred cccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-ChhhhHHH
Confidence 67899999999999999999997654444555556665555444444578999999999999987776542 33456789
Q ss_pred hHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 327 vi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+|+.+++ +.++++|.++|+|.||||+++|++||+.++.
T Consensus 237 il~~l~~-~~~v~~~~~~g~w~digt~~~y~~an~~l~~ 274 (429)
T PRK02862 237 IIPEAIR-DYKVQSYLFDGYWEDIGTIEAFYEANLALTQ 274 (429)
T ss_pred HHHHHhc-cCcEEEEEeCCEEEeCCCHHHHHHHHHHHHc
Confidence 9999987 7899999999999999999999999999883
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.9e-43 Score=347.13 Aligned_cols=258 Identities=39% Similarity=0.712 Sum_probs=213.1
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|+|||||||.||||+|||..+||||+||+|++|||+|+|++|.++||++|+|+++|+.+++.+|+.++..|++...
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 4679999999999999999999999999999997789999999999999999999999999999999987555543211
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
.+.+.++...+..+++.|+.||++||++++++++....++|||++||++++.|+.++++.|.+.++++|+++...+...
T Consensus 80 -~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~ 158 (380)
T PRK05293 80 -NGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEE 158 (380)
T ss_pred -CCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhh
Confidence 1124444222222344688999999999999986433478999999999999999999999999999998887664445
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~ 323 (372)
...||++.+|++|+|++|.|||.... ..++++|+|+|++++|.+++++... +..+|
T Consensus 159 ~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 217 (380)
T PRK05293 159 ASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDF 217 (380)
T ss_pred ccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCCchhhh
Confidence 67899999998899999999985432 3588999999999988777765422 22356
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
.+++++.+++++.+|.+|.++|+|.||||+++|++|++.++...
T Consensus 218 ~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~ 261 (380)
T PRK05293 218 GKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPE 261 (380)
T ss_pred HHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCC
Confidence 68999999987889999999999999999999999998888654
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-41 Score=341.43 Aligned_cols=263 Identities=40% Similarity=0.685 Sum_probs=210.0
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
.|++|+|||||||.||||+|||.++||||+||+|+||||+|+|++|.++||++|+|+++|+.+++.+|+...|.. ..
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~--~~- 78 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRL--SG- 78 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCc--cc-
Confidence 467799999999999999999999999999999977999999999999999999999999999999999854321 11
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
....++... .+|....+.|++||++||+++++++.+...++|||++||++++.|+.+++++|.++++++|+++..++.+
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~ 157 (407)
T PRK00844 79 LLGNYITPV-PAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPRE 157 (407)
T ss_pred cCCCeEEEC-CcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchH
Confidence 111223221 1122223457799999999999999653335799999999999999999999999999999988765444
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~ 322 (372)
....||++.+|++|+|+.|.|||...... . .....+++++|+|+|++++|.+++++... +..+
T Consensus 158 ~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~--~------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~ 223 (407)
T PRK00844 158 EASAFGVIEVDPDGRIRGFLEKPADPPGL--P------------DDPDEALASMGNYVFTTDALVDALRRDAADEDSSHD 223 (407)
T ss_pred HcccCCEEEECCCCCEEEEEECCCCcccc--c------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCccccc
Confidence 56789999999999999999998653210 0 00123689999999999998777765321 2245
Q ss_pred hhhhhHHHhhhCCCcEEEEEE------------cCeEeeCCCHHHHHHHHHhccCCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLY------------DGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~------------~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+..|+++.++++ .++.+|.+ +|||.||||+++|++||+.++++.
T Consensus 224 ~~~dii~~l~~~-~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~ 279 (407)
T PRK00844 224 MGGDIIPRLVER-GRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVH 279 (407)
T ss_pred chhhHHHHHhcc-CeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCC
Confidence 668999999995 48999977 599999999999999999999754
No 7
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=1.8e-41 Score=316.65 Aligned_cols=239 Identities=35% Similarity=0.634 Sum_probs=196.2
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCe-EEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISK-IYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~-I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
||||||||.||||+|+|.++||||+|++|++|||+|+|++|.++|+++ |+|+++++.+.+.+|+...+.++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~-------- 72 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFG-------- 72 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGT--------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccccc--------
Confidence 799999999999999999999999999997799999999999999999 55555588899999998865432
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcC-CceEEEEcCCccCcccHHHHHHHHHHcCCCE--EEEEEecCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHN-VLEFLVLAGDHLYRMDYERFIQAHRETDADI--TVAALPMDEKR 246 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~-~~~~Lvl~gD~l~~~dl~~ll~~h~~~~adi--ti~~~~~~~~~ 246 (372)
+++....+ ++ ..||++||+++...+.... .++|||++||++++.++.++++.|+++++++ ++...+ .+.
T Consensus 73 -~~i~~i~~-~~----~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~ 144 (248)
T PF00483_consen 73 -VKIEYIVQ-PE----PLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP--VED 144 (248)
T ss_dssp -EEEEEEEE-SS----SSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE--SSG
T ss_pred -ccceeeec-cc----ccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccc--ccc
Confidence 22222222 11 2699999999999987532 3459999999999999999999999999854 444444 445
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHh--hhCCCCCChh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR--DKFPGANDFG 324 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~--~~~~~~~~~~ 324 (372)
.+.||++++|++|+|++|.|||..... ++++++|+|+|++++|..+++ ........++
T Consensus 145 ~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l 204 (248)
T PF00483_consen 145 PSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFL 204 (248)
T ss_dssp GGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHH
T ss_pred cccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhhhHH
Confidence 789999999999999999999987542 368999999999999986654 1222344567
Q ss_pred hhhHHHhhhCCCcEEEEEEcC--eEeeCCCHHHHHHHHHhccC
Q 017422 325 SEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g--~w~DIgT~ed~~~An~~l~~ 365 (372)
.|+++.+++++..+.++.+++ +|.|||||++|++|++.+++
T Consensus 205 ~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 205 TDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 999999999888899999999 79999999999999998875
No 8
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.4e-41 Score=338.43 Aligned_cols=265 Identities=42% Similarity=0.721 Sum_probs=214.4
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
.+++++|||||||.||||+|||..+||||+||+|++|||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|... ..
T Consensus 12 ~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~~- 89 (425)
T PRK00725 12 LTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-RE- 89 (425)
T ss_pred hhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-cc-
Confidence 3467999999999999999999999999999999845999999999999999999999999999999998754221 00
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
....++.++.+.+....++|++||++|++++++++++...++|||++||++++.|+.++++.|.++++++|+++.++..+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 01233555554443334457799999999999999754457899999999999999999999999999999998776545
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~ 322 (372)
....||++.+|++++|+.|.|||..+.. ++ .....+++++|+|+|++++|.++|++... ...+
T Consensus 170 ~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~ 235 (425)
T PRK00725 170 EASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHD 235 (425)
T ss_pred hcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccch
Confidence 5789999999989999999999864321 00 00124689999999999988777765321 2346
Q ss_pred hhhhhHHHhhhCCCcEEEEEEc-----------CeEeeCCCHHHHHHHHHhccCCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~-----------g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
|..|+++.+++ ..+|++|.++ +||.||||+++|++||+.+++..
T Consensus 236 ~~~dii~~l~~-~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~ 290 (425)
T PRK00725 236 FGKDIIPKIVE-EGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT 290 (425)
T ss_pred hhHHHHHHHhc-cCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC
Confidence 77899999998 5589999996 59999999999999999998754
No 9
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.8e-40 Score=317.97 Aligned_cols=248 Identities=21% Similarity=0.293 Sum_probs=192.3
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc-----
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN----- 161 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~----- 161 (372)
|.+|+|||||||.||||+|+|.++||||+||+|+ |+|+|+|+++.++||++|+|+++|..+++.+|+...+...
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999997 9999999999999999999999999999999997643210
Q ss_pred ---------cCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc--------ccHHHH
Q 017422 162 ---------MGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (372)
Q Consensus 162 ---------l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (372)
.+.....+ +.+....| +|+.||++||++++.+++ +++|+|++||++++ .++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~i~~~~q-----~~~lGtg~Av~~a~~~l~---~~~flvv~gD~l~~~~~~~~~~~~l~~l 150 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG-VTIMNVRQ-----AQPLGLGHSILCARPVVG---DNPFVVVLPDIIIDDATADPLRYNLAAM 150 (297)
T ss_pred hcchhhhhhhhhcCCCC-ceEEEeeC-----CCcCchHHHHHHHHHHhC---CCCEEEEECCeeccccccccchhHHHHH
Confidence 00000001 22222222 246999999999999884 36899999999987 589999
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEEE----CCCCc---eEEEEecCChhhhhhhccccccccCCchhcccCCceE
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMKI----DEEGR---IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~i----d~~g~---V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 297 (372)
++.|.++++.++++ .++.+ ..+.||++.+ |++|+ |.+|.|||..+.. ..++++
T Consensus 151 i~~~~~~~~~~~~~-~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------~~s~~~ 210 (297)
T TIGR01105 151 IARFNETGRSQVLA-KRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEE-EEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------CCcCEE
Confidence 99998888776444 44332 2689999998 44575 5899999864321 024689
Q ss_pred EEEEEEEeHHHHHHHHhhhCCC-CCC-hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 298 SMGIYVISKDVMLNLLRDKFPG-AND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 298 ~~Giyv~~~~~l~~ll~~~~~~-~~~-~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
++|+|+|++++|. .++...++ .++ .++|+++.+++ +.++.+|.++|+|+|||||++|.+||..+...
T Consensus 211 ~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~-~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~l~ 279 (297)
T TIGR01105 211 AVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred EEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHh-cCCEEEEEeccEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999887 55544332 122 25799999998 56999999999999999999999999886533
No 10
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=3.9e-39 Score=310.30 Aligned_cols=246 Identities=22% Similarity=0.300 Sum_probs=192.4
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc-----
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN----- 161 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~----- 161 (372)
|..|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+|+++.++||++|+|++++..+++.+|+...+..+
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 4679999999999999999999999999999997 9999999999999999999999999999999997533110
Q ss_pred ------c---CCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc--------ccHHHH
Q 017422 162 ------M---GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERF 224 (372)
Q Consensus 162 ------l---~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~l 224 (372)
+ +.....+ +.+....| ++ +.||++||+++++++. +++|+|++||++++ .|+.++
T Consensus 80 ~~k~~~l~~~~~~~~~~-~~i~~~~q--~~---~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~l 150 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG-VTIMNVRQ--GQ---PLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAM 150 (297)
T ss_pred cchhhhHHhhhhccCCC-ceEEEeec--CC---cCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHH
Confidence 0 0000011 22322233 12 3899999999999883 46799999999986 479999
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEEEC----CCC---ceEEEEecCChhhhhhhccccccccCCchhcccCCceE
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIA 297 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~id----~~g---~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 297 (372)
++.|.+.+++++++. ...+ ....||++.+| ++| +|++|.|||..+.. ..++++
T Consensus 151 i~~h~~~~~~~~~~~-~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~------------------~~s~~~ 210 (297)
T PRK10122 151 IARFNETGRSQVLAK-RMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------LDSDLM 210 (297)
T ss_pred HHHHHHhCCcEEEEE-ECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc------------------CCccEE
Confidence 999998888755444 4332 46899999996 456 78999999864311 014689
Q ss_pred EEEEEEEeHHHHHHHHhhhCCC--CCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 298 SMGIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 298 ~~Giyv~~~~~l~~ll~~~~~~--~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
++|+|+|++++|..+ ....+. ....++|+++.+++ +.+|.+|.++|+|+|||||++|.+|+..+.
T Consensus 211 ~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~-~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 211 AVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAK-KQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred EEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHh-CCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 999999999998754 433332 12345899999998 579999999999999999999999999984
No 11
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.6e-39 Score=304.18 Aligned_cols=235 Identities=20% Similarity=0.369 Sum_probs=192.8
Q ss_pred EEEEeCC--CCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 92 GIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 92 aIILAaG--~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
||||||| .||||+|+|..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+++.+|+...... .
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~-------~ 72 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQE-------F 72 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccc-------c
Confidence 6999999 8999999999999999999998 999999999999 699999999999999999999763110 0
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCc
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (372)
+ +.+....+ .. ..||++++.+++.+++....++|||++||++++.|+.+++++|+++++++|+++.+++.+...
T Consensus 73 ~-~~i~~~~~--~~---~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~ 146 (257)
T cd06428 73 N-VPIRYLQE--YK---PLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQAS 146 (257)
T ss_pred C-ceEEEecC--Cc---cCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccc
Confidence 1 22222222 11 389999999999988643457899999999999999999999999999999999887544568
Q ss_pred ceeEEEEC-CCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC--------
Q 017422 249 AFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-------- 319 (372)
Q Consensus 249 ~~g~v~id-~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-------- 319 (372)
.||++.+| ++|+|++|.|||.... +.++++|+|+|++++|.. +.+..+.
T Consensus 147 ~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~-i~~~~~~~~~e~~~~ 204 (257)
T cd06428 147 NYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDT-IKKAFQSRQQEAQLG 204 (257)
T ss_pred cccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHH-Hhhhccccccccccc
Confidence 89999998 6799999999986432 358899999999999864 4432221
Q ss_pred ----------CCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhc
Q 017422 320 ----------ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 320 ----------~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l 363 (372)
..++..|+++.+++ ..+|++|.++|+|.||||+++|++||+.+
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~l~~-~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 205 DDNNREGRAEVIRLEQDVLTPLAG-SGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred cccccccccceeeehhhhhhHHhc-cCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 12344799999998 45999999999999999999999999853
No 12
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-39 Score=318.24 Aligned_cols=236 Identities=29% Similarity=0.519 Sum_probs=198.3
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
.|+|||||||.||||+|||.++||||+||+|+ |||+|+|+.|.++|+++|+|+++|..+++.+|+.+++.++
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~------- 72 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLG------- 72 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccC-------
Confidence 48999999999999999999999999999987 9999999999999999999999999999999999864322
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCc
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (372)
+.+....+ .+ .+||+++|+++.+++.. ++|++++||++++.|+..++++|+++.+..++....+.+. .
T Consensus 73 --~~I~y~~e--~~---~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~ 140 (358)
T COG1208 73 --VRITYVVE--KE---PLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--S 140 (358)
T ss_pred --CceEEEec--CC---cCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--C
Confidence 12222111 11 48999999999988852 7999999999999999999999999988888888887654 7
Q ss_pred ceeEEEECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhh
Q 017422 249 AFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (372)
Q Consensus 249 ~~g~v~id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dv 327 (372)
.||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. ++... ...+|..++
T Consensus 141 ~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~~--~~~~~~~~~ 198 (358)
T COG1208 141 EFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEKG--ERFDFEEEL 198 (358)
T ss_pred cCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hcccC--CcccchhhH
Confidence 8999998854 599999999953111 247999999999999997 33322 334566789
Q ss_pred HHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
++.+++++..+++|.++|+|.|||||+||.+|+..++..
T Consensus 199 ~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~ 237 (358)
T COG1208 199 LPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRG 237 (358)
T ss_pred HHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhc
Confidence 999999666699999999999999999999999998853
No 13
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.1e-38 Score=296.29 Aligned_cols=232 Identities=24% Similarity=0.380 Sum_probs=193.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|+++++.+++.+|+... .. ..+
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~-~~------~~~ 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEY-EK------KLG 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcc-cc------cCC
Confidence 7899999999999999999999999999997 999999999999999999999999999999998752 11 111
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCcc
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (372)
++++...+ . ...||++++.+++.+++. ..++|||++||++++.++.++++.|+++++++++++.+.++ .+.
T Consensus 73 -~~i~~~~~--~---~~~G~~~al~~a~~~~~~-~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 143 (233)
T cd06425 73 -IKITFSIE--T---EPLGTAGPLALARDLLGD-DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED--PSK 143 (233)
T ss_pred -eEEEeccC--C---CCCccHHHHHHHHHHhcc-CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC--ccc
Confidence 33433211 1 138999999999988853 24679999999999999999999999999999999988654 468
Q ss_pred eeEEEECC-CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhH
Q 017422 250 FGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (372)
Q Consensus 250 ~g~v~id~-~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi 328 (372)
||++.+|+ +|+|++|.|||.... ++++++|+|+|++++|.. +... ..+...+++
T Consensus 144 ~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~-l~~~---~~~~~~~~~ 198 (233)
T cd06425 144 YGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDR-IPLR---PTSIEKEIF 198 (233)
T ss_pred cCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHh-cccC---cccchhhhH
Confidence 99999988 799999999986432 357899999999999864 4321 223456899
Q ss_pred HHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 329 ~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
+.+++ ..+|.+|.++|+|.||||+++|++|+..++
T Consensus 199 ~~l~~-~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 199 PKMAS-EGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred HHHHh-cCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 99998 469999999999999999999999998764
No 14
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.5e-39 Score=296.82 Aligned_cols=234 Identities=25% Similarity=0.423 Sum_probs=205.5
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecC-ChhhHHHHHHHhhhcccCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~-~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
|||||||||.||||+|+|...||+|+||.++ |||+|+|+.|..+||++|+|++++ ....+.+++.++..|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~g------- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFG------- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccC-------
Confidence 7999999999999999999999999999997 999999999999999999999998 5577787877755443
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCc
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (372)
+.+-+..|. + +.|-|+|+..+.+++. +++|+++.||.++..++.++++.+.+.+.++++...++++ ++
T Consensus 73 --v~itY~~Q~--~---p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d--P~ 140 (286)
T COG1209 73 --VDITYAVQP--E---PDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD--PS 140 (286)
T ss_pred --cceEEEecC--C---CCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC--cc
Confidence 445455552 2 3899999999988884 5899999999988779999999999888999999999986 68
Q ss_pred ceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-hhh
Q 017422 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GSE 326 (372)
Q Consensus 249 ~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~~d 326 (372)
.||++++|++|+|+++.|||..+. ++++-+|+|+|++++|. .++...|. +.++ ++|
T Consensus 141 rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd 198 (286)
T COG1209 141 RYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITD 198 (286)
T ss_pred cceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHH-HHHcCCCCCCCceEehH
Confidence 999999999999999999998764 68999999999999997 66776663 4455 499
Q ss_pred hHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 327 VIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 327 vi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+++.++++|..+......|.|.|.||++||.+|+..+..
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 15
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2e-38 Score=313.04 Aligned_cols=258 Identities=48% Similarity=0.878 Sum_probs=206.9
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.||||+|+|+++||||+||+|++|||+|+++++.++|+++|+|++++..+++.+|+.+.|.. ... ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~--~~~-~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDF--DGF-IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCc--cCc-cCCCE
Confidence 699999999999999999999999999965899999999999999999999999999999999864321 110 11235
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
+++...+...+++|..||+++++++++++++...++|+|++||++++.++.++++.|.+.++++++++.+.+.+....||
T Consensus 78 ~~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g 157 (361)
T TIGR02091 78 TLLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFG 157 (361)
T ss_pred EEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhccccc
Confidence 55443333234567799999999999988643357899999999999999999999998888888888776544567899
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCChhhhhH
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSEVI 328 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~~~dvi 328 (372)
++.+|++|+|..|.|||..+... .+ ....+++++|+|+|++++|.+++++... ...++..++|
T Consensus 158 ~v~~d~~~~v~~~~ekp~~~~~~--------~~------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l 223 (361)
T TIGR02091 158 VMQVDEDGRIVDFEEKPANPPSI--------PG------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDII 223 (361)
T ss_pred EEEECCCCCEEEEEECCCCcccc--------cc------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHH
Confidence 99999889999999998543210 00 0012478999999999998667665321 2235668999
Q ss_pred HHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 329 ~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+.+++ ..++++|.++++|.||||+++|++|++.++++.
T Consensus 224 ~~l~~-~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~ 261 (361)
T TIGR02091 224 PRALE-EGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVV 261 (361)
T ss_pred HHHhh-cCceEEEeeCCEEEECCCHHHHHHHHHHHhCCC
Confidence 99998 459999999999999999999999999999754
No 16
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.1e-38 Score=315.86 Aligned_cols=252 Identities=25% Similarity=0.426 Sum_probs=196.5
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChh-hHHHHHHHhhhcccCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~~~ 167 (372)
.|+|||||+|.||||+|||.++||||+||+|++|||+|+|++|.++|+++|+|+++|..+ ++.+|+.++..|++... .
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~-~ 80 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRK-R 80 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccc-c
Confidence 589999999999999999999999999999976999999999999999999999999887 99999987544443211 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
.+...++ .+ +.+.|-.|+++++.+++++++....++|||++||++++.|+.+++++|+++++++|+++.+++....
T Consensus 81 ~~~~~~~--~~--e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~ 156 (369)
T TIGR02092 81 DGLFVFP--YN--DRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADA 156 (369)
T ss_pred CcEEEEe--cc--CCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHc
Confidence 1111111 22 2222335777789999988854334789999999999999999999999999999999988753335
Q ss_pred cce-eEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC-CCCChhh
Q 017422 248 TAF-GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFGS 325 (372)
Q Consensus 248 ~~~-g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~-~~~~~~~ 325 (372)
..| +++..|++|+|..|.+++.... ...+++|+|+|++++|.++++...+ +..++..
T Consensus 157 ~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 215 (369)
T TIGR02092 157 SEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGKLTSLE 215 (369)
T ss_pred cccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCccccHH
Confidence 567 4566777788888754332211 2366899999999988767665433 2234567
Q ss_pred hhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
++++.+++ +.++++|.++|+|.||||+++|++|++.++++.
T Consensus 216 d~i~~~~~-~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~ 256 (369)
T TIGR02092 216 ELIRENLK-ELNINAYEYTGYLANINSVKSYYKANMDLLDPQ 256 (369)
T ss_pred HHHHHHhc-cCcEEEEecCCceeEcCCHHHHHHHHHHHhCCc
Confidence 89999887 679999999999999999999999998887653
No 17
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=6.5e-38 Score=300.87 Aligned_cols=236 Identities=23% Similarity=0.381 Sum_probs=190.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEec-CChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~-~~~~~i~~~l~~~~~~~l~~~ 165 (372)
|..|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+||++|+|+++ +..+.+.+|+.++..|++
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~g~--- 76 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWGL--- 76 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCccccCc---
Confidence 4579999999999999999999999999999997 99999999999999999997765 456788889877544432
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.+-...| +. +.||++|+..+.+++. .+++++++||.++ +.++.++++.|.+.++++|+++.++++
T Consensus 77 ------~i~y~~q--~~---~~Gta~Al~~a~~~i~---~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~ 142 (292)
T PRK15480 77 ------NLQYKVQ--PS---PDGLAQAFIIGEEFIG---GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVND 142 (292)
T ss_pred ------eeEEEEC--CC---CCCHHHHHHHHHHHhC---CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 1211222 11 3899999999999884 3468888899754 789999999998888899988887754
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF 323 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~ 323 (372)
...||++++|++|+|++|.|||..+. ++++++|+|+|+++++. .++...+. ..++
T Consensus 143 --p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~-~~~~~~~~~~ge~ 198 (292)
T PRK15480 143 --PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVE-MAKNLKPSARGEL 198 (292)
T ss_pred --cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHH-HHhhcCCCCCCee
Confidence 57899999999999999999986432 46899999999999886 55544342 2233
Q ss_pred -hhhhHHHhhhCCCcEEEEEEcCe-EeeCCCHHHHHHHHHhcc
Q 017422 324 -GSEVIPGATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 324 -~~dvi~~li~~g~~V~a~~~~g~-w~DIgT~ed~~~An~~l~ 364 (372)
++++++.++++|..+.++..+|+ |+|+||+++|.+|+..+.
T Consensus 199 ~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 199 EITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 48999999986655555677785 999999999999998765
No 18
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.6e-37 Score=294.23 Aligned_cols=244 Identities=23% Similarity=0.306 Sum_probs=190.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc-----cCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN-----MGG 164 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~-----l~~ 164 (372)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.++ .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 7899999999999999999999999999997 9999999999999999999999999999999997644321 000
Q ss_pred CC--------CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcc---cHHHHHHHHHHcCC
Q 017422 165 YK--------NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDA 233 (372)
Q Consensus 165 ~~--------~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~a 233 (372)
.+ ..+ +++.... +++..||+++|++++.+++ .++|+|++||+++.. ++.++++.|++.++
T Consensus 80 ~~~~~~~~~~~~~-~~i~~~~-----~~~~~Gt~~al~~~~~~i~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 80 TDLLEEVRIISDL-ANIHYVR-----QKEPLGLGHAVLCAKPFIG---DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred HHHhhhhhcccCC-ceEEEEE-----cCCCCChHHHHHHHHHHhC---CCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 00 001 1221111 1235899999999998884 368999999998864 49999999988777
Q ss_pred CEEEEEEecCCCCCcceeEEEECC----CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHH
Q 017422 234 DITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (372)
Q Consensus 234 diti~~~~~~~~~~~~~g~v~id~----~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l 309 (372)
++ +++.+++.+....||++.+|+ +++|.+|.|||..... .+.++++|+|+|++++|
T Consensus 151 ~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~ 210 (267)
T cd02541 151 SV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLTPDIF 210 (267)
T ss_pred CE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcCHHHH
Confidence 74 555565544567899999985 2589999999864211 13588999999999988
Q ss_pred HHHHhhhCC-CCCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 310 LNLLRDKFP-GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 310 ~~ll~~~~~-~~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
..+...... ....+..++++.+++++ +|.+|.++|+|.||||+++|++||+.+.
T Consensus 211 ~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 211 DILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 755331111 12234679999999855 9999999999999999999999999875
No 19
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.7e-37 Score=288.29 Aligned_cols=232 Identities=24% Similarity=0.361 Sum_probs=187.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCC-hhhHHHHHHHhhhcccCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~-~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++. .+++.+|+..+..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~~------- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDLG------- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcccccC-------
Confidence 7899999999999999999999999999985 9999999999999999999998754 478888987643332
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.+....+ .. ..||++++++++.+++ .++|+|++||+++ +.++.++++.|.++++++++++.++++ .
T Consensus 73 --~~i~~~~~--~~---~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (240)
T cd02538 73 --IRITYAVQ--PK---PGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--P 140 (240)
T ss_pred --ceEEEeeC--CC---CCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--h
Confidence 22322222 11 3899999999998884 3679999999755 667999999999888999998888754 4
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-hh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GS 325 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~~ 325 (372)
..||++.+|++|+|++|.|||.... ...+++|+|+|++++|. +++...+. ..++ .+
T Consensus 141 ~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~ 198 (240)
T cd02538 141 ERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARGELEIT 198 (240)
T ss_pred hcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhH
Confidence 6799999999999999999986432 24789999999999884 66544332 2222 47
Q ss_pred hhHHHhhhCCCcEEEEEEc--CeEeeCCCHHHHHHHHHhcc
Q 017422 326 EVIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~--g~w~DIgT~ed~~~An~~l~ 364 (372)
++++.++++ .++.++.++ |+|+||||+++|++|+..+.
T Consensus 199 d~~~~l~~~-g~~~~~~~~~~g~w~digt~~~~~~a~~~~~ 238 (240)
T cd02538 199 DVNNEYLEK-GKLSVELLGRGFAWLDTGTHESLLEASNFVQ 238 (240)
T ss_pred HHHHHHHHh-CCeEEEEeCCCcEEEeCCCHHHHHHHHHHHh
Confidence 999999984 467777776 99999999999999998763
No 20
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=2e-37 Score=292.30 Aligned_cols=241 Identities=19% Similarity=0.286 Sum_probs=191.2
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhc--ccCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGYKNE 168 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~--~l~~~~~~ 168 (372)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|+++|+.+++.+|+.+.... ++......
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999997 999999999999999999999999999999999763211 10000000
Q ss_pred CcEEEeecc-------cCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEe
Q 017422 169 GFVEVLAAQ-------QSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALP 241 (372)
Q Consensus 169 ~~v~il~~~-------~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~ 241 (372)
+-..+.... ...+. -.+||+++|++++.+++ .++|||++||++++.|+.++++.|.+.++++|++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~ 154 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTG--ESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ 154 (254)
T ss_pred cccccccccCCccceeeeecC--CcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec
Confidence 000000000 00011 13899999999998884 4789999999999999999999999999999887653
Q ss_pred cCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCC
Q 017422 242 MDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (372)
Q Consensus 242 ~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~ 321 (372)
....||.+.+|+ ++|++|.|||... +..+++|+|+|++++|. +++.. ..
T Consensus 155 ----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~~---~~ 203 (254)
T TIGR02623 155 ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDGD---AT 203 (254)
T ss_pred ----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hcccc---Cc
Confidence 246799999985 6999999998532 24789999999999884 66532 23
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCCCC
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~~~ 369 (372)
++..|+++.++++ .+|.+|.++|+|.||||+++|.+|+..+....+|
T Consensus 204 ~~~~d~i~~l~~~-~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~~~ 250 (254)
T TIGR02623 204 VWEQEPLETLAQR-GELSAYEHSGFWQPMDTLRDKNYLEELWESGRAP 250 (254)
T ss_pred hhhhhHHHHHHhC-CCEEEEeCCCEEecCCchHHHHHHHHHHHcCCCC
Confidence 5668999999995 4899999999999999999999999999887755
No 21
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=2.7e-37 Score=291.41 Aligned_cols=240 Identities=20% Similarity=0.274 Sum_probs=186.0
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhccc-----CC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNM-----GG 164 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l-----~~ 164 (372)
|+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+.++. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 7899999999999999999999999999997 99999999999999999999999999999999975432110 00
Q ss_pred C------C-CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcc---cHHHHHHHHHHcCCC
Q 017422 165 Y------K-NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRETDAD 234 (372)
Q Consensus 165 ~------~-~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~~ad 234 (372)
. . ....+.+.... +.+..||++++++++.++. .++|+|++||+++.. ++.+++++|.+++++
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~-----~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVR-----QKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred HHHHHHhhhccccceEEEEe-----cCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 0 0 00011121111 1235899999999998883 478999999998753 799999999999988
Q ss_pred EEEEEEecCCCCCcceeEEEECC----CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHH
Q 017422 235 ITVAALPMDEKRATAFGLMKIDE----EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVML 310 (372)
Q Consensus 235 iti~~~~~~~~~~~~~g~v~id~----~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~ 310 (372)
+ +++..++.+....||++.+|. +++|+.|.|||..... .+..+++|+|+|++++|.
T Consensus 152 i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~~~~~~ 211 (260)
T TIGR01099 152 I-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLTPDIFD 211 (260)
T ss_pred E-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECCHHHHH
Confidence 6 556565544568899999862 3799999999853211 135889999999999887
Q ss_pred HHHhhhCCCC-CChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHH
Q 017422 311 NLLRDKFPGA-NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (372)
Q Consensus 311 ~ll~~~~~~~-~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~A 359 (372)
.+........ ..+..++++.+++. .+|++|.++|+|.||||+++|++|
T Consensus 212 ~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 212 LLEETPPGAGGEIQLTDALRKLLEK-ETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHhCCCCCCCceeHHHHHHHHHhc-CCEEEEEcceEEEeCCCHHHHhhC
Confidence 5543222111 23357999999984 689999999999999999999875
No 22
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=8.1e-37 Score=292.70 Aligned_cols=231 Identities=26% Similarity=0.405 Sum_probs=187.1
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEec-CChhhHHHHHHHhhhcccCCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~-~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+|||||||.||||+|+|+.+||||+||+|+ |||+|+|+++..+||++|+|+++ +..+.+.+|+.++..++
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~g-------- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQWG-------- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccccccC--------
Confidence 589999999999999999999999999997 99999999999999999998875 56678888887643332
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-CcccHHHHHHHHHHcCCCEEEEEEecCCCCCc
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (372)
+.+....| .. +.||++|+.++..+++ .++|+++.||++ ++.++.++++.|.+.++++|+++.++++ +.
