BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017424
(372 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 42 LFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 101
LF + R A++ AE Q S+ + ++ DR+GL D+ + L +
Sbjct: 707 LFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGA 766
Query: 102 KISTTPDGKVMDLFFVTDTR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVG 154
++ T+ G+ +D+F+V D E +R D E G+A+ VE G
Sbjct: 767 RVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRG 821
Query: 155 TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD 214
+E T + A + PS VTIDN S T+V+ +D
Sbjct: 822 SEQTRAA-AFAIAPS-------------------------VTIDNDASNDATVVEASGRD 855
Query: 215 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 265
GLL+ + +TL D + + G +D F +Q +G K+ D K
Sbjct: 856 RPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 41/232 (17%)
Query: 42 LFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKV 101
LF + R A++ AE Q S+ + ++ DR+GL D+ + L +
Sbjct: 707 LFHHAELARRAAIQGGAAAEGQVRPGSNAAEVVIAAKDRRGLFADLALAISSLGGNVVGA 766
Query: 102 KISTTPDGKVMDLFFVTDTR------ELLHTRKRKEDTYEHLKTILGNAMISCDVE-MVG 154
++ T+ G+ +D+F+V D E +R D E G+A+ VE G
Sbjct: 767 RVFTSRQGQALDVFYVQDVTGAPFGCENPRALRRLADALEAAGK--GDALA---VEPRRG 821
Query: 155 TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD 214
+E T + A + PS VTIDN S T+V+ +D
Sbjct: 822 SEQTRAA-AFAIAPS-------------------------VTIDNDASNDATVVEASGRD 855
Query: 215 HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSK 265
GLL+ + +TL D + + G +D F +Q +G K+ D K
Sbjct: 856 RPGLLHALAKTLADSALSIQSAHID--GYGERAVDAFYVQTTEGGKVTDTRK 905
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 29/196 (14%)
Query: 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 132
L + C D GL + L +I +I T DG +D F+V D +
Sbjct: 758 LTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLG 817
Query: 133 TYEHL--KTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC 190
HL + + G I +E T+ + +P ++
Sbjct: 818 RLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVV------------------ 859
Query: 191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL 250
IDN+ S HT++++ +D GLL+D+ L ++Q+S + G +D+
Sbjct: 860 ------IDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHIT--TYGMRAVDV 911
Query: 251 F-IMQADGKKIVDPSK 265
F + G KI DP +
Sbjct: 912 FYVRDLLGMKITDPVR 927
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDP 263
G T + ++C DH GL I L + R G ++ +G +P
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEP 813
Query: 264 SK--------QNGLSSRL----------------WMELLQ-PLRVTVVSRGPDTELLVAN 298
+ + LS RL M + P RV + + D ++
Sbjct: 814 HQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHTVI-- 871
Query: 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEI 330
E++G+ RP + HD+T AL + I SA I
Sbjct: 872 --EVNGRDRPGLLHDVTSALSSASLQISSAHI 901
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
+++++ DR GLL+DVT+ L L I I TT + +D+F+V D
Sbjct: 870 VIEVNGRDRPGLLHDVTSALSSASLQISSAHI-TTYGMRAVDVFYVRD 916
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 254
V IDN+ S HT++++ +D GLLYD+ R L + +Q+S + S G ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904
Query: 255 -ADGKKIVDPSKQNGLSSRLWMELLQP 280
G K+ +K + RL L P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
+++++ DR GLLYD+T L L L I KIST + K +D+F+V D
Sbjct: 859 VIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGE-KAIDVFYVKD 905
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 46/198 (23%)
Query: 79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
D GL + + + I KI+T DG +D+F V +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTV--------------------Q 774
Query: 139 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVE---------LPSGSLT 189
T+ G+A+ + + L + D+L D+P+E LP +
Sbjct: 775 TLEGHAI-------------EKEERIARLAKTVRDVLTGDLPLEKALRRQPPRLPERTRH 821
Query: 190 CS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI 248
+ V +DN S HT+++I +D G LY + R L D +Q+S R S G +
Sbjct: 822 LTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVS--TYGERVV 879
Query: 249 DLFIMQ-ADGKKIVDPSK 265
D F ++ G KIV +K
Sbjct: 880 DSFYVKDVFGMKIVHRAK 897
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 63 QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
QA K V ++++ DR G LY VT L ++ + I ++ST + +V+D F+V D
Sbjct: 833 QASKTHTV--IEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGE-RVVDSFYVKD 886
