Query 017422
Match_columns 372
No_of_seqs 215 out of 1790
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 14:10:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yp2_A Glucose-1-phosphate ade 100.0 7.5E-43 2.6E-47 352.1 29.5 296 72-367 3-298 (451)
2 3juk_A UDP-glucose pyrophospho 100.0 1.1E-38 3.9E-43 302.4 20.7 247 88-366 1-271 (281)
3 3brk_X Glucose-1-phosphate ade 100.0 6E-38 2.1E-42 313.8 26.0 264 87-367 10-287 (420)
4 4ecm_A Glucose-1-phosphate thy 100.0 2.4E-36 8.4E-41 285.1 25.3 239 88-370 23-264 (269)
5 2e3d_A UTP--glucose-1-phosphat 100.0 1.4E-35 4.9E-40 284.0 23.5 244 89-367 8-283 (302)
6 1tzf_A Glucose-1-phosphate cyt 100.0 1.9E-35 6.6E-40 275.9 22.3 247 88-369 1-254 (259)
7 2ux8_A Glucose-1-phosphate uri 100.0 1.8E-35 6E-40 282.9 18.4 247 88-367 13-281 (297)
8 2pa4_A UTP-glucose-1-phosphate 100.0 5E-35 1.7E-39 283.4 21.4 250 88-367 11-284 (323)
9 3pnn_A Conserved domain protei 100.0 1.2E-34 4.1E-39 278.5 21.3 259 86-365 2-291 (303)
10 4evw_A Nucleoside-diphosphate- 100.0 2.1E-34 7.3E-39 270.3 21.2 227 92-362 2-244 (255)
11 1fxo_A Glucose-1-phosphate thy 100.0 7.9E-33 2.7E-37 264.8 24.1 234 88-364 1-240 (293)
12 1lvw_A Glucose-1-phosphate thy 100.0 2E-32 6.9E-37 262.2 24.6 233 89-364 3-241 (295)
13 2qh5_A PMI, ALGA, mannose-6-ph 100.0 1E-32 3.4E-37 265.5 19.9 243 88-364 3-283 (308)
14 1mc3_A Glucose-1-phosphate thy 100.0 1.1E-32 3.7E-37 264.2 19.1 234 89-365 3-242 (296)
15 3st8_A Bifunctional protein GL 100.0 3.5E-31 1.2E-35 270.8 23.3 236 88-360 11-254 (501)
16 2x65_A Mannose-1-phosphate gua 100.0 3.3E-31 1.1E-35 258.2 18.5 235 90-359 2-270 (336)
17 2cu2_A Putative mannose-1-phos 100.0 9E-31 3.1E-35 255.3 14.6 234 89-361 2-267 (337)
18 1jyk_A LICC protein, CTP:phosp 100.0 2.9E-30 9.8E-35 241.9 13.4 221 89-366 25-253 (254)
19 1hm9_A GLMU, UDP-N-acetylgluco 100.0 4.1E-29 1.4E-33 252.4 22.6 231 90-364 12-249 (468)
20 3oam_A 3-deoxy-manno-octuloson 100.0 1.6E-28 5.3E-33 229.8 21.9 239 88-366 1-250 (252)
21 2ggo_A 401AA long hypothetical 100.0 7.7E-29 2.6E-33 245.6 17.0 222 90-367 1-226 (401)
22 4fce_A Bifunctional protein GL 100.0 2.2E-27 7.6E-32 238.8 19.6 230 88-364 7-243 (459)
23 3tqd_A 3-deoxy-manno-octuloson 99.9 3.3E-26 1.1E-30 214.9 23.4 238 88-363 8-256 (256)
24 2v0h_A Bifunctional protein GL 99.9 2.1E-26 7.1E-31 231.5 21.7 230 88-364 4-240 (456)
25 3k8d_A 3-deoxy-manno-octuloson 99.9 4.5E-26 1.5E-30 214.9 21.6 239 86-363 15-263 (264)
26 1h7e_A 3-deoxy-manno-octuloson 99.9 2.6E-25 8.8E-30 205.7 19.8 229 88-364 1-238 (245)
27 2y6p_A 3-deoxy-manno-octuloson 99.9 1E-24 3.5E-29 200.1 23.4 226 89-364 2-232 (234)
28 4fcu_A 3-deoxy-manno-octuloson 99.9 7.1E-24 2.4E-28 198.6 23.5 238 90-366 2-251 (253)
29 1vic_A 3-deoxy-manno-octuloson 99.9 6.6E-24 2.2E-28 198.9 22.8 239 89-367 2-255 (262)
30 2xme_A CTP-inositol-1-phosphat 99.9 7.9E-25 2.7E-29 201.3 12.5 214 87-362 16-231 (232)
31 3f1c_A Putative 2-C-methyl-D-e 99.9 6.9E-23 2.4E-27 190.5 20.0 229 87-367 1-236 (246)
32 2vsh_A TARI, 2-C-methyl-D-eryt 99.9 8.8E-23 3E-27 187.1 20.3 222 90-364 3-234 (236)
33 1vgw_A 4-diphosphocytidyl-2C-m 99.9 3E-21 1E-25 176.6 23.6 218 88-364 5-229 (231)
34 2xwl_A 2-C-methyl-D-erythritol 99.9 5E-22 1.7E-26 180.7 18.1 217 88-366 1-221 (223)
35 1ezi_A CMP-N-acetylneuraminic 99.9 3.7E-22 1.3E-26 182.8 17.2 218 88-366 3-226 (228)
36 2yc3_A 2-C-methyl-D-erythritol 99.9 1.4E-22 4.9E-27 185.2 14.1 221 88-365 3-226 (228)
37 2dpw_A Hypothetical protein TT 99.9 1.2E-22 4E-27 187.3 7.4 202 88-357 1-231 (232)
38 1i52_A 4-diphosphocytidyl-2-C- 99.8 9.1E-20 3.1E-24 167.7 18.9 222 87-366 5-230 (236)
39 1vpa_A 2-C-methyl-D-erythritol 99.8 7.6E-19 2.6E-23 161.0 19.1 215 89-367 13-231 (234)
40 1qwj_A Cytidine monophospho-N- 99.8 3.1E-19 1E-23 163.9 15.5 216 88-365 2-222 (229)
41 2waw_A MOBA relate protein; un 99.8 9.2E-19 3.2E-23 155.9 17.8 189 88-364 4-196 (199)
42 2wee_A MOBA-related protein; u 99.8 5.2E-19 1.8E-23 157.4 15.9 188 88-363 4-195 (197)
43 3rsb_A Adenosylcobinamide-phos 99.8 2.9E-19 9.9E-24 159.6 12.0 130 90-243 1-137 (196)
44 2px7_A 2-C-methyl-D-erythritol 99.8 1.3E-18 4.3E-23 160.7 16.5 210 88-367 24-235 (236)
45 2icy_A Probable UTP-glucose-1- 99.8 1.3E-17 4.4E-22 168.3 19.9 245 88-362 78-371 (469)
46 3q80_A 2-C-methyl-D-erythritol 99.8 3.1E-17 1.1E-21 151.4 20.4 217 89-363 7-229 (231)
47 3d5n_A Q97W15_sulso; NESG, SSR 99.7 9.4E-18 3.2E-22 150.7 11.0 185 89-365 2-190 (197)
48 2e8b_A Probable molybdopterin- 99.7 9.2E-18 3.1E-22 151.2 10.2 179 88-363 13-198 (201)
49 1e5k_A Molybdopterin-guanine d 99.7 1.8E-16 6.1E-21 142.9 15.3 117 87-236 4-123 (201)
50 2i5k_A UTP--glucose-1-phosphat 99.7 1E-15 3.5E-20 155.3 18.8 242 87-361 90-387 (488)
51 1jv1_A Glcnac1P uridyltransfer 99.7 3.9E-15 1.3E-19 151.6 20.4 205 88-315 101-344 (505)
52 3ngw_A Molybdopterin-guanine d 99.6 1.2E-14 4E-19 132.0 18.7 116 90-238 1-118 (208)
53 1w55_A ISPD/ISPF bifunctional 99.6 6.3E-16 2.1E-20 152.1 10.2 201 87-363 1-204 (371)
54 2oeg_A UTP-glucose-1-phosphate 99.6 8.1E-14 2.8E-18 141.4 19.0 259 88-365 74-394 (505)
55 2yqc_A UDP-N-acetylglucosamine 99.5 7.1E-13 2.4E-17 134.4 16.6 209 88-315 102-352 (486)
56 3oc9_A UDP-N-acetylglucosamine 99.5 2.8E-12 9.7E-17 126.5 20.1 205 88-313 34-275 (405)
57 3r3i_A UTP--glucose-1-phosphat 97.8 0.00018 6.2E-09 72.8 14.0 247 85-361 123-426 (528)
58 3gue_A UTP-glucose-1-phosphate 97.8 0.0014 4.8E-08 65.8 19.8 255 88-363 75-388 (484)
59 3ogz_A UDP-sugar pyrophosphory 97.3 0.011 3.9E-07 60.9 18.8 167 88-261 113-320 (630)
60 2i5e_A Hypothetical protein MM 97.0 0.002 6.9E-08 57.3 8.3 105 88-226 2-111 (211)
61 3cgx_A Putative nucleotide-dip 96.5 0.023 7.8E-07 52.0 11.5 89 121-229 37-129 (242)
62 2iu8_A LPXD, UDP-3-O-[3-hydrox 95.9 0.0026 8.9E-08 61.9 2.1 103 207-350 12-118 (374)
63 3bcv_A Putative glycosyltransf 90.5 3.2 0.00011 36.1 12.1 101 120-238 16-119 (240)
64 1qg8_A Protein (spore coat pol 82.0 18 0.00062 31.4 12.3 106 115-235 7-121 (255)
65 2z86_A Chondroitin synthase; G 70.9 71 0.0024 32.1 14.5 100 115-232 381-483 (625)
66 1xhb_A Polypeptide N-acetylgal 70.7 63 0.0022 31.2 13.7 97 122-235 43-146 (472)
67 4fix_A UDP-galactofuranosyl tr 64.9 43 0.0015 34.6 11.5 105 116-238 187-303 (657)
68 3ckj_A Putative uncharacterize 58.9 55 0.0019 30.1 10.1 102 122-239 61-169 (329)
69 2z86_A Chondroitin synthase; G 57.9 73 0.0025 32.0 11.7 98 122-236 106-207 (625)
70 2ffu_A Ppgalnact-2, polypeptid 57.5 48 0.0017 32.5 10.0 92 123-235 81-178 (501)
71 2d7i_A Polypeptide N-acetylgal 55.7 87 0.003 31.4 11.7 100 116-232 119-225 (570)
72 3f1y_A Mannosyl-3-phosphoglyce 51.9 67 0.0023 30.7 9.6 52 187-241 165-219 (387)
73 2nxv_A ATP synthase subunits r 28.8 2.8E+02 0.0096 23.9 9.3 41 187-230 60-101 (249)
74 2xvy_A Chelatase, putative; me 28.6 61 0.0021 29.0 4.9 24 122-145 65-88 (269)
75 2i5e_A Hypothetical protein MM 23.1 46 0.0016 28.5 2.8 27 335-361 157-183 (211)
No 1
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=100.00 E-value=7.5e-43 Score=352.13 Aligned_cols=296 Identities=96% Similarity=1.453 Sum_probs=228.7
Q ss_pred ccCccccCCCCCcccCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHH
Q 017422 72 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 151 (372)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~ 151 (372)
++++....+|.++..|+.|+|||||||.||||+|||..+||||+||+|++|||+|++++|.++|+++|+|+++++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~ 82 (451)
T 1yp2_A 3 VSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLN 82 (451)
T ss_dssp -------CCCCSSCHHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHH
T ss_pred cccccccceecCcccccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHH
Confidence 34556667788888888899999999999999999999999999999976999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHc
Q 017422 152 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRET 231 (372)
Q Consensus 152 ~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~ 231 (372)
+|+.+.|..+++.++..+.++++...+.+++++|.+||+++|+++++++.....++|||++||+++..++.++++.|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~ 162 (451)
T 1yp2_A 83 RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRET 162 (451)
T ss_dssp HHHHHHCC--------CCEEEEEESCSSTTSCCCCCSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCCHHHHHHHHHHT
T ss_pred HHHhhhhhcccccccccCcEEEecccccccccccccCcHHHHHHHHHHHHhcCCCeEEEecCcEEEcCCHHHHHHHHHHc
Confidence 99876431011100012335666555555566788999999999998885433578999999999998999999999999
Q ss_pred CCCEEEEEEecCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHH
Q 017422 232 DADITVAALPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLN 311 (372)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ 311 (372)
++++|+++.+...+....||++.+|++|+|+.|.|||.......+.++.++++..+......++++++|+|+|++++|.+
T Consensus 163 ~~~~tl~~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 242 (451)
T 1yp2_A 163 DADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLN 242 (451)
T ss_dssp TCSEEEEEEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHH
T ss_pred CCcEEEEEEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHH
Confidence 99999988886533357899999998999999999998765554555555554332221224579999999999999877
Q ss_pred HHhhhCCCCCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 312 LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 312 ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
++++.++...++..++|+.++++|.+|++|.++++|.||||++||++|++.++++.
T Consensus 243 ~l~~~~~~~~~~~~~~l~~~i~~g~~v~~~~~~~~w~digt~~~l~~a~~~l~~~~ 298 (451)
T 1yp2_A 243 LLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 298 (451)
T ss_dssp HHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECCSCCEECSSHHHHHHHHHGGGCSS
T ss_pred HHHhhcccccchHhhHHHHHHhcCCceEEEEeCCEEEECCCHHHHHHHHHHHhccc
Confidence 88766555567778999999987789999999999999999999999999998765
No 2
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=100.00 E-value=1.1e-38 Score=302.38 Aligned_cols=247 Identities=22% Similarity=0.335 Sum_probs=196.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--cCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGGY 165 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l~~~ 165 (372)
|.|+|||||||.||||+|+|+.+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+..+ +...
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 358999999999999999999999999999998 9999999999999999999999999999999986532211 0000
Q ss_pred CC-----------CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-----HHHHHHHHH
Q 017422 166 KN-----------EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-----YERFIQAHR 229 (372)
Q Consensus 166 ~~-----------~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-----l~~ll~~h~ 229 (372)
.. .+ +.+....+ .+..||+++|++++.++. .++|+|++||++++.+ +.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~-~~i~~~~~-----~~~~Gt~~al~~a~~~l~---~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~ 150 (281)
T 3juk_A 80 NKENALKSIRNIIEK-CCFSYVRQ-----KQMKGLGHAILTGEALIG---NEPFAVILADDLCISHDHPSVLKQMTSLYQ 150 (281)
T ss_dssp CHHHHHHHHHHHHHH-CEEEEEEC-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEEECTTSCCHHHHHHHHHH
T ss_pred cchhhhhhhhccccC-ccEEEEec-----CCCCCcHHHHHHHHHHcC---CCCEEEEeCCeeccCccchHHHHHHHHHHH
Confidence 00 00 22221111 234899999999998884 4789999999999888 999999999
Q ss_pred HcCCCEEEEEEecCCCCCcceeEEEECC--CC--ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEe
Q 017422 230 ETDADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (372)
Q Consensus 230 ~~~aditi~~~~~~~~~~~~~g~v~id~--~g--~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~ 305 (372)
+.++ +++++.+++.+....||++.+|+ +| +|+.|.|||..... .++++++|+|+|+
T Consensus 151 ~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~GiYi~~ 210 (281)
T 3juk_A 151 KYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGRYILT 210 (281)
T ss_dssp HHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEC
T ss_pred HcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEEEEEC
Confidence 8887 67777777555678999999987 78 99999999975321 2468999999999
Q ss_pred HHHHHHHHhhhCCCC-CC-hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 306 KDVMLNLLRDKFPGA-ND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 306 ~~~l~~ll~~~~~~~-~~-~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
+++|. .+....++. .+ .+.++++.+++.+ +|.+|.++|+|.|||||+||++|++.++++
T Consensus 211 ~~~l~-~l~~~~~~~~~e~~l~d~i~~l~~~~-~v~~~~~~g~~~dIgt~~d~~~a~~~l~~~ 271 (281)
T 3juk_A 211 PDIFE-ILSETKPGKNNEIQITDALRTQAKRK-RIIAYQFKGKRYDCGSVEGYIEASNAYYKK 271 (281)
T ss_dssp TTHHH-HHHTCCCCGGGSCCHHHHHHHHHHHS-CCEEEECCSEEEETTSHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHhcCCCCCCceeHHHHHHHHHhcC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhc
Confidence 99885 565542211 11 2489999999855 999999999999999999999999988754
No 3
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6e-38 Score=313.84 Aligned_cols=264 Identities=38% Similarity=0.655 Sum_probs=203.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|+|||||||.||||+|+|..+||+|+||+|++|||+|+|+++.++|+++|+|+++++.+++.+|+...|. +....
T Consensus 10 m~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~--~~~~~ 87 (420)
T 3brk_X 10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWD--FFRPE 87 (420)
T ss_dssp GGGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSC--CCCGG
T ss_pred hhceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhc--ccccc
Confidence 3468999999999999999999999999999996689999999999999999999999999999999887432 10000
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
....+.++...+...++.|..||+++|++++.++.+...++|||++||+++..++.++++.|.++++++|+++.+.+.+.
T Consensus 88 ~~~~v~i~~~~~~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~ 167 (420)
T 3brk_X 88 RNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRME 167 (420)
T ss_dssp GTCEEEEECCC-------CCCCHHHHHHTTHHHHHHHCCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTG
T ss_pred ccCCEEEeCccccccCCccccCCHHHHHHHHHHHHhcCCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccc
Confidence 11225454333211134577999999999998886433478999999999888999999999999999999988764434
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCCh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDF 323 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~~ 323 (372)
...||++.+|++|+|+.|.|||....... .....+++++|+|+|++++|.+++++..+. ..+|
T Consensus 168 ~~~~g~v~~d~~g~v~~~~ekp~~~~~~~--------------~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~ 233 (420)
T 3brk_X 168 ATGFGVMHVNEKDEIIDFIEKPADPPGIP--------------GNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDF 233 (420)
T ss_dssp GGGSEEEEECTTSBEEEEEESCSSCCCBT--------------TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC-------
T ss_pred cCcccEEEECCCCcEEEeEeCCCcccccc--------------ccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccc
Confidence 67899999998999999999986432100 001246899999999999887777654331 2345
Q ss_pred hhhhHHHhhhCCCcEEEEEE-----------cCeEeeCCCHHHHHHHHHhccCCC
Q 017422 324 GSEVIPGATSIGMRVQAYLY-----------DGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~-----------~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
..++++.+++++ ++++|.+ +++|.||||++||++|++.++++.
T Consensus 234 ~~d~l~~li~~g-~v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~ 287 (420)
T 3brk_X 234 GKDIIPYIVEHG-KAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVV 287 (420)
T ss_dssp ---CTTHHHHHS-CEEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHhhhC-cEEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCC
Confidence 679999999866 9999999 889999999999999999998754
No 4
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=100.00 E-value=2.4e-36 Score=285.07 Aligned_cols=239 Identities=24% Similarity=0.366 Sum_probs=195.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCC-hhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN-SASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~-~~~i~~~l~~~~~~~l~~~~ 166 (372)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++.++|+++|+|++++. .+.+.+++..+..++
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~~~~~~~----- 96 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLGSGQEFG----- 96 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGT-----
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHhhccccC-----
Confidence 458999999999999999999999999999986 9999999999999999999999975 467777776533322
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
+.+....+ .+..||+++|++++..+. .++|+|++||+++..++.++++.|.++++++++++.++++
T Consensus 97 ----~~i~~~~~-----~~~~G~~~al~~a~~~~~---~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-- 162 (269)
T 4ecm_A 97 ----VSFTYRVQ-----DKAGGIAQALGLCEDFVG---NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDD-- 162 (269)
T ss_dssp ----CEEEEEEC-----SSCCCHHHHHHTTHHHHT---TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECSC--
T ss_pred ----ceEEEeeC-----CccCcHHHHHHHHHHhcC---CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECCC--
Confidence 12211111 124899999999988884 4789999999999988999999999999999999988764
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-h
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~ 324 (372)
...||++..| +|+|+.|.|||..+. .+++++|+|+|++++|. .+++..+. ..++ .
T Consensus 163 ~~~~g~v~~d-~g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~-~l~~~~~~~~ge~~l 219 (269)
T 4ecm_A 163 PERFGVANIQ-NRKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFS-YIKELKPSARGELEI 219 (269)
T ss_dssp GGGSEEEEEE-TTEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHH-HHTSCCBCTTSCBCH
T ss_pred CCCceEEEEc-CCEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHH-hhhhcCCCCCCeeeH
Confidence 5789999987 599999999985321 46899999999999885 55544321 2233 5
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCCCCC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPD 370 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~~~~ 370 (372)
.++++.+++.+ ++.++.++++|.|||||+||.+|+..+.+...+.
T Consensus 220 ~d~l~~l~~~g-~v~~~~~~~~~~dIgt~~dl~~a~~~l~~~~~~~ 264 (269)
T 4ecm_A 220 TDINNWYLKRG-VLTYNEMSGWWTDAGTHVSLQRANALARDINFGK 264 (269)
T ss_dssp HHHHHHHHHTT-CEEEEECCSCEEECSSHHHHHHHHHHTTTCCCCT
T ss_pred HHHHHHHHHcC-CEEEEEeCCEEEeCCCHHHHHHHHHHHHhccccc
Confidence 89999999855 8999999999999999999999999998876553
No 5
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=284.01 Aligned_cols=244 Identities=23% Similarity=0.321 Sum_probs=189.9
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--c---C
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--M---G 163 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l---~ 163 (372)
.|+|||||||.||||+|+|+.+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+... + +
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 86 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRV 86 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC---
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhcc
Confidence 58999999999999999999999999999997 9999999999999999999999999899999986532100 0 0
Q ss_pred CCC---------CCC-cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcc--------cHHHHH
Q 017422 164 GYK---------NEG-FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM--------DYERFI 225 (372)
Q Consensus 164 ~~~---------~~~-~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~--------dl~~ll 225 (372)
..+ ..+ .+.++. + .+..||+++|++++.++. .++|+|++||++++. ++.+++
T Consensus 87 ~~~~l~~~~~~~~~~~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~l~~l~ 156 (302)
T 2e3d_A 87 KRQLLDEVQSICPPHVTIMQVR--Q-----GLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMI 156 (302)
T ss_dssp -CHHHHHHHHTSCTTCEEEEEE--C-----SSCCCHHHHHHHTHHHHC---SSCEEEECTTEEECTTSSCTTTSTHHHHH
T ss_pred chhhhhhhhhccccCcceEEee--C-----CccCCHHHHHHHHHHHcC---CCcEEEEcCCccccCccccchHHHHHHHH
Confidence 000 001 122221 1 234899999999998884 468999999999872 799999
Q ss_pred HHHHHcCCCEEEEEEecCCCCCcceeEEEEC----CCC---ceEEEEecCChhhhhhhccccccccCCchhcccCCceEE
Q 017422 226 QAHRETDADITVAALPMDEKRATAFGLMKID----EEG---RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIAS 298 (372)
Q Consensus 226 ~~h~~~~aditi~~~~~~~~~~~~~g~v~id----~~g---~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 298 (372)
+.|.+.++ +++++.+.+ ..+.||++..+ ++| +|..|.|||..... .+++++
T Consensus 157 ~~~~~~~~-~~i~~~~~~--~~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~-------------------~~~~~~ 214 (302)
T 2e3d_A 157 RRFDETGH-SQIMVEPVA--DVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PSNLAI 214 (302)
T ss_dssp HHHHHHCC-EEEEEEECS--CGGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-------------------SCSEEE
T ss_pred HHHHhcCC-cEEEEEEcc--CCCCccEEEecccccCCCCceeEEEEEECCCCCcc-------------------ccceEE
Confidence 99988877 788877763 36789999874 567 99999999865321 246899
Q ss_pred EEEEEEeHHHHHHHHhhhCCCC-CC-hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 299 MGIYVISKDVMLNLLRDKFPGA-ND-FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 299 ~Giyv~~~~~l~~ll~~~~~~~-~~-~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+|+|+|++++|. .+++..++. .+ +..++++.+++.+ +|.++.++++|.||||++||++|++.++.+.
T Consensus 215 ~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~i~~l~~~~-~v~~~~~~~~~~DIgt~~d~~~a~~~~~~~~ 283 (302)
T 2e3d_A 215 VGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKE-TVEAYHMKGKSHDCGNKLGYMQAFVEYGIRH 283 (302)
T ss_dssp EEEEEECTTHHH-HHTCCCC----CCCHHHHHHHHHHHS-CEEEEECCSCEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEEECHHHHH-HHHhhCCCCCCceehHHHHHHHHHhC-CEEEEEeCCeEEcCCCHHHHHHHHHHHHhcC
Confidence 999999999885 555544321 12 3578999988855 9999999999999999999999997665544
No 6
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=100.00 E-value=1.9e-35 Score=275.92 Aligned_cols=247 Identities=20% Similarity=0.288 Sum_probs=182.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhc--ccCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS--NMGGY 165 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~--~l~~~ 165 (372)
|.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+...+.+ ++...
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 358999999999999999999999999999997 999999999999999999999999999999998764311 11000
Q ss_pred CCCCcEEEeecccCC-----CCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcccHHHHHHHHHHcCCCEEEEEE
Q 017422 166 KNEGFVEVLAAQQSP-----ENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAAL 240 (372)
Q Consensus 166 ~~~~~v~il~~~~~~-----~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~dl~~ll~~h~~~~aditi~~~ 240 (372)
...+.+++++....+ .++....||+++|++++.++. ..++|+|++||+++..++.++++.|.+.++++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~ 157 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK--DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTAT 157 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT--TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC--CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEe
Confidence 000012222110000 000113799999999987774 2478999999999888999999999988888877543
Q ss_pred ecCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 241 ~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
. ....||.+.+| +|+|..|.|||... .+++++|+|+|++++|. .+.. ..
