Query 017424
Match_columns 372
No_of_seqs 355 out of 1828
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 3.1E-29 6.6E-34 271.0 25.6 179 67-277 674-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 4.1E-29 8.9E-34 270.9 26.1 182 67-279 698-880 (884)
3 PRK00275 glnD PII uridylyl-tra 99.9 2.1E-26 4.5E-31 249.9 25.9 184 68-280 702-888 (895)
4 TIGR01693 UTase_glnD [Protein- 99.9 2.8E-26 6.1E-31 249.1 25.7 183 67-277 665-849 (850)
5 PRK04374 PII uridylyl-transfer 99.9 1.9E-25 4.2E-30 241.2 26.1 179 68-278 688-867 (869)
6 PRK05092 PII uridylyl-transfer 99.9 8.4E-25 1.8E-29 239.2 27.0 186 68-280 730-917 (931)
7 PRK03059 PII uridylyl-transfer 99.9 5.4E-25 1.2E-29 238.0 24.8 180 68-278 676-855 (856)
8 COG2844 GlnD UTP:GlnB (protein 99.9 7.2E-25 1.6E-29 226.7 20.5 179 69-278 683-862 (867)
9 PRK03381 PII uridylyl-transfer 99.9 5.3E-24 1.2E-28 228.3 23.7 176 68-274 597-773 (774)
10 PRK05007 PII uridylyl-transfer 99.9 3.2E-21 6.9E-26 209.5 24.2 172 191-369 687-875 (884)
11 cd04898 ACT_ACR-like_4 ACT dom 99.9 2.5E-23 5.4E-28 154.7 4.6 73 298-371 1-77 (77)
12 PRK01759 glnD PII uridylyl-tra 99.9 9.4E-21 2E-25 205.2 23.6 172 191-369 663-850 (854)
13 PRK04374 PII uridylyl-transfer 99.9 8.4E-21 1.8E-25 205.3 21.5 136 6-142 676-867 (869)
14 PRK00275 glnD PII uridylyl-tra 99.9 1.5E-20 3.3E-25 204.4 21.1 136 6-143 688-887 (895)
15 TIGR01693 UTase_glnD [Protein- 99.9 9.2E-20 2E-24 198.3 24.5 172 192-369 655-846 (850)
16 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.1E-20 2.3E-25 144.3 11.2 73 205-279 1-74 (75)
17 PRK03059 PII uridylyl-transfer 99.8 1.3E-19 2.7E-24 196.4 20.5 133 6-142 665-855 (856)
18 PRK03381 PII uridylyl-transfer 99.8 4E-19 8.6E-24 190.9 19.3 127 8-137 588-772 (774)
19 cd04896 ACT_ACR-like_3 ACT dom 99.8 2.5E-19 5.4E-24 136.8 10.9 75 206-280 1-75 (75)
20 COG2844 GlnD UTP:GlnB (protein 99.8 1.6E-18 3.4E-23 180.0 16.9 134 7-142 672-862 (867)
21 PRK05092 PII uridylyl-transfer 99.8 1.1E-17 2.3E-22 183.5 24.1 175 191-370 718-916 (931)
22 cd04895 ACT_ACR_1 ACT domain-c 99.8 7E-19 1.5E-23 133.3 10.1 68 205-274 1-69 (72)
23 cd04897 ACT_ACR_3 ACT domain-c 99.7 1.3E-16 2.9E-21 121.8 11.3 73 70-143 1-74 (75)
24 cd04895 ACT_ACR_1 ACT domain-c 99.7 1.6E-16 3.4E-21 120.5 10.6 68 70-138 1-69 (72)
25 cd04927 ACT_ACR-like_2 Second 99.7 4.1E-16 8.9E-21 120.2 11.5 72 72-143 2-73 (76)
26 cd04900 ACT_UUR-like_1 ACT dom 99.7 8.1E-16 1.7E-20 117.5 10.9 71 71-141 2-73 (73)
27 cd04896 ACT_ACR-like_3 ACT dom 99.6 2.2E-15 4.8E-20 115.0 10.5 71 71-142 1-73 (75)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.5E-15 9.8E-20 113.8 11.1 71 71-142 1-73 (74)
29 PRK11589 gcvR glycine cleavage 99.6 8.3E-14 1.8E-18 125.4 15.1 159 68-277 6-166 (190)
30 cd04925 ACT_ACR_2 ACT domain-c 99.5 9.6E-14 2.1E-18 106.4 10.8 71 206-278 1-73 (74)
31 cd04928 ACT_TyrKc Uncharacteri 99.5 2.9E-13 6.3E-18 101.4 10.3 66 71-141 2-67 (68)
32 cd04927 ACT_ACR-like_2 Second 99.5 4.5E-13 9.7E-18 103.2 11.2 72 207-280 2-74 (76)
33 cd04900 ACT_UUR-like_1 ACT dom 99.5 5.9E-13 1.3E-17 101.6 10.4 70 206-277 2-73 (73)
34 PRK11589 gcvR glycine cleavage 99.5 8.6E-13 1.9E-17 118.8 13.0 122 202-331 5-129 (190)
35 cd04926 ACT_ACR_4 C-terminal 99.4 8.1E-12 1.8E-16 95.1 10.6 66 71-137 2-67 (72)
36 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 3.2E-11 6.9E-16 90.7 10.5 70 71-141 1-70 (70)
37 PRK00227 glnD PII uridylyl-tra 99.3 1.1E-10 2.3E-15 123.6 16.4 144 71-278 547-691 (693)
38 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 3.5E-10 7.6E-15 84.9 10.5 69 206-277 1-70 (70)
39 COG2716 GcvR Glycine cleavage 99.2 1.9E-10 4.1E-15 99.9 10.0 160 69-278 4-164 (176)
40 COG2716 GcvR Glycine cleavage 99.1 2.9E-10 6.4E-15 98.7 9.5 116 203-326 3-121 (176)
41 cd04926 ACT_ACR_4 C-terminal 99.1 8E-10 1.7E-14 84.1 10.4 66 206-274 2-68 (72)
42 cd04873 ACT_UUR-ACR-like ACT d 99.0 3.2E-09 6.9E-14 79.3 10.6 68 72-140 2-69 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 98.8 3.7E-08 8E-13 73.5 10.4 68 206-276 1-69 (70)
44 PRK00227 glnD PII uridylyl-tra 98.8 1.6E-07 3.5E-12 99.7 15.5 144 206-370 547-692 (693)
45 cd04928 ACT_TyrKc Uncharacteri 98.7 1.3E-07 2.8E-12 71.0 9.6 65 206-277 2-67 (68)
46 PF13740 ACT_6: ACT domain; PD 98.6 3.4E-07 7.3E-12 70.3 9.9 66 70-142 2-67 (76)
47 PF13740 ACT_6: ACT domain; PD 98.6 5.7E-07 1.2E-11 69.1 11.0 66 205-278 2-67 (76)
48 PF01842 ACT: ACT domain; Int 98.6 9.4E-07 2E-11 65.0 10.5 62 71-139 1-63 (66)
49 cd04894 ACT_ACR-like_1 ACT dom 98.4 9.3E-07 2E-11 64.0 6.8 67 71-140 1-67 (69)
50 PF01842 ACT: ACT domain; Int 98.4 3.1E-06 6.7E-11 62.1 9.7 64 206-276 1-64 (66)
51 cd04893 ACT_GcvR_1 ACT domains 98.3 3.7E-06 8E-11 64.7 9.1 62 71-139 2-63 (77)
52 cd04870 ACT_PSP_1 CT domains f 98.3 2.9E-06 6.3E-11 64.8 8.4 65 207-278 1-65 (75)
53 cd04893 ACT_GcvR_1 ACT domains 98.3 5.6E-06 1.2E-10 63.7 9.8 64 205-278 1-66 (77)
54 cd04870 ACT_PSP_1 CT domains f 98.3 3.3E-06 7.1E-11 64.5 8.2 64 72-141 1-64 (75)
55 COG4747 ACT domain-containing 98.3 2.4E-05 5.2E-10 64.1 12.8 97 22-119 5-118 (142)
56 cd04875 ACT_F4HF-DF N-terminal 98.1 1.2E-05 2.7E-10 61.1 6.5 65 207-277 1-67 (74)
57 cd04875 ACT_F4HF-DF N-terminal 98.0 4.5E-05 9.8E-10 57.9 9.3 65 72-140 1-66 (74)
58 PRK07431 aspartate kinase; Pro 98.0 0.016 3.5E-07 61.3 30.0 271 22-368 272-580 (587)
59 cd04872 ACT_1ZPV ACT domain pr 97.9 2.6E-05 5.6E-10 61.4 6.7 67 206-278 2-68 (88)
60 cd04872 ACT_1ZPV ACT domain pr 97.9 4.3E-05 9.3E-10 60.2 7.6 65 71-140 2-66 (88)
61 cd04869 ACT_GcvR_2 ACT domains 97.9 0.00013 2.7E-09 56.2 9.3 63 72-139 1-68 (81)
62 PRK00194 hypothetical protein; 97.8 0.00014 3E-09 57.3 8.9 65 205-277 3-69 (90)
63 PF13291 ACT_4: ACT domain; PD 97.8 0.00014 3.1E-09 56.0 8.6 66 204-274 5-70 (80)
64 cd04869 ACT_GcvR_2 ACT domains 97.8 0.00015 3.3E-09 55.7 8.8 66 207-277 1-70 (81)
65 PF13291 ACT_4: ACT domain; PD 97.8 0.0002 4.2E-09 55.2 9.1 65 70-139 6-71 (80)
66 PRK00194 hypothetical protein; 97.8 0.00018 3.9E-09 56.7 8.8 65 70-139 3-67 (90)
67 cd04894 ACT_ACR-like_1 ACT dom 97.7 0.00014 3.1E-09 52.8 6.7 67 206-276 1-67 (69)
68 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.00043 9.3E-09 52.1 9.9 62 73-139 2-63 (74)
69 COG4747 ACT domain-containing 97.6 0.007 1.5E-07 49.9 16.0 101 71-240 4-104 (142)
70 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.00096 2.1E-08 50.2 9.2 60 208-274 2-62 (74)
71 PRK06027 purU formyltetrahydro 97.5 0.00072 1.6E-08 65.0 10.1 68 204-277 5-74 (286)
72 PRK13011 formyltetrahydrofolat 97.4 0.0018 3.9E-08 62.3 12.0 68 205-278 7-75 (286)
73 COG3830 ACT domain-containing 97.4 0.00022 4.8E-09 55.9 4.5 68 70-142 3-70 (90)
74 cd04877 ACT_TyrR N-terminal AC 97.4 0.00089 1.9E-08 50.8 7.7 58 207-274 2-59 (74)
75 COG3830 ACT domain-containing 97.4 0.00025 5.3E-09 55.7 4.5 76 205-286 3-79 (90)
76 PRK06027 purU formyltetrahydro 97.4 0.001 2.2E-08 64.1 9.4 68 68-139 4-72 (286)
77 PRK13010 purU formyltetrahydro 97.3 0.0015 3.2E-08 63.0 10.3 65 205-277 9-78 (289)
78 cd04898 ACT_ACR-like_4 ACT dom 97.3 0.00034 7.5E-09 52.7 4.5 71 207-277 2-74 (77)
79 TIGR00655 PurU formyltetrahydr 97.3 0.0014 3.1E-08 62.8 9.6 66 72-141 2-68 (280)
80 cd04889 ACT_PDH-BS-like C-term 97.2 0.0012 2.6E-08 47.0 6.6 47 73-119 1-47 (56)
81 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0021 4.5E-08 47.4 8.0 62 208-274 1-65 (73)
82 cd04886 ACT_ThrD-II-like C-ter 97.2 0.0035 7.6E-08 46.1 9.3 62 73-139 1-66 (73)
83 PRK13011 formyltetrahydrofolat 97.2 0.0025 5.5E-08 61.3 10.4 67 69-140 6-73 (286)
84 PRK13010 purU formyltetrahydro 97.2 0.0024 5.3E-08 61.4 9.8 36 69-104 8-43 (289)
85 cd04909 ACT_PDH-BS C-terminal 97.1 0.0047 1E-07 45.8 9.1 48 71-118 2-50 (69)
86 TIGR00655 PurU formyltetrahydr 97.1 0.0033 7.2E-08 60.3 10.0 63 207-275 2-66 (280)
87 cd04877 ACT_TyrR N-terminal AC 97.1 0.0028 6.1E-08 48.0 7.7 34 72-105 2-35 (74)
88 PRK06737 acetolactate synthase 97.0 0.0049 1.1E-07 47.3 8.3 65 71-140 3-67 (76)
89 cd04888 ACT_PheB-BS C-terminal 97.0 0.007 1.5E-07 45.6 8.9 63 72-139 2-65 (76)
90 COG0788 PurU Formyltetrahydrof 96.9 0.0021 4.5E-08 60.2 6.7 64 204-275 6-73 (287)
91 COG0788 PurU Formyltetrahydrof 96.9 0.0046 1E-07 57.9 8.8 68 68-139 5-73 (287)
92 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.007 1.5E-07 45.2 8.5 61 207-274 2-64 (79)
93 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.9 0.0075 1.6E-07 45.1 8.6 35 72-106 2-36 (79)
94 PRK13562 acetolactate synthase 96.9 0.006 1.3E-07 47.5 7.8 64 72-140 4-68 (84)
95 cd04908 ACT_Bt0572_1 N-termina 96.9 0.01 2.2E-07 43.8 8.7 38 71-108 2-39 (66)
96 cd04888 ACT_PheB-BS C-terminal 96.8 0.0088 1.9E-07 45.0 8.4 61 207-274 2-64 (76)
97 PRK08178 acetolactate synthase 96.8 0.0096 2.1E-07 47.6 8.5 67 68-141 6-73 (96)
98 TIGR00119 acolac_sm acetolacta 96.8 0.011 2.5E-07 51.7 9.8 65 71-141 2-67 (157)
99 cd04874 ACT_Af1403 N-terminal 96.8 0.012 2.7E-07 43.2 8.5 46 72-117 2-47 (72)
100 cd04879 ACT_3PGDH-like ACT_3PG 96.8 0.0089 1.9E-07 43.6 7.7 45 73-117 2-47 (71)
101 cd04878 ACT_AHAS N-terminal AC 96.7 0.015 3.3E-07 42.5 9.0 62 72-139 2-64 (72)
102 CHL00100 ilvH acetohydroxyacid 96.7 0.011 2.4E-07 52.7 9.4 65 71-141 3-68 (174)
103 PRK11895 ilvH acetolactate syn 96.7 0.014 3.1E-07 51.3 9.9 65 71-141 3-68 (161)
104 PRK06737 acetolactate synthase 96.7 0.0083 1.8E-07 46.0 7.4 66 206-277 3-68 (76)
105 TIGR00119 acolac_sm acetolacta 96.7 0.0092 2E-07 52.3 8.6 67 206-278 2-68 (157)
106 cd04909 ACT_PDH-BS C-terminal 96.7 0.02 4.3E-07 42.4 9.0 61 206-275 2-64 (69)
107 PRK13562 acetolactate synthase 96.7 0.0088 1.9E-07 46.6 7.1 67 206-277 3-69 (84)
108 PRK08577 hypothetical protein; 96.6 0.017 3.6E-07 49.3 9.6 70 201-274 52-121 (136)
109 CHL00100 ilvH acetohydroxyacid 96.6 0.015 3.2E-07 51.8 9.3 67 206-278 3-69 (174)
110 cd04878 ACT_AHAS N-terminal AC 96.6 0.018 3.9E-07 42.1 8.5 60 207-274 2-63 (72)
111 cd04908 ACT_Bt0572_1 N-termina 96.6 0.028 6.1E-07 41.4 9.3 64 21-99 2-65 (66)
112 cd04905 ACT_CM-PDT C-terminal 96.5 0.029 6.3E-07 43.0 9.4 66 206-275 2-68 (80)
113 cd04905 ACT_CM-PDT C-terminal 96.5 0.034 7.4E-07 42.6 9.7 49 71-119 2-50 (80)
114 PRK11152 ilvM acetolactate syn 96.5 0.022 4.7E-07 43.7 8.3 63 71-140 4-67 (76)
115 cd04903 ACT_LSD C-terminal ACT 96.5 0.024 5.3E-07 41.3 8.4 45 73-117 2-47 (71)
116 PRK08178 acetolactate synthase 96.5 0.014 3.1E-07 46.6 7.3 68 204-278 7-74 (96)
117 cd04882 ACT_Bt0572_2 C-termina 96.4 0.014 2.9E-07 42.4 6.8 33 207-239 1-33 (65)
118 cd02116 ACT ACT domains are co 96.4 0.027 5.8E-07 38.0 8.0 47 73-119 1-47 (60)
119 PRK08577 hypothetical protein; 96.4 0.034 7.4E-07 47.4 9.9 67 69-139 55-122 (136)
120 PRK11895 ilvH acetolactate syn 96.4 0.021 4.5E-07 50.3 8.7 67 206-278 3-69 (161)
121 cd04903 ACT_LSD C-terminal ACT 96.4 0.025 5.3E-07 41.3 8.0 32 208-239 2-33 (71)
122 cd04902 ACT_3PGDH-xct C-termin 96.4 0.019 4.1E-07 42.7 7.3 47 73-119 2-49 (73)
123 cd04882 ACT_Bt0572_2 C-termina 96.4 0.019 4E-07 41.7 7.1 46 72-117 1-47 (65)
124 cd04876 ACT_RelA-SpoT ACT dom 96.3 0.041 9E-07 39.0 8.7 45 73-117 1-45 (71)
125 PRK07431 aspartate kinase; Pro 96.3 1.2 2.6E-05 47.3 23.0 160 18-235 346-552 (587)
126 cd04889 ACT_PDH-BS-like C-term 96.3 0.015 3.4E-07 41.2 6.1 46 208-254 1-46 (56)
127 cd04931 ACT_PAH ACT domain of 96.3 0.018 4E-07 45.6 7.1 66 299-369 16-83 (90)
128 cd04883 ACT_AcuB C-terminal AC 96.2 0.042 9.1E-07 40.8 8.6 69 21-100 2-70 (72)
129 cd04884 ACT_CBS C-terminal ACT 96.2 0.034 7.3E-07 41.7 8.0 33 73-105 2-34 (72)
130 cd04931 ACT_PAH ACT domain of 96.2 0.033 7.1E-07 44.2 8.2 73 201-278 10-83 (90)
131 cd04929 ACT_TPH ACT domain of 96.2 0.018 4E-07 43.9 6.3 62 302-367 5-66 (74)
132 cd04876 ACT_RelA-SpoT ACT dom 96.1 0.045 9.7E-07 38.8 8.0 60 208-274 1-61 (71)
133 PRK04435 hypothetical protein; 96.0 0.07 1.5E-06 46.2 10.0 69 67-139 66-134 (147)
134 cd04874 ACT_Af1403 N-terminal 95.9 0.063 1.4E-06 39.3 8.2 33 207-239 2-34 (72)
135 cd04879 ACT_3PGDH-like ACT_3PG 95.9 0.03 6.5E-07 40.7 6.3 32 208-239 2-33 (71)
136 cd04904 ACT_AAAH ACT domain of 95.9 0.028 6E-07 42.7 6.1 62 301-366 4-65 (74)
137 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.086 1.9E-06 39.7 8.8 63 209-275 3-66 (75)
138 PRK11152 ilvM acetolactate syn 95.8 0.067 1.5E-06 41.0 8.0 64 206-277 4-68 (76)
139 cd02116 ACT ACT domains are co 95.8 0.058 1.3E-06 36.2 7.1 32 208-239 1-32 (60)
140 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.046 1E-06 41.2 7.2 63 301-367 3-67 (75)
141 cd04883 ACT_AcuB C-terminal AC 95.8 0.1 2.2E-06 38.7 8.9 48 71-118 2-50 (72)
142 cd04901 ACT_3PGDH C-terminal A 95.7 0.015 3.3E-07 42.8 3.9 44 73-117 2-45 (69)
143 cd04902 ACT_3PGDH-xct C-termin 95.7 0.051 1.1E-06 40.3 6.9 46 208-253 2-47 (73)
144 PRK04435 hypothetical protein; 95.6 0.096 2.1E-06 45.4 9.4 71 197-274 61-133 (147)
145 PF13710 ACT_5: ACT domain; PD 95.6 0.042 9.2E-07 40.5 6.1 57 79-140 1-57 (63)
146 cd04901 ACT_3PGDH C-terminal A 95.6 0.018 3.9E-07 42.4 4.0 42 208-251 2-43 (69)
147 PRK07334 threonine dehydratase 95.5 0.073 1.6E-06 53.7 9.5 64 205-275 326-394 (403)
148 PRK07334 threonine dehydratase 95.4 0.12 2.6E-06 52.2 10.6 65 70-139 326-394 (403)
149 PRK10872 relA (p)ppGpp synthet 95.3 0.11 2.3E-06 56.3 10.1 64 204-274 665-730 (743)
150 cd04884 ACT_CBS C-terminal ACT 95.2 0.23 4.9E-06 37.1 9.0 67 23-98 2-69 (72)
151 PRK06635 aspartate kinase; Rev 95.2 2.5 5.5E-05 42.5 19.3 108 70-235 262-373 (404)
152 cd04904 ACT_AAAH ACT domain of 94.7 0.27 5.8E-06 37.2 8.2 48 208-257 3-51 (74)
153 PF13710 ACT_5: ACT domain; PD 94.6 0.084 1.8E-06 38.9 5.1 58 214-277 1-58 (63)
154 cd04930 ACT_TH ACT domain of t 94.4 0.11 2.4E-06 43.1 5.8 64 299-366 43-106 (115)
155 TIGR00719 sda_beta L-serine de 94.2 0.2 4.4E-06 45.9 7.9 54 201-254 144-197 (208)
156 cd04871 ACT_PSP_2 ACT domains 94.2 0.048 1E-06 42.5 3.2 60 207-276 1-72 (84)
157 PRK11092 bifunctional (p)ppGpp 94.1 0.33 7.1E-06 52.5 10.4 64 204-274 625-689 (702)
158 COG0077 PheA Prephenate dehydr 94.1 0.39 8.4E-06 45.9 9.8 91 44-139 158-258 (279)
159 PRK10872 relA (p)ppGpp synthet 94.1 0.28 6.1E-06 53.1 9.9 65 70-139 666-731 (743)
160 PRK06291 aspartate kinase; Pro 93.9 4.7 0.0001 41.5 18.0 104 70-235 321-431 (465)
161 PRK11092 bifunctional (p)ppGpp 93.8 0.37 8E-06 52.1 10.0 65 70-139 626-690 (702)
162 PRK06635 aspartate kinase; Rev 93.8 1.9 4.1E-05 43.4 14.6 83 19-101 261-374 (404)
163 PRK11899 prephenate dehydratas 93.7 0.8 1.7E-05 44.0 11.2 79 44-123 157-246 (279)
164 TIGR00691 spoT_relA (p)ppGpp s 93.7 0.45 9.8E-06 51.3 10.5 64 204-274 609-673 (683)
165 PLN02551 aspartokinase 93.6 2.4 5.2E-05 44.3 15.3 123 203-351 364-494 (521)
166 cd04885 ACT_ThrD-I Tandem C-te 93.5 0.42 9E-06 35.4 7.1 60 209-275 2-61 (68)
167 COG0317 SpoT Guanosine polypho 93.3 0.46 1E-05 50.9 9.5 67 202-274 624-690 (701)
168 TIGR00656 asp_kin_monofn aspar 93.2 2 4.3E-05 43.2 13.7 82 19-100 259-370 (401)
169 PRK11899 prephenate dehydratas 93.1 0.6 1.3E-05 44.8 9.3 53 205-259 194-247 (279)
170 PRK06291 aspartate kinase; Pro 93.0 3.6 7.8E-05 42.3 15.4 134 203-368 319-461 (465)
171 TIGR00691 spoT_relA (p)ppGpp s 92.8 0.65 1.4E-05 50.1 10.0 65 70-139 610-674 (683)
172 cd04885 ACT_ThrD-I Tandem C-te 92.8 0.98 2.1E-05 33.4 8.1 60 74-139 2-61 (68)
173 TIGR00719 sda_beta L-serine de 92.6 0.59 1.3E-05 42.8 8.2 51 67-117 145-196 (208)
174 PRK08210 aspartate kinase I; R 92.5 3.3 7.3E-05 41.6 14.3 82 19-100 270-372 (403)
175 TIGR00656 asp_kin_monofn aspar 92.5 3 6.5E-05 41.9 13.9 104 204-327 259-370 (401)
176 PRK08210 aspartate kinase I; R 92.2 3 6.4E-05 42.0 13.5 100 203-327 269-372 (403)
177 COG1707 ACT domain-containing 92.1 0.5 1.1E-05 41.5 6.5 39 72-110 4-42 (218)
178 cd04871 ACT_PSP_2 ACT domains 91.8 0.098 2.1E-06 40.8 1.8 62 72-139 1-71 (84)
179 COG1707 ACT domain-containing 91.7 0.7 1.5E-05 40.6 7.0 49 207-257 4-52 (218)
180 cd04929 ACT_TPH ACT domain of 91.7 1.4 3E-05 33.5 7.9 46 73-118 3-48 (74)
181 PLN02551 aspartokinase 91.5 15 0.00032 38.5 17.9 108 69-235 365-477 (521)
182 PF13840 ACT_7: ACT domain ; P 91.2 0.92 2E-05 33.4 6.3 33 203-235 4-40 (65)
183 PRK06382 threonine dehydratase 91.1 1.6 3.5E-05 44.0 10.2 68 67-139 327-398 (406)
184 PRK09034 aspartate kinase; Rev 90.6 15 0.00033 37.6 16.8 32 204-235 384-418 (454)
185 PRK11790 D-3-phosphoglycerate 89.6 1 2.2E-05 45.7 7.1 49 204-254 337-385 (409)
186 COG0317 SpoT Guanosine polypho 89.6 1.8 4E-05 46.5 9.3 43 70-113 627-669 (701)
187 PRK09181 aspartate kinase; Val 89.6 15 0.00033 38.0 15.8 102 69-235 328-434 (475)
188 cd04906 ACT_ThrD-I_1 First of 89.4 2.5 5.3E-05 32.8 7.8 61 207-275 3-64 (85)
189 COG0527 LysC Aspartokinases [A 89.3 19 0.00042 36.9 16.2 107 203-329 305-418 (447)
190 PRK11790 D-3-phosphoglycerate 88.9 0.9 2E-05 46.0 6.2 48 69-117 337-384 (409)
191 cd04906 ACT_ThrD-I_1 First of 88.9 4.6 0.0001 31.2 9.0 30 72-103 3-32 (85)
192 cd04930 ACT_TH ACT domain of t 88.8 2.7 6E-05 34.8 8.0 49 70-118 41-89 (115)
193 PRK09436 thrA bifunctional asp 88.6 7.4 0.00016 43.1 13.5 112 203-331 313-433 (819)
194 COG0440 IlvH Acetolactate synt 88.0 2 4.3E-05 37.7 6.9 67 71-142 5-71 (163)
195 COG0077 PheA Prephenate dehydr 87.9 3.2 7E-05 39.7 8.9 66 204-276 193-259 (279)
196 PRK09181 aspartate kinase; Val 87.7 32 0.0007 35.6 16.7 106 203-330 327-437 (475)
197 PRK06382 threonine dehydratase 87.7 3.3 7.1E-05 41.9 9.4 69 202-275 327-398 (406)
198 PRK10622 pheA bifunctional cho 87.3 4.4 9.5E-05 40.8 9.9 53 70-123 297-349 (386)
199 TIGR00657 asp_kinases aspartat 87.3 17 0.00036 37.1 14.4 84 19-102 301-413 (441)
200 TIGR01127 ilvA_1Cterm threonin 86.8 5.7 0.00012 39.6 10.5 68 67-139 302-373 (380)
201 PRK09084 aspartate kinase III; 86.8 16 0.00035 37.4 13.9 106 203-325 304-415 (448)
202 KOG2663 Acetolactate synthase, 86.5 1.2 2.5E-05 41.8 4.8 38 68-105 75-112 (309)
203 TIGR01127 ilvA_1Cterm threonin 86.5 3.7 8.1E-05 40.9 9.0 75 20-99 305-379 (380)
204 PRK10622 pheA bifunctional cho 86.5 4.2 9.2E-05 40.9 9.3 54 204-259 296-350 (386)
205 TIGR01327 PGDH D-3-phosphoglyc 86.4 1.2 2.7E-05 46.5 5.7 64 203-270 449-512 (525)
206 PRK13581 D-3-phosphoglycerate 86.2 1.8 3.8E-05 45.4 6.7 52 202-253 449-500 (526)
207 PRK09436 thrA bifunctional asp 85.7 17 0.00036 40.3 14.2 86 18-103 313-432 (819)
208 PRK11898 prephenate dehydratas 85.6 10 0.00022 36.5 11.1 80 43-123 158-249 (283)
209 PRK09034 aspartate kinase; Rev 85.5 11 0.00024 38.7 12.0 110 203-330 306-421 (454)
210 PF13840 ACT_7: ACT domain ; P 85.1 1 2.2E-05 33.2 3.1 35 68-102 4-42 (65)
211 PRK08198 threonine dehydratase 84.9 9 0.00019 38.5 10.9 38 67-104 324-361 (404)
212 cd04913 ACT_AKii-LysC-BS-like_ 84.6 10 0.00022 27.3 8.6 31 73-103 4-35 (75)
213 PRK08198 threonine dehydratase 83.8 8 0.00017 38.9 10.0 78 18-100 325-402 (404)
214 PRK06545 prephenate dehydrogen 83.8 1.7 3.8E-05 43.0 5.1 39 68-106 288-326 (359)
215 PRK06349 homoserine dehydrogen 83.8 5.1 0.00011 40.7 8.6 50 69-119 347-396 (426)
216 TIGR00657 asp_kinases aspartat 83.6 31 0.00067 35.2 14.2 107 203-329 300-413 (441)
217 PRK12483 threonine dehydratase 83.5 30 0.00066 36.2 14.3 146 202-366 342-502 (521)
218 PRK08818 prephenate dehydrogen 82.6 3.6 7.7E-05 41.2 6.7 48 69-118 294-342 (370)
219 PRK06349 homoserine dehydrogen 81.8 6 0.00013 40.3 8.2 66 203-274 346-411 (426)
220 cd04891 ACT_AK-LysC-DapG-like_ 81.7 8.3 0.00018 26.5 6.7 27 77-103 8-34 (61)
221 cd04932 ACT_AKiii-LysC-EC_1 AC 81.6 12 0.00027 28.2 8.0 26 212-239 11-36 (75)
222 PRK13581 D-3-phosphoglycerate 81.6 3.5 7.7E-05 43.1 6.6 51 67-117 449-500 (526)
223 PLN02317 arogenate dehydratase 81.6 16 0.00034 36.7 10.8 36 70-105 283-318 (382)
224 cd04935 ACT_AKiii-DAPDC_1 ACT 81.6 15 0.00033 27.7 8.5 56 213-275 12-67 (75)
225 PRK09224 threonine dehydratase 81.3 41 0.00089 35.1 14.3 115 202-327 325-454 (504)
226 TIGR01270 Trp_5_monoox tryptop 81.1 6.4 0.00014 40.3 7.9 56 202-259 28-85 (464)
227 cd04912 ACT_AKiii-LysC-EC-like 81.1 21 0.00045 26.7 9.4 30 206-235 2-34 (75)
228 PLN02317 arogenate dehydratase 81.1 9.8 0.00021 38.2 9.1 53 205-259 283-350 (382)
229 PRK08818 prephenate dehydrogen 80.7 6.8 0.00015 39.2 8.0 49 204-255 294-343 (370)
230 PRK09084 aspartate kinase III; 80.5 73 0.0016 32.7 17.8 34 69-102 305-341 (448)
231 cd04937 ACT_AKi-DapG-BS_2 ACT 80.2 19 0.00042 25.9 8.7 29 71-99 2-33 (64)
232 TIGR01124 ilvA_2Cterm threonin 79.8 47 0.001 34.6 14.1 116 202-328 322-451 (499)
233 PRK09466 metL bifunctional asp 79.6 35 0.00075 37.8 13.6 104 203-327 315-424 (810)
234 TIGR01270 Trp_5_monoox tryptop 79.0 4.1 8.8E-05 41.7 5.7 65 299-366 33-97 (464)
235 TIGR01268 Phe4hydrox_tetr phen 78.8 8.9 0.00019 39.0 8.1 67 205-276 16-83 (436)
236 COG2150 Predicted regulator of 78.7 3.8 8.3E-05 35.8 4.7 32 72-103 95-128 (167)
237 TIGR01327 PGDH D-3-phosphoglyc 78.7 4.1 8.8E-05 42.7 5.9 50 68-117 449-499 (525)
238 PF05088 Bac_GDH: Bacterial NA 78.4 1.5E+02 0.0034 35.2 19.8 73 299-371 491-568 (1528)
239 COG2150 Predicted regulator of 78.3 4 8.8E-05 35.7 4.7 33 19-51 94-126 (167)
240 cd04919 ACT_AK-Hom3_2 ACT doma 78.3 22 0.00047 25.3 8.7 33 71-103 2-37 (66)
241 PRK06545 prephenate dehydrogen 77.7 3.3 7.1E-05 41.1 4.7 37 18-54 288-324 (359)
242 cd04922 ACT_AKi-HSDH-ThrA_2 AC 77.5 23 0.00049 25.1 8.5 30 206-235 2-34 (66)
243 PRK11898 prephenate dehydratas 77.2 16 0.00035 35.1 9.1 67 204-274 195-263 (283)
244 cd04919 ACT_AK-Hom3_2 ACT doma 77.1 22 0.00049 25.2 8.0 30 206-235 2-34 (66)
245 COG0440 IlvH Acetolactate synt 77.0 9.1 0.0002 33.7 6.6 67 206-278 5-71 (163)
246 cd04935 ACT_AKiii-DAPDC_1 ACT 76.6 28 0.00061 26.2 8.6 62 72-139 3-67 (75)
247 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.3 24 0.00053 24.9 8.7 33 71-103 2-37 (66)
248 cd04932 ACT_AKiii-LysC-EC_1 AC 76.1 27 0.00057 26.4 8.3 31 71-101 2-35 (75)
249 COG3978 Acetolactate synthase 75.9 22 0.00047 27.5 7.5 67 205-278 3-69 (86)
250 COG0527 LysC Aspartokinases [A 75.6 86 0.0019 32.2 14.3 85 18-102 305-418 (447)
251 PRK08961 bifunctional aspartat 73.6 63 0.0014 36.1 13.8 104 203-325 320-429 (861)
252 PRK12483 threonine dehydratase 72.9 1.1E+02 0.0024 32.1 14.6 84 18-103 343-474 (521)
253 COG3283 TyrR Transcriptional r 72.7 7.6 0.00016 38.7 5.5 59 299-370 2-60 (511)
254 KOG2663 Acetolactate synthase, 72.1 6 0.00013 37.2 4.5 66 204-277 76-143 (309)
255 cd04890 ACT_AK-like_1 ACT doma 71.5 31 0.00068 24.3 7.5 25 213-239 11-35 (62)
256 cd04912 ACT_AKiii-LysC-EC-like 71.2 40 0.00087 25.1 8.5 31 71-101 2-35 (75)
257 COG4492 PheB ACT domain-contai 70.2 34 0.00073 29.1 8.1 50 68-117 70-119 (150)
258 cd04934 ACT_AK-Hom3_1 CT domai 70.2 36 0.00078 25.5 7.7 53 214-275 13-65 (73)
259 cd04868 ACT_AK-like ACT domain 69.5 31 0.00067 23.1 7.9 29 207-235 2-33 (60)
260 PRK08526 threonine dehydratase 69.3 26 0.00056 35.4 8.8 71 202-275 323-394 (403)
261 PRK10820 DNA-binding transcrip 69.1 8.9 0.00019 40.1 5.6 33 299-331 2-34 (520)
262 PRK08841 aspartate kinase; Val 68.7 1E+02 0.0022 31.0 13.0 107 19-142 257-377 (392)
263 PRK08526 threonine dehydratase 66.5 45 0.00098 33.7 9.9 68 67-139 323-394 (403)
264 COG3978 Acetolactate synthase 66.4 59 0.0013 25.2 8.0 66 70-142 3-69 (86)
265 cd04924 ACT_AK-Arch_2 ACT doma 65.8 44 0.00095 23.5 8.8 33 71-103 2-37 (66)
266 cd04913 ACT_AKii-LysC-BS-like_ 65.3 11 0.00023 27.3 4.0 27 23-49 4-31 (75)
267 cd04891 ACT_AK-LysC-DapG-like_ 65.2 11 0.00023 25.9 3.8 25 27-51 8-32 (61)
268 PLN02550 threonine dehydratase 64.7 1.4E+02 0.0031 31.8 13.5 116 203-329 415-543 (591)
269 TIGR01268 Phe4hydrox_tetr phen 64.5 18 0.00039 36.9 6.5 66 299-368 18-84 (436)
270 cd04937 ACT_AKi-DapG-BS_2 ACT 64.4 50 0.0011 23.6 8.5 29 206-234 2-33 (64)
271 cd04918 ACT_AK1-AT_2 ACT domai 64.2 52 0.0011 23.7 7.7 43 207-254 3-48 (65)
272 PRK10820 DNA-binding transcrip 64.0 22 0.00048 37.2 7.3 32 208-239 3-34 (520)
273 cd04921 ACT_AKi-HSDH-ThrA-like 63.4 37 0.0008 25.2 6.7 30 206-235 2-34 (80)
274 PRK08841 aspartate kinase; Val 62.5 1.4E+02 0.0031 30.0 12.6 92 203-326 256-347 (392)
275 cd04868 ACT_AK-like ACT domain 62.2 17 0.00037 24.5 4.4 32 72-103 2-36 (60)
276 cd04916 ACT_AKiii-YclM-BS_2 AC 61.1 55 0.0012 23.0 8.7 33 71-103 2-37 (66)
277 cd04892 ACT_AK-like_2 ACT doma 60.8 51 0.0011 22.5 8.7 32 72-103 2-36 (65)
278 PRK09466 metL bifunctional asp 58.6 2.3E+02 0.0049 31.6 14.2 83 19-101 316-425 (810)
279 PRK08961 bifunctional aspartat 55.5 3.4E+02 0.0073 30.4 17.4 33 69-101 321-356 (861)
280 COG4492 PheB ACT domain-contai 55.5 1.3E+02 0.0029 25.6 9.2 69 201-274 68-136 (150)
281 PRK08639 threonine dehydratase 55.3 68 0.0015 32.5 9.0 37 67-103 333-369 (420)
282 TIGR02079 THD1 threonine dehyd 55.3 72 0.0016 32.3 9.1 68 202-275 322-390 (409)
283 PRK09224 threonine dehydratase 55.1 2.7E+02 0.0058 29.1 18.1 157 68-274 326-484 (504)
284 cd04918 ACT_AK1-AT_2 ACT domai 54.2 79 0.0017 22.7 8.4 34 72-105 3-38 (65)
285 TIGR02079 THD1 threonine dehyd 54.2 1.2E+02 0.0026 30.7 10.5 68 67-139 322-390 (409)
286 PRK08639 threonine dehydratase 53.4 74 0.0016 32.2 8.9 69 202-275 333-401 (420)
287 COG3603 Uncharacterized conser 53.0 84 0.0018 26.3 7.3 36 202-239 60-98 (128)
288 COG2061 ACT-domain-containing 51.5 1.6E+02 0.0034 25.8 9.0 76 20-102 5-80 (170)
289 cd04924 ACT_AK-Arch_2 ACT doma 51.2 82 0.0018 22.0 8.6 30 206-235 2-34 (66)
290 cd04890 ACT_AK-like_1 ACT doma 50.8 44 0.00095 23.5 5.0 51 28-91 11-61 (62)
291 PRK00907 hypothetical protein; 50.6 82 0.0018 25.0 6.8 65 205-274 17-83 (92)
292 cd04915 ACT_AK-Ectoine_2 ACT d 50.5 95 0.0021 22.5 6.9 44 206-254 3-49 (66)
293 cd04892 ACT_AK-like_2 ACT doma 50.5 78 0.0017 21.5 8.5 29 207-235 2-33 (65)
294 COG3283 TyrR Transcriptional r 50.4 45 0.00097 33.5 6.3 56 208-274 3-59 (511)
295 cd04920 ACT_AKiii-DAPDC_2 ACT 49.6 95 0.0021 22.2 6.8 28 207-234 2-32 (63)
296 cd04914 ACT_AKi-DapG-BS_1 ACT 49.1 30 0.00065 25.3 4.0 31 72-102 3-34 (67)
297 PRK05925 aspartate kinase; Pro 48.9 3.1E+02 0.0068 28.1 13.1 103 204-327 299-404 (440)
298 cd04933 ACT_AK1-AT_1 ACT domai 48.8 31 0.00067 26.4 4.1 24 78-101 12-35 (78)
299 PF05088 Bac_GDH: Bacterial NA 47.4 1.5E+02 0.0032 35.4 10.9 77 68-144 487-568 (1528)
300 cd04921 ACT_AKi-HSDH-ThrA-like 46.6 1.2E+02 0.0025 22.4 8.8 33 71-103 2-37 (80)
301 cd04936 ACT_AKii-LysC-BS-like_ 46.5 94 0.002 21.3 8.1 31 72-102 2-35 (63)
302 cd04923 ACT_AK-LysC-DapG-like_ 46.0 96 0.0021 21.3 8.2 29 207-235 2-33 (63)
303 cd04934 ACT_AK-Hom3_1 CT domai 45.0 1.2E+02 0.0025 22.7 6.7 54 78-139 12-65 (73)
304 cd04914 ACT_AKi-DapG-BS_1 ACT 43.6 44 0.00094 24.4 4.1 29 22-50 3-32 (67)
305 cd04916 ACT_AKiii-YclM-BS_2 AC 43.4 1.1E+02 0.0024 21.3 8.7 30 206-235 2-34 (66)
306 cd04933 ACT_AK1-AT_1 ACT domai 42.6 1.5E+02 0.0033 22.6 8.3 25 213-239 12-36 (78)
307 PRK00907 hypothetical protein; 41.0 1.6E+02 0.0034 23.4 7.1 65 70-139 17-84 (92)
308 PRK00341 hypothetical protein; 40.1 1.3E+02 0.0029 23.6 6.6 64 205-274 17-82 (91)
309 PRK02047 hypothetical protein; 39.3 1.7E+02 0.0037 23.0 7.1 65 205-274 16-82 (91)
310 cd04915 ACT_AK-Ectoine_2 ACT d 39.1 1.5E+02 0.0032 21.4 7.4 33 71-103 3-37 (66)
311 cd04923 ACT_AK-LysC-DapG-like_ 38.8 1.3E+02 0.0028 20.6 8.0 31 72-102 2-35 (63)
312 TIGR01124 ilvA_2Cterm threonin 36.3 3E+02 0.0066 28.7 10.4 65 68-139 323-387 (499)
313 PF07524 Bromo_TP: Bromodomain 35.9 18 0.00039 27.3 0.9 24 301-325 52-75 (77)
314 cd04911 ACT_AKiii-YclM-BS_1 AC 35.3 1.3E+02 0.0029 22.9 5.6 56 214-278 13-68 (76)
315 PF13670 PepSY_2: Peptidase pr 34.9 68 0.0015 24.4 4.1 39 311-356 31-69 (83)
316 cd08357 Glo_EDI_BRP_like_18 Th 34.6 60 0.0013 25.6 4.0 46 309-356 76-121 (125)
317 PLN02550 threonine dehydratase 33.8 6.2E+02 0.013 27.1 18.3 154 69-274 416-571 (591)
318 PRK03094 hypothetical protein; 32.5 1.2E+02 0.0026 23.5 5.0 56 311-368 10-79 (80)
319 cd07247 SgaA_N_like N-terminal 31.6 2E+02 0.0044 22.1 6.6 50 68-124 60-109 (114)
320 cd04917 ACT_AKiii-LysC-EC_2 AC 31.5 1.9E+02 0.0041 20.4 7.6 27 206-232 2-31 (64)
321 PF04083 Abhydro_lipase: Parti 31.0 1.5E+02 0.0032 21.7 5.1 33 88-121 2-34 (63)
322 cd07253 Glo_EDI_BRP_like_2 Thi 30.8 96 0.0021 24.1 4.6 51 300-356 71-121 (125)
323 PRK14637 hypothetical protein; 30.7 3.6E+02 0.0077 23.3 8.7 61 80-143 7-67 (151)
324 cd07247 SgaA_N_like N-terminal 30.5 1.6E+02 0.0034 22.8 5.8 47 299-355 64-110 (114)
325 COG1400 SEC65 Signal recogniti 30.3 72 0.0016 25.4 3.5 53 311-366 34-88 (93)
326 cd04911 ACT_AKiii-YclM-BS_1 AC 30.3 1.8E+02 0.004 22.1 5.7 58 78-143 12-69 (76)
327 cd04920 ACT_AKiii-DAPDC_2 ACT 29.3 2.1E+02 0.0046 20.3 8.3 28 72-99 2-32 (63)
328 PF12681 Glyoxalase_2: Glyoxal 29.3 1.2E+02 0.0027 23.0 4.9 41 309-355 65-105 (108)
329 PF01709 Transcrip_reg: Transc 28.8 3.8E+02 0.0083 24.9 8.8 94 6-104 79-196 (234)
330 cd07238 Glo_EDI_BRP_like_5 Thi 28.8 97 0.0021 24.1 4.3 39 311-355 68-106 (112)
331 cd07258 PpCmtC_C C-terminal do 28.5 88 0.0019 26.3 4.2 41 311-356 70-110 (141)
332 PF00903 Glyoxalase: Glyoxalas 28.2 1.1E+02 0.0024 23.8 4.5 39 312-355 88-126 (128)
333 PRK02047 hypothetical protein; 27.6 3E+02 0.0066 21.6 7.0 35 69-103 15-49 (91)
334 PRK00341 hypothetical protein; 26.4 3.1E+02 0.0068 21.5 6.6 63 70-138 17-82 (91)
335 cd08351 ChaP_like ChaP, an enz 26.2 77 0.0017 25.3 3.3 46 311-356 71-117 (123)
336 PRK06724 hypothetical protein; 25.7 1E+02 0.0022 25.5 4.0 44 310-356 76-119 (128)
337 cd04936 ACT_AKii-LysC-BS-like_ 25.6 2.2E+02 0.0048 19.3 8.2 28 208-235 3-33 (63)
338 PF01571 GCV_T: Aminomethyltra 24.7 4.9E+02 0.011 22.9 8.7 104 204-315 6-115 (211)
339 cd07237 BphC1-RGP6_C_like C-te 24.3 90 0.0019 26.5 3.5 40 312-356 88-127 (154)
340 TIGR01269 Tyr_3_monoox tyrosin 24.0 1.7E+02 0.0037 30.0 5.8 66 299-367 41-107 (457)