T Consensus 72 -~~i~~~~q--~~---~~Gta~al~~a~~~l~---~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~--p~ 140 (286)
T TIGR01207 72 -VNLSYAVQ--PS---PDGLAQAFIIGEDFIG---GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSD--PE 140 (286)
T ss_pred -ceEEEEEc--cC---CCCHHHHHHHHHHHhC---CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccC--HH
Confidence 22332233 12 3899999999999884 367888899974 5788999999999888899998888764 57
Q ss_pred ceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-hhh
Q 017422 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GSE 326 (372)
Q Consensus 249 ~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~~d 326 (372)
.||++++|++|+|++|.|||..+. ++++++|+|+|++++++ +++...+. ..++ ++|
T Consensus 141 ~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitd 198 (286)
T TIGR01207 141 RYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVE-IARQLKPSARGELEITD 198 (286)
T ss_pred HCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHH
Confidence 899999999999999999986432 45899999999999875 66554442 2333 479
Q ss_pred hHHHhhhCCCcEEEEEE-cCe-EeeCCCHHHHHHHHHhcc
Q 017422 327 VIPGATSIGMRVQAYLY-DGY-WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 327 vi~~li~~g~~V~a~~~-~g~-w~DIgT~ed~~~An~~l~ 364 (372)
+++.++++| ++.++.+ +|+ |+||||+++|.+|+..+.
T Consensus 199 v~~~~l~~g-~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 199 LNRVYLEEG-RLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred HHHHHHHcC-CcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 999999855 4555555 676 999999999999998765
No 23
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=2.1e-36 Score=280.90 Aligned_cols=234 Identities=26% Similarity=0.396 Sum_probs=193.6
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+.....+++
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~------- 72 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRFGV------- 72 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhcCC-------
Confidence 7899999999999999999999999999997 99999999999999999999999999999999876543321
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCcc
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (372)
.+.++. + .+..||+++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.++ ...
T Consensus 73 ~i~~~~--~-----~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (236)
T cd04189 73 RITYIL--Q-----EEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED--PRR 140 (236)
T ss_pred eEEEEE--C-----CCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC--ccc
Confidence 122221 1 124799999999998874 3689999999999999999999999999999998888654 467
Q ss_pred eeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC--CCChhhhh
Q 017422 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (372)
Q Consensus 250 ~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~--~~~~~~dv 327 (372)
||++.+|+ ++|.+|.|||.... +.++++|+|+|++++|. .++...+. ...+..++
T Consensus 141 ~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~d~ 197 (236)
T cd04189 141 FGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFD-AISRLKPSWRGELEITDA 197 (236)
T ss_pred ceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHH-HHHhcCCCCCCeEEHHHH
Confidence 89888875 59999999985321 24789999999999886 44433221 12235799
Q ss_pred HHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
++.++++|.+|.+|+++++|.||||++||.+|++.++++
T Consensus 198 ~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~~ 236 (236)
T cd04189 198 IQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLDK 236 (236)
T ss_pred HHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHhC
Confidence 999998788999999999999999999999999988763
No 24
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.4e-36 Score=293.10 Aligned_cols=244 Identities=23% Similarity=0.324 Sum_probs=193.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--cCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l~~~ 165 (372)
+.|+|||||||.||||+|+|+.+||||+||+|+ |+|+|+|+++.++||++|+|++++..+++.+|+..++.++ +...
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 458999999999999999999999999999997 9999999999999999999999999999999998654332 1000
Q ss_pred CCCC-----------cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc--------ccHHHHHH
Q 017422 166 KNEG-----------FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--------MDYERFIQ 226 (372)
Q Consensus 166 ~~~~-----------~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~--------~dl~~ll~ 226 (372)
...+ .+.+....| ....||++|++++..++. +++|+|++||++++ .++.++++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-----~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~ 157 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIR 157 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-----CCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHH
Confidence 0000 011111111 224899999999998873 47899999999874 68999999
Q ss_pred HHHHcCCCEEEEEEecCCCCCcceeEEEECC-------CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEE
Q 017422 227 AHRETDADITVAALPMDEKRATAFGLMKIDE-------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (372)
Q Consensus 227 ~h~~~~aditi~~~~~~~~~~~~~g~v~id~-------~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 299 (372)
.|.+++++ ++++.++++ ...||++.+|. +++|.+|.|||..... .++++++
T Consensus 158 ~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s~~~~~ 215 (302)
T PRK13389 158 RFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAIV 215 (302)
T ss_pred HHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------CccEEEE
Confidence 99988887 677777643 67899998863 3589999999974321 1358999
Q ss_pred EEEEEeHHHHHHHHhhhCCC--CCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 300 GIYVISKDVMLNLLRDKFPG--ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 300 Giyv~~~~~l~~ll~~~~~~--~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
|+|+|++++| ++++...++ ...+++|+++.+++ +.+|.+|.++|+|+|||||++|.+|+..+.
T Consensus 216 GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~-~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 216 GRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIE-KETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred EEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHH-cCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 9999999988 467654322 22346899999999 569999999999999999999999999874
No 25
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.8e-36 Score=283.93 Aligned_cols=244 Identities=18% Similarity=0.282 Sum_probs=193.2
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--cCCCCCCC
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGYKNEG 169 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l~~~~~~~ 169 (372)
|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++||++|+|+++|+.+++.+|+.+.+..+ +......+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999997 9999999999999999999999999999999998743211 00000001
Q ss_pred cEEEeecccCC-----CCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 170 FVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 170 ~v~il~~~~~~-----~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.+.++.....+ ..+.-..||++++++++.++.. .++|+|++||++++.++.++++.|.+.++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~--- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH--- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec---
Confidence 12222210000 0000126899999999988842 2689999999999999999999999999999887653
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~ 324 (372)
....||.+.+|++|+|..+.|||... +..+++|+|+|+++++. .+... ..++.
T Consensus 155 -~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~-~l~~~---~~~~~ 207 (253)
T cd02524 155 -PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFD-YIDGD---DTVFE 207 (253)
T ss_pred -CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHH-hhccc---cchhh
Confidence 24678999999999999999998643 13789999999999885 44332 34556
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCCCC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~~~ 369 (372)
+++++.++++ .++.+|.++|+|.||||++||.+|+..+.....|
T Consensus 208 ~d~l~~li~~-~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~~~~ 251 (253)
T cd02524 208 REPLERLAKD-GELMAYKHTGFWQCMDTLRDKQTLEELWNSGKAP 251 (253)
T ss_pred HHHHHHHHhc-CCEEEEecCCEEEeCcCHHHHHHHHHHHHcCCCC
Confidence 8999999985 4899999999999999999999999999877765
No 26
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=1.8e-36 Score=298.34 Aligned_cols=234 Identities=24% Similarity=0.369 Sum_probs=195.4
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecC-ChhhHHHHHHHhhhcccCCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~-~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++ +.+++.+|+..+..|++ .
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~~~------~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERFGA------K 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccccCc------e
Confidence 589999999999999999999999999997 999999999999999999999999 89999999976433321 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCcc
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATA 249 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (372)
+.++ .+ .+..||++++++++.+++ .++|+|++||++++.++.++++.|.++++++++++.+.++ ...
T Consensus 74 -~~~~--~~-----~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~--~~~ 140 (353)
T TIGR01208 74 -ITYI--VQ-----GEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD--PTA 140 (353)
T ss_pred -EEEE--EC-----CCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC--hhh
Confidence 2222 11 124899999999998884 3679999999999999999999999999999999888654 467
Q ss_pred eeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC--CCChhhhh
Q 017422 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--ANDFGSEV 327 (372)
Q Consensus 250 ~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~--~~~~~~dv 327 (372)
||++..|++++|++|.|||.... +..+++|+|+|++.+++ .+++..+. ...+..++
T Consensus 141 ~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~ 198 (353)
T TIGR01208 141 FGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDA 198 (353)
T ss_pred CeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHH
Confidence 89888876789999999986432 35789999999997665 56544331 22235899
Q ss_pred HHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
++.++++|.+|++|.++|+|.|||||+||++|++.++++
T Consensus 199 l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~ 237 (353)
T TIGR01208 199 IQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDE 237 (353)
T ss_pred HHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhh
Confidence 999998788999999999999999999999999999974
No 27
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=2.3e-36 Score=278.26 Aligned_cols=219 Identities=24% Similarity=0.350 Sum_probs=181.1
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCc
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~ 170 (372)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++||++|+|+++++.+++.+|+.+ ..++
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~--------- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD-SRFG--------- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc-ccCC---------
Confidence 589999999999999999999999999997 99999999999999999999999999999999876 2222
Q ss_pred EEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHH--HcCCCEEEEEEecCCCCCc
Q 017422 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHR--ETDADITVAALPMDEKRAT 248 (372)
Q Consensus 171 v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~--~~~aditi~~~~~~~~~~~ 248 (372)
+.+....+. .+..||+++|++++.+++ .++|+|++||++++.++.++++.|. +.++++++...+.+ ...
T Consensus 70 ~~i~~~~~~----~~~~g~~~~l~~~~~~~~---~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 140 (221)
T cd06422 70 LRITISDEP----DELLETGGGIKKALPLLG---DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHN 140 (221)
T ss_pred ceEEEecCC----CcccccHHHHHHHHHhcC---CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCC
Confidence 223222211 124799999999998884 3689999999999999999999998 46666776665543 356
Q ss_pred ceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhH
Q 017422 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVI 328 (372)
Q Consensus 249 ~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi 328 (372)
.||.+.+|++|+|..+.|||.. +.+++|+|+|++++|..+.+. .....+++
T Consensus 141 ~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~ 191 (221)
T cd06422 141 GVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFSLNPLW 191 (221)
T ss_pred CcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----cccHHHHH
Confidence 8899999999999999888742 378999999999988755332 22357999
Q ss_pred HHhhhCCCcEEEEEEcCeEeeCCCHHHHHHH
Q 017422 329 PGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (372)
Q Consensus 329 ~~li~~g~~V~a~~~~g~w~DIgT~ed~~~A 359 (372)
+.+++ ..++.+|.++|+|.||||++||.+|
T Consensus 192 ~~l~~-~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 192 DRAIA-AGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHH-cCCeEEEecCCEEEcCCCHHHHhhC
Confidence 99998 4589999999999999999999875
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=4e-35 Score=268.63 Aligned_cols=223 Identities=27% Similarity=0.498 Sum_probs=184.7
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.++. . +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~~~------~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRGGI------R-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCccccCc------e-E
Confidence 69999999999999999999999999997 99999999999999999999999999999989876332210 0 2
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.+.. + .+ ..|+++++..++..++ .++|+|++||+++..++.++++.|++.+.++++++.+.++ ...|+
T Consensus 73 ~~~~--~--~~---~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~ 140 (223)
T cd06915 73 YYVI--E--PE---PLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD--ASRYG 140 (223)
T ss_pred EEEE--C--CC---CCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--CCcce
Confidence 2211 1 11 3899999999988773 4789999999999889999999999888999988888644 46789
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHh
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~l 331 (372)
.+.+|++|+|..|.|||.... ++++++|+|+|++++|..+... ...++.++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l 195 (223)
T cd06915 141 NVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEADVLPAL 195 (223)
T ss_pred eEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHH
Confidence 899998899999999876431 3588999999999998744222 234568999999
Q ss_pred hhCCCcEEEEEEcCeEeeCCCHHHHHHHH
Q 017422 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (372)
Q Consensus 332 i~~g~~V~a~~~~g~w~DIgT~ed~~~An 360 (372)
++++ +|.+|+++++|.||||++||+.|+
T Consensus 196 ~~~~-~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 196 VKRG-RLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HhcC-cEEEEecCCeEEecCCHHHHHhhC
Confidence 9855 999999999999999999999883
No 29
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.8e-34 Score=264.99 Aligned_cols=220 Identities=25% Similarity=0.454 Sum_probs=179.9
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
+||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..+.+.+|+.+...+++ . +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~~~------~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKFGV------N-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccccCc------c-E
Confidence 69999999999999999999999999997 99999999999999999999999999999999876432211 0 2
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.++ .+ . ...||++++..+.... .++|+|++||++++.++..+++.|+++++++++++.+... ...||
T Consensus 73 ~~~--~~--~---~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g 139 (220)
T cd06426 73 SYV--RE--D---KPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYG 139 (220)
T ss_pred EEE--EC--C---CCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcce
Confidence 221 11 1 1379999997665433 5789999999999999999999999999999988877432 46789
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHh
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~l 331 (372)
++.+|+ |+|++|.|||... .++++|+|+|+++++.. ++. +......++++.+
T Consensus 140 ~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~-i~~---~~~~~l~~~~~~~ 191 (220)
T cd06426 140 VVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDL-IPK---NEFFDMPDLIEKL 191 (220)
T ss_pred EEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhh-cCC---CCCcCHHHHHHHH
Confidence 999985 8999999987542 37799999999998864 331 2112257999999
Q ss_pred hhCCCcEEEEEEcCeEeeCCCHHHHHHHH
Q 017422 332 TSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (372)
Q Consensus 332 i~~g~~V~a~~~~g~w~DIgT~ed~~~An 360 (372)
++++.+|.+|+++|+|+||||++||.+||
T Consensus 192 i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 192 IKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 98788899999999999999999999985
No 30
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=2.2e-34 Score=262.93 Aligned_cols=217 Identities=29% Similarity=0.535 Sum_probs=182.3
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+...+.++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~-------~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKFGV-------NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhcCc-------eE
Confidence 69999999999999999999999999997 99999999999999999999999999999999876432221 13
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.+. .+ .. ..|+++++++++..+ ..++|+|++||++++.++.++++.|.++++++++++.+.+ ....||
T Consensus 73 ~~~--~~--~~---~~g~~~al~~~~~~~---~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 140 (217)
T cd04181 73 EYV--VQ--EE---PLGTAGAVRNAEDFL---GDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYG 140 (217)
T ss_pred EEE--eC--CC---CCccHHHHHHhhhhc---CCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcce
Confidence 222 11 11 379999999999877 3578999999999999999999999999999999998865 467899
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHh
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 331 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~l 331 (372)
.+.+|++|+|++|.|||.... ...+++|+|+|++++++ +++....+...+..++++.+
T Consensus 141 ~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l 198 (217)
T cd04181 141 VVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLL 198 (217)
T ss_pred EEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHH
Confidence 999998899999999986532 25889999999999884 66654333345678999999
Q ss_pred hhCCCcEEEEEEcCeEeeCC
Q 017422 332 TSIGMRVQAYLYDGYWEDIG 351 (372)
Q Consensus 332 i~~g~~V~a~~~~g~w~DIg 351 (372)
+++ .+|++|+++|+|.|||
T Consensus 199 ~~~-~~v~~~~~~g~w~dig 217 (217)
T cd04181 199 IEE-GKVYGYPVDGYWLDIG 217 (217)
T ss_pred Hhc-CCEEEEEcCCEEecCC
Confidence 994 7999999999999997
No 31
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.5e-34 Score=263.79 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=205.3
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--cCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG 164 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l~~ 164 (372)
++..||||+|||.||||.|.|+..||.|+||.++ |+|+|+++.+..+||++|++||+.+...|.+|+...|..+ +..
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3558999999999999999999999999999986 9999999999999999999999999999999998755221 100
Q ss_pred CCC----------CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcc---cHHHHHHHHHHc
Q 017422 165 YKN----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM---DYERFIQAHRET 231 (372)
Q Consensus 165 ~~~----------~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~---dl~~ll~~h~~~ 231 (372)
..+ ...+.+....|. + +.|.++||.||..++ ++++|.|+.||.++.. .+.+|++.+.+.
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~--e---~~GLGhAVl~A~~~v---g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~ 152 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK--E---PLGLGHAVLCAKPFV---GDEPFAVLLPDDLVDSEKPCLKQMIELYEET 152 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC--C---CCcchhHHHhhhhhc---CCCceEEEeCCeeecCCchHHHHHHHHHHHh
Confidence 000 111334433342 2 489999999999998 4689999999998874 389999999999
Q ss_pred CCCEEEEEEecCCCCCcceeEEE----ECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeH
Q 017422 232 DADITVAALPMDEKRATAFGLMK----IDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISK 306 (372)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~----id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~ 306 (372)
+.. ++++.+++.+..+.||++. ++.+ .+|+.+.|||....+ .|+++.+|-|+|++
T Consensus 153 g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GRYil~p 212 (291)
T COG1210 153 GGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGRYVLTP 212 (291)
T ss_pred CCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------CcceeeeeeeecCH
Confidence 887 5788888877789999997 4443 599999999987643 26899999999999
Q ss_pred HHHHHHHhhhCCCCCC-h-hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 307 DVMLNLLRDKFPGAND-F-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 307 ~~l~~ll~~~~~~~~~-~-~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
++|. +|++..++... + ++|.|..+++ ...|.+|.+.|..+|+|+...|.+|+..+..+.
T Consensus 213 ~IFd-~L~~~~~G~ggEiQLTDai~~L~~-~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 213 EIFD-ILEETKPGAGGEIQLTDAIKKLLK-KEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred HHHH-HHhhCCCCCCCEeeHHHHHHHHHh-hCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 9997 67776565433 2 5899999999 589999999999999999999999999888765
No 32
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=4.7e-32 Score=251.06 Aligned_cols=223 Identities=22% Similarity=0.265 Sum_probs=170.5
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
.||||||.||||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|++++.. ....++...+.... .+ +
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~---~~---~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLA---PN---A 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhC---CC---C
Confidence 48999999999999999999999999997 99999999999999999999997432 22233332221100 01 2
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.++..+. . ..||++++.+++..+. ..++|+|++||++++.++.+++..|.+.+.++++++... ....||
T Consensus 73 ~i~~~~~---~---~~g~~~~l~~a~~~l~--~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 141 (231)
T cd04183 73 TVVELDG---E---TLGAACTVLLAADLID--NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWS 141 (231)
T ss_pred EEEEeCC---C---CCcHHHHHHHHHhhcC--CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeE
Confidence 2322211 1 3899999999998773 246899999999999999999998888777877766654 245799
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHH-HHHHHHhhhC----CCCCC-hhh
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRDKF----PGAND-FGS 325 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~-~l~~ll~~~~----~~~~~-~~~ 325 (372)
.+.+|++|+|+.|.||+.. +..+++|+|+|+++ .|.++++... ..... +..
T Consensus 142 ~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 198 (231)
T cd04183 142 YVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYIS 198 (231)
T ss_pred EEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEh
Confidence 9999999999999887432 23679999999987 5655665421 11122 357
Q ss_pred hhHHHhhhCCCcEEEEEE-cCeEeeCCCHHHH
Q 017422 326 EVIPGATSIGMRVQAYLY-DGYWEDIGTIEAF 356 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~-~g~w~DIgT~ed~ 356 (372)
++++.++++|.+|.+|.+ +++|.||||++||
T Consensus 199 d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 199 PLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred HHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 999999987888999999 6899999999997
No 33
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=100.00 E-value=6e-32 Score=250.20 Aligned_cols=223 Identities=18% Similarity=0.259 Sum_probs=171.8
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++|+|+++++.+.+.+|+... . + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~--~--------~-~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY--P--------N-I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc--C--------C-e
Confidence 69999999999999999999999999997 999999999999999999999999999999998652 1 1 3
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.++...+ .. ..|+++++.+++.++ .++|+|++||++++. ++++.|.++++++++++.+..+.....++
T Consensus 69 ~~~~~~~--~~---~~g~~~s~~~~~~~~----~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (229)
T cd02523 69 KFVYNPD--YA---ETNNIYSLYLARDFL----DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYV 136 (229)
T ss_pred EEEeCcc--hh---hhCcHHHHHHHHHHc----CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccce
Confidence 3432111 01 379999999998877 368999999999875 56677778888999888874433344565
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhh---hCC--CCCChhhh
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD---KFP--GANDFGSE 326 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~---~~~--~~~~~~~d 326 (372)
....| +++|..+.+|+..... ...+++|+|+|+++++..+.+. ..+ ....+.++
T Consensus 137 ~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 195 (229)
T cd02523 137 KDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYED 195 (229)
T ss_pred eeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHH
Confidence 44333 3789999998754321 2478999999999987755332 111 23456789
Q ss_pred hHHHhhh-CCCcEEEEEEcCeEeeCCCHHHHHHHH
Q 017422 327 VIPGATS-IGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (372)
Q Consensus 327 vi~~li~-~g~~V~a~~~~g~w~DIgT~ed~~~An 360 (372)
+++.+++ .+.++.++.. ++|.||||++||++|+
T Consensus 196 ~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 196 ALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred HHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 9999998 3445555555 8999999999999874
No 34
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=100.00 E-value=1.2e-31 Score=243.62 Aligned_cols=199 Identities=48% Similarity=0.821 Sum_probs=162.0
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.||||+|+|..+||+|+||+|++|||+|+++++..+|+++|+|++++..+++.+|+.+...|++.. ....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDR--KNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCC--CCCCE
Confidence 6999999999999999999999999999669999999999999999999999999999999998755443210 11114
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCccee
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFG 251 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g 251 (372)
.++...+. .+++|..||+++|++++.++++...++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~-~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 79 FILPPQQR-KGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEeCcccC-CCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 44432221 134567999999999999886533578999999999999999999999999888887664
Q ss_pred EEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC-CCCChhhhhHHH
Q 017422 252 LMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-GANDFGSEVIPG 330 (372)
Q Consensus 252 ~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~-~~~~~~~dvi~~ 330 (372)
. ++|+|+|++++|.++++.... +..++.+|+++.
T Consensus 147 ---------------------~------------------------~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~ 181 (200)
T cd02508 147 ---------------------A------------------------SMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPA 181 (200)
T ss_pred ---------------------h------------------------cCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 1 679999999998777765422 234567899999
Q ss_pred hhhCCCcEEEEEEcCeEeeC
Q 017422 331 ATSIGMRVQAYLYDGYWEDI 350 (372)
Q Consensus 331 li~~g~~V~a~~~~g~w~DI 350 (372)
++++ .+|.+|.++|+|.||
T Consensus 182 l~~~-~~v~~~~~~g~w~di 200 (200)
T cd02508 182 MLKK-LKIYAYEFNGYWADI 200 (200)
T ss_pred Hhcc-CcEEEEEeCCeEecC
Confidence 9995 799999999999997
No 35
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=264.87 Aligned_cols=237 Identities=19% Similarity=0.274 Sum_probs=189.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|.+++|||||||.|+||++ .+||||+|++|+ |||+|+|+++.++|+++|++++++..+++.+|+.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 4568999999999999974 689999999997 9999999999999999999999999999998886521
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.+.++. + . +..||+++++++++++++ ..++|||++||+ +...++.++++.|.+.++++++...+.++
T Consensus 69 ---~i~~~~--~--~---~~~Gt~~al~~a~~~l~~-~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~ 137 (459)
T PRK14355 69 ---DVSFAL--Q--E---EQLGTGHAVACAAPALDG-FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLEN 137 (459)
T ss_pred ---ceEEEe--c--C---CCCCHHHHHHHHHHHhhc-cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 133321 1 1 137999999999998863 246899999998 33567999999998888888888877644
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CC
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~ 321 (372)
...||.+.+|++|+|.+|.|||.....+ ...+++++|+|+|++++|.++++...+. ..
T Consensus 138 --~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e 198 (459)
T PRK14355 138 --PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGE 198 (459)
T ss_pred --CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCc
Confidence 3578999899899999999987432110 0135889999999999876666654331 22
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhccC
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l~~ 365 (372)
.+.+|+++.++++|.+|.+|+++++ |+||||+++|++|++.+..
T Consensus 199 ~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~ 244 (459)
T PRK14355 199 YYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRR 244 (459)
T ss_pred eeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHH
Confidence 3468999999998889999999987 9999999999999876553
No 36
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.7e-29 Score=258.69 Aligned_cols=229 Identities=20% Similarity=0.240 Sum_probs=183.5
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
..+.|||||||.||||++ .+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+.+++....
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~--------- 69 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA--------- 69 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---------
Confidence 457899999999999986 589999999997 9999999999999999999999999888888876421
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
.. +.++. + ++..||++++++++.++.+..+++|||++||+ ++ ..++.++++.|++.+++++++..+.++
T Consensus 70 ~~-~~~~~--~-----~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~- 140 (482)
T PRK14352 70 PE-VDIAV--Q-----DEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDD- 140 (482)
T ss_pred Cc-cEEEe--C-----CCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCC-
Confidence 01 22221 1 23489999999999888543356799999998 44 456999999999888888887777654
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~ 322 (372)
...||.+..|++|+|.+|.|||.....+. ....+++|+|+|++++|.++++...+. ...
T Consensus 141 -p~~yg~~~~~~~g~V~~~~EKp~~~~~~~-----------------~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~ 202 (482)
T PRK14352 141 -PTGYGRILRDQDGEVTAIVEQKDATPSQR-----------------AIREVNSGVYAFDAAVLRSALARLSSDNAQGEL 202 (482)
T ss_pred -CCCCCEEEECCCCCEEEEEECCCCCHHHh-----------------hcceEEEEEEEEEHHHHHHHHHhhCccccCCcE
Confidence 56799888888999999999987532210 124689999999999997777654432 223
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHH
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAF 356 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~ 356 (372)
+++|+++.++++|.+|++|+++++|.|+|++++|
T Consensus 203 ~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~ 236 (482)
T PRK14352 203 YLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRV 236 (482)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHH
Confidence 4689999999988899999999999999999887
No 37
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.97 E-value=1.8e-29 Score=240.67 Aligned_cols=234 Identities=23% Similarity=0.325 Sum_probs=173.2
Q ss_pred eEEEEEeCCCCCCCCCCcc-CCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChhh-HHHHHHHhhhcccCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSAS-LNRHLSRAYASNMGGYK 166 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~-~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~~-i~~~l~~~~~~~l~~~~ 166 (372)
|++||||||.||||+|+|. .+||+|+|++|++|||+++++++.+. ++++|+|+++++... +.+++.. .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~-------- 71 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G-------- 71 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--------
Confidence 6899999999999999996 79999999999559999999999998 599999999976543 4444433 0
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc-CCceEEEEcCCccCc--ccHHHHHHHHHH---cCCCEEEEEE
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYR--MDYERFIQAHRE---TDADITVAAL 240 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~-~~~~~Lvl~gD~l~~--~dl~~ll~~h~~---~~aditi~~~ 240 (372)
... +.++. +|+ ..||++++..+...+.+. +++.+||++||+++. .++.++++.+.+ .++.+|+.+.
T Consensus 72 ~~~-~~ii~---ep~----~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~ 143 (274)
T cd02509 72 LPE-ENIIL---EPE----GRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIK 143 (274)
T ss_pred CCC-ceEEE---CCC----CCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 001 23332 122 279999999998888642 456899999999886 457777765543 6778888888
Q ss_pred ecCCCCCcceeEEEECCCC-----ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhh
Q 017422 241 PMDEKRATAFGLMKIDEEG-----RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 241 ~~~~~~~~~~g~v~id~~g-----~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
+.. +.+.||+++.|+++ +|.+|.|||+...++.+. ..+.+++++|+|+|+++.|.+.+++
T Consensus 144 p~~--~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~l~~ 208 (274)
T cd02509 144 PTR--PETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEELKK 208 (274)
T ss_pred ecC--CCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHHHHH
Confidence 853 46899999998663 899999999876543221 2245799999999999988777776
Q ss_pred hCCCCC----------------ChhhhhHHH---------hhhCCCcEEEEEEcCeEeeCCCHHH
Q 017422 316 KFPGAN----------------DFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEA 355 (372)
Q Consensus 316 ~~~~~~----------------~~~~dvi~~---------li~~g~~V~a~~~~g~w~DIgT~ed 355 (372)
..|.-. .+..+.++. ++++..++.+++.+..|-|+|+.++
T Consensus 209 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 209 HAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 544210 111233433 4555678999999999999999764
No 38
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=8.6e-30 Score=234.50 Aligned_cols=205 Identities=19% Similarity=0.310 Sum_probs=153.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
++|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++||++|+|+++++.+++.+|+.+++.|+... ...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~--~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKS--SLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccccc--Ccc
Confidence 4799999999999999999999999999997 9999999999999999999999999999999999866554321 001
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHH--HHHHhcCCceEEEEcCCccCcccHHHHHHHHHHc-----CCCEEEEEEec
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYL--WLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALPM 242 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~--~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~~ 242 (372)
.+.++. + .+ ..|++++++... ..+ .++|||++||++++.|+.++++.|+++ ++++|+++.++
T Consensus 78 ~i~~~~--~--~~---~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~ 146 (217)
T cd04197 78 IVIIIM--S--ED---CRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEA 146 (217)
T ss_pred eEEEEe--C--CC---cCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeC
Confidence 133221 1 11 368888886542 222 467999999999999999999999984 88899988887
Q ss_pred CCCC----CcceeEEEECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHH
Q 017422 243 DEKR----ATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (372)
Q Consensus 243 ~~~~----~~~~g~v~id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l 309 (372)
+++. ...++++.+|++ ++|+.|.|||..+......+.+.++.-.+.. .-..++.++|+|+|++++|
T Consensus 147 ~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 147 SPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 6543 223678888876 8999999998865432222333333221111 1125688999999998764
No 39
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.96 E-value=5.3e-28 Score=223.14 Aligned_cols=222 Identities=23% Similarity=0.345 Sum_probs=175.0
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
|||||||.|+||++ .+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+.+.+++.. + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~----------~-~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P----------N-V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C----------C-c
Confidence 69999999999986 589999999997 99999999999999999999999998888877654 1 1 2
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-C-cccHHHHHHHHHHcCCCEEEEEEecCCCCCcc
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-Y-RMDYERFIQAHRETDADITVAALPMDEKRATA 249 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~ 249 (372)
+++. + .. ..|+++++++++..+.+ ..++|++++||+. + ..++.++++.|.+.++++++.+.+.++ ...
T Consensus 65 ~~~~--~--~~---~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~--p~~ 134 (229)
T cd02540 65 EFVL--Q--EE---QLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED--PTG 134 (229)
T ss_pred EEEE--C--CC---CCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC--CCC
Confidence 3322 1 11 27999999999988853 2478999999993 3 466999999998888888887777653 467
Q ss_pred eeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCChhhh
Q 017422 250 FGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFGSE 326 (372)
Q Consensus 250 ~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~~~d 326 (372)
||.+..|++|+|+.+.||+.....+. ..+.+++|+|+|+++.|.++++.... +...++++
T Consensus 135 ~~~~~~~~~~~v~~~~ek~~~~~~~~-----------------~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 135 YGRIIRDGNGKVLRIVEEKDATEEEK-----------------AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ccEEEEcCCCCEEEEEECCCCChHHH-----------------hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 88888888899999999875321110 12578999999999877777765432 12345789
Q ss_pred hHHHhhhCCCcEEEEEEcCe--EeeCCCHHHH
Q 017422 327 VIPGATSIGMRVQAYLYDGY--WEDIGTIEAF 356 (372)
Q Consensus 327 vi~~li~~g~~V~a~~~~g~--w~DIgT~ed~ 356 (372)
+++.+++.|.+|++|.++|| |+.|+||.++
T Consensus 198 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 198 IIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 99999988889999999875 8889999874
No 40
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=2.5e-28 Score=250.07 Aligned_cols=231 Identities=21% Similarity=0.250 Sum_probs=181.5
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++|+|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++|+|+++++.+.+.+|+...