T Consensus 158 ~----~~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~-~l~~---~~ 206 (259)
T 1tzf_A 158 F----PPGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVID-LIDN---DA 206 (259)
T ss_dssp C----CCCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGG-GCCS---TT
T ss_pred c----CCCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHH-hhcc---cc
Confidence 3 24679999888 89999999998542 25789999999999874 3321 22
Q ss_pred CChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCCCC
Q 017422 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIP 369 (372)
Q Consensus 321 ~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~~~ 369 (372)
.++..++++.++++ .++.++.++++|.||||++||.+|+..+.+.+.|
T Consensus 207 ~~~~~~~i~~~~~~-~~v~~~~~~~~~~dI~t~~d~~~a~~~~~~~~~p 254 (259)
T 1tzf_A 207 TTWEQEPLMTLAQQ-GELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAP 254 (259)
T ss_dssp CCTTTHHHHHHHHT-TCEEEEEECSCEEECCSHHHHHHHHHHHHTTCCT
T ss_pred cccHHHHHHHHHHc-CCEEEEEeCcEEEeCCCHHHHHHHHHHHhcCCCC
Confidence 34567899998874 4899999999999999999999999999876644
No 7
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=100.00 E-value=1.8e-35 Score=282.89 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=173.1
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc-----c
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN-----M 162 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~-----l 162 (372)
..|+|||||||.||||+|+|+.+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+..+ .
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 458999999999999999999999999999997 9999999999999999999999999999998876432100 0
Q ss_pred CC----C---CCCC-cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc---ccHHHHHHHHHHc
Q 017422 163 GG----Y---KNEG-FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR---MDYERFIQAHRET 231 (372)
Q Consensus 163 ~~----~---~~~~-~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~---~dl~~ll~~h~~~ 231 (372)
+. . ...+ .+.++. + .+..||+++|++++.++. .++|+|++||++++ .++.++++.|.+.
T Consensus 92 ~~~~~~~~~~~~~g~~i~~~~--~-----~~~~Gt~~al~~a~~~~~---~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~ 161 (297)
T 2ux8_A 92 GKSLDVLDGTRLKPGNIAYVR--Q-----QEPMGLGHAVWCARDIVG---DEPFAVLLPDDFMFGQPGCLKQMVDAYNKV 161 (297)
T ss_dssp TCCGGGGTTSCCSTTSEEEEE--C-----CSCCCHHHHHHTTHHHHC---SSCEEEECTTEEEESSSCHHHHHHHHHHHH
T ss_pred cchhhhhhhcccCCCceEEEe--C-----CCCCChHHHHHHHHHHcC---CCcEEEEeCCeecCCChHHHHHHHHHHHhc
Confidence 00 0 0001 133332 1 134899999999988874 47899999999987 5699999999887
Q ss_pred CCCEEEEEEecCCCCCcceeEEEECC--CC--ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHH
Q 017422 232 DADITVAALPMDEKRATAFGLMKIDE--EG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD 307 (372)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~id~--~g--~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~ 307 (372)
++ .++++.+++.+....||++..|+ +| +|..|.|||..... .++++++|+|+|+++
T Consensus 162 ~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Giyi~~~~ 221 (297)
T 2ux8_A 162 GG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGRYILQPE 221 (297)
T ss_dssp CS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEEEEECTH
T ss_pred CC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEEEEECHH
Confidence 76 57777665434457899887763 55 89999999864321 136889999999999
Q ss_pred HHHHHHhhhCCC-CCCh-hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 308 VMLNLLRDKFPG-ANDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 308 ~l~~ll~~~~~~-~~~~-~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+|. .+++..++ ..++ ..++++.++++ .+|.++.++++|.||||++||.+|++.++.+.
T Consensus 222 ~l~-~l~~~~~~~~~~~~l~d~i~~l~~~-~~v~~~~~~~~w~dIgt~~dl~~a~~~~~~~~ 281 (297)
T 2ux8_A 222 VMR-ILENQGKGAGGEIQLTDAMQRMIGD-QPFHGVTFQGTRYDCGDKAGFIQANLAVALSR 281 (297)
T ss_dssp HHH-HHHHTC--------CCTTGGGGTTT-SCEEEEECSSEEEETTSHHHHHHHHHHHHHHC
T ss_pred HHH-HHHhhCCCCCCeeEHHHHHHHHHhc-CCEEEEEecceEEeCCCHHHHHHHHHHHHhcC
Confidence 875 55544332 1122 47889998884 49999999999999999999999998777655
No 8
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=100.00 E-value=5e-35 Score=283.42 Aligned_cols=250 Identities=20% Similarity=0.259 Sum_probs=191.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcc--cCC-
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN--MGG- 164 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~--l~~- 164 (372)
+.|+|||||||.||||+|+|..+||+|+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+...+.|+ +..
T Consensus 11 ~~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~ 89 (323)
T 2pa4_A 11 AVKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMER 89 (323)
T ss_dssp -CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHT
T ss_pred cceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhcc
Confidence 458999999999999999999999999999997 9999999999999999999999999899988875432110 000
Q ss_pred ----------CCCCC-cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc--ccHHHHHHHHHHc
Q 017422 165 ----------YKNEG-FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRET 231 (372)
Q Consensus 165 ----------~~~~~-~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~ 231 (372)
....+ .+.++. + .+..||+++|++++.++.+ ..+.|+|++||++++ .++.++++.|.+.
T Consensus 90 ~~~~~~~~~~~~~~g~~i~~~~--~-----~~~~Gt~~al~~a~~~l~~-~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~ 161 (323)
T 2pa4_A 90 GKTDQVEIIRRAADLIKAVPVT--Q-----DKPLGLGHAVGLAESVLDD-DEDVVAVMLPDDLVLPTGVMERMAQVRAEF 161 (323)
T ss_dssp TCHHHHHHTTHHHHHCEEEEEE--C-----SSCCCHHHHHHTTGGGSCS-SCCEEEEECTTEEEESSCHHHHHHHHHHTT
T ss_pred chhhhhhhhhccccCcceEEEe--C-----CccCCcHHHHHHHHHHhcC-CCCeEEEEeCCcccCchHHHHHHHHHHHhc
Confidence 00000 122221 1 1248999999998877642 123399999999886 5699999999877
Q ss_pred CCCEEEEEEecCCCCCcceeEEEEC----CCC--ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEe
Q 017422 232 DADITVAALPMDEKRATAFGLMKID----EEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (372)
Q Consensus 232 ~aditi~~~~~~~~~~~~~g~v~id----~~g--~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~ 305 (372)
++ .++++.++..+....||.+.+| ++| +|+.|.|||..... .++++++|+|+|+
T Consensus 162 ~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~GiY~~~ 221 (323)
T 2pa4_A 162 GG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAATGRYLLD 221 (323)
T ss_dssp CS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEEEEEEEE
T ss_pred CC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEEEEEEEC
Confidence 65 5777777644446789999887 554 99999999864321 2468899999999
Q ss_pred HHHHHHHHhhhCCCC-CCh-hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 306 KDVMLNLLRDKFPGA-NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 306 ~~~l~~ll~~~~~~~-~~~-~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+++|. .+.+..++. ..+ ..++++.++++|.+|.++.++++|.||||++||.+|++.++.+.
T Consensus 222 ~~~~~-~l~~~~~~~~ge~~l~d~i~~l~~~g~~v~~~~~~g~w~DIgt~~dl~~a~~~~~~~~ 284 (323)
T 2pa4_A 222 RKIFD-ALRRITPGAGGELQLTDAIDLLIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSH 284 (323)
T ss_dssp THHHH-HHHHCCCCGGGCCCHHHHHHHHHHTTCCEEEEECCSEEEECSSHHHHHHHHHHHHHTC
T ss_pred HHHHH-HHHhhCCCCCCeEeHHHHHHHHHHcCCCEEEEEeCCeEEeCCCHHHHHHHHHHHhhcC
Confidence 99886 555443321 122 48999999987789999999999999999999999998877655
No 9
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=100.00 E-value=1.2e-34 Score=278.54 Aligned_cols=259 Identities=14% Similarity=0.152 Sum_probs=190.1
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecC--CCcchhHHHHHHhhcCCCCeEEEEecCCh-hhHHHHHHHhhhccc
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG--ANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNM 162 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIg--G~~pLId~~l~~l~~~Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l 162 (372)
+||+|++||||||.||||+| ||+|+||+ |+ |||+|+|+++.++|+++|+|++++.. +.+.+|+...+.++.
T Consensus 2 ~~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~ 75 (303)
T 3pnn_A 2 NAMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEGRI 75 (303)
T ss_dssp -CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTTTS
T ss_pred CCCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhccCC
Confidence 46779999999999999997 79999994 76 99999999999999999999999995 899999988665432
Q ss_pred CCCCCCCcEEEeeccc--------CCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH---
Q 017422 163 GGYKNEGFVEVLAAQQ--------SPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE--- 230 (372)
Q Consensus 163 ~~~~~~~~v~il~~~~--------~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~--- 230 (372)
. +.++.... ......+.+||++||+++++++ +++|+|++||++++.+ +.+++++|.+
T Consensus 76 ~-------i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i----~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~ 144 (303)
T 3pnn_A 76 P-------VELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI----REPFAVINADDFYGRNGFEVLARKLMTLEG 144 (303)
T ss_dssp C-------EEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC----CSCEEEEESSCBCCHHHHHHHHHHHHTTTT
T ss_pred c-------EEEEecccccccccccccccccccCCcHHHHHHHHHhc----CCCEEEEECCeecCHHHHHHHHHHHHHhcc
Confidence 1 22221110 0000113589999999998777 3689999999999887 9999999986
Q ss_pred cCCCEEEEEEecCCCCCcce-----eEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEe
Q 017422 231 TDADITVAALPMDEKRATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVIS 305 (372)
Q Consensus 231 ~~aditi~~~~~~~~~~~~~-----g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~ 305 (372)
.++++++++.++++. .+.| |++.+|++|+|++|.|||..........-....|.. .....++++++|+|+|+
T Consensus 145 ~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~--~~~~~~~~i~~GiY~f~ 221 (303)
T 3pnn_A 145 KQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKI--CTLAEDAPVSMNMWGFT 221 (303)
T ss_dssp CSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCE--EEECTTCEEEEEEEEEC
T ss_pred ccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccccccc--ccCCCCCEEEEEEEEEC
Confidence 568899998887643 1344 789999999999999998653110000000000000 00012579999999999
Q ss_pred HHHHHHHHhh--------hCC--CCCChhhhhHHHhhhCCC-cEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 306 KDVMLNLLRD--------KFP--GANDFGSEVIPGATSIGM-RVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 306 ~~~l~~ll~~--------~~~--~~~~~~~dvi~~li~~g~-~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
+++|..+ .. ..+ ....++.++++.++++|. +|.+|.++|+|+||||++||.+|+..+.+
T Consensus 222 ~~~~~~l-~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~~~~~g~w~dIgt~~dl~~a~~~l~~ 291 (303)
T 3pnn_A 222 PDYFDYS-EELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRE 291 (303)
T ss_dssp THHHHHH-HHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEEEECSCCCBCCSSGGGHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEEEEeCCceECCCCHHHHHHHHHHHHH
Confidence 9998644 32 211 222346899999998776 89999999999999999999999987653
No 10
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=100.00 E-value=2.1e-34 Score=270.34 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=174.8
Q ss_pred EEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCc
Q 017422 92 GIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGF 170 (372)
Q Consensus 92 aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~ 170 (372)
+||||||.||||+|+|..+||||+||+|+ |||+|+|+++.+ +|+++|+|++++..+ +.+++.+.... ++. ..
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~~-~~~----~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKATQ-LGI----KQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHHH-HTC----SS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHHH-cCC----CC
Confidence 79999999999999999999999999997 999999999999 899999999998876 66666553211 110 11
Q ss_pred EEEeecccCCCCCCCCCCcHHHHHHHHHHHHh---cCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 171 VEVLAAQQSPENPNWFQGTADAVRQYLWLFEE---HNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 171 v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~---~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
+.++.. + .+.+||++||++++..+.+ ..+++|+|++||+++ +.++.++ ..+++.++++.++++
T Consensus 75 ~~~~~~-~-----~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~-- 141 (255)
T 4evw_A 75 FYIAEL-H-----TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG-- 141 (255)
T ss_dssp EEEEEE-S-----SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS--
T ss_pred ceEEEe-C-----CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC--
Confidence 222221 1 1348999999999998841 235789999999998 4455543 256788888888764
Q ss_pred CcceeEEEECCCC--ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHH-HHHHHHhh----hCC-
Q 017422 247 ATAFGLMKIDEEG--RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKD-VMLNLLRD----KFP- 318 (372)
Q Consensus 247 ~~~~g~v~id~~g--~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~-~l~~ll~~----~~~- 318 (372)
..||++..|++| +|++|.||+.. ++++++|+|+|++. .|.+.+.+ ..+
T Consensus 142 -p~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~~~ 197 (255)
T 4evw_A 142 -DNWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPSQE 197 (255)
T ss_dssp -SCSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCGGG
T ss_pred -CceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhccccc
Confidence 389999999888 99999999432 35899999999985 34333322 111
Q ss_pred --CCCChhhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHh
Q 017422 319 --GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLG 362 (372)
Q Consensus 319 --~~~~~~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~ 362 (372)
....+++|+++.++++|.+|.++.++ ++|+|||||++|.+++..
T Consensus 198 ~~~gE~~ltd~i~~li~~g~~v~~~~~~~~~w~digt~~~l~~~~~~ 244 (255)
T 4evw_A 198 WERGELYIAPLYNELIQKGLNIHYHLIARHEVIFCGVPDEYTDFLRQ 244 (255)
T ss_dssp CSCSCCCSTTHHHHHHHTTCCEEEEECCGGGCEECCSHHHHHHHHHC
T ss_pred ccCCeEehHHHHHHHHHCCCEEEEEEeccccEEECCCHHHHHHHHhc
Confidence 22234689999999988999999996 899999999999999763
No 11
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=100.00 E-value=7.9e-33 Score=264.76 Aligned_cols=234 Identities=24% Similarity=0.365 Sum_probs=185.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEe-cCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLT-QFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt-~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|+|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++..+||++|+|++ +++.+.+.+++.++..+++
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~---- 75 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLGDGSNWGL---- 75 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC----
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHhcccccCc----
Confidence 358999999999999999999999999999997 9999999999999999999887 4567888888876433321
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
. +.+. .+ + ...|+++++..++.++. .++++++.||+++ ..++.++++.|.+.+.++++.+.++.+
T Consensus 76 --~-i~~~--~~-~----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d- 141 (293)
T 1fxo_A 76 --D-LQYA--VQ-P----SPDGLAQAFLIGESFIG---NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD- 141 (293)
T ss_dssp --E-EEEE--EC-S----SCCCGGGHHHHTHHHHT---TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC-
T ss_pred --e-EEEe--eC-C----CCCCHHHHHHHHHHHhC---CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC-
Confidence 0 2222 12 1 13799999999988884 3688888899865 567999999998777788887777655
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF- 323 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~- 323 (372)
+..||++++|++|+|..|.|||..+. ++++++|+|+|+++++. .+....+. ..++
T Consensus 142 -p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ge~~ 198 (293)
T 1fxo_A 142 -PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVD-IARDLKPSPRGELE 198 (293)
T ss_dssp -GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHH-HHHHCCCCTTSSCC
T ss_pred -cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHH-HHHhcCcccCCcee
Confidence 45799999999999999999985321 36899999999999886 44443332 2223
Q ss_pred hhhhHHHhhhCCCcEEEEEEc-Ce-EeeCCCHHHHHHHHHhcc
Q 017422 324 GSEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~-g~-w~DIgT~ed~~~An~~l~ 364 (372)
.+++++.+++. .++.++... ++ |.||||++||.+|+..+.
T Consensus 199 ~td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 240 (293)
T 1fxo_A 199 ITDVNRAYLER-GQLSVEIMGRGYAWLDTGTHDSLLEAGQFIA 240 (293)
T ss_dssp HHHHHHHHHHT-TCEEEEECCTTSEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCeEEEEeCCCCEEEcCCCHHHHHHHHHHHH
Confidence 47899998884 478887775 75 999999999999988764
No 12
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=100.00 E-value=2e-32 Score=262.22 Aligned_cols=233 Identities=22% Similarity=0.353 Sum_probs=184.5
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEec-CChhhHHHHHHHhhhcccCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~-~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++.+..+||++|+|+++ ++.+.+.+++.++..+++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~~g~~~g~----- 76 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGV----- 76 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTS-----
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhhhccccCc-----
Confidence 38999999999999999999999999999997 99999999999999999999886 677888888876433321
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
.+.+. .+ + ...|+++++..++.++. .++++++.||+++ ..++.++++.|.+.+.++++.+.++.+
T Consensus 77 --~i~~~--~~-~----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 142 (295)
T 1lvw_A 77 --RFSYR--VQ-E----EPRGIADAFIVGKDFIG---DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD-- 142 (295)
T ss_dssp --EEEEE--EC-S----SCCCGGGHHHHTHHHHT---TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--
T ss_pred --eEEEe--eC-C----CCCChHHHHHHHHHHhC---CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--
Confidence 02222 12 1 13799999999998884 3678888899965 568999999998777788887777765
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-h
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~ 324 (372)
+..||++++|++|+|+.|.|||..+. ++++++|+|+|+++++. .+....+. ..++ .
T Consensus 143 p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~-~~~~~~~~~~ge~~~ 200 (295)
T 1lvw_A 143 PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVE-IARRIEPSDRGELEI 200 (295)
T ss_dssp CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHH-HHHHCCCCTTSCCCH
T ss_pred cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHH-HHHhcCCcccCceeH
Confidence 44799999999999999999985321 35889999999999986 44443332 2222 4
Q ss_pred hhhHHHhhhCCCcEEEEEEc-Ce-EeeCCCHHHHHHHHHhcc
Q 017422 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~-g~-w~DIgT~ed~~~An~~l~ 364 (372)
+++++.+++. .++.++.+. ++ |.||||++||.+|+..+.
T Consensus 201 td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~ 241 (295)
T 1lvw_A 201 TSVNEEYLRM-GKLRVELMGRGMAWLDTGTHDGLLEASSFIE 241 (295)
T ss_dssp HHHHHHHHHT-TCEEEEEECTTCEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEEeCCCCeEEeCCCHHHHHHHHHHHH
Confidence 7889988874 477788785 65 999999999999998764
No 13
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=100.00 E-value=1e-32 Score=265.54 Aligned_cols=243 Identities=18% Similarity=0.295 Sum_probs=158.3
Q ss_pred CceEEEEEeCCCCCCCCCCcc-CCCccceec-CCCcchhHHHHHHhhcCCCCeEEEEecCCh-hhHHHHHHHhhhcccCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTK-KRAKPAVPL-GANYRLIDIPVSNCLNSNISKIYVLTQFNS-ASLNRHLSRAYASNMGG 164 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~-~~pKpLlpI-gG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~ 164 (372)
++|+|||||||.||||+|+|. .+||||+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++..+ +++
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~--~~~-- 76 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE--IKN-- 76 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT--CSS--
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh--hCC--
Confidence 458999999999999999997 899999999 475 9999999999999 999999999875 5666676542 110
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHH---HHHcCCCEEEEE
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQA---HRETDADITVAA 239 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~---h~~~~aditi~~ 239 (372)
..+.++. + + +..||+++|+.++.++. .++.|||++||+++ +.+ +.++++. |.+.++++|+++
T Consensus 77 ----~~~~~i~--~-~----~~~gt~~al~~a~~~l~--~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 143 (308)
T 2qh5_A 77 ----KSVGFLL--E-S----LSKNTANAIALSALMSD--KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGV 143 (308)
T ss_dssp ----CEEEEEE--E-S----SCCCHHHHHHHHHHTSC--TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ----CccEEEe--C-C----CCCChHHHHHHHHHHhC--CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 0122332 1 1 13799999999987762 23469999999998 666 9999987 777788888888
Q ss_pred EecCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC
Q 017422 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (372)
Q Consensus 240 ~~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~ 319 (372)
.+.++ ...||+++.|++|+|..|.|||.....+... ...++++++|+|+|++++|.+.+++..+.
T Consensus 144 ~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~-------------~~g~~~~n~Giy~~~~~~ll~~l~~~~p~ 208 (308)
T 2qh5_A 144 SIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEFQ-------------KSGGFYFNSGMFVFQAGVFLDELKKHAPT 208 (308)
T ss_dssp ECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHHH-------------HHCCEEEEEEEEEEEHHHHHHHHHHHCHH
T ss_pred ecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHHh-------------hcCCeEEEeEEEEEEHHHHHHHHHHhChH
Confidence 87643 5689999888789999999999865322110 01247899999999998875555433221
Q ss_pred --------------C----CChh---hhhHH--------H-hhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 320 --------------A----NDFG---SEVIP--------G-ATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 320 --------------~----~~~~---~dvi~--------~-li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
. .++. .++++ . +++++.+|.+++++++|.||||+++|++++..-.
T Consensus 209 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~sid~~lle~~~~v~~~~~~~~w~digt~~~l~~~~~~~~ 283 (308)
T 2qh5_A 209 ILKGCERAFESLENAYFFEKKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANEP 283 (308)
T ss_dssp HHHHHHHHGGGCEEECCSSSCEEEECHHHHHTSCCCCHHHHTTTTCSCEEEEECCSCCBC---------------
T ss_pred HHHHHHHHhhccccccccchhhhhhhHHHHhhCcccceeHHHhcCCCcEEEEECCCceeCCCCHHHHHHHhhcCc
Confidence 0 1111 34444 2 6776789999999999999999999999987543
No 14
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=100.00 E-value=1.1e-32 Score=264.21 Aligned_cols=234 Identities=23% Similarity=0.343 Sum_probs=184.8
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEec-CChhhHHHHHHHhhhcccCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ-FNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~-~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++..+|+++|+|+++ ++.+.+.+++.++..+++
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~~g~~~g~----- 76 (296)
T 1mc3_A 3 HMKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLGDGSEFGI----- 76 (296)
T ss_dssp CCEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHTTSGGGTC-----
T ss_pred ccEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHhcccccCc-----
Confidence 48999999999999999999999999999997 99999999999999999999886 677888888876433321
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
. +.+. .+ + +..|+++++..++.++. .++++++.||+++ ..++.++++.|.+.+.++++++.++.+
T Consensus 77 -~-i~~~--~~-~----~~~G~~~al~~a~~~i~---~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d-- 142 (296)
T 1mc3_A 77 -Q-LEYA--EQ-P----SPDGLAQAFIIGETFLN---GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD-- 142 (296)
T ss_dssp -E-EEEE--EC-S----SCCCSTHHHHHTHHHHT---TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--
T ss_pred -e-EEEe--cc-C----CCCCHHHHHHHHHHHhC---CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEECCC--
Confidence 0 2222 12 1 13799999999998884 3678777899865 567999999997777788887777665
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-h
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-G 324 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~ 324 (372)
+..||++++|++|+|+.|.|||..+. ++++++|+|+|+++++. .++...+. ..++ .
T Consensus 143 p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~-~~~~~~~~~~ge~~~ 200 (296)
T 1mc3_A 143 PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVE-YAKQVKPSERGELEI 200 (296)
T ss_dssp CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHH-HHHSCCCCSSSSCCH
T ss_pred cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHH-HHHhcCccccCCccH
Confidence 45799999999999999999985321 35889999999999986 45544332 2223 4
Q ss_pred hhhHHHhhhCCCcEEEEEEc-Ce-EeeCCCHHHHHHHHHhccC
Q 017422 325 SEVIPGATSIGMRVQAYLYD-GY-WEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~-g~-w~DIgT~ed~~~An~~l~~ 365 (372)
+++++.+++. .++.++.++ ++ |.||||++||.+|+..+..
T Consensus 201 td~~~~~l~~-g~~~v~~~~~g~~w~Digt~edl~~a~~~~~~ 242 (296)
T 1mc3_A 201 TSINQMYLEA-GNLTVELLGRGFAWLDTGTHDSLIEASTFVQT 242 (296)
T ss_dssp HHHHHHHHHT-TCEEEEECCTTCEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCeEEEEeCCCCEEEeCCCHHHHHHHHHHHHH
Confidence 7889988884 468888875 75 9999999999999987653
No 15
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.98 E-value=3.5e-31 Score=270.76 Aligned_cols=236 Identities=17% Similarity=0.176 Sum_probs=188.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhh-hcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~-~~~l~~~~ 166 (372)
..+.+||||||.||||+|+| ||||+||+|+ |||+|+|++|.++|+++|+|+++|..+++.+|+.+.. .++.
T Consensus 11 ~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~---- 82 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELADTLGR---- 82 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHHHHTS----
T ss_pred CCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHHhcCC----
Confidence 34789999999999999976 9999999997 9999999999999999999999999999999998632 2211
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Ccc-cHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRM-DYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~~-dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
. ++++ .| ++++|||+||+++++++.+...+.+|+++||.. +.. .+.+|+++|++.++++|+++.++++
T Consensus 83 --~-i~~~--~q-----~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~d 152 (501)
T 3st8_A 83 --T-IDVA--LQ-----DRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDD 152 (501)
T ss_dssp --C-CEEE--EC-----SSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC
T ss_pred --c-EEEE--Ec-----CCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCC
Confidence 1 2222 22 235899999999999887655678999999984 443 4899999999999999999999865
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CC
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AN 321 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~ 321 (372)
++.||.+..|++|+|+.|.||++....+. ..+.+++|+|+|+++.|.+++.+...+ ..