341 PF00585 Thr_dehydrat_C: C-ter 23.5 81 0.0018 24.7 2.8 47 70-117 10-58 (91)
342 PF00120 Gln-synt_C: Glutamine 23.3 1.8E+02 0.0038 27.3 5.5 37 308-347 68-104 (259)
343 COG2902 NAD-specific glutamate 22.7 4.1E+02 0.0089 31.4 8.8 85 192-278 73-174 (1592)
344 cd08356 Glo_EDI_BRP_like_17 Th 22.5 1E+02 0.0022 24.4 3.3 44 311-355 66-109 (113)
345 PRK04998 hypothetical protein; 22.4 3.7E+02 0.0081 20.8 6.7 27 69-95 14-40 (88)
346 KOG0456 Aspartate kinase [Amin 22.3 3.6E+02 0.0078 27.4 7.5 119 204-351 392-521 (559)
347 PRK14646 hypothetical protein; 22.0 5.2E+02 0.011 22.4 9.2 61 82-143 8-68 (155)
348 PTZ00324 glutamate dehydrogena 21.9 3.7E+02 0.008 30.6 8.3 47 77-123 240-286 (1002)
349 KOG2797 Prephenate dehydratase 21.5 2.6E+02 0.0057 27.4 6.2 127 213-347 190-337 (377)
350 cd07253 Glo_EDI_BRP_like_2 Thi 21.3 2.1E+02 0.0046 22.1 5.0 51 71-124 69-119 (125)
351 PF02878 PGM_PMM_I: Phosphoglu 20.8 3.7E+02 0.0079 22.3 6.5 58 82-139 55-133 (137)
352 COG3603 Uncharacterized conser 20.7 70 0.0015 26.7 1.9 26 305-330 74-99 (128)
353 cd04907 ACT_ThrD-I_2 Second of 20.6 3.9E+02 0.0084 20.3 7.8 59 207-274 3-62 (81)
354 cd08344 MhqB_like_N N-terminal 20.6 1.1E+02 0.0025 23.9 3.2 40 309-356 66-105 (112)
355 cd08359 Glo_EDI_BRP_like_22 Th 20.5 1.4E+02 0.0031 23.3 3.8 39 311-355 77-115 (119)
356 COG1255 Uncharacterized protei 20.1 1.5E+02 0.0033 24.8 3.7 38 309-351 23-61 (129)
357 PRK14634 hypothetical protein; 20.1 5.8E+02 0.013 22.1 9.0 61 82-143 8-68 (155)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=3.1e-29 Score=271.04 Aligned_cols=179 Identities=21% Similarity=0.308 Sum_probs=154.2
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccc
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI 146 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~ 146 (372)
..+.+.|+|+++||||||++|+++|+.+|+||++|+|.|+.+|+++|+|+|++.+|.+++++++++|++.|.++|.+...
T Consensus 674 ~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~~ 753 (854)
T PRK01759 674 SRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTNKL 753 (854)
T ss_pred CCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 44789999999999999999999999999999999999989999999999999999877778899999999999976420
Q ss_pred ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424 147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL 226 (372)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L 226 (372)
. .. ....++ ....+..||+|.|+|+.+..+|+|+|.+.|||||||+|+++|
T Consensus 754 ~--------~~------~~~~~~---------------~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l 804 (854)
T PRK01759 754 K--------KL------NLEENH---------------KLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVF 804 (854)
T ss_pred c--------ch------hccccc---------------cccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHH
Confidence 0 00 000011 111235689999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424 227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
.++|++|+.|||+ |.|++++|+|||+ .+|+|++++++ ++|+++|.+++
T Consensus 805 ~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 805 SELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 9999999999999 9999999999997 68999987655 99999998776
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=4.1e-29 Score=270.90 Aligned_cols=182 Identities=22% Similarity=0.230 Sum_probs=156.9
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccc
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI 146 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~ 146 (372)
..+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.++++++++++++.|.++|.+...
T Consensus 698 ~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~~ 777 (884)
T PRK05007 698 TRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSP 777 (884)
T ss_pred CCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 34689999999999999999999999999999999999999999999999999998877778899999999999976421
Q ss_pred ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424 147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL 226 (372)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L 226 (372)
.. + .. ...++ ....+..+|+|.|+|+.++.+|+|+|.+.|||||||+|+++|
T Consensus 778 ~~------~-~~------~~~~~---------------~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l 829 (884)
T PRK05007 778 QP------P-KP------RRLPA---------------KLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIF 829 (884)
T ss_pred Cc------c-cc------ccccc---------------ccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHH
Confidence 00 0 00 00111 112245689999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.++|++|++|||+ |.|++++|+|||+ .+|.|++ +++++.|+++|.+++..
T Consensus 830 ~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 830 ADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999 9999999999997 6799997 77899999999998864
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.1e-26 Score=249.92 Aligned_cols=184 Identities=22% Similarity=0.254 Sum_probs=156.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC--CHhHHHHHHHHHHHHHcccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAM 145 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~--~~~~~~~l~~~L~~~L~~~~ 145 (372)
++.+.|.|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.++ +++++++|++.|.++|.+..
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~ 781 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD 781 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999999999999999999999999999998763 35789999999999997643
Q ss_pred cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHH
Q 017424 146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT 225 (372)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~ 225 (372)
... ... ..+.+++ ...+..+|.|.|++..+.++|+|+|.+.||||||++|+++
T Consensus 782 ~~~------~~~------~~~~~~~---------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~ 834 (895)
T PRK00275 782 DYP------TII------QRRVPRQ---------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRI 834 (895)
T ss_pred ccc------hhh------hhhhhhh---------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHH
Confidence 100 000 0011111 1123457899999999999999999999999999999999
Q ss_pred HHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424 226 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 280 (372)
Q Consensus 226 L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~ 280 (372)
|+++|+||..|+|+ |.|+++.|+|||+ .+|.++.+++++++|+++|.+++..+
T Consensus 835 L~~~~l~I~~AkI~--T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 835 FLEFDLSLQNAKIA--TLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHCCCEEEEeEEE--ecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999 7799999999997 68999988889999999999999754
No 4
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.95 E-value=2.8e-26 Score=249.06 Aligned_cols=183 Identities=22% Similarity=0.269 Sum_probs=153.5
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCC-HhHHHHHHHHHHHHHcccc
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHT-RKRKEDTYEHLKTILGNAM 145 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~-~~~~~~l~~~L~~~L~~~~ 145 (372)
+.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.+++ +++++++++.|.++|.+..
T Consensus 665 ~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 665 PSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA 744 (850)
T ss_pred CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC
Confidence 357899999999999999999999999999999999998999999999999999887654 5678999999999997642
Q ss_pred cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHH
Q 017424 146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT 225 (372)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~ 225 (372)
... +... . ....++ +...+..+|+|.|+|+.++.+|+|+|.|.||||||++|+++
T Consensus 745 ~~~------~~~~-~---~~~~~~---------------~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~ 799 (850)
T TIGR01693 745 KDP------DTIS-A---RRARRR---------------RLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRT 799 (850)
T ss_pred ccc------cccc-c---ccCCcc---------------cccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHH
Confidence 100 0000 0 000111 11123568999999999999999999999999999999999
Q ss_pred HHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424 226 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 226 L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
|+++|++|++|+|+ |.|+++.|+||++ ..|.|+++ ++++.|+++|.+++
T Consensus 800 l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 800 LEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999 8999999999998 57999986 78899999998776
No 5
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.9e-25 Score=241.16 Aligned_cols=179 Identities=18% Similarity=0.256 Sum_probs=151.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 147 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~ 147 (372)
.+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|++++|.. .++++++++.|.++|.++...
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~~~ 765 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDLQK 765 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCCCc
Confidence 468899999999999999999999999999999999999999999999999988763 456888999999999874210
Q ss_pred cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424 148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 227 (372)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~ 227 (372)
. ... ....++ ....+.++|+|.|++..++++|+|+|.+.||||||++|+.+|+
T Consensus 766 ~-------~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~ 818 (869)
T PRK04374 766 V-------RPA-----RRAVPR---------------QLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLR 818 (869)
T ss_pred c-------ccc-----cccCcc---------------cccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHH
Confidence 0 000 000111 1123456899999999999999999999999999999999999
Q ss_pred hCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhc
Q 017424 228 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
++|+||..|+|+ |.|+++.|+|||+ .+|.++.++++ ++|+++|.+++.
T Consensus 819 ~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 819 MQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999999 7899999999997 67888876655 999999998874
No 6
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=8.4e-25 Score=239.16 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=156.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNAMI 146 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~~~~ 146 (372)
++.+.|+|+++||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++++|.+. +++++++|++.|.+++.+...
T Consensus 730 ~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 809 (931)
T PRK05092 730 RGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVR 809 (931)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999999999999999999999999888753 568899999999998865321
Q ss_pred ccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHH
Q 017424 147 SCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTL 226 (372)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L 226 (372)
.. .. ..++. +. ..+...+..+|+|.|+|..+..+|+|+|.+.||||||++|+++|
T Consensus 810 ~~-------~~---------~~~r~-~~--------~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l 864 (931)
T PRK05092 810 LP-------EA---------LAKRT-KP--------KKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL 864 (931)
T ss_pred Cc-------cc---------ccccc-Cc--------cccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHH
Confidence 00 00 00000 00 00111235678999999999999999999999999999999999
Q ss_pred HhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424 227 KDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 280 (372)
Q Consensus 227 ~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~ 280 (372)
+++|+||.+|+|. |.|+++.|+|||+ .+|.++.+++++++|+++|.+++..+
T Consensus 865 ~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 865 SDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred HHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 9999999999999 8899999999997 68999999989999999999999754
No 7
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=5.4e-25 Score=237.97 Aligned_cols=180 Identities=20% Similarity=0.220 Sum_probs=150.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 147 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~ 147 (372)
.+.+.|.|+++||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.+++|...++++++++++.|.++|.++...
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 755 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQAPL 755 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCCCc
Confidence 46889999999999999999999999999999999999999999999999998887545678999999999999764310
Q ss_pred cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424 148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 227 (372)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~ 227 (372)
. ... ....++ +...+..+++|.+++..++++|+|+|.++||||||++|+.+|+
T Consensus 756 ~-------~~~-----~~~~~~---------------~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~ 808 (856)
T PRK03059 756 P-------EPS-----KGRLSR---------------QVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA 808 (856)
T ss_pred c-------hhh-----cccccc---------------cccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence 0 000 000111 1122456789999999999999999999999999999999999
Q ss_pred hCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 228 DYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.+|+||..|+|+ |.|+++.|+|||+ +.++.+++++++|++.|.+++.
T Consensus 809 ~~~l~I~~AkI~--T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 809 EHRVSVHTAKIN--TLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HCCCeEEEEEEe--ecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999 7799999999994 3446678899999999988764
No 8
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.2e-25 Score=226.70 Aligned_cols=179 Identities=23% Similarity=0.246 Sum_probs=152.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 148 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~ 148 (372)
+.+.|.|+++|+|.||+.+++++...|+||++|+|+|+.+|+++|+|+|++++|.++++.+...++..|.+++.....
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~-- 760 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKA-- 760 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCC--
Confidence 678999999999999999999999999999999999999999999999999999888888888888888888865310
Q ss_pred ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424 149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD 228 (372)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~ 228 (372)
.+.. ....++ +..++.++|+|.|.|..+..+|+|||.+.||||||++++++|++
T Consensus 761 -----~~~~------~~r~~r---------------~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~d 814 (867)
T COG2844 761 -----QPPR------RRRIPR---------------KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFAD 814 (867)
T ss_pred -----CCcc------ccccCc---------------ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHh
Confidence 0100 011111 22345678999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhc
Q 017424 229 YNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 229 ~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
++++|++|||+ |.|++++|+|||+ ..|.+++ ++.++.+.+.|.+.+.
T Consensus 815 l~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 815 LGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred cccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 99999999999 9999999999998 6899994 5666777777776654
No 9
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=5.3e-24 Score=228.30 Aligned_cols=176 Identities=19% Similarity=0.269 Sum_probs=142.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 147 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~ 147 (372)
.+.+.|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|.... ++++++.|+++|.+....
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~~---~~~l~~~L~~~L~~~~~~ 672 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPPD---AALLRQDLRRALDGDLDV 672 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcch---HHHHHHHHHHHHcCCCch
Confidence 57899999999999999999999999999999999987 79999999999998886432 588999999998764210
Q ss_pred cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424 148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 227 (372)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~ 227 (372)
. ....... ....++ +...+..++.|.+++..+.++|+|+|.+.||||||++|+++|+
T Consensus 673 ~------~~~~~~~--~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~ 729 (774)
T PRK03381 673 L------ARLAARE--AAAAAV---------------PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALE 729 (774)
T ss_pred h------hhhhccc--cccccc---------------ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHH
Confidence 0 0000000 000001 1112345789999999999999999999999999999999999
Q ss_pred hCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424 228 DYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 228 ~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~ 274 (372)
++|+||..|+|. |.|+++.|+|||+ .+|.+++++ ++.|+++|.
T Consensus 730 ~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 730 RAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 999999999999 7899999999997 679999865 788888875
No 10
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.88 E-value=3.2e-21 Score=209.54 Aligned_cols=172 Identities=20% Similarity=0.232 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424 191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 269 (372)
Q Consensus 191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l 269 (372)
.+|.|.+++.++.++|.|+|.++||||||++|+.+|+.+|+||.+|+|.| +.++.+.|+|||. .+|.+++ ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T-~~dg~alD~F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFT-SRDGMAMDTFIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEE-cCCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence 46788899999999999999999999999999999999999999999984 3345999999997 6789884 6788999
Q ss_pred HHHHHHHhcCCceEEEeec-----C----CCcceee-------eeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeee
Q 017424 270 SSRLWMELLQPLRVTVVSR-----G----PDTELLV-------ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH 333 (372)
Q Consensus 270 ~~~L~~~l~~~~~v~i~~~-----g----~~~~~~~-------~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~ 333 (372)
+++|.+++..+.......+ . ..+.+.+ .+.+||.+.||||||++|+++|.++|++|.+|.|.+
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T- 843 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT- 843 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence 9999999976531110010 0 0122211 357999999999999999999999999999999998
Q ss_pred ccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424 334 MIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 369 (372)
Q Consensus 334 ~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~ 369 (372)
.|++ ++++|||.|.+|.|++ .+-.+.+++.|+
T Consensus 844 -~ger--a~DvFyV~~~~g~~l~-~~~~~~l~~~L~ 875 (884)
T PRK05007 844 -IGER--VEDLFILATADRRALN-EELQQELRQRLT 875 (884)
T ss_pred -cCce--EEEEEEEEcCCCCcCC-HHHHHHHHHHHH
Confidence 6667 9999999999999998 334566666554
No 11
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.88 E-value=2.5e-23 Score=154.67 Aligned_cols=73 Identities=74% Similarity=1.132 Sum_probs=69.4
Q ss_pred eeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC----hhhHHHHHHHHHhcc
Q 017424 298 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 371 (372)
Q Consensus 298 ~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~----~~~~~~~vr~~~~~~ 371 (372)
+|+|++|+.||.+++|||-+||.+|++||+|+|+||..++++||+|+|++.|..+. +. |++|+|+||+.||||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999999999999999888766 66 899999999999999
No 12
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.87 E-value=9.4e-21 Score=205.24 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=141.7
Q ss_pred CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424 191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 269 (372)
Q Consensus 191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l 269 (372)
.+|.|.+++.++.++|.|+|.++||||||++|+.+|..+|+||.+|+|.| +.++.+.|+|||. .+|.++. +++++.|
T Consensus 663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T-~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIIT-SQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEE-ccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 46788899999999999999999999999999999999999999999983 4889999999997 6899984 6788999
Q ss_pred HHHHHHHhcCCceEEE---ee-c----CCCccee-------eeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeec
Q 017424 270 SSRLWMELLQPLRVTV---VS-R----GPDTELL-------VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM 334 (372)
Q Consensus 270 ~~~L~~~l~~~~~v~i---~~-~----g~~~~~~-------~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~ 334 (372)
++.|..++..+..... .+ . ...+.+. ..+.++|.+.||||||++|+++|.++|++|.+|.|.+
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T-- 818 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT-- 818 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc--
Confidence 9999999976542111 00 0 0112222 1357999999999999999999999999999999998
Q ss_pred cCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424 335 IGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 369 (372)
Q Consensus 335 ~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~ 369 (372)
.|++ ++++|||.|.+|+|++.++. +.+++.|+
T Consensus 819 ~ger--v~D~Fyv~~~~g~~l~~~~~-~~l~~~L~ 850 (854)
T PRK01759 819 IGEK--AEDFFILTNQQGQALDEEER-KALKSRLL 850 (854)
T ss_pred cCce--EEEEEEEECCCCCcCChHHH-HHHHHHHH
Confidence 6667 99999999999999984323 66666554
No 13
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.87 E-value=8.4e-21 Score=205.29 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=117.9
Q ss_pred CcEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec----------------
Q 017424 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE---------------- 61 (372)
Q Consensus 6 ~~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d---------------- 61 (372)
+++++.+...+..+.++|+|+++|+||||++||++|+.+|+||++|+|+|+ |+|.+
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l 755 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAAL 755 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHH
Confidence 567777766777899999999999999999999999999999999999996 88864
Q ss_pred ---------------c-------CCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424 62 ---------------M-------QAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG 109 (372)
Q Consensus 62 ---------------~-------~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~ 109 (372)
+ +|+. .++.|+|+|++.||||||++|+++|+.+|+||++|+|+|. +|
T Consensus 756 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~-g~ 834 (869)
T PRK04374 756 RQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF-GE 834 (869)
T ss_pred HHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec-CC
Confidence 0 1111 2467899999999999999999999999999999999887 89
Q ss_pred eEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 110 KVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
+++|+|||++++|.+++++..++|+++|.++|.
T Consensus 835 ~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 835 RAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred EEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 999999999998887655545999999988874
No 14
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.86 E-value=1.5e-20 Score=204.37 Aligned_cols=136 Identities=20% Similarity=0.280 Sum_probs=116.3
Q ss_pred CcEEEEEeccCC---CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec-------------
Q 017424 6 DDVVIISQSDKE---GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE------------- 61 (372)
Q Consensus 6 ~~~v~~~~~~~~---~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d------------- 61 (372)
++++++ .+.+. .+.++|+|+++||||||+++|++|+.+|+||++|+|+|+ |+|.|
T Consensus 688 ~~~v~~-~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLI-KETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEE-EecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 456664 34443 589999999999999999999999999999999999886 88864
Q ss_pred -----------------------------cCCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEE
Q 017424 62 -----------------------------MQAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 62 -----------------------------~~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
++++. ..+.|+|+|+++||||||++|+++|+.+|+||++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 01111 236789999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHcc
Q 017424 103 ISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 103 I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~ 143 (372)
|+|+ +|+++|+|||++.+|.++ +++++++|++.|.++|.+
T Consensus 847 I~T~-g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 847 IATL-GERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred EEec-CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9887 899999999999988865 457889999999999965
No 15
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.85 E-value=9.2e-20 Score=198.31 Aligned_cols=172 Identities=20% Similarity=0.239 Sum_probs=140.5
Q ss_pred CcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHH
Q 017424 192 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS 270 (372)
Q Consensus 192 ~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~ 270 (372)
.+.|.+++.....+|.|+|.++||||||++|+.+|+.+|+||.+|+|.| |.++.+.|+|||+ .+|.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~t-t~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNT-TKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE-ecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 4678888877789999999999999999999999999999999999986 6789999999998 6799998888899999
Q ss_pred HHHHHHhcCCceEE--Eeec----------CCCcceee-------eeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424 271 SRLWMELLQPLRVT--VVSR----------GPDTELLV-------ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 331 (372)
Q Consensus 271 ~~L~~~l~~~~~v~--i~~~----------g~~~~~~~-------~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~ 331 (372)
+.|.+++....... +... ...+.+.+ .+.++|.|.||||||++|+++|.++|++|.+|.|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 99999997643210 0000 01122222 35799999999999999999999999999999999
Q ss_pred eeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHh
Q 017424 332 RHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM 369 (372)
Q Consensus 332 ~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~ 369 (372)
+ .|++ +++.||+.+..|.|++- +-.+.+++.|+
T Consensus 814 t--~~~~--~~d~F~v~~~~g~~~~~-~~~~~l~~~L~ 846 (850)
T TIGR01693 814 T--FGEK--AEDVFYVTDLFGLKLTD-EEEQRLLEVLA 846 (850)
T ss_pred e--cCcc--ceeEEEEECCCCCCCCH-HHHHHHHHHHH
Confidence 8 4444 89999999999999984 34556665554
No 16
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.85 E-value=1.1e-20 Score=144.32 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=70.1
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
+|+|+|.|+|||||||+|+++|+++|++|++|+|+ |+|+++.|+|||+ .+|.|+.+++++++|+++|.+++.+
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999 9999999999997 6899999999999999999999875
No 17
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.83 E-value=1.3e-19 Score=196.40 Aligned_cols=133 Identities=23% Similarity=0.366 Sum_probs=112.6
Q ss_pred CcEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec----------------
Q 017424 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE---------------- 61 (372)
Q Consensus 6 ~~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d---------------- 61 (372)
+++|+ .+..+..+.++|+|+++||||||+++|++|+.+|+||++|+|+|+ |+|.|
T Consensus 665 ~~~v~-~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~ 743 (856)
T PRK03059 665 TPIVR-ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEH 743 (856)
T ss_pred CCeEE-EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHH
Confidence 45666 556667789999999999999999999999999999999999986 88853
Q ss_pred -----------------c-------CCCC----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC
Q 017424 62 -----------------M-------QAPK----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP 107 (372)
Q Consensus 62 -----------------~-------~~~~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~ 107 (372)
+ +|.. .++.|.|+|+++||||||++|+++|+.+|+||++|+|+|+
T Consensus 744 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~- 822 (856)
T PRK03059 744 ELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL- 822 (856)
T ss_pred HHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec-
Confidence 0 0111 2467899999999999999999999999999999999887
Q ss_pred CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 108 DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 108 ~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
+|+++|+|||+++. ..+++++++|++.|.++|.