T Consensus 6 ~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---------- 71 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQGS---------- 71 (481)
T ss_pred CCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhccC----------
Confidence 569999999999999986 489999999997 999999999999999999999999999888887530
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
+ +.++. + ++..||+++++.++.++.. ..++|+|++||+ +...++.++++.|+++++++|+++.++++
T Consensus 72 -~-i~~v~--~-----~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~- 140 (481)
T PRK14358 72 -G-VAFAR--Q-----EQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPD- 140 (481)
T ss_pred -C-cEEec--C-----CCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCC-
Confidence 1 33332 1 1348999999999988753 235699999998 33566999999999999999988887764
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~ 322 (372)
...||.+.+|++|+|.+|.|||.....+ ...+.+++|+|+|+++++ ++++...+ ....
T Consensus 141 -~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~-~~~~~i~~~~~~ge~ 201 (481)
T PRK14358 141 -ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAP-ELARRIGNDNKAGEY 201 (481)
T ss_pred -CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHH-HHHHhcCCCccCCeE
Confidence 4579999999999999999998743210 012468999999997653 23333221 1123
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHh
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~ 362 (372)
+++|+++.+++++.++.+|.+.++|..++...+|+.+++.
T Consensus 202 ~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~ 241 (481)
T PRK14358 202 YLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLE 241 (481)
T ss_pred EHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHH
Confidence 4689999999978899999999998888888777666654
No 41
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-29 Score=229.09 Aligned_cols=242 Identities=22% Similarity=0.359 Sum_probs=201.3
Q ss_pred CceEEEEEeCC--CCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhHHHHHHHhhhcccCC
Q 017422 88 RSVLGIILGGG--AGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (372)
Q Consensus 88 ~~m~aIILAaG--~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~ 164 (372)
++++||||-|| +||||+||+-+.||||+||+|. |||+|.|+.|.+ .|..+|+++.-|..+.+.+++......
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e---- 75 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQE---- 75 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhh----
Confidence 45899999999 6999999999999999999997 999999999998 789999999999999999998874321
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
++ -+|..+. + .+ +.||+++|+..++.+-+...+.|+|+++|.-++..+++|++.|+..+...|+++..+..
T Consensus 76 -~~-~pvrYL~---E-~~---plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~ 146 (407)
T KOG1460|consen 76 -FK-VPVRYLR---E-DN---PLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSR 146 (407)
T ss_pred -cc-cchhhhc---c-CC---CCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecH
Confidence 11 1133221 1 12 49999999999988877667889999999999999999999999999999999999988
Q ss_pred CCCcceeEEEEC-CCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHh---hh----
Q 017422 245 KRATAFGLMKID-EEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR---DK---- 316 (372)
Q Consensus 245 ~~~~~~g~v~id-~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~---~~---- 316 (372)
+.++.||.+..| ..|+|.++.|||..-- ++.++.|+|+|++++|..+-+ +.
T Consensus 147 e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~ 205 (407)
T KOG1460|consen 147 EQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQRQDLL 205 (407)
T ss_pred hHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHHHHhhh
Confidence 889999999888 4699999999998753 468899999999998874321 10
Q ss_pred ---------CCCCCCh---hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 317 ---------FPGANDF---GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 317 ---------~~~~~~~---~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
.++..+| ..|++..|.. .+.+++|..++.|..|.|+..-..|+...+.
T Consensus 206 ~~~~~~~~l~~g~~d~irLeqDvlspLag-~k~lY~y~t~~fW~QiKtagsal~as~lYLs 265 (407)
T KOG1460|consen 206 EVEKDLPLLQPGPADFIRLEQDVLSPLAG-SKQLYAYETTDFWSQIKTAGSALYASRLYLS 265 (407)
T ss_pred hhhhcccccCCCccceEEeechhhhhhcC-CCceEEEecccHHHHhccccceeehhhhHHH
Confidence 1222344 3789999998 6799999999999999999988888877665
No 42
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=2.5e-27 Score=240.93 Aligned_cols=235 Identities=16% Similarity=0.191 Sum_probs=182.0
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
.+.|||||||.||||+ ..+||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++... .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~---------~- 70 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE---------D- 70 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc---------C-
Confidence 4889999999999996 4689999999997 999999999999999999999999988887765431 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
+.++. + + +..||+++++++++++++...++|++++||+ ++. .++..+++.|. ++++++...++++
T Consensus 71 --~~~v~--~--~---~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~-- 137 (456)
T PRK14356 71 --ARFVL--Q--E---QQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPD-- 137 (456)
T ss_pred --ceEEE--c--C---CCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCC--
Confidence 22322 1 1 1379999999999988654457899999999 444 55899998875 6678888877654
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCCh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDF 323 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~ 323 (372)
...||.+.. ++|+|.+|.|||+...... ...+.++++|+|+|+++++..+++.... ....+
T Consensus 138 ~~~~g~v~~-~~g~V~~~~ek~~~~~~~~---------------~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ 201 (456)
T PRK14356 138 PGAYGRVVR-RNGHVAAIVEAKDYDEALH---------------GPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYY 201 (456)
T ss_pred CCCceEEEE-cCCeEEEEEECCCCChHHh---------------hhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEE
Confidence 467898876 5799999999886421100 0013578999999999988766654322 22234
Q ss_pred hhhhHHHhhhCCCcEEEEEEcC--eEeeCCCHHHHHHHHHhccCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g--~w~DIgT~ed~~~An~~l~~~ 366 (372)
++++++.+++.|.++.++.+.+ .|+||+||+||.+|+..+..+
T Consensus 202 ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~ 246 (456)
T PRK14356 202 ITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRAR 246 (456)
T ss_pred HHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHH
Confidence 6899999988788999999976 579999999999998877643
No 43
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=1.1e-27 Score=243.64 Aligned_cols=228 Identities=18% Similarity=0.267 Sum_probs=177.3
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|++||||||.|+||++ .+||||+|++|+ |||+|+++.+.++|+++|+|+++++.+.+.+++...
T Consensus 3 ~~~~~aiIlAaG~gtRl~~---~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------- 69 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYS---DLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------- 69 (456)
T ss_pred CCCceEEEEcCCCCCcCCC---CCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC---------
Confidence 4569999999999999983 689999999997 999999999999999999999999988888887541
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
. +.++. + + +..||+++++.++.++. ..++|||++||+ +...++.++++.|.+.+ +++.+.+.++
T Consensus 70 --~-~~~i~--~-~----~~~Gt~~al~~a~~~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~ 135 (456)
T PRK09451 70 --P-LNWVL--Q-A----EQLGTGHAMQQAAPFFA--DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDN 135 (456)
T ss_pred --C-cEEEE--C-C----CCCCcHHHHHHHHHhhc--cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCC
Confidence 0 22221 1 1 13799999999998874 246899999998 44567999998886544 4555655543
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CC
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~ 321 (372)
...||++. +++|+|++|.|||.....+ ....++++|+|+|+++.|.++++...+. ..
T Consensus 136 --~~~yG~v~-~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e 195 (456)
T PRK09451 136 --PTGYGRIT-RENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGE 195 (456)
T ss_pred --CCCceEEE-ecCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCc
Confidence 46799875 4578999999998642210 0124789999999999988777654331 23
Q ss_pred ChhhhhHHHhhhCCCcEEEEE------EcCe--EeeCCCHHHHHHHHH
Q 017422 322 DFGSEVIPGATSIGMRVQAYL------YDGY--WEDIGTIEAFYNANL 361 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~------~~g~--w~DIgT~ed~~~An~ 361 (372)
.++.|+|+.++++|.+|.+|. +.|+ |.|++++++|+++|.
T Consensus 196 ~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~ 243 (456)
T PRK09451 196 YYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQ 243 (456)
T ss_pred eeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 456899999999888999996 5676 889999999999974
No 44
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=4.3e-27 Score=237.22 Aligned_cols=231 Identities=16% Similarity=0.222 Sum_probs=174.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|.++|||||||.||||++ .+||||+||+|+ |||+|+|+.+..+ +++|+|+++++.+.+.+|+.+.+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~~-------- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYFP-------- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcCC--------
Confidence 458899999999999987 699999999997 9999999999987 799999999999999999876211
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+ +.++... .....||+++++++. . ..++||+++||..+.. .+.++.+.+.++++++++.++++ .
T Consensus 68 -~-v~~~~~~-----~~~~~gt~~al~~~~----~-~~d~vlv~~gD~p~~~--~~~l~~l~~~~~~~~v~~~~~~~--~ 131 (430)
T PRK14359 68 -G-VIFHTQD-----LENYPGTGGALMGIE----P-KHERVLILNGDMPLVE--KDELEKLLENDADIVMSVFHLAD--P 131 (430)
T ss_pred -c-eEEEEec-----CccCCCcHHHHhhcc----c-CCCeEEEEECCccCCC--HHHHHHHHhCCCCEEEEEEEcCC--C
Confidence 1 4444321 111379999998632 1 2478999999984421 23444455667888888877654 4
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCChh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GANDFG 324 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~~~ 324 (372)
..||.+..| +|+|+.|.|++..... ....+.+++|+|+|++++|.++++.... ....++
T Consensus 132 ~~~g~v~~d-~g~v~~i~e~~~~~~~-----------------~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l 193 (430)
T PRK14359 132 KGYGRVVIE-NGQVKKIVEQKDANEE-----------------ELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYL 193 (430)
T ss_pred ccCcEEEEc-CCeEEEEEECCCCCcc-----------------cccceEEEeEEEEEEHHHHHHHHHhcCcccccCceeh
Confidence 568887775 6899999998754211 0013578999999999999876654321 122346
Q ss_pred hhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHhccC
Q 017422 325 SEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~~ 365 (372)
+|+++.+++.|.++.++.++ ++|.||+|++||+.|+..+..
T Consensus 194 ~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~ 235 (430)
T PRK14359 194 TDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQE 235 (430)
T ss_pred hhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHH
Confidence 89999999888999999997 589999999999999876653
No 45
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.96 E-value=3.9e-27 Score=238.72 Aligned_cols=229 Identities=22% Similarity=0.273 Sum_probs=180.0
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|+|||||||.|+||++ .+||+|+||+|+ |||+|+++++.++|+++|+|++++..+.+.+++.+. +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~---~-------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR---D-------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC---C--------
Confidence 7899999999999997 689999999997 999999999999999999999999999888887641 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.++. + ++ ..|+++++++++.++++ .++|++++||+ ++ ..++.++++.|.+. .+++++.+.+ ..
T Consensus 66 -i~~~~--~-~~----~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~--~~ 131 (451)
T TIGR01173 66 -VNWVL--Q-AE----QLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLP--DP 131 (451)
T ss_pred -cEEEE--c-CC----CCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecC--CC
Confidence 22221 1 11 26999999999988852 36899999998 44 45699999988764 4666776654 34
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~~~ 324 (372)
..|+.+..|++|+|..|.|||.....+. ..+.+++|+|+|++++|.++++..... ...+.
T Consensus 132 ~~~g~v~~d~~g~v~~~~ek~~~~~~~~-----------------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~ 194 (451)
T TIGR01173 132 TGYGRIIRENDGKVTAIVEDKDANAEQK-----------------AIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYL 194 (451)
T ss_pred CCCCEEEEcCCCCEEEEEEcCCCChHHh-----------------cCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeH
Confidence 5689888988899999999876432110 125789999999999976666654321 12346
Q ss_pred hhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhcc
Q 017422 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l~ 364 (372)
.++++.++++|.++.+|+++++ |++++|+++|.+++..+.
T Consensus 195 ~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~ 236 (451)
T TIGR01173 195 TDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQ 236 (451)
T ss_pred HHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHH
Confidence 8999999987889999999987 999999999998876554
No 46
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=7.8e-27 Score=237.27 Aligned_cols=232 Identities=21% Similarity=0.256 Sum_probs=181.6
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|+++|||||||.|+||++ .+||||+||+|+ |||+|+|+++.++|+++++|++++..+++.+|+...
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 468999999999999974 689999999997 999999999999999999999999999888876531
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
+.++. + . +..|+++++++++.++++ ..+.|++++||. ++ ..++.++++.|.+.++++++++.+.++
T Consensus 67 ---~~~~~--~--~---~~~g~~~al~~a~~~l~~-~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~- 134 (458)
T PRK14354 67 ---SEFAL--Q--E---EQLGTGHAVMQAEEFLAD-KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAEN- 134 (458)
T ss_pred ---cEEEE--c--C---CCCCHHHHHHHHHHHhcc-cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCC-
Confidence 11221 1 1 137999999999988853 236799999997 34 466999999998888888888877643
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~ 322 (372)
...|+.+..|++|+|+.|.|||...... ...+.+++|+|+|+++.|.+.+++.... ...
T Consensus 135 -~~~~g~v~~d~~~~V~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 135 -PTGYGRIIRNENGEVEKIVEQKDATEEE-----------------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCChHH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 4568888888889999999987532110 0135889999999998766666554321 122
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhc
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGI 363 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l 363 (372)
+..++++.+++.+.++++|.++|+ |++++|++||..|+..+
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll 239 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVM 239 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHH
Confidence 357999999987889999999975 67888999999987654
No 47
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.95 E-value=8.2e-27 Score=236.47 Aligned_cols=234 Identities=19% Similarity=0.237 Sum_probs=179.7
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|+.+.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+++....
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~-------- 70 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA-------- 70 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC--------
Confidence 4668999999999999974 589999999997 9999999999999999999999999998888875411
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.. +.++. + . +..|++++++.++.+++. ..++|++++||+ ++. .++..+++ +.+.++++++.+.+..+
T Consensus 71 -~~-~~~~~--~--~---~~~G~~~sl~~a~~~l~~-~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~~~~~~ 139 (446)
T PRK14353 71 -PD-AEIFV--Q--K---ERLGTAHAVLAAREALAG-GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLGFRAAD 139 (446)
T ss_pred -CC-ceEEE--c--C---CCCCcHHHHHHHHHHHhc-cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEEEEeCC
Confidence 01 22221 1 1 137999999999988753 246799999998 555 45888887 44567788887777543
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCC
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAN 321 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~ 321 (372)
...||.+.. ++|+|+++.|||...... .....+++|+|+|+++.|.+++++... ...
T Consensus 140 --~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 199 (446)
T PRK14353 140 --PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE 199 (446)
T ss_pred --CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence 467888877 578999999998643210 012478999999999887667665432 122
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhc
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l 363 (372)
.+++++++.+++.|.++.++++++ +|.||+||+||..|+..+
T Consensus 200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~ 242 (446)
T PRK14353 200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVW 242 (446)
T ss_pred EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHH
Confidence 346899999998888999999974 699999999999998644
No 48
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=2.8e-26 Score=222.80 Aligned_cols=237 Identities=22% Similarity=0.277 Sum_probs=194.2
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
+++.+||||||.||||.. +.||-|.||+|+ ||++|+|+.+...+.+++++|+++..+.+...+.+.. .
T Consensus 1 ~~~~~vILAAGkGTRMkS---~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~--------~ 68 (460)
T COG1207 1 MSLSAVILAAGKGTRMKS---DLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD--------D 68 (460)
T ss_pred CCceEEEEecCCCccccC---CCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc--------C
Confidence 357899999999999974 689999999997 9999999999999999999999999999998887521 0
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
++++ .| ++ ++||++|+.+++++|.+..+.++||++||+ |...+ ++.|++.|.+.++.+++++...++
T Consensus 69 ---v~~v--~Q--~e---qlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~d- 137 (460)
T COG1207 69 ---VEFV--LQ--EE---QLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDD- 137 (460)
T ss_pred ---ceEE--Ee--cc---cCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCC-
Confidence 2222 13 22 399999999999999554556899999999 66655 888999999999999999988766
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~ 322 (372)
++.||.+..+++|.|..|.|..+....+ ..-..+++|+|+|+...|.+.|.+...+ ..-
T Consensus 138 -P~GYGRIvr~~~g~V~~IVE~KDA~~ee-----------------k~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 138 -PTGYGRIVRDGNGEVTAIVEEKDASEEE-----------------KQIKEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred -CCCcceEEEcCCCcEEEEEEcCCCCHHH-----------------hcCcEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 6899999999999999999977654332 1235889999999999888888765431 223
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhccC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l~~ 365 (372)
|++|++..+...|.+|.++..+++ ...|++-..+.+++..+..
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~ 244 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQR 244 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHH
Confidence 579999999988999999999875 7788888888888876654
No 49
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.95 E-value=1.6e-26 Score=235.56 Aligned_cols=240 Identities=20% Similarity=0.315 Sum_probs=172.3
Q ss_pred eEEEEEeCCCCCCCCCCccC-CCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChh-hHHHHHHHhhhcccCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSA-SLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~-~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~~~ 167 (372)
|.+||||||.||||+|+|.. +||+|+|+.|.+|||+++++.+...++++++|+++.... .+.+.+.. + +
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~-~----~---- 71 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE-I----G---- 71 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH-c----C----
Confidence 67999999999999999996 899999997745999999999999999999999975443 23333332 1 0
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc--CCceEEEEcCCccCcc--cHHHHHHHH---HHcCCCEEEEEE
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLYRM--DYERFIQAH---RETDADITVAAL 240 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~--~~~~~Lvl~gD~l~~~--dl~~ll~~h---~~~~aditi~~~ 240 (372)
.....++. +|. .+|||+++..+..++.+. .++.++|++||+++.. ++.++++.+ .+.++.+|+.+.
T Consensus 72 ~~~~~~i~---Ep~----~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 72 KLASNIIL---EPV----GRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred CCcceEEe---ccc----ccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 00011221 122 379999998877666432 3445899999987753 488887765 344556677776
Q ss_pred ecCCCCCcceeEEEECC------CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHh
Q 017422 241 PMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (372)
Q Consensus 241 ~~~~~~~~~~g~v~id~------~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~ 314 (372)
+. ++.+.||+++.|+ .++|..|.|||+...++.+. .++.+++++|||+|+++.|.+.+.
T Consensus 145 p~--~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l-------------~~g~~~wNsGif~~~~~~ll~~l~ 209 (468)
T TIGR01479 145 PT--HPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYL-------------ESGDYYWNSGMFLFRASRYLAELK 209 (468)
T ss_pred CC--CCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHH-------------hcCCeEEEeeEEEEEHHHHHHHHH
Confidence 53 3468999999873 26899999999876543221 223579999999999887776666
Q ss_pred hhCCCC-----------------CChhhhhHH---------HhhhCCCcEEEEEEcCeEeeCCCHHHHHHHH
Q 017422 315 DKFPGA-----------------NDFGSEVIP---------GATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (372)
Q Consensus 315 ~~~~~~-----------------~~~~~dvi~---------~li~~g~~V~a~~~~g~w~DIgT~ed~~~An 360 (372)
+..|+- ..+..++++ .++++..+|.+++.+..|.|+|+.++|+++.
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 210 KHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 543310 011135556 4566677899999999999999999999874
No 50
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.94 E-value=1.8e-25 Score=208.83 Aligned_cols=235 Identities=18% Similarity=0.221 Sum_probs=163.1
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+..+|+++|+|+++ .+.+.+++.. +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~--------- 61 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-F--------- 61 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-c---------
Confidence 35789999999999993 6999999997 99999999999999999999885 3566666643 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecCC-
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE- 244 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~- 244 (372)
+ +.++...+ .+..|+++.... ...+.....+.+|+++||+ ++. .++.++++.|.++++++++++.+..+
T Consensus 62 -~-~~v~~~~~-----~~~~gt~~~~~~-~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~ 133 (245)
T PRK05450 62 -G-GEVVMTSP-----DHPSGTDRIAEA-AAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDA 133 (245)
T ss_pred -C-CEEEECCC-----cCCCchHHHHHH-HHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCH
Confidence 1 22222111 123677765443 3333211245699999999 555 45899999988777777777666521
Q ss_pred ---CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCC
Q 017422 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (372)
Q Consensus 245 ---~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~ 321 (372)
.....++++ +|++|+|++|.|||..+.... .++. ...++++++|+|+|+++.+..+... .+...
T Consensus 134 ~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~-~~~~~ 200 (245)
T PRK05450 134 EEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FADS-APTPVYRHIGIYAYRRGFLRRFVSL-PPSPL 200 (245)
T ss_pred HHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------cccc-cCccccEEEEEEecCHHHHHHHHhC-CCCcc
Confidence 234567755 889999999999985432100 0000 0124789999999999998866542 22211
Q ss_pred Chh--hhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhc
Q 017422 322 DFG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 322 ~~~--~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l 363 (372)
+.. .+++ .++++|.+|+++.++| +|.|||||+||.+|+..+
T Consensus 201 ~~~~~~~~~-~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 201 EKIESLEQL-RALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred ccchhHHHH-HHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 111 1223 4666689999999996 899999999999999765
No 51
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=1.6e-25 Score=227.14 Aligned_cols=222 Identities=21% Similarity=0.277 Sum_probs=171.9
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|+|||||||.||||++ .+||||+|++|+ |||+|+|+++.+.+ ++|+|++++..+.+.+|+...
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 7899999999999974 689999999997 99999999999974 999999999988888776531
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.++. + .. .+||++++++++.++++ .++|++++||. +...++.++++.|+++++++++++.+.++ .
T Consensus 64 -~~~~~--~--~~---~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~--~ 131 (448)
T PRK14357 64 -VKIFL--Q--EE---QLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLED--P 131 (448)
T ss_pred -cEEEe--c--CC---CCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCC--C
Confidence 22221 1 11 37999999999988852 47899999997 44677999999999999999999888764 5
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC--CC-Chh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG--AN-DFG 324 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~--~~-~~~ 324 (372)
..||.+..| +|+| .+.||+..+... ...+.+++|+|+|++++|.+++++..+. .. .+.
T Consensus 132 ~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~ 192 (448)
T PRK14357 132 TGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYL 192 (448)
T ss_pred CCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEH
Confidence 679998887 7888 788876532210 1125889999999999987776654321 11 234
Q ss_pred hhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhc
Q 017422 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGI 363 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l 363 (372)
.|+++.+ .++.+|.+.++ |.+++|+++|..+...+
T Consensus 193 ~d~i~~~----~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~ 229 (448)
T PRK14357 193 TDAVNFA----EKVRVVKTEDLLEITGVNTRIQLAWLEKQL 229 (448)
T ss_pred HHHHHhh----hheeEEecCCHHHEEccCCHHHHHHHHHHH
Confidence 6888776 25899999998 77778999998876654
No 52
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.94 E-value=4e-25 Score=205.79 Aligned_cols=227 Identities=17% Similarity=0.273 Sum_probs=160.4
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++.+||||+|.|+||. ||+|+|++|+ |||+|+++++..+ |+++|+|++++ +.+.+++.+ +.
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~~-------- 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-FG-------- 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-cC--------
Confidence 3679999999999994 7999999997 9999999999998 99999999864 566666653 11
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHc-CCCEEEEEEecCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE 244 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~ 244 (372)
+.++...+ .+..||++ +..++..+.. ..+.||+++||. ++. .++..+++.|.+. +.++++++.++++
T Consensus 63 ---~~~~~~~~-----~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 132 (239)
T cd02517 63 ---GKVVMTSP-----DHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISD 132 (239)
T ss_pred ---CEEEEcCc-----ccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCC
Confidence 22322111 12368875 5555555531 136799999998 554 5689999988776 7788888877643
Q ss_pred C----CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 245 ~----~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
. ....|+ +..|++|+|+.|.+|+....... .+...+++++|+|+|+++.+..+... ..
T Consensus 133 ~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~~--------------~~~~~~~~~~Giy~~~~~~~~~~~~~-~~-- 194 (239)
T cd02517 133 EEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRDS--------------SEDFPYYKHIGIYAYRRDFLLRFAAL-PP-- 194 (239)
T ss_pred HHHccCCCCCE-EEECCCCCEEEecCCCCCCCCCC--------------CCCCceeEEEEEEEECHHHHHHHHhC-CC--
Confidence 1 123334 55777899999988764321000 00013588999999999999866543 11
Q ss_pred CCh-hhhhHH--HhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHH
Q 017422 321 NDF-GSEVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (372)
Q Consensus 321 ~~~-~~dvi~--~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~ 361 (372)
..+ ..+.+. .++++|.+|.++.++++|.||||++||.+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 195 SPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 112 233333 46776888999999999999999999999985
No 53
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=4.7e-25 Score=223.78 Aligned_cols=229 Identities=20% Similarity=0.265 Sum_probs=178.7
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+.+|+....
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6799999999999985 689999999997 9999999999999999999999999888888875410
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
.+.++. +. +..|+++++++++.++++ ..++++|++||. +...++.++++.|++.++++++...+.++ .
T Consensus 67 ~i~~v~--~~-----~~~G~~~sv~~~~~~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~--~ 136 (450)
T PRK14360 67 GLEFVE--QQ-----PQLGTGHAVQQLLPVLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPN--P 136 (450)
T ss_pred CeEEEE--eC-----CcCCcHHHHHHHHHHhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCC--C
Confidence 133432 11 137999999999988863 245799999998 34567999999999999998887776554 4
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~~~ 324 (372)
..||.+.+|++|+|.+|.|||.....+ ..++++++|+|+|+++.|.+++++..+. ...+.
T Consensus 137 ~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~ 199 (450)
T PRK14360 137 KGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYL 199 (450)
T ss_pred CCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeH
Confidence 569999999999999999998643211 1246889999999999888777655432 22345
Q ss_pred hhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhcc
Q 017422 325 SEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l~ 364 (372)
++.++.+. ++.++.+.++ |..|+|++|+..+...+.
T Consensus 200 td~i~~~~----~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~ 237 (450)
T PRK14360 200 TDTVSLLD----PVMAVEVEDYQEINGINDRKQLAQCEEILQ 237 (450)
T ss_pred HHHHHHHh----hceEEecCCHHHhhcCCCHHHHHHHHHHHH
Confidence 78887774 3677778775 566999999999887653
No 54
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=9.4e-25 Score=198.59 Aligned_cols=222 Identities=20% Similarity=0.319 Sum_probs=151.0
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEe-cCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt-~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
|..|+|||||||.|+||+| ++||+|+.|+|+ +||+|+|++|...|+++++||+ +|+.+.+..++.+ |+.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCc-----
Confidence 4569999999999999999 899999999997 9999999999999999999999 8999988888776 221
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEe-cC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALP-MD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~-~~ 243 (372)
. .+++... .++. .+|+.++..+++.+. +.|++++|||+|... ++.++++ .+...++... ..
T Consensus 71 -~---~~iv~N~-~y~k----tN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~a----~~~~li~d~~~~~ 133 (239)
T COG1213 71 -N---AKIVINS-DYEK----TNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLEA----PGEGLIVDRRPRY 133 (239)
T ss_pred -c---eEEEeCC-Cccc----CCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHhC----cCCcEEEeccccc
Confidence 1 3333221 1222 567999999988875 469999999999966 5555543 2222222222 11
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
. ....-..+ .+++|++.+++++-.. ....++|++.|+.+++....+..... ..+
T Consensus 134 ~-~~~ea~kv-~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~~e~-~~~ 187 (239)
T COG1213 134 V-GVEEATKV-KDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELLVER-SEY 187 (239)
T ss_pred c-ccCceeEE-EecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHHhhh-hhH
Confidence 0 01111123 3578999998776542 12568999999999776544322111 111
Q ss_pred -hhhhHHHhhhCCCcEEEEEEc--C-eEeeCCCHHHHHHHHHhcc
Q 017422 324 -GSEVIPGATSIGMRVQAYLYD--G-YWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 324 -~~dvi~~li~~g~~V~a~~~~--g-~w~DIgT~ed~~~An~~l~ 364 (372)
..++.... +.+..-+.+. | .|+|||||||+.+|+..+.
T Consensus 188 ~~~~~~~~~---~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~ 229 (239)
T COG1213 188 DYREVEKEA---GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLV 229 (239)
T ss_pred HHHHHHHHh---CCceEEeeccccCceeEecCCHHHHHHHHHHHH
Confidence 23333332 3334433332 5 5999999999999998765
No 55
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=7.7e-25 Score=201.64 Aligned_cols=204 Identities=19% Similarity=0.287 Sum_probs=149.3
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
++|||||||.|+||.|+|...||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+...+.+.... . .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~--~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSS--K-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccC--C-c
Confidence 5899999999999999999999999999997 9999999999999999999999999999999998754211000 1 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHH--HHHcCCCEEEEEEecCCCC-
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA--HRETDADITVAALPMDEKR- 246 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~--h~~~~aditi~~~~~~~~~- 246 (372)
.+.+....+ ....||+++++.+++.+ .++|+|++||++++.++.++++. +...++++++++.......
T Consensus 77 ~v~~~~~~~-----~~~~Gta~~l~~~~~~i----~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~ 147 (216)
T cd02507 77 IVDVITSDL-----CESAGDALRLRDIRGLI----RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVS 147 (216)
T ss_pred eEEEEEccC-----CCCCccHHHHHHHhhcC----CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCC
Confidence 133332222 12489999999998777 35899999999999999999976 5556677776666544322
Q ss_pred ------CcceeEEEECCC---CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHH
Q 017422 247 ------ATAFGLMKIDEE---GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM 309 (372)
Q Consensus 247 ------~~~~g~v~id~~---g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l 309 (372)
...++++.+|++ .++..+.+++...... .+...++.-.+.. .-..++.++|||+|+++++
T Consensus 148 ~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~--~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 148 TEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLEL--IIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred ccccccCCCCcEEEEcCCCCceEEEechhhcCcCccc--ccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 567899999988 5888888877653211 0112222222211 1124688999999998753
No 56
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=195.67 Aligned_cols=226 Identities=16% Similarity=0.277 Sum_probs=155.7
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++.|||||+|.++||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.. +.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 4789999999999993 5999999997 9999999999998 89999999964 667777654 11
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCC-CEEEEEEecCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDA-DITVAALPMDE 244 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~a-diti~~~~~~~ 244 (372)
++++... + .+..|++ .+..++..+ ..+.|++++||. +...++.++++.|.+.+. ++++++.+.+.
T Consensus 64 ---~~v~~~~---~--~~~~g~~-~~~~a~~~~---~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PRK13368 64 ---GKVVMTS---D--DHLSGTD-RLAEVMLKI---EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPIST 131 (238)
T ss_pred ---CeEEecC---c--cCCCccH-HHHHHHHhC---CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCC
Confidence 2222111 1 1235776 466565544 347899999997 335669999999876654 55556655432
Q ss_pred C-C---CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 245 K-R---ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 245 ~-~---~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
. + ...+++ .++++|+|+.|.|+|.....+. ....++.++|+|+|++++|..+ ....+..
T Consensus 132 ~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~~---------------~~~~~~~n~giy~~~~~~l~~~-~~~~~~~ 194 (238)
T PRK13368 132 EEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRDG---------------ESARYLKHVGIYAFRRDVLQQF-SQLPETP 194 (238)
T ss_pred HHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCCC---------------CCCceeEEEEEEEeCHHHHHHH-HcCCCCh
Confidence 1 1 233444 4567799999987653211100 0013588999999999999854 3211111
Q ss_pred CC-hhh-hhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHh
Q 017422 321 ND-FGS-EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (372)
Q Consensus 321 ~~-~~~-dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~ 362 (372)
.+ +.. +++ .+++.|.+++++..+++|+||||++||..|+..