T Consensus 153 --p~~yG~i~~~~~g~v~~ivEk~~~~~~~~-----------------~i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e 213 (501)
T 3st8_A 153 --PFGYGRILRTQDHEVMAIVEQTDATPSQR-----------------EIREVNAGVYAFDIAALRSALSRLSSNNAQQE 213 (501)
T ss_dssp --CTTSCEEEECTTCCEEEEECGGGCCHHHH-----------------HCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCS
T ss_pred --chhccccccccceeEEeeccccCCChhhc-----------------cceeeeceeeeecchhHHHhhhhhcccccccc
Confidence 68999999999999999999987543211 146899999999999998888765432 23
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEcCeEeeCC--CHHHHHHHH
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYDGYWEDIG--TIEAFYNAN 360 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~g~w~DIg--T~ed~~~An 360 (372)
.++.+++..+...+..+.++..+..|...+ +...+..+.
T Consensus 214 ~yltd~i~~~~~~g~~v~~~~~~~~~~~~g~n~~~~l~~~~ 254 (501)
T 3st8_A 214 LYLTDVIAILRSDGQTVHASHVDDSALVAGVNNRVQLAELA 254 (501)
T ss_dssp CCTTHHHHHHHHTTCCEEEEECSSGGGGCCCSSHHHHHHHH
T ss_pred cchhhHHHHHHhcCceEEEEeccchhhhcccccHHHHHHHH
Confidence 346889998888899999999988776655 444444443
No 16
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.97 E-value=3.3e-31 Score=258.20 Aligned_cols=235 Identities=21% Similarity=0.316 Sum_probs=175.6
Q ss_pred eEEEEEeCCCCCCCCCCc-cCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCCh-hhHHHHHHHhhhcccCCCC
Q 017422 90 VLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT-~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~ 166 (372)
|++||||||.||||+|+| ..+||+|+|++|.+|||+|+++++.++ |+++|+|++++.. +.+.+++.....
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~~~~~------- 74 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELPELPD------- 74 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTBCHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCTTSCG-------
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCCcHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhhcccc-------
Confidence 789999999999999999 789999999998449999999999997 8999999999864 456666543100
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCcc--cH----HHHHHHHHHcCCCEEEEEE
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRM--DY----ERFIQAHRETDADITVAAL 240 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~--dl----~~ll~~h~~~~aditi~~~ 240 (372)
.. + ++. |. .+||++++..+...+. .++.++|++||+++.. ++ ..+++.|.+.++.+|+++.
T Consensus 75 -~~-i-i~e----~~----~~gta~ai~~a~~~~~--~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~ 141 (336)
T 2x65_A 75 -EN-I-IAE----PM----KKNTAPACFIGTKLAD--DDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIV 141 (336)
T ss_dssp -GG-E-EEE----SS----CCCHHHHHHHHHTTSC--TTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred -ce-E-EeC----CC----CCCcHHHHHHHHHhhC--CCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEee
Confidence 01 2 221 11 3799999998876442 3467999999998853 44 4455557766778888887
Q ss_pred ecCCCCCcceeEEEECCC-----CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhh
Q 017422 241 PMDEKRATAFGLMKIDEE-----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 241 ~~~~~~~~~~g~v~id~~-----g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
+... .+.||+++.|++ ++|..|.|||.....+.+. ..+.+++++|+|+|+++.|.+.+++
T Consensus 142 p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g~y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 142 PTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV-------------ESGRFLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp CCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHH-------------HHTCEEEEEEEEEEEHHHHHHHHHH
T ss_pred cccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHHH-------------hcCCeEEEeeeEEEEHHHHHHHHHH
Confidence 7543 578999998765 7999999999876442211 1235799999999999988555544
Q ss_pred hCCC----------CC-ChhhhhHHH---------hhhCCCcEEEEEEcCeEeeCCCHHHHHHH
Q 017422 316 KFPG----------AN-DFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNA 359 (372)
Q Consensus 316 ~~~~----------~~-~~~~dvi~~---------li~~g~~V~a~~~~g~w~DIgT~ed~~~A 359 (372)
..|. .. +|..++++. +++++.++.+++++++|.||||+++|+++
T Consensus 207 ~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DiGt~~~l~~~ 270 (336)
T 2x65_A 207 CEPSIYENLKDVDPRNFEELKKAYEKVPSISVDYAVMEKSKKVRVVKADFEWSDLGNWSSVREI 270 (336)
T ss_dssp HCHHHHHHHTTCCTTCHHHHHHHHHHSCCCCHHHHTTTTCSCEEEEECSSCCBCCCSHHHHHHH
T ss_pred HCHHHHHHHHHhhhhhhhHHHHHHHhCccccHHHHHhcCCCeEEEEEecCCCcCCCCHHHHHhh
Confidence 3221 01 344566665 56657899999999999999999999999
No 17
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.97 E-value=9e-31 Score=255.26 Aligned_cols=234 Identities=22% Similarity=0.304 Sum_probs=171.2
Q ss_pred ceEEEEEeCCCCCCCCCCc-cCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChh-hHHHHHHHhhhcccCCC
Q 017422 89 SVLGIILGGGAGTRLYPLT-KKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSA-SLNRHLSRAYASNMGGY 165 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT-~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~ 165 (372)
+|.+||||||.||||+|+| ..+||+|+|++|.+|||+|+++++.++ |+++|+|++++... .+.+++..
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~pli~~~l~~l~~~~~~~~iiVvt~~~~~~~i~~~l~~--------- 72 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPLFEGKTLLEATLERLAPLVPPERTLLAVRRDQEAVARPYADG--------- 72 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGCBHHHHHHHHHTTTSCGGGEEEEEEGGGHHHHGGGCSS---------
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEcCCCChHHHHHHHHHhCcCCCCCEEEEcChHHHHHHHHHhcc---------
Confidence 4899999999999999999 689999999998349999999999998 89999999987642 33333221
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc-CCceEEEEcCCccCcc--cHHHHHH----HHHHcCCCEEEE
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYRM--DYERFIQ----AHRETDADITVA 238 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~-~~~~~Lvl~gD~l~~~--dl~~ll~----~h~~~~aditi~ 238 (372)
..+ ++. + +..||+.++..+.. +... .++.++|++||+++.. .+..+++ .|.+ ++.+|++
T Consensus 73 ---~~~-i~e----~----~~~gta~ai~~a~~-l~~~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~~vt~~ 138 (337)
T 2cu2_A 73 ---IRL-LLE----P----LGRDTAGAVLLGVA-EALKEGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GFVVALG 138 (337)
T ss_dssp ---SEE-EEE----S----SCCHHHHHHHHHHH-HHHHHTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TCEEEEE
T ss_pred ---Cce-Eec----C----CCCCcHHHHHHHHH-HhccCCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCeEEEe
Confidence 111 221 1 13799999998877 5432 3578999999998753 3554444 3433 6778888
Q ss_pred EEecCCCCCcceeEEEECCC----CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHh
Q 017422 239 ALPMDEKRATAFGLMKIDEE----GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLR 314 (372)
Q Consensus 239 ~~~~~~~~~~~~g~v~id~~----g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~ 314 (372)
+.+.. +.+.||+++.|++ ++|..|.|||.....+.+. ..+ +++++|+|+|+++.|.+.++
T Consensus 139 i~p~~--~~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g-~~~n~Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 139 LRPTR--PETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI-------------RKG-YVWNGGVFAFAPATMAELFR 202 (337)
T ss_dssp ECCSS--CCSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH-------------HTT-CEEEEEEEEECHHHHHHHHH
T ss_pred eccCC--CCCCceEEEECCcccccCeEEEEEeCCChHHHHHHh-------------hcC-CEEEEEEEEEeHHHHHHHHH
Confidence 87754 3578999998766 8999999999875443221 112 79999999999998855665
Q ss_pred hhCCCCC---------ChhhhhHHH---------hhhCCCcEEEEEEcCeEeeCCCHHHHHHHHH
Q 017422 315 DKFPGAN---------DFGSEVIPG---------ATSIGMRVQAYLYDGYWEDIGTIEAFYNANL 361 (372)
Q Consensus 315 ~~~~~~~---------~~~~dvi~~---------li~~g~~V~a~~~~g~w~DIgT~ed~~~An~ 361 (372)
+..|... ....+.++. +++++.++.+++++++|.||||+++|+++..
T Consensus 203 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sidy~vme~~~~v~v~~~~~~W~DvGt~~~l~~~~~ 267 (337)
T 2cu2_A 203 RHLPSHHEALERLLAGASLEEVYAGLPKISIDYGVMEKAERVRVVLGRFPWDDVGNWRALERVFS 267 (337)
T ss_dssp HHCHHHHHHHHHHHTTCCHHHHHHTSCCCCHHHHTGGGCSSEEEEEECSCEECCCSTTHHHHHHT
T ss_pred HHCHHHHHHHHHHhcCCcHHHHHhhCccchHHHHHhhCCCcEEEEEeCCcEEcCCCHHHHHHHhh
Confidence 4433110 001344554 5666789999999999999999999999864
No 18
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.97 E-value=2.9e-30 Score=241.85 Aligned_cols=221 Identities=13% Similarity=0.186 Sum_probs=161.6
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
+|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++..+. ..+ +
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~-~~~--~------- 93 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFDYLK-EKY--G------- 93 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGTHHH-HHH--C-------
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHH-HhC--C-------
Confidence 58999999999999999999999999999997 999999999999999999999999888876443 322 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.++...+ .+ ..|++++|+.++..++ +++|++||+++..+ +.+++ +.++.+++ ...+ +.
T Consensus 94 --~~iv~~~~--~~---~~g~~~al~~a~~~~~-----~~lv~~~D~~~~~~~~~~~~----~~~~~~t~---~~~~-~~ 153 (254)
T 1jyk_A 94 --VRLVFNDK--YA---DYNNFYSLYLVKEELA-----NSYVIDADNYLFKNMFRNDL----TRSTYFSV---YRED-CT 153 (254)
T ss_dssp --CEEEECTT--TT---TSCTHHHHHTTGGGCT-----TEEEEETTEEESSCCCCSCC----CSEEEEEC---EESS-CS
T ss_pred --cEEEECCC--cc---CCCcHHHHHHHHHHCC-----CEEEEeCCcccCHHHHHHHH----hCCceEEE---Eccc-CC
Confidence 33432211 11 3799999998876552 48999999988655 33332 22322332 2222 22
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHH---HHHHhhhCCC---CC
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVM---LNLLRDKFPG---AN 321 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l---~~ll~~~~~~---~~ 321 (372)
..|+++ +|++|+|+.|.||+. ..++++|+|+|+++.+ .+++++..+. ..
T Consensus 154 ~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~~~~~e 208 (254)
T 1jyk_A 154 NEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVD 208 (254)
T ss_dssp SCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhcCCccc
Confidence 367765 888999999999752 2478999999998643 3344433221 23
Q ss_pred ChhhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHhccCC
Q 017422 322 DFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 322 ~~~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~~~ 366 (372)
.+.+++++.+++ +.+|.++.++ ++|.||||++||.+|++.+..+
T Consensus 209 ~~~~d~~~~l~~-~~~v~~~~~~~~~~~~Idt~edl~~a~~~l~~~ 253 (254)
T 1jyk_A 209 LYWDNMVKDNIK-ELDVYVEELEGNSIYEIDSVQDYRKLEEILKNE 253 (254)
T ss_dssp CCTTHHHHTTGG-GCCEEEEECCTTSEEECCSHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHh-hCCeEEEEecCCeEEEcCCHHHHHHHHHHhhhc
Confidence 346788888766 7899999998 7899999999999999987653
No 19
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.97 E-value=4.1e-29 Score=252.43 Aligned_cols=231 Identities=18% Similarity=0.227 Sum_probs=184.2
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
-+|||||||.||||++ .+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++.. +
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~~~------------~ 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAG------------Q 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSSSS------------S
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHhCC------------C
Confidence 5799999999999985 689999999997 99999999999999999999999987777655432 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.++. + .|..|++++|++++..++. ..+.||+++||+ +...++.++++.|.+.++++++++.+.++ .
T Consensus 76 -i~~v~--~-----~~~~G~~~sl~~a~~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~--~ 144 (468)
T 1hm9_A 76 -TEFVT--Q-----SEQLGTGHAVMMTEPILEG-LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDN--P 144 (468)
T ss_dssp -SEEEE--C-----SSCCCHHHHHHTTHHHHTT-CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSC--C
T ss_pred -cEEEe--C-----CccCChHHHHHHHHHHhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCC--C
Confidence 23332 1 1248999999999988852 247899999999 44567999999999999999988888654 4
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCChh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---ANDFG 324 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~~~ 324 (372)
..||.+..|++|+|..|.|||..... ....+++++|+|+|+++.|.+.+++.... ...+.
T Consensus 145 ~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~ 207 (468)
T 1hm9_A 145 FGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYI 207 (468)
T ss_dssp TTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTTCSCCT
T ss_pred CceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCCCeEEH
Confidence 57999999989999999998753211 01246899999999999776677654332 12345
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCC--CHHHHHHHHHhcc
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIG--TIEAFYNANLGIT 364 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIg--T~ed~~~An~~l~ 364 (372)
+|+++.++++|.++++|.++|+|.|+| |++||..|+..+.
T Consensus 208 ~d~~~~l~~~g~~v~~~~~~g~~~~i~i~t~~dl~~a~~~~~ 249 (468)
T 1hm9_A 208 TDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMR 249 (468)
T ss_dssp THHHHHHHHHTCCEEEEECSSGGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEcCChHHhhCCCCHHHHHHHHHHHH
Confidence 899999998788999999999998855 9999999987653
No 20
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.96 E-value=1.6e-28 Score=229.78 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=174.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|++.|||||||.|||| | +|+|+||+|+ |||+|+++.+..+|+++|+|+++ .+.+.+++.. + +
T Consensus 1 M~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~~-~--g------ 62 (252)
T 3oam_A 1 MSFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQA-F--G------ 62 (252)
T ss_dssp CCEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--T------
T ss_pred CceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHHH-c--C------
Confidence 3588999999999999 3 7999999997 99999999999999999999995 5778877764 1 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cC-cccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LY-RMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~-~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
++++... +++..||++ +..++..+.....+.||+++||. ++ ..++.++++.|.+.++++++++.++++
T Consensus 63 ---~~v~~~~-----~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~- 132 (252)
T 3oam_A 63 ---GVVCMTS-----PNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIED- 132 (252)
T ss_dssp ---CEEEECC-----TTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECC-
T ss_pred ---CEEEEcC-----CCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCC-
Confidence 2232211 123489988 55555555211357899999999 44 456999999999888899999988765
Q ss_pred CCcce-----eEEEECCCCceEEEEecCChhhhhhhccccccccCCchhc-ccCCceEEEEEEEEeHHHHHHHHhhhCCC
Q 017422 246 RATAF-----GLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERA-KEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (372)
Q Consensus 246 ~~~~~-----g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~Giyv~~~~~l~~ll~~~~~~ 319 (372)
...| |.+..|++|+|+.|.+||......... .++. ...++++++|+|+|++++|..+.... ++
T Consensus 133 -~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~---------~~~~~~~~~~~~n~GiY~~~~~~l~~~~~~~-~~ 201 (252)
T 3oam_A 133 -EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA---------KADKAIVQPLLRHIGIYAYRAGFINTYLDWQ-PS 201 (252)
T ss_dssp -HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH---------SSSCCCCSCEEEEEEEEEEETTHHHHHHHSC-CC
T ss_pred -HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc---------cccccccccceEEEEEEEcCHHHHHHHHcCC-CC
Confidence 3455 889999999999999998654221100 0000 01257999999999999998765432 22
Q ss_pred CCChhhhhHHH--hhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhccCC
Q 017422 320 ANDFGSEVIPG--ATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 320 ~~~~~~dvi~~--li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l~~~ 366 (372)
..+ ..|.+.. ++++|.+|.++..++ .|.|||||+||.+|+..+..+
T Consensus 202 ~~e-~~E~le~lr~l~~G~~i~~~~~~~~~~~~idt~~dl~~a~~~~~~r 250 (252)
T 3oam_A 202 QLE-KIECLEQLRVLWHGEKIHVAVALEAPPAGVDTPEDLEVVRRIVAER 250 (252)
T ss_dssp HHH-HHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccc-ccchhHHHHHHHCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhh
Confidence 111 1223322 356699999997755 699999999999999887654
No 21
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.96 E-value=7.7e-29 Score=245.63 Aligned_cols=222 Identities=21% Similarity=0.358 Sum_probs=175.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|+|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++ +.+++...+. .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~~---------~ 67 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKLK---------E 67 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHCT---------T
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccCC---------c
Confidence 6899999999999999999999999999997 9999999999999999999999876 7777765321 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCc--ccHHHHHHHHHHcCCCEEEEEEecCCCCC
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYR--MDYERFIQAHRETDADITVAALPMDEKRA 247 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~--~dl~~ll~~h~~~~aditi~~~~~~~~~~ 247 (372)
+.++.. +.|..|++++++.+.. .++|++++||+++. .++.++++ .++.++++.+.++ .
T Consensus 68 -i~~~~~------~~~~~g~~~~l~~~~~------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~~~--~ 127 (401)
T 2ggo_A 68 -ISIVTQ------KDDIKGTGAAILSAKF------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKVSN--P 127 (401)
T ss_dssp -CEEEEC------CTTCCBSTTTGGGCCC------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEECSC--C
T ss_pred -EEEEeC------CCCCCChHHHHHHhcc------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEcCC--C
Confidence 333321 1134799998876543 46899999999887 56888876 4677888887654 4
Q ss_pred cceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCCh-hh
Q 017422 248 TAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-ANDF-GS 325 (372)
Q Consensus 248 ~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~~-~~ 325 (372)
..|+.+..|++|+|..|.|||..+. +++.++|+|+|++++|. .+++..+. ..++ ..
T Consensus 128 ~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~ 185 (401)
T 2ggo_A 128 KDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFT-YLDKISISERGELELT 185 (401)
T ss_dssp SSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHH-HHHHSCCCSSSCBCHH
T ss_pred cceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHH-HhhhcCcCCCCceEHH
Confidence 5788888888899999999885431 36889999999999886 45543321 1222 46
Q ss_pred hhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
++++.+ +.+.++.++..+++|.||+||+||.+|+..++.+.
T Consensus 186 ~~~~~~-~~g~~v~~~~~~~~~~dI~t~edl~~a~~~l~~~~ 226 (401)
T 2ggo_A 186 DAINLM-AKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNL 226 (401)
T ss_dssp HHHHHH-HHHSCEEEEECCSCEEECCSHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HCCCcEEEEEecceEEcCCCHHHHHHHHHHHHHhc
Confidence 888888 65779999999999999999999999999887653
No 22
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.95 E-value=2.2e-27 Score=238.80 Aligned_cols=230 Identities=17% Similarity=0.223 Sum_probs=179.9
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++|.|||||||.|+||++ ++||+|+|++|+ |||+|+++.|.++|+++|+|++++..+.+.+++... +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~~---------~ 73 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLADP---------S 73 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhccC---------C
Confidence 468999999999999987 689999999997 999999999999999999999999988888776541 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
+.++. + .+..|+++++++++..+. ..+.||+++||+ +...++.++++.|.+ .++++++.+.++
T Consensus 74 ---~~~v~--~-----~~~~g~~~~i~~~~~~~~--~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~- 138 (459)
T 4fce_A 74 ---LNWVL--Q-----AEQLGTGHAMQQAAPHFA--DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDN- 138 (459)
T ss_dssp ----CEEE--C-----SSCCCHHHHHHHHGGGSC--TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSC-
T ss_pred ---cEEEe--C-----CCCCCcHHHHHHHHHhcC--CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCC-
Confidence 22322 1 124899999999987774 247899999999 334669999998764 567777777654
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCC---CCCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFP---GAND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~---~~~~ 322 (372)
...||.+..| +|+|..|.|||.....+ ...+++++|+|+|+++.|.++++.... ....
T Consensus 139 -~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 199 (459)
T 4fce_A 139 -PSGYGRIVRE-NGDVVGIVEHKDASDAQ-----------------REINEINTGILVANGRDLKRWLSLLDNNNAQGEF 199 (459)
T ss_dssp -CTTSCEEEEE-TTEEEEEECGGGCCTTG-----------------GGCCEEEEEEEEEEHHHHHHHHHTCCCCSTTCSC
T ss_pred -CCcccEEEeC-CCcEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 4678988887 79999999986532211 124689999999999988777765432 2223
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeE--eeCCCHHHHHHHHHhcc
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYW--EDIGTIEAFYNANLGIT 364 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w--~DIgT~ed~~~An~~l~ 364 (372)
+..++++.+++.|.++.++..+++| ++|+|++||..|+..+.
T Consensus 200 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tp~Dl~~ae~~l~ 243 (459)
T 4fce_A 200 YITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQ 243 (459)
T ss_dssp CTTHHHHHHHHTTCCEEEECCSSGGGGCCCSSHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCHHHhhCCCCHHHHHHHHHHHH
Confidence 4689999999888999999999865 67999999999987654
No 23
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.95 E-value=3.3e-26 Score=214.86 Aligned_cols=238 Identities=13% Similarity=0.110 Sum_probs=164.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|++.|||||||.||||. ||+|+||+|+ |||+|+++.+.++|+++|+|+++ .+.+.+++.. + +
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~~-~--g------ 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAED-F--G------ 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-T--T------
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-c--C------
Confidence 56899999999999993 8999999997 99999999999999999999985 5777777654 1 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cc-ccHHHHHHHHHHc-CCCEEEEEEecCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YR-MDYERFIQAHRET-DADITVAALPMDE 244 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~-~aditi~~~~~~~ 244 (372)
++++.. .++|..||++ +..++..+.....+.|+++.||.. +. ..+.++++.|.+. ++++++++.++.+
T Consensus 70 ---~~v~~~-----~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~ 140 (256)
T 3tqd_A 70 ---AVVCMT-----SSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITE 140 (256)
T ss_dssp ---CEEEEC-----CTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCC
T ss_pred ---CeEEEe-----CCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCC
Confidence 223221 1234578876 777777663223578999999994 44 4599999999875 5677777777643
Q ss_pred C----CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 245 K----RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 245 ~----~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
. ....++ |.+|++|+++.|.+||.+....... ...+.....+++..+|+|.|++++|..+.. ..+..
T Consensus 141 ~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~-l~~s~ 211 (256)
T 3tqd_A 141 VDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLS-WDACP 211 (256)
T ss_dssp HHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHH-SCCCH
T ss_pred HHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHh-CCCCc
Confidence 1 123344 4689999999999998753221000 000000113579999999999999986543 22221
Q ss_pred CChh-hhhHH--HhhhCCCcEEEEEEcCe-EeeCCCHHHHHHHHHhc
Q 017422 321 NDFG-SEVIP--GATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGI 363 (372)
Q Consensus 321 ~~~~-~dvi~--~li~~g~~V~a~~~~g~-w~DIgT~ed~~~An~~l 363 (372)
++ .|-+. +++++|++|+++.++++ |.||||||||.+|+..+
T Consensus 212 --lE~~e~leqlr~le~G~~i~~~~~~~~~~~~idtpeDl~~a~~~~ 256 (256)
T 3tqd_A 212 --AEKMEALEQLRILWHGGRIHMVVAKSKCPPGVDTEEDLERVRAYF 256 (256)
T ss_dssp --HHHHHTCTTHHHHHTTCCCEEEECSSCCCCCCSSHHHHHHHHTTC
T ss_pred --ccchhhhHHHHHHHCCCeEEEEEeCCCCCCCcCCHHHHHHHHHhC
Confidence 22 23333 34677999999999986 99999999999998653
No 24
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.95 E-value=2.1e-26 Score=231.52 Aligned_cols=230 Identities=18% Similarity=0.231 Sum_probs=179.3
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++|.|||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+++...
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~---------- 69 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLANE---------- 69 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTTC----------
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhcC----------
Confidence 568999999999999975 689999999997 999999999999999999999999887777765431
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc--cCcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH--LYRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~--l~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
+ ++++. + . +..|+++++++++..+++ .+.||+++||+ +...++.++++.|.+ +++++++.+.++
T Consensus 70 -~-~~~v~--~--~---~~~g~~~~~~~~~~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~- 135 (456)
T 2v0h_A 70 -Q-VNWVL--Q--T---EQLGTAHAVQQAAPFFKD--NENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTVNLDN- 135 (456)
T ss_dssp -C-CEEEE--C--S---CCCCHHHHHHHHGGGCCT--TSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSS-
T ss_pred -C-cEEEe--C--C---CCCCcHHHHHHHHHhcCC--CCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEeecCC-
Confidence 1 23332 1 1 238999999999876642 47899999999 334679999998865 677887777654
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC---CCC
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG---AND 322 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~---~~~ 322 (372)
...|+.+..| +|+|..|.||+.....+ ...+++++|+|+|+++.|.+.++..... ...
T Consensus 136 -~~~~g~v~~~-~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~ 196 (456)
T 2v0h_A 136 -PTGYGRIIRE-NGNVVAIVEQKDANAEQ-----------------LNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEY 196 (456)
T ss_dssp -CTTSCEEEEE-TTEEEEEECTTTCCHHH-----------------HTCCEEEEEEEEEEHHHHHHHHTTCCCCSTTCCC
T ss_pred -CCccceEEEc-CCcEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHHHhccccccccE
Confidence 4568888887 89999999987632211 1246899999999999776677654322 123
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCe--EeeCCCHHHHHHHHHhcc
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGY--WEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~--w~DIgT~ed~~~An~~l~ 364 (372)
+..++++.++..+.++.++.++++ |++|+||+||.+|+..+.
