Query 017425
Match_columns 372
No_of_seqs 243 out of 1178
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 7.1E-34 1.5E-38 253.7 12.7 115 246-369 5-126 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 5.5E-34 1.2E-38 252.0 10.6 114 247-369 2-121 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 1.1E-31 2.3E-36 238.4 13.3 114 247-369 3-122 (152)
4 PLN00172 ubiquitin conjugating 100.0 4.9E-31 1.1E-35 232.7 13.2 114 247-369 2-121 (147)
5 KOG0419 Ubiquitin-protein liga 100.0 1.2E-30 2.6E-35 227.2 10.5 116 245-369 3-124 (152)
6 KOG0895 Ubiquitin-conjugating 100.0 1.1E-30 2.3E-35 282.1 6.4 141 219-362 826-966 (1101)
7 PF00179 UQ_con: Ubiquitin-con 100.0 1E-28 2.2E-33 213.2 11.5 112 250-369 1-119 (140)
8 KOG0426 Ubiquitin-protein liga 99.9 7.1E-28 1.5E-32 210.4 11.1 124 244-369 2-138 (165)
9 cd00195 UBCc Ubiquitin-conjuga 99.9 2.4E-27 5.1E-32 205.3 12.4 113 249-369 2-120 (141)
10 KOG0425 Ubiquitin-protein liga 99.9 2.1E-27 4.5E-32 211.9 11.9 122 246-369 5-139 (171)
11 KOG0418 Ubiquitin-protein liga 99.9 7.7E-27 1.7E-31 213.3 10.3 113 247-368 4-126 (200)
12 smart00212 UBCc Ubiquitin-conj 99.9 2.6E-26 5.7E-31 199.6 12.4 113 249-369 1-120 (145)
13 KOG0424 Ubiquitin-protein liga 99.9 2.2E-26 4.7E-31 203.0 11.1 117 245-368 3-130 (158)
14 KOG0421 Ubiquitin-protein liga 99.9 1.2E-25 2.7E-30 198.6 9.1 116 244-368 27-148 (175)
15 KOG0895 Ubiquitin-conjugating 99.9 2.1E-24 4.5E-29 233.7 11.2 146 217-363 254-400 (1101)
16 KOG0422 Ubiquitin-protein liga 99.9 6.2E-24 1.4E-28 186.7 9.5 113 247-368 3-122 (153)
17 KOG0894 Ubiquitin-protein liga 99.9 1.4E-22 3E-27 188.9 10.9 115 243-365 2-118 (244)
18 KOG0427 Ubiquitin conjugating 99.9 3.3E-22 7.3E-27 174.7 11.2 101 243-352 12-112 (161)
19 KOG0416 Ubiquitin-protein liga 99.9 2.1E-22 4.6E-27 182.0 8.7 110 247-368 4-121 (189)
20 KOG0423 Ubiquitin-protein liga 99.9 8E-23 1.7E-27 185.4 3.5 119 242-369 6-130 (223)
21 KOG0420 Ubiquitin-protein liga 99.9 7.3E-22 1.6E-26 178.6 7.4 116 242-369 24-149 (184)
22 KOG0428 Non-canonical ubiquiti 99.7 8.9E-18 1.9E-22 159.6 9.5 107 245-361 10-116 (314)
23 KOG0429 Ubiquitin-conjugating 99.4 1.2E-12 2.6E-17 123.2 8.2 104 249-362 22-128 (258)
24 KOG0896 Ubiquitin-conjugating 98.7 2.7E-08 5.7E-13 87.8 5.2 83 247-331 6-93 (138)
25 PF14461 Prok-E2_B: Prokaryoti 97.7 7.7E-05 1.7E-09 65.0 6.3 55 291-352 34-92 (133)
26 PF08694 UFC1: Ubiquitin-fold 97.5 6.9E-05 1.5E-09 67.4 2.9 86 244-336 22-117 (161)
27 PF05743 UEV: UEV domain; Int 97.4 0.00029 6.4E-09 61.0 6.2 98 252-358 2-108 (121)
28 KOG0897 Predicted ubiquitin-co 97.2 0.00018 3.9E-09 62.5 2.2 58 295-359 13-73 (122)
29 KOG3357 Uncharacterized conser 96.4 0.0043 9.4E-08 55.4 4.3 85 244-335 25-119 (167)
30 KOG2391 Vacuolar sorting prote 96.3 0.0075 1.6E-07 60.9 6.2 75 288-370 61-143 (365)
31 PF05773 RWD: RWD domain; Int 95.5 0.045 9.8E-07 44.4 6.5 68 249-317 4-73 (113)
32 smart00591 RWD domain in RING 94.0 0.31 6.8E-06 39.3 7.8 64 254-317 1-65 (107)
33 PF14462 Prok-E2_E: Prokaryoti 87.5 2.6 5.6E-05 37.3 7.3 82 265-352 13-106 (122)