T Consensus 195 ~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 195 LEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred hhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 11 222 566 666658889999999999999999999999874
No 57
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.90 E-value=7.5e-23 Score=207.71 Aligned_cols=242 Identities=19% Similarity=0.309 Sum_probs=168.8
Q ss_pred CceEEEEEeCCCCCCCCCCccC-CCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhH-HHHHHHhhhcccCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASL-NRHLSRAYASNMGGY 165 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~-~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i-~~~l~~~~~~~l~~~ 165 (372)
|+|.+||||||.||||+|+|.. .||+|+|++|.+|||+++++.+...++.+.+|+|+.....+ .+.+.. +..
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-----~~~- 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-----LNK- 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-----cCC-
Confidence 4589999999999999999998 79999999776699999999999988888888887544332 333322 100
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc-C--CceEEEEcCCccCccc--HHHHHHHHH---HcCCCEEE
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-N--VLEFLVLAGDHLYRMD--YERFIQAHR---ETDADITV 237 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~-~--~~~~Lvl~gD~l~~~d--l~~ll~~h~---~~~aditi 237 (372)
.. ..++ .+|.. ++|+.||..+...+.+. . +.-++|+++||++... +.+.++... +.+.-+|+
T Consensus 78 -~~--~~ii---~EP~~----rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~ 147 (478)
T PRK15460 78 -LT--ENII---LEPAG----RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTF 147 (478)
T ss_pred -cc--ccEE---ecCCC----CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 00 1122 13333 79999988776656443 2 3568899999987632 444443322 23666777
Q ss_pred EEEecCCCCCcceeEEEECCC---------CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHH
Q 017422 238 AALPMDEKRATAFGLMKIDEE---------GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV 308 (372)
Q Consensus 238 ~~~~~~~~~~~~~g~v~id~~---------g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~ 308 (372)
.+.|. .+.+.||+++.++. ..|.+|.|||+...++.+. ..+.|++++|||+|+.+.
T Consensus 148 GI~Pt--~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl-------------~~G~y~WNsGiF~~~a~~ 212 (478)
T PRK15460 148 GIVPD--LPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYV-------------ASGEYYWNSGMFLFRAGR 212 (478)
T ss_pred ecCCC--CCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHH-------------HcCCEEEecceeheeHHH
Confidence 77774 45899999997642 2799999999998876553 345789999999999998
Q ss_pred HHHHHhhhCCCC--------------CCh--h-hhhHHH---------hhhCCCcEEEEEEcCeEeeCCCHHHHHHHH
Q 017422 309 MLNLLRDKFPGA--------------NDF--G-SEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNAN 360 (372)
Q Consensus 309 l~~ll~~~~~~~--------------~~~--~-~dvi~~---------li~~g~~V~a~~~~g~w~DIgT~ed~~~An 360 (372)
+.+.+++..|.- ..+ + .+.++. .+++-.+|.+++.+-.|.|+|+..++.+..
T Consensus 213 ~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 213 YLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 876666554310 000 0 222222 234445688888888899999999998863
No 58
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.90 E-value=3.6e-23 Score=190.19 Aligned_cols=200 Identities=23% Similarity=0.347 Sum_probs=139.7
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCCh-hhHHHHHHHhhhcccCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~~~ 168 (372)
|+|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++.. +.+.+++... .+.. ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~-~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSF-PLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhc-cccc----Cc
Confidence 6899999999999999999999999999997 99999999999999999999999765 4566666542 1111 00
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCC---
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEK--- 245 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~--- 245 (372)
....+... + ....||+++++.+...+ .++|+|++||++++.++.++++.|++.++.+|+++.+....
T Consensus 75 ~~~~~~~~-~-----~~~~gt~~al~~~~~~i----~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~ 144 (214)
T cd04198 75 KLDEVTIV-L-----DEDMGTADSLRHIRKKI----KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQ 144 (214)
T ss_pred ceeEEEec-C-----CCCcChHHHHHHHHhhc----CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccc
Confidence 11112111 1 12489999999998766 35799999999999999999999999999999988775421
Q ss_pred --------CCcceeEEEECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHH
Q 017422 246 --------RATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDV 308 (372)
Q Consensus 246 --------~~~~~g~v~id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~ 308 (372)
....+.++.+|++ +++..+....+.+.. ..+...++.--|. ..-...+.++++|+|++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~--~~~~~~~l~~~~~-~~i~~~l~D~hiyi~~~~v 213 (214)
T cd04198 145 KGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDED--LELRKSLLKRHPR-VTITTKLLDAHVYIFKRWV 213 (214)
T ss_pred cCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhh--hhHHHHHHHhCCC-EEEEcCcccceEEEEEeee
Confidence 1234667777764 678876543222111 1111112211111 1112457788899988765
No 59
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=2.9e-21 Score=182.58 Aligned_cols=243 Identities=22% Similarity=0.328 Sum_probs=171.0
Q ss_pred ceEEEEEeCCCCCCCCCCcc-CCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhH-HHHHHHhhhcccCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTK-KRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASL-NRHLSRAYASNMGGY 165 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~-~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i-~~~l~~~~~~~l~~~ 165 (372)
.|++||||||.|||||||+. .+||+++++.|..+|++.++..+.. .++++++|||+.....+ .+.+.. ++..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e-----~~~~ 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPE-----IDIE 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhh-----hhhc
Confidence 37899999999999999974 6999999997767999999999998 67899999998544322 222222 1000
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHh-cCCceEEEEcCCccCccc--HHHHHHHH---HHcCCCEEEEE
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDHLYRMD--YERFIQAH---RETDADITVAA 239 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~-~~~~~~Lvl~gD~l~~~d--l~~ll~~h---~~~~aditi~~ 239 (372)
...+ + ++ +|.+ ++|+-||..+.-.+.+ .++.-++|+++||+.... +.+.++.. .+.+.-+|+..
T Consensus 76 ~~~~-i-ll----EP~g----RnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI 145 (333)
T COG0836 76 NAAG-I-IL----EPEG----RNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGI 145 (333)
T ss_pred cccc-e-Ee----ccCC----CCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 0011 1 22 3455 7899999877655544 344468899999988633 55555443 34566677777
Q ss_pred EecCCCCCcceeEEEECC------CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHH
Q 017422 240 LPMDEKRATAFGLMKIDE------EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLL 313 (372)
Q Consensus 240 ~~~~~~~~~~~g~v~id~------~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll 313 (372)
.| ..+.+.||+++..+ -.+|.+|.|||+.+.++.+. ..+.|+++.|+|+|+...+.+.+
T Consensus 146 ~P--t~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 146 PP--TRPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred CC--CCCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHHHHHH
Confidence 66 35689999998754 23799999999998877653 44569999999999999887777
Q ss_pred hhhCCCC-------------CChh---hhh--------HHH-hhhCCCcEEEEEEcCeEeeCCCHHHHHHHHH
Q 017422 314 RDKFPGA-------------NDFG---SEV--------IPG-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (372)
Q Consensus 314 ~~~~~~~-------------~~~~---~dv--------i~~-li~~g~~V~a~~~~g~w~DIgT~ed~~~An~ 361 (372)
++..|.- .++. .+. |.. .+++..++.+++.+-.|-|+|+...+++...
T Consensus 211 ~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 211 KKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 6654321 0000 111 111 2445678999999989999999999887654
No 60
>PLN02917 CMP-KDO synthetase
Probab=99.83 E-value=8.9e-19 Score=168.52 Aligned_cols=237 Identities=16% Similarity=0.191 Sum_probs=160.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+|+ +++.+.+.+++.. +
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~-~--------- 107 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCRG-F--------- 107 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHH-c---------
Confidence 45789999999999993 5999999997 999999999998765344333 3567777776653 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cc-ccHHHHHHHHHHcCCCEEE--EEEecC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YR-MDYERFIQAHRETDADITV--AALPMD 243 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~~aditi--~~~~~~ 243 (372)
+ ++++...+ . +..||+++ .+++..++. ..+.++++.||.- .. ..+.++++.+.+. .++++ ++.+..
T Consensus 108 -~-v~vi~~~~--~---~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~ 177 (293)
T PLN02917 108 -G-ADVIMTSE--S---CRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLK 177 (293)
T ss_pred -C-CEEEeCCc--c---cCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecC
Confidence 1 22221111 1 12577776 567666642 2468999999994 44 4499999988654 44433 223333
Q ss_pred CCCCcceeEEE--ECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---
Q 017422 244 EKRATAFGLMK--IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP--- 318 (372)
Q Consensus 244 ~~~~~~~g~v~--id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~--- 318 (372)
.+....||.++ .|++|++..|..++..+.... ...+...+..++|||.|+.+.|. .+.+..+
T Consensus 178 ~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~------------~~~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~ 244 (293)
T PLN02917 178 PEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG------------KVNPQFPYLLHLGIQSYDAKFLK-IYPELPPTPL 244 (293)
T ss_pred HHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc------------ccccccceEEEEEEEEeCHHHHH-HHHcCCCCcc
Confidence 34467888886 687899887775543321100 00012346889999999999988 4444322
Q ss_pred CCCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 319 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 319 ~~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+...+++++. ++++|.+|.++..+.....|||++|+.+|+..+.++.
T Consensus 245 e~e~yLtdl~--~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~~ 291 (293)
T PLN02917 245 QLEEDLEQLK--VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRERN 291 (293)
T ss_pred cchhccHHHH--HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 2234457776 6677999999998766779999999999999886554
No 61
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.7e-19 Score=171.82 Aligned_cols=256 Identities=21% Similarity=0.313 Sum_probs=163.0
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecC-ChhhHHHHHHHhhhcccCC
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQF-NSASLNRHLSRAYASNMGG 164 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~-~~~~i~~~l~~~~~~~l~~ 164 (372)
.+..++|||+|||.||||-.+|...||+|+|||++ |||+|+|+.|.++|+++|+|++.. ....|+..+...+..
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l---- 80 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDL---- 80 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcc----
Confidence 46779999999999999999999999999999986 999999999999999999999974 223444444443321
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
....-++++-...+ + ..||+++|+.....+. .++|||++||.+.+.++..+++.++..++...++......
T Consensus 81 ~~~~~~v~ip~~~~--~----d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s 151 (433)
T KOG1462|consen 81 KKRPDYVEIPTDDN--S----DFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALS 151 (433)
T ss_pred cccccEEEeecccc--c----ccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccc
Confidence 11212344432222 1 2799999998888774 4799999999999999999999999887765444433211
Q ss_pred ---------CCCcceeEEEECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHh
Q 017422 245 ---------KRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (372)
Q Consensus 245 ---------~~~~~~g~v~id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~ 314 (372)
+....+.++-++++ +|+.......+-+..-.+ -..+|---|. ..-...+..+-+|+|+..++. +|.
T Consensus 152 ~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i--~~slL~~~pr-ltl~t~L~dahiY~~k~~v~d-~l~ 227 (433)
T KOG1462|consen 152 EVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVI--RKSLLWNHPR-LTLTTKLVDAHIYVFKHWVID-LLS 227 (433)
T ss_pred cccccCcccccccccceeeeccccceeEEeecCCcCCCceeh--hhhhhhcCCc-eEEeccccceeeeeeHHHHHH-HHh
Confidence 01123344444444 343322211111100000 0000000000 001135778899999999886 665
Q ss_pred hhCCCCCChhhhhHHHhhhCC--------------------------------CcEEEEEEc--CeEeeCCCHHHHHHHH
Q 017422 315 DKFPGANDFGSEVIPGATSIG--------------------------------MRVQAYLYD--GYWEDIGTIEAFYNAN 360 (372)
Q Consensus 315 ~~~~~~~~~~~dvi~~li~~g--------------------------------~~V~a~~~~--g~w~DIgT~ed~~~An 360 (372)
+.. .-.+|-.+++|.+++++ .++++|..+ ..+..++|.-.|.++|
T Consensus 228 ~~~-sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN 306 (433)
T KOG1462|consen 228 EKE-SISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEIN 306 (433)
T ss_pred cCC-cceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhh
Confidence 431 22233456666665543 345566664 3477899999999999
No 62
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=1.3e-18 Score=152.91 Aligned_cols=220 Identities=12% Similarity=0.200 Sum_probs=154.1
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|.|||||||.|||+.|+|...||+|+.|.|+ |||+++|+.|.++||++|+||+||..+++. ++.+.|.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHHhcC----------
Confidence 6799999999999999999999999999997 999999999999999999999999999875 7777553
Q ss_pred cEEEe-ecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCCCc
Q 017422 170 FVEVL-AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRAT 248 (372)
Q Consensus 170 ~v~il-~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~ 248 (372)
|.++ ++.+. .-+...++..|+++++ +..|+.+|.++..++ ...+. ..+. -.++.... ...
T Consensus 69 -vtLvyN~kY~------~yNn~ySlyla~d~l~-----ntYiidsDnyl~kNi---f~~~~-~~S~-Yfav~~~~--~tn 129 (231)
T COG4750 69 -VTLVYNPKYR------EYNNIYSLYLARDFLN-----NTYIIDSDNYLTKNI---FLTKE-SHSK-YFAVYRSG--KTN 129 (231)
T ss_pred -eEEEeCchHH------hhhhHHHHHHHHHHhc-----ccEEeccchHhhhhh---hhcCc-ccce-EEEEEecC--CCc
Confidence 3333 22221 1467789999999995 688999999776442 11111 1111 11222211 122
Q ss_pred ceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHH---HHHHhhhC-C--CCCC
Q 017422 249 AFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM---LNLLRDKF-P--GAND 322 (372)
Q Consensus 249 ~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l---~~ll~~~~-~--~~~~ 322 (372)
.| ++..+.+|+|+++.-.. .+.++-+|+-.|+...- ..+++... . ...-
T Consensus 130 Ew-~l~~~~~~ki~~v~Igg------------------------~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~ 184 (231)
T COG4750 130 EW-LLIYNSDGKITRVDIGG------------------------LNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKL 184 (231)
T ss_pred ee-EEEEcCCCcEEEEEecC------------------------cccceEeeeeeecchhHHHHHHHHHHHHhCchhhhH
Confidence 33 35678899999885421 13477889999987533 33444332 1 1122
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhccCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l~~~ 366 (372)
+..++...-++ ...+++...++ --+++++.++|.+....++..
T Consensus 185 yWd~v~~~ni~-~l~m~iek~~~n~IyE~DsLdelrk~~~~~l~~ 228 (231)
T COG4750 185 YWDTVPMENIK-ELDMYIEKLNDNDIYEFDSLDELRKFEQKFLSP 228 (231)
T ss_pred HHHHHHHHHHH-HHhHhHHhhcCCceEEeccHHHHHhhhhhhcCC
Confidence 34666667777 67888888876 488999999999988876544
No 63
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.76 E-value=1e-16 Score=148.33 Aligned_cols=220 Identities=20% Similarity=0.220 Sum_probs=146.0
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCCh-hhHHHHHHHhhhcccCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~ 164 (372)
++.+.+||||||.|+||+ ...||+|+|++|+ |||+|+++++..++ +++|+|++++.. +.+...+..
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-------- 68 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-------- 68 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc--------
Confidence 356889999999999994 2479999999997 99999999999865 899999998655 333222211
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEec
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPM 242 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~ 242 (372)
....+.++. .+ .+.++++++++..++ ..+.++++.||. +... .++++++.+.+.+ .++.+.+.
T Consensus 69 --~~~~~~~~~-----~~----~~~~~sv~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (227)
T PRK00155 69 --KDPKVTVVA-----GG----AERQDSVLNGLQALP--DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV 133 (227)
T ss_pred --cCCceEEeC-----Cc----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec
Confidence 001122221 11 356899999987763 246789999998 4444 4999999887653 33444443
Q ss_pred CCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 243 ~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
.+ .+. .++++|.+.++.+ ... ....-+.+.|+.+.|.+++.....+ ..
T Consensus 134 ~~----~~~--~v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~~~~~-~~ 181 (227)
T PRK00155 134 KD----TIK--RSDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALARALAE-GK 181 (227)
T ss_pred cc----cEE--EEcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHHHHhc-CC
Confidence 22 122 3355676665422 111 1223348899999888777543221 22
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+..|....+...|.++..+..+..++||+|++||..|+..+..
T Consensus 182 ~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 182 TITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 3344444444457889888877778899999999999887653
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.76 E-value=7.2e-17 Score=148.15 Aligned_cols=211 Identities=18% Similarity=0.206 Sum_probs=145.1
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCCh-hhHHHHHHHhhhcccCCCCCCC
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+||||||.|+||+. ..||+|++++|+ |||+|+++++..+ ++++|+|++++.. +.+..++.. ..
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~-----------~~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA-----------RA 66 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc-----------CC
Confidence 79999999999963 469999999997 9999999999998 7999999998654 333333321 00
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
.++++. .+ .+..+++++++..++ ..+.+|++.||. +... .+.++++.+.+. +.++.+.+..
T Consensus 67 ~~~~~~-----~~----~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~---- 129 (217)
T TIGR00453 67 VPKIVA-----GG----DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVA---- 129 (217)
T ss_pred cEEEeC-----CC----chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEecc----
Confidence 123321 11 234578988887662 346899999999 4444 488999887654 3344444432
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dv 327 (372)
.++..+|++|.|+.+.++. . -+...+ .|.|+...+.+++...... ..+..|.
T Consensus 130 --~~v~~~~~~g~~~~~~~r~---~---------------------~~~~~~-p~~f~~~~l~~~~~~~~~~-~~~~~d~ 181 (217)
T TIGR00453 130 --DTLKRVEADGFIVETVDRE---G---------------------LWAAQT-PQAFRTELLKKALARAKEE-GFEITDD 181 (217)
T ss_pred --ceEEEEcCCCceeecCChH---H---------------------eEEEeC-CCcccHHHHHHHHHHHHhc-CCCCCcH
Confidence 2445567678787776621 1 123333 6899999888777543222 2223565
Q ss_pred HHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHh
Q 017422 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLG 362 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~ 362 (372)
...+...|.+|..+..+..+++|+|++||..|+..
T Consensus 182 ~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 182 ASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred HHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 66666668899998888778899999999999864
No 65
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.75 E-value=6.8e-17 Score=148.10 Aligned_cols=214 Identities=20% Similarity=0.243 Sum_probs=145.8
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
.+||||||.|+||+.. .||+|+|++|+ |||+|+++++..++ +++|+|++++........+.. +.. . .
T Consensus 2 ~~vILAaG~s~R~~~~---~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~------~-~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGAD---IPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGL------S-K 69 (218)
T ss_pred EEEEECCcccccCCCC---CCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-ccc------C-C
Confidence 5899999999999752 69999999997 99999999999976 899999998766554433311 100 1 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Ccc-cHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRM-DYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~~-dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
.+.++. .+ .+..+++++++..+++...+.++++.||.- ... .++++++.+.+.+. .+.+.+..+
T Consensus 70 ~~~~~~-----~~----~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~~~--- 135 (218)
T cd02516 70 VVKIVE-----GG----ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPVTD--- 135 (218)
T ss_pred CeEEEC-----Cc----hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEeccc---
Confidence 133321 11 345788999988774223567899999984 444 48999998865543 333444321
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dv 327 (372)
++...|++|.|+++.+.... ....++ ++|+.+.+.+++...... ..+.+|.
T Consensus 136 ---~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~ 186 (218)
T cd02516 136 ---TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDD 186 (218)
T ss_pred ---cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcH
Confidence 23346778999888663111 244555 789999998887654322 2235666
Q ss_pred HHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHH
Q 017422 328 IPGATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g~w~DIgT~ed~~~A 359 (372)
..-+.+.+.++..+..+..-+||+|++||..|
T Consensus 187 ~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 187 ASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred HHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 66666667788888866666699999999653
No 66
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.73 E-value=6.9e-16 Score=141.67 Aligned_cols=214 Identities=20% Similarity=0.249 Sum_probs=140.3
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
+.+||||+|.|+||. .|+|+|++|+ |||+|+++.+..++ +++|+|++ +.+.+.+++.. +..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~-~~~-------- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARK-YGA-------- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHH-hCC--------
Confidence 679999999999993 5999999997 99999999999987 78888877 45556555543 110
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc--CCceEEEEcCCccC--cccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH--NVLEFLVLAGDHLY--RMDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~--~~~~~Lvl~gD~l~--~~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.+.+........+ ..|+.+++++++..++.. ..+.++++.||.-+ ..++.++++.+...+++.++.+.+..+
T Consensus 64 -~~~~~~~~~~~~~---~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 139 (223)
T cd02513 64 -EVPFLRPAELATD---TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHR 139 (223)
T ss_pred -CceeeCChHHCCC---CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence 0111111100011 258899999999877542 13689999999933 355999999998888888877777543
Q ss_pred CCCcceeEEEECCCC-ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 245 KRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 245 ~~~~~~g~v~id~~g-~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
. ..++.. .+++| .+..+.++.... .+. ...-+..++|+|+++++.+.+... +
T Consensus 140 ~--~~~~~~-~~~~~~~~~~~~~~~~~~-~q~---------------~~~~~~~n~~~y~~~~~~~~~~~~--------~ 192 (223)
T cd02513 140 F--PWRALG-LDDNGLEPVNYPEDKRTR-RQD---------------LPPAYHENGAIYIAKREALLESNS--------F 192 (223)
T ss_pred C--cHHhee-eccCCceeccCcccccCC-cCC---------------ChhHeeECCEEEEEEHHHHHhcCC--------c
Confidence 2 222222 22233 222221111110 000 011357788999999987753211 1
Q ss_pred hhhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHh
Q 017422 324 GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~ 362 (372)
+ |.++..+..+. .-+||+|++||..|+..
T Consensus 193 --------~--g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 193 --------F--GGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred --------c--CCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 1 67899998876 58999999999999764
No 67
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.71 E-value=1.3e-15 Score=151.25 Aligned_cols=209 Identities=16% Similarity=0.171 Sum_probs=144.1
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
|+++.+||||||.|+||. ...||+++|++|+ |||+|+++++..++ +++|+|++++....+.+.+...
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~-------- 70 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPE-------- 70 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhccc--------
Confidence 567899999999999993 3589999999997 99999999999987 7999999987655443332211
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~ 243 (372)
...+.++. .+ .+..+++++++..++ .+.++|..||. +...+ +..+++...+ .+.++.+.++.
T Consensus 71 --~~~v~~v~-----gG----~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv~ 134 (378)
T PRK09382 71 --IKFVTLVT-----GG----ATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPVA 134 (378)
T ss_pred --CCeEEEeC-----CC----chHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEec
Confidence 11133221 11 346789999988774 36789999997 44444 7888887654 35667777765
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
+ ...|+...+|.+ .+..+ ++|... +.+.+.+..+ +.. .
T Consensus 135 D--tik~~~~tldR~-~l~~~-QTPQ~f---------------------------------~~~~l~~a~~----~~~-~ 172 (378)
T PRK09382 135 D--TLKRANETVDRE-GLKLI-QTPQLS---------------------------------RTKTLKAAAD----GRG-D 172 (378)
T ss_pred c--CcEEeeeEcCcc-cEEEE-ECCCCC---------------------------------CHHHHHHHHh----CCC-C
Confidence 4 445654445543 44433 555432 2222322221 111 2
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
.+|....+...|.+|..++-++.|++|+||+||..|+..+..
T Consensus 173 ~TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 173 FTDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred cccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 467777777779999999999999999999999999987754
No 68
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.71 E-value=2.8e-15 Score=140.27 Aligned_cols=228 Identities=15% Similarity=0.148 Sum_probs=142.8
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
+||+|+|.|+||. +|+|++++|+ |||.|+++++..+++++|+|++. .+.+.+++.. + + +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~----------g-~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-F----------G-I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-c----------C-C
Confidence 7999999999993 7999999997 99999999999989999999985 4556555543 1 1 1
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEEEEEEecCCCCC--
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEKRA-- 247 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~-- 247 (372)
+++...+ . ...|+.. +..+...+.....+.++++.||. +...+ +.++++.+.+.+.++++.+.+..+...
T Consensus 61 ~~v~~~~--~---~~~Gt~r-~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 61 EVCMTSK--H---HNSGTER-LAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred EEEEeCC--C---CCChhHH-HHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 2221101 1 1245433 33333333211235688999999 44544 899999886666777777777543111
Q ss_pred -cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh--
Q 017422 248 -TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG-- 324 (372)
Q Consensus 248 -~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~-- 324 (372)
.+...+..|.+|++..|.+.+.+....... .+..| +...++...|+|.|++++|.++.... ++..+-.
T Consensus 135 ~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~-----~~~tp---q~~~~~~h~Giy~~~~~~L~~~~~~~-~~~le~~e~ 205 (238)
T TIGR00466 135 NPNAVKVVLDSQGYALYFSRSLIPFDRDFFA-----KRQTP---VGDNLLRHIGIYGYRAGFIEEYVAWK-PCVLEEIEK 205 (238)
T ss_pred CCCceEEEeCCCCeEEEecCCCCCCCCCccc-----ccccc---cccceeEEEEEEeCCHHHHHHHHhCC-CCcccccch
Confidence 112233447788887787654321110000 00001 00136779999999999998776431 2221111
Q ss_pred hhhHHHhhhCCCcEEEEEEcCe-EeeCCCHHHH
Q 017422 325 SEVIPGATSIGMRVQAYLYDGY-WEDIGTIEAF 356 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~-w~DIgT~ed~ 356 (372)
-|-++ ++++|++|.+...+.. -..||||+|+
T Consensus 206 leqlr-~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 206 LEQLR-VLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred hHHHh-hhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 13333 4556999999999765 4599999997
No 69
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.3e-15 Score=154.12 Aligned_cols=259 Identities=18% Similarity=0.323 Sum_probs=180.2
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
..++||+||.-.-|||.|+|..+|+.|+|+..- |||+|+|+.|..+|+.+|+|.++.+..++.+|+.+. .|... ..
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s-ew~~~--~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS-EWYLP--MS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc-ccccc--cc
Confidence 459999999999999999999999999999964 999999999999999999999999999999999883 22211 11
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc-CCceEEEEcCCccCcccHHHHHHHHHHc-----CCCEEEEEEe
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYRMDYERFIQAHRET-----DADITVAALP 241 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~-~~~~~Lvl~gD~l~~~dl~~ll~~h~~~-----~aditi~~~~ 241 (372)
.-.+.|. +++ .+..||++|..- +.. -..+|++++||++.++++.++++.|+++ ++-+|+++.+
T Consensus 99 ~~v~ti~----s~~----~~S~GDamR~id---~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~ 167 (673)
T KOG1461|consen 99 FIVVTIC----SGE----SRSVGDAMRDID---EKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKE 167 (673)
T ss_pred ceEEEEc----CCC----cCcHHHHHHHHH---hcceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEec
Confidence 0112221 111 367888887442 111 3579999999999999999999999654 3346777776
Q ss_pred cCCCCCcceeEEEECC-CCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC--
Q 017422 242 MDEKRATAFGLMKIDE-EGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP-- 318 (372)
Q Consensus 242 ~~~~~~~~~g~v~id~-~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~-- 318 (372)
........--++.+|. +.++..+.+-.... .....++.++--.++ ..-...+...+|-+++++++. +....|.
T Consensus 168 ~st~~~~~~~~~avd~~T~~ll~yq~~~~~~--~~~~l~~sl~d~~~~-v~vr~DL~dc~IdIcS~~V~s-LF~dNFDyq 243 (673)
T KOG1461|consen 168 SSTRETTEQVVIAVDSRTSRLLHYQKCVREK--HDIQLDLSLFDSNDE-VEVRNDLLDCQIDICSPEVLS-LFTDNFDYQ 243 (673)
T ss_pred cccccCCcceEEEEcCCcceEEeehhhcccc--cccccCHHHhcCCCc-EEEEccCCCceeeEecHhHHH-Hhhhcccce
Confidence 5321223334455665 46788776411110 011122223311111 112345778999999999986 5555542
Q ss_pred CCCChhhhhHHHhhhCCCcEEEEEEcC--eEeeCCCHHHHHHHHHhccCC
Q 017422 319 GANDFGSEVIPGATSIGMRVQAYLYDG--YWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 319 ~~~~~~~dvi~~li~~g~~V~a~~~~g--~w~DIgT~ed~~~An~~l~~~ 366 (372)
...+|...+|-.=+- |++|+++.... |-..+.+...|-..+..++.+
T Consensus 244 ~r~DfV~GvL~~dil-g~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~R 292 (673)
T KOG1461|consen 244 TRDDFVRGVLVDDIL-GYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQR 292 (673)
T ss_pred ehhhhhhhhhhhhhc-CCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHh
Confidence 445666666654444 89999999975 889999999999888887764
No 70
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.67 E-value=4.3e-15 Score=137.96 Aligned_cols=220 Identities=16% Similarity=0.122 Sum_probs=142.3
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChh-hHHHHHHHhhhcccCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSA-SLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~~ 166 (372)
.+.+||||||.|+||+ ...||+|++++|+ |||+|+++++..+ .+++|+|+++.... .+.+.+.. +..
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~------ 70 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNV------ 70 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCc------
Confidence 4689999999999995 2479999999997 9999999999986 48999999975432 22223322 211
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~ 244 (372)
....++++. .+ .+..+++++++..+++ .+.++++.||. +...+ +.++++.+.+.++. +.+.++.+
T Consensus 71 ~~~~~~~v~-----~g----~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d 137 (230)
T PRK13385 71 ADQRVEVVK-----GG----TERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD 137 (230)
T ss_pred CCCceEEcC-----CC----chHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc
Confidence 001133321 11 2345899999877742 35678889999 44544 89999988765543 33344321
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~ 324 (372)
. ++...+|.+....+ -+. .+..-+.+.|+.+.|.+..+....+ ..+.
T Consensus 138 ------t-i~~~~~~~~~~~i~---r~~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~-~~~~ 184 (230)
T PRK13385 138 ------T-VKRVKDKQVIETVD---RNE----------------------LWQGQTPQAFELKILQKAHRLASEQ-QFLG 184 (230)
T ss_pred ------e-EEEEcCCeeEeccC---HHH----------------------HhhhcCCceeeHHHHHHHHHHHHhc-CCCc
Confidence 1 22223455543322 111 1223347888988887666532212 2234
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+|....+...|.+|..++-+...+.|+|++|+..|+..+..