T Consensus 197 ~~~d~~~~~~~~g~~v~~~~~~~~~~~~~I~tpeDl~~a~~~l~ 240 (456)
T 2v0h_A 197 YLTDLIALANQDNCQVVAVQATDVMEVEGANNRLQLAALERYFQ 240 (456)
T ss_dssp CGGGHHHHHHHTTCCEEEEECSCTGGGCCCSSHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHcCCEEEEEEeCCcceEEeCCCHHHHHHHHHHHH
Confidence 468999999887889999999765 679999999999988654
No 25
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.94 E-value=4.5e-26 Score=214.87 Aligned_cols=239 Identities=16% Similarity=0.183 Sum_probs=168.4
Q ss_pred cCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 86 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 86 ~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
..|++.|||||||.|||| | +|+|+||+|+ |||+|+++++.++|+++|+|+++ .+.+.+++.. +.
T Consensus 15 ~~M~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~~-~g------ 78 (264)
T 3k8d_A 15 SHMSFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVEA-AG------ 78 (264)
T ss_dssp ---CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHHH-TT------
T ss_pred CCCceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHHH-cC------
Confidence 346689999999999999 2 5999999997 99999999999999999999994 5777776654 11
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC--cccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY--RMDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~--~~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
++++.. .++|..||+. +..++..+.....+.|+++.||..+ ...+.++++.+.+.++++++++.++.
T Consensus 79 -----~~v~~~-----~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~ 147 (264)
T 3k8d_A 79 -----GEVCMT-----RADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIH 147 (264)
T ss_dssp -----CEEEEC-----CTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECC
T ss_pred -----CEEEEe-----cCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcC
Confidence 223221 1234578876 7777766642235789999999943 35699999999888889999998876
Q ss_pred CCC----CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC
Q 017422 244 EKR----ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (372)
Q Consensus 244 ~~~----~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~ 319 (372)
+.. ...+. +.+|++|+++.|.+||.+.......++ +.....+++.++|+|.|++++|..+.. ..+.
T Consensus 148 d~~~~~~p~~vk-Vv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~y~~~~l~~~~~-~~~~ 217 (264)
T 3k8d_A 148 NAEEAFNPNAVK-VVLDAEGYALYFSRATIPWDRDRFAEG--------LETVGDNFLRHLGIYGYRAGFIRRYVN-WQPS 217 (264)
T ss_dssp SHHHHTCTTSCE-EEECTTSBEEEEESSCCSCCHHHHHHC--------SSCCCSCCEEECSEEEEEHHHHHHHHH-SCCC
T ss_pred CHHHccCCCceE-EEECCCCeEEEEecCCCCCCCcccccc--------ccccCCcceEEEEEEEECHHHHHHHHh-CCCC
Confidence 421 12223 457999999999999864221100000 000012478999999999999987654 2222
Q ss_pred CCChh-hhhHH--HhhhCCCcEEEEEEcC-eEeeCCCHHHHHHHHHhc
Q 017422 320 ANDFG-SEVIP--GATSIGMRVQAYLYDG-YWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 320 ~~~~~-~dvi~--~li~~g~~V~a~~~~g-~w~DIgT~ed~~~An~~l 363 (372)
.++ .|.+. +++++|.+|+++...+ +|.+|||||||.+|+..+
T Consensus 218 --~lE~~e~leqlr~le~G~~I~~~~~~~~~~~~IdtpeDl~~a~~~l 263 (264)
T 3k8d_A 218 --PLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 263 (264)
T ss_dssp --HHHHHHTCTTHHHHHTTCCEEEEECSCCCSCCCCSHHHHHHHHHHC
T ss_pred --hhhhHHHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHh
Confidence 122 23333 2456799999997755 599999999999998765
No 26
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.93 E-value=2.6e-25 Score=205.72 Aligned_cols=229 Identities=17% Similarity=0.259 Sum_probs=161.3
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCC-CeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNI-SKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi-~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++.|||||||.|+|| | ||+|+|++|+ |||+|+++.+..+|+ ++|+|++++ +.+.+++.. +
T Consensus 1 m~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~~-~-------- 62 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQA-F-------- 62 (245)
T ss_dssp CCEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHHH-T--------
T ss_pred CCeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHHH-c--------
Confidence 3588999999999999 5 9999999997 999999999999996 999999976 667666654 1
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHc-CCCEEEEEEecC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRET-DADITVAALPMD 243 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~-~aditi~~~~~~ 243 (372)
+ ++++... +++..|+++++. ++..+ ..+.+++++||+.+ . .++.++++.|.+. ++++++.+.+.+
T Consensus 63 --~-~~~~~~~-----~~~~~g~~~~~~-~~~~~---~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 130 (245)
T 1h7e_A 63 --G-GKAIMTR-----NDHESGTDRLVE-VMHKV---EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAIS 130 (245)
T ss_dssp --T-CEEEECC-----SCCSSHHHHHHH-HHHHS---CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEEC
T ss_pred --C-CeEEeCC-----CccCCcHHHHHH-HHHhC---CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCC
Confidence 1 2333211 123467866554 43333 34789999999954 3 4599999999888 788877777752
Q ss_pred CCCCcceeE--EEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCC
Q 017422 244 EKRATAFGL--MKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (372)
Q Consensus 244 ~~~~~~~g~--v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~ 321 (372)
.....+++. +..+++|++..|.+++....... ...+.+.++|+|+|+++.|.+++ +. + ..
T Consensus 131 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~-~~-~-~~ 192 (245)
T 1h7e_A 131 AAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS-QL-P-ES 192 (245)
T ss_dssp HHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG-GS-C-CC
T ss_pred HHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH-hC-C-CC
Confidence 110011122 22367899999988754311100 00135779999999999887665 22 2 22
Q ss_pred Ch-hhhhHHHhh--hCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 322 DF-GSEVIPGAT--SIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 322 ~~-~~dvi~~li--~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
++ ..|.++.+. +.|.+|.++..+++|+|||||+||..|+..+.
T Consensus 193 ~~~~td~~~~~~~~~~g~~v~~~~~~~~~~dIdtp~Dl~~a~~~l~ 238 (245)
T 1h7e_A 193 MPEQAESLEQLRLMNAGINIRTFEVAATGPGVDTPACLEKVRALMA 238 (245)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECCCCCCCSSSHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 23 356666543 55889999999999999999999999988664
No 27
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.93 E-value=1e-24 Score=200.14 Aligned_cols=226 Identities=18% Similarity=0.223 Sum_probs=156.1
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
++.|||||||.||||+ ||+|+|++|+ |||+|+++++.++ +++|+|++++ +.+.+++...
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~~----------- 60 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVEDL----------- 60 (234)
T ss_dssp CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTTT-----------
T ss_pred ceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHhc-----------
Confidence 5889999999999996 8999999997 9999999999999 9999999976 5666665431
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecCC-C
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE-K 245 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~-~ 245 (372)
+.++.. ++ ++..|+++++ .++..+ ..+.+++++||+ +++ .++.++++.|.+.++.++++.....+ .
T Consensus 61 --~~~~~~---~~--~~~~g~~~~~-~~~~~~---~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (234)
T 2y6p_A 61 --CEVFLT---PS--DLPSGSDRVL-YVVRDL---DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKDKEAYE 129 (234)
T ss_dssp --SEEEEC---CT--TCCSHHHHHH-HHHTTC---CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEECSGGGG
T ss_pred --eEEEEC---Cc--ccccchHHHH-HHHHhC---CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecCCHHHhc
Confidence 122211 11 1236788766 333322 357899999999 777 56999999998877444544442110 1
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
....++ +..|++|+|..|.+||......+ ...+.+.++|+|+|+++.|.++... .+...+ ..
T Consensus 130 ~~~~~~-~~~~~~g~v~~~~e~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~~~-~~~~~~-~~ 191 (234)
T 2y6p_A 130 RPEDVK-VVLDREGYALYFSRSPIPYFRKN---------------DTFYPLKHVGIYGFRKETLMEFGAM-PPSKLE-QI 191 (234)
T ss_dssp CTTSCE-EEECTTSBEEEEESSCCSCCSSC---------------CSSCCEEEEEEEEEEHHHHHHHHHS-CCCHHH-HH
T ss_pred CCCceE-EEEcCCCCEeeeecCCCCccccc---------------ccceeeEEEEEEEcCHHHHHHHHhC-CCCccc-hh
Confidence 123344 34578899999999875311000 0013467999999999998766542 121111 11
Q ss_pred hhHH--HhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 326 EVIP--GATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 326 dvi~--~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
|.+. .++..|.+|.++.++++|.|||||+||..|+..+.
T Consensus 192 d~~~~~~~~~~g~~v~~~~~~~~~~dI~t~~dl~~a~~~~~ 232 (234)
T 2y6p_A 192 EGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK 232 (234)
T ss_dssp HTCTHHHHHHTTCCCEEEECCSCCCCCCSHHHHHHHHHHCC
T ss_pred hHHHHHHHHHCCCeEEEEEeCCcccCCCCHHHHHHHHHHHh
Confidence 2221 24555889999999999999999999999998763
No 28
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.92 E-value=7.1e-24 Score=198.62 Aligned_cols=238 Identities=13% Similarity=0.115 Sum_probs=165.4
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHH-HHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPV-SNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l-~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
+.|||||+|.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+++ .+.+.+++.. + +
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~--~~~i~~~~~~-~--------g- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATD--DERIAEICRA-E--------G- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEES--CHHHHHHHHT-T--------T-
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECC--HHHHHHHHHH-c--------C-
Confidence 469999999999995 5999999997 9999999 9999999999999996 4667666543 1 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHc-CCCEEEEEEecCC-
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRET-DADITVAALPMDE- 244 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~-~aditi~~~~~~~- 244 (372)
++++... +++..|| +++..++..+.....+.++++.||. +.. ..+.++++.|.+. +++++.++.+..+
T Consensus 63 --~~v~~~~-----~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~ 134 (253)
T 4fcu_A 63 --VDVVLTS-----ADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHAL 134 (253)
T ss_dssp --CCEEECC-----TTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCH
T ss_pred --CeEEEeC-----CCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCH
Confidence 1222111 1123677 5788888777422347899999999 444 4599999999876 3454434444321
Q ss_pred ---CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCC
Q 017422 245 ---KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAN 321 (372)
Q Consensus 245 ---~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~ 321 (372)
..+..++ |..|++|+++.|.++|.+........+ .......++.++|+|.|++++|.++.. ..+ .
T Consensus 135 ~~~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~-~~~--~ 202 (253)
T 4fcu_A 135 DEFQRDSIVK-VVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVT-WEM--G 202 (253)
T ss_dssp HHHHCTTSCE-EEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTT-SCC--C
T ss_pred HHccCCCccE-EEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHh-CCC--C
Confidence 1133344 568899999999998865322110000 000012568899999999999987653 212 2
Q ss_pred Chh-hhhHHH--hhhCCCcEEEEEEcCe-EeeCCCHHHHHHHHHhccCC
Q 017422 322 DFG-SEVIPG--ATSIGMRVQAYLYDGY-WEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 322 ~~~-~dvi~~--li~~g~~V~a~~~~g~-w~DIgT~ed~~~An~~l~~~ 366 (372)
.++ .|.+.. ++++|++|+++..+++ |.|||||+||.+|+..+.++
T Consensus 203 ~le~~e~le~lr~l~~G~~I~~~~~~~~~~~~IdtpeDL~~a~~~l~~r 251 (253)
T 4fcu_A 203 KLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLNNMPVES 251 (253)
T ss_dssp HHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHTSCGGG
T ss_pred cccchhHHHHHHHHHCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 232 455553 3566999999999999 99999999999999877654
No 29
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.92 E-value=6.6e-24 Score=198.92 Aligned_cols=239 Identities=16% Similarity=0.162 Sum_probs=163.8
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
+|.|||||||.||||. +|+|+|++|+ |||+|+++++.++|+++|+|++++ +.+.+++.. +
T Consensus 2 ~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~~-~---------- 61 (262)
T 1vic_A 2 SFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAKS-F---------- 61 (262)
T ss_dssp CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHH-T----------
T ss_pred CcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHHh-c----------
Confidence 5789999999999994 4999999997 999999999999999999999975 556666654 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHcCCCEEEEEEecCCC-
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRETDADITVAALPMDEK- 245 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~~aditi~~~~~~~~- 245 (372)
+ +.++.. + +.+..|++ .+..+...+.....+.+++++||..+ . .++.++++.+.+.++++++++.++.+.
T Consensus 62 ~-~~~~~~---~--~~~~~g~~-~~~~~~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 134 (262)
T 1vic_A 62 G-AEVCMT---S--VNHNSGTE-RLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAE 134 (262)
T ss_dssp T-CEEEEC---C--CSSCCHHH-HHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHH
T ss_pred C-CEEEEC---C--ccccCChH-HHHHHHHHhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHH
Confidence 1 223221 1 12336776 45555555532234679999999843 3 569999999988888888888876541
Q ss_pred --CCcceeEEEECCCCceEEEEecCChhhhhhh-------ccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhh
Q 017422 246 --RATAFGLMKIDEEGRIIEFSEKPKGEQLKAM-------KVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK 316 (372)
Q Consensus 246 --~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~ 316 (372)
....+..+..|++|+|+.|.+++........ .++ ....+..++|+|+|+++.+..+...
T Consensus 135 ~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~~~~-----------~p~~~~~~~giy~~~~~~l~~~~~~- 202 (262)
T 1vic_A 135 ELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQ-----------LSDAYLRHIGIYAYRAGFIKQYVQW- 202 (262)
T ss_dssp HHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGGGCC-----------CCTTCEEEEEEEEEEHHHHHHHHHS-
T ss_pred HhcCCCceEEEECCCCCEeeeecCCCCcCCccccccccccccc-----------cccceEEEEEEEEeeHHHHHHHHhC-
Confidence 0123444555888999999887632111000 000 0012688999999999988755432
Q ss_pred CCCCCChhhhhHH--HhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHhccCCC
Q 017422 317 FPGANDFGSEVIP--GATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 317 ~~~~~~~~~dvi~--~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
.+...+. .+++. .+++.|.+|.++..+ ++|.|||||+||..|+..+....
T Consensus 203 ~~~~~~~-~e~~~~~~~l~~g~~v~~~~~~~~~~~dI~tpeDl~~a~~~l~~~~ 255 (262)
T 1vic_A 203 APTQLEN-LEKLEQLRVLYNGERIHVELAKEVPAVGVDTAEDLEKVRAILAANG 255 (262)
T ss_dssp CCCHHHH-HHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHHHHHHHTC
T ss_pred CCCchhh-hhhHHHHHHHHCCCeEEEEEeCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 1111110 12222 356558899999998 78999999999999998876543
No 30
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.92 E-value=7.9e-25 Score=201.30 Aligned_cols=214 Identities=17% Similarity=0.210 Sum_probs=135.6
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|.+||||||.||||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ ++.+++.+++...+.
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~~------- 81 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDKG------- 81 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTSC-------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhcC-------
Confidence 55689999999999999986 9999999997 9999999999999 99999999 778888777643211
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
.. +.++.. +.|..|++++++.++..++ +++++++||++++.+ +.++++.+ . +++.......
T Consensus 82 -~~-~~~v~~------~~~~~g~~~~i~~a~~~~~----~~~lv~~~D~p~~~~~~~~l~~~~-----~-~~~~~~~~~~ 143 (232)
T 2xme_A 82 -FN-YKIVRH------DRPEKGNGYSLLVAKNHVE----DRFILTMGDHVYSQQFIEKAVRGE-----G-VIADREPRFV 143 (232)
T ss_dssp -CC-EEEEEC------SCGGGCHHHHHHTTGGGCC----SSEEEEETTEEECHHHHHHHTTCC-----E-EEEESSCSSS
T ss_pred -Cc-EEEEEC------CCCCCCcHHHHHHHHHHCC----CCEEEEcCCcccCHHHHHHHHhCC-----C-cEEEcccccc
Confidence 01 344321 1233799999998876653 579999999987655 45555421 1 2222111111
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
+...++.+..+ +|+|+.|.+++.. .+.+++|+|++++++|. .+.+..........
T Consensus 144 ~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~-~l~~~~~~g~~~l~ 198 (232)
T 2xme_A 144 DIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFE-HAEKLRDREEIPLS 198 (232)
T ss_dssp CTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHH-HHGGGTTSSCCCHH
T ss_pred CCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHH-HHHHHHhcChhHHH
Confidence 23456666665 7899999887642 24678999999999887 45443321111123
Q ss_pred hhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHh
Q 017422 326 EVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLG 362 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~ 362 (372)
+ +++. .++.++.++ ++|.|||||+||.+|+..
T Consensus 199 ~----ll~~-~~v~~~~~~~~~~~dI~tpeDl~~a~~~ 231 (232)
T 2xme_A 199 E----IVKL-ARLPVTYVDGELWMDVDTKEDVRRANRA 231 (232)
T ss_dssp H----HHHH-HTCBEEECCSCCEEEEECC---------
T ss_pred H----HHHc-CCEEEEEECCCCEEeCCCHHHHHHHHhh
Confidence 3 4442 257777776 689999999999998764
No 31
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=99.90 E-value=6.9e-23 Score=190.53 Aligned_cols=229 Identities=15% Similarity=0.111 Sum_probs=157.8
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
|+++.+||||||.||||++ ..+||+|+|++|+ |||+|+|+++.+++ +++|+|++++........+...+..
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~----- 72 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYIS----- 72 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCC-----
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCC-----
Confidence 4568999999999999986 5689999999997 99999999999997 9999999987665432222222321
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc----CCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEE
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAA 239 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~----~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~ 239 (372)
...+.++. .. .+..+++++++..+.+. ..+.+||+.||. +.. ..+.++++.+.+.++.+ .+
T Consensus 73 --~~~~~~~~-----~~----~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i--~~ 139 (246)
T 3f1c_A 73 --DDRIVVIE-----GG----EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAVD--TV 139 (246)
T ss_dssp --CTTEEEEE-----CC----SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEE--EE
T ss_pred --CCCEEEEC-----CC----CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEE--EE
Confidence 11244432 11 46789999999888651 357899999998 333 45999999998876543 44
Q ss_pred EecCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC
Q 017422 240 LPMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG 319 (372)
Q Consensus 240 ~~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~ 319 (372)
.++.+ .++..++++.|..+.+++.. +..-..++|+.+.|.+.+++....
T Consensus 140 ~~~~d------~i~~~~~~~~v~~~~~r~~l-------------------------~~~qtpq~f~~~~L~~a~~~~~~~ 188 (246)
T 3f1c_A 140 IEALD------TIVESSNHEVITDIPVRDHM-------------------------YQGQTPQSFNMKKVFNHYQNLTPE 188 (246)
T ss_dssp EECSS------CEEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTSCHH
T ss_pred Eeccc------eEEEecCCCeEEEecChHHh-------------------------hhhcCCceeEHHHHHHHHHHHHHc
Confidence 55432 34455556666665554321 222345799988887777654211
Q ss_pred CCChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 320 ANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 320 ~~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
...+.+|.+..+...|.+|.+++.+.+|++|+||+||..|+..+..+.
T Consensus 189 ~~~~~TD~~~~~~~~g~~v~~v~~~~~~~~Itt~~Dl~~ae~~l~~~~ 236 (246)
T 3f1c_A 189 KKQILTDACKICLLAGDDVKLVKGEIFNIKITTPYDLKVANAIIQERI 236 (246)
T ss_dssp HHHHCCCHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHHHHC
T ss_pred CCCccCcHHHHHHHcCCCEEEEeCCCCccCcCCHHHHHHHHHHHhccc
Confidence 112347777777777999999999999999999999999998876543
No 32
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.90 E-value=8.8e-23 Score=187.09 Aligned_cols=222 Identities=13% Similarity=0.068 Sum_probs=144.6
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCCh-hhHHHHHHHhhhcccCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNS-ASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~~ 167 (372)
|.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|+++++. +.+.+++.. +...+ .
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~----~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDK-YLPLY----K 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHHHH-HCGGG----G
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHHHh-ccccc----c
Confidence 7899999999999987 6789999999997 9999999999998 5999999999877 555555543 21101 0
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHh--c--CCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEe
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEE--H--NVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALP 241 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~--~--~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~ 241 (372)
. .++.. +.+ .|+++++++++..+.+ . ..+.+++++||+ ++. .++.++++.|.+.++ ++++.+
T Consensus 75 ~-~~~~~-----~~~----~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~~~~ 142 (236)
T 2vsh_A 75 E-RIIIT-----KGG----ADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDTVVE 142 (236)
T ss_dssp G-GEEEE-----ECC----SSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEEEEE
T ss_pred C-ceEEE-----CCC----CchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEEEEe
Confidence 0 12221 111 5789999999888753 1 236789999999 555 469999999987655 344445
Q ss_pred cCCCCCcceeEEEECCCC-ceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 242 MDEKRATAFGLMKIDEEG-RIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 242 ~~~~~~~~~g~v~id~~g-~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
+.+ . +..+++| ++..+.+++.. ......|+|+++.+.++++.....
T Consensus 143 ~~~--~-----~~~~~~g~~~~~~~~~~~~-------------------------~~~~~p~~f~~~~l~~~~~~~~~~- 189 (236)
T 2vsh_A 143 AVD--T-----IVESTNGQFITDIPNRAHL-------------------------YQGQTPQTFRCKDFMDLYGSLSDE- 189 (236)
T ss_dssp CCS--C-----EEECSSSSBCCBCCCGGGE-------------------------EEEEEEEEEEHHHHHHHHHTCCHH-
T ss_pred ccc--c-----EEEeCCCCeeeeecChHHh-------------------------eeecCCcEecHHHHHHHHHHHHhc-
Confidence 432 1 2334677 88777665311 111237899998887666532210
Q ss_pred CCh-hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 321 NDF-GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 321 ~~~-~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
..+ ..+.+..+...+.++.++..+++|.|||||+||..|+..+.
T Consensus 190 g~~~~~~~~~~l~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~~~ 234 (236)
T 2vsh_A 190 EKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIE 234 (236)
T ss_dssp HHHHCCSHHHHHHHTTCCEEEEECCTTCCCCCSHHHHHHHHHHTC
T ss_pred CCCcCCCHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHhh
Confidence 111 23444455555789999998889999999999999998764
No 33
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.89 E-value=3e-21 Score=176.62 Aligned_cols=218 Identities=14% Similarity=0.156 Sum_probs=137.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
++|.+||||||.||||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ +.. +..
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-AFP------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-HCT------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-cCC------
Confidence 458999999999999986 579999999997 99999999999985 99999999988776665 443 110
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc----CCceEEEEcCCcc-Cc-ccHHHHHHHHHHcCCCEEEEEE
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH----NVLEFLVLAGDHL-YR-MDYERFIQAHRETDADITVAAL 240 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~----~~~~~Lvl~gD~l-~~-~dl~~ll~~h~~~~aditi~~~ 240 (372)
..+.++. +. .|++++++.++..+.+. ..+.+++++||.. .. ..+.++++.+.+.+..+ +.+.
T Consensus 73 --~~i~~~~-----~~----~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~~-~~~~ 140 (231)
T 1vgw_A 73 --QVRVWKN-----GG----QTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEGG-ILAV 140 (231)
T ss_dssp --TSEEECC-----CC----SSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTCE-EEEE
T ss_pred --CceEEEc-----CC----CcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCeE-EEEe
Confidence 1144321 11 68999999998877431 3478999999984 44 34899999887654333 4444
Q ss_pred ecCCCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCC
Q 017422 241 PMDEKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGA 320 (372)
Q Consensus 241 ~~~~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~ 320 (372)
+..+ . +..+++|+|.+..++ . ........|+|+.+.+.+++.......
T Consensus 141 ~~~~--~-----~~~~~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~~l~~~~~~~~~~g 188 (231)
T 1vgw_A 141 PVAD--T-----LKRAESGQISATVDR---S----------------------GLWQAQTPQLFQAGLLHRALAAENLGG 188 (231)
T ss_dssp ECCS--C-----EEEESSSBEEEEECC---T----------------------TEEEEEEEEEEEHHHHHHHHHC----C
T ss_pred eccc--c-----eEEeCCCceEecCCh---H----------------------HheeeeCCcEecHHHHHHHHHHHhhcC
Confidence 5332 1 112245666543322 1 112223488999988877665432111
Q ss_pred CChhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhcc
Q 017422 321 NDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 321 ~~~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~ 364 (372)
..+....+...+.++..+..++.|.|||||+||..|+..+.
T Consensus 189 ---~~~~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~ 229 (231)
T 1vgw_A 189 ---ITDEASAVEKLGVRPLLIQGDARNLKLTQPQDAYIVRLLLD 229 (231)
T ss_dssp ---CCSHHHHHHTTTCCCEEEECCTTCCCCCSHHHHHHHHHHCC
T ss_pred ---CCcHHHHHHHcCCCEEEEECCccccCcCCHHHHHHHHHHHh
Confidence 11222222223678888887788999999999999987653
No 34
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.89 E-value=5e-22 Score=180.69 Aligned_cols=217 Identities=17% Similarity=0.125 Sum_probs=151.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhh-HHHHHHHhhhcccCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSAS-LNRHLSRAYASNMGGY 165 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~-i~~~l~~~~~~~l~~~ 165 (372)
|+|.+||||||.||||+ ..+||+|+|++|+ |||+|+++.+.+++ +++|+|++++.... +.+++.
T Consensus 1 m~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~~---------- 66 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDESKLVFG---------- 66 (223)
T ss_dssp -CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHHHHHHTC----------
T ss_pred CceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHHHHHHhc----------
Confidence 35899999999999997 3579999999997 99999999999988 99999999876643 333221
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
..+ +.++. +. .+.+++++.++..++ ..+.++++.||+ +.. .++.++++.|. .+.+.++.+.+..