34 PF14457 Prok-E2_A: Prokaryoti 58.7 8.4 0.00018 35.3 2.7 40 297-336 57-102 (162)
35 KOG0309 Conserved WD40 repeat- 44.8 76 0.0016 36.3 7.6 70 246-317 420-491 (1081)
36 KOG4018 Uncharacterized conser 44.1 54 0.0012 31.8 5.7 62 251-315 7-71 (215)
37 cd00421 intradiol_dioxygenase 35.4 49 0.0011 29.3 3.8 26 291-316 64-90 (146)
38 PF06113 BRE: Brain and reprod 34.2 51 0.0011 33.9 4.1 29 291-322 304-332 (333)
39 KOG1047 Bifunctional leukotrie 33.4 29 0.00064 38.0 2.4 60 288-349 248-312 (613)
40 cd03457 intradiol_dioxygenase_ 31.0 61 0.0013 30.3 3.8 26 291-316 85-110 (188)
41 PF10446 DUF2457: Protein of u 26.7 38 0.00083 36.0 1.8 9 42-50 21-29 (458)
42 PF09765 WD-3: WD-repeat regio 25.6 1.8E+02 0.0038 29.2 6.1 60 245-313 98-157 (291)
43 cd03459 3,4-PCD Protocatechuat 25.1 93 0.002 28.3 3.8 25 292-316 72-101 (158)
44 PF06113 BRE: Brain and reprod 23.3 1E+02 0.0022 31.8 4.0 44 275-325 53-96 (333)
45 KOG4445 Uncharacterized conser 23.3 91 0.002 32.0 3.6 27 293-319 45-71 (368)
46 PF11519 DUF3222: Protein of u 20.6 32 0.00069 27.7 -0.1 11 140-150 39-49 (74)
47 cd05845 Ig2_L1-CAM_like Second 20.6 1.9E+02 0.0042 24.1 4.6 26 290-317 16-41 (95)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-34 Score=253.72 Aligned_cols=115 Identities=27% Similarity=0.506 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccC
Q 017425 246 NWAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (372)
Q Consensus 246 ~a~KRL~kElk~L~k~~P~gIsV~p~Ed-di~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 324 (372)
.+.+||++|++.|+++++++|++.+..+ ++++|.++|.||++|||+||.|++.|.||.+||++||+|+|.++ |||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~--i~HPN 82 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTK--IFHPN 82 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccC--CcCCC
Confidence 3899999999999999999999999887 99999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 325 Vy~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
|+.+|+|||++|+ +.|+|+++. |+.+|.+|++++|+|.
T Consensus 83 V~~~G~vCLdIL~-------~~WsP~~~l~sILlsl~slL~~PN~~~Pln~ 126 (153)
T COG5078 83 VDPSGNVCLDILK-------DRWSPVYTLETILLSLQSLLLSPNPDSPLNT 126 (153)
T ss_pred cCCCCCChhHHHh-------CCCCccccHHHHHHHHHHHHcCCCCCCCCCh
Confidence 9999999999998 899999862 4566779999999985
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-34 Score=252.03 Aligned_cols=114 Identities=25% Similarity=0.503 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcC
Q 017425 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 326 (372)
+.+||.+|++.|++++|+||.+.+.++|+++|+|+|.||.|||||||.|++.|.||++||++||+|+|+|+ ||||||+
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk--IyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK--IYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc--cccCCcC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 327 DCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 327 ~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
..|.|||+||+ ..|+|+.+. |+.+|..|++|+|+..