T Consensus 185 td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 185 TDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred CcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHhh
Confidence 66566666668899999888889999999999999887644
No 71
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.66 E-value=2.6e-15 Score=134.17 Aligned_cols=120 Identities=19% Similarity=0.315 Sum_probs=89.7
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
+||||||.|+||+ .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+..++... .+ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~----------~~-v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH----------SN-I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC----------CC-e
Confidence 7999999999997 59999999997 999999999999899999999998776654443321 11 3
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cc-ccHHHHHHHHHHcCCCEE
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YR-MDYERFIQAHRETDADIT 236 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~~adit 236 (372)
.++. ++.|..|++++++.++.+ . ...+.++|++||+. +. ..+..+++.+...+.+++
T Consensus 65 ~~v~------~~~~~~g~~~si~~~l~~-~-~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVH------NPQYAEGQSSSIKLGLEL-P-VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEE------CcChhcCHHHHHHHHhcC-C-CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 3332 112346899999988762 1 13578999999994 44 458899988776665544
No 72
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.65 E-value=2.5e-14 Score=132.43 Aligned_cols=214 Identities=17% Similarity=0.202 Sum_probs=145.6
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCc
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~ 170 (372)
|||+|+|.++||. .|.+.|++|+ |||.|+|+.+.+++ +++|+|.+ +++.+.+.... +.. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~g~---------~ 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-YGA---------S 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-cCC---------E
Confidence 7999999999993 6999999997 99999999999987 68887766 44556554443 211 0
Q ss_pred EEEeecccCCCCCCCCCCcHHHHHHHHHHHHh-cCCceEEEEcCCccCc--ccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDHLYR--MDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 171 v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~-~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.+.++.....+ ..|+.++++.++..+++ ...+.++++.+|.-+. .++..+++.+.+.++|.++.+.+...++.
T Consensus 63 v~~~r~~~l~~d---~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~ 139 (222)
T TIGR03584 63 VPFLRPKELADD---FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQ 139 (222)
T ss_pred eEEeChHHHcCC---CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChH
Confidence 212222111111 37889999999987753 2346799999999554 45999999998877898888877544322
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEV 327 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dv 327 (372)
.. ...+++|++..+.........+. ...-|..++++|+++++.+.+ ... +.
T Consensus 140 ~~---~~~~~~g~~~~~~~~~~~~~rQd---------------~~~~y~~nga~y~~~~~~~~~--~~~------~~--- 190 (222)
T TIGR03584 140 RA---FKLKENGGVEMFFPEHFNTRSQD---------------LEEAYHDAGQFYWGKSQAWLE--SGP------IF--- 190 (222)
T ss_pred Hh---eEECCCCcEEecCCCcccCCCCC---------------CchheeeCCeEEEEEHHHHHh--cCC------cc---
Confidence 22 24456777766542211111110 112367799999999987752 111 11
Q ss_pred HHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhc
Q 017422 328 IPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 328 i~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l 363 (372)
+.++.+|..+. .-.||||++||..|+..+
T Consensus 191 -------~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 191 -------SPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred -------CCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 66889999876 489999999999998754
No 73
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.64 E-value=1.2e-15 Score=133.21 Aligned_cols=122 Identities=25% Similarity=0.352 Sum_probs=94.6
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcE
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFV 171 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v 171 (372)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.+.|+++|+|++++ +.+..++... + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----------~-~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----------G-I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----------T-S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----------C-c
Confidence 7999999999996 49999999997 999999999999999999999987 4454444321 1 3
Q ss_pred EEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCCEEEEEEe
Q 017422 172 EVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDADITVAALP 241 (372)
Q Consensus 172 ~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~aditi~~~~ 241 (372)
+++.. +.|..|.+.+++.++..+. ..++|++++||+.+ .. .+..+++.+.+.+.++++....
T Consensus 61 ~~v~~------~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 61 KVVVD------PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp EEEE-------STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred eEEEe------ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEEC
Confidence 34321 2234899999999987763 46899999999955 54 4999999998888887655443
No 74
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.62 E-value=5.3e-14 Score=126.97 Aligned_cols=118 Identities=24% Similarity=0.275 Sum_probs=84.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|.+||||||.|+||+. .||+++|++|+ |||+|+++.+. .++++|+|+++...+.+ .. +
T Consensus 1 ~~~~~~vILA~G~s~Rm~~----~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMGG----VDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCCC----CCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--------
Confidence 5679999999999999952 69999999997 99999999998 77999999987543321 11 0
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDAD 234 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~ad 234 (372)
+ +.++... . .+..|..++|+.++... ..+.++++.||+ +...+ +..+++.+.+.+..
T Consensus 62 --~-~~~v~~~---~--~~~~g~~~~i~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 120 (193)
T PRK00317 62 --G-LPVIPDS---L--ADFPGPLAGILAGLKQA---RTEWVLVVPCDTPFIPPDLVARLAQAAGKDDAD 120 (193)
T ss_pred --C-CcEEeCC---C--CCCCCCHHHHHHHHHhc---CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCc
Confidence 1 2222111 0 11268889999888754 357899999999 44544 88888765444333
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.62 E-value=1.9e-14 Score=128.24 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+.+||||||.|+||+. ||+++|++|+ |||+|+++.+... +++|+|++++..+. . .. + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~-~~-~----------~ 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---Y-AL-L----------G 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---H-hh-c----------C
Confidence 4689999999999973 9999999997 9999999999988 89999999876654 1 11 0 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHHHcCCCEE
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~~~~adit 236 (372)
+.++.. +.|..|..++|+.++..++ .+.++++.||+-+ ..+ +..+++.+ ..+.+++
T Consensus 59 -~~~v~~------~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~ 116 (181)
T cd02503 59 -VPVIPD------EPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA-EEGADAV 116 (181)
T ss_pred -CcEeeC------CCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEE
Confidence 223321 1234799999999987663 5789999999944 544 78888776 4444543
No 76
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.61 E-value=9.2e-15 Score=131.45 Aligned_cols=125 Identities=22% Similarity=0.280 Sum_probs=97.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|.+||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+...+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 7899999999999975 79999999997 9999999999999999999999988888887876521
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHcCCCEEEEEEe
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRETDADITVAALP 241 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~~aditi~~~~ 241 (372)
..+.. + . -.|...++..++..+. ..++|++++||+.+ . ..+..+++.+...+.+...++.+
T Consensus 65 -~~~~~---~-~----g~G~~~~l~~al~~~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 65 -KDYKN---A-S----GKGYIEDLNECIGELY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred -cEEEe---c-C----CCCHHHHHHHHhhccc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 11221 1 1 2677788888876442 24789999999955 3 45899999887777666555544
No 77
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.59 E-value=9.6e-14 Score=124.37 Aligned_cols=191 Identities=21% Similarity=0.276 Sum_probs=130.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
.++.+||||||.|+||+ .+|-|+|+.|+ |++.++++.+..+++++++|+++|.......-... .
T Consensus 4 ~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~------ 67 (199)
T COG2068 4 STVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----Q------ 67 (199)
T ss_pred cceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----c------
Confidence 45889999999999998 79999999997 99999999999999999999999872222111111 0
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc--CcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL--YRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l--~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
..+.++ .+++|.+|.+.+++.++..+.... +.++++.||+- ...++.++++.+.+++ .+ +.+.
T Consensus 68 -~~~~~v------~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~~---v~p~--- 132 (199)
T COG2068 68 -LGVTVV------VNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-AA---VRPV--- 132 (199)
T ss_pred -CCeEEE------eCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-ce---eeee---
Confidence 113343 245677999999999988876422 58999999994 3456999999887763 22 1121
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
| +|. ... -.+|.++.|..+.+ . ++ +
T Consensus 133 ----~-------~g~-------rG~------------------------------Pv~~~~~~~~~l~~-l-~G--D--- 157 (199)
T COG2068 133 ----Y-------GGA-------RGH------------------------------PVLLSKDLFPALAR-L-SG--D--- 157 (199)
T ss_pred ----c-------cCC-------cCC------------------------------ceeechhHHHHHhh-c-CC--c---
Confidence 1 011 000 12567777754432 1 22 1
Q ss_pred hhHHHhhh-CCCcEEEEEE-cCeEeeCCCHHHHHHHHHhcc
Q 017422 326 EVIPGATS-IGMRVQAYLY-DGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 326 dvi~~li~-~g~~V~a~~~-~g~w~DIgT~ed~~~An~~l~ 364 (372)
.-.+.+++ .+..+..++. .+.-.||||||||.+++..+.
T Consensus 158 ~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 158 VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred hhHHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 12344443 3556666666 567999999999999998765
No 78
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.56 E-value=1.7e-13 Score=119.67 Aligned_cols=110 Identities=24% Similarity=0.342 Sum_probs=87.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|.+||+|||+||||.- .-|||++++|+ |||+|+++.+.+ .+++|++++..+...+..|+...+
T Consensus 1 m~~iiMAGGrGtRmg~----~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMGR----PEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccCC----CcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 5799999999999973 56999999998 999999999998 789999999999999999987621
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHH
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHR 229 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~ 229 (372)
++++. +|. .|--.-++.++..+. .++|++++|+.+ +.. +..+++.+.
T Consensus 64 -v~vi~---tpG-----~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIE---TPG-----EGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEE---cCC-----CChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 55553 232 356666777766663 499999999955 443 777777765
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.56 E-value=3.7e-14 Score=126.02 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+.+||||||.|+||++ +|+|+|++|+ |||+|+++++...++++|+|+++++.+.+.+++.. .+
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-----------~~ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-----------LP 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-----------CC
Confidence 4689999999999975 9999999997 99999999999999999999999876655443321 11
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cc-ccHHHHHHHHHHcCCCE
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YR-MDYERFIQAHRETDADI 235 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~~adi 235 (372)
+.++.. +.+..|++++++.++..+.. ..+.+++++||+. .. ..+..+++.+...++++
T Consensus 64 -~~~~~~------~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVIN------PDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeC------CChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 223221 11237999999999887753 3578999999993 44 44888888876555544
No 80
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.55 E-value=8e-13 Score=124.61 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=139.1
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
++.+.+||||||.|+||+ ...||++++++|+ |||+|+++++.+ .++++|+|++++......+.+...+.
T Consensus 22 ~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~------ 91 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENID------ 91 (252)
T ss_pred cCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcC------
Confidence 445789999999999995 3479999999997 999999999998 48999999998664333222211111
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCC--c-cCccc-HHHHHHHHHHcCCCEEEEEEe
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGD--H-LYRMD-YERFIQAHRETDADITVAALP 241 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD--~-l~~~d-l~~ll~~h~~~~aditi~~~~ 241 (372)
..+.+.. .+ .+..++|++++..++. +..+|+.+| . +...+ +.++++...+.++ .+.+.+
T Consensus 92 ---~~i~~v~-----gg----~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~ga--~i~~~~ 154 (252)
T PLN02728 92 ---VPLKFAL-----PG----KERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHGA--AVLGVP 154 (252)
T ss_pred ---CceEEcC-----CC----CchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--EEEeec
Confidence 0122211 11 2456789999887742 334566666 3 55544 7889988776654 345555
Q ss_pred cCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCC
Q 017422 242 MDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (372)
Q Consensus 242 ~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~ 321 (372)
..+ .+..+++++.|.+ .++-... +..---..|+.+.|.+..+....+ .
T Consensus 155 ~~d------tik~v~~~~~v~~---t~~R~~l----------------------~~~QTPQ~F~~~~l~~a~~~~~~~-~ 202 (252)
T PLN02728 155 VKA------TIKEANSDSFVVK---TLDRKRL----------------------WEMQTPQVIKPELLRRGFELVERE-G 202 (252)
T ss_pred chh------hEEEecCCCceee---ccChHHe----------------------EEEeCCccchHHHHHHHHHHHHhc-C
Confidence 332 2223455665533 2222221 111223466777776665543222 1
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
...+|-...+...|.+|..++-+..-+-|.||+|+..|+..+..+.
T Consensus 203 ~~~TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~~~ 248 (252)
T PLN02728 203 LEVTDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNERS 248 (252)
T ss_pred CCcCcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhhcc
Confidence 1235544444455888888666667889999999999998776543
No 81
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.55 E-value=2.9e-13 Score=121.82 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=88.6
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+.+||||||.|+||+ .+|.+++++|+ |||+|+++.+...++++|+|++++..+.+. .+...... ..+
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~~~------~~~ 67 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYLLA------DER 67 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhhhc------CCC
Confidence 358999999999997 48999999997 999999999888899999999987654321 12111000 011
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHHHcCCCE
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHRETDADI 235 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~~~~adi 235 (372)
+.++. +++|..|.+++|+.++..+.....+.++|+.||+-+ ..+ +..+++.......++
T Consensus 68 -~~~~~------~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~ 128 (190)
T TIGR03202 68 -IMLVC------CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDY 128 (190)
T ss_pred -eEEEE------CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCE
Confidence 33321 223457899999999987643345789999999944 444 778887765444443
No 82
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.54 E-value=3.2e-13 Score=120.75 Aligned_cols=119 Identities=24% Similarity=0.286 Sum_probs=84.7
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
+.+||||||.|+||+. +||+|+|++|+ |||+|+++++.. ++++|+|++++..+. +.... .+
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~----------~~ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAG----------FG 61 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhcc----------CC
Confidence 4689999999999962 59999999997 999999999986 599999998754322 11110 01
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEE
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adit 236 (372)
+.++... ..+..|++++|+.++..++ .+.++|+.||. +...+ +.++++.+.+.+++++
T Consensus 62 -~~~i~~~-----~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 121 (186)
T TIGR02665 62 -LPVVPDA-----LADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALEASDADIA 121 (186)
T ss_pred -CcEEecC-----CCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence 2222211 1123799999999987763 46899999999 55555 7788877655455544
No 83
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.54 E-value=4.7e-13 Score=121.89 Aligned_cols=112 Identities=22% Similarity=0.291 Sum_probs=81.2
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
+.+.+||||||.|+||+ .+|++++++|+ |||+|+++++... +++|+|++++. +... .+..
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~~~-~~~~----------- 65 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ERYQ-SLLP----------- 65 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HHHH-hhcc-----------
Confidence 45889999999999996 48999999997 9999999999764 79999988632 2221 1110
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHH
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHR 229 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~ 229 (372)
.+ +.++. +..|..|..++++.++..++ .+.++|+.||+-+ ..+ +..+++.+.
T Consensus 66 ~~-~~~i~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 66 PG-CHWLR------EPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred CC-CeEec------CCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 01 23331 12234799999999988774 4789999999944 444 788887654
No 84
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=2e-12 Score=117.02 Aligned_cols=235 Identities=18% Similarity=0.225 Sum_probs=165.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++..+||+|.=.+||| .-|||-.|+|+ |||.|+.+++.++|.++|+|.| +++.|.+++...
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---------- 62 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---------- 62 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh----------
Confidence 4567999999999999 57999999997 9999999999999999999999 778888888762
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
|..-++. + .+...|| +-+..+...+.-..++.++=+-||.-+ .. .+.++++...++++++.-.+.+..++
T Consensus 63 -G~~avmT---~---~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ 134 (247)
T COG1212 63 -GGEAVMT---S---KDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDE 134 (247)
T ss_pred -CCEEEec---C---CCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCH
Confidence 1111331 1 1123677 456555555543334556667899944 43 48888888888888876666665432
Q ss_pred -CC--cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 246 -RA--TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 246 -~~--~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
.. .+--.+..|.+|+...|...|-+..... . ...+++--.|||-|++.+|.++.... |...+
T Consensus 135 ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~-------------~~~p~l~HIGIYayr~~~L~~f~~~~-ps~LE 199 (247)
T COG1212 135 EEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-F-------------GGTPFLRHIGIYAYRAGFLERFVALK-PSPLE 199 (247)
T ss_pred HHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-c-------------CCcchhheeehHHhHHHHHHHHHhcC-CchhH
Confidence 11 2222344788999999999887654211 0 01367888999999999998876542 32211
Q ss_pred hhhhhHHH--hhhCCCcEEEEEEcCeE-eeCCCHHHHHHHHHhccC
Q 017422 323 FGSEVIPG--ATSIGMRVQAYLYDGYW-EDIGTIEAFYNANLGITK 365 (372)
Q Consensus 323 ~~~dvi~~--li~~g~~V~a~~~~g~w-~DIgT~ed~~~An~~l~~ 365 (372)
-.|-|.+ ++..|++|.+...+..- ..|||+|||.++...+..
T Consensus 200 -~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 200 -KIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred -HHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 1233333 45679999999998764 999999999999987754
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.47 E-value=2.5e-12 Score=127.65 Aligned_cols=122 Identities=24% Similarity=0.308 Sum_probs=86.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
++.+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++|+|+++...+.+.+++..
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~---------- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG---------- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC----------
Confidence 456889999999999995 269999999997 999999999986 4899999776554443322111
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEE
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adit 236 (372)
+.++.... ++ ..|..++|+.++..++ .+.++|++||+ ++..+ +..+++.+...+++++
T Consensus 67 ----~~~i~d~~----~g-~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v 126 (366)
T PRK14489 67 ----LPVYPDIL----PG-FQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGADIA 126 (366)
T ss_pred ----CcEEecCC----CC-CCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEE
Confidence 11221111 11 1588899999987663 46799999998 44544 7888887666666543
No 86
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.47 E-value=2.7e-12 Score=116.56 Aligned_cols=103 Identities=17% Similarity=0.347 Sum_probs=72.6
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCC-CcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA-NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG-~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
+++.+||||||.|+||+ .+|+++|++| + |||+|+++++... +++|+|++++ +.. . .
T Consensus 7 ~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~------ 63 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----F------ 63 (196)
T ss_pred cCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----c------
Confidence 45889999999999995 6999999999 7 9999999999877 8999999974 111 0 0
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHH
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERF 224 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~l 224 (372)
. +.++.... .. ..|...++..++... ..+.++|+.||+.+ ..+ +.++
T Consensus 64 ~---~~~v~d~~--~~---~~gpl~gi~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 N---APFLLEKE--SD---LFSPLFGIINAFLTL---QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred C---CcEEecCC--CC---CCCcHHHHHHHHHhc---CCCeEEEEecCcCcCCHHHHHHH
Confidence 0 12222111 11 256666776655433 35789999999954 555 5565
No 87
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.44 E-value=1.3e-11 Score=114.60 Aligned_cols=115 Identities=25% Similarity=0.280 Sum_probs=80.3
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCCh--hhHHHHHHHhhhcccCCCCCC
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~--~~i~~~l~~~~~~~l~~~~~~ 168 (372)
|||||+|.++||. +|.|+|++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~---------- 63 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L---------- 63 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----------
Confidence 7999999999993 5999999997 99999999999987 899999998765 455555432 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCCEE
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDADIT 236 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~adit 236 (372)
+ +.++. ++.| + .+......+.....+.++++.||+-+ .. .++++++.+.+.+.+++
T Consensus 64 ~-v~~v~------~~~~--~---~l~~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 64 G-VKVFR------GSEE--D---VLGRYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred C-CeEEE------CCch--h---HHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 1 23331 1111 1 22222222322235789999999944 43 48999998887777765
No 88
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.37 E-value=1.4e-10 Score=107.12 Aligned_cols=216 Identities=19% Similarity=0.224 Sum_probs=130.5
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhh-HHHHHHHhhhcccCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSAS-LNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~-i~~~l~~~~~~~l~~~~~ 167 (372)
+.+||||||.|+||+. ..||.+++++|+ |+|.|+++.+.+ ..|++|+|++...... +.+.+..
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 4699999999999963 589999999997 999999999988 4689999999765532 3322222
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
..+.++. .+ ..-.+++++++..+.+.. +.+||..|== +...+ +.++++...+ +.+..+.+.|+.+
T Consensus 66 -~~v~iv~-----GG----~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p~~D- 132 (221)
T PF01128_consen 66 -KKVKIVE-----GG----ATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALPVTD- 132 (221)
T ss_dssp -TTEEEEE-----------SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE-SS-
T ss_pred -CCEEEec-----CC----hhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEeccc-
Confidence 1144442 11 235589999998887522 4556654433 33333 8888888765 2444556666543
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
.+..++++|.|.+.... +. .+.--.-..|+.+.+.+..+........ .+
T Consensus 133 -----Tik~v~~~~~v~~tldR---~~----------------------l~~~QTPQ~F~~~~l~~a~~~a~~~~~~-~t 181 (221)
T PF01128_consen 133 -----TIKRVDDDGFVTETLDR---SK----------------------LWAVQTPQAFRFELLLEAYEKADEEGFE-FT 181 (221)
T ss_dssp -----EEEEESTTSBEEEEETG---GG----------------------EEEEEEEEEEEHHHHHHHHHTHHHHTHH-HS
T ss_pred -----cEEEEecCCcccccCCH---HH----------------------eeeecCCCeecHHHHHHHHHHHHhcCCC-cc
Confidence 34567778877654321 11 1222334577888887776554211111 23
Q ss_pred hhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
|-...+...|.+|..++-+..-+=|.||+|+..|+..+.
T Consensus 182 Ddasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll~ 220 (221)
T PF01128_consen 182 DDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALLK 220 (221)
T ss_dssp SHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHhc
Confidence 322333333888888887777788999999999988653
No 89
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.37 E-value=4e-11 Score=119.19 Aligned_cols=110 Identities=11% Similarity=0.196 Sum_probs=76.7
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
++++.+||||||.|+||+ .+|+|+|++|+ |||+|+++.+... +++|+|+++..... .+.. +
T Consensus 172 ~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~-~-------- 232 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS-F-------- 232 (369)
T ss_pred cCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh-c--------
Confidence 456789999999999996 59999999997 9999999999864 78898887643221 1111 1
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHH
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQA 227 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~ 227 (372)
+ +.++.... ...|...++..++... ..+.++|+.||+-+ ..+ +..+++.
T Consensus 233 ~---v~~i~d~~------~~~Gpl~gi~~al~~~---~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 G---IPLITDSY------LDIGPLGGLLSAQRHH---PDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred C---CcEEeCCC------CCCCcHHHHHHHHHhC---CCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 22332111 1268778888876544 34679999999944 544 6677654
No 90
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.37 E-value=1.5e-10 Score=106.96 Aligned_cols=223 Identities=18% Similarity=0.191 Sum_probs=140.0
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecC-ChhhHHHHHHHhhhcccCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQF-NSASLNRHLSRAYASNMGG 164 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~-~~~~i~~~l~~~~~~~l~~ 164 (372)
++.+-+||||||.|+||.. ..||..++++|+ |||+|.++.+..+ .|++|+|+++. ....+.++... .
T Consensus 2 ~~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~--~----- 70 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL--S----- 70 (230)
T ss_pred CceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh--c-----
Confidence 3557899999999999975 799999999997 9999999999885 47999999976 33333333321 0
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEec
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPM 242 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~ 242 (372)
....++++. .+ ..-.+++++++..+.++..+.|||..+== +.. ..+.++++... +....+.+.|+
T Consensus 71 --~~~~v~~v~-----GG----~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 71 --ADKRVEVVK-----GG----ATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred --cCCeEEEec-----CC----ccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 112244432 12 34568999999888753345566654433 333 34788884433 34445666675
Q ss_pred CCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 243 DEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 243 ~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
.+ .+...+++|.|.+......-... ---..|+.+.|.+.+.+.+....+
T Consensus 138 ~D------Tik~~~~~~~i~~t~~R~~l~~~-------------------------QTPQ~F~~~~L~~a~~~a~~~~~~ 186 (230)
T COG1211 138 TD------TLKRVDADGNIVETVDRSGLWAA-------------------------QTPQAFRLELLKQALARAFAEGRE 186 (230)
T ss_pred cC------cEEEecCCCCeeeccChhhhhhh-------------------------hCCccccHHHHHHHHHHHHhcCCC
Confidence 43 33445566776654322111110 001256777777666655433223
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+..| -..+...|.++..+.=+-+-+-|-||+|+..|+..+..
T Consensus 187 ~tDd-as~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 187 ITDD-ASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred cCCH-HHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 3222 22222227888888777778899999999999987754
No 91
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.35 E-value=5.1e-11 Score=107.86 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
+++|.+||||||+|+|| .+|+|++++|+ |||+|+++.+....- .++|+...+.+. +...
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~---------- 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF---------- 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc----------
Confidence 45689999999999999 58999999997 999999999998754 555555433321 1111
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHHHcC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHRETD 232 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ 232 (372)
+ ++++.. ...++ |...+|+.++..+. .+.+++++||+-+ ..+ +..+.+...+.+
T Consensus 61 --g-~~vv~D-----~~~~~-GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 --G-LPVVPD-----ELPGF-GPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred --C-Cceeec-----CCCCC-CCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 233322 22223 99999999987773 5789999999955 444 677777665555
No 92
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.33 E-value=4.5e-11 Score=107.54 Aligned_cols=222 Identities=20% Similarity=0.218 Sum_probs=146.9
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
+++..|||+|.|.++|. .-|.+.+++|+ |||.|+|+++.+++ |++|+|-+ +++.|.+.-.. |...
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~-ygak---- 66 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKK-YGAK---- 66 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHH-hCcc----
Confidence 35678999999999999 57999999997 99999999999988 58888877 67766655443 2110
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
+.+.++.....+. ..|.+++..++..+.. ..+.++.+.+-- +...+++..++.+...+.+-.+.+.+.+
T Consensus 67 -----~~~~Rp~~LA~D~---ast~~~~lh~le~~~~-~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e 137 (228)
T COG1083 67 -----VFLKRPKELASDR---ASTIDAALHALESFNI-DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE 137 (228)
T ss_pred -----ccccCChhhccCc---hhHHHHHHHHHHHhcc-ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence 1122222211111 3344556666655543 223355554433 4446799999999999999888888876
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
.++-..| .+.+|.|..+.+.+......+. -...|..++.+|+++.+.|.+- +.+ |
T Consensus 138 ~~p~k~f----~~~~~~~~~~~~~~~~~~rrQ~--------------Lpk~Y~~NgaiYi~~~~~l~e~--~~~-----f 192 (228)
T COG1083 138 HHPYKAF----SLNNGEVKPVNEDPDFETRRQD--------------LPKAYRENGAIYINKKDALLEN--DCF-----F 192 (228)
T ss_pred cchHHHH----HhcCCceeecccCCcccccccc--------------chhhhhhcCcEEEehHHHHhhc--Cce-----e
Confidence 5544444 2345888888887754322211 1124677888999999887531 111 1
Q ss_pred hhhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhccCCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+.+...|..+. ..+||++.+||..|+..+..++
T Consensus 193 -----------~~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~~~ 226 (228)
T COG1083 193 -----------IPNTILYEMPEDESIDIDTELDLEIAENLIFLKE 226 (228)
T ss_pred -----------cCCceEEEcCcccccccccHHhHHHHHHHhhhhh
Confidence 44666777765 3779999999999998876544
No 93
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.18 E-value=1.4e-09 Score=106.96 Aligned_cols=109 Identities=15% Similarity=0.222 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
.+.+||||||.|+||+ .+|.|+|++|+ |||+|+++.+... +++|+|+++... .. . +.. .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~----~~~-------~ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-G----TPL-------E 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--hh-h----ccc-------c
Confidence 5789999999999996 59999999997 9999999888764 889999885321 10 0 000 0
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHH
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAH 228 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h 228 (372)
. +.++. +..+..|...+|+.++.... .+.++|+.||+-+ ..+ +..+++.+
T Consensus 219 ~-v~~I~------D~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 N-LPTLP------DRGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred C-CeEEe------CCCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 1 22221 11223799999999987653 3578999999954 544 77777765
No 94
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.13 E-value=5.5e-11 Score=113.00 Aligned_cols=214 Identities=15% Similarity=0.178 Sum_probs=125.2
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhc--------CCCCeEEEEecCChhhHHHHHHHhh
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN--------SNISKIYVLTQFNSASLNRHLSRAY 158 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~--------~Gi~~I~Vvt~~~~~~i~~~l~~~~ 158 (372)
+.+||||||.||||+ ...||+|+||+ |+ |++++.++.+.. .+|..+++...+..+.+.+++....
T Consensus 1 va~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 1 VAVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred CEEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 368999999999994 67999999999 86 999999999976 4577777777788899999998743
Q ss_pred -hcccCCCCCCCcEEEeecc-----cCCCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccC-cc-cHHHH
Q 017422 159 -ASNMGGYKNEGFVEVLAAQ-----QSPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLY-RM-DYERF 224 (372)
Q Consensus 159 -~~~l~~~~~~~~v~il~~~-----~~~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~l 224 (372)
..+.-..+.+..+-.+... ..+..-.| +-|.|+-+... ++.+.+.+.+.+.|.+.|.+. .. | -.+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~D-P~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVAD-PLF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccC-HHH
Confidence 1110000000001011100 00000023 45777754422 333444477888899999854 44 4 336
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCc--eEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEE
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giy 302 (372)
+-.+...+.++.+-+.+-.. ....-|++...++|+ ++++.+-|....... .+. +.............++..+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~-~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~--~~~---~~~~~~~~~~~~~~n~~~~ 229 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTR-NEESGGYRIANINGRVQLLEYDQIKKLLKQKM--VNN---QIPKDIDDAPFFLFNTNNL 229 (266)
T ss_pred HHHHHHcCCCEEEEEEECCC-CCCeEEEEEEecCCCEEEEEeccCCHHHHhcc--ccc---cCcCCCCceeeccceEEEE
Confidence 66777788887765555322 234456555432354 666665443321110 000 0000011123457789999
Q ss_pred EEeHHHHHHHHh
Q 017422 303 VISKDVMLNLLR 314 (372)
Q Consensus 303 v~~~~~l~~ll~ 314 (372)
+|+-+.+.++++
T Consensus 230 ~~~l~~l~~~~~ 241 (266)
T cd04180 230 INFLVEFKDRVD 241 (266)
T ss_pred EEEHHHHHHHHH
Confidence 999988887765
No 95
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.02 E-value=2.3e-08 Score=97.52 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=125.6
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCC--CcchhHHHHHHhhcCC-----------CCeEEEEec-CChhhHHHH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGA--NYRLIDIPVSNCLNSN-----------ISKIYVLTQ-FNSASLNRH 153 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG--~~pLId~~l~~l~~~G-----------i~~I~Vvt~-~~~~~i~~~ 153 (372)
.+|.+||||||.|||| +...||+|+||++ .+|++++.++.+...+ .-.++|+|+ +..+.+.++
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~~ 90 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKF 90 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHHH
Confidence 3589999999999999 6778999999983 2499999999998742 124567777 888999999
Q ss_pred HHHhhhcccCC----CCCCCcEEEeeccc-----CCCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCcc-C
Q 017422 154 LSRAYASNMGG----YKNEGFVEVLAAQQ-----SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHL-Y 217 (372)
Q Consensus 154 l~~~~~~~l~~----~~~~~~v~il~~~~-----~~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l-~ 217 (372)
+.+...+++.. .+.+..+-.+.... ++..-.| +-|.|+-.... ++.+.+.+.+.+.|.+.|.+ .
T Consensus 91 ~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~ 170 (323)
T cd04193 91 FKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILV 170 (323)
T ss_pred HHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCcccc
Confidence 98743333211 00111111111100 0011112 46777644322 33344447889999999994 4
Q ss_pred cccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEE-ECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCce
Q 017422 218 RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (372)
Q Consensus 218 ~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 296 (372)
..---.++-.+.+.++++.+-+.+-.. ....-|.+. .|..-.|+++.|-|........ + ...-..+.
T Consensus 171 ~~~Dp~~lG~~~~~~~~~~~kvv~k~~-~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~--~---------~g~l~f~~ 238 (323)
T cd04193 171 KVADPVFIGFCISKGADVGAKVVRKRY-PTEKVGVVVLVDGKPQVVEYSEISDELAEKRD--A---------DGELQYNA 238 (323)
T ss_pred cccCHHHhHHHHHcCCceEEEEEECCC-CCCceeEEEEECCeEEEEEeecCCHHHHhccC--c---------CCcEeccc
Confidence 333345777788899998875555332 234455543 3433456676665544321100 0 00001233
Q ss_pred EEEEEEEEeHHHHHHHHhh
Q 017422 297 ASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 297 ~~~Giyv~~~~~l~~ll~~ 315 (372)
.++.+.+|+-+.+.++++.