T Consensus 67 -~~~-v~~~~-----~~----~~~~~~i~~al~~~~--~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~~~~~ 132 (223)
T 2xwl_A 67 -GED-SVIVS-----GG----VDRTESVALALEAAG--DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPGLAPA 132 (223)
T ss_dssp -BTT-EEEEE-----CC----SSHHHHHHHHHTTCT--TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEEECCS
T ss_pred -cCC-eEEEc-----CC----CCHHHHHHHHHHhcC--CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEEEecc
Confidence 011 43332 11 467889998887662 346789999998 444 45999999883 3456677666654
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
+ ...+ .|++|++..+.+++.. ......++|++..+..+++... ..+
T Consensus 133 d--~~~~----~~~~g~~~~~~e~~~l-------------------------~~~~~p~~f~~~~l~~~~~~~~---~~~ 178 (223)
T 2xwl_A 133 D--TIKA----VDANGAVLGTPERAGL-------------------------RAVQTPQGFHADVLRRAYARAT---AGG 178 (223)
T ss_dssp S--CEEE----ECTTSBEEECCCGGGE-------------------------EEECSCEEEEHHHHHHHHTTCC---SCC
T ss_pred c--ceEE----EcCCCcEEeecChHHh-------------------------eeeeCCcccCHHHHHHHHHHhh---CCC
Confidence 3 2222 3778999888776421 1122357889887776654321 122
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
..+....+...+.++..+..+++|.|||||+||..|+..+.++
T Consensus 179 ~~~~~~~~~~~~~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 221 (223)
T 2xwl_A 179 VTDDASLVEQLGTPVQIVDGDPLAFKITTPLDLVLAEAVLAHH 221 (223)
T ss_dssp CCCHHHHHHTTTCCCEEEECCGGGCCCCSHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHcCCCEEEEECCcccccccCHHHHHHHHHHHhhc
Confidence 3444444444467899999988999999999999998876543
No 35
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.88 E-value=3.7e-22 Score=182.80 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=148.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++.|||||||.||||+ ||+|+|++|+ |||+|+++.+.+++ +++|+|+++ .+.+.+++.. +.
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~--~~~i~~~~~~-~~------- 65 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTD--GGLIAEEAKN-FG------- 65 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEES--CHHHHHHHHH-TT-------
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECC--CHHHHHHHHH-cC-------
Confidence 45779999999999996 8999999997 99999999999988 799999996 3556555543 11
Q ss_pred CCCcEEEe-ecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 167 NEGFVEVL-AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 167 ~~~~v~il-~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
+.++ ....... +..|+++++++++..+.. ..+.+++++||..+ . .++.++++.+.+.++++++.+.+..
T Consensus 66 ----~~~~~~~~~~~~---~~~g~~~sv~~~l~~~~~-~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 137 (228)
T 1ezi_A 66 ----VEVVLRPAELAS---DTASSISGVIHALETIGS-NSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPME 137 (228)
T ss_dssp ----CEEEECCC---------CHHHHHHHHHHHHHTC-CSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECS
T ss_pred ----CEEEeCchHHcC---CCCChHHHHHHHHHHhCC-CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 2222 1110000 126789999999988731 34789999999844 3 4599999988777778888777765
Q ss_pred CCCCcceeEEEECCCCceEEEEecCCh-hhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKG-EQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
+. .++...+|++|++..|.+.... ...+. ....+..++|+|+++++.+.+.++
T Consensus 138 ~~---p~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~~~-------- 191 (228)
T 1ezi_A 138 HH---PLKTLLQINNGEYAPMRHLSDLEQPRQQ---------------LPQAFRPNGAIYINDTASLIANNC-------- 191 (228)
T ss_dssp SC---TTSCEEECC--CEEESSCHHHHTCCGGG---------------SCCEEEEEEEEEEEEHHHHHHHTS--------
T ss_pred CC---cceeeEEcCCCcEeeccccccccCCccc---------------CchhheeeeEEEEEeHHHHhhCCc--------
Confidence 42 1233334778999888662110 00000 001245678999999987754321
Q ss_pred hhhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHhccCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~~~ 366 (372)
+ .+.++.++..+ ..|.|||||+||..|+..+..+
T Consensus 192 ~----------~g~~v~~~~~~~~~~~dIdtpeDl~~a~~~l~~~ 226 (228)
T 1ezi_A 192 F----------FIAPTKLYIMSHQDSIDIDTELDLQQAENILNHK 226 (228)
T ss_dssp S----------CCSSCEEEECCTGGGCCCCSHHHHHHHHHHHC--
T ss_pred c----------cCCceEEEEeCcccccCCCCHHHHHHHHHHHHhc
Confidence 0 16688888886 4799999999999999877654
No 36
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=99.88 E-value=1.4e-22 Score=185.23 Aligned_cols=221 Identities=13% Similarity=0.087 Sum_probs=144.9
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC-CCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS-NISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~-Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
++|.+||||||.|+||+ ..+||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+.+.+++...+
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~-------- 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI-------- 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTS--------
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhC--------
Confidence 45899999999999996 3579999999997 9999999999998 899999999988766655543211
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCc-ccHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYR-MDYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~-~dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
+. .+.++. .+ .|..+++++++..+.. ..+.++++.||. ++. .++.++++.|.+.++ ++++.+..+
T Consensus 71 ~~-~v~~~~-----~~----~~~~~sv~~al~~~~~-~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~~~~~~ 137 (228)
T 2yc3_A 71 DV-DLSFAI-----PG----KERQDSVYSGLQEIDV-NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLGVPAKA 137 (228)
T ss_dssp SS-EEEEEC-----CC----SSHHHHHHHHHTTSCT-TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred CC-cEEEEC-----CC----CCHHHHHHHHHHhhcc-CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEEEeccc
Confidence 10 133331 11 5888999999877642 236788999997 444 459999999887654 444555332
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~ 324 (372)
++..+|+++.|.++.+++. .+.. ...|+|+.+.|.+.+.....+ .-+.
T Consensus 138 ------~~~~~~~~~~v~~~~~~~~------------------------~~~~-~~~~~f~~~~l~~~~~~~~~~-~~~~ 185 (228)
T 2yc3_A 138 ------TIKEVNSDSLVVKTLDRKT------------------------LWEM-QTPQVIKPELLKKGFELVKSE-GLEV 185 (228)
T ss_dssp ------CCCCBCTTSCBCCCCSCCC------------------------CEEE-EEEEEECHHHHHHHHHHHHHH-TCCC
T ss_pred ------eEEEEcCCCceEEecCccc------------------------eEEE-eCCcEEEHHHHHHHHHHHHhc-CCCc
Confidence 1122455556554322110 1232 348999987776655432111 1123
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~ 365 (372)
.+.+..+.+.|.++..+..+..|+|||||+||..|+..+..
T Consensus 186 ~~~~~~l~~~g~~v~~~~~~~~~~dIdtpeDl~~a~~~l~~ 226 (228)
T 2yc3_A 186 TDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE 226 (228)
T ss_dssp CSTTHHHHHSSSCCEEEECCTTCCCCCSHHHHHHHHHHHTC
T ss_pred ccHHHHHHHcCCceEEEeCCccccCcCCHHHHHHHHHHHhh
Confidence 56666666668888766656679999999999999887654
No 37
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.87 E-value=1.2e-22 Score=187.31 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=142.5
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++.+..+++ +|+|++.. +.+.+++
T Consensus 1 m~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i~~~~------------- 62 (232)
T 2dpw_A 1 MRPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGLVPAP------------- 62 (232)
T ss_dssp CCCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSCSSCC-------------
T ss_pred CceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHHhhhc-------------
Confidence 358999999999 77777666689999999997 999999999999998 88887643 4332221
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCcc--CcccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHL--YRMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l--~~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
+ +.+ +. ..|++++|++++..+. +.|+|++||+. ...++.++++ | +.++++++.+.+.++.
T Consensus 63 -~-~~~------~~----~~g~~~~i~~a~~~~~----~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~~~~~~ 124 (232)
T 2dpw_A 63 -A-LTL------PD----RGGLLENLEQALEHVE----GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIVPKEAV 124 (232)
T ss_dssp -S-EEE------CC----CSSHHHHHHHHHHTCC----SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEEEHHHH
T ss_pred -C-eEe------cC----CCCHHHHHHHHHHHcC----CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEeeccch
Confidence 1 333 11 3799999999987663 68999999993 3455899998 6 6677888777663221
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhh-----CCC-
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDK-----FPG- 319 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~-----~~~- 319 (372)
...|+.+ .++|+.+.||| .+++|+|+|+++.+..+.+.. .++
T Consensus 125 -~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~ 172 (232)
T 2dpw_A 125 -EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALPLARRVVALRKR 172 (232)
T ss_dssp -HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHHHHHHHHHTTTC
T ss_pred -hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHHHHHHHHHhccC
Confidence 1234322 24577776653 468999999999876443211 010
Q ss_pred ------------------CCChhhhhHHHhhh-CCCcEEEEEEc--CeEeeCCCHHHHH
Q 017422 320 ------------------ANDFGSEVIPGATS-IGMRVQAYLYD--GYWEDIGTIEAFY 357 (372)
Q Consensus 320 ------------------~~~~~~dvi~~li~-~g~~V~a~~~~--g~w~DIgT~ed~~ 357 (372)
.....+++++.++. .|.++.++.++ +.|.|||||+||.
T Consensus 173 P~~~~~~~~~~~l~~~~~ge~~l~~~~~~~~~~~g~~v~~v~~~~~~~~~dIdtpeDl~ 231 (232)
T 2dpw_A 173 PLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDLV 231 (232)
T ss_dssp HHHHHHHHCHHHHHHHHHTCCCHHHHHHHHHHHHSSCEEEEECSCGGGTCCCCSHHHHC
T ss_pred HHHHHHHHCHHHHHHHHhccCCHHHHHHHHHHHhCcEEEEEecCChhhccCCCChhhcc
Confidence 11235677766653 36789999994 5699999999984
No 38
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.84 E-value=9.1e-20 Score=167.71 Aligned_cols=222 Identities=12% Similarity=0.148 Sum_probs=144.4
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
+++|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ +.. +.
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~------ 72 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPL-AN------ 72 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGG-GG------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHh-cC------
Confidence 466899999999999997 3479999999997 99999999999987 89999999987665544 221 11
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
...+.++. .+ .|..++++.++..+. ..+.+++++||+.+ .. .+.++++.+.+.+++. +++.+..
T Consensus 73 --~~~v~~~~-----~~----~g~~~~i~~al~~~~--~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~~~~~~ 138 (236)
T 1i52_A 73 --HPQITVVD-----GG----DERADSVLAGLKAAG--DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-ILAAPVR 138 (236)
T ss_dssp --CTTEEEEE-----CC----SSHHHHHHHHHHTST--TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EEEEECC
T ss_pred --CCCEEEEC-----CC----CCHHHHHHHHHHhcC--CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EEEEecc
Confidence 11143332 11 488899999887663 24689999999844 44 4888988876654333 3334432
Q ss_pred CCCCcceeEEEECCC-CceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCC
Q 017422 244 EKRATAFGLMKIDEE-GRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGAND 322 (372)
Q Consensus 244 ~~~~~~~g~v~id~~-g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~ 322 (372)
+ .+ ..++++ |++....+. . .-+..-+.++|+.+.+.++++........
T Consensus 139 ~----~~--~~~~~~~~~i~~~~~~---~----------------------~i~~~~~p~~f~~~~l~~~~~~~~~~g~~ 187 (236)
T 1i52_A 139 D----TM--KRAEPGKNAIAHTVDR---N----------------------GLWHALTPQFFPRELLHDCLTRALNEGAT 187 (236)
T ss_dssp S----CE--EEECTTSSSEEEEECC---T----------------------TCEEEEEEEEEEHHHHHHHHHHHHHTTCC
T ss_pred c----cE--EEEcCCCCceeeccCh---H----------------------hheeeeCCceecHHHHHHHHHHHHhcCCC
Confidence 2 11 123444 565433211 0 11222356788887776665432111111
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCC
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKK 366 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~ 366 (372)
..+....+...+.++..+..++.|+|||||+||..|+..+.++
T Consensus 188 -~td~~~~~~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~~~~~ 230 (236)
T 1i52_A 188 -ITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRT 230 (236)
T ss_dssp -CCSHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHCC-
T ss_pred -cccHHHHHHHcCCCEEEEecCccccccCCHHHHHHHHHHHHHh
Confidence 1222222222367888888888899999999999999887654
No 39
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.81 E-value=7.6e-19 Score=161.04 Aligned_cols=215 Identities=16% Similarity=0.216 Sum_probs=139.6
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhH-HHHHHHhhhcccCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASL-NRHLSRAYASNMGGYK 166 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i-~~~l~~~~~~~l~~~~ 166 (372)
.|.|||||||.|+||+. .+||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+ .+++. +
T Consensus 13 ~~~aiILAaG~s~Rm~~---~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~----------~ 78 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSE---NVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEVVEKRVF----------H 78 (234)
T ss_dssp CEEEEEEECCCCGGGCC---SSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHHHHTTCC----------C
T ss_pred cCeEEEEcCcchhhcCC---CCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHhc----------c
Confidence 48999999999999972 469999999997 99999999999998 899999998766432 21110 0
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEecCC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~ 244 (372)
.. .+... . .+ .+..++++.++..+.+...+.+++++||. +... .+.++++.+.+.++ .+.+.+..+
T Consensus 79 ~~-~~~~~---~--gg----~~~~~sv~~al~~~~~~~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~~--~i~~~~~~~ 146 (234)
T 1vpa_A 79 EK-VLGIV---E--GG----DTRSQSVRSALEFLEKFSPSYVLVHDSARPFLRKKHVSEVLRRARETGA--ATLALKNSD 146 (234)
T ss_dssp TT-EEEEE---E--CC----SSHHHHHHHHHHHHGGGCCSEEEEEETTSCCCCHHHHHHHHHHHHHHSE--EEEEEECCS
T ss_pred CC-ceEEe---C--CC----CcHHHHHHHHHHHhhhcCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC--EEEEEecCC
Confidence 11 12111 0 11 23778899988877431235688889998 4454 58999998876543 333444322
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~ 324 (372)
++..++++| | .+.++.. .+..-..++|+...+.+++.... +.
T Consensus 147 ------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~~~-----~~ 188 (234)
T 1vpa_A 147 ------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHENGG-----EW 188 (234)
T ss_dssp ------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTTCC-----CC
T ss_pred ------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHhcC-----CC
Confidence 122345667 6 6554310 11112345788888876665311 11
Q ss_pred hhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 325 SEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
.+....+...+.++..+..++.|.|||||+||..|+..+..++
T Consensus 189 ~~~~~~~~~~g~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 231 (234)
T 1vpa_A 189 ADDTEPVQKLGVKIALVEGDPLCFKVTFKEDLELARIIAREWE 231 (234)
T ss_dssp SSSHHHHHTTTCCCEEEECCGGGCCCCSTTHHHHHHHHHHHHC
T ss_pred CcHHHHHHHcCCcEEEEECCchhcCCCCHHHHHHHHHHHhccc
Confidence 2222222233667888777778999999999999998776544
No 40
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.81 E-value=3.1e-19 Score=163.92 Aligned_cols=216 Identities=13% Similarity=0.146 Sum_probs=137.4
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
+++.|||||||.||||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ +.+.+.+++.. + +
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~--~~~~i~~~~~~-~--g----- 64 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVST--DHDEIENVAKQ-F--G----- 64 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEE--SCHHHHHHHHH-T--T-----
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEEC--ChHHHHHHHHH-c--C-----
Confidence 45889999999999993 5999999997 99999999999998 69999999 45667666643 1 1
Q ss_pred CCCcEEEe-ecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHcCCCEEEEEEecC
Q 017422 167 NEGFVEVL-AAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 167 ~~~~v~il-~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
++++ .......+ ..+..++|..++..+. ..+.+++++||..+ . .++.++++.|.+.+++.++.+.+..
T Consensus 65 ----~~~~~~~~~~~~~---~~~~~~~v~~al~~~~--~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~~~~~ 135 (229)
T 1qwj_A 65 ----AQVHRRSSETSKD---SSTSLDAIVEFLNYHN--EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRH 135 (229)
T ss_dssp ----CEEEECCGGGSST---TCCHHHHHHHHHTTCT--TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEEC
T ss_pred ----CEEEeChhhhcCC---CCcHHHHHHHHHHhcC--CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEEeecc
Confidence 2222 11100011 1344588888876652 35789999999944 4 4599999999888888665554432
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
+ ...+++ .| + +..|.++........ +........+..++|+|+++++.| ++.
T Consensus 136 ~--p~~~~v--~~--~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~n~giY~~~~~~l---~~~-------- 187 (229)
T 1qwj_A 136 Q--FRWSEI--QK--G-VREVTEPLNLNPAKR----------PRRQDWDGELYENGSFYFAKRHLI---EMG-------- 187 (229)
T ss_dssp C--CEECCC--CS--S-TTCCCCBSSSBTTBC----------CCTTTSCCEEEEEEEEEEEEHHHH---HTT--------
T ss_pred C--hhHhhc--cc--c-ccccccccccccccc----------cCCCCCCceEEEeeEEEEEEHHHh---ccc--------
Confidence 2 222322 22 2 222322111100000 000000013577999999999887 111
Q ss_pred hhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHHHHHhccC
Q 017422 324 GSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~~ 365 (372)
+..+..+..+..+ ++|.||||++||..|+..+..
T Consensus 188 --------~~~g~~~~~~~~~~~~~~dIdt~~Dl~~a~~~~~~ 222 (229)
T 1qwj_A 188 --------YLQGGKMAYYEMRAEHSVDIDVDIDWPIAEQRVLR 222 (229)
T ss_dssp --------CSSCSSEEEEECCGGGCCCHHHHCSHHHHHHHHHH
T ss_pred --------cccCCeEEEEECCcccccCCCCHHHHHHHHHHHHH
Confidence 1225566432555 689999999999999887654
No 41
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.81 E-value=9.2e-19 Score=155.92 Aligned_cols=189 Identities=16% Similarity=0.205 Sum_probs=131.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+|+++|+|++++..+.+.+++..
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----------- 66 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVEL----------- 66 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSCC-----------
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc-----------
Confidence 34889999999999996 69999999997 99999999999999999999999877766655432
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC--cccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY--RMDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~--~~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
.+ +.++.. +.+..|++++++.++..+.. ..+.+++++||+.+ ..++.++++. +.++++++...
T Consensus 67 ~~-~~~~~~------~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~~~----- 131 (199)
T 2waw_A 67 DG-LDIVLV------DDAGLGCSSSLKSALTWVDP-TAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVCEY----- 131 (199)
T ss_dssp TT-SEEEEC------CCCCTTCCCHHHHHHHTSCT-TCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEEEE-----
T ss_pred CC-CEEEEC------CCcccCHHHHHHHHHHhhhc-cCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 11 233321 11237999999999877631 34789999999965 3458888887 45566543221
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
+|+ + . .-++|+++.+..+.. . .+...
T Consensus 132 ------------~g~-------~-~-----------------------------~P~~~~~~~l~~~~~-~-~~~~~--- 157 (199)
T 2waw_A 132 ------------ANG-------I-G-----------------------------HPFWVSRGVFGDLAE-L-HGDKG--- 157 (199)
T ss_dssp ------------TTE-------E-E-----------------------------EEEEEEGGGHHHHHT-C-SSTTC---
T ss_pred ------------CCc-------c-c-----------------------------CCEEEcHHHHHHHHh-c-CCCHH---
Confidence 111 0 0 013778888776543 1 22111
Q ss_pred hhHHHhhh-CCCcEEEEEEc-CeEeeCCCHHHHHHHHHhcc
Q 017422 326 EVIPGATS-IGMRVQAYLYD-GYWEDIGTIEAFYNANLGIT 364 (372)
Q Consensus 326 dvi~~li~-~g~~V~a~~~~-g~w~DIgT~ed~~~An~~l~ 364 (372)
+..+++ .+.++..+.++ +.|.|||||+||..++..+.
T Consensus 158 --~~~~l~~~~~~v~~~~~~~~~~~dIdtpeDl~~~~~~~~ 196 (199)
T 2waw_A 158 --VWRLIESGRHGVRRIRVDADVPLDVDTWDDYERLLASVV 196 (199)
T ss_dssp --HHHHHHSSSSCEEEEECSSCCCCCCSSHHHHHHHHHHHH
T ss_pred --HHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHHh
Confidence 223333 24678888884 58999999999999987653
No 42
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.81 E-value=5.2e-19 Score=157.44 Aligned_cols=188 Identities=15% Similarity=0.212 Sum_probs=127.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
++|.+||||||.|+||+ .||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+++..
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~----------- 66 (197)
T 2wee_A 4 TQITGVVLAAGRSNRLG-----TPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMAL----------- 66 (197)
T ss_dssp SEEEEEEEECCCCTTTS-----SCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSCC-----------
T ss_pred CceEEEEECCCCcccCC-----CCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhcc-----------
Confidence 45889999999999994 79999999997 99999999999999999999999887766655432
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-c-ccHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-R-MDYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~-~dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
.+ +.++.. +.|..|++++++.++..+.. ..+.++|++||+.+ . ..+.++++. +.++++++...
T Consensus 67 ~~-~~~~~~------~~~~~g~~~~i~~al~~~~~-~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~~~~----- 131 (197)
T 2wee_A 67 DG-TDVVVV------EDVERGCAASLRVALARVHP-RATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMVCRY----- 131 (197)
T ss_dssp TT-SEEEEC------C----CCHHHHHHHHTTSCT-TEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEEEEE-----
T ss_pred CC-CEEEEC------CCcccCHHHHHHHHHHHhcc-cCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEEEec-----
Confidence 11 233321 12337999999999876631 24689999999944 4 458888877 45555432211
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
+|+. . . -++|+++.+..+. .. .+ +
T Consensus 132 ------------~g~~-------~--------------------------~----P~~~~~~~l~~l~-~~-~~--~--- 155 (197)
T 2wee_A 132 ------------ADGV-------G--------------------------H----PFWFSRTVFGELA-RL-HG--D--- 155 (197)
T ss_dssp ------------TTEE-------E--------------------------E----EEEEEGGGHHHHH-TC-CS--T---
T ss_pred ------------CCCc-------C--------------------------C----CEEECHHHHHHHH-hC-CC--C---
Confidence 1110 0 0 1267888887654 22 21 1
Q ss_pred hhHHHhhhC-CCcEEEEEEc-CeEeeCCCHHHHHHHHHhc
Q 017422 326 EVIPGATSI-GMRVQAYLYD-GYWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 326 dvi~~li~~-g~~V~a~~~~-g~w~DIgT~ed~~~An~~l 363 (372)
.-+..+++. +.++..+.++ +.|.|||||+||..++..+
T Consensus 156 ~~~~~~l~~~~~~v~~v~~~~~~~~dIdtpeDl~~~~~~~ 195 (197)
T 2wee_A 156 KGVWKLVHSGRHPVRELAVDGCVPLDVDTWDDYRRLLESV 195 (197)
T ss_dssp THHHHHHHCTTSCEEEEECSSCCCCCCSSHHHHHHHHTC-
T ss_pred hhHHHHHHhCcccEEEEEcCcccccCCCCHHHHHHHHHHh
Confidence 122334432 4578888874 5899999999999988654
No 43
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=2.9e-19 Score=159.63 Aligned_cols=130 Identities=23% Similarity=0.369 Sum_probs=94.2
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|+|||||||.|+||+| +||+|+|++|+ |||+|+++.+.++|+++|+|+++++.+.+.+++...+.+. .+
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~------~~ 69 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDY------KN 69 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTT------TE
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCC------CC
Confidence 6899999999999987 79999999997 9999999999999999999999999888988888754321 01
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC--cccHHHHHHHHHH-----cCCCEEEEEEec
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY--RMDYERFIQAHRE-----TDADITVAALPM 242 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~--~~dl~~ll~~h~~-----~~aditi~~~~~ 242 (372)
+.++. . . ..|++++|+.++..+ .+.++++.||+.+ ..++.++++.|.+ .+.+.++.+.+.
T Consensus 70 -~~~~~---~-~----~~g~~~si~~al~~~----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~ 136 (196)
T 3rsb_A 70 -IVVID---T-S----GKGYIEDLNECIGYF----SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALAVMIPK 136 (196)
T ss_dssp -EEE----------------CCCCCTTTTTC----SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEEEEEET
T ss_pred -EEEEE---C-C----CCCcHHHHHHHHHhC----CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEEEEEEc
Confidence 33332 1 1 267888888776555 4789999999943 3559999999987 667777677664
Q ss_pred C
Q 017422 243 D 243 (372)
Q Consensus 243 ~ 243 (372)
.
T Consensus 137 ~ 137 (196)
T 3rsb_A 137 E 137 (196)
T ss_dssp T
T ss_pred c
Confidence 3
No 44
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.79 E-value=1.3e-18 Score=160.72 Aligned_cols=210 Identities=13% Similarity=0.041 Sum_probs=129.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
|++.|||||||.||||++ . ||+|+|++|+ |||+|+++. ..++++|+|++++ .+.+ +..
T Consensus 24 M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~---~~~~-~~~----------- 81 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPP---GAEP-PKG----------- 81 (236)
T ss_dssp CCCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECT---TCCC-CTT-----------
T ss_pred CceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCH---HHHH-hhc-----------
Confidence 446799999999999974 3 9999999997 999999999 6789999999985 1111 110
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEecCCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEK 245 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~ 245 (372)
.+ +.++. +. .|..++++.++..++ .+.+++++||. ++.. .+..+++.+.+.+ ..+.+.+..+
T Consensus 82 ~~-v~~~~-----~~----~~~~~~i~~al~~~~---~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~~~~~- 145 (236)
T 2px7_A 82 LG-AVFLE-----GG----ATRQASVARLLEAAS---LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVLPVPD- 145 (236)
T ss_dssp CS-CEEEE-----CC----SSHHHHHHHHHHHCC---SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEEECCS-
T ss_pred CC-cEEEe-----CC----CchHHHHHHHHHHcC---CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEEecCC-
Confidence 01 33321 11 467889998887663 46799999997 4454 4899999887654 3344444322
Q ss_pred CCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhh
Q 017422 246 RATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGS 325 (372)
Q Consensus 246 ~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~ 325 (372)
. . ...+ +|++.++.++.. -+.+. ..++|+++.+.++++....... ...