T Consensus 80 ~~G~IclDILk-------~~WsPAl~i~~VllsI~sLL~~PnpddPL~~ 121 (148)
T KOG0417|consen 80 SNGRICLDILK-------DQWSPALTISKVLLSICSLLSDPNPDDPLVP 121 (148)
T ss_pred ccccchHHhhh-------ccCChhhHHHHHHHHHHHHhcCCCCCccccH
Confidence 99999999998 689999762 5667779999999863
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.97 E-value=1.1e-31 Score=238.44 Aligned_cols=114 Identities=26% Similarity=0.540 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcC
Q 017425 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 326 (372)
+.|||++|++.|++.+++||.+.+.++|+..|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+ +|||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~--i~HPNV~ 80 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTK--IYHPNID 80 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecC--CeeceEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 327 DCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 327 ~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
.+|.|||++|+ +.|+|+++. |..+|.+|++++|+|.
T Consensus 81 ~~G~iCl~iL~-------~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~ 122 (152)
T PTZ00390 81 KLGRICLDILK-------DKWSPALQIRTVLLSIQALLSAPEPDDPLDT 122 (152)
T ss_pred CCCeEECccCc-------ccCCCCCcHHHHHHHHHHHHhCCCCCCchHH
Confidence 99999999997 789999862 4456668999999873
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.97 E-value=4.9e-31 Score=232.71 Aligned_cols=114 Identities=29% Similarity=0.542 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcC
Q 017425 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 326 (372)
+.+||++|++.|++++++++.+.+.++|+..|+++|.||++|||+||.|+|.|.||++||+.||+|+|.|+ +|||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPNv~ 79 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK--IYHPNIN 79 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecC--cccceEC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 327 DCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 327 ~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
.+|.|||++|+ +.|+|+++. |..+|..|++++|+|.
T Consensus 80 ~~G~iCl~il~-------~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~ 121 (147)
T PLN00172 80 SNGSICLDILR-------DQWSPALTVSKVLLSISSLLTDPNPDDPLVP 121 (147)
T ss_pred CCCEEEcccCc-------CCCCCcCcHHHHHHHHHHHHhCCCCCCchHH
Confidence 99999999997 789999762 4556668999999874
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=227.25 Aligned_cols=116 Identities=27% Similarity=0.532 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccC
Q 017425 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (372)
Q Consensus 245 s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 324 (372)
..+.+||+++++.|++++|.||+..|.++|+.+|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+. +||||
T Consensus 3 tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~--mFHPN 80 (152)
T KOG0419|consen 3 TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK--MFHPN 80 (152)
T ss_pred chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee--ccCCC
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCcEEecCCCCcCCCCCCCccchhHH-----HHHhhh-CCCCCCCCCc
Q 017425 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKST-----MLQGRR-CPEVTMTMHL 369 (372)
Q Consensus 325 Vy~~GkVCLSLL~TWsG~~~E~WsPa~St-----ILQVLl-sP~~D~~i~~ 369 (372)
||.+|.+||++|. ..|+|.+.. -+|.|+ .|+++.|-|.