T Consensus 239 ~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 239 GNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred chHhhheeCHHHHHHHHhh
Confidence 4455778898888877543
No 96
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.85 E-value=2.4e-07 Score=94.54 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=122.6
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhcC--------------CCCeEEEEecCChhhH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS--------------NISKIYVLTQFNSASL 150 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~~--------------Gi~~I~Vvt~~~~~~i 150 (372)
-++.+||||||.||||+ ...||+|+||+ |+ ||+++.++.+... .|.-+++...++.+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 45999999999999995 57899999995 55 9999999998864 2344444455888999
Q ss_pred HHHHHHhhhcccCC----CCCCCcEEEeecc------cCCCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCC
Q 017422 151 NRHLSRAYASNMGG----YKNEGFVEVLAAQ------QSPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGD 214 (372)
Q Consensus 151 ~~~l~~~~~~~l~~----~~~~~~v~il~~~------~~~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD 214 (372)
.+++.....+++.. .+..+.+-.+... .++..-.| +-|.|+-.... ++.+...+.+.+.|.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 99998643222211 0111111111100 00000012 35777644322 334444477899999999
Q ss_pred ccC-cccHHHHHHHHHHcCC-CEEEEEEecCCCCCcceeEEEE-CCCCceEEEEecCChhhhhhhccccccccCCchhcc
Q 017422 215 HLY-RMDYERFIQAHRETDA-DITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAK 291 (372)
Q Consensus 215 ~l~-~~dl~~ll~~h~~~~a-diti~~~~~~~~~~~~~g~v~i-d~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~ 291 (372)
.+. ..---.++-.+...++ ++.-.+.+.. +...-|++.. |..-.|+++.|-+...... ..-+++ .
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~--~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g---------~ 328 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRE--DDESVGVFCLKDYEWQVVEYTEINERILNN-DELLTG---------E 328 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCC--CCCceeEEEEeCCcccEEEEeccChhhhhc-ccccCC---------e
Confidence 974 3333456677777777 6544443322 2345576643 3333677887754432210 000001 1
Q ss_pred cCCceEEEEEEEEeHHHHHHHH
Q 017422 292 EMPYIASMGIYVISKDVMLNLL 313 (372)
Q Consensus 292 ~~~~~~~~Giyv~~~~~l~~ll 313 (372)
......++..++|+-+++.++.
T Consensus 329 l~f~~gnI~~h~fsl~fl~~~~ 350 (482)
T PTZ00339 329 LAFNYGNICSHIFSLDFLKKVA 350 (482)
T ss_pred ecccccceEEEEEEHHHHHHHh
Confidence 1124667889999999888764
No 97
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=2.2e-05 Score=71.45 Aligned_cols=117 Identities=22% Similarity=0.339 Sum_probs=81.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChh--hHHHHHHHhhhcccCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSA--SLNRHLSRAYASNMGG 164 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~--~i~~~l~~~~~~~l~~ 164 (372)
+++.+||-|.=.+||| .-|.|+|++|+ |||+++|++++.+. +++|+|.|+...+ .+..+..+
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~-------- 66 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS-------- 66 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH--------
Confidence 3455566666667888 57999999997 99999999999975 6999999985442 34444433
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHH-HHHHHHHHHHhcCCceEEEEcCCcc-Cccc-HHHHHHHHHHcCCCE
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTAD-AVRQYLWLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHRETDADI 235 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~-al~~a~~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~~~~adi 235 (372)
.| +.++ +|..+ -|......++..+.+.++=+.||.- .+.+ +...++.|.+.|+|-
T Consensus 67 ---~G-~~vf------------rGs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 67 ---HG-FYVF------------RGSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred ---cC-eeEe------------cCCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 12 2232 45443 4445555555555667788899994 4555 678899999998873
No 98
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.46 E-value=9.6e-06 Score=72.19 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCccceecCC--CcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCC
Q 017422 110 RAKPAVPLGA--NYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQ 187 (372)
Q Consensus 110 ~pKpLlpIgG--~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~ 187 (372)
.+|.+++++| + |||+++++.+. ..+++|+|+++.+ +.. .. . + +.++.. .. . ..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~-~~~----~~-----~------~-~~~i~d-~~-~----g~ 57 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPG-QPL----PE-----L------P-APVLRD-EL-R----GL 57 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCC-ccc----cc-----C------C-CCEecc-CC-C----CC
Confidence 5899999998 7 99999999876 4589999999754 211 00 0 0 223321 11 1 15
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHHHcC
Q 017422 188 GTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHRETD 232 (372)
Q Consensus 188 Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~~~~ 232 (372)
|...++..++........+.++|+.||+-+ ..+ +.++++.+...+
T Consensus 58 gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 58 GPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 777777766654422245789999999944 544 777777654443
No 99
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.43 E-value=4.4e-05 Score=73.71 Aligned_cols=250 Identities=12% Similarity=0.132 Sum_probs=146.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc----CCC-CeEEEEecC-ChhhHHHHHHHhhhcc
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQF-NSASLNRHLSRAYASN 161 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~----~Gi-~~I~Vvt~~-~~~~i~~~l~~~~~~~ 161 (372)
.++.+|+||||.||||+ .+.||.|+||...++++|+.++.+.. .|. =-++|.|++ .++...+++.+. ...
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~-~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKY-AGV 77 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHc-CCC
Confidence 35789999999999995 46899999997667999999998764 333 346777775 556788888873 210
Q ss_pred cCCCCCCCcEEEeeccc----------------CCCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCcc
Q 017422 162 MGGYKNEGFVEVLAAQQ----------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRM 219 (372)
Q Consensus 162 l~~~~~~~~v~il~~~~----------------~~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~~ 219 (372)
... +..+.... ++....| +-|.|+-.... ++.+.+.+.+.+.+.+.|.+...
T Consensus 78 -----~~~-v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~ 151 (300)
T cd00897 78 -----NVD-IHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGAT 151 (300)
T ss_pred -----ccC-eEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccccccc
Confidence 111 11111000 0011123 35666533321 23333447889999999997653
Q ss_pred cHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEE-ECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEE
Q 017422 220 DYERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (372)
Q Consensus 220 dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 298 (372)
-=-.++-.|.++++++++=+.+-.. +...-|.+. .|..-+|+++.+-|........ + .......+
T Consensus 152 ~Dp~~lg~~~~~~~~~~~evv~Kt~-~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~--~-----------~~~~~~~n 217 (300)
T cd00897 152 VDLRILNHMVDNKAEYIMEVTDKTR-ADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK--S-----------IKKFKIFN 217 (300)
T ss_pred CCHHHHHHHHhcCCceEEEEeecCC-CCCcccEEEEECCEEEEEEeccCCHHHHHhhc--C-----------cccceEEE
Confidence 2244778888899998875544222 123445543 3433357777776654321100 0 11234778
Q ss_pred EEEEEEeHHHHHHHHhhh---CC----------CCCCh-hhhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHH
Q 017422 299 MGIYVISKDVMLNLLRDK---FP----------GANDF-GSEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANL 361 (372)
Q Consensus 299 ~Giyv~~~~~l~~ll~~~---~~----------~~~~~-~~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~ 361 (372)
++.++|+-+.|.++++.. .| ..+-+ .+-++-.++..-.+..++.++. .+.-+.+..|++-.+-
T Consensus 218 t~n~~~~l~~L~~~~~~~~~~lp~h~~~K~v~p~~~~~qlE~~i~da~~~~~~~~~~eV~R~rF~PvKn~~dll~~~s 295 (300)
T cd00897 218 TNNLWVNLKAVKRVVEENALDLEIIVNPKTVDGGLNVIQLETAVGAAIKNFDNALGVNVPRSRFLPVKTTSDLLLVRS 295 (300)
T ss_pred EeEEEEEHHHHHHHHHhccCCCCeeecccccCCCCCEEEeHhHhhhHHHhCCCcEEEEEChhhcCCCCChHHHHhhhh
Confidence 999999999888775431 11 11111 1122222333233566666653 4888888888876543
No 100
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.43 E-value=4e-06 Score=76.64 Aligned_cols=177 Identities=23% Similarity=0.299 Sum_probs=104.9
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
.|||+|.|.++|+ .-|.|.+++|+ |||+|+|+.+.+++ +++|+|.| .++.+.+.+.. +. .
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~-~g---------~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE-YG---------A 61 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH-TT---------S
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH-cC---------C
Confidence 3899999999999 57999999997 99999999999975 79999998 66777766655 21 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCC-EEEEEEecCC--
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDAD-ITVAALPMDE-- 244 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~ad-iti~~~~~~~-- 244 (372)
.+..... +. ..++...+..+..+..+ ..+.++.+.||..+ +. .+.++++.+.+..++ +.-...+...
T Consensus 62 ~v~~~~~----~~---~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 133 (217)
T PF02348_consen 62 KVIFRRG----SL---ADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDPVGSSV 133 (217)
T ss_dssp EEEE--T----TS---SSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEEECSHH
T ss_pred eeEEcCh----hh---cCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhccccccccchh
Confidence 1322221 11 13444333333333332 33478888999944 44 489999999998876 3222333210
Q ss_pred --CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHH
Q 017422 245 --KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD 307 (372)
Q Consensus 245 --~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~ 307 (372)
...... ....+.++....+.+.+.....+... . -...+....|+|.+...
T Consensus 134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 134 EIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRNPE-----------E-FKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp HHTSTTST-EEEECTTSBEEEEESSESSECHHHHC-----------S-SSSTEEEEEEEEEEEHH
T ss_pred hcccccce-EEEeccccchhhcccCCCcccccccc-----------c-ccccccccccccccccc
Confidence 011111 12334455555565554432221100 0 00135778999999986
No 101
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.11 E-value=0.00026 Score=72.19 Aligned_cols=258 Identities=12% Similarity=0.131 Sum_probs=147.2
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc----CCC-CeEEEEecCC-hhhHHHHHHHhhhc
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFN-SASLNRHLSRAYAS 160 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~----~Gi-~~I~Vvt~~~-~~~i~~~l~~~~~~ 160 (372)
-.++.+|.||||.||||+- +.||.|+|+...++++|..++++.. .|. =-.+|.++++ ++...+++.. |..
T Consensus 77 L~k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~~ 152 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YTN 152 (469)
T ss_pred HhcEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cCC
Confidence 4678899999999999963 5799999996556999999887754 343 2347777754 4567778876 321
Q ss_pred -ccCC-CCCCCcE-EEeeccc-----C--CCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCcccHHHH
Q 017422 161 -NMGG-YKNEGFV-EVLAAQQ-----S--PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERF 224 (372)
Q Consensus 161 -~l~~-~~~~~~v-~il~~~~-----~--~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~l 224 (372)
.... .|.++.+ .+..... . ..+..| +-|.|+-.... ++.+.+.+.+.+.|.+.|.+...-=-.+
T Consensus 153 ~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~ 232 (469)
T PLN02474 153 SNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKI 232 (469)
T ss_pred CccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHH
Confidence 1000 0010000 0000000 0 001124 45666643322 3344445789999999999765322447
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEE-ECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEE
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYV 303 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv 303 (372)
+..+..+++++++=+.+-... ...-|.+. .|..-+|+++.+-|........ ........+++.++
T Consensus 233 lg~~~~~~~e~~~ev~~Kt~~-d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~-------------~~~kf~~fNtnn~w 298 (469)
T PLN02474 233 LNHLIQNKNEYCMEVTPKTLA-DVKGGTLISYEGKVQLLEIAQVPDEHVNEFK-------------SIEKFKIFNTNNLW 298 (469)
T ss_pred HHHHHhcCCceEEEEeecCCC-CCCccEEEEECCEEEEEEEecCCHHHHHhhc-------------ccccceeeeeeeEE
Confidence 788888999987765543221 23345443 3333357777776654321100 01124588999999
Q ss_pred EeHHHHHHHHhhhC--------CCC-CC--hh--hhhHHHhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHh
Q 017422 304 ISKDVMLNLLRDKF--------PGA-ND--FG--SEVIPGATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLG 362 (372)
Q Consensus 304 ~~~~~l~~ll~~~~--------~~~-~~--~~--~dvi~~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~ 362 (372)
|+-+.+.++++... +.. +. ++ +-++-.++..-.+..++.++. .+.-+.+..|+.-+...
T Consensus 299 ~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsd 371 (469)
T PLN02474 299 VNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSD 371 (469)
T ss_pred EEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHH
Confidence 99998887764321 000 10 00 112223333334566666653 48888888777766653
No 102
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.99 E-value=0.00046 Score=69.78 Aligned_cols=257 Identities=19% Similarity=0.204 Sum_probs=139.4
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc----CCC-CeEEEEec-CChhhHHHHHHHhhh
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQ-FNSASLNRHLSRAYA 159 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~----~Gi-~~I~Vvt~-~~~~~i~~~l~~~~~ 159 (372)
...++.+|+||||.||||+ ...||.|+||.....++|..++.+.. .|+ --++|.+. ...+.+.+++.. |.
T Consensus 53 ~~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yf 128 (420)
T PF01704_consen 53 ALGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YF 128 (420)
T ss_dssp HTTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GC
T ss_pred hhCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hc
Confidence 3467899999999999996 35799999997666899999887764 343 34566776 456788889888 42
Q ss_pred cccCC---CCCCCcEEEeecccC-C----C-----CCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCccc
Q 017422 160 SNMGG---YKNEGFVEVLAAQQS-P----E-----NPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMD 220 (372)
Q Consensus 160 ~~l~~---~~~~~~v~il~~~~~-~----~-----~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~~d 220 (372)
. +.. .|.++.+-.+..... + . ...| +-|.|+-.... ++.+.+.+.+.+.|.+.|.|...-
T Consensus 129 g-~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~ 207 (420)
T PF01704_consen 129 G-LDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVV 207 (420)
T ss_dssp G-SSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT
T ss_pred C-CCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCccccc
Confidence 1 111 011111111111100 0 0 0113 34777633322 233334477899999999976543
Q ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEE-ECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEE
Q 017422 221 YERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASM 299 (372)
Q Consensus 221 l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 299 (372)
=..++..+.+.++++.+-+.+-.. ....-|++. .|..-+|+++.+-|...... .. ...+....++
T Consensus 208 Dp~~lG~~~~~~~~~~~evv~Kt~-~dek~Gvl~~~~G~~~vvEysqip~~~~~~-~~------------~~~~~~~Fnt 273 (420)
T PF01704_consen 208 DPVFLGYMIEKNADFGMEVVPKTS-PDEKGGVLCRYDGKLQVVEYSQIPKEHMAE-FK------------DIKGFLLFNT 273 (420)
T ss_dssp -HHHHHHHHHTT-SEEEEEEE-CS-TTTSSEEEEEETTEEEEEEGGGS-HHGHHH-HT------------STTTSBEEEE
T ss_pred CHHHHHHHHhccchhheeeeecCC-CCCceeEEEEeCCccEEEEeccCCHHHHHh-hh------------ccccceEEEe
Confidence 345788888899998776666322 234445554 33223455555544332111 00 1122457788
Q ss_pred EEEEEeHHHHHHHHhhhCCC--------C-----C-----ChhhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHH
Q 017422 300 GIYVISKDVMLNLLRDKFPG--------A-----N-----DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNAN 360 (372)
Q Consensus 300 Giyv~~~~~l~~ll~~~~~~--------~-----~-----~~~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An 360 (372)
|-.+|+-+.+.++++..... . + .| +-.+-..+..-.+..++.++ ..+.-+-+..|++..+
T Consensus 274 nNi~~~l~~l~~~~~~~~~~Lp~h~a~Kki~~~d~~~~~~q~-Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~ 352 (420)
T PF01704_consen 274 NNIWFSLDFLKRLLERDELQLPIHVAKKKIPYVDNGIKVIQF-ETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVR 352 (420)
T ss_dssp EEEEEEHHHHHHHHHTTTCCS-EEEEEEESSEECTEEEEEEE-ECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHH
T ss_pred ceeeEEHHHHHHHHHhccccCccEEcchhcccccCCccEEee-hhhhhchHhhccCcEEEEEcHHHcCCccccCcceeec
Confidence 88899999998877542100 0 0 01 11122222222345555664 4699999999988876
Q ss_pred Hh
Q 017422 361 LG 362 (372)
Q Consensus 361 ~~ 362 (372)
-.
T Consensus 353 Sd 354 (420)
T PF01704_consen 353 SD 354 (420)
T ss_dssp ST
T ss_pred cc
Confidence 53
No 103
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.89 E-value=0.00099 Score=68.37 Aligned_cols=208 Identities=13% Similarity=0.175 Sum_probs=120.2
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC--CCcchhHHHHHHhhcC--------------CC-CeEEEEec-CChhh
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNS--------------NI-SKIYVLTQ-FNSAS 149 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg--G~~pLId~~l~~l~~~--------------Gi-~~I~Vvt~-~~~~~ 149 (372)
.++.+|+||||.||||+ ...||.|++|+ .++++++..++.+... ++ =-++|.|. .+.+.
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~ 191 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEA 191 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHH
Confidence 56889999999999996 36799999875 2249999999876431 11 13477777 45677
Q ss_pred HHHHHHHhhhcccCCCCCCCcEEEeeccc-------------CCCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEE
Q 017422 150 LNRHLSRAYASNMGGYKNEGFVEVLAAQQ-------------SPENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLV 210 (372)
Q Consensus 150 i~~~l~~~~~~~l~~~~~~~~v~il~~~~-------------~~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lv 210 (372)
..+++.....+++. ...|.++.... ++..-.| +-|.|+-.... ++.+.+.+.+.+.+
T Consensus 192 T~~ff~~~~~FGl~----~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v 267 (493)
T PLN02435 192 TRKFFESHKYFGLE----ADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDC 267 (493)
T ss_pred HHHHHHhCCCCCCC----ccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 88888863222221 11122221100 0111112 46777643322 33333447788999
Q ss_pred EcCCcc-CcccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEE-CCCCc--eEEEEecCChhhhhhhccccccccCC
Q 017422 211 LAGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEGR--IIEFSEKPKGEQLKAMKVDTTILGLD 286 (372)
Q Consensus 211 l~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i-d~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~ 286 (372)
.+.|.+ ...---.++-.+...+.++.+-+.+-.. +...-|++.. +.+|+ |++..|-+......... +++
T Consensus 268 ~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~-~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~-~~g----- 340 (493)
T PLN02435 268 YGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQ-QTG----- 340 (493)
T ss_pred EecccccccccCHHHHHHHHhcCCceEEEeeecCC-CCCceeEEEEecCCCCEEEEEeccCCHHHHhccCc-ccc-----
Confidence 999994 4333355777888889998765544221 2345576643 34554 66666644332110000 001
Q ss_pred chhcccCCceEEEEEEEEeHHHHHHHH
Q 017422 287 DERAKEMPYIASMGIYVISKDVMLNLL 313 (372)
Q Consensus 287 ~~~~~~~~~~~~~Giyv~~~~~l~~ll 313 (372)
.-..+..++++++|+-++|.++.
T Consensus 341 ----~L~~~~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 341 ----RLRYCWSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred ----ccccchhhHHHhhccHHHHHHHH
Confidence 11235667889999999988764
No 104
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.85 E-value=0.00082 Score=65.31 Aligned_cols=213 Identities=15% Similarity=0.166 Sum_probs=118.8
Q ss_pred EEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhcCC---------CCeEEEEec-CChhhHHHHHHHh
Q 017422 91 LGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNSN---------ISKIYVLTQ-FNSASLNRHLSRA 157 (372)
Q Consensus 91 ~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~~G---------i~~I~Vvt~-~~~~~i~~~l~~~ 157 (372)
.+|+||||.||||+ ..-||-++||+ |+ +++++.++++.... .--++|.|. .+++...+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 47999999999996 36899999994 55 99999999886521 134578887 4557788888763
Q ss_pred hhcccCC----CCCCCcEEEee-cccC----CCCC---CC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccC-c
Q 017422 158 YASNMGG----YKNEGFVEVLA-AQQS----PENP---NW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLY-R 218 (372)
Q Consensus 158 ~~~~l~~----~~~~~~v~il~-~~~~----~~~~---~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~-~ 218 (372)
..+++.. .|.++.+-.+. .... .+++ .| +-|.|+-.... ++.+.+.+.+.+.|..-|... .
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 2222211 01111111111 0000 0111 12 46776643322 233444467788888888744 3
Q ss_pred ccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEE--CCCCc--e--EEEEecCChhhhhhhccccccccCCch-hcc
Q 017422 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR--I--IEFSEKPKGEQLKAMKVDTTILGLDDE-RAK 291 (372)
Q Consensus 219 ~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i--d~~g~--V--~~f~eKp~~~~~~~~~v~~~~~~~~~~-~~~ 291 (372)
.-.--++-.+.+.++++..-+.+. .+...-|++.. ..+|+ | ++..|=+........ +. | +.. ...
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~--~~---g-~~~~~~~ 229 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGK--DD---G-DVDDKTG 229 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeC--CCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCC--CC---C-Ccccccc
Confidence 334556666777888877655552 23456676642 23443 4 666554432111000 00 0 000 001
Q ss_pred cCCceEEEEEEEEeHHHHHHHHhh
Q 017422 292 EMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 292 ~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
...+..++++++|+-+.+.+.++.
T Consensus 230 ~s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 230 FSPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred cccCCCeeeeEEEeHHHHHHHHhh
Confidence 124577899999998888777764
No 105
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.0022 Score=64.78 Aligned_cols=179 Identities=20% Similarity=0.320 Sum_probs=109.9
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc----CCC-CeEEEEecCChhhHHHHHHH-hhh
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNI-SKIYVLTQFNSASLNRHLSR-AYA 159 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~----~Gi-~~I~Vvt~~~~~~i~~~l~~-~~~ 159 (372)
-..++.+|+||||.||||+- .-||.+++|+.+++++|.+++.+.. .++ -..+|.+.++.++-..++.. .|.
T Consensus 102 ~~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~ 178 (472)
T COG4284 102 KLGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYF 178 (472)
T ss_pred hcCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhc
Confidence 35679999999999999964 4799999999445999999887654 344 34677888888665555544 332
Q ss_pred cccC---C-CCCCCc-EEEeecccCC----CC--CCC-CCCcHH---HHHH--HHHHHHhcCCceEEEEcCCccCc-ccH
Q 017422 160 SNMG---G-YKNEGF-VEVLAAQQSP----EN--PNW-FQGTAD---AVRQ--YLWLFEEHNVLEFLVLAGDHLYR-MDY 221 (372)
Q Consensus 160 ~~l~---~-~~~~~~-v~il~~~~~~----~~--~~~-~~Gta~---al~~--a~~~l~~~~~~~~Lvl~gD~l~~-~dl 221 (372)
. +. . .|.+.. ..++.....| ++ ..| +.|+|+ +|.. .++.+.+.+.+.+.|.+.|.+.- .|+
T Consensus 179 ~-~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 179 G-LDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred C-CCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 1 10 0 011111 1011111110 11 134 467665 3332 22223345788899999999654 454
Q ss_pred HHHHHHHHHcCCCEEEEEEecCCCCCcceeEEE-ECCCCceEEEEecCCh
Q 017422 222 ERFIQAHRETDADITVAALPMDEKRATAFGLMK-IDEEGRIIEFSEKPKG 270 (372)
Q Consensus 222 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~f~eKp~~ 270 (372)
.++.++..++.++++=+..-.. ....-|++. .|..-+|+++.+-|..
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~-a~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTK-ADEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred -HHHHHHHhcCcceeEEEeeccc-ccccceEEEEeCCceEEEEEecCChh
Confidence 4778888889988765544222 245567665 6777789999887764
No 106
>PLN02830 UDP-sugar pyrophosphorylase
Probab=97.24 E-value=0.054 Score=57.35 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=119.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhcC-----------CC-CeEEEEecC-ChhhHH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS-----------NI-SKIYVLTQF-NSASLN 151 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~~-----------Gi-~~I~Vvt~~-~~~~i~ 151 (372)
.++.+|+||||.||||+ ..-||.++|++ |+ ++++..++.+... ++ --++|.|.+ +++...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 57899999999999996 35799999983 44 9999999987543 11 346888885 556778
Q ss_pred HHHHHhhhcccCC----CCCCCcEEEeecc------cC--CCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcC
Q 017422 152 RHLSRAYASNMGG----YKNEGFVEVLAAQ------QS--PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAG 213 (372)
Q Consensus 152 ~~l~~~~~~~l~~----~~~~~~v~il~~~------~~--~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~g 213 (372)
+++.+...+++.. .|.++.+-.+... .+ +..-.| +-|.|+-.... ++.+.+.+.+.+.+...
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 8887732222211 0111111111100 00 000112 45666533222 23344447788999999
Q ss_pred CccC-cccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEE--CCCCc----eEEEEecCChhhhhhhccccccccCC
Q 017422 214 DHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI--DEEGR----IIEFSEKPKGEQLKAMKVDTTILGLD 286 (372)
Q Consensus 214 D~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i--d~~g~----V~~f~eKp~~~~~~~~~v~~~~~~~~ 286 (372)
|... ..-.-.++-.+...+.++.+-+.+- .+...-|++.. ..||+ |+++.|.+..... ..+..+-+ .
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~~--a~~p~g~l--~ 356 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGREMVINVEYNQLDPLLRA--TGHPDGDV--N 356 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCeeeEEEeecccCHHHHh--ccCCCccc--c
Confidence 9833 3334778888899999987766653 22344555543 23444 3355554432111 00000000 0
Q ss_pred chhcccCCceEEEEEEEEeHHHHHHHHhh
Q 017422 287 DERAKEMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 287 ~~~~~~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
... ....+-.++...+++-..+.++|++
T Consensus 357 ~~~-~~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 357 DET-GYSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc-ccccCCCCceeeEeeHHHHHHHHHh
Confidence 000 0112334778888998877777764
No 107
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=97.23 E-value=0.014 Score=52.44 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=58.2
Q ss_pred cchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHH
Q 017422 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (372)
Q Consensus 121 ~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l 200 (372)
+|||+++++.+..+++++++|+++. +.+.+++.. + + +.++. + +. .|.+.+++.++..+
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----------~-v~~i~--~----~~--~G~~~si~~al~~~ 87 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----------G-APVLR--D----PG--PGLNNALNAALAEA 87 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----------C-CEEEe--c----CC--CCHHHHHHHHHHHh
Confidence 4999999999999988889988863 344434322 1 1 23332 1 11 38999999998766
Q ss_pred HhcCCceEEEEcCCccC-c-ccHHHHHHHHH
Q 017422 201 EEHNVLEFLVLAGDHLY-R-MDYERFIQAHR 229 (372)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~ 229 (372)
.. ..+.++++.||+-+ . ..++++++.+.
T Consensus 88 ~~-~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 88 RE-PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hc-cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 43 23579999999943 4 45888887653
No 108
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.15 E-value=0.15 Score=41.58 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=67.6
Q ss_pred ceecCCCcchhHHHHHHhhcCC--CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~G--i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
++|..++.+++.+.++.+.+.+ ..+|+|+.+...+...+.+...... ....+.+. . +. ..|.+.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~-~~----~~g~~~ 67 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRVI---N-EE----NQGLAA 67 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEEE---e-cC----CCChHH
Confidence 4566666789999999999987 7899999988777777776653321 01112221 1 11 268888
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHH
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (372)
++..++... ..+.++++.+|.++..+ +..++..+.
T Consensus 68 ~~~~~~~~~---~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 68 ARNAGLKAA---RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHh---cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 888887666 35789999999999877 555534433
No 109
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=94.44 E-value=0.13 Score=57.01 Aligned_cols=133 Identities=20% Similarity=0.266 Sum_probs=94.2
Q ss_pred eEEEEcCCccCccc--HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCC--CceEEEEecCChhhhhhhcccccc
Q 017422 207 EFLVLAGDHLYRMD--YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE--GRIIEFSEKPKGEQLKAMKVDTTI 282 (372)
Q Consensus 207 ~~Lvl~gD~l~~~d--l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~--g~V~~f~eKp~~~~~~~~~v~~~~ 282 (372)
.+||..||.+...+ +.+ -.++|+++.....+.+-.+..|++..|.+ +++..|..||..+...+..
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 69999999876644 222 23467777777666566789999999887 6888999999987653221
Q ss_pred ccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC------CCCChhhhhHHHhhhC---------CCcEEEEEEcC-e
Q 017422 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP------GANDFGSEVIPGATSI---------GMRVQAYLYDG-Y 346 (372)
Q Consensus 283 ~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~------~~~~~~~dvi~~li~~---------g~~V~a~~~~g-~ 346 (372)
+....+..+|+|+|+.+.+..+++.... ...++.+|++..|-.+ +.++.....++ .
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 2234688999999999988766655321 1234567777664221 56778888765 6
Q ss_pred EeeCCCHHHHHH
Q 017422 347 WEDIGTIEAFYN 358 (372)
Q Consensus 347 w~DIgT~ed~~~ 358 (372)
++-+||-.+|..
T Consensus 295 F~H~GTs~E~l~ 306 (974)
T PRK13412 295 FYHYGTSRELIS 306 (974)
T ss_pred eEEecCcHHHhc
Confidence 999999988885
No 110
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=92.60 E-value=2.6 Score=37.67 Aligned_cols=191 Identities=13% Similarity=0.120 Sum_probs=96.3
Q ss_pred eecCCCcchhHHHHHHhhcCC---CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~G---i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
+|.-+....|...|+.+.+.- --+|+||-....+...+.+.. +.. ....+.++... .+ .|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~-~~~------~~~~i~~~~~~---~n----~G~~~ 68 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE-LAK------EYPRVRLIVRP---GK----RGLGS 68 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH-HHH------hCCceEEEecC---CC----CChHH
Confidence 455444345667777766532 356777665433434433333 211 01123443221 22 68888
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCceEEEEecCCh
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKG 270 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~V~~f~eKp~~ 270 (372)
|+..++.... .+.++++.+|..+..+ +..+++.....+.+++++...........++ ....+.. +..
T Consensus 69 a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~--------~~~~~~~-~~~ 136 (224)
T cd06442 69 AYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWG--------LKRKLIS-RGA 136 (224)
T ss_pred HHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCc--------HHHHHHH-HHH
Confidence 8887776553 4678899999988766 8888887666666665443221110000000 0000000 000
Q ss_pred hhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEEE
Q 017422 271 EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 343 (372)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~ 343 (372)
...... .+ ........+|..+++++++.++..........+..|++-++...|.++...++
T Consensus 137 ~~~~~~-----~~-------~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~ 197 (224)
T cd06442 137 NLLARL-----LL-------GRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPI 197 (224)
T ss_pred HHHHHH-----Hc-------CCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCe
Confidence 000000 00 00112345667788999998776222223333445777777777877776654
No 111
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=92.01 E-value=0.45 Score=48.24 Aligned_cols=140 Identities=21% Similarity=0.328 Sum_probs=89.2
Q ss_pred ceEEEEcCCccCc-ccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCC---------ceEEEEecCChhhhhh
Q 017422 206 LEFLVLAGDHLYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEG---------RIIEFSEKPKGEQLKA 275 (372)
Q Consensus 206 ~~~Lvl~gD~l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g---------~V~~f~eKp~~~~~~~ 275 (372)
..++|..+|.++. .+ ...+.. .+.++++...|.+..-++..|+...|+++ .|.+|..||..+..++
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~~---~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLIDW---DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCc-cccCCC---CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 4689999995443 33 222221 23678888888776667899999999998 8999999999876531
Q ss_pred hccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC------------C----CCChhhhhHHHhhh------
Q 017422 276 MKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP------------G----ANDFGSEVIPGATS------ 333 (372)
Q Consensus 276 ~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~------------~----~~~~~~dvi~~li~------ 333 (372)
.. ...+.......+|++.|+.+..+.++..... + ..+...|++..|..