T Consensus 823 ~~~v~DvF~V~~~~--~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 823 GERVEDTFLIDGSG--LSDNRLQIQLETELLDALA 855 (856)
T ss_pred CCEEEEEEEEcCCC--CCCHHHHHHHHHHHHHHhc
Confidence 89999999996533 2357889999999988764
No 18
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.82 E-value=4e-19 Score=190.87 Aligned_cols=127 Identities=17% Similarity=0.243 Sum_probs=106.7
Q ss_pred EEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec-------------------
Q 017424 8 VVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE------------------- 61 (372)
Q Consensus 8 ~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d------------------- 61 (372)
+++...+++ .+.++|+|+|+||||||++||++|+.+||||++|+|+|. |+|.+
T Consensus 588 ~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L 666 (774)
T PRK03381 588 VHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRAL 666 (774)
T ss_pred CEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 344455566 789999999999999999999999999999999999984 88764
Q ss_pred --c--------CCC------------C----------CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424 62 --M--------QAP------------K----------PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG 109 (372)
Q Consensus 62 --~--------~~~------------~----------~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~ 109 (372)
. ..+ . ..+.++|+|+++||||||++|+++|+++|+||++|+|+|. +|
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~-g~ 745 (774)
T PRK03381 667 DGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL-GA 745 (774)
T ss_pred cCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec-CC
Confidence 0 000 0 1246899999999999999999999999999999999876 89
Q ss_pred eEEEEEEEEcCCCCCCCHhHHHHHHHHH
Q 017424 110 KVMDLFFVTDTRELLHTRKRKEDTYEHL 137 (372)
Q Consensus 110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L 137 (372)
+++|+|||++++|.+++++ ++.|+++|
T Consensus 746 ~a~D~F~V~d~~g~~~~~~-~~~l~~~L 772 (774)
T PRK03381 746 DVVDVFYVTGAAGGPLADA-RAAVEQAV 772 (774)
T ss_pred eEEEEEEEECCCCCcCchH-HHHHHHHh
Confidence 9999999999999877655 66666665
No 19
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=2.5e-19 Score=136.76 Aligned_cols=75 Identities=63% Similarity=1.006 Sum_probs=70.9
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP 280 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~ 280 (372)
|+|+|.+.|||||||+|+++|+++|++|++|||++.|.|+++.|+|||+.+|+|++++++++.|+++|.+++.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999999877889999999999778999999999999999999998865
No 20
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.6e-18 Score=180.02 Aligned_cols=134 Identities=28% Similarity=0.383 Sum_probs=111.7
Q ss_pred cEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE--------EEEec-----------------
Q 017424 7 DVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL--------YYRAE----------------- 61 (372)
Q Consensus 7 ~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~--------f~v~d----------------- 61 (372)
++|... ..+.++.++|+||+||+|.||+.+|+.+...|+||++|+|+|+ |+|+|
T Consensus 672 ~Lv~~~-~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~ 750 (867)
T COG2844 672 PLVLIS-VRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGE 750 (867)
T ss_pred cceeee-ecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHH
Confidence 455544 3455689999999999999999999999999999999999996 77763
Q ss_pred ----------------------cCCCCC----------CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC
Q 017424 62 ----------------------MQAPKP----------SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG 109 (372)
Q Consensus 62 ----------------------~~~~~~----------~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~ 109 (372)
++|+.+ ...++++|.+.||||||++++++|++++++|++|+| ||.|+
T Consensus 751 l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkI-tT~GE 829 (867)
T COG2844 751 LIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKI-TTFGE 829 (867)
T ss_pred HHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeee-ccccc
Confidence 023332 247799999999999999999999999999999999 55789
Q ss_pred eEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 110 KVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 110 ~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
+++|+|+|++..|.+++++..+.+.+.|.+++.
T Consensus 830 rveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~ 862 (867)
T COG2844 830 RVEDVFIVTDADGQALNAELRQSLLQRLLEALL 862 (867)
T ss_pred cceeEEEEeccccccCCHHHHHHHHHHHHHHhc
Confidence 999999999999988777666666666665554
No 21
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.79 E-value=1.1e-17 Score=183.53 Aligned_cols=175 Identities=23% Similarity=0.312 Sum_probs=139.2
Q ss_pred CCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHH
Q 017424 191 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL 269 (372)
Q Consensus 191 ~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l 269 (372)
.++.|.+.+...+++|.|.|.++||||||++|+.+|+.+|+||..|+|.| +.++.+.|+|+|. .+|.++.++++++.|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t-~~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFT-TTDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEE-ecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 35678788888889999999999999999999999999999999999984 4678899999997 678888788899999
Q ss_pred HHHHHHHhcCCce--EEEeec-CC---------Cccee-------eeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEE
Q 017424 270 SSRLWMELLQPLR--VTVVSR-GP---------DTELL-------VANPVELSGKGRPLVFHDITLALKMLDICIFSAEI 330 (372)
Q Consensus 270 ~~~L~~~l~~~~~--v~i~~~-g~---------~~~~~-------~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i 330 (372)
++.|..++..... ..+..+ .+ .|.+. ..+.++|.+.||||||++|+++|.++|++|.+|.|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 9999988854321 111000 00 11111 12579999999999999999999999999999999
Q ss_pred eeeccCceeeeEEEEEEeCCCCCCCCh----hhHHHHHHHHHhc
Q 017424 331 GRHMIGDREWEVYRVLLDEGDGLSVPR----NKIEEGVWKLLMG 370 (372)
Q Consensus 331 ~~~~~~~~~~~~~~f~~~~~~g~~~~~----~~~~~~vr~~~~~ 370 (372)
.+ .|++ ++++||+.|.+|.++.. +++.+.+...|.+
T Consensus 877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 97 3555 99999999999999873 3355555555543
No 22
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=7e-19 Score=133.35 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=65.0
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~ 274 (372)
+|+|+|.+.|||||||+|+++|+++|++|++|+|+ |.|+++.|+|||+ .+|+|+.+++++++|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999 9999999999998 68999999999999999885
No 23
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=1.3e-16 Score=121.76 Aligned_cols=73 Identities=16% Similarity=0.350 Sum_probs=66.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHcc
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~~ 143 (372)
+++|+|.|+||||||++|+++|+++|++|.+|+|.| .++++.|+|||++.+|.++ ++++.++|++.|.++|..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T-~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT-DGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee-cCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999999966 6899999999999999875 577889999999998753
No 24
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.6e-16 Score=120.50 Aligned_cols=68 Identities=29% Similarity=0.352 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLK 138 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~ 138 (372)
+|+|+|.++||||||++|+++|+++|++|+.|+|.| .|++++|+|||++.+|.++ +++++++|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT-~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS-DGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee-cCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 479999999999999999999999999999999955 6899999999999999876 5677788877764
No 25
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.68 E-value=4.1e-16 Score=120.17 Aligned_cols=72 Identities=72% Similarity=1.152 Sum_probs=66.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~ 143 (372)
+++|+++||||||++++++|+++|+||++|+|+|+.+|+++|+|+|++++|...++++++++++.|.++|++
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 689999999999999999999999999999999888999999999999877755678899999999998875
No 26
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=8.1e-16 Score=117.53 Aligned_cols=71 Identities=31% Similarity=0.339 Sum_probs=64.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L 141 (372)
+.|+|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|++++|.++ ++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 5799999999999999999999999999999999998899999999999888765 5778899999888754
No 27
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.63 E-value=2.2e-15 Score=115.04 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=62.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE-eeCCCeEEEEEEEEcCCCCCC-CHhHHHHHHHHHHHHHc
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS-TTPDGKVMDLFFVTDTRELLH-TRKRKEDTYEHLKTILG 142 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~-T~~~~~~~DvF~V~~~~g~~~-~~~~~~~l~~~L~~~L~ 142 (372)
|+++|.++|||||||+|+++|+++|++|+.|+|. .|.|++++|+||| +.+|.++ ++++++.|++.|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999995 0468999999999 7777664 67888999999998875
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=4.5e-15 Score=113.77 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=64.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCC-CCCC-CHhHHHHHHHHHHHHHc
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR-ELLH-TRKRKEDTYEHLKTILG 142 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~-g~~~-~~~~~~~l~~~L~~~L~ 142 (372)
|+|+|+++||||||++|+++|+++||||++|+|+|. +|+++|+|+|++++ |.+. ++++++++++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~-~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH-NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE-CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999876 89999999999987 6644 66889999999998875
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.56 E-value=8.3e-14 Score=125.38 Aligned_cols=159 Identities=9% Similarity=0.084 Sum_probs=105.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 147 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~ 147 (372)
...++|++.|+|||||+++|+++|+++||||.+.+.. ..+|.+.-++.|.. . +...++|+..|...-.. .
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t-~lgg~Fa~i~lvs~---~---~~~~~~le~~L~~l~~~-~-- 75 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA-MLGEEFTFIMLLSG---S---WNAITLIESTLPLKGAE-L-- 75 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH-hhCCceEEEEEEeC---C---hhHHHHHHHHHHhhhhh-c--
Confidence 3678999999999999999999999999999999994 45677666676633 2 34567777777663211 1
Q ss_pred cccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHH
Q 017424 148 CDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLK 227 (372)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~ 227 (372)
+-.. .-++... . .....+..+.++|.|.|||||+++++++|+
T Consensus 76 ------~L~i---------~v~~~~~------------------~-----~~~~~~~~~~v~v~G~DrPGIV~~vT~~la 117 (190)
T PRK11589 76 ------DLLI---------VMKRTTA------------------R-----PRPAMPATVWVQVEVADSPHLIERFTALFD 117 (190)
T ss_pred ------CeEE---------EEEeccc------------------c-----ccccCCceEEEEEEECCCCCHHHHHHHHHH
Confidence 0000 0000000 0 001111258999999999999999999999
Q ss_pred hCCceEEEEEEeeeecCC--eEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424 228 DYNIQVSYGRFSRRQRGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 228 ~~~~~I~~a~i~~~t~g~--~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
++|+||.+ ++|.+++. ...+.|.+..+- .+......+.|++.|.+..
T Consensus 118 ~~~iNI~~--L~T~~~~a~~~~~~lf~~~~~v-~lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 118 SHHMNIAE--LVSRTQPAEGERPAQLHIQITA-HSPASQDAANIEQAFKALC 166 (190)
T ss_pred HcCCChhh--eEEeeecCCCCCcccEEEEEEE-EcCCCCCHHHHHHHHHHHH
Confidence 99999997 55557774 677788654210 1111223567777765444
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=9.6e-14 Score=106.38 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=65.8
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cC-CCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~-g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
|+|+|.++||||||++|+++|+++|+||..|++. |.|+.+.|.|||+ .+ |.++.++++++++++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 7799999999997 55 8888888899999999988774
No 31
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.49 E-value=2.9e-13 Score=101.36 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=57.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
+.|.|+++||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|++.+|.- -+.+++.|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 578999999999999999999999999999999999999999999999987751 245666666654
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.48 E-value=4.5e-13 Score=103.22 Aligned_cols=72 Identities=22% Similarity=0.368 Sum_probs=64.0
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHhcCC
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQP 280 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l~~~ 280 (372)
++||.++||||||++++++|+++|+||.+|+|.| |.++++.|+|||. .+|. ..++++++++++.|.+++++.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~ 74 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDS 74 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchh
Confidence 6899999999999999999999999999999984 4889999999997 4455 557788999999999998764
No 33
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.46 E-value=5.9e-13 Score=101.64 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=62.8
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
+.|+|.++||||||++++++|+.+|+||.+|+|. |. ++++.|.|||+ .+|.++.++++++++++.|.+++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~--T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIF--TTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEE--EeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 6789999999999999999999999999999998 55 68999999997 67888878888999999987653
No 34
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.46 E-value=8.6e-13 Score=118.82 Aligned_cols=122 Identities=12% Similarity=0.119 Sum_probs=91.6
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC-C
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-P 280 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~-~ 280 (372)
...+.+|++.|+|||||++.++++|+++|+||...+.+ ..|+...-.+.+. |. +...+.|+..|...-+. .
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~ 76 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELD 76 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcC
Confidence 34689999999999999999999999999999999988 7788555555553 22 23678888888766533 5
Q ss_pred ceEEEeecCC--CcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424 281 LRVTVVSRGP--DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG 331 (372)
Q Consensus 281 ~~v~i~~~g~--~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~ 331 (372)
+.+.+..... .........+++.|.|||||++++|++|.+.|+||..=.-.
T Consensus 77 L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~ 129 (190)
T PRK11589 77 LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSR 129 (190)
T ss_pred eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence 6666543221 11111135789999999999999999999999999554443
No 35
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.36 E-value=8.1e-12 Score=95.13 Aligned_cols=66 Identities=35% Similarity=0.434 Sum_probs=57.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHL 137 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L 137 (372)
+.|+|.++||||+|++|+++|+++|+||.+|+++|. +++++|+|+|+++++.+.++++++++++.|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-GDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-CCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 578999999999999999999999999999999775 679999999999887755666676665554
No 36
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=3.2e-11 Score=90.67 Aligned_cols=70 Identities=40% Similarity=0.526 Sum_probs=62.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
|.|.|.++|+||+|++|+++|+++|+||.++++.+. +++++|+|++.+++|.+.+.++++++++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATL-GERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec-CCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 478999999999999999999999999999999775 4699999999998887667778899999887653
No 37
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.26 E-value=1.1e-10 Score=123.58 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=114.8
Q ss_pred EEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccccc
Q 017424 71 FLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCD 149 (372)
Q Consensus 71 ~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~ 149 (372)
..++|.. +|++|+|.+++++|+.++++|++|++.+ +|.+...|.|....|.++++ ..+++.+..++.++.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~--~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~--- 618 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA--NGPWSAEFDVRANGPQDFDP---QEFLQAYKSGVYSELP--- 618 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec--CCceEEEEEEecCCCCCCCh---HHHHHHHHHhhcCCCC---
Confidence 4788888 9999999999999999999999999965 68888999999988887665 5677777777765421
Q ss_pred cccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhC
Q 017424 150 VEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY 229 (372)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~ 229 (372)
. .. ..+|++.+.. +++||++.||||+|+.++++|.
T Consensus 619 -------~----------~~--------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~-- 653 (693)
T PRK00227 619 -------D----------PA--------------------PGITATFWHG------NILEVRTEDRRGALGALLGVLP-- 653 (693)
T ss_pred -------c----------cc--------------------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh--
Confidence 0 00 1245666643 8999999999999999999999
Q ss_pred CceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 230 NIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 230 ~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.|.+|+++ |.|..+.|.||+.. ...+.+++..+.+++.
T Consensus 654 --~~~~~~~~--~~g~~~~~~~~~~~-------~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 654 --DLLWITAS--TPGATMIVQAALKP-------GFDRATVERDVTRVLA 691 (693)
T ss_pred --hhhhHhhc--CCCcceEEEEEecC-------cccHHHHHHHHHHHHh
Confidence 77888898 99999999999972 1135677777776654
No 38
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.16 E-value=3.5e-10 Score=84.94 Aligned_cols=69 Identities=29% Similarity=0.546 Sum_probs=61.1
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
|.|+|.+.||||+|++|+++|+++|++|.++++. +.++.+.|.|++. .+|.+. +++++++|+++|..++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhhC
Confidence 6799999999999999999999999999999998 7777999999997 677774 6678899999987653
No 39
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.16 E-value=1.9e-10 Score=99.87 Aligned_cols=160 Identities=10% Similarity=0.103 Sum_probs=108.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 148 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~ 148 (372)
++.+|++++.||||+...++++..++||||.++++... ++.+.-+..+.- +++...+|+..|.. +..+.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~-g~~~a~i~lisg------s~dav~~le~~l~~-l~~~~--- 72 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAML-GEEFAGIMLISG------SWDAVTLLEATLPL-LGAEL--- 72 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHh-hcceeEEEEEee------CHHHHHHHHHHhhc-ccccC---
Confidence 45899999999999999999999999999999999654 555544444432 35666777777655 33211
Q ss_pred ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424 149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD 228 (372)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~ 228 (372)
+.. ....|. .++ .....+..+.++|.+.||||++.++++.|.+
T Consensus 73 -------~L~-------v~m~rt--------------------~~~---~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~ 115 (176)
T COG2716 73 -------DLL-------VVMKRT--------------------GAH---PTPANPAPVWVYVDANDRPGIVEEFTALFDG 115 (176)
T ss_pred -------CeE-------EEEeec--------------------CCC---ccCCCCceEEEEEEecCCccHHHHHHHHHHh
Confidence 010 000000 011 1134556799999999999999999999999
Q ss_pred CCceEEEEEEeeeecCCeEEEEEEEec-CCCCCCChhHHHHHHHHHHHHhc
Q 017424 229 YNIQVSYGRFSRRQRGNCEIDLFIMQA-DGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 229 ~~~~I~~a~i~~~t~g~~~~d~F~v~~-~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
+|+||.+-.-.+....+.....|.++. -+-|.. -....|++++.+...
T Consensus 116 ~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~al~~ 164 (176)
T COG2716 116 HGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEALCD 164 (176)
T ss_pred cCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHHHHH
Confidence 999998743332222345677898763 345543 346778888765543
No 40
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.12 E-value=2.9e-10 Score=98.67 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=90.5
Q ss_pred CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-CCc
Q 017424 203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPL 281 (372)
Q Consensus 203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~~~ 281 (372)
..|.+|+..|.||||++..++++..+.|+||..+|++ ..|+...-+..+. | +.+....|++.|...-. +.+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--g----s~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--G----SWDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--e----CHHHHHHHHHHhhcccccCCe
Confidence 3579999999999999999999999999999999998 8888443333333 3 23567889988865544 566
Q ss_pred eEEEeecCCCcce--eeeeeEEEEeCCCCchHHHHHHHHHhCCeEEE
Q 017424 282 RVTVVSRGPDTEL--LVANPVELSGKGRPLVFHDITLALKMLDICIF 326 (372)
Q Consensus 282 ~v~i~~~g~~~~~--~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~ 326 (372)
.+.+.+.++.+.. .....+.|.++|||||+.++|..|..+|+||-
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie 121 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIE 121 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchh
Confidence 7777776664311 22236899999999999999999999999983
No 41
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.11 E-value=8e-10 Score=84.10 Aligned_cols=66 Identities=21% Similarity=0.505 Sum_probs=57.6
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~ 274 (372)
+-|+|.++||||+|++|+.+|+++|+||.+|++. |.++.+.|.|++. .+|.++ ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~--t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIS--TQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEe--cCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 5688999999999999999999999999999998 6677999999997 678887 6777787777764
No 42
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.03 E-value=3.2e-09 Score=79.29 Aligned_cols=68 Identities=35% Similarity=0.520 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
.|.|.++|+||+|++++++|+++|++|.++++.+..+ +..++|++.++++...++++++++++.|.++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999987654 9999999999876656667888888888764
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.85 E-value=3.7e-08 Score=73.46 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=57.9
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME 276 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~ 276 (372)
+.|.|.+.|+||+|++++++|+++|++|.++++. +.+++..+.|++. .++.+. ++++++.|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHhh
Confidence 3688999999999999999999999999999987 6666899999997 566663 567888999988754
No 44
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.76 E-value=1.6e-07 Score=99.70 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=110.9
Q ss_pred eEEEEEE-CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecC-CCCCCChhHHHHHHHHHHHHhcCCceE
Q 017424 206 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD-GKKIVDPSKQNGLSSRLWMELLQPLRV 283 (372)
Q Consensus 206 tvi~v~~-~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~-g~~l~~~~~~~~l~~~L~~~l~~~~~v 283 (372)
..++|.. +|+||+|..++.+|+.++.+|.+|++. + ++.+...|.|.+. |.+. ++ ..+++.+...+...+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~-~~~~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--A-NGPWSAEFDVRANGPQDF-DP---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--c-CCceEEEEEEecCCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence 5778888 999999999999999999999999998 6 6778899999854 6654 44 66788888777765532
Q ss_pred EEeecCCCcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHH
Q 017424 284 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEG 363 (372)
Q Consensus 284 ~i~~~g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~ 363 (372)
- ..+|......-+.+||...||||+|+.++++|- .|-.|.+.+ .|.. .|..||+. .| .+|..+...
T Consensus 620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~--~~--~~r~~~~~~ 685 (693)
T PRK00227 620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALK--PG--FDRATVERD 685 (693)
T ss_pred c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEec--Cc--ccHHHHHHH
Confidence 2 234444444457899999999999999999999 445555554 4455 89999997 22 358888888
Q ss_pred HHHHHhc
Q 017424 364 VWKLLMG 370 (372)
Q Consensus 364 vr~~~~~ 370 (372)
|.+.|.|
T Consensus 686 ~~~~~~~ 692 (693)
T PRK00227 686 VTRVLAG 692 (693)
T ss_pred HHHHHhc
Confidence 8887765
No 45
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.72 E-value=1.3e-07 Score=70.97 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=52.7
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
+-|.|.++|||||++.++.+|..+|+||..|+|.+ +..+.+.|.|+|. .+|+. -+.|+++|.+++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~t-t~dG~~LDtF~V~d~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFS-TDDGLALDIFVVTGWKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEE-cCCCeEEEEEEEecCCccc------hHHHHHHHHHhh
Confidence 45788999999999999999999999999999985 5567899999997 33433 356667766554
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.63 E-value=3.4e-07 Score=70.32 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=52.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
..+|++.|+||||++++++++|+++|+||.+.+..+. ++++.-.+.|.-+ ++..++++++|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~-~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL-GGRFTLIMLVSIP------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE-TTEEEEEEEEEES------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE-cCeEEEEEEEEeC------cccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999765 6777777777553 5567888888887533
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.62 E-value=5.7e-07 Score=69.07 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=53.2
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
+.+|++.|+||||++++++++|+++|+||...+.. +.+++..-.+.++. +++..++|+++|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~------~~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSI------PEDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEE------SHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEe------CcccHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999998 88998777777763 14577889999886643
No 48
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.57 E-value=9.4e-07 Score=64.95 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
|.|.|.++||||+|++++++|+++|+||..+.+.+..+ .+...++...+ ....+++.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999988765 34444454444 3445666666665
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=9.3e-07 Score=63.97 Aligned_cols=67 Identities=21% Similarity=0.292 Sum_probs=56.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
++|+|.+||+.||=.++++++.+.|++|..+.++| +|.|..-+|+|....... +-+|+.|+++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence 47999999999999999999999999999999955 678999999998744331 34688999888763
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.41 E-value=3.1e-06 Score=62.14 Aligned_cols=64 Identities=23% Similarity=0.232 Sum_probs=46.3
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 276 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~ 276 (372)
|.|.+.++||||+|++++++|+++|+||.++... +.+......|.+.. .+....+.+.++|+++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQS--SDKDGVGIVFIVIV-----VDEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEE--EESSTTEEEEEEEE-----EEGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEE--ecCCCceEEEEEEE-----CCCCCHHHHHHHHHcc
Confidence 5789999999999999999999999999998887 44442222332221 1345567777777654
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.34 E-value=3.7e-06 Score=64.70 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
++|++.|+||||++++|+++|+++|+||.+++.+. .++++.-...+..+ +...+.|++.|..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHH
Confidence 68999999999999999999999999999999977 45665443434322 1235677777776
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=2.9e-06 Score=64.84 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=47.9
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
++++.|+||||++++++++|+++|+||...+-. +.++...-.|.++. + +....+.|++.|....+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~---p--~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQI---P--DSADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEc---C--CCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999987655 66665555555552 1 11235777777766553
No 53
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.33 E-value=5.6e-06 Score=63.72 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=46.9
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHhc
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
+.+|.+.|+||||+++.|++.|+++|+||...+.. ..++ .|+.. .+... ...+.|++.|...-+
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~--~~~~----~F~m~~~~~~~~----~~~~~l~~~l~~~~~ 66 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMA--ILGT----EFALTMLVEGSW----DAIAKLEAALPGLAR 66 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceee--EEcC----EEEEEEEEEecc----ccHHHHHHHHHHHHH
Confidence 36899999999999999999999999999998877 4455 44332 22222 135778887766443
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=3.3e-06 Score=64.54 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=49.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
+++|.|+||||++++++++|+++|+||.+.+..+. ++.+.-.|.+.-+.+ ...+.+++.|+...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~-~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI-HGRLSLGILVQIPDS-----ADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE-cCeeEEEEEEEcCCC-----CCHHHHHHHHHHHH
Confidence 47899999999999999999999999999987554 566666677765433 12567777777743
No 55
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.29 E-value=2.4e-05 Score=64.09 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=76.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEEec----------cCCCCCCceEEEEEEeCCCCcHH
Q 017424 22 VITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYRAE----------MQAPKPSDVFLLKLSCYDRKGLL 84 (372)
Q Consensus 22 ~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v~d----------~~~~~~~~~~~i~v~~~DrpGLL 84 (372)
+|.|+..+|||-++..+..|...|+||..-.|.-+ ..|.+ +.|-.. ..-++-|...|+||=|
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~A~~~Lee~gF~Vr-~~dVlaVEmeD~PG~l 83 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDEAHSVLEEAGFTVR-ETDVLAVEMEDVPGGL 83 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHHHHHHHHHCCcEEE-eeeEEEEEecCCCCcH
Confidence 68899999999999999999999999987666543 22222 112111 1236777889999999
Q ss_pred HHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424 85 YDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119 (372)
Q Consensus 85 ~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~ 119 (372)
++|+.+|.++++|+..++.+++...+++-+|.+.|
T Consensus 84 ~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 84 SRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred HHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 99999999999999999999998888876666543
No 56
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=1.2e-05 Score=61.05 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=44.9
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec--CCCCCCChhHHHHHHHHHHHHh
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA--DGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~--~g~~l~~~~~~~~l~~~L~~~l 277 (372)
+|++.|+||||++++|+++|+++|+||.+.+..+...+ ..|++.. +..+ .+-..+.|++.|.+..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~----~~f~~~~~~~~~~--~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDS----GRFFMRVEFELEG--FDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCC----CeEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999998776632222 3576642 2111 0013577777776543
No 57
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.04 E-value=4.5e-05 Score=57.93 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=44.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcC-CCCCCCHhHHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDT-RELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~-~g~~~~~~~~~~l~~~L~~~ 140 (372)
+|++.|+||||++++|+++|+++|+||.+.+..+..++. .|++.-. +.+. .+-..+.+++.|+..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~---~f~~~~~~~~~~-~~~~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG---RFFMRVEFELEG-FDLSREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC---eEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence 478999999999999999999999999999986533332 2333211 1110 001256777777763
No 58
>PRK07431 aspartate kinase; Provisional
Probab=97.96 E-value=0.016 Score=61.30 Aligned_cols=271 Identities=18% Similarity=0.169 Sum_probs=150.7
Q ss_pred EEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEE-------EE-EEEecc--------------CCC-----CCCceEEE
Q 017424 22 VITVN-CPDKTGLGCDLCRIILFFGLSIVRGASV-------VL-YYRAEM--------------QAP-----KPSDVFLL 73 (372)
Q Consensus 22 ~v~v~-~~Dr~GL~~~i~~~l~~~~lnI~~a~i~-------t~-f~v~d~--------------~~~-----~~~~~~~i 73 (372)
.+++. .++++|+++++...|.++|.||.--..+ +. |.+.+. ... ...+...|
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~I 351 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKL 351 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEE
Confidence 44444 4789999999999999999999855331 12 555430 011 12467789
Q ss_pred EEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccccc
Q 017424 74 KLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDV 150 (372)
Q Consensus 74 ~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 150 (372)
.+.+. +.+|+++++.++|++.|++|.... ++ +.. +..+.+ ++..++..+.|.+.+.-.....
T Consensus 352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS--e~~--Is~vv~-------~~d~~~av~~Lh~~f~~~~~~~-- 416 (587)
T PRK07431 352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS--EVK--VSCVID-------AEDGDKALRAVCEAFELEDSQI-- 416 (587)
T ss_pred EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC--CCE--EEEEEc-------HHHHHHHHHHHHHHhccCCccc--
Confidence 99985 799999999999999999997544 32 322 222322 2234455556666663321110
Q ss_pred ccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEE-ECCcchHHHHHHHHHHhC
Q 017424 151 EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIV-CQDHKGLLYDIMRTLKDY 229 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~-~~DRpGLL~~i~~~L~~~ 229 (372)
+. .|-+. . ...++--.| ....+...|++. ..++||+++++...|+++
T Consensus 417 -----~~---------~~~~~-~---------------~~~~~v~gI--a~~~~~~~i~l~~~~~~~g~~a~if~~l~~~ 464 (587)
T PRK07431 417 -----EI---------NPTAS-G---------------QDEPEVRGV--ALDRNQAQLAIRNVPDRPGMAASIFGALAEA 464 (587)
T ss_pred -----cc---------Ccccc-C---------------CCCCcEEEE--EccCCEEEEEECCCCCCccHHHHHHHHHHHc
Confidence 00 01100 0 000110111 122345666664 458899999999999999
Q ss_pred CceEEEEEEeeee-cCCeEEEE--EEEecCCCCCCChhHHHHHHHHHHHHhcCCceEEEeecCCCcceeeeeeEEEEeC-
Q 017424 230 NIQVSYGRFSRRQ-RGNCEIDL--FIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGK- 305 (372)
Q Consensus 230 ~~~I~~a~i~~~t-~g~~~~d~--F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~v~i~~~g~~~~~~~~~~~~v~~~- 305 (372)
|++|.. +++.. .++...+- |.+.. .+-.+..++.+.|...+.. .++.+ ..+ ...+.+.|.
T Consensus 465 ~i~id~--i~~~~~~~~~~~~~isf~v~~-----~~~~~~~~~l~~l~~~~~~-~~i~~-~~~-------va~VSvVG~g 528 (587)
T PRK07431 465 NISVDM--IVQSQRCRSDGTRDISFTVPK-----EDREAAQKVLRELAKQLPG-AEVED-GPA-------IAKVSIVGAG 528 (587)
T ss_pred CCeEEE--EEecCCCCCCCceeEEEEEcH-----HHHHHHHHHHHHHHHhcCC-ceEEE-eCC-------eEEEEEECCC
Confidence 999996 54210 12111222 33331 1111222232233322211 11111 111 235788885
Q ss_pred --CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHH
Q 017424 306 --GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 368 (372)
Q Consensus 306 --DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~ 368 (372)
.+||++..+..+|.+.|++|....- . ++...++.+.+. .+.++..+-+.+
T Consensus 529 m~~~~gv~~ri~~aL~~~~I~v~~i~~-------S--~~~Is~vV~~~~----~~~av~~Lh~~f 580 (587)
T PRK07431 529 MPGTPGVAARMFRALADAGINIEMIAT-------S--EIRTSCVVAEDD----GVKALQAVHQAF 580 (587)
T ss_pred ccCCcCHHHHHHHHHHHCCCcEEEeec-------c--ceEEEEEEeHHH----HHHHHHHHHHHh
Confidence 8999999999999999999943331 1 566655534332 223455555544
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=2.6e-05 Score=61.42 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=46.7
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.++++.|+||||++++|+++|+++|+||...+-. +.+++..-.+.++ .... ....+.|++.|.....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~--~~~~--~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVD--ISES--NLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEE--eCCC--CCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999986655 5555333333333 2110 1235778887766543
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=4.3e-05 Score=60.17 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
++|++.|+||||++++|+++|+++|+||.+....+ .++.+.-.+.+.-+. . ....+.|++.|...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~-~---~~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE-S---NLDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC-C---CCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999876 456654445554331 0 11256777777773
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.88 E-value=0.00013 Score=56.17 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=45.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-----CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-----GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-----~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+|++.|+|+||++++|+++|+++|+||.+.+..+... +.+.-.+.+.-+.+ . ..+++++.|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~---~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--T---DLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--C---CHHHHHHHHHH
Confidence 3789999999999999999999999999999977541 33333344433321 1 25677777776
No 62
>PRK00194 hypothetical protein; Validated
Probab=97.82 E-value=0.00014 Score=57.34 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=46.4
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
++++++.|+||||++++++++|+++|+||....-. +.++ .|++. .+.... +...+.|++.|.+.-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~----~~~~~~~v~~~~~--~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDG----YFTMIMLVDISES--KKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCC----eeEEEEEEEecCC--CCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999985544 5555 55542 222221 112467777776544
No 63
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.81 E-value=0.00014 Score=55.96 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=48.6
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
..+-|+|.+.||||+|.+|++++++.|+||.+..+.....++.+.-.|.+. +.+.++++.|.+.|+
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHHH
Confidence 357899999999999999999999999999998877311245555556554 346778888887775
No 64
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.81 E-value=0.00015 Score=55.70 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCC--eEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN--CEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~--~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
+|++.|+||||++++|+++|+++|+||.+.+.. +.+. .....|++. .+..+ ....+++++.|.+.-
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~--~~~~~~~~~~~~~~~~~v~~p~---~~~~~~l~~~l~~l~ 70 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE--TYSAPMSGTPLFKAQATLALPA---GTDLDALREELEELC 70 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee--eecCCCCCcceEEEEEEEecCC---CCCHHHHHHHHHHHH
Confidence 478999999999999999999999999987776 5442 233466543 22222 123567777776544
No 65
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.79 E-value=0.0002 Score=55.17 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+.|.|.+.||||+|++|+.++++.|+||.+..+.+.. ++.+.-.|.+.-. +.++++.+.+.|++
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-----d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-----DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-----SHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-----CHHHHHHHHHHHHC
Confidence 35799999999999999999999999999999997764 6777666666542 24445555444433
No 66
>PRK00194 hypothetical protein; Validated
Probab=97.77 E-value=0.00018 Score=56.74 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+++++.|+||||++++++++|+++|+||.+..-.+ .++.+.-.+.+.-+ +...+ .+.+++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~-~~~~~---~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDIS-ESKKD---FAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEec-CCCCC---HHHHHHHHHH
Confidence 578999999999999999999999999999999865 45655444444322 11112 3667776666
No 67
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00014 Score=52.78 Aligned_cols=67 Identities=22% Similarity=0.375 Sum_probs=56.0
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 276 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~ 276 (372)
++|+|.|+|+.||=.|+++++.+.|++|..+-++ |.|....-+|.|......+ +-+.+.|+++|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 8999999999886433332 34678888888643
No 68
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00043 Score=52.14 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=46.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
|.+.+.||||+|++|+.++++.|.||.+....+..++.+.-.|.+.-. +.++++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-----~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-----SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-----CHHHHHHHHHHHhc
Confidence 678999999999999999999999999988866555666555665432 24455666666554
No 69
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.63 E-value=0.007 Score=49.86 Aligned_cols=101 Identities=20% Similarity=0.186 Sum_probs=70.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccccc
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDV 150 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 150 (372)
-.|++...++||=|+.++..|.++|+||..-.|.-+ +++-+--..|.. + +.-.+ +|....