T Consensus 81 vya~G~iClDiLq-------NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~ 124 (152)
T KOG0419|consen 81 VYADGSICLDILQ-------NRWSPTYDVASILTSIQSLLNDPNPNSPANS 124 (152)
T ss_pred cCCCCcchHHHHh-------cCCCCchhHHHHHHHHHHHhcCCCCCCcccH
Confidence 9999999999997 599999762 366666 6999998774
No 6
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-30 Score=282.12 Aligned_cols=141 Identities=54% Similarity=0.960 Sum_probs=132.1
Q ss_pred CccccccCCCCCcccccCCcCCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEE
Q 017425 219 KQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFD 298 (372)
Q Consensus 219 kqFd~v~~~sdHhf~~~~~~~~~~s~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fd 298 (372)
+.|++++++++|||.......+ +.+.|++..+.||+.|..++|.||+||.+|++|++++++|+||+||||++|+|+|+
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd 903 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNKA--AEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFD 903 (1101)
T ss_pred ccccccCchHHHhhhhcccccH--HHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEE
Confidence 7899999999999987765532 33389999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCCCCCCeEEEeeCCCccccCcCCCCcEEecCCCCcCCCCCCCccchhHHHHHhhhCCC
Q 017425 299 CIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQGRRCPE 362 (372)
Q Consensus 299 I~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~StILQVLlsP~ 362 (372)
|.||++||..||.|++++++.++|||+|.+|+|||+||+||.|.+.|.|+| .++|||||++.|
T Consensus 904 ~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~-~s~~lq~l~s~q 966 (1101)
T KOG0895|consen 904 FQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNP-SSSILQVLVSIQ 966 (1101)
T ss_pred eecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCc-chhHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999 667999999876
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.96 E-value=1e-28 Score=213.22 Aligned_cols=112 Identities=32% Similarity=0.634 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcCCC
Q 017425 250 KIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC 328 (372)
Q Consensus 250 RL~kElk~L~k~~P~gIsV~p~Ed-di~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 328 (372)
||++|++.|++.++.|+.+.+.++ ++..|+++|.||++|||+||.|+|+|.||.+||++||+|+|.|+ +|||||+.+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~--i~HPni~~~ 78 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTP--IFHPNIDEN 78 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS---SBTTB-TT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccc--ccccccccc
Confidence 899999999999999999999886 99999999999999999999999999999999999999999999 999999999
Q ss_pred CcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 329 GKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 329 GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
|+|||++|+. +.|+|+++. |..+|..|+.+.++|.
T Consensus 79 G~icl~~l~~------~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~ 119 (140)
T PF00179_consen 79 GRICLDILNP------ESWSPSYTIESILLSIQSLLSEPNPEDPLNE 119 (140)
T ss_dssp SBBGHGGGTT------TTC-TTSHHHHHHHHHHHHHHSTCTTSTSSH
T ss_pred ccchhhhhhc------ccCCcccccccHHHHHHHHHhCCCCCCcchH
Confidence 9999999973 569998762 4566778999988874
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.1e-28 Score=210.36 Aligned_cols=124 Identities=26% Similarity=0.433 Sum_probs=109.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEEEe-cCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccc
Q 017425 244 PKNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (372)
Q Consensus 244 ~s~a~KRL~kElk~L~k~~P~gIsV~p-~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 322 (372)
...++|||++|+++|..++|+||.+.| .|+|++.|.|+|.||++|+|+||+|-.++.||.+||..||+++|... +||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~--~fH 79 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE--MFH 79 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc--ccc
Confidence 346899999999999999999998887 57899999999999999999999999999999999999999999988 999
Q ss_pred cCcCCCCcEEecCCCCcC------CCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 323 PNLYDCGKVCLSLLGTWT------GKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 323 PNVy~~GkVCLSLL~TWs------G~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
||||.+|+||++||..-. ....|.|+|.+|+ +..+|-+|+-++.-|.
T Consensus 80 PNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANv 138 (165)
T KOG0426|consen 80 PNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANV 138 (165)
T ss_pred CcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCccc
Confidence 999999999999997422 2367899999873 4556678887776654
No 9
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.95 E-value=2.4e-27 Score=205.26 Aligned_cols=113 Identities=31% Similarity=0.560 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcCCC
Q 017425 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDC 328 (372)
Q Consensus 249 KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~ 328 (372)
|||++|++.|++.++.|+++.+.++++..|+++|.||++|||+||.|+|.|.||++||++||+|+|.++ +|||||+.+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~--i~HpnV~~~ 79 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTK--IYHPNVDEN 79 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCC--cccCCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 329 GKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 329 GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
|.||+++|.. .+|+|+++. |..+|..|+.+.++|.