T Consensus 130 ~~----------av~~~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~~~t~e~ 199 (414)
T PF07959_consen 130 SG----------AVLPDGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGPDATEEY 199 (414)
T ss_pred CC----------cccCCCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcCCccccC
Confidence 11 0012233466889999998877665432110 0 11234555555542
Q ss_pred -------------------------CCCcEEEEEEc-CeEeeCCCHHHHHHH
Q 017422 334 -------------------------IGMRVQAYLYD-GYWEDIGTIEAFYNA 359 (372)
Q Consensus 334 -------------------------~g~~V~a~~~~-g~w~DIgT~ed~~~A 359 (372)
++.++.+...+ +.++-+||..+|..-
T Consensus 200 ~~~~~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l~~~~F~H~GTs~E~L~~ 251 (414)
T PF07959_consen 200 PENTSNVLKEESELREARQKLWKLLRGTPLNVVPLPNGKFYHFGTSREYLEH 251 (414)
T ss_pred ccccCCCcchhHHHHHHHHHHHHHhhhccccccccCCceEEEecCCHHHHHh
Confidence 14566666665 568889998877654
No 112
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=91.84 E-value=1.1 Score=40.10 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCceEEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFS 265 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~V~~f~ 265 (372)
.|.+.++..++.... .+.++++.+|..+..+ +.++++...+.+.++++.......... .........+.
T Consensus 68 ~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~-------~~~~~~~~~~~ 137 (211)
T cd04188 68 RGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAA-------VVKRSWLRNLL 137 (211)
T ss_pred CCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcc-------cccccHHHHHH
Confidence 688899988876653 4788999999988866 888888766667776655433211000 00000000000
Q ss_pred ecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEEEc
Q 017422 266 EKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD 344 (372)
Q Consensus 266 eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~~ 344 (372)
.+...... ..+.+.. -.-...|..+|+++++.++..........+..|++-.+.+.|.++.-+++.
T Consensus 138 ~~~~~~~~------~~~~~~~-------~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~ 203 (211)
T cd04188 138 GRGFNFLV------RLLLGLG-------IKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVR 203 (211)
T ss_pred HHHHHHHH------HHHcCCC-------CcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcc
Confidence 00000000 0000100 011235778999998887653322222233467787888778777666653
No 113
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.77 E-value=2.8 Score=34.76 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=69.9
Q ss_pred ceecCCCcchhHHHHHHhhcC--CCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~--Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
++|.-++...|..+|+.+.+. ...+|+|+-....+...+.+...... ...++++... ++ .|-+.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~-------~~~i~~i~~~---~n----~g~~~ 68 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAES-------DPNIRYIRNP---EN----LGFSA 68 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCC-------STTEEEEEHC---CC----SHHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccc-------cccccccccc---cc----ccccc
Confidence 356655546778888877765 45778777775555555555553211 1125555321 22 57777
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEe
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALP 241 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~ 241 (372)
++..++.... .+.++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 69 ~~n~~~~~a~---~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 69 ARNRGIKHAK---GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccc---eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 8877776663 4688999999998877 899999988877776554443
No 114
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=91.16 E-value=1.3 Score=40.86 Aligned_cols=134 Identities=17% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCceEEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFS 265 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~V~~f~ 265 (372)
.|-+.|+..++... ..+.++++.+|..++.+ +.++++...+.++++++....... .. + .+. .+.
T Consensus 79 ~G~~~a~n~g~~~a---~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~---~~---~----~~~--~~~ 143 (243)
T PLN02726 79 LGLGTAYIHGLKHA---SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKG---GG---V----HGW--DLR 143 (243)
T ss_pred CCHHHHHHHHHHHc---CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCC---CC---c----CCc--cHH
Confidence 68888888776544 35788899999988876 788888777777776554321110 00 0 000 000
Q ss_pred ecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEEEc
Q 017422 266 EKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD 344 (372)
Q Consensus 266 eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~~ 344 (372)
.+- ........ ...+++. . -.-...|..+++++++.++..........+..|++-.+...|.++.-+++.
T Consensus 144 r~~-~~~~~~~~-~~~~~~~------~-~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~ 213 (243)
T PLN02726 144 RKL-TSRGANVL-AQTLLWP------G-VSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPIT 213 (243)
T ss_pred HHH-HHHHHHHH-HHHHhCC------C-CCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcE
Confidence 000 00000000 0000000 0 012345677889999987754322222223457777777768888877664
No 115
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=91.03 E-value=3.3 Score=37.42 Aligned_cols=112 Identities=24% Similarity=0.265 Sum_probs=63.4
Q ss_pred eEEEEEe---CCCCCCCCCCccC-CCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 90 VLGIILG---GGAGTRLYPLTKK-RAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 90 m~aIILA---aG~GtRL~plT~~-~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
|.+||+- ++.=|||.|.-.. --+. +. +-|+-.++..+... +.+|.|++. .+.+....
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~---~~--laML~dvi~Al~~~-~~~i~Vvtp--de~~~~~a----------- 61 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEEREN---FA--LAMLVDVLGALAGV-LGEITVVTP--DEEVLVPA----------- 61 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHH---HH--HHHHHHHHHHhhhh-cCCceEEcC--ChHhhhhc-----------
Confidence 4566663 3566888775321 1111 11 35777788888776 789999985 23222111
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHHHHcCCCEEE
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITV 237 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi 237 (372)
.. .+++.. + +--.|+.++++.+.. + ..++|+.+|+ +. ..+++++++..+ ++|+++
T Consensus 62 --~~-~~vl~d------~----dLN~Ai~aa~~~~~~-p-~~v~vvmaDLPLl~~~~i~~~~~~~~--d~dvvi 118 (210)
T COG1920 62 --TK-LEVLAD------P----DLNTAINAALDEIPL-P-SEVIVVMADLPLLSPEHIERALSAAK--DADVVI 118 (210)
T ss_pred --cc-ceeeec------c----chHHHHHHHHhhCCC-C-cceEEEecccccCCHHHHHHHHHhcC--CCcEEE
Confidence 11 134321 1 222467777766643 2 6699999999 44 456888887543 356543
No 116
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=88.79 E-value=11 Score=33.97 Aligned_cols=106 Identities=12% Similarity=0.124 Sum_probs=64.3
Q ss_pred eecCCCcchhHHHHHHhhcCCC----CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi----~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta 190 (372)
+|.-++.+.|...|+.+.+... -+|+|+-+...+...+.+..... ....+.++.. .+ .|-+
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-------~~~~v~~i~~----~~----~~~~ 70 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-------KDPRIRLIDN----PK----RIQS 70 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-------cCCeEEEEeC----CC----CCch
Confidence 4555544677778888876543 37887776555555555544211 1112444321 11 4556
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 191 ~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
.++..++... ..+.++++.+|..+..+ +.++++.+.+.+.+++..
T Consensus 71 ~a~N~g~~~a---~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 116 (249)
T cd02525 71 AGLNIGIRNS---RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGG 116 (249)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEec
Confidence 6777776554 35788999999988777 888888766666555433
No 117
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=88.46 E-value=9 Score=32.90 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=64.0
Q ss_pred eecCCCcchhHHHHHHhhcC----CCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcH
Q 017422 115 VPLGANYRLIDIPVSNCLNS----NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~----Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta 190 (372)
+|.......|..+|+.+.+. ...+|+|+-+...+...+.+... ... ...+.++... ++ .|.+
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~-~~~------~~~~~~~~~~---~n----~G~~ 68 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAREL-AAR------VPRVRVIRLS---RN----FGKG 68 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHH-HHh------CCCeEEEEcc---CC----CCcc
Confidence 34443334556666666654 35777777765444444444432 111 1112333221 22 6888
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEE
Q 017422 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (372)
Q Consensus 191 ~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (372)
.++..++.... .+.++++.+|..+..+ +..++......+.++++..
T Consensus 69 ~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 69 AAVRAGFKAAR---GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 88887776553 4788999999988777 8888887666667665444
No 118
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=87.87 E-value=9 Score=34.47 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=62.6
Q ss_pred ceecCCCc-chhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 114 AVPLGANY-RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 114 LlpIgG~~-pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
++|.-+.. ..|..+|+.+.+....+|+||.....+.....+..... ...+.++.. ++ .|-+.+
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--------~~~~~v~~~----~~----~g~~~a 68 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--------YGGIFVITV----PH----PGKRRA 68 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--------CCcEEEEec----CC----CChHHH
Confidence 34555554 67888888887765678888887666655555432111 111334321 12 577788
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHH
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (372)
+..++... ..+.++++.+|..+..+ ++++++.+.
T Consensus 69 ~n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 69 LAEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 87666544 45789999999999887 788887765
No 119
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.81 E-value=17 Score=30.15 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=63.5
Q ss_pred ceecCCCcchhHHHHHHhhcC--CCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~--Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
++|.-++..+|...++.+.+. ...+|+|+-....+...+.+...+. .+.++. .+++ .|.+.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~---~~~~----~g~~~ 64 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIR---NGEN----LGFGA 64 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEe---cCCC----cChHH
Confidence 356555557888888888775 2457777776555555555544211 133332 1122 68888
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcC
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (372)
++..++... ..+.++++..|..+..+ +..+++.+.+..
T Consensus 65 a~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 65 GNNQGIREA---KGDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HhhHHHhhC---CCCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 888777665 45778899999988766 778877655543
No 120
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=85.23 E-value=0.25 Score=46.09 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
.|.++.+++.+ ++.++|||.|| ++|++||..+++..
T Consensus 31 ~~~~~~~~~~~----~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 31 PESIKKFGSGH----SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred chheEEEecCC----cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 68888888744 89999999999 99999999999763
No 121
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=85.11 E-value=20 Score=29.53 Aligned_cols=101 Identities=20% Similarity=0.144 Sum_probs=60.3
Q ss_pred eecCCCcchhHHHHHHhhcCC--CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~G--i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|.-++...|..+|+.+.+.. ..+|+|+-....+...+.+...... ....+.++... ++ .|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~------~~~~~~~~~~~---~~----~g~~~~ 69 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL------YIRRVLVVRDK---EN----GGKAGA 69 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc------ccceEEEEEec---cc----CCchHH
Confidence 455554467888888888764 4577777665555444444442110 00112222111 12 688888
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHc
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (372)
+..++... ..+.++++.+|.++..+ +..++..+.+.
T Consensus 70 ~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 70 LNAGLRHA---KGDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHhc---CCCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 88777655 45789999999988876 67775555443
No 122
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=82.41 E-value=60 Score=32.97 Aligned_cols=209 Identities=17% Similarity=0.200 Sum_probs=107.9
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc----CCCCe-EEEEecCChhhH-HHHHHHhhhcc
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN----SNISK-IYVLTQFNSASL-NRHLSRAYASN 161 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~----~Gi~~-I~Vvt~~~~~~i-~~~l~~~~~~~ 161 (372)
+++..+=|-||.||-|+- .-||.+++|-.....+|-++.+... .+++- .++...|+.+.- ..++...+...
T Consensus 102 ~KLavlKLNGGlGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 457777899999999964 5799999998667888876665443 34533 456666766544 44444433222
Q ss_pred cCC-CCC-CCcEEEeecccC--------CCCCCC-CCCcHHH---HHHH--HHHHHhcCCceEEEEcCCccCc-ccHHHH
Q 017422 162 MGG-YKN-EGFVEVLAAQQS--------PENPNW-FQGTADA---VRQY--LWLFEEHNVLEFLVLAGDHLYR-MDYERF 224 (372)
Q Consensus 162 l~~-~~~-~~~v~il~~~~~--------~~~~~~-~~Gta~a---l~~a--~~~l~~~~~~~~Lvl~gD~l~~-~dl~~l 224 (372)
+.. .|. ..|-.|....+. .+.+.| +-|.|+- ++.. ++.+-..+.+.++|.+.|.+-- .|+. +
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-I 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-H
Confidence 100 000 011111111111 122457 4566653 3321 2222234778999999999874 5644 4
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCceE--EEEecCChhhhhhhccccccccCCchhcccCCceEEEEEE
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRII--EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIY 302 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~V~--~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giy 302 (372)
++.....+....+=+++-... ...-|.+ ++-+|++. ++..-|......-.. .+...+.++.-.
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~a-DvKgGtL-i~y~G~lrlLEiaQVP~ehv~eFkS-------------~kkFkifNTNNl 322 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTRA-DVKGGTL-IQYEGKLRLLEIAQVPKEHVDEFKS-------------IKKFKIFNTNNL 322 (498)
T ss_pred HHHHhcCCCceEEEecccchh-hcccceE-EeecCEEEEEEeccCChhHhhhhcc-------------ceeEEEeccCCe
Confidence 455555566655555442211 1222332 34456544 443334331110000 012345566666
Q ss_pred EEeHHHHHHHHhh
Q 017422 303 VISKDVMLNLLRD 315 (372)
Q Consensus 303 v~~~~~l~~ll~~ 315 (372)
+++-..+++++++
T Consensus 323 WinLkavKrlve~ 335 (498)
T KOG2638|consen 323 WINLKAVKKLVEE 335 (498)
T ss_pred EEehHHHHHHhhc
Confidence 7777777777765
No 123
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.65 E-value=29 Score=30.67 Aligned_cols=107 Identities=7% Similarity=0.039 Sum_probs=60.6
Q ss_pred ceecCCCcchhHHHHHHhhcCCC----CeEEEEecCChhhHHHHHH-HhhhcccCCCCCCCcEEEeecccCCCCCCCCCC
Q 017422 114 AVPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLS-RAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~Gi----~~I~Vvt~~~~~~i~~~l~-~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~G 188 (372)
++|..+....|..+|+.+..... -+|+|+-....+...+.+. .... ....+.++.... .. ..|
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-------~~~~v~~~~~~~-~~----~~g 69 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK-------PNFQLKILNNSR-VS----ISG 69 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC-------CCcceEEeeccC-cc----cch
Confidence 35666554678888888765422 3677666544444444443 1110 111244443221 11 156
Q ss_pred cHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCE
Q 017422 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (372)
Q Consensus 189 ta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adi 235 (372)
-+.++..++... ..+.++++.+|.+...+ ++++++.+.+.+..+
T Consensus 70 ~~~a~n~g~~~~---~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 114 (229)
T cd04192 70 KKNALTTAIKAA---KGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGL 114 (229)
T ss_pred hHHHHHHHHHHh---cCCEEEEECCCcccCHHHHHHHHHHhhcCCCcE
Confidence 666766665443 45788999999988877 788888666554443
No 124
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=81.32 E-value=38 Score=33.72 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=60.3
Q ss_pred chhHHHHHHhhcCCC---CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSNI---SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (372)
Q Consensus 122 pLId~~l~~l~~~Gi---~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~ 198 (372)
..|...|+.+.+... -+|+||-+...+...+.+.+.... . .....+.++.....+ .+| .|-+.|+.++..
T Consensus 53 ~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~-~---~~~~~i~vi~~~~~~--~g~-~Gk~~A~n~g~~ 125 (384)
T TIGR03469 53 DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARA-Y---GRGDRLTVVSGQPLP--PGW-SGKLWAVSQGIA 125 (384)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHh-c---CCCCcEEEecCCCCC--CCC-cchHHHHHHHHH
Confidence 455666676665422 377777765444333333321100 0 001124554322111 223 577778877766
Q ss_pred HHHhcC--CceEEEEcCCccCccc-HHHHHHHHHHcCCCEE
Q 017422 199 LFEEHN--VLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 199 ~l~~~~--~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adit 236 (372)
...+.. .+.++++.+|.....+ +.++++...+.+.+++
T Consensus 126 ~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 126 AARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred HHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 554221 5778999999998877 7899888777666543
No 125
>PRK10073 putative glycosyl transferase; Provisional
Probab=79.89 E-value=37 Score=33.12 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=62.7
Q ss_pred eecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|+-+....|..+|+.+.+.-. -+|+||-....+...+.+.. +.. .+..+.++. + ++ .|-+.|
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~-~~~------~~~~i~vi~--~--~n----~G~~~a 76 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKH-YAE------NYPHVRLLH--Q--AN----AGVSVA 76 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHH-HHh------hCCCEEEEE--C--CC----CChHHH
Confidence 4444333678888888876533 25666544333322222322 211 112255543 2 23 677777
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
.-.++... ..+.++++.+|.++..+ +..+++...+.+.++++.
T Consensus 77 rN~gl~~a---~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 77 RNTGLAVA---TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHhC---CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 77766554 45788899999988777 788888777777776543
No 126
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=79.36 E-value=60 Score=31.04 Aligned_cols=100 Identities=16% Similarity=0.073 Sum_probs=57.8
Q ss_pred chhHHHHHHhhcCCCCeE-E-EEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSNISKI-Y-VLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I-~-Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~ 199 (372)
..+..++..+.+...... + ++-+...+...+.+.... ..-|.++. ..+| .|-+++.-.+...
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---------~~~v~~i~---~~~N----lG~agg~n~g~~~ 79 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---------FPNVRLIE---NGEN----LGFAGGFNRGIKY 79 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---------CCcEEEEE---cCCC----ccchhhhhHHHHH
Confidence 566677777777654333 3 234433444444444421 11144542 2345 6666666655544
Q ss_pred HHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEE
Q 017422 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (372)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (372)
......+.+++++-|++...+ +.++++.+.+.+..+.+
T Consensus 80 a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 80 ALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred HhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 432222269999999888877 89999998877665443
No 127
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=78.34 E-value=59 Score=30.37 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=58.6
Q ss_pred hhHHHHHHhhcCCCCeEEEEecCC--hhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHH
Q 017422 123 LIDIPVSNCLNSNISKIYVLTQFN--SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLF 200 (372)
Q Consensus 123 LId~~l~~l~~~Gi~~I~Vvt~~~--~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l 200 (372)
.|...|+.+.+. ..+|+||=+-. .+.+.+.+.. ...+.++.. +++ .|-+.|...++...
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-----------~~~i~~i~~---~~N----~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-----------GQKIALIHL---GDN----QGIAGAQNQGLDAS 69 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-----------CCCeEEEEC---CCC----cchHHHHHHHHHHH
Confidence 556666666654 46777776542 2233332221 112555532 233 79999999888766
Q ss_pred HhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEE
Q 017422 201 EEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (372)
Q Consensus 201 ~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (372)
.+...+.++++..|.....+ +..+++...+.+..+.+
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~ 107 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACA 107 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEE
Confidence 44456889999999988866 77788776554324433
No 128
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=78.31 E-value=54 Score=29.87 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=95.7
Q ss_pred chhHHHHHHhhc-CCCCeEEEEecCChh----hHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHH
Q 017422 122 RLIDIPVSNCLN-SNISKIYVLTQFNSA----SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 196 (372)
Q Consensus 122 pLId~~l~~l~~-~Gi~~I~Vvt~~~~~----~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a 196 (372)
|++-|.+..... .|.+-=+|++...+. .+.+.++..|.. +. |-+.. . .++ +|-+.|...+
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~-------d~-i~l~p--R--~~k---lGLgtAy~hg 83 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE-------DN-ILLKP--R--TKK---LGLGTAYIHG 83 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC-------Cc-EEEEe--c--cCc---ccchHHHHhh
Confidence 566666666544 566444444443332 334444443321 11 32321 1 222 7888888888
Q ss_pred HHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCceEEEEecCChhhhhh
Q 017422 197 LWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKA 275 (372)
Q Consensus 197 ~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~ 275 (372)
+...+ .+-++++.+|.-..+- +.+|++..++.+.|++..+.... +|-|-++.-|.+.-..-+
T Consensus 84 l~~a~---g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~--------------~ggV~gW~mkRk~IS~gA 146 (238)
T KOG2978|consen 84 LKHAT---GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAG--------------GGGVYGWDMKRKIISRGA 146 (238)
T ss_pred hhhcc---CCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcC--------------CCceecchhhHHHHhhhh
Confidence 76653 3456677899876644 88999988888889887765422 222222222222111111
Q ss_pred hccccccccCCchhcccCCceEEEEEEEE-eHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEEE
Q 017422 276 MKVDTTILGLDDERAKEMPYIASMGIYVI-SKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLY 343 (372)
Q Consensus 276 ~~v~~~~~~~~~~~~~~~~~~~~~Giyv~-~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~ 343 (372)
+.....+|+.... --+|.|-+ +++++..++++.......|--|++-++-..+..|.-+++
T Consensus 147 n~la~~ll~~~~s--------dltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPi 207 (238)
T KOG2978|consen 147 NFLARILLNPGVS--------DLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPI 207 (238)
T ss_pred HHHHHHhccCCCc--------cCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecce
Confidence 1111122211100 01333333 677888777776555455556777777666666666655
No 129
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=77.51 E-value=56 Score=29.68 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=61.1
Q ss_pred eecCCCcchhHHHHHHhhcCCC----CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi----~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta 190 (372)
+|.-+..-.|...|+.+.+... -+|+||.....+...+.+.. +.. . ....++.... .+ ..|.+
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~-~~~------~-~~~~i~~~~~--~~---~~G~~ 73 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA-LRL------P-SIFRVVVVPP--SQ---PRTKP 73 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH-hcc------C-CCeeEEEecC--CC---CCchH
Confidence 4444332456667777765422 25666655444444444443 110 0 0122222111 11 15788
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEE
Q 017422 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (372)
Q Consensus 191 ~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (372)
.++..++... ..+.++++.+|.....+ +.++++.+.+.+.++.++.
T Consensus 74 ~a~n~g~~~a---~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 74 KACNYALAFA---RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred HHHHHHHHhc---CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 8888877654 35788899999998877 7888888765556665444
No 130
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=77.50 E-value=45 Score=28.58 Aligned_cols=49 Identities=12% Similarity=0.021 Sum_probs=36.0
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAA 239 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~ 239 (372)
.|.+.++..++... ..+.++++.+|..+..+ +..+++. .+.+.++++..
T Consensus 66 ~G~~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g~ 115 (181)
T cd04187 66 FGQQAALLAGLDHA---RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYGV 115 (181)
T ss_pred CCcHHHHHHHHHhc---CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEEE
Confidence 68888888776654 35788999999998876 7888876 45566655443
No 131
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=76.88 E-value=33 Score=33.61 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=73.2
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH---cCCCEEEEEEecCCCCCcceeEEEECCCCceE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE---TDADITVAALPMDEKRATAFGLMKIDEEGRII 262 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~---~~aditi~~~~~~~~~~~~~g~v~id~~g~V~ 262 (372)
.|.+.|+..++... ..+.++++.+|..++.+ +..+++...+ .+.+++++....... .. ..... .
T Consensus 148 ~G~~~A~~~Gi~~a---~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~--~~---~~~~~-~--- 215 (333)
T PTZ00260 148 KGKGGAVRIGMLAS---RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVD--SD---VVAKR-K--- 215 (333)
T ss_pred CChHHHHHHHHHHc---cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeecccccc--Cc---ccccC-c---
Confidence 68999998887644 34778899999988765 7777776543 556665554321100 00 00000 0
Q ss_pred EEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEE
Q 017422 263 EFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYL 342 (372)
Q Consensus 263 ~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~ 342 (372)
+..+- ....... +-..++|.. -.-...|..+|+++++..++.....+...|..|++-.+...|.+|.-++
T Consensus 216 -~~r~~-~~~~~~~-l~~~~~~~~-------i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvP 285 (333)
T PTZ00260 216 -WYRNI-LMYGFHF-IVNTICGTN-------LKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVP 285 (333)
T ss_pred -HHHHH-HHHHHHH-HHHHHcCCC-------cccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEc
Confidence 00000 0000000 000011110 0122457889999998876544333333455677777777677777777
Q ss_pred EcCeEee
Q 017422 343 YDGYWED 349 (372)
Q Consensus 343 ~~g~w~D 349 (372)
+. |.+
T Consensus 286 v~--~~~ 290 (333)
T PTZ00260 286 VN--WTE 290 (333)
T ss_pred ee--eEE
Confidence 74 544
No 132
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=76.73 E-value=52 Score=31.15 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=61.9
Q ss_pred eecCCCc-chhHHHHHHhhcCC----CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCc
Q 017422 115 VPLGANY-RLIDIPVSNCLNSN----ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (372)
Q Consensus 115 lpIgG~~-pLId~~l~~l~~~G----i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gt 189 (372)
+|.-+.. ..|..+|+.+.+.- ..+|+||-+...+.....+...+... ....+.++.. +.+ .|-
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~-----~~~~v~vi~~---~~n----~G~ 71 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKK-----YLPKVKVLRL---KKR----EGL 71 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhh-----cCCcEEEEEc---CCC----CCH
Confidence 4555554 57777888776532 13788887644443333332211000 1112555432 122 677
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCC
Q 017422 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (372)
Q Consensus 190 a~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad 234 (372)
+.+.-.++... ..+.++++++|.....+ +..+++...+....
T Consensus 72 ~~a~N~g~~~A---~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 72 IRARIAGARAA---TGDVLVFLDSHCEVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred HHHHHHHHHHc---cCCEEEEEeCCcccCccHHHHHHHHHHhCCCe
Confidence 77777666554 35788999999988877 88899887665443
No 133
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=75.83 E-value=48 Score=33.72 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=54.6
Q ss_pred chhHHHHHHhhcCC--CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (372)
Q Consensus 122 pLId~~l~~l~~~G--i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~ 199 (372)
.-|..+|+.+.+.. --+|+|+.....+...+.+.+... ....+.++... .+ .|-++++..+...
T Consensus 88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-------~~~~v~vv~~~---~n----~Gka~AlN~gl~~ 153 (444)
T PRK14583 88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-------EDPRLRVIHLA---HN----QGKAIALRMGAAA 153 (444)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-------hCCCEEEEEeC---CC----CCHHHHHHHHHHh
Confidence 44566666666542 236777765444443333333111 01114454321 22 6888888887654
Q ss_pred HHhcCCceEEEEcCCccCccc-HHHHHHHHHHc
Q 017422 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (372)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (372)
. ..|.++++.+|.+.+.| +..+++.+.+.
T Consensus 154 a---~~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 154 A---RSEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred C---CCCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 3 45789999999999887 77787766543
No 134
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=74.72 E-value=66 Score=29.12 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=56.7
Q ss_pred eecCCCcchhHHHHHHhhcCCC----CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi----~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta 190 (372)
+|.-+.-..|...|+.+..... -+|+|+.....+...+.+.. +.. . .+.++.. +.+ .|-+
T Consensus 35 ip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~~~------~--~v~~i~~---~~~----~g~~ 98 (251)
T cd06439 35 IPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIARE-YAD------K--GVKLLRF---PER----RGKA 98 (251)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHH-Hhh------C--cEEEEEc---CCC----CChH
Confidence 3444433455566666555322 26777776555544444443 211 0 1334321 122 6888
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH
Q 017422 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (372)
Q Consensus 191 ~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (372)
.++..+..... .+.++++.+|.+...+ +.++++....
T Consensus 99 ~a~n~gi~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 99 AALNRALALAT---GEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred HHHHHHHHHcC---CCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 88887776553 4789999999998877 7888877643
No 135
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.48 E-value=38 Score=29.54 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=59.3
Q ss_pred eecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|.-++...|..+|+.+.+.-. .+|+|+-+...+...+.+.... . ... +.++.. +++ .|.+.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-~------~~~-i~~~~~---~~n----~g~~~~ 67 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-D------LDN-IVYLRL---PEN----LGGAGG 67 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-C------CCc-eEEEEC---ccc----cchhhH
Confidence 3444443678888888876432 4677776654555555555421 1 111 333321 223 577777
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHH
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (372)
+..++........+.++++..|.++..+ +..+++...
T Consensus 68 ~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 68 FYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 7766655433345778899999999877 677777655
No 136
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=74.02 E-value=58 Score=28.18 Aligned_cols=104 Identities=17% Similarity=0.215 Sum_probs=57.5
Q ss_pred eecCCCc-chhHHHHHHhhcCCC--CeEEEEecCChh-hHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcH
Q 017422 115 VPLGANY-RLIDIPVSNCLNSNI--SKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTA 190 (372)
Q Consensus 115 lpIgG~~-pLId~~l~~l~~~Gi--~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta 190 (372)
+|.-+.. ..|..+|+.+.+.-. -+|+|+-+-..+ .+...+.. +.. ....+.++.. +.+ .|.+
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~-~~~------~~~~~~~~~~---~~~----~g~~ 72 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKK-YAA------QDPRIKVVFR---EEN----GGIS 72 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHH-HHh------cCCCEEEEEc---ccC----CCHH
Confidence 4444444 556677777765432 266666543322 33333332 211 1111434321 122 5777
Q ss_pred HHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHH-HHcCCCE
Q 017422 191 DAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH-RETDADI 235 (372)
Q Consensus 191 ~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h-~~~~adi 235 (372)
.++-.++... ..+.++++..|..+..+ +..+++.+ ...+.++
T Consensus 73 ~a~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~ 116 (202)
T cd04184 73 AATNSALELA---TGEFVALLDHDDELAPHALYEVVKALNEHPDADL 116 (202)
T ss_pred HHHHHHHHhh---cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCE
Confidence 8877776654 34778899999988877 88888876 3344443
No 137
>PRK11204 N-glycosyltransferase; Provisional
Probab=71.89 E-value=68 Score=32.02 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=54.6
Q ss_pred chhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWL 199 (372)
Q Consensus 122 pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~ 199 (372)
..|..+++.+.+..- -+|+|+-....+...+.+.+. .. ....+.++... ++ .|-++++..+...
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~-~~------~~~~v~~i~~~---~n----~Gka~aln~g~~~ 132 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRL-AA------QIPRLRVIHLA---EN----QGKANALNTGAAA 132 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHH-HH------hCCcEEEEEcC---CC----CCHHHHHHHHHHH
Confidence 445566666665432 367777654444433333321 11 01114444311 22 6888888887765
Q ss_pred HHhcCCceEEEEcCCccCccc-HHHHHHHHHHc
Q 017422 200 FEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (372)
Q Consensus 200 l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (372)
. ..+.++++.+|.+...| +.++++...+.
T Consensus 133 a---~~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 133 A---RSEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred c---CCCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 4 35789999999998877 78888776543
No 138
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=71.84 E-value=4.1 Score=41.66 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=48.1
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCC--cchhHHHHHHhhc----------CCC-CeEEEEec-CChhhHH
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN--YRLIDIPVSNCLN----------SNI-SKIYVLTQ-FNSASLN 151 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~--~pLId~~l~~l~~----------~Gi-~~I~Vvt~-~~~~~i~ 151 (372)
....+.++++|||.|||++- ..||-+.|+|.. ..|.++..+.++. -|. -..||.|. .-.+...
