Query 017423
Match_columns 372
No_of_seqs 167 out of 1798
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 14:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 1.9E-08 6.6E-13 80.2 6.7 68 264-331 36-105 (137)
2 3b5d_A Multidrug transporter E 98.2 6.1E-06 2.1E-10 63.3 9.3 68 264-331 36-105 (110)
3 3b5d_A Multidrug transporter E 98.0 2.9E-05 9.8E-10 59.5 9.1 67 110-177 38-105 (110)
4 2i68_A Protein EMRE; transmemb 97.9 3.5E-05 1.2E-09 61.2 7.3 65 110-175 38-103 (137)
5 3rko_J NADH-quinone oxidoreduc 41.6 1.4E+02 0.0048 24.2 8.7 24 299-322 128-151 (184)
6 2l2t_A Receptor tyrosine-prote 38.3 24 0.00082 21.4 2.5 15 317-331 23-37 (44)
7 2ks1_B Epidermal growth factor 38.3 24 0.00081 21.5 2.5 14 318-331 25-38 (44)
8 3l1l_A Arginine/agmatine antip 37.6 38 0.0013 31.3 5.3 22 312-333 409-430 (445)
9 4djk_A Probable glutamate/gamm 26.3 2.2E+02 0.0074 26.6 8.6 14 315-328 450-463 (511)
10 3aqp_A Probable secdf protein- 13.2 9.6E+02 0.033 23.9 10.1 38 285-322 299-336 (741)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.72 E-value=1.9e-08 Score=80.20 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHHH-HHHHhcccchhHHHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhhhcccc
Q 017423 264 CIFGLAISFF-GFSCRRAISATGFTVL-GIVNKLLTVVINLVIWDKHSTWVGTVGLLICMLGGVMYQQST 331 (372)
Q Consensus 264 ~~~~~~~~~~-~~~~i~~~~a~~~s~~-~~l~~v~~~~ls~~~~~e~~t~~~~~G~~lil~g~~l~~~~~ 331 (372)
+++++.+.+. +.+++++.++.+...+ ..+.|++++++|+++|+|++|+.+++|+++|++|+++.+..+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4445555554 6678999999988887 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.24 E-value=6.1e-06 Score=63.29 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=57.1
Q ss_pred HHHHHHHHHH-HHHHhcccchhHHHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhhhcccc
Q 017423 264 CIFGLAISFF-GFSCRRAISATGFTVL-GIVNKLLTVVINLVIWDKHSTWVGTVGLLICMLGGVMYQQST 331 (372)
Q Consensus 264 ~~~~~~~~~~-~~~~i~~~~a~~~s~~-~~l~~v~~~~ls~~~~~e~~t~~~~~G~~lil~g~~l~~~~~ 331 (372)
+++++...+. ..+++|+.+..+...+ ..+.|+.++++|+++|||++|+.+++|+++++.|+++.+..+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444 5568999999999777 799999999999999999999999999999999999887644
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.02 E-value=2.9e-05 Score=59.49 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHH-HHHHHHHHHHHHHHHcCCCCCCHhHHHHHHHHhhhhhheeecc
Q 017423 110 IIFYLSLFTNSELLLHANVDTFIVF-RSAVPIFVAIGETLFLHQPWPSIKTWLSLATIFGGSVIYVLTD 177 (372)
Q Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~v~~~~~l~l~~~~~~~~~~~~~~~~~~Gv~l~~~~~ 177 (372)
+.+....++...++++.|.+.+..+ .++.|+++++++++++||+ .++.++.++.+++.|+.+....+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 3445567778889999999999887 8999999999999999999 99999999999999999876543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.86 E-value=3.5e-05 Score=61.22 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHH-HHHHHHHHHHHHHHHcCCCCCCHhHHHHHHHHhhhhhheee
Q 017423 110 IIFYLSLFTNSELLLHANVDTFIVF-RSAVPIFVAIGETLFLHQPWPSIKTWLSLATIFGGSVIYVL 175 (372)
Q Consensus 110 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~v~~~~~l~l~~~~~~~~~~~~~~~~~~Gv~l~~~ 175 (372)
+.+....++.+.++++++++.+..+ .++.|++++++++++++|+ .++.++++++++++|+.++..
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhc
Confidence 3455567788999999999988887 9999999999999999999 999999999999999998754
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=41.56 E-value=1.4e+02 Score=24.22 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=18.7
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHH
Q 017423 299 VINLVIWDKHSTWVGTVGLLICML 322 (372)
Q Consensus 299 ~ls~~~~~e~~t~~~~~G~~lil~ 322 (372)
-+|..+|++-+=+-+..|.++..+
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899888888888877543
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=38.34 E-value=24 Score=21.42 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=7.1
Q ss_pred HHHHHHhhhhhcccc
Q 017423 317 LLICMLGGVMYQQST 331 (372)
Q Consensus 317 ~~lil~g~~l~~~~~ 331 (372)
.+++.++.++|.+++
T Consensus 23 v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhh
Confidence 334444445555544
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.25 E-value=24 Score=21.46 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=6.2
Q ss_pred HHHHHhhhhhcccc
Q 017423 318 LICMLGGVMYQQST 331 (372)
Q Consensus 318 ~lil~g~~l~~~~~ 331 (372)
+++.++.++|.+++
T Consensus 25 ~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 25 LVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhh
Confidence 33444444455444
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=37.62 E-value=38 Score=31.30 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHhhhhhcccccC
Q 017423 312 VGTVGLLICMLGGVMYQQSTSN 333 (372)
Q Consensus 312 ~~~~G~~lil~g~~l~~~~~~~ 333 (372)
..+.|..+++.|..+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4456788888888887765534
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=26.27 E-value=2.2e+02 Score=26.62 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=5.8
Q ss_pred HHHHHHHHhhhhhc
Q 017423 315 VGLLICMLGGVMYQ 328 (372)
Q Consensus 315 ~G~~lil~g~~l~~ 328 (372)
.+..+++.++.++.
T Consensus 450 ~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 450 VVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=13.24 E-value=9.6e+02 Score=23.88 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 017423 285 GFTVLGIVNKLLTVVINLVIWDKHSTWVGTVGLLICML 322 (372)
Q Consensus 285 ~~s~~~~l~~v~~~~ls~~~~~e~~t~~~~~G~~lil~ 322 (372)
....+...-.++.++....++|.++|.....|.++.++
T Consensus 299 li~~~~l~~~i~~~~~~l~l~g~~l~l~~i~glil~iG 336 (741)
T 3aqp_A 299 LVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLG 336 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 33344444444555555667899999999998877654
Done!