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt-~dFGIiRmvV~~-------~---d~A~~----~Lee~g----- 63 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADT-GDFGIIRMVVDR-------P---DEAHS----VLEEAG----- 63 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccc-cCcceEEEEcCC-------h---HHHHH----HHHHCC-----
Confidence 368899999999999999999999999999888543 444332233322 1 11112 222110
Q ss_pred ccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCC
Q 017424 151 EMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 230 (372)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~ 230 (372)
| .|.+ .-++-|.-.|+||=|+.|+.+|.+.+
T Consensus 64 ------------------------F------------------~Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~d 94 (142)
T COG4747 64 ------------------------F------------------TVRE-------TDVLAVEMEDVPGGLSRIAEVLGDAD 94 (142)
T ss_pred ------------------------c------------------EEEe-------eeEEEEEecCCCCcHHHHHHHHhhcC
Confidence 1 2222 24677888999999999999999999
Q ss_pred ceEEEEEEee
Q 017424 231 IQVSYGRFSR 240 (372)
Q Consensus 231 ~~I~~a~i~~ 240 (372)
+|+.+...-+
T Consensus 95 iNldYiYAFv 104 (142)
T COG4747 95 INLDYIYAFV 104 (142)
T ss_pred cCceeeeeee
Confidence 9999877663
No 70
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00096 Score=50.20 Aligned_cols=60 Identities=3% Similarity=0.108 Sum_probs=45.9
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
|.+.+.||||+|.+|+.++++.|.||.+.... +. .+.+.-.|.+. +.+.++++.+.++|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ve-----v~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLV--EQGRDYTVRDITVD-----APSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEE--EecCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence 67899999999999999999999999976655 33 34444445443 446778888888875
No 71
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.48 E-value=0.00072 Score=65.03 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=49.1
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
.+++|++.|+|||||+++|+++|+++|+||...+..+...++ .|.+. .+..+ .+...+.|+++|.+.-
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~--~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDG--LIFNLETLRADFAALA 74 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCC--CCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999998776311454 57654 22212 1223677887776444
No 72
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.43 E-value=0.0018 Score=62.31 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=46.3
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecC-CCCCCChhHHHHHHHHHHHHhc
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQAD-GKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~-g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.++|+|.|+||||++++|+++|+++|+||...+-. .....+.|++..+ .-+ .....+.|+++|.+.-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~----~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF----DDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee----ecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999974433 2234456765421 111 11125677777765433
No 73
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.41 E-value=0.00022 Score=55.92 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=49.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
..+|+|.|.||||+.+.++++|+++|+||.+-.- |--+|++--.+.|.-+. .......+++.|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQ-tvm~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQ-TVMDGFFTMIMLVDISK----EVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHH-HHHhhhceeeeEEcCCh----HhccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999887 55577765455553321 12234667777766544
No 74
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.39 E-value=0.00089 Score=50.80 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=43.5
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
-|+|.+.||+|+|++|+.++++.|+||.+..+. +. +. .+++. .+.+.++++.|..+|+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~-~~----i~l~i---~v~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PK-GR----IYLNF---PTIEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cC-Ce----EEEEe---EecCHHHHHHHHHHHh
Confidence 378999999999999999999999999987765 43 22 33332 2335667777777775
No 75
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.38 E-value=0.00025 Score=55.65 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-CCceE
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPLRV 283 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~~~~v 283 (372)
..+|+|.|+||||+.+.++++|+++|+||.. |+=.-..+...-.+.+.. + + ......+++..|.+..+ .++.|
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~-~-~--~~~d~~~lr~~l~~~~~~lgv~V 76 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDI-S-K--EVVDFAALRDELAAEGKKLGVDV 76 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcC-C-h--HhccHHHHHHHHHHHHHhcCcEE
Confidence 5799999999999999999999999999996 541011222222333331 1 1 12234667776665544 23344
Q ss_pred EEe
Q 017424 284 TVV 286 (372)
Q Consensus 284 ~i~ 286 (372)
.+.
T Consensus 77 ~vq 79 (90)
T COG3830 77 RVQ 79 (90)
T ss_pred EEe
Confidence 443
No 76
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.36 E-value=0.001 Score=64.05 Aligned_cols=68 Identities=21% Similarity=0.219 Sum_probs=48.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
...++|++.|+||||++++|+++|+++|+||.+.+..+. .+|.+.-.+.+.- +.. +...+.|++.|++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~---~~~~~~L~~~L~~ 72 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGL---IFNLETLRADFAA 72 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCC---CCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999651 2444332333322 111 1226778887776
No 77
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.34 E-value=0.0015 Score=62.95 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=44.8
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cC--C-CCCCChhHHHHHHHHHHHHh
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--AD--G-KKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~--g-~~l~~~~~~~~l~~~L~~~l 277 (372)
.++|+|.|+|||||++.|+.+|+++|+||....-. .+...+.|+.. .. + ..+ ..++|+++|.+.-
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~----~d~~~~~ffm~i~~~~~~~~~~----~~~~l~~~l~~l~ 78 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF----DDDESGRFFMRVSFHAQSAEAA----SVDTFRQEFQPVA 78 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc----cccccCcEEEEEEEEcCCCCCC----CHHHHHHHHHHHH
Confidence 57999999999999999999999999999974432 23334456543 11 1 122 2466777765543
No 78
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.00034 Score=52.75 Aligned_cols=71 Identities=15% Similarity=0.280 Sum_probs=55.8
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
-+|++|+-||-.+||++-+|+.+++.|++|.|.....+++...+|.+- ..++.++.+...+.+.+++.+.+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998666678888887543 33445655656677777766543
No 79
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.29 E-value=0.0014 Score=62.76 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=47.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
+|++.|+||||+.+.|+++|+++|+||.+.+.+... ++++.-.+.+.-+ +... ..+++++.|..++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~---~~~~l~~~l~~~~ 68 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL---EESSLLAAFKSAL 68 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC---CHHHHHHHHHHHH
Confidence 689999999999999999999999999999986542 3555434444322 1112 2467777777633
No 80
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.25 E-value=0.0012 Score=47.00 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=40.1
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~ 119 (372)
+.+..+|+||.|+++++.|.++|+||.+..+....++..+-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999997765577777777754
No 81
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0021 Score=47.41 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=41.1
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC---CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG---NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g---~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
+.|..+|+||+|++|+.+|++.|+||.+.... ... ......++++.+ +.+.++++.+.++|.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~--~~~~~~~~~~~~~~i~v~---~~~~~~l~~l~~~l~ 65 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD--RAFKTLPLGEVEVELTLE---TRGAEHIEEIIAALR 65 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE--eccCCCCCceEEEEEEEE---eCCHHHHHHHHHHHH
Confidence 35788999999999999999999999865443 221 112223334321 224556777777765
No 82
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.0035 Score=46.13 Aligned_cols=62 Identities=23% Similarity=0.223 Sum_probs=41.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC----CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP----DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~----~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+.|..+|+||+|++|+.+|+++|+||.+....... .+...-.|.+... +.+.++.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 35778999999999999999999999988765432 3444434444331 23445555555543
No 83
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.22 E-value=0.0025 Score=61.28 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=48.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
+.+.|+|.|+||||++++++++|+++|+||.+...++.. ++.+.-.+.+..+.+ . ..+.|+++|.+.
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~--~---~~~~L~~~L~~l 73 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG--L---DEDALRAGFAPI 73 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC--C---CHHHHHHHHHHH
Confidence 467899999999999999999999999999999986433 333333344432222 1 156777777773
No 84
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.18 E-value=0.0024 Score=61.45 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=33.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 104 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~ 104 (372)
..++|+|.|+|||||.+.|+++|+++|+||.+..-+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 457899999999999999999999999999999986
No 85
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0047 Score=45.81 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=36.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCC-eEEEEEEEE
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDG-KVMDLFFVT 118 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~-~~~DvF~V~ 118 (372)
+.+.+..+|+||.|+++++.|+++|+||.+.......++ ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 568889999999999999999999999998887654322 233345553
No 86
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.11 E-value=0.0033 Score=60.27 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=43.4
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+|++.|+||||+++.|+..|+++|+||....-.+. ...+.|++. .+.... ....+.|++.|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~----~~~~~F~mr~~v~~~~~--~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD----PETGRFFMRVEFQLEGF--RLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc----CCCCeEEEEEEEEeCCC--CCCHHHHHHHHHH
Confidence 68999999999999999999999999998665522 222366543 222221 1124667777666
No 87
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.11 E-value=0.0028 Score=48.02 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=31.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 105 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T 105 (372)
.|.|.+.||+|+|++|+.++++.|+||.+..+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~ 35 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDP 35 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEec
Confidence 4789999999999999999999999999999855
No 88
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.02 E-value=0.0049 Score=47.26 Aligned_cols=65 Identities=11% Similarity=0.168 Sum_probs=45.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
..+.+...|+||.|++|+++|+..|.||.+-.+.-+.+....-+..+.. | ++...+++.+.|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~---~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C---TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C---CHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999998886444332222222222 2 245567777777663
No 89
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.007 Score=45.55 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=43.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHh-HHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRK-RKEDTYEHLKT 139 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~-~~~~l~~~L~~ 139 (372)
.+.+.+.|+||+|++|+++|+++|+||......+..++.+.-.|.+...+ .+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-----~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-----MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-----hHHHHHHHHHHHhc
Confidence 47889999999999999999999999999876443345444445554321 22 44555555544
No 90
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0021 Score=60.23 Aligned_cols=64 Identities=17% Similarity=0.314 Sum_probs=48.9
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec----CCCCCCChhHHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA----DGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~----~g~~l~~~~~~~~l~~~L~~ 275 (372)
..+++.+.|+|+|||++.|+..|.++|+||.++. ...+...-.|+.+. ++.+. ..+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~----qf~D~~~g~FFmR~~f~~~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSD----QFDDPETGRFFMRVEFEGEGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecc----cccccccCeEEEEEEEecCCCcc----cHHHHHHHHHH
Confidence 5689999999999999999999999999999754 34555566787752 34442 34667777765
No 91
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0046 Score=57.94 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=47.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+..+++++.|+|++||.+.|++.|+++||||.++.-++.. .|++.---.... .+.+ ...+.+++.+..
T Consensus 5 ~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~---~~~~~l~~~f~~ 73 (287)
T COG0788 5 PDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGP---LDREALRAAFAP 73 (287)
T ss_pred ccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCc---ccHHHHHHHHHH
Confidence 4568999999999999999999999999999999997543 344321111111 2221 224667777666
No 92
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.007 Score=45.22 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=42.8
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC--CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG--NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g--~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.|.+.+.||||+|.+++++|+++|+||...... +.. +.+.=.|.+. ..+.++++++.+.|.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~--~~~~~~~~~~~i~~~-----~~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQK--EADGGETAPVVIVTH-----ETSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc--ccCCCCceeEEEEEc-----cCCHHHHHHHHHHHH
Confidence 578899999999999999999999999976554 322 2222222222 225667777777775
No 93
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0075 Score=45.07 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=31.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 106 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~ 106 (372)
.|.+.+.|+||+|++++.+|+++|+||.+....+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 47889999999999999999999999999887443
No 94
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.88 E-value=0.006 Score=47.53 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=45.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeE-EEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKV-MDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~-~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
.|.+...|+||.|++|++.|+..|+||.+-.+..+.+..+ --++.+. .| ++...+++.+.|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~---d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ---DDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC---CHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999866544322 2223332 12 245567777777663
No 95
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.01 Score=43.77 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD 108 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~ 108 (372)
..+.|..+|+||.|++++.+|+++|+||.+..+....+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 46788999999999999999999999999999876533
No 96
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.0088 Score=44.98 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=42.9
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChh-HHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPS-KQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~-~~~~l~~~L~ 274 (372)
.+.+.+.||||+|++|+++|+++|+||...... +. ++.+.=.|.+. +.+.+ .++.|.++|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~--~~~~~~~~i~~~v~-----v~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQN--IPIHGRANVTISID-----TSTMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeC--CCCCCeEEEEEEEE-----cCchHHHHHHHHHHHh
Confidence 378899999999999999999999999974433 32 23333344443 22444 6777877775
No 97
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.80 E-value=0.0096 Score=47.59 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=47.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe-EEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK-VMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~-~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
.....|.+...|+||+|++|++.|+..|.||.+-.+.-+.+.. .--++ +.. + ++.++++.+.|.+..
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmti-vv~-~-----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWL-LVN-D-----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEE-EEc-C-----chHHHHHHHHHhCCc
Confidence 3456799999999999999999999999999998876554332 21122 222 1 345677777777743
No 98
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.79 E-value=0.011 Score=51.69 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=49.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
..+++...|+||.|++|+++|++.|+||.+-.+..+. .+...-+|.|.. ++...+++.+.|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 3688999999999999999999999999999887664 355544455532 2455677777777743
No 99
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.75 E-value=0.012 Score=43.16 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=35.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 117 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V 117 (372)
.+.+.++|+||.|++++..|+++++||.+....+..++...-.|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~ 47 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL 47 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence 5788999999999999999999999999888754333443323444
No 100
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.75 E-value=0.0089 Score=43.58 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=37.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV 117 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V 117 (372)
+.+.+.|++|++++|+++|+++|+||.+....... ++...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999986543 3566556666
No 101
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.75 E-value=0.015 Score=42.48 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=43.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+.+.+.|+||+|++++.+|+++|++|.+....+. .++.+.-.|.+.. .+ +..+.+.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHhC
Confidence 36788999999999999999999999999988654 3444433344432 12 345555555543
No 102
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.75 E-value=0.011 Score=52.67 Aligned_cols=65 Identities=14% Similarity=0.235 Sum_probs=46.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
..+.+.+.|+||+|++|+++|+..|+||.+-.+..+.+ |.. -+.+.-+. ++...++|.++|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~----~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPG----DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEEC----CHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999865433 322 22222211 1233678888888744
No 103
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.72 E-value=0.014 Score=51.27 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=49.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTIL 141 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L 141 (372)
..+++...|+||.|++|+++|+.+|+||.+-.+..+. .+...-+|.|.. ++...+++.+.|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999998886654 354444454432 2555777877777743
No 104
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.72 E-value=0.0083 Score=46.02 Aligned_cols=66 Identities=14% Similarity=0.132 Sum_probs=46.0
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
..|.+...|+||+|..|+.+|+..|+||.+-.+. ...+....-+.+... .+++..+.|..+|.+.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg--~te~~~~sriti~~~----~~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN--ERDTSGVSEMKLTAV----CTENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec--ccCCCCeeEEEEEEE----CCHHHHHHHHHHHhCCc
Confidence 4688999999999999999999999999974443 222223333333321 24567788888886544
No 105
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.71 E-value=0.0092 Score=52.28 Aligned_cols=67 Identities=7% Similarity=0.156 Sum_probs=48.5
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.++++...|+||.|++|+..|++.|+||.+-.+. ..++.....+.+..+| ++...+.|..+|.+.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~--~t~~~~~sriti~V~~----d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG--PTEDPDLSRMTIVVVG----DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe--ecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcCcc
Confidence 4688999999999999999999999999975554 3332333334444333 45678888888876554
No 106
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.02 Score=42.37 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=41.4
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec--CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~--g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+.+.+..+|+||.|.++++.|+++|+||.+.... .. +....-.|.++ .++..+.+.+.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~--~~~~~~~~~~~i~v~-------~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL--EIREGIGGILRISFK-------TQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE--EeecCCcEEEEEEEC-------CHHHHHHHHHHHHH
Confidence 4578889999999999999999999999976544 32 21233344443 12245666666653
No 107
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.66 E-value=0.0088 Score=46.62 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
.+|.+...|+||.|..|+..|+..|+||.+-.+. ........-+-+..+ ..|++..+++..+|.+.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg--~Te~~~iSRmtivv~---~~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT--HSEQPGISNMEIQVD---IQDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEec--ccCCCCceEEEEEEe---CCCHHHHHHHHHHHhCCc
Confidence 3688889999999999999999999999985554 333334444433321 235677788888887554
No 108
>PRK08577 hypothetical protein; Provisional
Probab=96.65 E-value=0.017 Score=49.30 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=47.6
Q ss_pred CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.....+.|.+.+.||||+|++|+++|+++++||.+........++.+.-.|.+..... +.+++.+.+.|.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~ 121 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELK 121 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHH
Confidence 4455899999999999999999999999999999765542111333334444442111 135667777764
No 109
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.61 E-value=0.015 Score=51.80 Aligned_cols=67 Identities=15% Similarity=0.204 Sum_probs=47.0
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
..+.+.+.||||+|++|+.+|+.+|+||.+-.+. .........+.+...| ++...+.|+++|.+.+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~--~t~~~~~sr~TIvv~~----~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVG--PAEQKGISRITMVVPG----DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEee--EcCCCCccEEEEEEEC----CHHHHHHHHHHHHHHhH
Confidence 4789999999999999999999999999985543 3222233344443211 23347888889876665
No 110
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.61 E-value=0.018 Score=42.09 Aligned_cols=60 Identities=8% Similarity=0.120 Sum_probs=41.5
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-C-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-G-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.+.+.+.|+||+|.+++.+|+++|++|.+.... +. + +.+.-.|.+.. .+ ++.+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG--PTEDPGISRITIVVEG-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee--ecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence 367889999999999999999999999986654 43 2 22222233331 23 56677777765
No 111
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.58 E-value=0.028 Score=41.41 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEE
Q 017424 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE 99 (372)
Q Consensus 21 ~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~ 99 (372)
.+++|..+|+||.+++++..|.++|+||.....+. . .. ...+.+.+.| ...+.++|.+.|..+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~-------~--~~--~~~~rl~~~~----~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIAD-------T--SE--FGILRLIVSD----PDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe-------c--CC--CCEEEEEECC----HHHHHHHHHHCCCEEE
Confidence 36889999999999999999999999999876541 1 11 1455555544 4578889999998764
No 112
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.53 E-value=0.029 Score=43.02 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=44.6
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+.+.+..+|+||.|+++...|+++|+||.+-... ... ....=.||++.+|. . +++..+.+-+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~-~-~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH-I-EDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC-C-CCHHHHHHHHHHHH
Confidence 4567778999999999999999999999874322 332 23445677875554 2 23445555555553
No 113
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.50 E-value=0.034 Score=42.64 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~ 119 (372)
+.+.+..+|+||.|+++...|+++|+||.+-......++...-.|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 3566777999999999999999999999988765544433344566643
No 114
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.49 E-value=0.022 Score=43.71 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=46.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE-EEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D-vF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
..+++...|+||.|++++++|+..|.||.+-.+..+.++...- ++.| . + +...+.|.+.|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~-----~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S-----ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C-----CchHHHHHHHHhcC
Confidence 5789999999999999999999999999999987654443322 3333 2 2 33467777777763
No 115
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.024 Score=41.34 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=35.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 117 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V 117 (372)
+.+...|+||.+++++..|+++|+||.+...... .++.+.-.|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v 47 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV 47 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence 5788999999999999999999999999887553 23444333444
No 116
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.45 E-value=0.014 Score=46.58 Aligned_cols=68 Identities=7% Similarity=0.079 Sum_probs=48.2
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
...+|.+...|+||+|..|+..|+..|+||.+-.+. ..+.....-+.+... +++.++++..+|.+.+.
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg--~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL--PIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLED 74 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe--ecCCCCceEEEEEEc-----CchHHHHHHHHHhCCcC
Confidence 345689999999999999999999999999984443 333333344444321 23577888888875543
No 117
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.43 E-value=0.014 Score=42.38 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.9
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
++.+.-+||||-|.+++.+|.++|+||.+....
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~ 33 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAF 33 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence 467888999999999999999999999875544
No 118
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.43 E-value=0.027 Score=37.99 Aligned_cols=47 Identities=40% Similarity=0.572 Sum_probs=35.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~ 119 (372)
|.+.++|++|+++++.++|.++|++|.........+.....+++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46889999999999999999999999999985533233334444443
No 119
>PRK08577 hypothetical protein; Provisional
Probab=96.39 E-value=0.034 Score=47.40 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=46.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+.+.+.+.+.|+||+|++|+++|+++|+||.+....+.. ++.+.-.|.+.-.+. +..++.+.+.|++
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS----DIDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc----hhhHHHHHHHHHc
Confidence 478999999999999999999999999999998876654 343433343322111 1234555555544
No 120
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.39 E-value=0.021 Score=50.26 Aligned_cols=67 Identities=7% Similarity=0.134 Sum_probs=47.8
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.++++...|+||.|++|+..|+++|+||.+-.+. ...+.....+.+..+| +++..+++..+|.+.+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~--~te~~~~sriti~V~~----~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG--PTEDPGLSRMTIVTSG----DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee--ecCCCCEEEEEEEEEC----CHHHHHHHHHHHhcccc
Confidence 4688999999999999999999999999975554 2222223333333222 45678889988876654
No 121
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.38 E-value=0.025 Score=41.32 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=28.7
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
+.+.+.||||.|.+++++|+++|++|.+....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence 57789999999999999999999999976554
No 122
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.36 E-value=0.019 Score=42.68 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=37.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEEc
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVTD 119 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~~ 119 (372)
+.+..+|+||.++++++.|+++|+||.+...... .++...-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 4568899999999999999999999998887544 3466665666533
No 123
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.36 E-value=0.019 Score=41.65 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=34.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV 117 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V 117 (372)
++.+.-+|+||-|++++++|+++|+||.+...+... .+...=.|.+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 367788999999999999999999999988775433 2444333433
No 124
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.30 E-value=0.041 Score=39.02 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=34.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 117 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V 117 (372)
|.+.+.|+||.+.+++..|.+++++|.+..+....++...-.|.+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 467899999999999999999999999998865433444333444
No 125
>PRK07431 aspartate kinase; Provisional
Probab=96.29 E-value=1.2 Score=47.27 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=100.3
Q ss_pred CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEE---EEEec-----------cC----------CCC----
Q 017424 18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVVL---YYRAE-----------MQ----------APK---- 66 (372)
Q Consensus 18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t~---f~v~d-----------~~----------~~~---- 66 (372)
.+...|++.|. +.+|+.+++.++|.+.|.||....-+.. |.+.+ +. .|.
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~ 425 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPTASGQ 425 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCccccCC
Confidence 35678899985 8899999999999999999975442111 44432 00 111
Q ss_pred ----------CCceEEEEEE-eCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC--CeEEEEEEEEcCCCCCCCHhHHHHH
Q 017424 67 ----------PSDVFLLKLS-CYDRKGLLYDVTAVLCELELTIEKVKISTTPD--GKVMDLFFVTDTRELLHTRKRKEDT 133 (372)
Q Consensus 67 ----------~~~~~~i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~--~~~~DvF~V~~~~g~~~~~~~~~~l 133 (372)
..+...|++. .++++|+++++.+.|+++|++|..-......+ |..-=.|.+.. +...+.
T Consensus 426 ~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~--------~~~~~~ 497 (587)
T PRK07431 426 DEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK--------EDREAA 497 (587)
T ss_pred CCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH--------HHHHHH
Confidence 2344566665 37889999999999999999998664321111 11111244422 222233
Q ss_pred HHHHHHHHcccccccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC
Q 017424 134 YEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ 213 (372)
Q Consensus 134 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~ 213 (372)
.+.+++ |.... + ...+.++ .+...|.+.|.
T Consensus 498 ~~~l~~-l~~~~----------------------~-----------------------~~~i~~~----~~va~VSvVG~ 527 (587)
T PRK07431 498 QKVLRE-LAKQL----------------------P-----------------------GAEVEDG----PAIAKVSIVGA 527 (587)
T ss_pred HHHHHH-HHHhc----------------------C-----------------------CceEEEe----CCeEEEEEECC
Confidence 222222 22110 0 0122222 24678888886
Q ss_pred ---CcchHHHHHHHHHHhCCceEEE
Q 017424 214 ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 214 ---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
.+||++.++.++|.+.|++|..
T Consensus 528 gm~~~~gv~~ri~~aL~~~~I~v~~ 552 (587)
T PRK07431 528 GMPGTPGVAARMFRALADAGINIEM 552 (587)
T ss_pred CccCCcCHHHHHHHHHHHCCCcEEE
Confidence 8899999999999999999975
No 126
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.28 E-value=0.015 Score=41.19 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=35.5
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 254 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~ 254 (372)
+++...|+||.|.+++..|.+.|+||.+..+.. +.++.+.-.|.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~-~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE-TRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE-ccCCcEEEEEEEC
Confidence 457889999999999999999999999877662 2235555555543
No 127
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.27 E-value=0.018 Score=45.63 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=48.2
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC--hhhHHHHHHHHHh
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWKLLM 369 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~--~~~~~~~vr~~~~ 369 (372)
.+-+..+++||-|+++-..|++.|+|+.|=+- |... ...|+ |.||+ |-+|. -+ -+++++.+++.|-
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeS-RP~~-~~~~~-Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~ 83 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIES-RPSR-LNKDE-YEFFI-NLDKK-SAPALDPIIKSLRNDIG 83 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEe-ccCC-CCCce-EEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence 45555689999999999999999999987665 4333 33566 88999 77775 23 3457788887654
No 128
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.042 Score=40.78 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEE
Q 017424 21 CVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEK 100 (372)
Q Consensus 21 ~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~ 100 (372)
+.+.+..+|+||.++++++.|+++|+||.+.... ...........+.+.+.|. .++...|.+.|..|..
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~-------~~~~~~~~~v~i~v~~~~~----~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY-------PSKEEDNKILVFRVQTMNP----RPIIEDLRRAGYEVLW 70 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe-------ccCCCCeEEEEEEEecCCH----HHHHHHHHHCCCeeeC
Confidence 5789999999999999999999999999975432 0011112234555555453 3888899999987753
No 129
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.034 Score=41.66 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=29.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 105 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T 105 (372)
+.+.-+|+||-|++++..|+++|.||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 567889999999999999999999999887644
No 130
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.21 E-value=0.033 Score=44.19 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=49.2
Q ss_pred CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.....|.|-+..+|+||-|+++-..|+++|+|+.+ |...... ....=.|||+.+|. .+ ...+.+.+.|...+.
T Consensus 10 ~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 10 NKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred CCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence 33445777777799999999999999999999996 6622222 22334788986665 23 345555566655554
No 131
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.16 E-value=0.018 Score=43.86 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=45.1
Q ss_pred EEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHH
Q 017424 302 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKL 367 (372)
Q Consensus 302 v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~ 367 (372)
+.-+|+||-|+++-..|++.|+|+.|=+- |... ...|+ |.||+ |-.|..-.-+++++.+++.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeS-RP~~-~~~~~-y~F~i-d~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIES-RKSK-RRSSE-FEIFV-DCECDQRRLDELVQLLKRE 66 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEe-ccCC-CCCce-EEEEE-EEEcCHHHHHHHHHHHHHh
Confidence 34479999999999999999999977665 4333 33566 88999 7677543334467777664
No 132
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.10 E-value=0.045 Score=38.83 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=40.9
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
|.+.+.|+||.+.++...|.+++++|.+.... ..+ +...-.|.+. +.+....+.+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR--TDDDGLATIRLTLE-----VRDLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE--ECCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 46789999999999999999999999987665 444 2222233332 123445666666654
No 133
>PRK04435 hypothetical protein; Provisional
Probab=96.01 E-value=0.07 Score=46.21 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=49.1
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
......|.+...|+||+|++|.++|+++|+||.........+|.+--.|.+...+ . ...++.|.+.|++
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~-~---~~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS-M---EGDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC-h---HHHHHHHHHHHHc
Confidence 3567899999999999999999999999999998876443456555456554421 1 1245555555554
No 134
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.92 E-value=0.063 Score=39.26 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=29.5
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
.+.+.+.|+||.|+++++.|.+++++|.+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~ 34 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF 34 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence 477899999999999999999999999976554
No 135
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.90 E-value=0.03 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=29.1
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
+.+.+.|+||+|.+++++|+++|+||.+....
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~ 33 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVG 33 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEe
Confidence 56789999999999999999999999986665
No 136
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.86 E-value=0.028 Score=42.70 Aligned_cols=62 Identities=10% Similarity=0.022 Sum_probs=42.8
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHH
Q 017424 301 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 366 (372)
Q Consensus 301 ~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~ 366 (372)
-+.-+|+||-|+++-..|++.|+|+.|=+- |... .+.|+ |.||+ |-+|..-.-+++++.+++
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeS-RP~~-~~~~~-y~Ffv-d~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIES-RPSR-RNGSE-YEFFV-DCEVDRGDLDQLISSLRR 65 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEEC-CCCC-CCCce-EEEEE-EEEcChHHHHHHHHHHHH
Confidence 344578999999999999999999977654 4332 33455 88999 777743222335555554
No 137
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.85 E-value=0.086 Score=39.74 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=43.1
Q ss_pred EEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 209 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 209 ~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
-+.-+|+||-|+++..+|+++|+|+.+ |.+... +....=.||++.+|.. ++...+.+.+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence 345589999999999999999999996 542222 2345567788865642 23455666666654
No 138
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.83 E-value=0.067 Score=41.04 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=44.7
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeee-cCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t-~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
..+++...|+||.|..++..|...|+||.+-.+.. | .++...=.+.+ . ++...+.|..+|.+.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~-t~~~~~sriti~v-~------~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ-NTDAQNINIELTV-A------SERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee-cCCCCEEEEEEEE-C------CCchHHHHHHHHhcCc
Confidence 56899999999999999999999999999855542 2 22211212222 1 3456788888887554
No 139
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.80 E-value=0.058 Score=36.24 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.8
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
|.+.+.|+||++.+++.+|.+.|++|......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~ 32 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR 32 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence 46889999999999999999999999986654
No 140
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.80 E-value=0.046 Score=41.24 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=43.6
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCC--CCChhhHHHHHHHH
Q 017424 301 ELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL--SVPRNKIEEGVWKL 367 (372)
Q Consensus 301 ~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~--~~~~~~~~~~vr~~ 367 (372)
-+.-+|+||-|++|..+|+++|+|+.|- -.|...+ ..| -|.||+ |-+|. +..-+.+++.+++.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I-~Srp~~~-~~~-~~~f~i-d~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKI-ESRPSRK-GLW-EYEFFV-DFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEE-EeeecCC-CCc-eEEEEE-EEECCCCCHHHHHHHHHHHHh
Confidence 3455799999999999999999999888 4454333 233 378888 66664 22234467777653
No 141
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.79 E-value=0.1 Score=38.71 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEEE
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFVT 118 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V~ 118 (372)
+.+.+..+|+||.|.+++++|+++|+||.+....-. .++...=+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 467888999999999999999999999998875433 234444445553
No 142
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.67 E-value=0.015 Score=42.79 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 117 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V 117 (372)
+.+.+.|+||+|++++.+|++.|+||......+. ++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~-~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR-GEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC-CCEEEEEEEc
Confidence 5678999999999999999999999988766433 3555444544
No 143
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.67 E-value=0.051 Score=40.28 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=32.9
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 253 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v 253 (372)
+-+...|+||.++++++.|+++|+||.+........++.+.-.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 3468899999999999999999999987655411133444444433
No 144
>PRK04435 hypothetical protein; Provisional
Probab=95.64 E-value=0.096 Score=45.37 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=49.8
Q ss_pred EeCCCCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChh-HHHHHHHHHH
Q 017424 197 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPS-KQNGLSSRLW 274 (372)
Q Consensus 197 i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~-~~~~l~~~L~ 274 (372)
|..........|.+...||||+|++|.++|++.|+||..-... .. ++.+.-.|-+.. .+.+ .+++|.++|+
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~--i~~~g~a~vs~tVev-----s~~~~~L~~Li~~L~ 133 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQS--IPLQGRANVTISIDT-----SSMEGDIDELLEKLR 133 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEE--cCCCCEEEEEEEEEe-----CChHHHHHHHHHHHH
Confidence 3445667789999999999999999999999999999964332 22 333444444432 2332 6777777765
No 145
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.64 E-value=0.042 Score=40.47 Aligned_cols=57 Identities=19% Similarity=0.346 Sum_probs=37.9
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHH
Q 017424 79 DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTI 140 (372)
Q Consensus 79 DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~ 140 (372)
|+||.|.+|+++|...|.||.+-.+..+.++...-+-.+...+ +...+.|.+.|++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~-----~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD-----DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES------CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC-----chhHHHHHHHHhcc
Confidence 7899999999999999999999999765544443333333322 22356676666653
No 146
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.55 E-value=0.018 Score=42.36 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.2
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEE
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF 251 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F 251 (372)
+-+.+.||||+|.+++.+|++.|+||.+.... +.++.+.-.|
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a~~~~ 43 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIGYVVI 43 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEEEEEE
Confidence 34678999999999999999999999875433 4344333333
No 147
>PRK07334 threonine dehydratase; Provisional
Probab=95.53 E-value=0.073 Score=53.72 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=48.7
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-----CCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-----GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-----g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
.+-|+|.+.||||+|.+|+.+|++.++||.+.... +. ++.+.-.|.+. +.+.++++.|...|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~--~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQ--RLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE--ecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999986655 33 23333334443 4467788888888863
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.41 E-value=0.12 Score=52.16 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee----CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT----PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~----~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+.|.|.+.||+|+|++|+.+|++.++||.+....+. .++.+.-.|.|.-. +.++++++.+.|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-----d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-----DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999998653 34554333444321 24556666666655
No 149
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.28 E-value=0.11 Score=56.30 Aligned_cols=64 Identities=17% Similarity=0.139 Sum_probs=49.5
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec--CCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~--g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
...-|.|.+.||+|||.+|+.+|++.++||....+. +. ++.+.-.|.+. +.+.++++.|...|+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~--~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~ 730 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR--SDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN 730 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 456899999999999999999999999999987665 43 34444455553 446778888888876
No 150
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.20 E-value=0.23 Score=37.09 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCC-CCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceE
Q 017424 23 ITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQA-PKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTI 98 (372)
Q Consensus 23 v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~-~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI 98 (372)
+.+..+|+||-+++++..|+++|.||.+.... ... ........+.+.+ +-++-+..|...|.+. ..+
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~-------~~~~~~~~~~~~v~v~~-e~~~~~~~i~~~L~~~-~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA-------FEDAPDGMRRVFIRVTP-MDRSKENELIEELKAK-FTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec-------cccCCCCccEEEEEEEE-ecchHHHHHHHHHhCc-ccE
Confidence 67789999999999999999999999975322 111 1233456677666 5566677888888655 443
No 151
>PRK06635 aspartate kinase; Reviewed
Probab=95.19 E-value=2.5 Score=42.47 Aligned_cols=108 Identities=21% Similarity=0.309 Sum_probs=66.8
Q ss_pred eEEEEEEe-CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424 70 VFLLKLSC-YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 148 (372)
Q Consensus 70 ~~~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~ 148 (372)
...|++.+ .++||.++++..+|.++|+||.........+|..-=.|.|. ++..++..+.|.+ +....