T Consensus 94 ~~~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~ 170 (477)
T KOG2388|consen 94 AEGKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATL 170 (477)
T ss_pred hcCcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhH
Confidence 34568899999999999964 579999999843 2477777665432 121 12355554 5667777
Q ss_pred HHHHHhhhcc
Q 017422 152 RHLSRAYASN 161 (372)
Q Consensus 152 ~~l~~~~~~~ 161 (372)
+|+.....++
T Consensus 171 ~~f~~~~~FG 180 (477)
T KOG2388|consen 171 EYFESHKYFG 180 (477)
T ss_pred hHHhhcCCCC
Confidence 7887643333
No 139
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=69.37 E-value=74 Score=27.42 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=62.0
Q ss_pred ceecCCCcchhHHHHHHhhcCCC----CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCc
Q 017422 114 AVPLGANYRLIDIPVSNCLNSNI----SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~Gi----~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gt 189 (372)
++|.-+....|..+|+.+.+... -+|+|+.....+...+.+.. +. .. +... ..+.+ .|.
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-~~--------~~-~~~~---~~~~~----~gk 64 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-AG--------AT-VLER---HDPER----RGK 64 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-cC--------Ce-EEEe---CCCCC----CCH
Confidence 45665544677788888776432 35777765544544444332 11 01 2111 11112 588
Q ss_pred HHHHHHHHHHHH--hcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEE
Q 017422 190 ADAVRQYLWLFE--EHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 190 a~al~~a~~~l~--~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adit 236 (372)
+.++..++.... ....+.++++.+|....++ +..+++.+. .+.++.
T Consensus 65 ~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~v 113 (183)
T cd06438 65 GYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFA-AGARVV 113 (183)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCee
Confidence 888888876653 2235678899999999887 677777664 455543
No 140
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=68.64 E-value=87 Score=27.93 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=51.2
Q ss_pred chhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFE 201 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~ 201 (372)
..|..+|+.+.+. ..+|+|+=+...+... .... + ....+.++.. +.+ .|-+.|...++....
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~s~~~~~-~~~~-~--------~~~~i~~i~~---~~n----~G~~~a~N~g~~~a~ 72 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNSSGNDIE-LRLR-L--------NSEKIELIHL---GEN----LGIAKALNIGIKAAL 72 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCCCCccHH-HHhh-c--------cCCcEEEEEC---CCc----eehHHhhhHHHHHHH
Confidence 5677778877776 5677776543222222 1111 1 0111444432 223 688888887776654
Q ss_pred hcCCceEEEEcCCccCccc-HHHHH
Q 017422 202 EHNVLEFLVLAGDHLYRMD-YERFI 225 (372)
Q Consensus 202 ~~~~~~~Lvl~gD~l~~~d-l~~ll 225 (372)
..+.+.++++.+|.....+ +..++
T Consensus 73 ~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 73 ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 3234789999999998877 67774
No 141
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=64.69 E-value=1.4e+02 Score=30.40 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=53.7
Q ss_pred chhHHHHHHhhcCCC--C--eEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSNI--S--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (372)
Q Consensus 122 pLId~~l~~l~~~Gi--~--~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~ 197 (372)
..|...|+.+.+... + +|+|+-+...+...+.+.+.... ...+.+.... .+ .|-++|+..++
T Consensus 62 ~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~-------~~~v~v~~~~---~~----~Gka~AlN~gl 127 (439)
T TIGR03111 62 DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNE-------FPGLSLRYMN---SD----QGKAKALNAAI 127 (439)
T ss_pred HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHh-------CCCeEEEEeC---CC----CCHHHHHHHHH
Confidence 566667777766432 2 46666554334433333321110 0113332211 12 68888988887
Q ss_pred HHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHc
Q 017422 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (372)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (372)
... ..+.++++.+|.+.+.| +.++++...+.
T Consensus 128 ~~s---~g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 128 YNS---IGKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred HHc---cCCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 654 35778899999999877 78888776543
No 142
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.01 E-value=95 Score=26.39 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=58.7
Q ss_pred eecCCCcchhHHHHHHhhcCCCC--eEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi~--~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|.-+....|+.+|+.+.+.... +|+|+-+...+...+.+.. +.. ..+.+.. . .+ .|.+.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~-~~~--------~~~~~~~--~--~~----~g~~~a 66 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKK-YED--------KITYWIS--E--PD----KGIYDA 66 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHH-hHh--------hcEEEEe--c--CC----cCHHHH
Confidence 44444435788888888765544 6777654434444444443 111 0122221 1 22 688888
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHc-CCCE
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET-DADI 235 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~-~adi 235 (372)
+..++... ..+.++++.+|..+..+ +..++...... +.++
T Consensus 67 ~n~~~~~a---~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~ 108 (202)
T cd06433 67 MNKGIALA---TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDV 108 (202)
T ss_pred HHHHHHHc---CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccE
Confidence 88777654 35788899999988765 77777554443 3443
No 143
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=62.72 E-value=1e+02 Score=26.64 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred ceecCCCc--chhHHHHHHhhcCC--CCeEEEEecCC-hhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCC
Q 017422 114 AVPLGANY--RLIDIPVSNCLNSN--ISKIYVLTQFN-SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (372)
Q Consensus 114 LlpIgG~~--pLId~~l~~l~~~G--i~~I~Vvt~~~-~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~G 188 (372)
++|+-.+. ..|+.+|+.+.+.. -.+|+||-... .+...+.+.. +.. ... +.++.. +.+ .|
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~-~~~------~~~-i~~i~~---~~n----~G 67 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEE-FKR------KLP-LKVVPL---EKN----RG 67 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHH-HHh------cCC-eEEEEc---Ccc----cc
Confidence 45665331 27888888887753 25666665433 3344433333 221 111 344322 122 68
Q ss_pred cHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH
Q 017422 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (372)
Q Consensus 189 ta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (372)
.+.+...++... ..+.++++.+|.++..+ ++.+++...+
T Consensus 68 ~~~a~N~g~~~a---~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 68 LGKALNEGLKHC---TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 888887776544 35778899999988877 7888887644
No 144
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=59.88 E-value=1.2e+02 Score=26.48 Aligned_cols=102 Identities=10% Similarity=-0.023 Sum_probs=48.9
Q ss_pred eecCCCcchhHHHHHHhhcC--CCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~--Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|+-+..+-|...|+.+.+. .--+|+||.....+...+.+..... . .....+.++... .+.. ..+.+.+
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~-~----~~~~~~~~~~~~---~~~g-~~~~~~~ 77 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIA-K----YPNVDARLLIGG---EKVG-INPKVNN 77 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHH-H----CCCCcEEEEecC---CcCC-CCHhHHH
Confidence 44444334566677777653 2246777665444333333332100 0 011113333221 1100 0122334
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHH
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (372)
+..+.... ..+.++++.+|.....+ +..+++..
T Consensus 78 ~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 78 LIKGYEEA---RYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHhC---CCCEEEEECCCceEChhHHHHHHHHh
Confidence 44444332 45788899999988777 77777664
No 145
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=58.61 E-value=1e+02 Score=30.39 Aligned_cols=102 Identities=7% Similarity=0.018 Sum_probs=50.7
Q ss_pred ecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHH
Q 017422 116 PLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAV 193 (372)
Q Consensus 116 pIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al 193 (372)
|+-+..+.|...|+.+.+..- -+|+|+.....+...+.+.+ +... +.+..+.++.. . ++..| .+...++
T Consensus 48 P~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~-~~~~----~p~~~i~~v~~-~--~~~G~-~~K~~~l 118 (373)
T TIGR03472 48 PLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRR-LRAD----FPDADIDLVID-A--RRHGP-NRKVSNL 118 (373)
T ss_pred ECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHH-HHHh----CCCCceEEEEC-C--CCCCC-ChHHHHH
Confidence 333333556667776665432 46776655433332233322 1100 01111444421 1 12111 2344455
Q ss_pred HHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHH
Q 017422 194 RQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (372)
Q Consensus 194 ~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (372)
.++. +....|.++++.+|.....| ++.++....
T Consensus 119 ~~~~---~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 119 INML---PHARHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred HHHH---HhccCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 4443 33346789999999988888 777776654
No 146
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=58.50 E-value=1.3e+02 Score=26.33 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=58.2
Q ss_pred ceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
++|.-.....|..+|+.+.+.. --+|+|+-....+...+.+. +.. ....+.++.... .+ ...|-+.+
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~--~~~------~~~~v~~i~~~~--~~--~~~Gk~~a 69 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR--LAI------TDSRVHLLRRHL--PN--ARTGKGDA 69 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh--hee------cCCcEEEEeccC--Cc--CCCCHHHH
Confidence 3555544467888888887653 23567766644454444443 100 011144443211 11 12688899
Q ss_pred HHHHHHHHHhc--------CCceEEEEcCCccCccc-HHHHHHHH
Q 017422 193 VRQYLWLFEEH--------NVLEFLVLAGDHLYRMD-YERFIQAH 228 (372)
Q Consensus 193 l~~a~~~l~~~--------~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (372)
+..++...... ..+.++++.+|....++ +..+....
T Consensus 70 ln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 70 LNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 98888765421 12468899999999877 66655443
No 147
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=58.12 E-value=1.3e+02 Score=26.77 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=56.1
Q ss_pred ceecCCCcc-hhHHHHHHhhcCCC--CeEEEEecCChh-hH----HHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCC
Q 017422 114 AVPLGANYR-LIDIPVSNCLNSNI--SKIYVLTQFNSA-SL----NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNW 185 (372)
Q Consensus 114 LlpIgG~~p-LId~~l~~l~~~Gi--~~I~Vvt~~~~~-~i----~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~ 185 (372)
++|.-+..+ +|...++.+.+... -+|+|+-+...+ .. .++..+ +. .. +.++... ++
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~~--------~~-i~~i~~~---~~--- 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-LG--------ER-FRFFHVE---PL--- 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-hC--------Cc-EEEEEcC---CC---
Confidence 356665433 78888888877542 467777654332 22 222222 11 01 3333221 12
Q ss_pred CCC-cHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHH
Q 017422 186 FQG-TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHR 229 (372)
Q Consensus 186 ~~G-ta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~ 229 (372)
.| .++++..++..... ..+.++++..|.+...+ +..++....
T Consensus 67 -~G~~~~a~n~g~~~a~~-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 -PGAKAGALNYALERTAP-DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred -CCCchHHHHHHHHhcCC-CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 34 47778777665531 24678999999988877 788887653
No 148
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=55.18 E-value=1.5e+02 Score=26.18 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=60.0
Q ss_pred eecCCCc-chhHHHHHHhhcCCC-C---eEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCc
Q 017422 115 VPLGANY-RLIDIPVSNCLNSNI-S---KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (372)
Q Consensus 115 lpIgG~~-pLId~~l~~l~~~Gi-~---~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gt 189 (372)
+|.-+.. .+|...|+.+.+... . +|+|+-....+...+.+... .. .. .+.++.. +.+. .+.
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~-~~------~~-~~~~~~~---~~~~---~~~ 72 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAEL-GV------EY-GYRYLTR---PDNR---HAK 72 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHh-hc------cc-CceEEEe---CCCC---CCc
Confidence 4554431 367788888877543 2 68887766555555555442 11 01 1223321 1221 234
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 190 a~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
++++..++... ..+.++++..|.+.+.+ +..+++...+ +.++.++
T Consensus 73 ~~~~n~~~~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~~v 118 (234)
T cd06421 73 AGNLNNALAHT---TGDFVAILDADHVPTPDFLRRTLGYFLD-DPKVALV 118 (234)
T ss_pred HHHHHHHHHhC---CCCEEEEEccccCcCccHHHHHHHHHhc-CCCeEEE
Confidence 56666665544 45788999999999877 7778776654 3344333
No 149
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=55.01 E-value=2.1e+02 Score=27.79 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=35.9
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITV 237 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi 237 (372)
.|-+.|+..++... ..+.++++.+|.-++++ +.++++... .+.|++.
T Consensus 76 ~G~~~A~~~G~~~A---~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV~ 123 (325)
T PRK10714 76 YGQHSAIMAGFSHV---TGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVVG 123 (325)
T ss_pred CCHHHHHHHHHHhC---CCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEEE
Confidence 58888998887554 35788899999998865 888988764 5677653
No 150
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=52.24 E-value=1.6e+02 Score=25.72 Aligned_cols=95 Identities=16% Similarity=0.057 Sum_probs=54.3
Q ss_pred ceecCCCcchhHHHHHHhhcCC--CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNSN--ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~G--i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
++|+-+....|...|+.+.+.- ..+|+|+-+...+...+.+.. .. +.++. .+ .|-+.
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-----------~~-~~~~~-----~~----~g~~~ 62 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-----------AG-VVVIS-----SP----KGRAR 62 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-----------CC-eEEEe-----CC----cCHHH
Confidence 3566555457777887777642 356777655433333333332 01 22321 11 46666
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcC
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (372)
+...++... ..+.++++..|..+..+ +.+++......+
T Consensus 63 a~n~g~~~a---~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 63 QMNAGAAAA---RGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHhc---cCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 666565544 35788999999988766 677655554433
No 151
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=51.09 E-value=2.3e+02 Score=27.37 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cccc-HHHHHHHHH-HcCCCEEEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHR-ETDADITVAA 239 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~-~~~aditi~~ 239 (372)
.|.+.|+..++... ..+.++++.+|.. ++.+ +.++++... ..+.+++.++
T Consensus 101 ~Gkg~A~~~g~~~a---~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAAT---TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhc---CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 68888888776543 3577899999996 6665 788888765 3455665554
No 152
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=45.09 E-value=24 Score=31.53 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=51.7
Q ss_pred ceecCCCcchhHHHHHHhhcC--CCCeEEEEecCChhhH---HHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCC
Q 017422 114 AVPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASL---NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQG 188 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~--Gi~~I~Vvt~~~~~~i---~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~G 188 (372)
++|..+..+.|...|+.+... .--+|+|+.....+.. .+.+...+.. ..+.++... .+. -..+
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~--------~~v~vi~~~---~~~-g~~~ 73 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPR--------VRVRVIRRP---RNP-GPGG 73 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG---------GEEEEE-------H-HHHH
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCC--------CceEEeecC---CCC-Ccch
Confidence 455555546777788877764 2256666665444333 2233332321 114454321 110 0023
Q ss_pred cHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCC
Q 017422 189 TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDAD 234 (372)
Q Consensus 189 ta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ad 234 (372)
.+.++..++... ..+.++++..|.+...+ +..+++.+...+..
T Consensus 74 k~~a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 74 KARALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp HHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 456676666554 35789999999998877 78888877333333
No 153
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.14 E-value=2.9e+02 Score=27.33 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=65.6
Q ss_pred eecCCCcc-hhHHHHHHhhcCCCC--eEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 115 VPLGANYR-LIDIPVSNCLNSNIS--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 115 lpIgG~~p-LId~~l~~l~~~Gi~--~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
+|.-+.-+ .++..++.+.+.... +|+|+.....+...+.+...... . .. .+.+... ... ..|.++
T Consensus 60 iP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~-~----~~-~~~~~~~---~~~---~~gK~~ 127 (439)
T COG1215 60 IPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAE-Y----GP-NFRVIYP---EKK---NGGKAG 127 (439)
T ss_pred EecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhh-c----Cc-ceEEEec---ccc---CccchH
Confidence 34334435 888999999887543 78888776666666666653221 0 00 1233211 111 268889
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCC
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDA 233 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 233 (372)
++..++... ..+-++++.+|++...| +.+++......+.
T Consensus 128 al~~~l~~~---~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 128 ALNNGLKRA---KGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred HHHHHHhhc---CCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 998887655 35778899999999888 7888877654433
No 154
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=43.26 E-value=2e+02 Score=24.19 Aligned_cols=99 Identities=10% Similarity=0.037 Sum_probs=54.2
Q ss_pred eecCCCcchhHHHHHHhhcC--CCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNS--NISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~--Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|.-++-..|..+|+.+.+. ...+|+|+-....+...+.+...... .....+.+. ....+ .|.+.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~---~~~~~----~~~~~~ 70 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQ-----FPIPIKHVW---QEDEG----FRKAKI 70 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhh-----cCCceEEEE---cCCcc----hhHHHH
Confidence 45554445778888888763 23577777665444444444331110 011112222 11111 345556
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHH
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAH 228 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h 228 (372)
...+.... ..+.++++.+|.+...+ +..+++.+
T Consensus 71 ~n~g~~~a---~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 71 RNKAIAAA---KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHh---cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 65555544 35788999999988777 77777665
No 155
>PRK10018 putative glycosyl transferase; Provisional
Probab=43.15 E-value=3e+02 Score=26.15 Aligned_cols=96 Identities=13% Similarity=0.184 Sum_probs=54.5
Q ss_pred ecCCCcchhHHHHHHhhcCCCC--eEEEEecCCh--hhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 116 PLGANYRLIDIPVSNCLNSNIS--KIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 116 pIgG~~pLId~~l~~l~~~Gi~--~I~Vvt~~~~--~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
|.-.....|..+|+.+.+.-.. +|+|+-.... +.+.+++.. + .+..+.++.. +.+ .|.+.
T Consensus 12 p~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~-~--------~~~ri~~i~~---~~n----~G~~~ 75 (279)
T PRK10018 12 PTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTA-L--------NDPRITYIHN---DIN----SGACA 75 (279)
T ss_pred EeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHH-c--------CCCCEEEEEC---CCC----CCHHH
Confidence 4333335667778777664333 5665543222 223333322 1 1122444432 122 68888
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (372)
+.-.++... ..+.++++.+|.++.++ +..+++...+
T Consensus 76 a~N~gi~~a---~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 76 VRNQAIMLA---QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHc---CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 777776554 45788999999988877 7888876544
No 156
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.42 E-value=2.2e+02 Score=24.49 Aligned_cols=101 Identities=11% Similarity=0.127 Sum_probs=55.6
Q ss_pred ceecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 114 AVPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 114 LlpIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
++|.-+....|...|+.+.+... -+|+|+-.-..+...+.+.. +... .+ ..+.++.. ..+ .|.+.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~-~~~~----~~-~~~~~~~~---~~~----~G~~~ 69 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKE-YIDK----DP-FIIILIRN---GKN----LGVAR 69 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHH-HHhc----CC-ceEEEEeC---CCC----ccHHH
Confidence 35555544577888888776432 35666655333333333333 1110 00 11222211 122 57777
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (372)
++..++... ..+.++++..|.++..+ +.++++...+
T Consensus 70 ~~n~g~~~~---~g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 70 NFESLLQAA---DGDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHHhC---CCCEEEEECCCcccChhHHHHHHHHHhc
Confidence 777664332 45788899999988877 8888877333
No 157
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=40.58 E-value=3e+02 Score=30.84 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=56.3
Q ss_pred hhHHHHHHhhcCCC--C--eEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHH
Q 017422 123 LIDIPVSNCLNSNI--S--KIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (372)
Q Consensus 123 LId~~l~~l~~~Gi--~--~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~ 198 (372)
++...+..+.+..- + +|+|+-.-..+...+...+ . + +.++.. +++. .+.++++-.++.
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~--------~---v~yI~R---~~n~---~gKAGnLN~aL~ 336 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V--------G---VKYIAR---PTHE---HAKAGNINNALK 336 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C--------C---cEEEEe---CCCC---cchHHHHHHHHH
Confidence 55666766654321 2 5777765555555544443 1 1 333321 1221 467888888776
Q ss_pred HHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEE
Q 017422 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAAL 240 (372)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~ 240 (372)
.. ..|.++++.+|++...| ++.++..+.+ +.++.++..
T Consensus 337 ~a---~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQt 375 (852)
T PRK11498 337 YA---KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQT 375 (852)
T ss_pred hC---CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEEc
Confidence 54 35788999999998877 6777766544 344544443
No 158
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=36.22 E-value=1e+02 Score=30.99 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHhhcCC-CCeEEEEecCCh--hhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc
Q 017422 127 PVSNCLNSN-ISKIYVLTQFNS--ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH 203 (372)
Q Consensus 127 ~l~~l~~~G-i~~I~Vvt~~~~--~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~ 203 (372)
++..|.+.+ ++-++|+||-+. +....++.. + +..+.+..+.+....|+- ..-|+..+...-+++++
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-~----~i~~pdy~L~i~~~~~tl-----~~~t~~~i~~~~~vl~~- 90 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-F----GIRKPDYDLNIMKPGQTL-----GEITGNIIEGLSKVLEE- 90 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHH-h----CCCCCCcchhccccCCCH-----HHHHHHHHHHHHHHHHh-
Confidence 344566655 999999999555 555555554 1 222233333333211110 01234444444455544
Q ss_pred CCceEEEEcCCccCc
Q 017422 204 NVLEFLVLAGDHLYR 218 (372)
Q Consensus 204 ~~~~~Lvl~gD~l~~ 218 (372)
...+.+++.||+-.-
T Consensus 91 ~kPD~VlVhGDT~t~ 105 (383)
T COG0381 91 EKPDLVLVHGDTNTT 105 (383)
T ss_pred hCCCEEEEeCCcchH
Confidence 345699999998654
No 159
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=35.19 E-value=36 Score=31.45 Aligned_cols=106 Identities=20% Similarity=0.249 Sum_probs=48.6
Q ss_pred eEEEEEeCCCC---CCCCCCc-c-CCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCC
Q 017422 90 VLGIILGGGAG---TRLYPLT-K-KRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGG 164 (372)
Q Consensus 90 m~aIILAaG~G---tRL~plT-~-~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~ 164 (372)
|.+||+--..+ |||.+.- . .|. .+. .-|+..++..+.. ++ |+||+. .+.+.......
T Consensus 1 m~~VIPvK~~~~aKSRLs~~L~~~eR~----~La--~aMl~Dvl~al~~--v~-v~vVs~--d~~v~~~a~~~------- 62 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPVLSPEERE----ALA--LAMLRDVLAALRA--VD-VVVVSR--DPEVAALARAR------- 62 (217)
T ss_dssp -EEEEE---TT-TTGGGTTTS-HHHHH----HHH--HHHHHHHHHHHHH---S-EEEEES----S-TTTTT---------
T ss_pred CeEEEEcCCCCccccccCccCCHHHHH----HHH--HHHHHHHHHHHHh--cC-eEEecc--chhhhhhhhhc-------
Confidence 66777765544 7776531 1 011 122 2588889998877 66 777774 22222111100
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHH
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAH 228 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h 228 (372)
.+ ++++... + .|--.||..++. ..+.++++|+++|+ +. ..++..++...
T Consensus 63 ---~g-~~vl~d~----~----~gLN~Al~~a~~---~~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 63 ---LG-AEVLPDP----G----RGLNAALNAALA---AAGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ----S-SEEEE-----------S-HHHHHHHHHH----H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred ---cC-CeEecCC----C----CCHHHHHHHHHh---ccCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 11 4454321 1 466677877722 22457899999999 33 45688888664
No 160
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.98 E-value=2.9e+02 Score=27.00 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=69.4
Q ss_pred EEEEEeCCCCCCCC---CCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 91 LGIILGGGAGTRLY---PLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 91 ~aIILAaG~GtRL~---plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
+.-.-|||+|-... -.-...++.+-++|| ..=++..+.+...||..-++-+...-. +
T Consensus 30 ~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg--~tg~~~~~~l~~~gi~~~fv~v~g~TR-i----------------- 89 (310)
T COG1105 30 AVTKTAGGKGINVARVLKDLGIPVTALGFLGG--FTGEFFVALLKDEGIPDAFVEVKGDTR-I----------------- 89 (310)
T ss_pred cceecCCCCceeHHHHHHHcCCCceEEEecCC--ccHHHHHHHHHhcCCCceEEEccCCCe-e-----------------
Confidence 34556788885432 112245677777876 466777888888888665554431111 0
Q ss_pred CCcEEEeeccc---C-CCCCCCCCCcHHHHHHHHHHHHh-cCCceEEEEcCCccC--cc-cHHHHHHHHHHcCCCEEE
Q 017422 168 EGFVEVLAAQQ---S-PENPNWFQGTADAVRQYLWLFEE-HNVLEFLVLAGDHLY--RM-DYERFIQAHRETDADITV 237 (372)
Q Consensus 168 ~~~v~il~~~~---~-~~~~~~~~Gta~al~~a~~~l~~-~~~~~~Lvl~gD~l~--~~-dl~~ll~~h~~~~aditi 237 (372)
-+.+....+ + ...+. +.=+-.-+.+.++.+.. ...++++|++|-.-- .. .|.++++..++.++.+.+
T Consensus 90 --nvki~~~~~~~~Tein~~G-p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vil 164 (310)
T COG1105 90 --NVKILDEEDGEETEINFPG-PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVIL 164 (310)
T ss_pred --eEEEEecCCCcEEEecCCC-CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 033333211 0 00100 12233445555555554 356789999998733 33 399999998888766443
No 161
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=31.12 E-value=3.7e+02 Score=23.63 Aligned_cols=108 Identities=13% Similarity=0.125 Sum_probs=56.9
Q ss_pred eecCCCcchhHHHHHHhhcCCC---CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI---SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTAD 191 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi---~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~ 191 (372)
+|.-+....|..+|+.+.+.-. -+|+|+-....+...+.+.. +.... ....+.++.... +..+..|-+.
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~-~~~~~----~~~~~~~~~~~~---~~~~~~G~~~ 74 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEK-WRKKL----EDSGVIVLVGSH---NSPSPKGVGY 74 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHH-HHHhC----cccCeEEEEecc---cCCCCccHHH
Confidence 4554444677788888776432 26777765433332222222 11111 011133321111 1111257777
Q ss_pred HHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCC
Q 017422 192 AVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDA 233 (372)
Q Consensus 192 al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~a 233 (372)
|.-.++... ..+.++++.+|.++..+ +..++....+...
T Consensus 75 a~N~g~~~a---~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~ 114 (219)
T cd06913 75 AKNQAIAQS---SGRYLCFLDSDDVMMPQRIRLQYEAALQHPN 114 (219)
T ss_pred HHHHHHHhc---CCCEEEEECCCccCChhHHHHHHHHHHhCCC
Confidence 766655433 45788999999988766 7777777665543
No 162
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=29.35 E-value=4.2e+02 Score=23.74 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=55.2
Q ss_pred eecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVR 194 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~ 194 (372)
+|.-+....|..+|+.+... .++|+|+-+...+...+.+.. +. +.++.. . ..|-+.+..
T Consensus 6 i~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-~~-----------~~v~~~----~----~~g~~~~~n 64 (229)
T cd02511 6 IITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-YG-----------AKVYQR----W----WDGFGAQRN 64 (229)
T ss_pred EEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-cC-----------CEEEEC----C----CCChHHHHH
Confidence 44443335677777777654 368888877544444433332 11 233321 1 267777777
Q ss_pred HHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHc
Q 017422 195 QYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET 231 (372)
Q Consensus 195 ~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~ 231 (372)
.++... ..+.++++.+|.++..+ +..+++...+.
T Consensus 65 ~~~~~a---~~d~vl~lDaD~~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 65 FALELA---TNDWVLSLDADERLTPELADEILALLATD 99 (229)
T ss_pred HHHHhC---CCCEEEEEeCCcCcCHHHHHHHHHHHhCC
Confidence 666554 35689999999998877 55555554433
No 163
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=23.73 E-value=8e+02 Score=26.75 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
.+-++++..++... ..+.++++.+|++...| +.+++..+.+ +.++.++
T Consensus 214 ~~KAgnLN~al~~a---~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~V 262 (713)
T TIGR03030 214 HAKAGNINNALKHT---DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLV 262 (713)
T ss_pred CCChHHHHHHHHhc---CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEE
Confidence 45678888776544 45789999999999888 6777776544 3444444
No 164
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.87 E-value=1.1e+02 Score=25.17 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.1
Q ss_pred chhHHHHHHhhcCCCCeEEEEe
Q 017422 122 RLIDIPVSNCLNSNISKIYVLT 143 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I~Vvt 143 (372)
|-|+..++.|.+.|+++|+|+=
T Consensus 46 P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 46 PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CCHHHHHHHHHHcCCCEEEEEc
Confidence 8899999999999999888863
No 165
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=21.52 E-value=81 Score=27.54 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.4
Q ss_pred chhHHHHHHhhcCCCCeEEEEecCCh
Q 017422 122 RLIDIPVSNCLNSNISKIYVLTQFNS 147 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I~Vvt~~~~ 147 (372)
.|+++.+..+...|+++++++|.+..
T Consensus 85 ~Ll~~~~~~Ar~~gi~~lf~LTt~~~ 110 (153)
T COG1246 85 RLLERLLADARELGIKELFVLTTRSP 110 (153)
T ss_pred HHHHHHHHHHHHcCCceeeeeecccH
Confidence 79999999999999999999997443
No 166
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=21.43 E-value=5.7e+02 Score=22.58 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=26.4
Q ss_pred CC-cHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHH
Q 017422 187 QG-TADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQA 227 (372)
Q Consensus 187 ~G-ta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~ 227 (372)
.| .++++..++... ..+.++++.+|.+...+ +..+...
T Consensus 72 ~G~k~~a~n~g~~~a---~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 72 TGYKAGALAEGMKVA---KGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred CCCchHHHHHHHHhC---CCCEEEEEcCCCCCChHHHHHhhhh
Confidence 35 466776666544 45789999999998877 6665443
No 167
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.84 E-value=5.8e+02 Score=22.40 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=26.3
Q ss_pred CCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEE
Q 017422 204 NVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240 (372)
Q Consensus 204 ~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~ 240 (372)
..+.|++++|| .|+..+++..++.|..++++..
T Consensus 105 ~iD~~vLvSgD----~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 105 NIDAVALVTRD----ADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CCCEEEEEecc----HhHHHHHHHHHHCCCEEEEEeC
Confidence 45789999998 4788899999999887665553
No 168
>PRK10063 putative glycosyl transferase; Provisional
Probab=20.77 E-value=6.6e+02 Score=23.07 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=51.4
Q ss_pred chhHHHHHHhhc----CCC-CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHH
Q 017422 122 RLIDIPVSNCLN----SNI-SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQY 196 (372)
Q Consensus 122 pLId~~l~~l~~----~Gi-~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a 196 (372)
..|..+|+.+.+ .+. -+|+|+=+...+...+.+.. +.. ...+.++. + .+ .|.++|+..+
T Consensus 14 ~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~-~~~-------~~~i~~i~--~--~~----~G~~~A~N~G 77 (248)
T PRK10063 14 EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLEN-LNG-------IFNLRFVS--E--PD----NGIYDAMNKG 77 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHH-hcc-------cCCEEEEE--C--CC----CCHHHHHHHH
Confidence 456667666642 222 35666654333444444443 211 01144442 1 12 5888998888
Q ss_pred HHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCC
Q 017422 197 LWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDAD 234 (372)
Q Consensus 197 ~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~ad 234 (372)
+... ..+.++++++|.++..+..+++......+.+
T Consensus 78 i~~a---~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~ 112 (248)
T PRK10063 78 IAMA---QGRFALFLNSGDIFHQDAANFVRQLKMQKDN 112 (248)
T ss_pred HHHc---CCCEEEEEeCCcccCcCHHHHHHHHHhCCCC
Confidence 7655 3578889998887776754555544444333
No 169
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=20.02 E-value=1.2e+02 Score=21.87 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred chhHHHHHHhhcCCCCeEEEEecCChhhHHHHHH
Q 017422 122 RLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLS 155 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~ 155 (372)
.|+++.++.+.+.|++.|.+.+.........++.
T Consensus 45 ~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~ 78 (83)
T PF00583_consen 45 KLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE 78 (83)
T ss_dssp HHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH
T ss_pred hhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH
Confidence 8999999999999999999999865554444433
Done!