Query 017423
Match_columns 372
No_of_seqs 167 out of 1798
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 14:11:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017423.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017423hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 53.3 59 0.0043 27.0 13.6 27 183-210 61-87 (447)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 16.4 1.8E+02 0.013 21.6 7.0 49 278-326 60-108 (199)
3 d1iwga8 f.35.1.1 (A:513-566,A: 15.5 2.2E+02 0.016 21.4 8.4 45 279-323 79-123 (222)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 14.9 54 0.0039 15.7 1.9 18 183-200 3-20 (27)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 13.8 3.3E+02 0.024 22.6 18.7 21 262-282 359-379 (383)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 8.3 4.3E+02 0.031 20.3 7.7 53 104-161 4-56 (248)
7 d1pv7a_ f.38.1.2 (A:) Lactose 7.0 4.9E+02 0.035 19.9 11.6 8 56-63 29-36 (417)
8 d1v54l_ f.23.6.1 (L:) Mitochon 2.9 4.7E+02 0.034 14.2 3.5 15 39-53 19-33 (46)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 2.7 92 0.0067 20.2 -1.2 9 321-329 32-40 (91)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 2.6 3.9E+02 0.028 12.7 3.9 6 148-153 21-26 (30)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=53.34 E-value=59 Score=27.04 Aligned_cols=27 Identities=4% Similarity=0.030 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017423 183 MAYSWALAYLVSMTIDFVYIKHVVMTIG 210 (372)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~ 210 (372)
.|.+..+ ..+.+++..+...++.++++
T Consensus 61 ~g~~~s~-~~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 61 LGFALSG-ISIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 4555443 33555556666666666643
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.45 E-value=1.8e+02 Score=21.56 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=36.6
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHhhhh
Q 017423 278 RRAISATGFTVLGIVNKLLTVVINLVIWDKHSTWVGTVGLLICMLGGVM 326 (372)
Q Consensus 278 i~~~~a~~~s~~~~l~~v~~~~ls~~~~~e~~t~~~~~G~~lil~g~~l 326 (372)
.+..-+.........-.+..+.....+++.+++.....+..++++...-
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd 108 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVD 108 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcc
Confidence 4656666666666666677777778889999999999888877766553
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.54 E-value=2.2e+02 Score=21.44 Aligned_cols=45 Identities=13% Similarity=-0.004 Sum_probs=29.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHh
Q 017423 279 RAISATGFTVLGIVNKLLTVVINLVIWDKHSTWVGTVGLLICMLG 323 (372)
Q Consensus 279 ~~~~a~~~s~~~~l~~v~~~~ls~~~~~e~~t~~~~~G~~lil~g 323 (372)
+.......-+....--+.+++.+..+.+.+++....+|.++.++.
T Consensus 79 rS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 79 ESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp CSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 433333333333333455667788889999999999988775544
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.85 E-value=54 Score=15.68 Aligned_cols=18 Identities=6% Similarity=-0.199 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017423 183 MAYSWALAYLVSMTIDFV 200 (372)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i 200 (372)
.|.+.+-++.++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777777788887643
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.76 E-value=3.3e+02 Score=22.57 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 017423 262 LSCIFGLAISFFGFSCRRAIS 282 (372)
Q Consensus 262 ~~~~~~~~~~~~~~~~i~~~~ 282 (372)
.....+.+..+..++.++++.
T Consensus 359 v~~~~~~~~~~ii~~il~~~~ 379 (383)
T d1u7ga_ 359 ITIVWSGVVAFIGYKLADLTV 379 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 333444444444455555543
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=8.27 E-value=4.3e+02 Score=20.34 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHcCCCCCCHhHHH
Q 017423 104 RFLPAAIIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLHQPWPSIKTWL 161 (372)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~v~~~~~l~l~~~~~~~~~~~ 161 (372)
+++.++++..+..+....++..-+..++. ..-+.+.++.+.++.+| .-+.+++
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r-~~p~kyi 56 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRK-AYAWRYV 56 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSC-CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccC-ccceehh
Confidence 45666666666655555544443333333 34455566777788887 4444544
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.03 E-value=4.9e+02 Score=19.92 Aligned_cols=8 Identities=13% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHHHc
Q 017423 56 IINKWAIM 63 (372)
Q Consensus 56 ~~~K~~l~ 63 (372)
+...++.+
T Consensus 29 ~l~~~l~~ 36 (417)
T d1pv7a_ 29 FFPIWLHD 36 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 8
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.90 E-value=4.7e+02 Score=14.24 Aligned_cols=15 Identities=7% Similarity=-0.049 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q 017423 39 SVYGVAAGYCISASL 53 (372)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (372)
+...+.++|+++...
T Consensus 19 rLla~m~~~fGsgfa 33 (46)
T d1v54l_ 19 RLLAMMTLFFGSGFA 33 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc
Confidence 544556677776643
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.65 E-value=92 Score=20.18 Aligned_cols=9 Identities=0% Similarity=-0.400 Sum_probs=3.8
Q ss_pred HHhhhhhcc
Q 017423 321 MLGGVMYQQ 329 (372)
Q Consensus 321 l~g~~l~~~ 329 (372)
+.|.+.|..
T Consensus 32 V~~~~~~~~ 40 (91)
T d1fftb2 32 AILMAVGFA 40 (91)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHhhh
Confidence 334444443
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.64 E-value=3.9e+02 Score=12.70 Aligned_cols=6 Identities=33% Similarity=1.204 Sum_probs=3.7
Q ss_pred HHcCCC
Q 017423 148 LFLHQP 153 (372)
Q Consensus 148 l~l~~~ 153 (372)
++++|.
T Consensus 21 iffrep 26 (30)
T d2axtt1 21 IFFREP 26 (30)
T ss_dssp HHTSCC
T ss_pred HHhcCC
Confidence 556665
Done!