T Consensus 146 -~--~--~~~~-~G~v~~~~~~~~------------------------~~~~~-~~~~f~~~~l~~~~~~~~~~g~-~~~ 193 (236)
T 2px7_A 146 -T--L--MAPE-GEAYGRVVPREA------------------------FRLVQ-TPQGFFTALLREAHAYARRKGL-EAS 193 (236)
T ss_dssp -E--E--EEEC-SSSCEEEECGGG------------------------CEEEC-SCEEEEHHHHHHHHHHHHHHTC-CCS
T ss_pred -c--E--EEec-CCeEEecCChHh------------------------hcccc-CCeEEcHHHHHHHHHHHHhcCC-Cch
Confidence 1 1 1124 788876654211 01112 2457888877655543211001 112
Q ss_pred hhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhccCCC
Q 017422 326 EVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKP 367 (372)
Q Consensus 326 dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l~~~~ 367 (372)
+....+...+.++..+..++.|.|||||+||..|+..+..++
T Consensus 194 d~~~ll~~~~~~v~~v~~~~~~~dIdtpeDl~~a~~~l~~~~ 235 (236)
T 2px7_A 194 DDAQLVQALGYPVALVEGEATAFKITHPQDLVLAEALARVWS 235 (236)
T ss_dssp SHHHHHHHTTCCCEEEECCTTCCCCCSHHHHHHHHHHHTC--
T ss_pred hHHHHHHHcCCcEEEEECCccccCCCCHHHHHHHHHHHHhcc
Confidence 222222223678999998889999999999999998876654
No 45
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=99.77 E-value=1.3e-17 Score=168.31 Aligned_cols=245 Identities=12% Similarity=0.103 Sum_probs=165.0
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC-CCcchhHHHHHHhhcC----C--CCeEEEEecCChhhHHHHHHHhhhc
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNS----N--ISKIYVLTQFNSASLNRHLSRAYAS 160 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg-G~~pLId~~l~~l~~~----G--i~~I~Vvt~~~~~~i~~~l~~~~~~ 160 (372)
.+|.+||||||.||||+ .+.||+|+||+ |+ |+++++++.+... | |.-+++...+..+.+.+|+.+...+
T Consensus 78 ~k~~vviLAGGlGTRLg---~~~PK~llpv~~gk-p~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~~f 153 (469)
T 2icy_A 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYTNS 153 (469)
T ss_dssp TTEEEEEEECCBSGGGT---CCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGTTS
T ss_pred ccceEEEEcCCccccCC---CCCCccccccCCCC-CHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcccC
Confidence 66999999999999994 57999999998 75 9999999999887 5 5655555556789999999874322
Q ss_pred ccCCCCCCCcEEEeeccc-------------CCC---CCC-CCCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCc
Q 017422 161 NMGGYKNEGFVEVLAAQQ-------------SPE---NPN-WFQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR 218 (372)
Q Consensus 161 ~l~~~~~~~~v~il~~~~-------------~~~---~~~-~~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~ 218 (372)
++ . +.++.... ++. ... .+.|||+.+... ++.+.+.+.++|+|+++|.+..
T Consensus 154 G~------~-I~~f~Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL~~ 226 (469)
T 2icy_A 154 NV------D-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNLGA 226 (469)
T ss_dssp SS------C-EEEEECCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBTTC
T ss_pred Cc------e-EEEEEecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcCCc
Confidence 22 1 22221000 000 001 258999998764 2233223568999999999987
Q ss_pred ccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCc--eEEEEecCChhhhhhhccccccccCCchhcccCCce
Q 017422 219 MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYI 296 (372)
Q Consensus 219 ~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 296 (372)
.....++.+|.++++++++.+.+... +...||++... +|+ ++++.|+|....... ........
T Consensus 227 ~~d~~ll~~~~~~~a~~t~~v~~k~~-~~~~~Gvl~~~-dg~~~vvE~~e~p~~~~~e~-------------k~~~~~~~ 291 (469)
T 2icy_A 227 IVDLTILKHLIQNKNEYCMEVTPKTL-ADVKGGTLISY-EGKVQLLEIAQVPDEHVNEF-------------KSIEKFKI 291 (469)
T ss_dssp CCCHHHHHHHHHHTCSEEEEEEECCT-TCCSSCEEEEE-TTEEEEECGGGSCGGGHHHH-------------HSSSSCCE
T ss_pred ccCHHHHHHHHHcCCCeeEEEEEecc-CCCceeEEEEE-CCEEEEEEEeccChhhhhhh-------------ccccccce
Confidence 54347999999999999999888654 23578887752 454 666677776431100 00012357
Q ss_pred EEEEEEEEeHHHHHHHHhhhC---C--------------CCCChhhhhHHHhhhCCCcEEEEEEc-CeEeeCCCHHHHHH
Q 017422 297 ASMGIYVISKDVMLNLLRDKF---P--------------GANDFGSEVIPGATSIGMRVQAYLYD-GYWEDIGTIEAFYN 358 (372)
Q Consensus 297 ~~~Giyv~~~~~l~~ll~~~~---~--------------~~~~~~~dvi~~li~~g~~V~a~~~~-g~w~DIgT~ed~~~ 358 (372)
.++|+|+|+.+++.++++... + .-..+..|+++.. .+..++.++ .+|.++.+..||..
T Consensus 292 ~N~g~y~~~~~~L~~i~~~~~~~lp~~v~~K~id~~~~~klE~~~~D~~~~~----~~~~~~~V~R~~F~PvKn~~dll~ 367 (469)
T 2icy_A 292 FNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFF----DNAIGVNVPRSRFLPVKASSDLLL 367 (469)
T ss_dssp EEEEEEEEEHHHHHHHHHTTCCCCCCBCCEEEETTEEEECCBCCGGGGGGGS----TTCEEEECCGGGCCBCCSHHHHHH
T ss_pred eeEEEEEEcHHHHHHHHhcccCCchhhccceecCCCceEeehHhhHHHHHhc----CCeEEEEechhHcCcCCCHHHHHH
Confidence 799999999999988876521 1 0012233444322 356666664 47999999999999
Q ss_pred HHHh
Q 017422 359 ANLG 362 (372)
Q Consensus 359 An~~ 362 (372)
++..
T Consensus 368 ~~s~ 371 (469)
T 2icy_A 368 VQSD 371 (469)
T ss_dssp HHST
T ss_pred HHHH
Confidence 9876
No 46
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=99.77 E-value=3.1e-17 Score=151.42 Aligned_cols=217 Identities=19% Similarity=0.179 Sum_probs=150.7
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCC-CCeEEEEecCCh-hhHHHHHHHhhhcccCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSN-ISKIYVLTQFNS-ASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~G-i~~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~ 166 (372)
++.+||||||.|+||+. ..||+|+|++|+ |||+|+++.+..++ +++|+|++++.. +.+.+++..
T Consensus 7 ~~~aIIlAaG~g~Rmg~---~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLAV---GVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------- 72 (231)
T ss_dssp CEEEEEECCCCCTTTCS---SSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG----------
T ss_pred ceEEEEECCCCCccCCC---CCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC----------
Confidence 47899999999999963 579999999997 99999999999874 899999998765 334333321
Q ss_pred CCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhc-CCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEecC
Q 017422 167 NEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEH-NVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~-~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
.+.++. .+ .+..+++++++..+.+. ..+.+||+.||. +... .+.++++.+.+ +.+..+.+.++.
T Consensus 73 ---~v~~v~-----gg----~~r~~sv~~gl~~~~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~~p~~ 139 (231)
T 3q80_A 73 ---RAMIVA-----GG----SNRTDTVNLALTVLSGTAEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPVLPLS 139 (231)
T ss_dssp ---GCEEEE-----CC----SSHHHHHHHHHGGGC---CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEEECCS
T ss_pred ---CeEEEc-----CC----CchHHHHHHHHHHhhhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEEEecc
Confidence 133332 11 24468899998777531 246789999998 4444 48899988765 356667777765
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCC-CCC
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPG-AND 322 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~-~~~ 322 (372)
+ .. ...|++|.|.+..+. ... +.+.+ .+.|+.+.|.+.+++...+ ...
T Consensus 140 d--t~----~~~~~~g~v~~~~~r---~~l---------------------~~~qT-Pq~F~~~~L~~a~~~~~~~n~~~ 188 (231)
T 3q80_A 140 D--TI----KAVDANGVVLGTPER---AGL---------------------RAVQT-PQGFTTDLLLRSYQRGSLDLPAA 188 (231)
T ss_dssp S--CE----EEECTTSBEEECCCG---GGE---------------------EEECS-CEEEEHHHHHHHHHHHTC-----
T ss_pred C--CE----EEEcCCCcEEEecch---hhe---------------------EEEcC-CcEEEHHHHHHHHHHHHhhcCCC
Confidence 4 11 125778887765432 111 23343 5899999888777655431 122
Q ss_pred hhhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhc
Q 017422 323 FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 323 ~~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l 363 (372)
+.+|....+...|.+|..++-+..++.|.||+||..|+..+
T Consensus 189 ~~TD~~~~~~~~g~~v~~v~g~~~n~kIt~p~Dl~~ae~~l 229 (231)
T 3q80_A 189 EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIV 229 (231)
T ss_dssp CCSSSHHHHHHTTCCCEEEECCGGGCCCCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHcCCcEEEEECCccccCcCCHHHHHHHHHHh
Confidence 34666666656688999887776799999999999998865
No 47
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.73 E-value=9.4e-18 Score=150.65 Aligned_cols=185 Identities=18% Similarity=0.246 Sum_probs=115.5
Q ss_pred ceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCC
Q 017422 89 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE 168 (372)
Q Consensus 89 ~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~ 168 (372)
+|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++..+.+.+++. .
T Consensus 2 ~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~~~~~------------~ 60 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEMLPLLM------------D 60 (197)
T ss_dssp CEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHGGGCT------------T
T ss_pred ceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHHHHhc------------C
Confidence 4889999999999997 39999999997 9999999999887 899999877554433221 1
Q ss_pred CcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCcc-cHHHHHHHHHHcCCCEEEEEEecCCCC
Q 017422 169 GFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRM-DYERFIQAHRETDADITVAALPMDEKR 246 (372)
Q Consensus 169 ~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~-dl~~ll~~h~~~~aditi~~~~~~~~~ 246 (372)
+ + ++. ++.|..|++++|+.++..+.+ .+.++|++||+ +... .+.++++.+ +.++++++...
T Consensus 61 ~-~-~v~------~~~~~~G~~~si~~al~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~------ 123 (197)
T 3d5n_A 61 Q-I-VIY------NPFWNEGISTSLKLGLRFFKD--YDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH------ 123 (197)
T ss_dssp S-C-EEE------CTTGGGCHHHHHHHHHHHTTT--SSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE------
T ss_pred C-E-EEE------CCCCCCCHHHHHHHHHHhhcc--CCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe------
Confidence 2 2 221 122347999999999887742 36899999999 4454 488888876 55555443321
Q ss_pred CcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhh
Q 017422 247 ATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSE 326 (372)
Q Consensus 247 ~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~d 326 (372)
+|+. .. + .+|+++.+..+. .. .+..+ ...
T Consensus 124 -----------~g~~----~~--------------------------P-------~~~~~~~l~~l~-~l-~g~~~-~~~ 152 (197)
T 3d5n_A 124 -----------KGER----GN--------------------------P-------VLISKSLFNEIE-KL-RGDVG-ARV 152 (197)
T ss_dssp -----------TTEE----CS--------------------------C-------EEEEHHHHHHHH-HC-CTTCC-THH
T ss_pred -----------CCcc----cC--------------------------C-------EEECHHHHHHHH-cc-CCCcc-HHH
Confidence 1110 00 1 277888887655 22 22211 123
Q ss_pred hHHHhhhCCCcEEEEEEc--CeEeeCCCHHHHHHHHHhccC
Q 017422 327 VIPGATSIGMRVQAYLYD--GYWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 327 vi~~li~~g~~V~a~~~~--g~w~DIgT~ed~~~An~~l~~ 365 (372)
++. ..+.++..+..+ +.|.||+||+||..++..+..
T Consensus 153 ~l~---~~~~~v~~v~~~~~~~~~dIdTpeDl~~~~~~~~~ 190 (197)
T 3d5n_A 153 ILN---KIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHPL 190 (197)
T ss_dssp HHT---TSCGGGEEEEECCGGGTCCTTTC------------
T ss_pred HHH---hCccCeEEEEcCCCCcccCCCCHHHHHHHHHhhcc
Confidence 332 224567777775 468999999999998876554
No 48
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.73 E-value=9.2e-18 Score=151.19 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=113.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCC
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN 167 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~ 167 (372)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++..+ +++. +
T Consensus 13 ~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~~~~-----~------ 71 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---FSFL-----N------ 71 (201)
T ss_dssp SCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---GGGG-----T------
T ss_pred cCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---hhcC-----C------
Confidence 44789999999999997 69999999997 9999999999988 9999999987654 1211 1
Q ss_pred CCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHH-HHHHHHHcCCCEEEEEEecCC
Q 017422 168 EGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YER-FIQAHRETDADITVAALPMDE 244 (372)
Q Consensus 168 ~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~-ll~~h~~~~aditi~~~~~~~ 244 (372)
+.++.. +.+..|++++|+.++..+. .+.++|++||+.+ ..+ +.. ++ +.++++.
T Consensus 72 ---~~~v~~------~~~~~g~~~~i~~al~~~~---~~~~lv~~~D~P~i~~~~i~~~l~------~~~~~v~------ 127 (201)
T 2e8b_A 72 ---APVVLD------EFEESASIIGLYTALKHAK---EENVFVLSGDLPLMKKETVLYVLE------NFKEPVS------ 127 (201)
T ss_dssp ---CCEEEC------CCSSCCHHHHHHHHHHHCS---SSEEEEEETTCTTCCHHHHHHHHH------TCCSSEE------
T ss_pred ---ceEEec------CCCCCCcHHHHHHHHHHcC---CCCEEEEeCCcCcCCHHHHHHHHh------cCCEEEE------
Confidence 223321 1123799999999987763 4789999999955 443 666 65 1232211
Q ss_pred CCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChh
Q 017422 245 KRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFG 324 (372)
Q Consensus 245 ~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~ 324 (372)
.+ +|+ .....|+| |+++++..+......+. ...
T Consensus 128 ----------~~-~g~----------------------------------~~p~~giy-~~~~~~~~l~~~~~~g~-~~~ 160 (201)
T 2e8b_A 128 ----------VA-KTE----------------------------------KLHTLVGV-YSKKLLEKIEERIKKGD-YRI 160 (201)
T ss_dssp ----------EE-ESS----------------------------------SEEEEEEE-EEGGGHHHHHHHHHTTC-CCH
T ss_pred ----------ec-CCc----------------------------------eeeEEEEE-eChhHHHHHHHHHHcCC-chH
Confidence 00 111 14467999 99987764432111221 123
Q ss_pred hhhHHHhhhCCCcEEEEEEc--CeEe--eCCCHHHHHHHHHhc
Q 017422 325 SEVIPGATSIGMRVQAYLYD--GYWE--DIGTIEAFYNANLGI 363 (372)
Q Consensus 325 ~dvi~~li~~g~~V~a~~~~--g~w~--DIgT~ed~~~An~~l 363 (372)
.++++.+ ++..+.++ +.|. |||||+||.+++..+
T Consensus 161 ~~~l~~~-----~~~~~~~~~~~~~~~~dintpedl~~~~~~~ 198 (201)
T 2e8b_A 161 WALLKDV-----GYNEVEIPEELRYTLLNMNTKEDLKRILAIE 198 (201)
T ss_dssp HHHHHHH-----CCEEEECCGGGGGGGCCSCCC----------
T ss_pred HHHHHHC-----CeEEeccccccchhhcCCCCHHHHHHHHHHh
Confidence 5555543 46667774 4699 999999999987654
No 49
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.70 E-value=1.8e-16 Score=142.91 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=86.6
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK 166 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~ 166 (372)
|++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+. . .
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~~----~---~------ 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIYQ----A---S------ 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHHH----T---T------
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHHh----h---c------
Confidence 567899999999999997 379999999997 999999999985 58999999987764321 1 1
Q ss_pred CCCcEEEeecccCCCCCCCC-CCcHHHHHHHHHHHHhcCCceEEEEcCCc-cCccc-HHHHHHHHHHcCCCEE
Q 017422 167 NEGFVEVLAAQQSPENPNWF-QGTADAVRQYLWLFEEHNVLEFLVLAGDH-LYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 167 ~~~~v~il~~~~~~~~~~~~-~Gta~al~~a~~~l~~~~~~~~Lvl~gD~-l~~~d-l~~ll~~h~~~~adit 236 (372)
+ +.++.. +.+. .|++++|+.++..+. .+.++|++||+ +...+ +..+++. +.+++++
T Consensus 65 --~-~~~v~~------~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~ 123 (201)
T 1e5k_A 65 --G-LKVIED------SLADYPGPLAGMLSVMQQEA---GEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVV 123 (201)
T ss_dssp --S-CCEECC------CTTCCCSHHHHHHHHHHHCC---SSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEE
T ss_pred --C-CeEEec------CCCCCCCHHHHHHHHHHhCC---CCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEE
Confidence 1 223211 1112 699999999987763 47899999999 44544 7888875 3445543
No 50
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1e-15 Score=155.26 Aligned_cols=242 Identities=13% Similarity=0.106 Sum_probs=155.9
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecC-CCcchhHHHHHHhhcC----CCC-eEEEEec-CChhhHHHHHHHhhh
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNS----NIS-KIYVLTQ-FNSASLNRHLSRAYA 159 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIg-G~~pLId~~l~~l~~~----Gi~-~I~Vvt~-~~~~~i~~~l~~~~~ 159 (372)
..++.+||||||.||||+ ...||+|+||+ |+ ||++++++.+... |+. .++|+++ +..+.+.+++.+...
T Consensus 90 ~~k~avViLAGG~GTRmg---s~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~~ 165 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSMG---CVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYSA 165 (488)
T ss_dssp GGGEEEEEECCCBSGGGT---CCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGCS
T ss_pred cCCceEEEEcCCCcccCC---CCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhccc
Confidence 456889999999999996 46899999998 76 9999999998876 533 3666666 888999999876321
Q ss_pred cccCCCCCCCcEEEeecccC---------------CC---CCC-CCCCcHHHHHH--H---HHHHHhcCCceEEEEcCCc
Q 017422 160 SNMGGYKNEGFVEVLAAQQS---------------PE---NPN-WFQGTADAVRQ--Y---LWLFEEHNVLEFLVLAGDH 215 (372)
Q Consensus 160 ~~l~~~~~~~~v~il~~~~~---------------~~---~~~-~~~Gta~al~~--a---~~~l~~~~~~~~Lvl~gD~ 215 (372)
++ +++....|. +. ... .+.|||+++.. + ++.+.+.+.++++|++||.
T Consensus 166 fg---------~~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn 236 (488)
T 2i5k_A 166 NR---------IRIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN 236 (488)
T ss_dssp SS---------CEEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB
T ss_pred cC---------ceEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc
Confidence 11 112211222 00 011 25799999973 2 4444333578999999999
Q ss_pred cCc-ccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCc--eEEEEecCChhhhhhhccccccccCCchhccc
Q 017422 216 LYR-MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDERAKE 292 (372)
Q Consensus 216 l~~-~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~ 292 (372)
|.. .|+. ++.+|.++++++++.+.+..+ +...||.+..+ +|+ |+++.+.+........ ...
T Consensus 237 L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~-p~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~~~~-------------~~~ 300 (488)
T 2i5k_A 237 LGATVDLK-ILNHMIETGAEYIMELTDKTR-ADVKGGTLISY-DGQVRLLEVAQVPKEHIDEFK-------------NIR 300 (488)
T ss_dssp SSCCCCHH-HHHHHHHSCCSEEEEEEECCG-GGSSSCEEEEE-TTEEEEECGGGSCTTSHHHHT-------------CTT
T ss_pred CCCcccHH-HHHHHHhcCCcEEEEEEEecC-CCCceeEEEEE-CCcEEEEEeccCCHHHHhhcc-------------ccc
Confidence 886 5775 668899999999998887543 23458987654 565 4444344432211000 011
Q ss_pred CCceEEEEEEEEeHHHHHHHHhhhC---C--------C-----C-----CChhhhhHHHhhhCCCcEEEEEEcC-eEeeC
Q 017422 293 MPYIASMGIYVISKDVMLNLLRDKF---P--------G-----A-----NDFGSEVIPGATSIGMRVQAYLYDG-YWEDI 350 (372)
Q Consensus 293 ~~~~~~~Giyv~~~~~l~~ll~~~~---~--------~-----~-----~~~~~dvi~~li~~g~~V~a~~~~g-~w~DI 350 (372)
.....++|+|+|+.+.|.+++.... | . . ..++.|+++.+ .+..++.++. .|.-+
T Consensus 301 ~~~~~Ntgi~~f~~~~L~~~l~~~~~~lp~~v~~K~i~~~~~~~~~~qlE~~~~d~~~~~----~~~~~~~V~R~~F~Pv 376 (488)
T 2i5k_A 301 KFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHF----DGAHGVVVPRSRFLPV 376 (488)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHTTCCCCCCBCCEECCCC-----CEECCBCCGGGGGGGS----SSCEEEEECGGGCCBC
T ss_pred ccCEEEEEEEEEeHHHHHHHHhhccCCCcceecCccccCCCCCCceEEeeehhhhHHhhc----cCceEEEecccccccc
Confidence 2347799999999999988887521 1 0 0 12234444433 2344555532 57788
Q ss_pred CCHHHHHHHHH
Q 017422 351 GTIEAFYNANL 361 (372)
Q Consensus 351 gT~ed~~~An~ 361 (372)
-+..++.-+..
T Consensus 377 Kn~~~ll~~~~ 387 (488)
T 2i5k_A 377 KTCSDLLLVKS 387 (488)
T ss_dssp CSHHHHHHHTS
T ss_pred cCCccHHHHHH
Confidence 88777765544
No 51
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=99.66 E-value=3.9e-15 Score=151.57 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=140.3
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceec---CCCcchhHHHHHHhhc--------CC----CCeEEEEecCChhhHHH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN--------SN----ISKIYVLTQFNSASLNR 152 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpI---gG~~pLId~~l~~l~~--------~G----i~~I~Vvt~~~~~~i~~ 152 (372)
.+|.+||||||.||||+ .+.||+|+|| .|+ |+|+++++.+.+ .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRLg---~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRLG---VAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTTS---CSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccCC---CCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 56999999999999995 4689999999 576 999999999876 36 77777777788999999
Q ss_pred HHHHhhhcccCCCCCCCcEEEeecccC------CCC----------CCCCCCcHHHHHHHHH-----HHHhcCCceEEEE
Q 017422 153 HLSRAYASNMGGYKNEGFVEVLAAQQS------PEN----------PNWFQGTADAVRQYLW-----LFEEHNVLEFLVL 211 (372)
Q Consensus 153 ~l~~~~~~~l~~~~~~~~v~il~~~~~------~~~----------~~~~~Gta~al~~a~~-----~l~~~~~~~~Lvl 211 (372)
|+.+...+++.. ..|.++. |. .++ ...+.|||+.+..... .+.+.+.+.|+|+
T Consensus 177 ~f~~~~~fGl~~----~~I~~f~--Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~ 250 (505)
T 1jv1_A 177 FFTKHKYFGLKK----ENVIFFQ--QGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVY 250 (505)
T ss_dssp HHHHTGGGGSCG----GGEEEEE--CCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEE
T ss_pred HHHhhhhcCCCc----CceEEEE--ecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEE
Confidence 998743333310 0122221 10 000 0014799998876532 2222356899999
Q ss_pred cCCcc-CcccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECCCCc--eEEEEecCChhhhhhhccccccccCCch
Q 017422 212 AGDHL-YRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDE 288 (372)
Q Consensus 212 ~gD~l-~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~~~ 288 (372)
++|.+ ...+...++.+|.++++++++.+.+.. .....+|++..+ +|+ |+++.|+|...... .++
T Consensus 251 n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~-~~~e~~Gvl~~~-dg~~~vvEy~E~p~~~~~~---~~~-------- 317 (505)
T 1jv1_A 251 CVDNILVKVADPRFIGFCIQKGADCGAKVVEKT-NPTEPVGVVCRV-DGVYQVVEYSEISLATAQK---RSS-------- 317 (505)
T ss_dssp ETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECC-STTCSCCEEEEE-TTEEEEECGGGSCHHHHHC---BCT--------
T ss_pred ECCccccccchHHHHHHHHHcCCCEEEEEEEcc-CCccCcceEEEE-CCeEEEEEEeeCCHHHhhh---ccc--------
Confidence 99996 766667899999999999999887622 235788988764 454 56666766532210 000
Q ss_pred hcccCCceEEEEEEEEeHHHHHHHHhh
Q 017422 289 RAKEMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 289 ~~~~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
......+..++|+|+|+.+++.++.+.