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~-~~~~~--- 329 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP--------RDDLEKALELLEE-VKDEI--- 329 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc--------HHHHHHHHHHHHH-HHHHc---
Confidence 34566654 67899999999999999999996544222211222234442 2222333333333 11100
Q ss_pred ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEE---CCcchHHHHHHHH
Q 017424 149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVC---QDHKGLLYDIMRT 225 (372)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~---~DRpGLL~~i~~~ 225 (372)
. ...|.+. .+..++++.+ .|+||.++++.++
T Consensus 330 -------------------~-----------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a~i~~~ 363 (404)
T PRK06635 330 -------------------G-----------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAAKMFEA 363 (404)
T ss_pred -------------------C-----------------------cceEEEc----CCeEEEEEECCCCCCCchHHHHHHHH
Confidence 0 0123222 2457888876 6899999999999
Q ss_pred HHhCCceEEE
Q 017424 226 LKDYNIQVSY 235 (372)
Q Consensus 226 L~~~~~~I~~ 235 (372)
|++.|+||..
T Consensus 364 La~~~Ini~~ 373 (404)
T PRK06635 364 LAEEGINIQM 373 (404)
T ss_pred HHHCCCCEEE
Confidence 9999999986
No 152
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.68 E-value=0.27 Score=37.22 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=35.3
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCC
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADG 257 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g 257 (372)
+-+..+|+||-|+++-..|+++|+|+.+ |.+.... ....=.|||+.+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence 4455589999999999999999999995 7622222 2234577888666
No 153
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.62 E-value=0.084 Score=38.87 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=37.7
Q ss_pred CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHh
Q 017424 214 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 214 DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
|+||.|..|+.+|...|+||.+-.+. .......-.+.+..+|. +...+.|..+|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~--~~~~~~~~riti~v~~~----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVG--PTEDPGISRITIVVSGD----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEE--E-SSTTEEEEEEEEES-----CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEee--ecCCCCEEEEEEEEeeC----chhHHHHHHHHhccC
Confidence 78999999999999999999987666 32222333343433332 235677888876544
No 154
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.35 E-value=0.11 Score=43.10 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=44.2
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHH
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 366 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~ 366 (372)
.+-+.-+|+||-|+++...|++.|+|+.|=+- |.. +...|+ |.||+ |-.|.+-+-+++++.+++
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IES-RP~-~~~~~e-Y~FfI-dieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLES-RPS-RKEGGD-LEVLV-RCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEC-CcC-CCCCce-EEEEE-EEEeCHHHHHHHHHHHHH
Confidence 44455589999999999999999999977654 322 234566 88888 666654222335566654
No 155
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.23 E-value=0.2 Score=45.86 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 254 (372)
Q Consensus 201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~ 254 (372)
..++...+-+.-.||||.+..|+.+|.++++||...++.....|+.+.-+.-++
T Consensus 144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 445667777888999999999999999999999998887544455555555554
No 156
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.18 E-value=0.048 Score=42.54 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=41.7
Q ss_pred EEEEEECC-cchHHHHHHHHHHhCCceEEEEEEeeeecCC-----------eEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 207 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-----------CEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~D-RpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~-----------~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
+|+|.|+| ++|+++.++++|+++|+||.. |. ...+ ...-.|.++ |.+. ..+.++++|.
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~--I~--~l~~~~~~~~~~~~~~~~~e~~v~--~~~~----~~~~lr~~L~ 70 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR--IR--RLSGRVPLEEQDDSPKACVEFSVR--GQPA----DLEALRAALL 70 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH--HH--HhhccccccccCCCCcEEEEEEEe--CCCC----CHHHHHHHHH
Confidence 47899999 999999999999999999974 44 2222 223344454 3332 3467888876
Q ss_pred HH
Q 017424 275 ME 276 (372)
Q Consensus 275 ~~ 276 (372)
+.
T Consensus 71 ~l 72 (84)
T cd04871 71 EL 72 (84)
T ss_pred HH
Confidence 33
No 157
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=94.15 E-value=0.33 Score=52.45 Aligned_cols=64 Identities=6% Similarity=0.095 Sum_probs=49.3
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
-.+.|.|.+.||+|+|.+|+.+|++.++||.+.... +.. ..+.-.|.+. +.+.++++.|...|+
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~--~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE--EKDGRVYSAFIRLT-----ARDRVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE--EcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 456899999999999999999999999999987765 443 3344445443 346678888888876
No 158
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.14 E-value=0.39 Score=45.93 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCeEEEEEEE------EEEEEeccC--CCCCC--ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE
Q 017424 44 FGLSIVRGASV------VLYYRAEMQ--APKPS--DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD 113 (372)
Q Consensus 44 ~~lnI~~a~i~------t~f~v~d~~--~~~~~--~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D 113 (372)
.||+|+.-.|- |.|+|.-+. ...++ ..|.+-+..+|+||-|+++-++|+.+|+|..+-...-+..+...=
T Consensus 158 YgL~il~~~I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y 237 (279)
T COG0077 158 YGLDILAENIEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEY 237 (279)
T ss_pred cCcHhHhhcccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeE
Confidence 55666655552 227776532 22222 467777888899999999999999999999887765555454455
Q ss_pred EEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 114 LFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 114 vF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+||| |-+|..-+ ..++++|++
T Consensus 238 ~F~i-D~eg~~~~----~~v~~AL~e 258 (279)
T COG0077 238 LFFI-DIEGHIDD----PLVKEALEE 258 (279)
T ss_pred EEEE-EEecCcCc----HhHHHHHHH
Confidence 6777 44555333 244455544
No 159
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.13 E-value=0.28 Score=53.07 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
...|.|.+.||+|||++|+.++++.++||.+..+.+.. ++.+.-.|.|.-. +.+.++++...|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-----~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-----NLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-----CHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999986543 4655444555321 24455666555554
No 160
>PRK06291 aspartate kinase; Provisional
Probab=93.89 E-value=4.7 Score=41.53 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=67.0
Q ss_pred eEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEE-EEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424 70 VFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDL-FFVTDTRELLHTRKRKEDTYEHLKTILGNAM 145 (372)
Q Consensus 70 ~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~Dv-F~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~ 145 (372)
...|++.+. +.+|+++++.++|.++|++|......+ .+ .++ |.|.. +..++..+.|.+.+....
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se--~sIsf~V~~--------~d~~~av~~L~~~~~~~~ 388 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SE--SNISLVVDE--------ADLEKALKALRREFGEGL 388 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CC--ceEEEEEeH--------HHHHHHHHHHHHHHHHhc
Confidence 457888764 789999999999999999998654322 22 222 44422 122233333443332100
Q ss_pred cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC---CcchHHHHH
Q 017424 146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ---DHKGLLYDI 222 (372)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~---DRpGLL~~i 222 (372)
...|.+. .+..+|.+.|. +++|++.++
T Consensus 389 ----------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~ri 418 (465)
T PRK06291 389 ----------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGRI 418 (465)
T ss_pred ----------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHHH
Confidence 0123332 24577888886 799999999
Q ss_pred HHHHHhCCceEEE
Q 017424 223 MRTLKDYNIQVSY 235 (372)
Q Consensus 223 ~~~L~~~~~~I~~ 235 (372)
..+|.+.|+||..
T Consensus 419 f~aL~~~~I~v~~ 431 (465)
T PRK06291 419 FSALGESGINIKM 431 (465)
T ss_pred HHHHHHCCCCEEE
Confidence 9999999999984
No 161
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.80 E-value=0.37 Score=52.07 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=47.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+.|.|.+.||+|+|++|+.+++..++||.+....+..++.+.-.|.+.-. +.++++.|...|++
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-----DRVHLANIMRKIRV 690 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 458899999999999999999999999999999866544554444544321 23455566555554
No 162
>PRK06635 aspartate kinase; Reviewed
Probab=93.75 E-value=1.9 Score=43.39 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=61.5
Q ss_pred CeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEE------E-E-EEEec-----------cC---CC-----CCCce
Q 017424 19 DPCVITVNC-PDKTGLGCDLCRIILFFGLSIVRGASV------V-L-YYRAE-----------MQ---AP-----KPSDV 70 (372)
Q Consensus 19 ~~~~v~v~~-~Dr~GL~~~i~~~l~~~~lnI~~a~i~------t-~-f~v~d-----------~~---~~-----~~~~~ 70 (372)
+...|++.+ .+++|.++++..+|.+.|.||.-...+ . . |.+.+ +. .. ...+.
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~i 340 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDI 340 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCe
Confidence 344566554 788999999999999999999865443 1 1 55532 10 11 13456
Q ss_pred EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEE
Q 017424 71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A 101 (372)
..+++.+ +++||.++++.++|++.|+||...
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 6789877 689999999999999999999864
No 163
>PRK11899 prephenate dehydratase; Provisional
Probab=93.73 E-value=0.8 Score=43.97 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCeEEEEEEE------EEEEEeccCC---CCC--CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEE
Q 017424 44 FGLSIVRGASV------VLYYRAEMQA---PKP--SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVM 112 (372)
Q Consensus 44 ~~lnI~~a~i~------t~f~v~d~~~---~~~--~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~ 112 (372)
.||.|+.-.|- |.|++.-+.. +.+ ..-+.+-+..+|+||.|+++-++|+.+|+|+.+-.-.-..++...
T Consensus 157 YgL~il~~~IqD~~~N~TRF~vi~~~~~~~~~~~~~~ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~ 236 (279)
T PRK11899 157 YGLDILAENIEDADHNTTRFVVLSREADWAARGDGPIVTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTA 236 (279)
T ss_pred cCCcchhhcccCCcccceeEEEEecCCCCCCCCCCCceEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCce
Confidence 46666666552 2266653221 111 224666666689999999999999999999998776555444334
Q ss_pred EEEEEEcCCCC
Q 017424 113 DLFFVTDTREL 123 (372)
Q Consensus 113 DvF~V~~~~g~ 123 (372)
=+||| |-+|.
T Consensus 237 Y~F~i-d~eg~ 246 (279)
T PRK11899 237 TQFYA-DIEGH 246 (279)
T ss_pred EEEEE-EEECC
Confidence 45777 43554
No 164
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.71 E-value=0.45 Score=51.32 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=48.6
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
..+-|.|.+.||+|+|.+|+.+|++.++||.+..+. +.. +.+.-.|-+ .+.+-+++..|...|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~--~~~~~~~~~~~~i-----eV~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTK--TYGKREAILNITV-----EIKNYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeE--EcCCCEEEEEEEE-----EECCHHHHHHHHHHHh
Confidence 466899999999999999999999999999987765 443 333333434 3446678888888775
No 165
>PLN02551 aspartokinase
Probab=93.57 E-value=2.4 Score=44.31 Aligned_cols=123 Identities=19% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHH---HHH
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WME 276 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L---~~~ 276 (372)
.+.++|+|.+. +.||.+..+...|.++|++|.. |+ +.. ..=.|.++. ..+.. .+.+++.+ ...
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--Is--sSe--~sIs~~v~~--~~~~~---~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VA--TSE--VSISLTLDP--SKLWS---RELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Ee--ccC--CEEEEEEeh--hHhhh---hhhHHHHHHHHHHH
Confidence 45688899876 6899999999999999999996 54 221 122355542 11211 12222222 223
Q ss_pred hcCCceEEEeecCCCcceeeeeeEEEEeC--CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCC
Q 017424 277 LLQPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 351 (372)
Q Consensus 277 l~~~~~v~i~~~g~~~~~~~~~~~~v~~~--DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~ 351 (372)
+.....+.+. .+ ...+.+.|. .+||++..+-.+|.+.|++|..-..+. - +++..++.+.+
T Consensus 433 l~~~~~V~v~-~~-------vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga-----S--einIS~vV~~~ 494 (521)
T PLN02551 433 LEKIAVVNLL-QG-------RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA-----S--KVNISLIVNDD 494 (521)
T ss_pred hhcCCeEEEe-CC-------EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC-----C--CcEEEEEEeHH
Confidence 3322222221 11 124555554 689999999999999999996555442 1 55665554433
No 166
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.53 E-value=0.42 Score=35.37 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=40.5
Q ss_pred EEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 209 QIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 209 ~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
.|.-+||||=|..+.++|.. |.||..-.-. ..+.....+++.- .+.+++..+++.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~i----e~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGI----QVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEE----EeCCHHHHHHHHHHHHH
Confidence 56779999999999999999 9999874443 2222233333221 22256778888888763
No 167
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.28 E-value=0.46 Score=50.90 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
....+-|.|.+.||+|||.+|+++|++.++||.+.... +..++...+.+ +. .+.+-.++..|..+|.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~-~i---~v~n~~~L~~i~~~l~ 690 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQF-TI---EVKNLNHLGRVLARLK 690 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEE-EE---EECcHHHHHHHHHHHh
Confidence 45677899999999999999999999999999975544 44333333322 21 3446667777777765
No 168
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=93.19 E-value=2 Score=43.16 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=62.1
Q ss_pred CeEEEEEE---cCCCCChHHHHHHHHHhCCCeEEEEEEEE----E-EEEec-----------cCC---C-----CCCceE
Q 017424 19 DPCVITVN---CPDKTGLGCDLCRIILFFGLSIVRGASVV----L-YYRAE-----------MQA---P-----KPSDVF 71 (372)
Q Consensus 19 ~~~~v~v~---~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t----~-f~v~d-----------~~~---~-----~~~~~~ 71 (372)
+...|+|. .++++|.++++...|.+++.||.--.... . |.+.+ +.+ . ...+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a 338 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLA 338 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeE
Confidence 45678888 47889999999999999999998554411 1 55532 011 1 234667
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHhCCceEEE
Q 017424 72 LLKLSCY---DRKGLLYDVTAVLCELELTIEK 100 (372)
Q Consensus 72 ~i~v~~~---DrpGLL~~I~~~L~~~glnI~~ 100 (372)
.|.+.+. ++||+++++..+|.+.|+||..
T Consensus 339 ~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 339 KVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred EEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 8889884 7899999999999999999984
No 169
>PRK11899 prephenate dehydratase; Provisional
Probab=93.12 E-value=0.6 Score=44.81 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=40.9
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCC
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKK 259 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~ 259 (372)
.|.|-+..+|+||.|+++-.+|++.|+|..+ |.....+ ....=.||++.+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence 5777777789999999999999999999995 7633333 334558899977754
No 170
>PRK06291 aspartate kinase; Provisional
Probab=92.96 E-value=3.6 Score=42.35 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=78.7
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEE-EEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID-LFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d-~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.+.++|++.+. +.||+++++..+|++.|++|.. ++ .+....+ .|.+.. +..+...+.|...+.
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Is---q~sse~sIsf~V~~--------~d~~~av~~L~~~~~ 385 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--IS---QGSSESNISLVVDE--------ADLEKALKALRREFG 385 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EE---ecCCCceEEEEEeH--------HHHHHHHHHHHHHHH
Confidence 34678888875 7899999999999999999985 43 2212222 334432 122333334443332
Q ss_pred C--CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCC
Q 017424 279 Q--PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL 353 (372)
Q Consensus 279 ~--~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~ 353 (372)
. ...+.+. .+ ...+.+.|. ++||+...+..+|.+.|++|..-..+. - +.+..++.+.+.
T Consensus 386 ~~~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs-----S--e~~Is~vV~~~d- 449 (465)
T PRK06291 386 EGLVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS-----S--EVNISFVVDEED- 449 (465)
T ss_pred HhcCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc-----c--cCeEEEEEeHHH-
Confidence 1 1111111 00 135777785 799999999999999999996444332 1 345544434322
Q ss_pred CCChhhHHHHHHHHH
Q 017424 354 SVPRNKIEEGVWKLL 368 (372)
Q Consensus 354 ~~~~~~~~~~vr~~~ 368 (372)
.+..+..+...+
T Consensus 450 ---~~~av~~Lh~~f 461 (465)
T PRK06291 450 ---GERAVKVLHDEF 461 (465)
T ss_pred ---HHHHHHHHHHHh
Confidence 233555555554
No 171
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.80 E-value=0.65 Score=50.14 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+.|.|.+.||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.-. +..++..+...|++
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-----~~~~L~~ii~~L~~ 674 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-----NYKHLLKIMLKIKT 674 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 458999999999999999999999999999999966544554433444321 23445555555443
No 172
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.76 E-value=0.98 Score=33.35 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=38.4
Q ss_pred EEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 74 KLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 74 ~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.|.-+||||=|.+++.+++. |.||..-+-.....+. ..++....-. +++..+++.+.|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~-~~v~v~ie~~----~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDE-ARVLVGIQVP----DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCc-eEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 56779999999999999999 9999987653221122 2333332211 24456666666654
No 173
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.64 E-value=0.59 Score=42.83 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 117 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V 117 (372)
.+....+-+.-.|+||.+.+|+.+|.++++||...++... .+|.++-+..|
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3445677777899999999999999999999999999654 35677655555
No 174
>PRK08210 aspartate kinase I; Reviewed
Probab=92.54 E-value=3.3 Score=41.64 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=61.0
Q ss_pred CeEEEEEEcCCC-CChHHHHHHHHHhCCCeEEEEEEEEE---EEEec----c--------CC--CCCCceEEEEEEeC--
Q 017424 19 DPCVITVNCPDK-TGLGCDLCRIILFFGLSIVRGASVVL---YYRAE----M--------QA--PKPSDVFLLKLSCY-- 78 (372)
Q Consensus 19 ~~~~v~v~~~Dr-~GL~~~i~~~l~~~~lnI~~a~i~t~---f~v~d----~--------~~--~~~~~~~~i~v~~~-- 78 (372)
+...|+|.+.+. +|.++++...|.++|.||.-...+.. |.+.+ + .+ ....+...|.|.+.
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~ 349 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGM 349 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCc
Confidence 456777777555 99999999999999999986533221 44432 0 11 11346678888884
Q ss_pred -CCCcHHHHHHHHHHhCCceEEE
Q 017424 79 -DRKGLLYDVTAVLCELELTIEK 100 (372)
Q Consensus 79 -DrpGLL~~I~~~L~~~glnI~~ 100 (372)
++||+++++..+|++.|+||..
T Consensus 350 ~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 350 AGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCCccHHHHHHHHHHhCCCCEEE
Confidence 7999999999999999999974
No 175
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=92.48 E-value=3 Score=41.86 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=65.0
Q ss_pred CeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC-
Q 017424 204 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ- 279 (372)
Q Consensus 204 ~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~- 279 (372)
+...|.|.+ .++||++.++..+|.+.+++|.. ++ +......=.|.+. .+..+++.+.|......
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~--~~~s~~~Is~~V~--------~~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--IS--QTPSETSISLTVD--------ETDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EE--cCCCCceEEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence 467788884 58899999999999999999985 43 2111111134443 12234444444443311
Q ss_pred C-ceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEE
Q 017424 280 P-LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS 327 (372)
Q Consensus 280 ~-~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~ 327 (372)
. ..+.+ .++ ...+.+.|. ++||++..+..+|.+.|+||..
T Consensus 327 ~~~~i~~-~~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 327 GLDRVEV-EEG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCceEEE-eCC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 11111 111 135667774 7899999999999999999974
No 176
>PRK08210 aspartate kinase I; Reviewed
Probab=92.25 E-value=3 Score=42.01 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCeeEEEEEECCc-chHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCc
Q 017424 203 PGHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 281 (372)
Q Consensus 203 ~~~tvi~v~~~DR-pGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~ 281 (372)
.+-..|+|.+.+. ||.+.+|..+|++.|+||.. ++. ... .=.|++. .+..+++.+.|.+ +. .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~--~~~--~is~~v~--------~~~~~~a~~~l~~-~~--~ 331 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INI--FPT--EVVFTVS--------DEDSEKAKEILEN-LG--L 331 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEe--cCc--eEEEEEc--------HHHHHHHHHHHHH-hC--C
Confidence 3456778877665 99999999999999999996 331 111 1134443 1233444444443 11 1
Q ss_pred eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEE
Q 017424 282 RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS 327 (372)
Q Consensus 282 ~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~ 327 (372)
.+.+ ..+ ...+.+.|. ++||++..+..+|.+.|++|..
T Consensus 332 ~v~~-~~~-------~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 KPSV-REN-------CAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred cEEE-eCC-------cEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 1221 111 125667775 7999999999999999999975
No 177
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.14 E-value=0.5 Score=41.52 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=35.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGK 110 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~ 110 (372)
-+.+.+.++||.|.+++++++++|.||..|+.+.-.+|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~ 42 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE 42 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc
Confidence 477889999999999999999999999999998776663
No 178
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=91.84 E-value=0.098 Score=40.80 Aligned_cols=62 Identities=19% Similarity=0.147 Sum_probs=42.4
Q ss_pred EEEEEeCC-CCcHHHHHHHHHHhCCceEEEEEEEee--------CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 72 LLKLSCYD-RKGLLYDVTAVLCELELTIEKVKISTT--------PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 72 ~i~v~~~D-rpGLL~~I~~~L~~~glnI~~A~I~T~--------~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+|++.|.| +.|++++++++|+++|+||.+-+-.+. ......-.|.|..+. . ..+.+++.|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~---~---~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP---A---DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC---C---CHHHHHHHHHH
Confidence 47899999 999999999999999999976553210 001334456665322 2 24677777776
No 179
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=91.70 E-value=0.7 Score=40.60 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=37.0
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCC
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADG 257 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g 257 (372)
-+.+.+.++||.|.+++-.++++|.||.++.-....+|. ....|...+|
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~--~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGE--KALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCc--eEEEEEEeeC
Confidence 367889999999999999999999999998876333333 3445655333
No 180
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.65 E-value=1.4 Score=33.51 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=33.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424 73 LKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118 (372)
Q Consensus 73 i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~ 118 (372)
+-+..+|+||-|+++-..|..+|+|+.+-.-....+....=.|||.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id 48 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVD 48 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEE
Confidence 3445589999999999999999999998776544333333446664
No 181
>PLN02551 aspartokinase
Probab=91.51 E-value=15 Score=38.54 Aligned_cols=108 Identities=15% Similarity=0.279 Sum_probs=66.2
Q ss_pred ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424 69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM 145 (372)
Q Consensus 69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~ 145 (372)
+.+.|+|.+. +.+|.++++...|.++|++|.--. ++ +.. =.|.+...+ . + ..+.+++.+.+.+.. .
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS--e~s-Is~~v~~~~---~-~-~~~~i~~~l~~l~~e-l 433 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS--EVS-ISLTLDPSK---L-W-SRELIQQELDHLVEE-L 433 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc--CCE-EEEEEehhH---h-h-hhhhHHHHHHHHHHH-h
Confidence 3567888765 689999999999999999998662 32 211 125553321 0 0 122233333332211 0
Q ss_pred cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEEC--CcchHHHHHH
Q 017424 146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQ--DHKGLLYDIM 223 (372)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~--DRpGLL~~i~ 223 (372)
. + ...|.+. .+..+|.|.|. .+||++..+.
T Consensus 434 ----------------------~----~------------------~~~V~v~----~~vAiISvVG~~~~~~gvaariF 465 (521)
T PLN02551 434 ----------------------E----K------------------IAVVNLL----QGRSIISLIGNVQRSSLILEKVF 465 (521)
T ss_pred ----------------------h----c------------------CCeEEEe----CCEEEEEEEccCCCCccHHHHHH
Confidence 0 0 0123332 24567777764 6899999999
Q ss_pred HHHHhCCceEEE
Q 017424 224 RTLKDYNIQVSY 235 (372)
Q Consensus 224 ~~L~~~~~~I~~ 235 (372)
.+|.+.|+||..
T Consensus 466 ~aLa~~gInV~m 477 (521)
T PLN02551 466 RVLRTNGVNVQM 477 (521)
T ss_pred HHHHHCCCCeEE
Confidence 999999999984
No 182
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.17 E-value=0.92 Score=33.39 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCeeEEEEEEC----CcchHHHHHHHHHHhCCceEEE
Q 017424 203 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 203 ~~~tvi~v~~~----DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
.+...|+|.+. |.||+++.++..|++.|++|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~ 40 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM 40 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE
Confidence 35678888888 8999999999999999999996
No 183
>PRK06382 threonine dehydratase; Provisional
Probab=91.12 E-value=1.6 Score=44.04 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=47.4
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE----eeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS----TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~----T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
....+.++|.-+|+||-|.+++.+|.++|+||.+.... ....+...-+|.|... +++..++|.+.|++
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999877653 2233455555666432 23334466666554
No 184
>PRK09034 aspartate kinase; Reviewed
Probab=90.59 E-value=15 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=27.6
Q ss_pred CeeEEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424 204 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 204 ~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
+..+|.+.|. ++||++.++..+|.+.|+||..
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~m 418 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQM 418 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 4577888654 7899999999999999999985
No 185
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.62 E-value=1 Score=45.69 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=40.2
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 254 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~ 254 (372)
....|-+.-.|+||.+..|+.+|+++|+||..-+.. +.|+.+.-+|-++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D 385 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVD 385 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeC
Confidence 456677789999999999999999999999886776 7777666666554
No 186
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=89.58 E-value=1.8 Score=46.48 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEE
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMD 113 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~D 113 (372)
.+.|.|.+.||+|||.+|+++|+..+.||.+....+. ++....
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~ 669 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFAT 669 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEE
Confidence 4689999999999999999999999999999998665 344333
No 187
>PRK09181 aspartate kinase; Validated
Probab=89.56 E-value=15 Score=38.01 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=63.8
Q ss_pred ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccc
Q 017424 69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAM 145 (372)
Q Consensus 69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~ 145 (372)
+.+.|+|.+. +.+|+++++.++|.++|++|. .+.+... --.|.|.+. ..+.+++.+.|++.+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~---sis~~v~~~------~~~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN---TITHYLWGS------LKTLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc---EEEEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence 4556777554 789999999999999999998 3333221 123555331 11223333333321110
Q ss_pred cccccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECC--cchHHHHHH
Q 017424 146 ISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQD--HKGLLYDIM 223 (372)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~D--RpGLL~~i~ 223 (372)
..|.. .+..+|.+.|.. +||+...+.
T Consensus 395 -----------------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~f 422 (475)
T PRK09181 395 -----------------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKAV 422 (475)
T ss_pred -----------------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHHH
Confidence 01211 245677777754 899999999
Q ss_pred HHHHhCCceEEE
Q 017424 224 RTLKDYNIQVSY 235 (372)
Q Consensus 224 ~~L~~~~~~I~~ 235 (372)
.+|.+.|+||..
T Consensus 423 ~aL~~~~Ini~~ 434 (475)
T PRK09181 423 QALAEAGINVLA 434 (475)
T ss_pred HHHHHCCCCeEE
Confidence 999999999984
No 188
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.43 E-value=2.5 Score=32.75 Aligned_cols=61 Identities=7% Similarity=0.032 Sum_probs=37.9
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCC-hhHHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD-PSKQNGLSSRLWM 275 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~-~~~~~~l~~~L~~ 275 (372)
++.+.-+||||=|..++.+|. +.||....-.. ...+.+.-.+.+.. .+ ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSV-----ANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence 577888999999999999999 55555333321 11123333333442 24 5677788877753
No 189
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=89.27 E-value=19 Score=36.91 Aligned_cols=107 Identities=22% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+.+.|.|.+. +.+|.+.+|...|.++|+||.. |. +.-....=.|++.. .......+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~--q~~~~~~i~~~v~~--------~~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--IT--QSISEVSISFTVPE--------SDAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EE--eccCCCeEEEEEch--------hhHHHHHHHHHHHHhh
Confidence 56788888876 3459999999999999999985 54 22222223455531 1222233333333332
Q ss_pred Cc-eEEEeecCCCcceeeeeeEEEEe---CCCCchHHHHHHHHHhCCeEEEEEE
Q 017424 280 PL-RVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAE 329 (372)
Q Consensus 280 ~~-~v~i~~~g~~~~~~~~~~~~v~~---~DRpgll~dvt~~L~~~~~~V~~a~ 329 (372)
.. .+.+. .+ ...+.+.| +..||+..-+..+|.+.|+||....
T Consensus 373 ~~~~v~~~-~~-------~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 373 LLAEVEVE-EG-------LALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred hcceEEee-CC-------eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 21 12211 11 12566777 4789999999999999999996555
No 190
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.90 E-value=0.9 Score=45.99 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=40.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 117 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V 117 (372)
....|.+.-.|+||.++.|+.+|+++|+||...+.++ .++.++-+|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEe
Confidence 4567888999999999999999999999999999855 45778655544
No 191
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.88 E-value=4.6 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.265 Sum_probs=24.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 72 LLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 72 ~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
++.|.-+||||=|++++.+|+ +.||....-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence 567788999999999999999 666664433
No 192
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.78 E-value=2.7 Score=34.78 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=35.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~ 118 (372)
-+.+-+..+|+||-|+++-..|+.+|+|+.+-......+....=.|+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfId 89 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVR 89 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEE
Confidence 4566666699999999999999999999998775443323222235553
No 193
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.58 E-value=7.4 Score=43.06 Aligned_cols=112 Identities=16% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEE-EEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID-LFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d-~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.+.++|+|.+. ++||++.++..+|.+.|++|.. ++ .+....+ .|.+.. ..+ ....+.|.+.+...+.
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Is---qssSe~sIsf~V~~--~d~--~~av~~L~~~f~~el~ 383 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--IT---QSSSEYSISFCVPQ--SDA--AKAKRALEEEFALELK 383 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EE---cCCCCceEEEEEeH--HHH--HHHHHHHHHHHHHHhc
Confidence 46788999875 6899999999999999999985 33 1211122 344432 010 1112333333322222
Q ss_pred C-Cc-eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424 279 Q-PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEIG 331 (372)
Q Consensus 279 ~-~~-~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i~ 331 (372)
. .. .+.+. .+ ...+.+.|. ++||+...+..+|.+.|++|..-..+
T Consensus 384 ~~~~~~i~~~-~~-------valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg 433 (819)
T PRK09436 384 EGLLEPLEVE-EN-------LAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG 433 (819)
T ss_pred cCCcceEEEe-CC-------EEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 1 11 12211 11 135777775 78999999999999999999655443
No 194
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=87.96 E-value=2 Score=37.72 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=47.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
-.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+.+...-=+-.|+.. ++...+++.+.|.+..+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence 46777889999999999999999999999998866554432222222221 23456778777777543
No 195
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=87.94 E-value=3.2 Score=39.73 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=47.6
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 276 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~ 276 (372)
..|.|-+..+|+||-|+++-.+|+.+|+|..+ |.+...+ ....=.|||+.+|..= + ..++++|.+.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~~Y~F~iD~eg~~~-~----~~v~~AL~el 259 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLGEYLFFIDIEGHID-D----PLVKEALEEL 259 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCeeEEEEEEEecCcC-c----HhHHHHHHHH
Confidence 57888888889999999999999999999994 6632222 3356688998766652 2 3455555433
No 196
>PRK09181 aspartate kinase; Validated
Probab=87.72 E-value=32 Score=35.59 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=68.4
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+.+.|+|.+. +.+|++.++..+|.+.+++|.. +. +. . ..-.|.+..+ ..+.+++.+.|...+..