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+VTD
Sbjct: 839 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVTD 885
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 194 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 252
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 826 SVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 883
Query: 253 MQADGKKIVDPSKQNGLSSRL 273
G+KI SK+ +++R+
Sbjct: 884 TDLVGQKISGDSKRANITARM 904
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ C DR GLL D+TAV+ +L L I +I+T + KV+D F+VTD
Sbjct: 841 VIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGE-KVIDTFYVTD 887
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 194 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-I 252
SVTI N LS T++++ C D GLL D+ + D ++ + R + G ID F +
Sbjct: 828 SVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARIT--TFGEKVIDTFYV 885
Query: 253 MQADGKKIVDPSKQNGLSSRL 273
G+K+ + ++Q ++ RL
Sbjct: 886 TDLFGQKVTNDNRQASIAQRL 906
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 31/192 (16%)
Query: 79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
DR L D+ + + ++ T+ G+ +D+F+V D
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDAS----------------- 783
Query: 139 TILGNAMISCDVEMVG--TEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVT 196
G S D + E AC A+ P A P +L + +V
Sbjct: 784 ---GQPFGSHDPRALARLAETLAC--AARGEPVA----REPRKPQDLGRTAAFAITPAVM 834
Query: 197 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQA 255
+DN S T+V+ +D GLL + RT+ D + + G +D F ++ A
Sbjct: 835 LDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHID--GYGERAVDAFYVVDA 892
Query: 256 DGKKIVDPSKQN 267
DG+K+ D K+N
Sbjct: 893 DGRKLTDARKRN 904
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 253
VTI NSLS T+++I C D GLL ++ L D ++ + R + G ID F ++
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVI 885
Query: 254 QADGKKIVDPSKQNGLSSRL 273
G+KI + ++Q +S RL
Sbjct: 886 DLVGQKITNENRQGSISVRL 905
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ C DR GLL +VTAVL +L L I +I+T + KV+D F+V D
Sbjct: 840 VIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGE-KVIDTFYVID 886
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 34/197 (17%)
Query: 79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLK 138
D+ L V A L + +I T+ DG V+D F V D
Sbjct: 700 DQPALFATVVAELDRRNFNVHDAQIMTSKDGHVIDTFMVLDQH----------------- 742
Query: 139 TILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTID 198
G A+ V +T +A P+ I L NV +D
Sbjct: 743 ---GEAIDESRHAAVIKHLTHVLEAGR--PTKI--------KTRRTPNKLQHFNVKTKVD 789
Query: 199 NSLSPG--HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD 256
+ G HTL++ V D GLL + RT D NI + + + G DLFI+ ++
Sbjct: 790 FLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKIT--TIGERAEDLFILTSE 847
Query: 257 GKKIVDPSKQNGLSSRL 273
+ +QN L +L
Sbjct: 848 AGGRLSEEQQNELRDKL 864
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ C DR GLL ++TAVL +L L I+ +I+T + KV+D F+V D
Sbjct: 840 VIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGE-KVIDTFYVAD 886
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 194 SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 253
SV I NSLS T++++ C D GLL +I L D ++ + R + G ID F +
Sbjct: 827 SVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARIT--TFGEKVIDTFYV 884
Query: 254 QAD--GKKIVDPSKQNGLSSRL 273
AD G+KI + +++ +++RL
Sbjct: 885 -ADLVGQKISNENRRAYITARL 905
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHTRKRK 130
++L D+ GLL DV+ V EL L+I+ KI+T + K D F +T+ + E L R+R+
Sbjct: 807 MELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGE-KAQDFFILTNAKGEALSERERQ 864
>sp|Q470D5|GLND_CUPPJ [Protein-PII] uridylyltransferase OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=glnD PE=3 SV=1
Length = 869
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R +++ + +LL LS DR GLLY +T VL + +++ +I+T + +V D+F V
Sbjct: 787 RVDLRPDERGQYYLLSLSANDRTGLLYAITRVLAKHRVSVHTARINTLGE-RVEDVFLVD 845
Query: 119 DTR 121
+R
Sbjct: 846 GSR 848
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 50 RGASVV-LYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 108
RGA V + RAE++ + ++++ DR GLL ++T L +L L I I+T +
Sbjct: 825 RGAKVFKIPPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGE 884
Query: 109 GKVMDLFFVTD 119
KV+D F+VTD
Sbjct: 885 -KVIDTFYVTD 894
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTD 891