T Consensus 318 ~g~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 318 DGRLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp TSSBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred ccccccceeeEEEEEecHHHHHHHHHh
Confidence 001124689999999999999877653
No 52
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.63 E-value=1.2e-14 Score=131.98 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=84.5
Q ss_pred eEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeEEEEecCChhhHHHHHHHhhhcccCCCCCCC
Q 017422 90 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEG 169 (372)
Q Consensus 90 m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~ 169 (372)
|.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +|+|++++ .+.+. .+...+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~~-~~~~~~----------~ 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQAE-KLSSRY----------E 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHHH-HHHTTS----------C
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHHH-HHHHhc----------C
Confidence 689999999999996 69999999997 9999999999987 99999964 33332 222211 1
Q ss_pred cEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-ccc-HHHHHHHHHHcCCCEEEE
Q 017422 170 FVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 170 ~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~d-l~~ll~~h~~~~aditi~ 238 (372)
+.++.. ..+..|..++|+.++..+ .+.+ |+.||+-+ ..+ +..+++.+.+.++++++.
T Consensus 60 -~~~v~d------~~~~~G~~~si~~gl~~~----~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 118 (208)
T 3ngw_A 60 -AEFIWD------LHKGVGSIAGIHAALRHF----GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIP 118 (208)
T ss_dssp -SCEECC------TTCCCSHHHHHHHHHHHH----SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred -CeEEec------CCCCCChHHHHHHHHHHc----CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEE
Confidence 223221 112268889999998777 3577 99999944 544 888998877667776543
No 53
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.63 E-value=6.3e-16 Score=152.06 Aligned_cols=201 Identities=15% Similarity=0.150 Sum_probs=128.5
Q ss_pred CCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhc-CCCCeEEEEecCChhhHHHHHHHhhhcccCCC
Q 017422 87 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLN-SNISKIYVLTQFNSASLNRHLSRAYASNMGGY 165 (372)
Q Consensus 87 ~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~-~Gi~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~ 165 (372)
||+|.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+.+.+++.
T Consensus 1 Mmki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~i~~~~~---------- 65 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITYMKKFTK---------- 65 (371)
T ss_dssp -CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHHHHTTCS----------
T ss_pred CCccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHHHHHHhC----------
Confidence 456899999999999997 2479999999997 999999999998 58999999998 4443322110
Q ss_pred CCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHHHHHHcCCCEEEEEEecC
Q 017422 166 KNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQAHRETDADITVAALPMD 243 (372)
Q Consensus 166 ~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~~h~~~~aditi~~~~~~ 243 (372)
. +.++. .+ .|..++++.++..++ .+.++++.||..+ .. .+.++++.+.+. +.++.+.++.
T Consensus 66 ---~-v~~v~-----~g----~g~~~sv~~aL~~l~---~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~~~~~~ 127 (371)
T 1w55_A 66 ---N-YEFIE-----GG----DTRAESLKKALELID---SEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITPALKVA 127 (371)
T ss_dssp ---S-SEEEE-----CC----SSHHHHHHHHHTTCC---SSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEEEECCC
T ss_pred ---C-CEEEe-----CC----CChHHHHHHHHHhcC---CCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEEEEEee
Confidence 1 23331 11 578899998886653 4789999999944 43 488898877654 3444454532
Q ss_pred CCCCcceeEEEECCCCceEEEEecCChhhhhhhccccccccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCCh
Q 017422 244 EKRATAFGLMKIDEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDF 323 (372)
Q Consensus 244 ~~~~~~~g~v~id~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~ 323 (372)
+. +.. + .+.+..... +.. ..-++|+.+.+.++++... .
T Consensus 128 d~-------vk~-----v---~~t~~r~~l---------------------~~~-~~P~~f~~~~l~~~~~~~~---~-- 165 (371)
T 1w55_A 128 DT-------TLF-----D---NEALQREKI---------------------KLI-QTPQISKTKLLKKALDQNL---E-- 165 (371)
T ss_dssp SC-------EEE-----T---TEEECGGGC---------------------CEE-CSCEEEEHHHHHHHTSSCC---C--
T ss_pred cC-------eee-----e---eeecCccce---------------------eec-CCcceecHHHHHHHHHhcc---c--
Confidence 21 000 0 011111000 000 0124678877766654321 0
Q ss_pred hhhhHHHhhhCCCcEEEEEEcCeEeeCCCHHHHHHHHHhc
Q 017422 324 GSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGI 363 (372)
Q Consensus 324 ~~dvi~~li~~g~~V~a~~~~g~w~DIgT~ed~~~An~~l 363 (372)
..+....+...+.++..++.++.|+||+||+||..|+ .+
T Consensus 166 ~td~~~ll~~~g~~V~~v~~~~~~~dIdTpeDL~~Ae-ll 204 (371)
T 1w55_A 166 FTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLD-LP 204 (371)
T ss_dssp CSSHHHHHHTTTCCEEEEECCGGGCCCCSGGGGGGSC-CC
T ss_pred ccCHHHHHHhCCCcEEEEECCccccCCCCHHHHHHHH-Hh
Confidence 1222222223367898888777899999999999998 44
No 54
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=99.57 E-value=8.1e-14 Score=141.37 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=162.7
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC-CCcchhHHHHHHhhcCCCC-----eEEEEe-cCChhhHHHHHH-Hhhh
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG-ANYRLIDIPVSNCLNSNIS-----KIYVLT-QFNSASLNRHLS-RAYA 159 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg-G~~pLId~~l~~l~~~Gi~-----~I~Vvt-~~~~~~i~~~l~-~~~~ 159 (372)
.++.+||||||.||||+ ...||+|+||+ |+ |+++++++.+...|.. .++|.+ .+..+.+.+|+. +...
T Consensus 74 ~k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~ 149 (505)
T 2oeg_A 74 QSTVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPW 149 (505)
T ss_dssp HTEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHH
T ss_pred hcceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhc
Confidence 37999999999999998 56899999999 86 9999999999887532 455555 466899999998 5333
Q ss_pred cccC---CC-CCCCcEEEeeccc-C---CCC---CCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCc-ccH
Q 017422 160 SNMG---GY-KNEGFVEVLAAQQ-S---PEN---PNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYR-MDY 221 (372)
Q Consensus 160 ~~l~---~~-~~~~~v~il~~~~-~---~~~---~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~-~dl 221 (372)
+++. .. +....+-.+.... . .++ ..| +.|||+.+... ++.+.+.+.+.++|.++|.+.. .|+
T Consensus 150 fGl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~ 229 (505)
T 2oeg_A 150 LYQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK 229 (505)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH
T ss_pred cCCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH
Confidence 3331 00 1111111111100 0 000 011 46999998754 3333333578999999999884 577
Q ss_pred HHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEEC------CCCc---------eEEEEecCChhhhhhhccccccccCC
Q 017422 222 ERFIQAHRETDADITVAALPMDEKRATAFGLMKID------EEGR---------IIEFSEKPKGEQLKAMKVDTTILGLD 286 (372)
Q Consensus 222 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id------~~g~---------V~~f~eKp~~~~~~~~~v~~~~~~~~ 286 (372)
.++.+|.++++++++.+.+... ....+|++..+ .+|+ |.++.+-|.......
T Consensus 230 -~llg~~~~~~ad~~~~v~~k~~-~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~----------- 296 (505)
T 2oeg_A 230 -RVLAYMEKEKIDFLMEVCRRTE-SDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF----------- 296 (505)
T ss_dssp -HHHHHHHHHTCSEEEEEEECCT-TCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH-----------
T ss_pred -HHHHHHHhcCCcEEEEEEEecC-CccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc-----------
Confidence 8999999999999999888654 24578888763 4677 444444443321100
Q ss_pred chhcccCCceEEEEEEEEeHHHHHHHHhhh-----CC--------C-----C-CCh-hhhhHHHhhhCCCcEEEEEEcC-
Q 017422 287 DERAKEMPYIASMGIYVISKDVMLNLLRDK-----FP--------G-----A-NDF-GSEVIPGATSIGMRVQAYLYDG- 345 (372)
Q Consensus 287 ~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~-----~~--------~-----~-~~~-~~dvi~~li~~g~~V~a~~~~g- 345 (372)
.......+.++...+|+-+.+.++++.. .| . . +.+ ++-++..++..-.++.++.++.
T Consensus 297 --~g~~~f~~~Ninn~~~~l~~l~~~~~~~~~~~~Lp~~vn~K~i~~~d~~~~~~~qlE~~~~d~~~~~~~~~~~~V~R~ 374 (505)
T 2oeg_A 297 --QDINKYSFFNTNNLWIRLPVLLETMQEHGGTLPLPVIRNEKTVDSSNSASPKVYQLETAMGAAIAMFESASAIVVPRS 374 (505)
T ss_dssp --HCTTTTCEEEEEEEEEEHHHHHHHHHHTTSSCCCCCEEEEEESSSSCTTSCEEEEEECCGGGGGGSCTTCEEEECCGG
T ss_pred --cCccccCeeEEEEEEEEHHHHHHHHhhhcCccCCcceecccccCCCCCCCCCeEEEeEHHHHHHHhcCcceEEEeccc
Confidence 0011234578999999999988887651 11 0 0 000 1112222222223456666643
Q ss_pred eEeeCCCHHHHHHHHHhccC
Q 017422 346 YWEDIGTIEAFYNANLGITK 365 (372)
Q Consensus 346 ~w~DIgT~ed~~~An~~l~~ 365 (372)
.|.-+-+..|+..++..+..
T Consensus 375 ~FsPvKn~~dl~~~~sdly~ 394 (505)
T 2oeg_A 375 RFAPVKTCADLLALRSDAYV 394 (505)
T ss_dssp GCCCCSSHHHHHHHHSTTEE
T ss_pred eeecccCCCCHHHHHHHHHh
Confidence 58888888998888776554
No 55
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=99.47 E-value=7.1e-13 Score=134.41 Aligned_cols=209 Identities=15% Similarity=0.165 Sum_probs=140.1
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhcC--------C------CCeEEEEecCChhhH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLNS--------N------ISKIYVLTQFNSASL 150 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~~--------G------i~~I~Vvt~~~~~~i 150 (372)
.+|.+||||||.|||| +...||+|+||+ |+ |++++.++.+... | |..+++.+.+..+.+
T Consensus 102 gkvavvlLaGG~GTRL---g~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRL---GSSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGG---TCSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccC---CCCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 4699999999999999 467899999999 86 9999999999876 6 888888888999999
Q ss_pred HHHHHHhhhcccCCCCCCCcEEEeecc----cCCCC----------CC-CCCCcHHHHHHH-----HHHHHhcCCceEEE
Q 017422 151 NRHLSRAYASNMGGYKNEGFVEVLAAQ----QSPEN----------PN-WFQGTADAVRQY-----LWLFEEHNVLEFLV 210 (372)
Q Consensus 151 ~~~l~~~~~~~l~~~~~~~~v~il~~~----~~~~~----------~~-~~~Gta~al~~a-----~~~l~~~~~~~~Lv 210 (372)
.+|+.+...+++.. ..|.++... ...+. -. -+.|+|+.+... ++.+.+.+.+.+.|
T Consensus 178 ~~~~~~~~~fgl~~----~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~yi~v 253 (486)
T 2yqc_A 178 ESFFIENNYFGLNS----HQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHM 253 (486)
T ss_dssp HHHHHHTGGGGSCG----GGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred HHHHhhccccCCCc----ceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeEEEE
Confidence 99998743333321 112211100 00010 01 147999977644 22333347788999
Q ss_pred EcCCccCc--ccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEEC-CCC--ceEEEEecCChhhhhhhccccccccC
Q 017422 211 LAGDHLYR--MDYERFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEG--RIIEFSEKPKGEQLKAMKVDTTILGL 285 (372)
Q Consensus 211 l~gD~l~~--~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id-~~g--~V~~f~eKp~~~~~~~~~v~~~~~~~ 285 (372)
.+.|.+.- .| ..++.+|.++++++++.+.+... .....|++... .+| +|+++.|+|...... .++.
T Consensus 254 ~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~-~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~---~~~~---- 324 (486)
T 2yqc_A 254 YCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRD-ANESVGLIVLDQDNQKPCVIEYSEISQELANK---KDPQ---- 324 (486)
T ss_dssp EETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCS-TTCCCCEEEEETTTTEEEEECGGGSCHHHHHC---EETT----
T ss_pred ECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCC-CCCceeEEEEEecCCCEEEEEEecCCHHHhhc---cccc----
Confidence 99997553 34 45788999999999988877532 24677887643 245 588888887643210 0000
Q ss_pred CchhcccCCceEEEEEEEEeHHHHHHHHhh
Q 017422 286 DDERAKEMPYIASMGIYVISKDVMLNLLRD 315 (372)
Q Consensus 286 ~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~ 315 (372)
.......+..++|+|+|+.+++.+++..
T Consensus 325 --~~~~~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 325 --DSSKLFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp --EEEEESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred --ccccccccceeEEEEEEeHHHHHHHHHh
Confidence 0001124688999999999999874543
No 56
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=99.46 E-value=2.8e-12 Score=126.49 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=141.9
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceec---CCCcchhHHHHHHhhc-------------CCCCeEEEEecCChhhHH
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN-------------SNISKIYVLTQFNSASLN 151 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpI---gG~~pLId~~l~~l~~-------------~Gi~~I~Vvt~~~~~~i~ 151 (372)
.++.+||||||.||||+ ...||+|+|| .|+ |++++.++.+.+ .+|.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRLG---~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRLG---FEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTTT---CCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCccccc---CCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 56999999999999994 4789999999 776 999999988853 578877777778999999
Q ss_pred HHHHHhhhcccCCCCCCCcEEEeecc----cC---------CCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEc
Q 017422 152 RHLSRAYASNMGGYKNEGFVEVLAAQ----QS---------PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLA 212 (372)
Q Consensus 152 ~~l~~~~~~~l~~~~~~~~v~il~~~----~~---------~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~ 212 (372)
+++.+...+++.. .. |.++... .+ +..-.| +.|+|+.+... ++.+.+.+.+.++|.+
T Consensus 110 ~~f~~~~~fGl~~---~~-i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v~n 185 (405)
T 3oc9_A 110 NYFKEHQYFGLSS---EQ-IHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHN 185 (405)
T ss_dssp HHHHHTGGGGSCT---TS-EEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEEEC
T ss_pred HHHHhCcccCCCc---cc-eEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 9998854444321 01 2221100 00 000012 47888876643 2333334678999999
Q ss_pred CCc-cCcccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEE-CCCCceEEEEecCChhhhhhhccccccccCCchhc
Q 017422 213 GDH-LYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKI-DEEGRIIEFSEKPKGEQLKAMKVDTTILGLDDERA 290 (372)
Q Consensus 213 gD~-l~~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i-d~~g~V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~ 290 (372)
+|. |.......++.+|.++++++++-+.+... +....|++.. |...+|+++.|.|.. . .....+.
T Consensus 186 vDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~-~dek~Gvl~~~dg~~~vvEysei~~e-~-e~~~~~g---------- 252 (405)
T 3oc9_A 186 VDNILCKDVDPNMIGYMDLLQSEICIKIVKKGF-KEEKVGVLVKEQERIKVVEYTELTDE-L-NKQLSNG---------- 252 (405)
T ss_dssp TTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCS-TTCSCCEEEEETTEEEEECGGGCCTT-T-TCBCTTS----------
T ss_pred CCCcccccCCHHHHHHHHHcCCCEEEEEEECCC-CCCccceEEEECCeeEEEEEeeCCHH-H-hhcCCCC----------
Confidence 999 87777788999999999999988887543 2367787764 544578888887765 1 1110010
Q ss_pred ccCCceEEEEEEEEeHHHHHHHH
Q 017422 291 KEMPYIASMGIYVISKDVMLNLL 313 (372)
Q Consensus 291 ~~~~~~~~~Giyv~~~~~l~~ll 313 (372)
....+..++++++|+.++|.+++
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT
T ss_pred ceeeccceeEeeecCHHHHHHhh
Confidence 11245788999999999998776
No 57
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=97.84 E-value=0.00018 Score=72.82 Aligned_cols=247 Identities=14% Similarity=0.130 Sum_probs=139.6
Q ss_pred ccCCceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC----CC-CeEEEEec-CChhhHHHHHHHhh
Q 017422 85 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NI-SKIYVLTQ-FNSASLNRHLSRAY 158 (372)
Q Consensus 85 ~~~~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~----Gi-~~I~Vvt~-~~~~~i~~~l~~~~ 158 (372)
....++.+|+||||.||||+ ...||.++||...++++++.++.+... |. --++|.|. .+.+.+.+++.+..
T Consensus 123 ~~l~kvavvlLaGGlGTRLG---~~~PK~~i~V~sgktflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~k~~ 199 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSMG---CKGPKSLIGVRNENTFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQKYN 199 (528)
T ss_dssp TTCTTEEEEEECCCBCTTTT---CSSBGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCGGGT
T ss_pred hhcCceEEEEeCCCCccccC---CCCCccceecCCCCcHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHHhcC
Confidence 34567999999999999995 357999999974459999999988764 42 34566666 55677777776632
Q ss_pred hcccCCCCCCCcEEEeecccC-------------------CCCCCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcC
Q 017422 159 ASNMGGYKNEGFVEVLAAQQS-------------------PENPNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAG 213 (372)
Q Consensus 159 ~~~l~~~~~~~~v~il~~~~~-------------------~~~~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~g 213 (372)
.. +.. +.++....- +....| +-|.|+-.... ++.+.+.+.+.+.+.+.
T Consensus 200 ~f------g~~-V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nv 272 (528)
T 3r3i_A 200 HC------RVK-IYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNI 272 (528)
T ss_dssp TS------SCC-EEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEET
T ss_pred cc------CCC-eEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEcc
Confidence 11 111 222111000 001123 34555422211 23333447889999999
Q ss_pred CccC-cccHHHHHHHHHHc----CCCEEEEEEecCCCCCcceeEEEECCCCc--eEEEEecCChhhhhhhccccccccCC
Q 017422 214 DHLY-RMDYERFIQAHRET----DADITVAALPMDEKRATAFGLMKIDEEGR--IIEFSEKPKGEQLKAMKVDTTILGLD 286 (372)
Q Consensus 214 D~l~-~~dl~~ll~~h~~~----~aditi~~~~~~~~~~~~~g~v~id~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~ 286 (372)
|.+. ..|. .++..+... ++++.+-+.+-.. ....-|++.. .+|+ |+++.+-|......
T Consensus 273 DNlga~vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~-~dek~Gvl~~-~dGk~~vvEyseip~e~~~~------------ 337 (528)
T 3r3i_A 273 DNLGATVDL-YILNHLMNPPNGKRCEFVMEVTNKTR-ADVKGGTLTQ-YEGKLRLVEIAQVPKAHVDE------------ 337 (528)
T ss_dssp TBTTCCCCH-HHHHHHSSCSSSCCCSEEEEECCCCT-TCCSSCEEEC-SSSSCEEECTTSSCGGGTTT------------
T ss_pred CCcccccCH-HHHHHHHhcccccCCcEEEEEeEccc-cCCcccEEEE-ECCeEEEEEecCCChhHhhc------------
Confidence 9965 3443 356666666 7887765554222 2234455533 3554 44444443322110
Q ss_pred chhcccCCceEEEEEEEEeHHHHHHHHhhhC---C----------CCC-----ChhhhhHHHhhhCCCcEEEEEEcC-eE
Q 017422 287 DERAKEMPYIASMGIYVISKDVMLNLLRDKF---P----------GAN-----DFGSEVIPGATSIGMRVQAYLYDG-YW 347 (372)
Q Consensus 287 ~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~---~----------~~~-----~~~~dvi~~li~~g~~V~a~~~~g-~w 347 (372)
........+.++...+|+-+.+.++++... + +.+ .+..++++.. .+..++.++. .|
T Consensus 338 -~~g~~~f~~~Ntnnlw~~L~~L~~v~~~~~l~Lp~ivn~K~vd~~~~viqlEt~igd~i~~f----~~~~~i~VpR~rF 412 (528)
T 3r3i_A 338 -FKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNAKTLDGGLNVIQLETAVGAAIKSF----ENSLGINVPRSRF 412 (528)
T ss_dssp -SSCSSSCCCCEEEEEEEEHHHHHHHHHTTCCCCCCEEEEECCSSSSCEEEEEBCSTTCSTTS----SSCCCEECCGGGC
T ss_pred -cCCcccCCeEEEEEEEEEHHHHHHHHHhCCCCCCceecCcccCCCCCEEEeHHHHHHHHHhc----cCcEEEEEehHHc
Confidence 001112345788999999999988887531 1 001 1122333222 2355566643 48
Q ss_pred eeCCCHHHHHHHHH
Q 017422 348 EDIGTIEAFYNANL 361 (372)
Q Consensus 348 ~DIgT~ed~~~An~ 361 (372)
.-+-+..|++-..-
T Consensus 413 ~PvKn~sdLll~~S 426 (528)
T 3r3i_A 413 LPVKTTSDLLLVMS 426 (528)
T ss_dssp CBCCSHHHHHHHHS
T ss_pred ccccchHHHHHHhc
Confidence 88999999886653
No 58
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=97.82 E-value=0.0014 Score=65.76 Aligned_cols=255 Identities=13% Similarity=0.108 Sum_probs=149.1
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcC----CC-CeEEEEecC-ChhhHHHHHHHhhhcc
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS----NI-SKIYVLTQF-NSASLNRHLSRAYASN 161 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~----Gi-~~I~Vvt~~-~~~~i~~~l~~~~~~~ 161 (372)
.++.+|+||||.||||+ ...||.++||+..+++++..++.+... |+ --++|.|.+ +.+.+.+++.+...++
T Consensus 75 ~kvavvlLaGGlGTRLG---~~~pKg~~~v~sgksflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fg 151 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGMG---LNGPKSLLQVKNGQTFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLRKYPTLY 151 (484)
T ss_dssp TTEEEEEEECCCCGGGT---CSSCGGGSEEETTEEHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGGGCHHHH
T ss_pred hhcEEEEEcCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHHhCcccC
Confidence 47999999999999995 357999999965569999999987652 32 356777775 5577788887642222
Q ss_pred cC----CCCCCCcEEEeecccC-----CCC--CCC-CCCcHHHHHHH-----HHHHHhcCCceEEEEcCCccCcccHHHH
Q 017422 162 MG----GYKNEGFVEVLAAQQS-----PEN--PNW-FQGTADAVRQY-----LWLFEEHNVLEFLVLAGDHLYRMDYERF 224 (372)
Q Consensus 162 l~----~~~~~~~v~il~~~~~-----~~~--~~~-~~Gta~al~~a-----~~~l~~~~~~~~Lvl~gD~l~~~dl~~l 224 (372)
+. ..|.++.+-.+..... +.+ -.| +-|.|+-.... ++.+.+.+.+.+.+.+.|.+...---.+
T Consensus 152 l~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp~~ 231 (484)
T 3gue_A 152 EVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDVRL 231 (484)
T ss_dssp TTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCHHH
T ss_pred CCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCHHH
Confidence 21 1111221211111100 000 123 35666533221 3334344788999999999765322557
Q ss_pred HHHHHHcCCCEEEEEEecCCCCCcceeEEEEC---------CCCc--eEEEEecCChhhhhhhccccccccCCchhcccC
Q 017422 225 IQAHRETDADITVAALPMDEKRATAFGLMKID---------EEGR--IIEFSEKPKGEQLKAMKVDTTILGLDDERAKEM 293 (372)
Q Consensus 225 l~~h~~~~aditi~~~~~~~~~~~~~g~v~id---------~~g~--V~~f~eKp~~~~~~~~~v~~~~~~~~~~~~~~~ 293 (372)
+..+.++++++.+-+.+-... ...-|++... .+|+ |.++.+-|...... . ....+
T Consensus 232 lG~~~~~~~d~~~kvv~Kt~~-dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~-f------------~~~~g 297 (484)
T 3gue_A 232 LDYMHEKQLGFLMEVCRRTES-DKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDS-F------------QNIAK 297 (484)
T ss_dssp HHHHHHTTCSEEEEEEECCTT-CCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHH-H------------TCTTT
T ss_pred HHHHHhcCCCEEEEEEECCCC-CCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhh-h------------cCCCC
Confidence 788888999988776664322 3345644321 2454 45555544432110 0 00112
Q ss_pred CceEEEEEEEEeHHHHHHHHhhh--C---C-------------CC------CChhhhhHHHhhhCCCcEEEEEEcC-eEe
Q 017422 294 PYIASMGIYVISKDVMLNLLRDK--F---P-------------GA------NDFGSEVIPGATSIGMRVQAYLYDG-YWE 348 (372)
Q Consensus 294 ~~~~~~Giyv~~~~~l~~ll~~~--~---~-------------~~------~~~~~dvi~~li~~g~~V~a~~~~g-~w~ 348 (372)
.-..+++-.+++-..+.++++.. . | .. ..|+.|+++.+ .+..++.++. .+.
T Consensus 298 ~~~FNtnNi~~~l~~l~~~l~~~~g~~~Lp~~vn~K~id~~k~~~~~~iqlE~~~~d~~~~~----~~~~~ieV~R~rF~ 373 (484)
T 3gue_A 298 HCFFNTNNIWINLMELKKMMDEQLGVLRLPVMRNPKTVNPQDSQSTKVYQLEVAMGAAISLF----DRSEAVVVPRERFA 373 (484)
T ss_dssp SCEEEEEEEEEEHHHHHHHHHHTTTCCCCCCEEEEEESSTTCTTSCEEEEEECCGGGGGTTS----SSEEEEECCGGGCC
T ss_pred ceEeEeeeEEEEHHHHHHHHHhccCcCCCCcEeccceecCCCCCCCCEeehHHHHHHHHHhC----CccEEEEEChhhcc
Confidence 34668888999988887777653 1 1 00 11223333333 3677777754 589
Q ss_pred eCCCHHHHHHHHHhc
Q 017422 349 DIGTIEAFYNANLGI 363 (372)
Q Consensus 349 DIgT~ed~~~An~~l 363 (372)
-+-+..|+..+.-.+
T Consensus 374 PvKn~sdLl~~~Sdl 388 (484)
T 3gue_A 374 PVKTCSDLLALRSDA 388 (484)
T ss_dssp CCSSHHHHHHHHSTT
T ss_pred ccccchHHHHHhhhc
Confidence 999999988776543
No 59
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=97.32 E-value=0.011 Score=60.86 Aligned_cols=167 Identities=12% Similarity=0.125 Sum_probs=99.8
Q ss_pred CceEEEEEeCCCCCCCCCCccCCCccceecC---CCcchhHHHHHHhhc-CCC-CeEEEEec-CChhhHHHHHHHhhhcc
Q 017422 88 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLG---ANYRLIDIPVSNCLN-SNI-SKIYVLTQ-FNSASLNRHLSRAYASN 161 (372)
Q Consensus 88 ~~m~aIILAaG~GtRL~plT~~~pKpLlpIg---G~~pLId~~l~~l~~-~Gi-~~I~Vvt~-~~~~~i~~~l~~~~~~~ 161 (372)
.++.+|+||||.||||+ ...||.++|++ |+ +++++.++.+.+ +|. --++|.|. .+.+.+.+++.+ |...