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~--ss-~-~sis~~v~~~------~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KA--TN-A-NTITHYLWGS------LKTLKRVIAELEKRYPN 394 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EE--ec-C-cEEEEEEcCC------hHHHHHHHHHHHHhcCC
Confidence 35778888755 7899999999999999999984 54 21 1 2223444321 12345555555544431
Q ss_pred CceEEEeecCCCcceeeeeeEEEEeCC--CCchHHHHHHHHHhCCeEEEEEEE
Q 017424 280 PLRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEI 330 (372)
Q Consensus 280 ~~~v~i~~~g~~~~~~~~~~~~v~~~D--Rpgll~dvt~~L~~~~~~V~~a~i 330 (372)
..+. ..+. ..+.+.|.+ +||+...+..+|.+.|+||..-.-
T Consensus 395 -~~i~--~~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 395 -AEVT--VRKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred -ceEE--ECCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 1222 1221 256677754 899999999999999999954333
No 197
>PRK06382 threonine dehydratase; Provisional
Probab=87.67 E-value=3.3 Score=41.86 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEee---eecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR---RQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~---~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+...+.++|.-+||||-|.++++.|.++|+||.+-.... ....+...=.|.++. . +++..+.|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet--~---~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV--R---GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe--C---CHHHHHHHHHHHHH
Confidence 445788999999999999999999999999998643310 011122333344431 1 34555677777753
No 198
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=87.34 E-value=4.4 Score=40.77 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=39.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCC
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL 123 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~ 123 (372)
-+.+-+..+|+||.|+++-+.|+..|+|+.+-.-.-..++...=+|||. -+|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid-~eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLD-VQAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEE-EeCC
Confidence 4555566689999999999999999999998776544444344457774 3554
No 199
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.33 E-value=17 Score=37.10 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=61.1
Q ss_pred CeEEEEEEcCCC--CChHHHHHHHHHhCCCeEEEEEEEE----E-EEEecc--------------CC-----CCCCceEE
Q 017424 19 DPCVITVNCPDK--TGLGCDLCRIILFFGLSIVRGASVV----L-YYRAEM--------------QA-----PKPSDVFL 72 (372)
Q Consensus 19 ~~~~v~v~~~Dr--~GL~~~i~~~l~~~~lnI~~a~i~t----~-f~v~d~--------------~~-----~~~~~~~~ 72 (372)
+...|+|.+.+- +|.++++.+.|.++|++|.-....+ . |.+.+. .. ....+...
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~ 380 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAK 380 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEE
Confidence 556777777443 6999999999999999997654322 1 444320 01 12346778
Q ss_pred EEEEe---CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424 73 LKLSC---YDRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 73 i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
|++.+ .++||+++++.++|++.|+||....
T Consensus 381 VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 381 VSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred EEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 99976 4789999999999999999997654
No 200
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.84 E-value=5.7 Score=39.56 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE---ee-CCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS---TT-PDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~---T~-~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
+.....+.|.-+||||.|++++..++++|.||.+-.-. .. ..+.+.-.+.+... +++..+.|.+.|++
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999987542 11 23444333444221 13445566666554
No 201
>PRK09084 aspartate kinase III; Validated
Probab=86.78 E-value=16 Score=37.44 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+-++|+|.+. +.+|.+.++..+|.+.|++|.. |+ +. + ..=.|.+..+ .. .......+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~--ss-e-~sIs~~i~~~--~~-~~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--IT--TS-E-VSVSLTLDTT--GS-TSTGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Ee--cc-C-cEEEEEEech--hh-hhhhhHHHHHHHHHHHhc
Confidence 45678899865 6899999999999999999995 54 21 1 2224455421 11 011112233344444443
Q ss_pred CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEE
Q 017424 280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 325 (372)
Q Consensus 280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V 325 (372)
...+.+. .+ ...+.+.|. ++||+...+..+|.+.++.+
T Consensus 375 ~~~i~~~-~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 375 LCRVEVE-EG-------LALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred CCeEEEE-CC-------eEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 2222221 11 135778886 79999999999998865544
No 202
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.54 E-value=1.2 Score=41.76 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=33.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 105 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T 105 (372)
...-+|.+.-.|.||.+++|+++|+..|.||.+--+--
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 34568888999999999999999999999999988843
No 203
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=86.53 E-value=3.7 Score=40.91 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=54.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEE
Q 017424 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE 99 (372)
Q Consensus 20 ~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~ 99 (372)
...+.|.-+|+||.|++++..++++|.||++-..... .+..+.......+.+.+.| +.-+.+|...|.+.|.++.
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~----~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~~G~~v~ 379 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRL----SKEIPPGFAMVEITLETRG-KEHLDEILKILRDMGYNFY 379 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeecc----ccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHHcCCccc
Confidence 3488999999999999999999999999997432100 0011122234566667777 7778899999999998763
No 204
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.50 E-value=4.2 Score=40.86 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=40.6
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCC
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKK 259 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~ 259 (372)
..|.+-+..+|+||.|+++-..|+..|+|..+ |.+... +....=.||++.+|..
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~~ 350 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQANL 350 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCCC
Confidence 35666677789999999999999999999995 763322 2335557899877754
No 205
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=86.42 E-value=1.2 Score=46.52 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=43.7
Q ss_pred CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHH
Q 017424 203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLS 270 (372)
Q Consensus 203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~ 270 (372)
++++++=+.-.||||.+..|+..|.++++||...++.....|+.+.-.+.++. ++ +++-+++|+
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~---~v-~~~~l~~i~ 512 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ---PV-PDEVLEEIK 512 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC---CC-CHHHHHHHh
Confidence 44555566679999999999999999999999877764444555554454432 44 344444444
No 206
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.17 E-value=1.8 Score=45.36 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=37.6
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEE
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 253 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v 253 (372)
.+.++.+=+...|+||.+..++..|.+.++||...++.....|+.+.-++-+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3455555667799999999999999999999998777632234444444444
No 207
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=85.73 E-value=17 Score=40.34 Aligned_cols=86 Identities=10% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEE-----EEEec-----------cCC----C--------C
Q 017424 18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVVL-----YYRAE-----------MQA----P--------K 66 (372)
Q Consensus 18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-----f~v~d-----------~~~----~--------~ 66 (372)
.+...|+|.+. +++|+.+++...|.++|.||.-....+. |.+.+ +.| . .
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~ 392 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEV 392 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEE
Confidence 35677888764 7899999999999999999965443221 55542 011 1 1
Q ss_pred CCceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 67 PSDVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 67 ~~~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..+...|.+.|. ++||+++++..+|.+.|+||..-..
T Consensus 393 ~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 393 EENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred eCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 246778999985 7899999999999999999986654
No 208
>PRK11898 prephenate dehydratase; Provisional
Probab=85.59 E-value=10 Score=36.46 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=47.2
Q ss_pred hCCCeEEEEEEE------EEEEEeccCC-----CCCCceEEEEEEeC-CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCe
Q 017424 43 FFGLSIVRGASV------VLYYRAEMQA-----PKPSDVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGK 110 (372)
Q Consensus 43 ~~~lnI~~a~i~------t~f~v~d~~~-----~~~~~~~~i~v~~~-DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~ 110 (372)
..||.|+.-.|- |.|++.-+.. +....-+.+-+.-+ |+||-|+++-+.|+++|+|+.+-...-..+..
T Consensus 158 ~ygL~il~~~I~d~~~N~TRF~vi~~~~~~~~~~~~~~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~ 237 (283)
T PRK11898 158 LYGLEILAEDIQDYPNNRTRFWLLGRKKPPPPLRTGGDKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGL 237 (283)
T ss_pred HcCCcEehhcCCCCCccceEEEEEEcCcccCCCCCCCCeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCC
Confidence 346666665553 2266653221 11223344555554 46999999999999999999987754333332
Q ss_pred EEEEEEEEcCCCC
Q 017424 111 VMDLFFVTDTREL 123 (372)
Q Consensus 111 ~~DvF~V~~~~g~ 123 (372)
..=.|||. -+|.
T Consensus 238 ~~y~F~vd-~eg~ 249 (283)
T PRK11898 238 GTYFFFID-VEGH 249 (283)
T ss_pred ccEEEEEE-EEcc
Confidence 22346663 3454
No 209
>PRK09034 aspartate kinase; Reviewed
Probab=85.48 E-value=11 Score=38.71 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=66.7
Q ss_pred CCeeEEEEEE---CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+-+.|++.+ .++||+++++..+|+++|++|.. ++ + +. ..=.|++.. ..+ +...+..+.+.|...+.
T Consensus 306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~--s-s~-~sis~~v~~--~~~-~~a~~~~l~~el~~~~~- 375 (454)
T PRK09034 306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP--S-GI-DDLSIIIRE--RQL-TPKKEDEILAEIKQELN- 375 (454)
T ss_pred CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec--C-CC-cEEEEEEeH--HHh-hHHHHHHHHHHHHHhhC-
Confidence 3457888875 67899999999999999999996 33 1 11 222455542 011 11111334444433322
Q ss_pred CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEEE
Q 017424 280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAEI 330 (372)
Q Consensus 280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~i 330 (372)
...+.+. .+ ...+.+.|. ++||++..+..+|.+.|++|..-..
T Consensus 376 ~~~I~~~-~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 376 PDELEIE-HD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred CceEEEe-CC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 1111111 11 135777664 7899999999999999999965543
No 210
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=85.11 E-value=1 Score=33.15 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.2
Q ss_pred CceEEEEEEeC----CCCcHHHHHHHHHHhCCceEEEEE
Q 017424 68 SDVFLLKLSCY----DRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 68 ~~~~~i~v~~~----DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
.+...|+|.++ |.||+++++++.|++.|+||....
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 34567888887 799999999999999999998655
No 211
>PRK08198 threonine dehydratase; Provisional
Probab=84.93 E-value=9 Score=38.54 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 104 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~ 104 (372)
......+.|.-+|+||-|+++...++++|.||.+-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34567899999999999999999999999999988764
No 212
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=84.63 E-value=10 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=25.4
Q ss_pred EEEE-eCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 73 LKLS-CYDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 73 i~v~-~~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
|++. .+|+||.++++.+.|++.|++|.....
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 4444 379999999999999999999985544
No 213
>PRK08198 threonine dehydratase; Provisional
Probab=83.79 E-value=8 Score=38.90 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCce
Q 017424 18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELT 97 (372)
Q Consensus 18 ~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~gln 97 (372)
+....+.|.-+|+||-|++++..++..|.||.+-..... ....+.......|.+.+.|.. -+.++...|.+.|+.
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~----~~~~~~~~~~v~v~ie~~~~~-~~~~l~~~L~~~G~~ 399 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRF----SPDLRLGEVEVELTLETRGPE-HIEEILDALRDAGYE 399 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEc----cCCCCCceEEEEEEEEeCCHH-HHHHHHHHHHHCCCe
Confidence 344689999999999999999999999999998543310 000111123345666665443 678899999999998
Q ss_pred EEE
Q 017424 98 IEK 100 (372)
Q Consensus 98 I~~ 100 (372)
+..
T Consensus 400 v~~ 402 (404)
T PRK08198 400 VKV 402 (404)
T ss_pred EEE
Confidence 763
No 214
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.78 E-value=1.7 Score=43.03 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=35.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT 106 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~ 106 (372)
+..+.+.|.-+||||-+++++..|.+.|+||.+-+|.-.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~ 326 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEA 326 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeec
Confidence 467899999999999999999999999999999999544
No 215
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.75 E-value=5.1 Score=40.74 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=39.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEc
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTD 119 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~ 119 (372)
..+.|.+...|+||.|++|++.|.++++||.+...... ++....++.+++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEE
Confidence 45789999999999999999999999999998766433 233445667765
No 216
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=83.59 E-value=31 Score=35.15 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=62.7
Q ss_pred CCeeEEEEEECCc--chHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc-C
Q 017424 203 PGHTLVQIVCQDH--KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-Q 279 (372)
Q Consensus 203 ~~~tvi~v~~~DR--pGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~-~ 279 (372)
.+...|+|.+.+- +|++.++..+|.++|++|.. +...+ .+ ..=.|.+.. +..+...+.|..... .
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~~-se-~sIs~~I~~--------~~~~~a~~~L~~~~~~~ 367 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQSS-SE-TSISFTVDK--------EDADQAKTLLKSELNLS 367 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecC-CC-ceEEEEEEH--------HHHHHHHHHHHHHHHhc
Confidence 3567788876543 79999999999999999985 32111 11 111333432 122223333322221 1
Q ss_pred Cc-eEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEEEE
Q 017424 280 PL-RVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE 329 (372)
Q Consensus 280 ~~-~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~a~ 329 (372)
.. .+.+ ..+ ...+.+.|. ++||++.++..+|++.|++|..-.
T Consensus 368 ~~~~I~~-~~~-------~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 ALSSVEV-EKG-------LAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CcceEEE-cCC-------eEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 11 1111 111 135777664 789999999999999999995443
No 217
>PRK12483 threonine dehydratase; Reviewed
Probab=83.55 E-value=30 Score=36.24 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=85.7
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHH-HHHHHHHHHHhcCC
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQ-NGLSSRLWMELLQP 280 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~-~~l~~~L~~~l~~~ 280 (372)
+.....+.|.-+||||-|.+++++|... ||.+..-. ..+.+...++..- .+.+++.. ++|.++|.+ .+
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~--~~~~~~~~v~v~i----e~~~~~~~~~~i~~~l~~---~g 410 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYR--YADAREAHLFVGV----QTHPRHDPRAQLLASLRA---QG 410 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEE--ecCCCeeEEEEEE----EeCChhhhHHHHHHHHHH---CC
Confidence 4466788999999999999999999988 77653333 2233334444321 12244454 677777753 22
Q ss_pred ceEEEeec-------------CCCcceeeeeeEEEEeCCCCchHHHHHHHHHh-CCeEEEEEEEeeeccCceeeeEEEEE
Q 017424 281 LRVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAEIGRHMIGDREWEVYRVL 346 (372)
Q Consensus 281 ~~v~i~~~-------------g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~-~~~~V~~a~i~~~~~~~~~~~~~~f~ 346 (372)
..+...+. |-.+.......+.+.=++|||=|.....+|-. .+++-||=... |+. .-|.|+
T Consensus 411 ~~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~----~~~--~a~v~v 484 (521)
T PRK12483 411 FPVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH----GAA--DGRVLA 484 (521)
T ss_pred CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC----CCC--ceEEEE
Confidence 32222111 11111122346778889999999999999987 58888775442 122 346665
Q ss_pred EeCCCCCCCChhhHHHHHHH
Q 017424 347 LDEGDGLSVPRNKIEEGVWK 366 (372)
Q Consensus 347 ~~~~~g~~~~~~~~~~~vr~ 366 (372)
=.+..+ =+++++.+.++.
T Consensus 485 gi~~~~--~~~~~~~~~l~~ 502 (521)
T PRK12483 485 GLQVPE--DERAALDAALAA 502 (521)
T ss_pred EEeeCh--hHHHHHHHHHHH
Confidence 444422 114445555543
No 218
>PRK08818 prephenate dehydrogenase; Provisional
Probab=82.62 E-value=3.6 Score=41.17 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred ceEEEEEEeC-CCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEE
Q 017424 69 DVFLLKLSCY-DRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVT 118 (372)
Q Consensus 69 ~~~~i~v~~~-DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~ 118 (372)
..+.+.+.-+ |+||-|++|..+|+.+|+||.+-.+ .....+-.- |+|.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~-f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELH-FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEE-EEEE
Confidence 4667777776 9999999999999999999999988 333344333 7764
No 219
>PRK06349 homoserine dehydrogenase; Provisional
Probab=81.84 E-value=6 Score=40.28 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=43.4
Q ss_pred CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
...+.|.+...|+||.|.+|+..|.+++++|.+-.-. ...+....+++++. +. ++.+++++.+.|.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~--~~~~~~~~ivivT~---~~-~e~~l~~~i~~L~ 411 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQK--GAGGEGAEIVIVTH---ET-SEAALRAALAAIE 411 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec--cCCCCceeEEEEEE---eC-CHHHHHHHHHHHh
Confidence 3457899999999999999999999999999964332 21223344555552 22 2344455555543
No 220
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.68 E-value=8.3 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=24.1
Q ss_pred eCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 77 CYDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 77 ~~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
.+|.+|.++++.+.|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 378899999999999999999987655
No 221
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.64 E-value=12 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.4
Q ss_pred ECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 212 CQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 212 ~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
..++||++++|..+|++.|+||.. |+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDm--I~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDL--IT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEE--Ee
Confidence 368899999999999999999996 65
No 222
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.62 E-value=3.5 Score=43.13 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=38.8
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEee-CCCeEEEEEEE
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTT-PDGKVMDLFFV 117 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~-~~~~~~DvF~V 117 (372)
.++...+-+.-.|+||.+..++..|.++++||...++... .++.++-++.+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3445566667799999999999999999999999988533 34566555544
No 223
>PLN02317 arogenate dehydratase
Probab=81.59 E-value=16 Score=36.69 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIST 105 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T 105 (372)
-+.|-+.-+|+||-|+++-.+|+.+|+|+.+-.-.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP 318 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRP 318 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence 366666668999999999999999999999877543
No 224
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.56 E-value=15 Score=27.69 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=36.0
Q ss_pred CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 213 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 213 ~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
.+.||+++++..+|++.|+||.. |. + +. ..=.|.+..+...+.+ +.+++|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDm--I~--~-s~-~~isftv~~~~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDL--VS--T-SE-TNVTVSLDPDPNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EE--e-CC-CEEEEEEeCcccccch-HHHHHHHHHHHh
Confidence 57899999999999999999996 65 3 22 2223334322211322 356777777764
No 225
>PRK09224 threonine dehydratase; Reviewed
Probab=81.25 E-value=41 Score=35.06 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhH-HHHHHHHHHHHhcCC
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK-QNGLSSRLWMELLQP 280 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~-~~~l~~~L~~~l~~~ 280 (372)
+.....+.|.-+||||=|.++.++|. +-||..-+-. ..+.....+|+.- .+.+++. .+.|.+.|.+ .+
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr--~~~~~~a~V~vgi----e~~~~~~~~~~i~~~L~~---~g 393 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYR--YADAKEAHIFVGV----QLSRGQEERAEIIAQLRA---HG 393 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEE--ecCCCeEEEEEEE----EeCChhhHHHHHHHHHHH---cC
Confidence 34567899999999999999999999 5777754333 2333344455421 1223333 6788888754 22
Q ss_pred ceEEEeec-------------CCCcceeeeeeEEEEeCCCCchHHHHHHHHH-hCCeEEEE
Q 017424 281 LRVTVVSR-------------GPDTELLVANPVELSGKGRPLVFHDITLALK-MLDICIFS 327 (372)
Q Consensus 281 ~~v~i~~~-------------g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~-~~~~~V~~ 327 (372)
..+...+. |-.+...-...+.+.=++|||=|.+-..+|. +-+|+-||
T Consensus 394 y~~~~ls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~~~~~It~f~ 454 (504)
T PRK09224 394 YPVVDLSDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLGTHWNISLFH 454 (504)
T ss_pred CCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcCCCCeeEEEE
Confidence 22222111 1111111223577788999999999888885 24444443
No 226
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=81.13 E-value=6.4 Score=40.31 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=40.1
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEE--EEEEEecCCCC
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI--DLFIMQADGKK 259 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~--d~F~v~~~g~~ 259 (372)
....|.|-+.-.|+||-|+++-++|+++|+|+.+ |.+........ =.|||+.+|..
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEEEEEcCH
Confidence 3445666677799999999999999999999995 76322222222 47888865543
No 227
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=81.06 E-value=21 Score=26.71 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.6
Q ss_pred eEEEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
+.|++.+ .+.||++.++..+|++.|+++..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 3455543 57899999999999999999985
No 228
>PLN02317 arogenate dehydratase
Probab=81.05 E-value=9.8 Score=38.15 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=39.2
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCe---------------EEEEEEEecCCCC
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC---------------EIDLFIMQADGKK 259 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~---------------~~d~F~v~~~g~~ 259 (372)
.|.|-+.-.|+||-|+++-.+|+..|+|+.+ |.+.....+ ..=.|||+.+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtk--IESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTK--IESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEE--EEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence 4777777789999999999999999999995 763222222 2337899866654
No 229
>PRK08818 prephenate dehydrogenase; Provisional
Probab=80.74 E-value=6.8 Score=39.18 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=35.9
Q ss_pred CeeEEEEEEC-CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEec
Q 017424 204 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQA 255 (372)
Q Consensus 204 ~~tvi~v~~~-DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~ 255 (372)
..+.|.+.-+ |+||-|+++..+|++.|+||.+ |.+ .......-.||++.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~--Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSS--IHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccce--EEE-ecccCceEEEEEEE
Confidence 4666777776 9999999999999999999996 442 22222233388874
No 230
>PRK09084 aspartate kinase III; Validated
Probab=80.49 E-value=73 Score=32.67 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=28.4
Q ss_pred ceEEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEE
Q 017424 69 DVFLLKLSCY---DRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 69 ~~~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
+...|+|.+. +.+|.++++..+|.++|+||.--.
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 4557888754 689999999999999999998664
No 231
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=80.15 E-value=19 Score=25.85 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=25.4
Q ss_pred EEEEEEeC---CCCcHHHHHHHHHHhCCceEE
Q 017424 71 FLLKLSCY---DRKGLLYDVTAVLCELELTIE 99 (372)
Q Consensus 71 ~~i~v~~~---DrpGLL~~I~~~L~~~glnI~ 99 (372)
..|.+.|. +.||+++++..+|.+.|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35777775 789999999999999999996
No 232
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=79.77 E-value=47 Score=34.62 Aligned_cols=116 Identities=12% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCc
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL 281 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~ 281 (372)
+.....+.|.-+||||-|.++.++|.. -||...+-. ..+.....+|+.- .+.+++++++|.+.|.+. +.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr--~~~~~~a~v~vgi----e~~~~~~~~~l~~~L~~~---Gy 390 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYR--YADRKDAHIFVGV----QLSNPQERQEILARLNDG---GY 390 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEE--ecCCCeEEEEEEE----EeCCHHHHHHHHHHHHHc---CC
Confidence 346788999999999999999999998 466654333 2233334455421 233567888888887642 22
Q ss_pred eEEEee-------------cCCCcceeeeeeEEEEeCCCCchHHHHHHHH-HhCCeEEEEE
Q 017424 282 RVTVVS-------------RGPDTELLVANPVELSGKGRPLVFHDITLAL-KMLDICIFSA 328 (372)
Q Consensus 282 ~v~i~~-------------~g~~~~~~~~~~~~v~~~DRpgll~dvt~~L-~~~~~~V~~a 328 (372)
.+...+ -|-.+...-...+.+.=+.|||-|.+-..+| -+-+|+-||=
T Consensus 391 ~~~dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~~~~It~f~Y 451 (499)
T TIGR01124 391 SVVDLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQGYWNISLFHY 451 (499)
T ss_pred CeEECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCCCCceeeEEE
Confidence 222111 1111111112357777899999999887777 4455666553
No 233
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=79.55 E-value=35 Score=37.84 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=65.3
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+-++|++.+. +.||.+.++..+|.++|++|.. ++. ..+...-.|.++. ...+.+.+.|.+. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~--i~~--~~s~~sis~~i~~--------~~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLA--VGV--HPDRQLLQLAYTS--------EVADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEE--EEe--cCCCcEEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence 45678888876 8899999999999999999985 431 1222222233321 1234444444332 11
Q ss_pred CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEEEE
Q 017424 280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS 327 (372)
Q Consensus 280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V~~ 327 (372)
..++.+. .+ ...+.+.|. .+||+...+..+|.+.|+++..
T Consensus 382 ~~~i~v~-~~-------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 382 PGELKLR-EG-------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred CCcEEEe-CC-------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 1122211 11 135778884 6899999999999999999843
No 234
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=78.98 E-value=4.1 Score=41.71 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=46.8
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHH
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK 366 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~ 366 (372)
.+=++-+++||-|+++-.+|+++|+|+.|=+= |... .+.|+.|.||| |-.|..-.-+++++.+++
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLThIES-RPsk-~~~~e~Y~FfV-D~Eg~~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILHLES-RDSK-DGTSKTMDVLV-DVELFHYGLQEAMDLLKS 97 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEEEEC-CcCC-CCCCccEEEEE-EEEcCHHHHHHHHHHHHH
Confidence 45555588999999999999999999988665 3232 34577789999 666655333446666665
No 235
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=78.84 E-value=8.9 Score=39.05 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=45.7
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeec-CCeEEEEEEEecCCCCCCChhHHHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR-GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME 276 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~-g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~ 276 (372)
.|.|-+..+|+||-|+++-.+|+++|+|+.+ |.+... +....=.|||+.+|.. + ...+++.+.|...
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~~ 83 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQK 83 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCccEEEEEEEecCc--c-HHHHHHHHHHHHh
Confidence 4667777799999999999999999999995 762211 1223347889866654 2 3445555555543
No 236
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.73 E-value=3.8 Score=35.82 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=27.6
Q ss_pred EEEEEe--CCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 72 LLKLSC--YDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 72 ~i~v~~--~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
+|+++. .+.||+++.+++.++++||+|..+-.
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 555554 77899999999999999999998875
No 237
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.72 E-value=4.1 Score=42.68 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=38.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC-CCeEEEEEEE
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP-DGKVMDLFFV 117 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~-~~~~~DvF~V 117 (372)
++...+-+.-.|+||.+..++..|.++++||...++.... ++.++-++.+
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~ 499 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL 499 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc
Confidence 4445566677999999999999999999999988875432 4567555554
No 238
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=78.40 E-value=1.5e+02 Score=35.23 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=55.9
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeecc-CceeeeEEEEEEeCCCCCCCC----hhhHHHHHHHHHhcc
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMI-GDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW 371 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~-~~~~~~~~~f~~~~~~g~~~~----~~~~~~~vr~~~~~~ 371 (372)
.+.+....+|..|+||.-+|..||+.|....-..-.. +....-+|.|++.-+.|..++ ++.+.+.+.+...|+
T Consensus 491 ~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 491 RLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred EEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCC
Confidence 6888889999999999999999999997664432222 334568999999888887655 455677777776664
No 239
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.32 E-value=4 Score=35.67 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEE
Q 017424 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRG 51 (372)
Q Consensus 19 ~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a 51 (372)
+.++|..-..+.||+++.+++.++++|++|.++
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi 126 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQI 126 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEE
Confidence 444555555788999999999999999999963
No 240
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.28 E-value=22 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.4
Q ss_pred EEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|.+.|. ++||+++++.++|++.|+++.....
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 35677774 7899999999999999999986654
No 241
>PRK06545 prephenate dehydrogenase; Validated
Probab=77.67 E-value=3.3 Score=41.08 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=34.2
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE
Q 017424 18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASV 54 (372)
Q Consensus 18 ~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~ 54 (372)
.....|.|.-+|+||-++++++.|...|+||.+-+|.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 4568999999999999999999999999999998875
No 242
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=77.45 E-value=23 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=25.4
Q ss_pred eEEEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
.+|.+.| .+.||+++++.++|++.|++|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~ 34 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRA 34 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 3566666 48899999999999999999985
No 243
>PRK11898 prephenate dehydratase; Provisional
Probab=77.18 E-value=16 Score=35.08 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred CeeEEEEEECC-cchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 204 GHTLVQIVCQD-HKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~D-RpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
..|.|-+.-.+ +||-|+++-..|+++|+|+.+ |.+.... ....=.||++.+|.. .++ ..+++.+.|.
T Consensus 195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~~y~F~vd~eg~~-~~~-~~~~al~~L~ 263 (283)
T PRK11898 195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLGTYFFFIDVEGHI-DDV-LVAEALKELE 263 (283)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCccEEEEEEEEccC-CCH-HHHHHHHHHH
Confidence 34666666654 699999999999999999995 7632221 223447888876754 333 3444444443
No 244
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.11 E-value=22 Score=25.25 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=25.5
Q ss_pred eEEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
.+|.+.|. ++||++.++..+|.+.|+++..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~ 34 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEM 34 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEE
Confidence 35666665 7899999999999999999985
No 245
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=77.00 E-value=9.1 Score=33.67 Aligned_cols=67 Identities=9% Similarity=0.120 Sum_probs=45.5
Q ss_pred eEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 206 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 206 tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
-++.+.-.|.||.|..++..|+..|+||.+-.+.. |+.....-+-.+ ..| |+...+++..+|...+.
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~-tE~~~~SRiTiv-v~g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP-TETPGLSRITIV-VSG----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEe-cCCCCceEEEEE-EcC----CcchHHHHHHHHHhhcc
Confidence 45677778999999999999999999999855542 222221111122 222 44567889999887775
No 246
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.61 E-value=28 Score=26.20 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=38.5
Q ss_pred EEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 72 LLKLSC---YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 72 ~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.|++.+ ++.||+++++.++|+++|+||.--- + . + .-=.|.|..... -++++..++|.+.|++
T Consensus 3 ~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~--~-s-~-~~isftv~~~~~-~~~~~~~~~l~~el~~ 67 (75)
T cd04935 3 LVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVS--T-S-E-TNVTVSLDPDPN-GLDPDVLDALLDDLNQ 67 (75)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEE--e-C-C-CEEEEEEeCccc-ccchHHHHHHHHHHHh
Confidence 444443 5789999999999999999998653 2 2 2 112355544321 1233355666666665
No 247
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.29 E-value=24 Score=24.90 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=27.3
Q ss_pred EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|++.| ++.||+++++.++|.+.|+++..-..
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3567776 48899999999999999999986543
No 248
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.10 E-value=27 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=26.1
Q ss_pred EEEEE--E-eCCCCcHHHHHHHHHHhCCceEEEE
Q 017424 71 FLLKL--S-CYDRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 71 ~~i~v--~-~~DrpGLL~~I~~~L~~~glnI~~A 101 (372)
+.|+| . .+++||++++|..+|+++|+||.--
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 45666 3 4788999999999999999999865
No 249
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=75.91 E-value=22 Score=27.50 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=49.7
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.+.+.+.+.++|+.|..+-++..-.|+.|-.-.++....++.+.-.|.|.. .+ ..+-|..+|.++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s-~R------~~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS-DR------SVDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC-CC------ChHHHHHHHHHHcc
Confidence 467899999999999999999999999998877764334666666666642 12 23567777776654
No 250
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=75.60 E-value=86 Score=32.25 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=61.2
Q ss_pred CCeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEE--E--E-EEEec-----------cCC-------CCCCceE
Q 017424 18 GDPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASV--V--L-YYRAE-----------MQA-------PKPSDVF 71 (372)
Q Consensus 18 ~~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~--t--~-f~v~d-----------~~~-------~~~~~~~ 71 (372)
.+...|++.++ .++|..+++.+.|.++|+||.---.. . . |.+.. ..+ ....+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a 384 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLA 384 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCee
Confidence 45667777763 34599999999999999999543222 1 1 55543 001 1234566
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHhCCceEEEEE
Q 017424 72 LLKLSCY---DRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 72 ~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
.|.+.+. ..||..+++.++|++.|+||....
T Consensus 385 ~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 385 LVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred EEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 8888874 678999999999999999999766
No 251
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=73.59 E-value=63 Score=36.08 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=63.9
Q ss_pred CCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcC
Q 017424 203 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ 279 (372)
Q Consensus 203 ~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~ 279 (372)
.+-++|+|.+. +.+|.+.+|...|++++++|.. |+ +.. ..=.|.+.... .....+.++.+...|. .
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~--sse--~sis~~i~~~~-~~~~~~~~~~l~~~l~----~ 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--IS--SSE--TNVTVSLDPSE-NLVNTDVLAALSADLS----Q 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EE--cCC--CEEEEEEcccc-ccchHHHHHHHHHHHh----h
Confidence 45678888654 6899999999999999999985 54 322 11123443211 1101223344444433 2
Q ss_pred CceEEEeecCCCcceeeeeeEEEEeC---CCCchHHHHHHHHHhCCeEE
Q 017424 280 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI 325 (372)
Q Consensus 280 ~~~v~i~~~g~~~~~~~~~~~~v~~~---DRpgll~dvt~~L~~~~~~V 325 (372)
...+.+. .+ ...+.+.|. .+||++..+..+|.+.|+++
T Consensus 389 ~~~i~~~-~~-------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 ICRVKII-VP-------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred cCcEEEe-CC-------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1122221 11 135788885 88999999999999988766
No 252
>PRK12483 threonine dehydratase; Reviewed
Probab=72.92 E-value=1.1e+02 Score=32.08 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=57.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEE-------EEE---ec--------------------------
Q 017424 18 GDPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVL-------YYR---AE-------------------------- 61 (372)
Q Consensus 18 ~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-------f~v---~d-------------------------- 61 (372)
+....+.|.-|||||-|.+++.+|... ||.+-.-... +.. .+
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne 420 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE 420 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence 345678889999999999999999988 8886555321 111 00
Q ss_pred ------c-----CCCCCCceEEEEEEeCCCCcHHHHHHHHHHh-CCceEEEEEE
Q 017424 62 ------M-----QAPKPSDVFLLKLSCYDRKGLLYDVTAVLCE-LELTIEKVKI 103 (372)
Q Consensus 62 ------~-----~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~-~glnI~~A~I 103 (372)
+ ..+...+--.+.|.-|.|||=|.+.++.|.. .+++--+=+.