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 253
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 254 QADGKKIVDPSKQNGLSSRL 273
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 39.7 bits (91), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119
++++ DR GLL +VTAVL +L L I I+T + KV+D F+VTD
Sbjct: 845 VIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTD 891
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 253
VTI N+LS T++++ D GLL ++ L D ++ ++ + G ID F +
Sbjct: 833 VTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHIT--TFGEKVIDTFYVT 890
Query: 254 QADGKKIVDPSKQNGLSSRL 273
G KI ++Q +++RL
Sbjct: 891 DLVGSKITSENRQMNIAARL 910
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 31/202 (15%)
Query: 76 SCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKED 132
+C+ D G+ + L + + + TT DG V D F++ D + R
Sbjct: 720 ACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDAEGHPYEAARLPR 779
Query: 133 TYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSN 192
+ + L +++ D +I +A ++P
Sbjct: 780 LSQMILKTLKGEVVARDALKSRDKIKKREKA-------------FNVPTH---------- 816
Query: 193 VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI 252
+T DN S +T++++ +D GLLYD+ R L N+ ++ + G +D F
Sbjct: 817 --ITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIA--TYGEQVVDSFY 872
Query: 253 MQ-ADGKKIVDPSKQNGLSSRL 273
++ G K +KQ L ++L
Sbjct: 873 VKDMFGLKYHSEAKQRTLETKL 894
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 68 SDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHT 126
SD++ ++++ DR GLLYD+ L + I I+T + +V+D F+V D L +
Sbjct: 824 SDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGE-QVVDSFYVKDMFGLKYH 882
Query: 127 RKRKEDTYE 135
+ K+ T E
Sbjct: 883 SEAKQRTLE 891
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 68 SDVF-LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL-LH 125
SD++ ++++ DR GLLYD+T L + I I+T +V+D F+V D L LH
Sbjct: 847 SDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY-GAQVVDSFYVKDMFGLKLH 905
Query: 126 TRKRKEDTYEHLKTIL 141
+ R+E + L+ +
Sbjct: 906 QKNRQETLEKKLRQAI 921
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS 234
+ DN S +T++++ +D GLLYD+ RTL NI ++
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIA 879
>sp|Q1LNG0|GLND_RALME [Protein-PII] uridylyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=glnD PE=3 SV=1
Length = 857
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R +++ + +LL +S DR GLLY + VL + +++ +I+T + +V D+F V
Sbjct: 775 RVDLRPDERGQYYLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLGE-RVEDVFLVD 833
Query: 119 DTR 121
+R
Sbjct: 834 GSR 836
>sp|Q8XZJ3|GLND_RALSO [Protein-PII] uridylyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=glnD PE=3 SV=1
Length = 861
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R +++ + +LL LS DR GLLY + VL +++ +I+T G+ ++ F+
Sbjct: 779 RVDLRPDERGQYYLLSLSATDRTGLLYAIARVLARHRVSVHTARINTL--GERVEDVFLL 836
Query: 119 DTRELLHTRK 128
D R L K
Sbjct: 837 DGRRLTQDNK 846
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 36/208 (17%)
Query: 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHT 126
++VF+ C D+ L V + + + +I +I TT DG V D F +T+ EL+
Sbjct: 687 TEVFIY---CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEF 743
Query: 127 RKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSG 186
+R+E L+ L A+ S ++ IT Q F + LH +
Sbjct: 744 DRRRE-----LEQALTLALQS--EKLSALSITPNRQLQHFTVQTDVRFLHEN-------- 788
Query: 187 SLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC 246
HT +++V D GLL + + + N+ + + + G
Sbjct: 789 ---------------KKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKITT--VGEK 831
Query: 247 EIDLFIMQADGKKIVDPSKQNGLSSRLW 274
D FI+ + +D ++ L + L+
Sbjct: 832 AEDFFILTNQFGQALDSQQREILRNVLY 859
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 128
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 129 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 184
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 185 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 238
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)
Query: 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK 128
D +++++ DR G L D L L L + K + GK + L +L RK
Sbjct: 88 DATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAIT----KLSTGRK 143
Query: 129 RKE-DTYEHLKTILGNAMISCDVEMVGTEITACSQ---ASSFLPSAIIDMLHLDMPVELP 184
E + E ++ + N MI E A SQ ++F P +++ +D+