T Consensus 113 ~kvavvllaGGlGTRLG---~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~ 187 (630)
T 3ogz_A 113 CKTVFVLVAGGLGERLG---YSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLE 187 (630)
T ss_dssp GGEEEEEECCCEEGGGT---EEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCC
T ss_pred hhceEEEecCCcccccC---CCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCC
Confidence 47999999999999995 35799999996 65 999999999876 343 34566666 566788888887 3211
Q ss_pred cC--CCCCCCcEEEeeccc------CCCCCCC-CCCcHHHHHH-----------------------HHHHHHhcCCceEE
Q 017422 162 MG--GYKNEGFVEVLAAQQ------SPENPNW-FQGTADAVRQ-----------------------YLWLFEEHNVLEFL 209 (372)
Q Consensus 162 l~--~~~~~~~v~il~~~~------~~~~~~~-~~Gta~al~~-----------------------a~~~l~~~~~~~~L 209 (372)
-. ..|..+.+-.+.... ++..-.| +-|.|+-... .++.+.+.+.+.+.
T Consensus 188 ~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~ 267 (630)
T 3ogz_A 188 VPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIV 267 (630)
T ss_dssp CTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEE
T ss_pred cccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEE
Confidence 00 001111111111000 0001112 3566653222 23333344788999
Q ss_pred EEcCCccC-cccHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEE-EE-CCCCce
Q 017422 210 VLAGDHLY-RMDYERFIQAHRETDADITVAALPMDEKRATAFGLM-KI-DEEGRI 261 (372)
Q Consensus 210 vl~gD~l~-~~dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v-~i-d~~g~V 261 (372)
+.+.|.+. ..---.++-.+.++++++.+-+.+-. +...-|.+ .+ ..+|+.
T Consensus 268 v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~--p~E~vG~l~~~~~~dGk~ 320 (630)
T 3ogz_A 268 FIQDTNAGATITIPISLALSAEHSLDMNFTCIPRV--PKEPIGLLCRTKKNSGDP 320 (630)
T ss_dssp EECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCC--SSCSSCEEEEEESSTTSC
T ss_pred EEccCCccccccCHHHhHHHHhcCCCEEEEEEECC--CCcceeeEEEEecCCCce
Confidence 99999954 33334477888889999877766532 23334444 33 345655
No 60
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=96.98 E-value=0.002 Score=57.32 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=69.2
Q ss_pred CceEEEEEe--CCCCCCCCCCccCCCccceecCCCcchhHHHHHHhhcCCCCeE-EEEecCChhhHHHHHHHhhhcccCC
Q 017422 88 RSVLGIILG--GGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKI-YVLTQFNSASLNRHLSRAYASNMGG 164 (372)
Q Consensus 88 ~~m~aIILA--aG~GtRL~plT~~~pKpLlpIgG~~pLId~~l~~l~~~Gi~~I-~Vvt~~~~~~i~~~l~~~~~~~l~~ 164 (372)
+.|.+||++ +..-|||.|. ..+......++ |||+|+++.+..+++++| ++++++... .++ +
T Consensus 2 ~~~~~vip~k~g~~KtRL~~~---l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~--~~~------~---- 65 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSPV---LSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL--EEM------T---- 65 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTTT---SCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC--SSC------C----
T ss_pred CceEEEEEeCCCCCccccCcc---CCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH--Hhh------c----
Confidence 358899999 7778888531 11111113345 999999999999999999 999875431 111 1
Q ss_pred CCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHHHHHhcCCceEEEEcCCccC-cc-cHHHHHH
Q 017422 165 YKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLY-RM-DYERFIQ 226 (372)
Q Consensus 165 ~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~-~~-dl~~ll~ 226 (372)
+ +.++. + + .|.++++.++...+ .+.++++.||+-+ .. .+.++++
T Consensus 66 ----~-~~~v~--~----~---~gl~~sl~~a~~~~----~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 66 ----E-ARVLL--D----E---KDLNEALNRYLKEA----EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp ----S-SEEEE--C----C---SCHHHHHHHHHHHC----CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred ----C-CEEEE--C----C---CCHHHHHHHHHHhc----CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 1 23332 1 1 58889999887554 3689999999943 43 3777765
No 61
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=96.47 E-value=0.023 Score=52.00 Aligned_cols=89 Identities=4% Similarity=-0.079 Sum_probs=58.4
Q ss_pred cchhHHHHHHhhcCCCCeEEEEecCChhhHH--HHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHH
Q 017422 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLN--RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (372)
Q Consensus 121 ~pLId~~l~~l~~~Gi~~I~Vvt~~~~~~i~--~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~ 198 (372)
.+|+.++++.+..++...++++++.....+. ..+.. .+.+ + .. | |..|-+.++.++..
T Consensus 37 ~~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~~~~~~~~-----------~~~~-~-~~-q------~~~gLg~rl~~a~~ 96 (242)
T 3cgx_A 37 RHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLG-----------PQHM-F-AA-Q------QGLDLGERMKHAMQ 96 (242)
T ss_dssp HHHHHHHHHHHTTSSSEEEEEECCCCTTHHHHHHHHHC-----------TTSE-E-EE-C------CSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCchhhhhhhhhhcc-----------CCcE-E-ec-C------CCCCHHHHHHHHHH
Confidence 4899999999999988888888876554432 11110 1112 1 11 2 12688899999886
Q ss_pred HHHhcCCceEEEEcCCcc--CcccHHHHHHHHH
Q 017422 199 LFEEHNVLEFLVLAGDHL--YRMDYERFIQAHR 229 (372)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l--~~~dl~~ll~~h~ 229 (372)
.+-....+.++|+.+|+- ...++.++++.+.
T Consensus 97 ~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 97 KAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 553334578999999993 3455888877543
No 62
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=95.90 E-value=0.0026 Score=61.95 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=60.7
Q ss_pred eEEEEcCCccCcc--cHHHHHHHHHHcCCCEEEEEEecCCCCCcceeEEEECC--CCceEEEEecCChhhhhhhcccccc
Q 017422 207 EFLVLAGDHLYRM--DYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDE--EGRIIEFSEKPKGEQLKAMKVDTTI 282 (372)
Q Consensus 207 ~~Lvl~gD~l~~~--dl~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~--~g~V~~f~eKp~~~~~~~~~v~~~~ 282 (372)
.=|+--|||+|+| +|.++++.|. .++.. .+....||+..+|+ +++| .|.|||+....
T Consensus 12 ~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~--------- 72 (374)
T 2iu8_A 12 SGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH--------- 72 (374)
T ss_dssp ---------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH---------
T ss_pred cCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh---------
Confidence 4567789999998 8999999885 25543 23467889888875 4677 99999985321
Q ss_pred ccCCchhcccCCceEEEEEEEEeHHHHHHHHhhhCCCCCChhhhhHHHhhhCCCcEEEEEEcCeEeeC
Q 017422 283 LGLDDERAKEMPYIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDI 350 (372)
Q Consensus 283 ~~~~~~~~~~~~~~~~~Giyv~~~~~l~~ll~~~~~~~~~~~~dvi~~li~~g~~V~a~~~~g~w~DI 350 (372)
...+++|+|+|+++++..+.. + .++++ ++.. .+..+|....+|+|.
T Consensus 73 -----------~~~~~aGiyI~~~~~l~~~~~--------~-~~~~p-l~~~-~~~~a~~~~~~~~~~ 118 (374)
T 2iu8_A 73 -----------LKSSEAGAIIISRTQFQKYRD--------L-NKNFL-ITSE-SPSLVFQKCLELFIT 118 (374)
T ss_dssp -----------HHTCCCSEEEEEHHHHHTSTT--------S-CSCEE-EESS-CHHHHHHHHHTTTSC
T ss_pred -----------hhcCCcEEEEeChhHhhhccc--------c-ccceE-EEeC-CHHHHHHHHHHHhcc
Confidence 135689999999987742211 1 34555 5442 245455444555553
No 63
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=90.49 E-value=3.2 Score=36.08 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=62.3
Q ss_pred CcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHH
Q 017422 120 NYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (372)
Q Consensus 120 ~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~ 197 (372)
....|..+|+.+.+... -+|+||-....+...+.+.+ +.. .+..+.++. + ++ .|.+.+.-.++
T Consensus 16 ~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~-~~~------~~~~i~~i~--~--~n----~G~~~a~N~g~ 80 (240)
T 3bcv_A 16 VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDD-YAA------QYPNIKVIH--K--KN----AGLGMACNSGL 80 (240)
T ss_dssp CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHH-HHH------HCSSEEEEE--C--CC----CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHH-HHh------hCCCEEEEE--C--CC----CChHHHHHHHH
Confidence 33677788888876533 25666655333333333332 111 011255553 1 23 68888888777
Q ss_pred HHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
... ..+.++++.+|.++..+ +..+++...+.+.++++.
T Consensus 81 ~~a---~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 81 DVA---TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHC---CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred HHc---CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 655 45788999999988877 888888887767776543
No 64
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=82.02 E-value=18 Score=31.44 Aligned_cols=106 Identities=9% Similarity=0.143 Sum_probs=62.4
Q ss_pred eecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCC-----CCCCCCC
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP-----ENPNWFQ 187 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~-----~~~~~~~ 187 (372)
+|.-++...|..+|+.+.+... -+|+|+-....+...+.+.. +.. ...+.++...... .+ .
T Consensus 7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~-~~~-------~~~i~~i~~~~~~~~~~~~n----~ 74 (255)
T 1qg8_A 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRP-FLN-------DNRVRFYQSDISGVKERTEK----T 74 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGG-GGG-------STTEEEEECCCCSHHHHHSS----C
T ss_pred EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHH-Hhh-------cCCEEEEecccccccccccc----c
Confidence 3444444678888888877543 25666665444444444433 211 1125554321000 12 5
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHc-CCCE
Q 017422 188 GTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRET-DADI 235 (372)
Q Consensus 188 Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~-~adi 235 (372)
|.+.+.-.++... ..+.++++.+|.++..+ +..+++.+.+. +.++
T Consensus 75 G~~~a~N~gi~~a---~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~ 121 (255)
T 1qg8_A 75 RYAALINQAIEMA---EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAV 121 (255)
T ss_dssp HHHHHHHHHHHHC---CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCE
T ss_pred CHHHHHHHHHHHc---CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceE
Confidence 7777777666544 45788999999988877 88888887765 4444
No 65
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=70.90 E-value=71 Score=32.08 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=61.7
Q ss_pred eecCCCcchhHHHHHHhhcCCC--CeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHH
Q 017422 115 VPLGANYRLIDIPVSNCLNSNI--SKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 192 (372)
Q Consensus 115 lpIgG~~pLId~~l~~l~~~Gi--~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~a 192 (372)
+|.-+....|..+|+.+.+... -+|+|+-+...+...+.+..... .+..+.++.. ++ .|-+.+
T Consensus 381 i~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~-------~~~~i~~~~~----~n----~G~~~a 445 (625)
T 2z86_A 381 IPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYA-------NHPRVRFISQ----KN----KGIGSA 445 (625)
T ss_dssp EEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHT-------TCTTEEEEEE----CC----CCHHHH
T ss_pred EeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHh-------hCCcEEEEeC----CC----CCHHHH
Confidence 4444444788888988876533 26666665433434444444211 1112555531 23 688888
Q ss_pred HHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcC
Q 017422 193 VRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (372)
Q Consensus 193 l~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (372)
+-.++... ..+.++++.+|.++..+ +..+++...+..
T Consensus 446 ~n~g~~~a---~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~ 483 (625)
T 2z86_A 446 SNTAVRLC---RGFYIGQLDSDDFLEPDAVELCLDEFRKDL 483 (625)
T ss_dssp HHHHHHHC---CSSEEEECCTTCEECTTHHHHHHHHHHHCT
T ss_pred HHHHHHhc---CCCEEEEECCCcccChhHHHHHHHHHHhCC
Confidence 88777654 35788899999988777 888887765543
No 66
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=70.66 E-value=63 Score=31.19 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=59.0
Q ss_pred chhHHHHHHhhcCCC----CeEEEEecCChh-hHHHHHHHhhhcccCCCCCCC-cEEEeecccCCCCCCCCCCcHHHHHH
Q 017422 122 RLIDIPVSNCLNSNI----SKIYVLTQFNSA-SLNRHLSRAYASNMGGYKNEG-FVEVLAAQQSPENPNWFQGTADAVRQ 195 (372)
Q Consensus 122 pLId~~l~~l~~~Gi----~~I~Vvt~~~~~-~i~~~l~~~~~~~l~~~~~~~-~v~il~~~~~~~~~~~~~Gta~al~~ 195 (372)
..|...|+.+.+.-. .+|+||-....+ ...+.+.+... . .. .+.++.. +++ .|-+.|...
T Consensus 43 ~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~-~------~~~~v~vi~~---~~n----~G~~~a~N~ 108 (472)
T 1xhb_A 43 STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK-K------LKVPVHVIRM---EQR----SGLIRARLK 108 (472)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH-S------SSSCEEEEEC---SSC----CCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH-H------CCCcEEEEEC---CCC----CChHHHHHH
Confidence 456667777666432 378777654433 24444433111 0 11 2555542 123 688888877
Q ss_pred HHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCE
Q 017422 196 YLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (372)
Q Consensus 196 a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adi 235 (372)
++... ..+.++++.+|..+..+ +..+++...+....+
T Consensus 109 g~~~A---~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 109 GAAVS---RGQVITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp HHHHC---CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred HHHhc---cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 76554 45788899999988877 899998877665443
No 67
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=64.93 E-value=43 Score=34.58 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=64.6
Q ss_pred ecCCCcchhHHHHHHhhcC-----CCCeEEEEecCChh-----hHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCC
Q 017422 116 PLGANYRLIDIPVSNCLNS-----NISKIYVLTQFNSA-----SLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNW 185 (372)
Q Consensus 116 pIgG~~pLId~~l~~l~~~-----Gi~~I~Vvt~~~~~-----~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~ 185 (372)
|.-++...|..+|+.+.+. .+.+|+||=+-..+ .+.+.+..... .+.++.. ++
T Consensus 187 ptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~----------~I~vI~~----~N--- 249 (657)
T 4fix_A 187 PTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGS----------RLSIHDQ----PN--- 249 (657)
T ss_dssp CBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG----------GEEEEEC----CC---
T ss_pred EecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCC----------CEEEEEC----CC---
Confidence 3334446888888888764 33477777653321 33444433211 1555531 13
Q ss_pred CCCcHHHHHHHHHHHHhc-CCceEEEEcCCccCccc-HHHHHHHHHHcCCCEEEE
Q 017422 186 FQGTADAVRQYLWLFEEH-NVLEFLVLAGDHLYRMD-YERFIQAHRETDADITVA 238 (372)
Q Consensus 186 ~~Gta~al~~a~~~l~~~-~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~aditi~ 238 (372)
.|-+.+.-.++...... ..+.+++++.|.+...+ +..+++..........+.
T Consensus 250 -~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg 303 (657)
T 4fix_A 250 -LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVG 303 (657)
T ss_dssp -CHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEE
Confidence 68888877777655432 35788999999988877 888988887765543433
No 68
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=58.88 E-value=55 Score=30.11 Aligned_cols=102 Identities=10% Similarity=0.019 Sum_probs=57.7
Q ss_pred chhHHHHHHhhcC--C-CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecc-cCCCCCCCCCCcHHHHHHHH
Q 017422 122 RLIDIPVSNCLNS--N-ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ-QSPENPNWFQGTADAVRQYL 197 (372)
Q Consensus 122 pLId~~l~~l~~~--G-i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~-~~~~~~~~~~Gta~al~~a~ 197 (372)
..|..+|+.+.+. . ..+|+||-....+...+.+.. +.. .....+... ....+ .|-+.++..++
T Consensus 61 ~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~-~~~--------~~~~~~~~~~~~~~n----~G~~~a~n~g~ 127 (329)
T 3ckj_A 61 DTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVA-AGA--------RVVSREQALPEVPIR----PGKGEALWRSL 127 (329)
T ss_dssp TTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHH-TTC--------EEEEHHHHCTTSCCC----CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHH-hhh--------hhccceeeeccCCCC----CCHHHHHHHHH
Confidence 4556666666653 2 357888775444444444443 111 001110000 01122 68888888877
Q ss_pred HHHHhcCCceEEEEcCCcc-Cccc-HHHHHHHHHHc-CCCEEEEE
Q 017422 198 WLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHRET-DADITVAA 239 (372)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~~~-~aditi~~ 239 (372)
... ..+.++++.+|.+ +..+ +..+++...+. +.+++...
T Consensus 128 ~~a---~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~ 169 (329)
T 3ckj_A 128 AAS---RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSF 169 (329)
T ss_dssp HHC---CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEE
T ss_pred HhC---CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEE
Confidence 654 3578889999998 7766 88888875543 55655443
No 69
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=57.94 E-value=73 Score=31.98 Aligned_cols=98 Identities=8% Similarity=-0.006 Sum_probs=59.4
Q ss_pred chhHHHHHHhhcCC---CCeEEEEecCChhhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHHH
Q 017422 122 RLIDIPVSNCLNSN---ISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLW 198 (372)
Q Consensus 122 pLId~~l~~l~~~G---i~~I~Vvt~~~~~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~~ 198 (372)
..|..+|+.+.+.. --+|+||-....+...+.+.. +.. ...+.++... .. -.|-+.++-.++.
T Consensus 106 ~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~-~~~-------~~~i~~i~~~---~~---~~g~~~a~N~g~~ 171 (625)
T 2z86_A 106 KILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVRE-FES-------LLNIKYVRQK---DY---GYQLCAVRNLGLR 171 (625)
T ss_dssp HHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHT-TTT-------TSCEEEEEEC---CC---SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHH-hhh-------cCCeEEEEeC---CC---CcchhHHHHHHHH
Confidence 57777888887652 356777776544544444443 211 1114444321 11 1357777777765
Q ss_pred HHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCEE
Q 017422 199 LFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADIT 236 (372)
Q Consensus 199 ~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adit 236 (372)
.. ..+.++++.+|.+...+ +..+++.+.+.+...+
T Consensus 172 ~a---~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~ 207 (625)
T 2z86_A 172 AA---KYNYVAILDCDMAPNPLWVQSYMELLAVDDNVAL 207 (625)
T ss_dssp HC---CSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEE
T ss_pred hC---CcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEE
Confidence 54 45788999999988877 7888887776555433
No 70
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=57.53 E-value=48 Score=32.46 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=55.3
Q ss_pred hhHHHHHHhhcCCC-C---eEEEEecCCh-hhHHHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCcHHHHHHHH
Q 017422 123 LIDIPVSNCLNSNI-S---KIYVLTQFNS-ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYL 197 (372)
Q Consensus 123 LId~~l~~l~~~Gi-~---~I~Vvt~~~~-~~i~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gta~al~~a~ 197 (372)
.|...|+.+.+.-. . +|+||-.... ..+...+.. ...+.++... ++ .|-+.|...++
T Consensus 81 ~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~~~-----------~~~v~vi~~~---~n----~G~~~A~N~G~ 142 (501)
T 2ffu_A 81 ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGK-----------IEKVRVLRND---RR----EGLMRSRVRGA 142 (501)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGGGG-----------BTTEEEEECS---SC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHHhc-----------CCCEEEEECC---CC----cCHHHHHHHHH
Confidence 56666666655322 2 7777765333 233222211 1125555421 22 67778887776
Q ss_pred HHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcCCCE
Q 017422 198 WLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETDADI 235 (372)
Q Consensus 198 ~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~adi 235 (372)
... ..+.++++.+|..+..+ +..+++...+...++
T Consensus 143 ~~A---~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~v 178 (501)
T 2ffu_A 143 DAA---QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRV 178 (501)
T ss_dssp HHC---CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEE
T ss_pred Hhc---CCCEEEEECCCcccCccHHHHHHHHHHhCCCeE
Confidence 554 35778888999988766 899998887765543
No 71
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=55.66 E-value=87 Score=31.37 Aligned_cols=100 Identities=12% Similarity=0.069 Sum_probs=59.5
Q ss_pred ecCCCc-chhHHHHHHhhcCCC-C---eEEEEecCChhhH-HHHHHHhhhcccCCCCCCCcEEEeecccCCCCCCCCCCc
Q 017422 116 PLGANY-RLIDIPVSNCLNSNI-S---KIYVLTQFNSASL-NRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGT 189 (372)
Q Consensus 116 pIgG~~-pLId~~l~~l~~~Gi-~---~I~Vvt~~~~~~i-~~~l~~~~~~~l~~~~~~~~v~il~~~~~~~~~~~~~Gt 189 (372)
|.-+.. ..|..+|+.+.+.-. . +|+||-....+.. .+.+..... ....|.++... ++ .|-
T Consensus 119 p~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~-------~~~~v~vi~~~---~n----~G~ 184 (570)
T 2d7i_A 119 PFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA-------LFPSVRILRTK---KR----EGL 184 (570)
T ss_dssp EESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT-------TSTTEEEEECS---SC----CCH
T ss_pred EECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH-------hCCeEEEEECC---CC----CCH
Confidence 344442 467777777765322 2 7777765433322 444443211 01125565421 22 688
Q ss_pred HHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHHcC
Q 017422 190 ADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRETD 232 (372)
Q Consensus 190 a~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~~~ 232 (372)
+.|...++... ..+.++++.+|..+..+ +..+++...+..
T Consensus 185 ~~A~N~G~~~A---~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~ 225 (570)
T 2d7i_A 185 IRTRMLGASVA---TGDVITFLDSHCEANVNWLPPLLDRIARNR 225 (570)
T ss_dssp HHHHHHHHHHC---CSSEEEECCSSEEECTTCSHHHHHHHHHCT
T ss_pred HHHHHHHHHhc---CCCEEEEEcCCccccccHHHHHHHHHHhCC
Confidence 88888777654 35778889999988776 888888876644
No 72
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=51.90 E-value=67 Score=30.73 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCcc-Cccc-HHHHHHHHHHc-CCCEEEEEEe
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHL-YRMD-YERFIQAHRET-DADITVAALP 241 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l-~~~d-l~~ll~~h~~~-~aditi~~~~ 241 (372)
.|-+.|+..++... ..+.++++.+|.. +..+ +..+++...+. +.++++....
T Consensus 165 ~G~g~A~n~G~~~A---~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~ 219 (387)
T 3f1y_A 165 HGKGDAMWRALSVT---RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYR 219 (387)
T ss_dssp CSHHHHHHHHTTTC---CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEE
T ss_pred CCHHHHHHHHHHhc---CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeec
Confidence 68889988776543 4577888899998 7766 88888887665 6777766543
No 73
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=28.77 E-value=2.8e+02 Score=23.94 Aligned_cols=41 Identities=12% Similarity=-0.066 Sum_probs=28.3
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEcCCccCccc-HHHHHHHHHH
Q 017422 187 QGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMD-YERFIQAHRE 230 (372)
Q Consensus 187 ~Gta~al~~a~~~l~~~~~~~~Lvl~gD~l~~~d-l~~ll~~h~~ 230 (372)
.|.+.|.-.++... ..+.+++++.|.++..+ +.++++...+
T Consensus 60 ~g~a~a~N~Gi~~A---~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 60 FHGFSWHKQMLPRC---KGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp CCTTTHHHHHGGGC---CSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhc---CCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 45555555444322 45789999999988777 8888876654
No 74
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=28.59 E-value=61 Score=28.96 Aligned_cols=24 Identities=4% Similarity=0.003 Sum_probs=20.6
Q ss_pred chhHHHHHHhhcCCCCeEEEEecC
Q 017422 122 RLIDIPVSNCLNSNISKIYVLTQF 145 (372)
Q Consensus 122 pLId~~l~~l~~~Gi~~I~Vvt~~ 145 (372)
|-|.-.|+.|.+.|+++|+|+--|
T Consensus 65 P~i~~al~~l~~~G~~~ivV~Pl~ 88 (269)
T 2xvy_A 65 PSPAEALAGMAEEGFTHVAVQSLH 88 (269)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCHHHHHHHHHHCCCCEEEEEece
Confidence 888999999999999998887664
No 75
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=23.08 E-value=46 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=17.5
Q ss_pred CCcEEEEEEcCeEeeCCCHHHHHHHHH
Q 017422 335 GMRVQAYLYDGYWEDIGTIEAFYNANL 361 (372)
Q Consensus 335 g~~V~a~~~~g~w~DIgT~ed~~~An~ 361 (372)
+..+...+..+-+.|||||+||.++..
T Consensus 157 ~~~~~~~~~~~~~~DVDTpeDl~~~~~ 183 (211)
T 2i5e_A 157 GQDFEIYDSFMAGTDIDEPEDLVELLI 183 (211)
T ss_dssp TCCEEECCCTTTTCCCCSHHHHHHHHH
T ss_pred CCcEEEecccccccCCCCHHHHHHHHH
Confidence 334433322344699999999987754
Done!