T Consensus 421 ~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~ 474 (521)
T PRK12483 421 LAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRN 474 (521)
T ss_pred HHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecC
Confidence 0 0111234557888889999999999999996 3555544443
No 253
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=72.67 E-value=7.6 Score=38.73 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=45.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCChhhHHHHHHHHHhc
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG 370 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~~~ 370 (372)
.++|.|.||-||..|+-..|-..++++-..||. -+++.|+.-++ ++ ..+.+.++.+|.+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid---------~~~~IYln~p~---l~-~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID---------PIGRIYLNFPE---LE-FESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec---------CCCeEEEeccc---cC-HHHHHHHHHHHhc
Confidence 479999999999999999999999999888884 34667784444 22 2366777777664
No 254
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=72.14 E-value=6 Score=37.18 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.5
Q ss_pred CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCChhHHHHHHHHHHHHh
Q 017424 204 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~~~~~~l~~~L~~~l 277 (372)
..-+|.+.-.|-||.|..|+-+|+..|+||.+--+. ..++.+.|..+ .-|. +.-.++.+++|....
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc----~tevk~LsrmTIVl~Gt----d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVC----LTEVKALSRMTIVLQGT----DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeee----chhhhhhhhceEEEecc----HHHHHHHHHHHHHhh
Confidence 456888999999999999999999999999985554 24566677332 1121 234455555655443
No 255
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=71.53 E-value=31 Score=24.29 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 213 QDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 213 ~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
.++||+..++.++|.+.|+++.. ++
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~--i~ 35 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL--IP 35 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE--Ee
Confidence 47899999999999999999996 55
No 256
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=71.23 E-value=40 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=25.5
Q ss_pred EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEE
Q 017424 71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A 101 (372)
+.|++.+ .+.+|+++++.++|+++|+++..-
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 4566743 678999999999999999999644
No 257
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=70.20 E-value=34 Score=29.13 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=40.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEE
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFV 117 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V 117 (372)
.+.+.+.+.-.||.|.|+++-.++++.++||..-.-.---+|++--...+
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 45678888999999999999999999999999887744346776444444
No 258
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=70.18 E-value=36 Score=25.52 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=34.0
Q ss_pred CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 214 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 214 DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
-.||+++++..+|++.|+||.. |. + +. +-+-+......+.+ +.+++|.+.|..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~--I~--~-s~---~~isftv~~~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDL--IS--T-SE---VHVSMALHMENAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEE--EE--e-CC---CEEEEEEehhhcCh-HHHHHHHHHHHH
Confidence 4699999999999999999996 65 3 22 33433311123322 256677777654
No 259
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=69.50 E-value=31 Score=23.12 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=24.3
Q ss_pred EEEEEECC---cchHHHHHHHHHHhCCceEEE
Q 017424 207 LVQIVCQD---HKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 207 vi~v~~~D---RpGLL~~i~~~L~~~~~~I~~ 235 (372)
+|++.+.+ .+|.+.++.++|.+.+++|..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~ 33 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDM 33 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 45555554 899999999999999999986
No 260
>PRK08526 threonine dehydratase; Provisional
Probab=69.32 E-value=26 Score=35.44 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecC-CeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g-~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
......+.+.-+||||-|.+++..+.+.+.||.+-.-...... ........+.. ...+++..++|.+.|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~---e~~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITL---ETKGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEE---EeCCHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999986443211111 10111212221 22367788888888753
No 261
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=69.10 E-value=8.9 Score=40.07 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=30.6
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEe
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG 331 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~ 331 (372)
.++|.|.||.|+.+||...|...++++..-||.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 489999999999999999999999999887875
No 262
>PRK08841 aspartate kinase; Validated
Probab=68.75 E-value=1e+02 Score=31.00 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=67.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEE---EEEEecc-------C----CCCCCceEEEEEEeCCCCcHH
Q 017424 19 DPCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVV---LYYRAEM-------Q----APKPSDVFLLKLSCYDRKGLL 84 (372)
Q Consensus 19 ~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t---~f~v~d~-------~----~~~~~~~~~i~v~~~DrpGLL 84 (372)
+...|++.+ +..+++.+.|..+|+++.--.... .|.+.+. . .....+...|.+.|...||+.
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~~gv~ 332 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVIEEADRAQIVIKQDACAKLKLVFDDKIRNSESVSLLTLVGLEANGMV 332 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEEecCCcEEEEECHHHHHHHHHhCcccEEEeCCEEEEEEECCCChHHH
Confidence 345566643 357899999999998887432111 1444321 1 112356788999999999999
Q ss_pred HHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 85 YDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 85 ~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
+++..+|.+.|+||..-. + ++ ..+..|.+ ++..++.-+.|.+.+.
T Consensus 333 ~~~~~aL~~~~I~i~~i~--~--s~--~~is~vv~-------~~~~~~av~~lH~~f~ 377 (392)
T PRK08841 333 EHACNLLAQNGIDVRQCS--T--EP--QSSMLVLD-------PANVDRAANILHKTYV 377 (392)
T ss_pred HHHHHHHHhCCCCEEEEE--C--CC--cEEEEEEe-------HHHHHHHHHHHHHHHc
Confidence 999999999999995433 2 23 33333433 3334455555666553
No 263
>PRK08526 threonine dehydratase; Provisional
Probab=66.47 E-value=45 Score=33.69 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC----CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD----GKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~----~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
......+.+.-+||||-|.+++..+.+.+.||.+..-..... +.+ .++...... +++..++|.+.|++
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~-~~~~~~e~~----~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDA-MISITLETK----GKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccE-EEEEEEEeC----CHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999876532211 222 222222211 35566677666654
No 264
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=66.39 E-value=59 Score=25.16 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=46.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCC-CeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHc
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPD-GKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILG 142 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~-~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~ 142 (372)
.+.+.+...++|+.|.++-++....|..+.....++-.+ |.+---|.| +.+- ..+.|...|+++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s~R------~~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DSDR------SVDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cCCC------ChHHHHHHHHHHcc
Confidence 478899999999999999999999999999888754433 333222333 3221 23677777777543
No 265
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.81 E-value=44 Score=23.47 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=27.3
Q ss_pred EEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|.+.|. +.+|+++++.+.|++.|++|.-...
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 35677774 7899999999999999999986654
No 266
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=65.28 E-value=11 Score=27.26 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.1
Q ss_pred EEEE-cCCCCChHHHHHHHHHhCCCeEE
Q 017424 23 ITVN-CPDKTGLGCDLCRIILFFGLSIV 49 (372)
Q Consensus 23 v~v~-~~Dr~GL~~~i~~~l~~~~lnI~ 49 (372)
|++. .+|++|.++++.+.|+++|.||.
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~ 31 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVD 31 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEE
Confidence 4444 38999999999999999999997
No 267
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.19 E-value=11 Score=25.92 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEE
Q 017424 27 CPDKTGLGCDLCRIILFFGLSIVRG 51 (372)
Q Consensus 27 ~~Dr~GL~~~i~~~l~~~~lnI~~a 51 (372)
.+|.+|.++++.+.|.++|.+|.-.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i 32 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMI 32 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEE
Confidence 4889999999999999999999753
No 268
>PLN02550 threonine dehydratase
Probab=64.74 E-value=1.4e+02 Score=31.81 Aligned_cols=116 Identities=11% Similarity=0.113 Sum_probs=71.7
Q ss_pred CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCce
Q 017424 203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 282 (372)
Q Consensus 203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 282 (372)
.....+.+.-+||||-|.+++.+|... ||.+..-. ........+++ .. .+.+++..++|.++|.+. +.+
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~--~~~~~~~~v~v-~i---e~~~~~~~~~i~~~l~~~---g~~ 483 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYR--YSSEKEALVLY-SV---GVHTEQELQALKKRMESA---QLR 483 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEE--ecCCCceEEEE-EE---EeCCHHHHHHHHHHHHHC---CCC
Confidence 345778899999999999999999987 77653332 11111222332 21 223677888888888642 221
Q ss_pred EE-Eeec-----------CCCcceeeeeeEEEEeCCCCchHHHHHHHHHh-CCeEEEEEE
Q 017424 283 VT-VVSR-----------GPDTELLVANPVELSGKGRPLVFHDITLALKM-LDICIFSAE 329 (372)
Q Consensus 283 v~-i~~~-----------g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~-~~~~V~~a~ 329 (372)
.. +.+. |--.++.....+.+.=.+|||-|.....+|.. -+|+-||=.
T Consensus 484 ~~~l~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR 543 (591)
T PLN02550 484 TVNLTSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR 543 (591)
T ss_pred eEeCCCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee
Confidence 11 1110 01112222345777889999999999999976 488887754
No 269
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=64.51 E-value=18 Score=36.87 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=46.6
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC-hhhHHHHHHHHH
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKLL 368 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~-~~~~~~~vr~~~ 368 (372)
.+-++-+|+||-|+++-.+|++.|+|+.|=+- |.+. .+.|+ |.||+ |-+|.+-. -+++++.+++..
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIES-RPsk-~~~~e-Y~FFV-D~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIES-RPSK-THPGE-YEFFV-EFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEec-ccCC-CCCcc-EEEEE-EEecCccHHHHHHHHHHHHhc
Confidence 44455589999999999999999999987665 3333 23455 78999 76675411 345777777643
No 270
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=64.42 E-value=50 Score=23.63 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred eEEEEEEC---CcchHHHHHHHHHHhCCceEE
Q 017424 206 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 234 (372)
Q Consensus 206 tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~ 234 (372)
..|.+.|. ++||++.++..+|.+.|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35666665 899999999999999999997
No 271
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.16 E-value=52 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEEEEEC--CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEE-EEEe
Q 017424 207 LVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL-FIMQ 254 (372)
Q Consensus 207 vi~v~~~--DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~-F~v~ 254 (372)
+|.+.|. ..+|++.++..+|.+.|++|.. + ++|.....+ |.++
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~--i---~~g~s~~sis~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQM--I---SQGASKVNISLIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEE--E---EecCccceEEEEEe
Confidence 4455554 4689999999999999999984 3 345555555 4554
No 272
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=63.97 E-value=22 Score=37.17 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=29.8
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
++|.|.||.|+..+|...|...++|+..-.|.
T Consensus 3 l~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~ 34 (520)
T PRK10820 3 LEVFCEDRLGLTRELLDLLVLRSIDLRGIEID 34 (520)
T ss_pred EEEEeeccccHHHHHHHHHHhcCCCccEEEEc
Confidence 78999999999999999999999999986665
No 273
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=63.41 E-value=37 Score=25.21 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.8
Q ss_pred eEEEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~---~DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
+.|++.+ .+++|+++++.++|++.++++..
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~ 34 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVIL 34 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 3566643 37899999999999999999985
No 274
>PRK08841 aspartate kinase; Validated
Probab=62.45 E-value=1.4e+02 Score=30.01 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=57.7
Q ss_pred CCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCce
Q 017424 203 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 282 (372)
Q Consensus 203 ~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 282 (372)
.+.+.|++.+ +.+..+...|.++|+++.. +. +... .-.|++. ....++++.. ....+
T Consensus 256 ~~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~--~~~~--~~~~~v~--------~~~~~~~~~~----~~~~i- 312 (392)
T PRK08841 256 RDLALIEVES----ESLPSLTKQCQMLGIEVWN--VI--EEAD--RAQIVIK--------QDACAKLKLV----FDDKI- 312 (392)
T ss_pred CCeEEEEecc----chHHHHHHHHHHcCCCEEE--EE--ecCC--cEEEEEC--------HHHHHHHHHh----CcccE-
Confidence 3466777754 3578999999999999985 43 2221 1134443 1223333221 11111
Q ss_pred EEEeecCCCcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEE
Q 017424 283 VTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIF 326 (372)
Q Consensus 283 v~i~~~g~~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~ 326 (372)
.+. .+ ...+.+.|...||+...+..+|.+.|++|.
T Consensus 313 -~~~-~~-------~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 313 -RNS-ES-------VSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred -EEe-CC-------EEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 111 11 136888999999999999999999999993
No 275
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=62.22 E-value=17 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.215 Sum_probs=26.1
Q ss_pred EEEEEeCC---CCcHHHHHHHHHHhCCceEEEEEE
Q 017424 72 LLKLSCYD---RKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 72 ~i~v~~~D---rpGLL~~I~~~L~~~glnI~~A~I 103 (372)
.|++.+.+ .+|.++++.++|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45666655 899999999999999999976553
No 276
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.07 E-value=55 Score=22.99 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=27.5
Q ss_pred EEEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|.+.|. ++||+++++.+.|++.|+++.-...
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 35677774 7899999999999999999986654
No 277
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.78 E-value=51 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.4
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 72 LLKLSCY---DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 72 ~i~v~~~---DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
.|++.+. +++|+++++.+.|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4667554 8899999999999999999976544
No 278
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=58.56 E-value=2.3e+02 Score=31.59 Aligned_cols=83 Identities=13% Similarity=-0.003 Sum_probs=59.5
Q ss_pred CeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEEE-----EEEec-----------cC-CC----CCCceEEEE
Q 017424 19 DPCVITVNCP---DKTGLGCDLCRIILFFGLSIVRGASVVL-----YYRAE-----------MQ-AP----KPSDVFLLK 74 (372)
Q Consensus 19 ~~~~v~v~~~---Dr~GL~~~i~~~l~~~~lnI~~a~i~t~-----f~v~d-----------~~-~~----~~~~~~~i~ 74 (372)
+...|++.+. +.+|..+++...|.++|.+|.--...+. |.+.. .. +. ...+...|.
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~Vs 395 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVA 395 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEE
Confidence 4567777765 7788899999999999999875432211 33321 00 11 134677899
Q ss_pred EEeC---CCCcHHHHHHHHHHhCCceEEEE
Q 017424 75 LSCY---DRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 75 v~~~---DrpGLL~~I~~~L~~~glnI~~A 101 (372)
++|. .++|+.+++..+|.+.|+++..-
T Consensus 396 vVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 396 LVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred EeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 9984 68999999999999999999543
No 279
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=55.53 E-value=3.4e+02 Score=30.37 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=27.1
Q ss_pred ceEEEEEEe---CCCCcHHHHHHHHHHhCCceEEEE
Q 017424 69 DVFLLKLSC---YDRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 69 ~~~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A 101 (372)
+.+.|++.+ .+.+|++++|.+.|.++|+||.--
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 355777754 468999999999999999999754
No 280
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=55.52 E-value=1.3e+02 Score=25.65 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=46.0
Q ss_pred CCCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 201 LSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 201 ~~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
....-..+.+.-.||.|.|+++-.++++.++||..-.=++ ...++|.-...++..+ -+...+.|.+.|.
T Consensus 68 ~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ss----m~~~V~~ii~kl~ 136 (150)
T COG4492 68 LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSS----MEKDVDKIIEKLR 136 (150)
T ss_pred ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchh----hhhhHHHHHHHHh
Confidence 3344567788899999999999999999999998532221 2335565555554221 1334567777765
No 281
>PRK08639 threonine dehydratase; Validated
Probab=55.32 E-value=68 Score=32.51 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.6
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
......+.+.-+||||-|.+++..+...+.||..-+-
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~ 369 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEY 369 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 3456789999999999999999977777779987654
No 282
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=55.29 E-value=72 Score=32.26 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=44.4
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEE-EEecCCCCCCChhHHHHHHHHHHH
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F-~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+.....+.+.-+||||=|.++...+...+-||.+-+-.. ..+.....++ -+. +.+++..+++.+.|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~~~~v~v~iE-----~~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRETGPALIGIE-----LNDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 456788999999999999999997777777998644321 1122222232 233 2246677888888753
No 283
>PRK09224 threonine dehydratase; Reviewed
Probab=55.14 E-value=2.7e+02 Score=29.06 Aligned_cols=157 Identities=11% Similarity=0.134 Sum_probs=83.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcccccc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMIS 147 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~ 147 (372)
.....+.|.-|||||-|.+++..|. +.||..-+-.-...+. ..+|....-.+. +...++|.+.|++. . .
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~-a~V~vgie~~~~---~~~~~~i~~~L~~~-g--y-- 394 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKE-AHIFVGVQLSRG---QEERAEIIAQLRAH-G--Y-- 394 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCe-EEEEEEEEeCCh---hhHHHHHHHHHHHc-C--C--
Confidence 3456888899999999999999999 6788766543222222 334444332211 12256777776551 1 1
Q ss_pred cccccccceeeccccCCCCC-hhhHH-hhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHH
Q 017424 148 CDVEMVGTEITACSQASSFL-PSAII-DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRT 225 (372)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~r~~-~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~ 225 (372)
.... .+.. ..+.| +.+ .....+ ...+--++.+.-+.|||-|-+...+
T Consensus 395 --------~~~~----ls~ne~~k~h~r~~------------~g~~~~-------~~~~e~~~~~~fPerpGal~~Fl~~ 443 (504)
T PRK09224 395 --------PVVD----LSDDELAKLHVRYM------------VGGRPP-------KPLDERLYRFEFPERPGALLKFLST 443 (504)
T ss_pred --------CeEE----CCCCHHHHHHHHhc------------cCCCCC-------CCCceEEEEEeCCCCCCHHHHHHHh
Confidence 0100 0000 11222 221 000011 1123467889999999999988886
Q ss_pred HHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 226 LKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 226 L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
|. -+-||..-+-. .+|...-.++. |-.+.++ ..+.+.++|.
T Consensus 444 l~-~~~~It~f~Yr--~~~~~~g~vlv----gi~~~~~-~~~~~~~~l~ 484 (504)
T PRK09224 444 LG-THWNISLFHYR--NHGADYGRVLA----GFQVPDA-DEPEFEAFLD 484 (504)
T ss_pred cC-CCCeeEEEEEc--cCCcccccEEE----EEecChh-hHHHHHHHHH
Confidence 66 55677654443 33432222332 1122223 4567777764
No 284
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.20 E-value=79 Score=22.70 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=26.8
Q ss_pred EEEEEeC--CCCcHHHHHHHHHHhCCceEEEEEEEe
Q 017424 72 LLKLSCY--DRKGLLYDVTAVLCELELTIEKVKIST 105 (372)
Q Consensus 72 ~i~v~~~--DrpGLL~~I~~~L~~~glnI~~A~I~T 105 (372)
.|.+.|. ..+|+++++.++|.+.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 468999999999999999998666533
No 285
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=54.16 E-value=1.2e+02 Score=30.66 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE-eeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 67 PSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS-TTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 67 ~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~-T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
......+.+.-+||||-|.+++..+...+.||..-+-. ...-+.+ .++....-. +++..+++.+.|++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~-~v~v~iE~~----~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETG-PALIGIELN----DKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeE-EEEEEEEeC----CHHHHHHHHHHHHH
Confidence 34567899999999999999999777787799966543 1111222 222222211 24555667666655
No 286
>PRK08639 threonine dehydratase; Validated
Probab=53.41 E-value=74 Score=32.24 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCCeeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHH
Q 017424 202 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM 275 (372)
Q Consensus 202 ~~~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~ 275 (372)
+.....+.+.-+||||-|.++...+...+-||..-+-.. ..+.....++ +.. .+.++++.+++.+.|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~-~~~~~~~~v~-v~i---E~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLK-KNNRETGPVL-VGI---ELKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEee-cCCCCceEEE-EEE---EeCCHHHHHHHHHHHHH
Confidence 456788999999999999999996666655998643221 1122222222 221 22356677888888763
No 287
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=52.97 E-value=84 Score=26.27 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred CCCeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 202 SPGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 202 ~~~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
++....+.+.++ |-+|+|..|.+.|++.|+-|+- ++
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vS 98 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VS 98 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE--EE
Confidence 456788888877 9999999999999999999995 66
No 288
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=51.50 E-value=1.6e+02 Score=25.84 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=53.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEE
Q 017424 20 PCVITVNCPDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIE 99 (372)
Q Consensus 20 ~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~ 99 (372)
-+.+-|--+|+||-+..+-+=|+..|.||... .+-.++.. .+.-...|.+ -.|+.-...++.+.+...|++|.
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItI-----iH~r~kk~-g~r~pV~i~~-~~d~~~~~~~i~~~~e~~Gi~I~ 77 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITI-----IHSRDKKY-GPRVPVQIVF-EGDREDKDAKIIRLLEEEGIIII 77 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEE-----EeecCccc-CCceeEEEEE-EecccHHHHHHHHHHHhCCcEEE
Confidence 35667788999999999999999999999852 11112111 1222233443 35777788999999999999998
Q ss_pred EEE
Q 017424 100 KVK 102 (372)
Q Consensus 100 ~A~ 102 (372)
+..
T Consensus 78 ~~d 80 (170)
T COG2061 78 RFD 80 (170)
T ss_pred Eec
Confidence 653
No 289
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.19 E-value=82 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.0
Q ss_pred eEEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
++|.+.|. ++||++.++.+.|++.|+++..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~ 34 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIM 34 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 35566664 7899999999999999999985
No 290
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=50.83 E-value=44 Score=23.51 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEEEEEEeccCCCCCCceEEEEEEeCCCCcHHHHHHHHH
Q 017424 28 PDKTGLGCDLCRIILFFGLSIVRGASVVLYYRAEMQAPKPSDVFLLKLSCYDRKGLLYDVTAVL 91 (372)
Q Consensus 28 ~Dr~GL~~~i~~~l~~~~lnI~~a~i~t~f~v~d~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L 91 (372)
++++|+.+++.+.|.++|+++.- .+.+.....+.+...|.++.+.++.+.|
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~-------------i~t~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL-------------IPTSENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE-------------EecCCCEEEEEEehhhhhHHHHHHHHhh
Confidence 57789999999999999999874 1223345666666677667777776654
No 291
>PRK00907 hypothetical protein; Provisional
Probab=50.65 E-value=82 Score=25.01 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=44.8
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEe--eeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS--RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~--~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.+-+.|.|.++++|...|..++..+.-.....++. .++.|....=.+.|. .++.++++.|-++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~-----ats~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR-----AESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 48899999999999999999999887655444442 235554333333333 235667888887775
No 292
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=50.53 E-value=95 Score=22.50 Aligned_cols=44 Identities=16% Similarity=0.327 Sum_probs=30.2
Q ss_pred eEEEEEEC--CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEE-EEEe
Q 017424 206 TLVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL-FIMQ 254 (372)
Q Consensus 206 tvi~v~~~--DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~-F~v~ 254 (372)
.+|.+.|. -+||++.++.++|.+.|+++.. ++ .|...... |.|.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~--i~---~~~s~~~is~~V~ 49 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIA--AH---QSMRNVDVQFVVD 49 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEE--EE---ecCCeeEEEEEEE
Confidence 34555553 3689999999999999999984 43 34444445 4444
No 293
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=50.46 E-value=78 Score=21.53 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.7
Q ss_pred EEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424 207 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 207 vi~v~~~---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
+|++.|. +++|+++++...|.+.++++..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~ 33 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIM 33 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 4566554 8899999999999999999985
No 294
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=50.39 E-value=45 Score=33.48 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=41.3
Q ss_pred EEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe-cCCCCCCChhHHHHHHHHHH
Q 017424 208 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 208 i~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~-~~g~~l~~~~~~~~l~~~L~ 274 (372)
|+|.|.||.||..++-..|...++|+...+|. ..| ..|+. + .+ +.+..+.|+..|+
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid--~~~-----~IYln~p---~l-~~~~fs~L~aei~ 59 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PIG-----RIYLNFP---EL-EFESFSSLMAEIR 59 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeec--CCC-----eEEEecc---cc-CHHHHHHHHHHHh
Confidence 78999999999999999999999999986664 444 34554 2 22 3455666665554
No 295
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.56 E-value=95 Score=22.23 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.7
Q ss_pred EEEEEEC---CcchHHHHHHHHHHhCCceEE
Q 017424 207 LVQIVCQ---DHKGLLYDIMRTLKDYNIQVS 234 (372)
Q Consensus 207 vi~v~~~---DRpGLL~~i~~~L~~~~~~I~ 234 (372)
+|.+.|. +.||++..+.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4566664 779999999999999887774
No 296
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=49.15 E-value=30 Score=25.34 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=25.8
Q ss_pred EEEEEe-CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424 72 LLKLSC-YDRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 72 ~i~v~~-~DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
.|+|.+ ++.||.+++|.+.|+++|+||---.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~ 34 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLIN 34 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence 456665 4679999999999999999998773
No 297
>PRK05925 aspartate kinase; Provisional
Probab=48.89 E-value=3.1e+02 Score=28.05 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=59.6
Q ss_pred CeeEEEEEEC-CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhcCCce
Q 017424 204 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR 282 (372)
Q Consensus 204 ~~tvi~v~~~-DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~~~~~ 282 (372)
+.+++++.+. ..+|.+.++...|.++|++|.. +. +.+. .=.|.+..+ .. .. ...+.|...+.....
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~--i~--s~~~--sis~~i~~~--~~-~~----~~~~~l~~~l~~~~~ 365 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGL--VM--AQNL--GVYFTIDDD--DI-SE----EYPQHLTDALSAFGT 365 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEE--Ee--ccCC--EEEEEEech--hc-cH----HHHHHHHHHhcCCce
Confidence 4567777543 2578899999999999999975 33 2221 123444421 11 11 122233333333222
Q ss_pred EEEeecCCCcceeeeeeEEEEeC--CCCchHHHHHHHHHhCCeEEEE
Q 017424 283 VTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFS 327 (372)
Q Consensus 283 v~i~~~g~~~~~~~~~~~~v~~~--DRpgll~dvt~~L~~~~~~V~~ 327 (372)
+.+.. + ...+.+.|. -++|+...+..+|++.|++|..
T Consensus 366 i~~~~-~-------~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 366 VSCEG-P-------LALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred EEEEC-C-------EEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 22211 1 134666664 2378999999999999999954
No 298
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.82 E-value=31 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHhCCceEEEE
Q 017424 78 YDRKGLLYDVTAVLCELELTIEKV 101 (372)
Q Consensus 78 ~DrpGLL~~I~~~L~~~glnI~~A 101 (372)
++.||++++|.++|+++|+||.--
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE
Confidence 688999999999999999999865
No 299
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=47.40 E-value=1.5e+02 Score=35.38 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=58.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeC--CC--eEEEEEEEEcCCCCCCC-HhHHHHHHHHHHHHHc
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTP--DG--KVMDLFFVTDTRELLHT-RKRKEDTYEHLKTILG 142 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~--~~--~~~DvF~V~~~~g~~~~-~~~~~~l~~~L~~~L~ 142 (372)
++.+.+.++.+.++..|+++.-+|..+|+.|.+.+-+... ++ ..+.-|.+..+.+...+ .+..+.+++.+.++..
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999998765432 22 35677888887665433 3455677788887765
Q ss_pred cc
Q 017424 143 NA 144 (372)
Q Consensus 143 ~~ 144 (372)
+.
T Consensus 567 g~ 568 (1528)
T PF05088_consen 567 GR 568 (1528)
T ss_pred CC
Confidence 54
No 300
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=46.55 E-value=1.2e+02 Score=22.39 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=27.0
Q ss_pred EEEEEEe---CCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSC---YDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|++.+ .+.+|+++++.++|++.++++.....
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 4567754 47899999999999999999986654
No 301
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=46.51 E-value=94 Score=21.32 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=25.2
Q ss_pred EEEEEe---CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424 72 LLKLSC---YDRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 72 ~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
.|++.+ .+.+|++.++.+.|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 5779999999999999999997554
No 302
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.02 E-value=96 Score=21.28 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=23.9
Q ss_pred EEEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424 207 LVQIVC---QDHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 207 vi~v~~---~DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
.|++.+ .+.||++.++...|.+.++++..
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~ 33 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEM 33 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 345554 46799999999999999999985
No 303
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=44.97 E-value=1.2e+02 Score=22.71 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=33.8
Q ss_pred CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 78 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 78 ~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.-.||+++++.++|+++|+||.--- + . + .-=.|.|.. .. ..++..++|.+.|++
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~--~-s-~-~~isftv~~--~~-~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS--T-S-E-VHVSMALHM--EN-AEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE--e-C-C-CEEEEEEeh--hh-cChHHHHHHHHHHHH
Confidence 3468999999999999999998653 2 2 2 111254433 22 122355666666666
No 304
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=43.62 E-value=44 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.2
Q ss_pred EEEEEc-CCCCChHHHHHHHHHhCCCeEEE
Q 017424 22 VITVNC-PDKTGLGCDLCRIILFFGLSIVR 50 (372)
Q Consensus 22 ~v~v~~-~Dr~GL~~~i~~~l~~~~lnI~~ 50 (372)
.|+|.+ ++.+|..+++.+.|+++|+||-=
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDm 32 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDL 32 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEE
Confidence 566666 56699999999999999999873
No 305
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.44 E-value=1.1e+02 Score=21.31 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=25.4
Q ss_pred eEEEEEEC---CcchHHHHHHHHHHhCCceEEE
Q 017424 206 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 206 tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
++|.+.|. ++||++..+...|++.|+++..
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~ 34 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRM 34 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 35666664 7899999999999999999985
No 306
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.64 E-value=1.5e+02 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCcchHHHHHHHHHHhCCceEEEEEEe
Q 017424 213 QDHKGLLYDIMRTLKDYNIQVSYGRFS 239 (372)
Q Consensus 213 ~DRpGLL~~i~~~L~~~~~~I~~a~i~ 239 (372)
.+.||+++++..+|++.|+||.. |.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDm--I~ 36 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDV--VA 36 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EE
Confidence 58899999999999999999996 65
No 307
>PRK00907 hypothetical protein; Provisional
Probab=41.03 E-value=1.6e+02 Score=23.37 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=42.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE--eeCCCeEE-EEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVM-DLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~--T~~~~~~~-DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.+-+.|.|.++++|...|..++..+.-......+. .+.+|+.. -.+.|.- .+.++++.|-++|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-----ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-----ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-----CCHHHHHHHHHHHhh
Confidence 48899999999999999999999987765555552 22345432 2233333 224556666555443
No 308
>PRK00341 hypothetical protein; Provisional
Probab=40.13 E-value=1.3e+02 Score=23.62 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=43.0
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEe--eeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS--RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~--~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.+-+.|.|.+.+++...|..++..+. ......+. .++.|....-.+.+. +++++++++|-++|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~-----~~s~~q~~~iy~~L~ 82 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV-----ATDEDQLQDINSALR 82 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 38899999999999999999998776 66544443 224443232223332 346777888887775
No 309
>PRK02047 hypothetical protein; Provisional
Probab=39.25 E-value=1.7e+02 Score=22.98 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=44.0
Q ss_pred eeEEEEEECCcchHHHHHHHHHHhCCceEEEEEEe--eeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHH
Q 017424 205 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS--RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 205 ~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~--~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
.+.+.+.+.+.+++...|..++..+...+..+.++ .++.|....=...+ .+++++++++|-++|.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v-----~v~s~eq~~~iY~~L~ 82 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITV-----RATSREQLDNIYRALT 82 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEE-----EECCHHHHHHHHHHHh
Confidence 48999999999999999999999886665544443 22444322222222 2346778888877775
No 310
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=39.06 E-value=1.5e+02 Score=21.45 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.6
Q ss_pred EEEEEEeC--CCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 71 FLLKLSCY--DRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 71 ~~i~v~~~--DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
..|.+.|. .+||+++++.++|.+.|+++.....
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEe
Confidence 45677764 3689999999999999999986554
No 311
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.83 E-value=1.3e+02 Score=20.63 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=25.2
Q ss_pred EEEEEe---CCCCcHHHHHHHHHHhCCceEEEEE
Q 017424 72 LLKLSC---YDRKGLLYDVTAVLCELELTIEKVK 102 (372)
Q Consensus 72 ~i~v~~---~DrpGLL~~I~~~L~~~glnI~~A~ 102 (372)
.|++.+ .+.+|++.++...|.+.++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 356655 4679999999999999999997654
No 312
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=36.32 E-value=3e+02 Score=28.66 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=42.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
.....+.|.-|||||-|.+++.+|.. .||...+-.-...+. ..+|....-. +++..++|.+.|++
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~-a~v~vgie~~----~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKD-AHIFVGVQLS----NPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCe-EEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 34568889999999999999999997 477665543222233 3344443321 24556777777665
No 313
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=35.86 E-value=18 Score=27.34 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEeCCCCchHHHHHHHHHhCCeEE
Q 017424 301 ELSGKGRPLVFHDITLALKMLDICI 325 (372)
Q Consensus 301 ~v~~~DRpgll~dvt~~L~~~~~~V 325 (372)
+..|+..|- +.||..+|.++|++|
T Consensus 52 e~~gRt~~~-~~Dv~~al~~~gi~v 75 (77)
T PF07524_consen 52 EHAGRTEPN-LQDVEQALEEMGISV 75 (77)
T ss_pred HHcCCCCCC-HHHHHHHHHHhCCCC
Confidence 567788887 999999999999986
No 314
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.28 E-value=1.3e+02 Score=22.91 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEecCCCCCCChhHHHHHHHHHHHHhc
Q 017424 214 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 214 DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
...|.+..+.++|.++|+++.+ +. |- .|-|-+..+...+++ +..+++.+.|...+.
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh--~P--SG----ID~~Siii~~~~~~~-~~~~~i~~~i~~~~~ 68 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEH--MP--SG----IDDISIIIRDNQLTD-EKEQKILAEIKEELH 68 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEee--ec--CC----CccEEEEEEccccch-hhHHHHHHHHHHhcC
Confidence 4579999999999999999996 65 22 235654434445543 256777777766554
No 315
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=34.89 E-value=68 Score=24.41 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
..++...|++.|+.|...++.. +..||+. ..|.+|++++
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~----~g~yev~---~~~~dG~~~e 69 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDD----DGCYEVE---ARDKDGKKVE 69 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcC----CCEEEEE---EEECCCCEEE
Confidence 7789999999999998888853 2235555 7788888664
No 316
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.64 E-value=60 Score=25.64 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=30.5
Q ss_pred chHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 309 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 309 gll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
.=+.++..-|++.|+.+...-..+.. ...+.-+.||+.|++|+.+.
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~~--~~~~~~~~~~~~DPdG~~iE 121 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRFE--GQPGEQETFFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceecc--CCcCceeEEEEECCCCCEEE
Confidence 34677888889999998654332211 11234577999999998763
No 317
>PLN02550 threonine dehydratase
Probab=33.75 E-value=6.2e+02 Score=27.10 Aligned_cols=154 Identities=12% Similarity=0.228 Sum_probs=83.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHccccccc
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISC 148 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~~~~~~ 148 (372)
....+.|.-+||||-|.+++.+|... ||....-.-..-+.+ -++....-. +++..++|.+.|++. + ...