Sbjct: 144 IGEPELLEAVRLTIINNMIQYHPE-------ASSQLALGATFGPEPPTELVDVDI----- 191
Query: 185 SGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRF 238
+++ + D P +L+ + D GLL D+++ + D NI V G F
Sbjct: 192 -----ATHIDIYDDG---PDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEF 237
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 251
VTI+N S +T++++ D GLLY++ + N+ ++ F R R D+F
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERAR-----DVF 892
Query: 252 -IMQADGKKIVDPSKQNGLSSRL 273
+ G +I P++Q+ + S L
Sbjct: 893 YVTDLLGAQINAPTRQSAIKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 195 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSRRQRGNCEIDLF 251
VTI+N S HT++++ D GLL+ + + N+ ++ F R R D+F
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERAR-----DVF 891
Query: 252 -IMQADGKKIVDPSKQNGLSSRL 273
+ G +I P++Q + L
Sbjct: 892 YVTDLLGARITAPTRQAAIKRAL 914
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E+ + ++++ DR GLL ++T ++ +L L I I+T + KV+D F+VT
Sbjct: 835 RVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGE-KVIDSFYVT 893
Query: 119 D 119
D
Sbjct: 894 D 894
>sp|Q3SKP1|GLND_THIDA [Protein-PII] uridylyltransferase OS=Thiobacillus denitrificans
(strain ATCC 25259) GN=glnD PE=3 SV=1
Length = 850
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 61 EMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT 120
++A + D +L ++C DR GLL+ + L E+++ KI T + +V D F +
Sbjct: 772 HLEADRGGDGQVLSITCADRGGLLFAIAEELMRHEISVYAAKIDTLGE-RVEDTFLIRGE 830
Query: 121 R 121
R
Sbjct: 831 R 831
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT-RELLHTRKRKE 131
L+L+ D+ GLL V V +L L++ +IST + +V DLF + D+ R L+ R++
Sbjct: 819 LELTALDQPGLLARVGEVFADLNLSLHGARISTIGE-RVEDLFILADSDRRALNPETRRK 877
>sp|C1CY24|COAD_DEIDV Phosphopantetheine adenylyltransferase OS=Deinococcus deserti
(strain VCD115 / DSM 17065 / LMG 22923) GN=coaD PE=3
SV=1
Length = 170
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 192 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 251
NVSV S G LV + Q+HKG++ +R + DY ++ + RQ G E +F
Sbjct: 64 NVSVD-----SFGGLLVDYMAQEHKGIIIRGLRAVSDYEYELQIAHLN-RQIGEVET-VF 116
Query: 252 IMQADGKKIVDPSKQNGLSS 271
IM A V S ++S
Sbjct: 117 IMAATRWSFVSSSMVREIAS 136
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 77 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHTRKRKE 131
C D+ L V + + + +I +I TT DG V D F +T+ EL+ +R+E
Sbjct: 693 CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE 748
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 77 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLHTRKRKE 131
C D+ L V + + + +I +I TT DG V D F +T+ EL+ +R+E
Sbjct: 693 CQDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE 748
>sp|B7VIS0|GLND_VIBSL [Protein-PII] uridylyltransferase OS=Vibrio splendidus (strain
LGP32) GN=glnD PE=3 SV=1
Length = 873
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
R E K L++L D GLL V A EL++ + KI+T + + DLF +T
Sbjct: 787 RVEFLPTKSKKRTLMELRALDTPGLLAQVGATFAELDINLHGAKITTIGE-RAEDLFILT 845
>sp|Q65U07|GLO2_MANSM Hydroxyacylglutathione hydrolase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=gloB PE=3 SV=1
Length = 236
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLV 208
D+ + G TA A+ + I H + V +PSG T ++VS IDN L G TL
Sbjct: 70 DIPVYGPAETADKGATHIVNEGNIQTAHYRIEV-VPSGGHTANHVSYLIDNHLFCGDTLF 128
Query: 209 QIVC 212
C
Sbjct: 129 SAGC 132
>sp|Q2L165|GLND_BORA1 [Protein-PII] uridylyltransferase OS=Bordetella avium (strain 197N)
GN=glnD PE=3 SV=1
Length = 858
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 59 RAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118
+AE+ + S + L ++ DR GLL+ + V+ E + + KI T D +V D+F ++
Sbjct: 776 QAELHPDERSQSWRLSVTATDRPGLLHALARVMAENGVNLIMAKIMTLGD-RVEDVFIIS 834
Query: 119 DTRELLHTRKRKEDTYEH 136
+ R R + +EH
Sbjct: 835 GA---VLERPRTQMQFEH 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,103,809
Number of Sequences: 539616
Number of extensions: 5896016
Number of successful extensions: 12126
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12064
Number of HSP's gapped (non-prelim): 95
length of query: 372
length of database: 191,569,459
effective HSP length: 119
effective length of query: 253
effective length of database: 127,355,155
effective search space: 32220854215
effective search space used: 32220854215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)