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~----~~~~~~~i~~~l~~~--g-~~~- 484 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVH----TEQELQALKKRMESA--Q-LRT- 484 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeC----CHHHHHHHHHHHHHC--C-CCe-
Confidence 34678888999999999999999986 777655422222332 223322211 245566776666652 1 100
Q ss_pred ccccccceeeccccCCCCChhhHHhhhcccCCCCCCCCCCCCCCcEEEEeCCCCCCeeEEEEEECCcchHHHHHHHHHHh
Q 017424 149 DVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKD 228 (372)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvi~v~~~DRpGLL~~i~~~L~~ 228 (372)
... +. ......++ +....+ ...+ ..--++.+.-+.|||-|.+...+|..
T Consensus 485 ------~~l---~~-~~~~~~~L-R~v~g~-------------ra~~-------~~E~l~~v~fPErpGAl~~Fl~~lg~ 533 (591)
T PLN02550 485 ------VNL---TS-NDLVKDHL-RYLMGG-------------RAIV-------KDELLYRFVFPERPGALMKFLDAFSP 533 (591)
T ss_pred ------EeC---CC-ChHHhhhh-hheecc-------------cccc-------CceEEEEEEecCcCCHHHHHHHhhCC
Confidence 000 00 00000111 111000 0111 23568889999999999999988876
Q ss_pred C-CceEEEEEEeeeecCCeEEEEEE-EecCCCCCCChhHHHHHHHHHH
Q 017424 229 Y-NIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 229 ~-~~~I~~a~i~~~t~g~~~~d~F~-v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
. ++.-++ -. ..++....+|. ++. . +++.+.+.+.|.
T Consensus 534 ~~nITeF~--YR--~~~~~~a~vlvGi~v-----~-~~e~~~l~~~l~ 571 (591)
T PLN02550 534 RWNISLFH--YR--GQGETGANVLVGIQV-----P-PEEMQEFKSRAN 571 (591)
T ss_pred CCceeeEE--ee--cCCCCCccEEEEEee-----C-HHHHHHHHHHHH
Confidence 3 444443 32 34555555664 332 2 345677777765
No 318
>PRK03094 hypothetical protein; Provisional
Probab=32.51 E-value=1.2e+02 Score=23.47 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCeEEE-----------EEEEeeeccCc---eeeeEEEEEEeCCCCCCCChhhHHHHHHHHH
Q 017424 311 FHDITLALKMLDICIF-----------SAEIGRHMIGD---REWEVYRVLLDEGDGLSVPRNKIEEGVWKLL 368 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~-----------~a~i~~~~~~~---~~~~~~~f~~~~~~g~~~~~~~~~~~vr~~~ 368 (372)
|.||-..|+..||.|. -|-|.+-...+ .+-...-.-+.+++|.. .++|+..|+.-|
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~T--aeEI~~~ve~r~ 79 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLT--ADEICQQVESRL 79 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCC--HHHHHHHHHHhh
Confidence 6789999999999992 22232211000 01122333455888854 577888887544
No 319
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=31.58 E-value=2e+02 Score=22.13 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=36.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCC
Q 017424 68 SDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 124 (372)
Q Consensus 68 ~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~ 124 (372)
+....+.+...| +.+..+.|..+|++|...... ..++. ..|++.|++|..
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~-~~~~~--~~~~~~DPdG~~ 109 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTD-IPGVG--RFAVFADPEGAV 109 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcc-cCCcE--EEEEEECCCCCE
Confidence 456677777777 777888899999999876542 22222 469999999974
No 320
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.50 E-value=1.9e+02 Score=20.40 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEEEC---CcchHHHHHHHHHHhCCce
Q 017424 206 TLVQIVCQ---DHKGLLYDIMRTLKDYNIQ 232 (372)
Q Consensus 206 tvi~v~~~---DRpGLL~~i~~~L~~~~~~ 232 (372)
.+|.+.|. ++||++.++..+|.+.++.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 45667765 7899999999999874443
No 321
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=31.03 E-value=1.5e+02 Score=21.66 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCC
Q 017424 88 TAVLCELELTIEKVKISTTPDGKVMDLFFVTDTR 121 (372)
Q Consensus 88 ~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~ 121 (372)
......+|..+..=.+ +|.||+.+.+|.|....
T Consensus 2 ~~~i~~~GY~~E~h~V-~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEV-TTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEE-E-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEE-EeCCCcEEEEEEccCCC
Confidence 4567789999999999 56899999999997643
No 322
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.85 E-value=96 Score=24.15 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=33.9
Q ss_pred EEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 300 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 300 ~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
+.+...++ +-.+...|++.|+.+..+...+.. . .+..+.||+.|++|..+.
T Consensus 71 i~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~--~-~~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 71 LCLITEPP---IDELVAHLEAHGVPIEEGPVPRTG--A-RGPITSVYFRDPDGNLIE 121 (125)
T ss_pred EEEEeccc---HHHHHHHHHHCCceeecCcccccC--C-CCCccEEEEECCCCCEEE
Confidence 44444444 777888999999988655443311 1 123477899999998764
No 323
>PRK14637 hypothetical protein; Provisional
Probab=30.65 E-value=3.6e+02 Score=23.35 Aligned_cols=61 Identities=8% Similarity=-0.045 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424 80 RKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 80 rpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~ 143 (372)
--|....+..++.++|+.+.+..+....+++.+-+|. |.++. ++=+.++++.+.|..+|..
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I--D~~~g-V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI--YSAGG-VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE--ECCCC-CCHHHHHHHHHHHHHHhcc
Confidence 4588889999999999999999997666667776664 33333 5556788888888887753
No 324
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=30.55 E-value=1.6e+02 Score=22.79 Aligned_cols=47 Identities=4% Similarity=-0.075 Sum_probs=32.2
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
.+.+...| +......|+.+|+++...-.. ..|--..|++.|++|+.+
T Consensus 64 ~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~------~~~~~~~~~~~DPdG~~~ 110 (114)
T cd07247 64 LVYFAVDD----VDAAAARVEAAGGKVLVPPTD------IPGVGRFAVFADPEGAVF 110 (114)
T ss_pred EEEEEeCC----HHHHHHHHHHCCCEEEeCCcc------cCCcEEEEEEECCCCCEE
Confidence 35555666 677788899999998544221 122336799999999876
No 325
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=30.33 E-value=72 Score=25.41 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCce-eeeEEEEEEeCCCCCCCC-hhhHHHHHHH
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDR-EWEVYRVLLDEGDGLSVP-RNKIEEGVWK 366 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~-~~~~~~f~~~~~~g~~~~-~~~~~~~vr~ 366 (372)
+.+|..+++++|+... +-+.-..++ -|+..--++.+..|.... .++|...+|.
T Consensus 34 ~~ei~~a~~~LGl~~~---v~~dk~yPr~~w~~~g~vive~~~~K~~~lk~ia~~lr~ 88 (93)
T COG1400 34 LEEIAEALRELGLKPK---VERDKKYPRLWWEISGRVIVESNGKKSKLLKAIAAKLRE 88 (93)
T ss_pred HHHHHHHHHHcCCCee---echhhcCCCchhhhCceEEEecCccHhHHHHHHHHHHHH
Confidence 5789999999999985 434334555 788886666677774433 4445555554
No 326
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.28 E-value=1.8e+02 Score=22.15 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424 78 YDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 78 ~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~ 143 (372)
....|++.++-++|.++|+++...- | | .|.|-|.-.+. .++++..+++.+.|++.++.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~P--S---G--ID~~Siii~~~-~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMP--S---G--IDDISIIIRDN-QLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeec--C---C--CccEEEEEEcc-ccchhhHHHHHHHHHHhcCC
Confidence 3456999999999999999998543 2 2 34344433222 23344566777777776653
No 327
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.32 E-value=2.1e+02 Score=20.34 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=22.9
Q ss_pred EEEEEeC---CCCcHHHHHHHHHHhCCceEE
Q 017424 72 LLKLSCY---DRKGLLYDVTAVLCELELTIE 99 (372)
Q Consensus 72 ~i~v~~~---DrpGLL~~I~~~L~~~glnI~ 99 (372)
.|.+.|. +.||+++++.++|.+.++++.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i 32 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLV 32 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEE
Confidence 4667774 679999999999999877773
No 328
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=29.27 E-value=1.2e+02 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 309 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 309 gll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
-=+.+...-|+++|+.+...-.. ..|-.+.|++.|++|+.+
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~------~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRD------DPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEE------ETTSEEEEEEE-TTS-EE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEE------cCCCeEEEEEECCCCCEE
Confidence 33566667889999988442221 233458999999999865
No 329
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=28.80 E-value=3.8e+02 Score=24.90 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=60.9
Q ss_pred CcEEEEEeccCCCCeEEEEEEcCCCCChHHHHHHHHHhCCCeEEE----EEEEEE---EEEe--c---------------
Q 017424 6 DDVVIISQSDKEGDPCVITVNCPDKTGLGCDLCRIILFFGLSIVR----GASVVL---YYRA--E--------------- 61 (372)
Q Consensus 6 ~~~v~~~~~~~~~~~~~v~v~~~Dr~GL~~~i~~~l~~~~lnI~~----a~i~t~---f~v~--d--------------- 61 (372)
+++.... ..|.+-.+.|.+.+.++....++|-.+|..+|+++-. .++|.- +.+. +
T Consensus 79 ~~~~yEg-~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i~~~~~~~~~d~~~e~aIe~Ga 157 (234)
T PF01709_consen 79 EEITYEG-YGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVIEVSKKDLDEDELMEDAIEAGA 157 (234)
T ss_dssp EEEEEEE-EETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEEEEEHCCS-HHHHHHHHHHHTE
T ss_pred eEEEEEE-EcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEEEEEeCCCChHHHHHHHHhCCC
Confidence 3344433 3456666788999999999999999999999999987 555554 3333 1
Q ss_pred cCCCCCCceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE
Q 017424 62 MQAPKPSDVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS 104 (372)
Q Consensus 62 ~~~~~~~~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~ 104 (372)
..+....+. ++|+| .|.-|..+...|...|+.|.++.+.
T Consensus 158 eDve~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 158 EDVEEDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp SEEEECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred cEeeecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 001112222 55555 3778999999999999999999883
No 330
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=28.79 E-value=97 Score=24.07 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
+.++..-|+..|+.+... ..+..|-...||+.|++|+.+
T Consensus 68 ~~~~~~~l~~~G~~~~~~------~~~~~~g~~~~~~~DP~Gn~i 106 (112)
T cd07238 68 VDAALARAVAAGFAIVYG------PTDEPWGVRRFFVRDPFGKLV 106 (112)
T ss_pred HHHHHHHHHhcCCeEecC------CccCCCceEEEEEECCCCCEE
Confidence 556677889999998431 112235567899999999876
No 331
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=28.54 E-value=88 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
+..+...|++.|+.+..+. ++|..+. -+.||+.|++|..+.
T Consensus 70 v~~~~~~l~~~G~~~~~~p-~~~~~~~----~~~~y~~DPdG~~iE 110 (141)
T cd07258 70 IGKALYRIKAHDVKVVFGP-GRHPPSD----SIFFYFLDPDGITVE 110 (141)
T ss_pred HHHHHHHHHHCCCcEEeCC-ceECCCC----CEEEEEECCCCCEEE
Confidence 3566778899999874432 3333322 377899999999775
No 332
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=28.21 E-value=1.1e+02 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 312 HDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 312 ~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
.....-|++.|+.+...- .++..+ ..+.||+.|++|..+
T Consensus 88 ~~~~~~l~~~g~~~~~~~-~~~~~~----~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 88 DAAYERLKAQGVEIVEEP-DRYYFG----SGYSFYFRDPDGNLI 126 (128)
T ss_dssp HHHHHHHHHTTGEEEEEE-EEHSTT----CEEEEEEEETTSEEE
T ss_pred HHHHHHHhhcCccEEecC-CCCCCC----CEEEEEEECCCCCEE
Confidence 456678899999986443 333222 457789999999865
No 333
>PRK02047 hypothetical protein; Provisional
Probab=27.65 E-value=3e+02 Score=21.57 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEE
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI 103 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I 103 (372)
-.+.+.|.+.+.+++...|..++..+...+..+.+
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i 49 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKI 49 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCce
Confidence 35899999999999999999999999777666555
No 334
>PRK00341 hypothetical protein; Provisional
Probab=26.44 E-value=3.1e+02 Score=21.53 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=40.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEE--eeCCCeEEE-EEEEEcCCCCCCCHhHHHHHHHHHH
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKIS--TTPDGKVMD-LFFVTDTRELLHTRKRKEDTYEHLK 138 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~--T~~~~~~~D-vF~V~~~~g~~~~~~~~~~l~~~L~ 138 (372)
.+.+.|.|.+.+++...|.+++..+. ......+. .+.+|+..- .+.|.- .+.+++..+-+.|.
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~-----~s~~q~~~iy~~L~ 82 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA-----TDEDQLQDINSALR 82 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence 38999999999999999999998876 66555442 234565322 233322 12445555555544
No 335
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=26.22 E-value=77 Score=25.35 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCeEEEEEEEeee-ccCceeeeEEEEEEeCCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRH-MIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~-~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
+-+....|++.|+.+...-..+. ..-...|-.+.||+.|++|+.+.
T Consensus 71 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iE 117 (123)
T cd08351 71 FDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLE 117 (123)
T ss_pred HHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEE
Confidence 56677888999998854322210 00001345689999999999764
No 336
>PRK06724 hypothetical protein; Provisional
Probab=25.69 E-value=1e+02 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 310 VFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 310 ll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
-+.++...|+..|+.+.+....+... .|-.+.+|+.|++|+++.
T Consensus 76 dvd~~~~~l~~~G~~~~~~p~~~~~~---~~g~~~~~f~DPdG~~iE 119 (128)
T PRK06724 76 VVDEVAEFLSSTKIKIIRGPMEMNHY---SEGYYTIDFYDPNGFIIE 119 (128)
T ss_pred HHHHHHHHHHHCCCEEecCCcccCCC---CCCEEEEEEECCCCCEEE
Confidence 45778889999999885543322111 133578889999999874
No 337
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=25.63 E-value=2.2e+02 Score=19.33 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.4
Q ss_pred EEEEE---CCcchHHHHHHHHHHhCCceEEE
Q 017424 208 VQIVC---QDHKGLLYDIMRTLKDYNIQVSY 235 (372)
Q Consensus 208 i~v~~---~DRpGLL~~i~~~L~~~~~~I~~ 235 (372)
|++.+ .+.||++.++...|++.|+++..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~ 33 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEM 33 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 44544 46799999999999999999985
No 338
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=24.69 E-value=4.9e+02 Score=22.95 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=58.9
Q ss_pred CeeEEEEEECCcchHHHHHH-HHHHhCC-ceEEEEEEeeeecCCeEEEEEEE-e-cCC--CCCCChhHHHHHHHHHHHHh
Q 017424 204 GHTLVQIVCQDHKGLLYDIM-RTLKDYN-IQVSYGRFSRRQRGNCEIDLFIM-Q-ADG--KKIVDPSKQNGLSSRLWMEL 277 (372)
Q Consensus 204 ~~tvi~v~~~DRpGLL~~i~-~~L~~~~-~~I~~a~i~~~t~g~~~~d~F~v-~-~~g--~~l~~~~~~~~l~~~L~~~l 277 (372)
...+|+|.|+|+..+|..++ +-+..+. -...++-+- +..++..+.++| . .+. --+.++...+.+.+.|...+
T Consensus 6 ~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l--~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~~~~ 83 (211)
T PF01571_consen 6 HRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFL--NPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLKKYI 83 (211)
T ss_dssp TSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE---TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEE--CCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHHHhc
Confidence 47899999999999998754 3344222 223333343 455666665555 3 333 12234445566777776554
Q ss_pred cCCceEEEeecCCCcceeeeeeEEEEeCCCCchHHHHH
Q 017424 278 LQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDIT 315 (372)
Q Consensus 278 ~~~~~v~i~~~g~~~~~~~~~~~~v~~~DRpgll~dvt 315 (372)
.. .+|++.+...+ ...+.+.|..-..++..+.
T Consensus 84 ~~-~~v~i~~~~~~-----~~~~~l~Gp~a~~~l~~~~ 115 (211)
T PF01571_consen 84 LR-SDVEIEDVSDD-----LAVLGLQGPKAAEVLQKLF 115 (211)
T ss_dssp HH-SS-EEEEETTT-----EEEEEEESTTHHHHHHHHS
T ss_pred cc-cCcEEEEcccc-----eeEEEEEcchhhHHHHHhc
Confidence 32 45555554432 2467888887777776665
No 339
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=24.29 E-value=90 Score=26.49 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 312 HDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 312 ~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
..+..-|+..|+.+..+ .++|..+ --+.||+.|++|+.+.
T Consensus 88 ~~~~~~L~~~G~~v~~~-~~~~~~~----~~~~~y~~DPdG~~iE 127 (154)
T cd07237 88 GRAYDRVRARGIPIAMT-LGRHTND----RMLSFYVRTPSGFAIE 127 (154)
T ss_pred HHHHHHHHHcCCceecc-CCccCCC----CcEEEEEECCCCcEEE
Confidence 44667789999998532 2333221 2367999999999765
No 340
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=24.02 E-value=1.7e+02 Score=29.99 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=45.1
Q ss_pred eEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEeeeccCce-eeeEEEEEEeCCCCCCCChhhHHHHHHHH
Q 017424 299 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR-EWEVYRVLLDEGDGLSVPRNKIEEGVWKL 367 (372)
Q Consensus 299 ~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~-~~~~~~f~~~~~~g~~~~~~~~~~~vr~~ 367 (372)
.+.++..+ +|-|.++-.++++.++|+.|-|-.. ++... +-..+.|++ |-++...+-+++++.+++.
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~-~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~l~~~ 107 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETRP-TRTLSNADVDYSCLI-TLEANEINMSLLIESLRGN 107 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecCC-ccccCCCCCceEEEE-EEeccHhhHHHHHHHHHhh
Confidence 56666666 9999999999999999999988742 21111 113467777 5455555456678888764
No 341
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.48 E-value=81 Score=24.72 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEE--EeeCCCeEEEEEEE
Q 017424 70 VFLLKLSCYDRKGLLYDVTAVLCELELTIEKVKI--STTPDGKVMDLFFV 117 (372)
Q Consensus 70 ~~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I--~T~~~~~~~DvF~V 117 (372)
-..+.|.-|.|||-|.+.+.++.... ||..-+= .....++++--|.|
T Consensus 10 E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v 58 (91)
T PF00585_consen 10 EALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEV 58 (91)
T ss_dssp EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-
T ss_pred EEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEe
Confidence 45677888999999999999987666 2444333 22223455555554
No 342
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=23.28 E-value=1.8e+02 Score=27.29 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEE
Q 017424 308 PLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLL 347 (372)
Q Consensus 308 pgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~ 347 (372)
--++.|+...|.++|+.| +..-|..++.|||+..-+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~v---e~~h~E~gpgQ~Ei~~~~~ 104 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPV---EQIHHEVGPGQYEINLGPC 104 (259)
T ss_dssp HHHHHHHHHHHHHCT--E---EEEEEESSTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhhccc---cccccccchHhhccccccC
Confidence 568899999999999999 4445556777999997765
No 343
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=22.71 E-value=4.1e+02 Score=31.44 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=54.9
Q ss_pred CcEEEEeCCCCC--CeeEEEEEECCcchHHHHHHHHHHhCCceEEEEE---Eee--eecC----------CeEEEEEEEe
Q 017424 192 NVSVTIDNSLSP--GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGR---FSR--RQRG----------NCEIDLFIMQ 254 (372)
Q Consensus 192 ~~~V~i~~~~~~--~~tvi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~---i~~--~t~g----------~~~~d~F~v~ 254 (372)
.+.|.+.....+ .+|+|+|...|.|-|+-.|...|+++|+.++-.- +.+ +..| ......++++
T Consensus 73 ~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~~hpv~~~~r~~~g~l~~i~~~~~~~~~s~~~i~ 152 (1592)
T COG2902 73 APCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLLLHPVIDVRRSPKGELLKIGPKGTKQRESLMHIH 152 (1592)
T ss_pred CceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEEecccEEeecCCCCceeecCCCCcccceeEEEEe
Confidence 356666543333 4699999999999999999999999999987421 111 1111 1233444554
Q ss_pred cCCCCCCChhHHHHHHHHHHHHhc
Q 017424 255 ADGKKIVDPSKQNGLSSRLWMELL 278 (372)
Q Consensus 255 ~~g~~l~~~~~~~~l~~~L~~~l~ 278 (372)
.+ ++.+.+....|.++|...+.
T Consensus 153 i~--~~~~~~~~~~l~~~i~~~l~ 174 (1592)
T COG2902 153 ID--RLGDAKSLRTLEEAIREVLS 174 (1592)
T ss_pred cc--cccchhhHhhHHHHHHHHHH
Confidence 21 34456667777777776665
No 344
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.53 E-value=1e+02 Score=24.43 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
+.+.-..|++.|+.+.+..+.. ..-.+.|-...|++.|++|+.+
T Consensus 66 id~~~~~l~~~G~~~~~~~~~~-~~~~~~~g~r~f~~~DPdGn~~ 109 (113)
T cd08356 66 LEAYYEHIKALGLPKKFPGVKL-PPITQPWWGREFFLHDPSGVLW 109 (113)
T ss_pred HHHHHHHHHHcCCcccccceec-CccccCCCcEEEEEECCCccEE
Confidence 5556678899998653322211 1111245568999999999876
No 345
>PRK04998 hypothetical protein; Provisional
Probab=22.37 E-value=3.7e+02 Score=20.79 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=24.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHHHhCC
Q 017424 69 DVFLLKLSCYDRKGLLYDVTAVLCELE 95 (372)
Q Consensus 69 ~~~~i~v~~~DrpGLL~~I~~~L~~~g 95 (372)
-.+.+.+.++..+++...|.+++..+-
T Consensus 14 c~~~~Kvig~~~~~~~~~v~~v~~~~~ 40 (88)
T PRK04998 14 CSFTYKVMGLARPELVDQVVEVVQRHA 40 (88)
T ss_pred CCceEEEEEeCcHhHHHHHHHHHHHhC
Confidence 358999999999999999999998773
No 346
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=22.33 E-value=3.6e+02 Score=27.42 Aligned_cols=119 Identities=14% Similarity=0.181 Sum_probs=67.8
Q ss_pred CeeEEEEEEC---CcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe--cCCCCCCCh----hHHHHHHHHHH
Q 017424 204 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDP----SKQNGLSSRLW 274 (372)
Q Consensus 204 ~~tvi~v~~~---DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~--~~g~~l~~~----~~~~~l~~~L~ 274 (372)
+-|+|.+.+. -..|.|+.|..+|.++|+.|.- |+|+ .-.|. .+-.+.... ..+++..+.|+
T Consensus 392 nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDv--vaTS--------EV~iSltL~~~~~~sreliq~~l~~a~eeL~ 461 (559)
T KOG0456|consen 392 NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDV--VATS--------EVSISLTLDPSKLDSRELIQGELDQAVEELE 461 (559)
T ss_pred cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEE--EEee--------eEEEEEecChhhhhhHHHHHhhHHHHHHHHH
Confidence 4577777654 4579999999999999999984 5432 12221 122222111 12222333322
Q ss_pred HHhcCCceEEEeecCCCcceeeeeeEEEEeCC--CCchHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCC
Q 017424 275 MELLQPLRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 351 (372)
Q Consensus 275 ~~l~~~~~v~i~~~g~~~~~~~~~~~~v~~~D--Rpgll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~ 351 (372)
.. -.|++. ++. .-+.+.|+= -.|++--+-|+|++.|+|| ++.. .|.. +||.-.+.+.+
T Consensus 462 ki----~~vdll-~~~-------sIiSLiGnvq~ss~i~~rmF~~l~e~giNv---qMIS--QGAs--kvNIS~ivne~ 521 (559)
T KOG0456|consen 462 KI----AVVDLL-KGR-------SIISLIGNVQNSSGILERMFCVLAENGINV---QMIS--QGAS--KVNISCIVNEK 521 (559)
T ss_pred Hh----hhhhhh-ccc-------hHHhhhhhhhhhhHHHHHHHHHHHhcCcce---eeec--cccc--cceEEEEEChH
Confidence 11 011111 111 134555653 3688888999999999999 5543 4445 78887775543
No 347
>PRK14646 hypothetical protein; Provisional
Probab=22.01 E-value=5.2e+02 Score=22.36 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424 82 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 82 GLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~ 143 (372)
-+...+..++..+|+.+.+.......+++++=+|. ..++|..++=+.++.+.+.+...|..
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I-Dk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIII-KKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE-ECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 35567888999999999999997665667765554 33334335556788888888888864
No 348
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=21.86 E-value=3.7e+02 Score=30.63 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=40.7
Q ss_pred eCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCC
Q 017424 77 CYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTREL 123 (372)
Q Consensus 77 ~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~ 123 (372)
.+-..|+|+.++.++..+|+.+.++++.+..+|-.+-.|||....+.
T Consensus 240 ~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 240 RYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 35556999999999999999999999998888988889999876544
No 349
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=21.49 E-value=2.6e+02 Score=27.36 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEEEe---cCCCCCCChhHHHHHHHHHHHHhcCCc--------
Q 017424 213 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ---ADGKKIVDPSKQNGLSSRLWMELLQPL-------- 281 (372)
Q Consensus 213 ~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~v~---~~g~~l~~~~~~~~l~~~L~~~l~~~~-------- 281 (372)
.-.|--|....+.|..++.|+..-.++ +|-+. ..+... .+-..|. .++.+++-.. +.+++.+
T Consensus 190 lSHPQal~Qce~~L~~l~~~~~r~a~~-dTa~A---a~~~s~~~~~d~~AIA-Se~aA~ly~l--~Il~~~IqDd~~NvT 262 (377)
T KOG2797|consen 190 LSHPQALGQCECSLTKLGPNAAREAVS-DTAGA---AEQISASNTADTAAIA-SERAAELYGL--NILEKNIQDDLGNVT 262 (377)
T ss_pred ecCcHHHHHHHHHHHhcccceeeeecc-chHHH---HHHHHhcccccHHHHH-HHHHHHHhcc--hhhhhhcccccCCee
Confidence 457889999999999999988753333 12221 112111 1111221 1121211111 2222222
Q ss_pred eEEEeecCC---CcceeeeeeEEEEeCCCCchHHHHHHHHHhCCeEEEEEEEee-------eccCceeeeEEEEEE
Q 017424 282 RVTVVSRGP---DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR-------HMIGDREWEVYRVLL 347 (372)
Q Consensus 282 ~v~i~~~g~---~~~~~~~~~~~v~~~DRpgll~dvt~~L~~~~~~V~~a~i~~-------~~~~~~~~~~~~f~~ 347 (372)
+.-+..++| ++.....+.+--.-.+-||.|+++-.+|+-..+|+.+-+..- -..+++.|+ |.||+
T Consensus 263 RFLmLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP~h~~p~r~v~~~k~f~-ylFyi 337 (377)
T KOG2797|consen 263 RFLMLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRPFHNRPLRVVDDSKNFE-YLFYI 337 (377)
T ss_pred EEEEEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeecccccCCCccccccccccc-EEEEE
Confidence 111223332 222222222223367889999999999999999998776641 123455555 66776
No 350
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.27 E-value=2.1e+02 Score=22.10 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=33.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCC
Q 017424 71 FLLKLSCYDRKGLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELL 124 (372)
Q Consensus 71 ~~i~v~~~DrpGLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~ 124 (372)
..+.+...+. +..+...|.+.|+++...-............|++.|++|..
T Consensus 69 ~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ 119 (125)
T cd07253 69 DDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNL 119 (125)
T ss_pred ceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCE
Confidence 3444555444 88999999999999876554222111122458899999974
No 351
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=20.85 E-value=3.7e+02 Score=22.29 Aligned_cols=58 Identities=10% Similarity=0.021 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeC---------------------CCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHH
Q 017424 82 GLLYDVTAVLCELELTIEKVKISTTP---------------------DGKVMDLFFVTDTRELLHTRKRKEDTYEHLKT 139 (372)
Q Consensus 82 GLL~~I~~~L~~~glnI~~A~I~T~~---------------------~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~ 139 (372)
-+...++..|..+|++|......+++ +..-..-|-+.+++|..++++..++|++.+.+
T Consensus 55 ~~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~~~~ggi~iTaShnp~~~ngik~~~~~G~~~~~~~~~~I~~~~~~ 133 (137)
T PF02878_consen 55 MLAKALAAGLRANGVDVIDIGLVPTPALSFAIRQLNADGGIMITASHNPPGYNGIKFFDANGGPISPEEERKIEQIIER 133 (137)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHHTESEEEEE--TTS-TTEEEEEEEETTSSB--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccCcHHhhhhccccccceeeEEEecCCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHh
Confidence 36777889999999999988865541 11112235556667777777666777666554
No 352
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.67 E-value=70 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.6
Q ss_pred CCCCchHHHHHHHHHhCCeEEEEEEE
Q 017424 305 KGRPLVFHDITLALKMLDICIFSAEI 330 (372)
Q Consensus 305 ~DRpgll~dvt~~L~~~~~~V~~a~i 330 (372)
-|=+|+|.-|.+.|+|+|+.||--.-
T Consensus 74 FgltGilasV~~pLsd~gigIFavSt 99 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFAVST 99 (128)
T ss_pred CCcchhhhhhhhhHhhCCccEEEEEe
Confidence 38899999999999999999985443
No 353
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.64 E-value=3.9e+02 Score=20.32 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=38.5
Q ss_pred EEEEEECCcchHHHHHHHHHHhCCceEEEEEEeeeecCCeEEEEEE-EecCCCCCCChhHHHHHHHHHH
Q 017424 207 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLW 274 (372)
Q Consensus 207 vi~v~~~DRpGLL~~i~~~L~~~~~~I~~a~i~~~t~g~~~~d~F~-v~~~g~~l~~~~~~~~l~~~L~ 274 (372)
++.|.-+.|||-|......|.. +.||..-+-. -.|+....+|. +.. .++ +.+.+.+.|.
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR--~~~~~~a~vlvGi~~-----~~~-~~~~l~~~l~ 62 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYR--NQGSDYGRVLVGIQV-----PDA-DLDELKERLD 62 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEe--cCCCCceeEEEEEEe-----ChH-HHHHHHHHHH
Confidence 4667789999999999988843 6677754443 34555556664 332 223 5677777765
No 354
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.57 E-value=1.1e+02 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCCC
Q 017424 309 LVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP 356 (372)
Q Consensus 309 gll~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~~ 356 (372)
.=+.+....|++.|+.+.... ..|.-+.||+.|++|+.+.
T Consensus 66 ~d~~~~~~~l~~~Gi~~~~~~--------~~~~~~~~~~~DP~Gn~ie 105 (112)
T cd08344 66 DDFAAFARHLEAAGVALAAAP--------PGADPDGVWFRDPDGNLLQ 105 (112)
T ss_pred hhHHHHHHHHHHcCCceecCC--------CcCCCCEEEEECCCCCEEE
Confidence 345667778899999874321 1223356889999999874
No 355
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.51 E-value=1.4e+02 Score=23.29 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCeEEEEEEEeeeccCceeeeEEEEEEeCCCCCCC
Q 017424 311 FHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSV 355 (372)
Q Consensus 311 l~dvt~~L~~~~~~V~~a~i~~~~~~~~~~~~~~f~~~~~~g~~~ 355 (372)
+-++..-|++.|+.+...-. ...|-...|++.|++|+.+
T Consensus 77 id~~~~~l~~~G~~~~~~~~------~~~~g~~~~~~~DP~G~~i 115 (119)
T cd08359 77 VDAEYERLKAEGLPIVLPLR------DEPWGQRHFIVRDPNGVLI 115 (119)
T ss_pred HHHHHHHHHhcCCCeeeccc------cCCCcceEEEEECCCCCEE
Confidence 77788899999998854321 2245667889999999865
No 356
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.07 E-value=1.5e+02 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=30.0
Q ss_pred chHHHHHHHHHhCCeEEEEEEEe-eeccCceeeeEEEEEEeCCC
Q 017424 309 LVFHDITLALKMLDICIFSAEIG-RHMIGDREWEVYRVLLDEGD 351 (372)
Q Consensus 309 gll~dvt~~L~~~~~~V~~a~i~-~~~~~~~~~~~~~f~~~~~~ 351 (372)
|-..||...|++.|+.|+--+|. ++++ +--+|+++|-.
T Consensus 23 G~~~~VA~~L~e~g~dv~atDI~~~~a~-----~g~~~v~DDit 61 (129)
T COG1255 23 GFFLDVAKRLAERGFDVLATDINEKTAP-----EGLRFVVDDIT 61 (129)
T ss_pred chHHHHHHHHHHcCCcEEEEecccccCc-----ccceEEEccCC
Confidence 67889999999999999998886 3333 44678887754
No 357
>PRK14634 hypothetical protein; Provisional
Probab=20.06 E-value=5.8e+02 Score=22.10 Aligned_cols=61 Identities=7% Similarity=-0.037 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEeeCCCeEEEEEEEEcCCCCCCCHhHHHHHHHHHHHHHcc
Q 017424 82 GLLYDVTAVLCELELTIEKVKISTTPDGKVMDLFFVTDTRELLHTRKRKEDTYEHLKTILGN 143 (372)
Q Consensus 82 GLL~~I~~~L~~~glnI~~A~I~T~~~~~~~DvF~V~~~~g~~~~~~~~~~l~~~L~~~L~~ 143 (372)
-+-..+..++..+|+.+.+..+....+++++=+|. ..+.|..++=+.++.+.+.|...|..
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~I-D~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQI-RRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEE-ECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 45566777888999999999997665667775554 33455445666788898899888864
Done!