T Consensus 80 G~icl~~l~~------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ 120 (141)
T cd00195 80 GKICLSILKT------HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNA 120 (141)
T ss_pred CCCchhhcCC------CCcCCcCcHHHHHHHHHHHHhCCCCCCchhH
Confidence 9999999983 259999762 4556668888887763
No 10
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.1e-27 Score=211.87 Aligned_cols=122 Identities=23% Similarity=0.426 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecC-CCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccC
Q 017425 246 NWAKKIQEEWKILEKNLPDTIFVRVCE-ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (372)
Q Consensus 246 ~a~KRL~kElk~L~k~~P~gIsV~p~E-ddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 324 (372)
.+..-|+++|+.|++.+.+|+.+...+ .|++.|.+.|+||++|+|+||.|+..+.||.+||..||+++|.|. +||||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~--mwHPN 82 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSK--MWHPN 82 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehh--hcCCC
Confidence 367788999999999999999998755 599999999999999999999999999999999999999999999 99999
Q ss_pred cCCCCcEEecCCCC-----cC-CCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 325 LYDCGKVCLSLLGT-----WT-GKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 325 Vy~~GkVCLSLL~T-----Ws-G~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
||.+|+||+|||.. |. +...|.|.|.++. |+.+|-.|+..+|-|+
T Consensus 83 vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANV 139 (171)
T KOG0425|consen 83 VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANV 139 (171)
T ss_pred cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccch
Confidence 99999999999963 33 3378999999752 5667778999988775
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.7e-27 Score=213.27 Aligned_cols=113 Identities=27% Similarity=0.530 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHhcC---CCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCcccc
Q 017425 247 WAKKIQEEWKILEKNL---PDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (372)
Q Consensus 247 a~KRL~kElk~L~k~~---P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 323 (372)
+.+||++|.+++..+. -.||.+....+++..+++.|.||+|||||||.|.++|.+|.+|||+||+|+|.|+ ||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk--IwHP 81 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK--IWHP 81 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee--eecC
Confidence 7899999999999887 5789999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcC-CCCcEEecCCCCcCCCCCCCccchhHH-----HHHhhh-CCCCCCCCC
Q 017425 324 NLY-DCGKVCLSLLGTWTGKSTEMWDKNKST-----MLQGRR-CPEVTMTMH 368 (372)
Q Consensus 324 NVy-~~GkVCLSLL~TWsG~~~E~WsPa~St-----ILQVLl-sP~~D~~i~ 368 (372)
||. .+|.|||++|+ ..|.|+++. .+|.|+ +|++.+|+.
T Consensus 82 nVSs~tGaICLDilk-------d~Wa~slTlrtvLislQalL~~pEp~dPqD 126 (200)
T KOG0418|consen 82 NVSSQTGAICLDILK-------DQWAASLTLRTVLISLQALLCAPEPKDPQD 126 (200)
T ss_pred CCCcccccchhhhhh-------cccchhhhHHHHHHHHHHHHcCCCCCChHH
Confidence 998 89999999998 899999752 256555 588888864
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.94 E-value=2.6e-26 Score=199.57 Aligned_cols=113 Identities=28% Similarity=0.570 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCC-CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcCC
Q 017425 249 KKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYD 327 (372)
Q Consensus 249 KRL~kElk~L~k~~P~gIsV~p~Ed-di~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~ 327 (372)
+||++|++.|++.++.|+.|.+.++ ++..|+++|.||.+|||+||.|.|.|.||++||+.||+|+|.++ +|||||+.
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~--i~Hp~i~~ 78 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITK--IYHPNVDS 78 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCC--ceEeeECC
Confidence 5999999999999999999988775 99999999999999999999999999999999999999999999 99999999
Q ss_pred CCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 328 CGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 328 ~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
+|.||+++|.. ++|+|+++. |..+|..|+.+.+.|.
T Consensus 79 ~G~icl~~l~~------~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~ 120 (145)
T smart00212 79 SGEICLDILKQ------EKWSPATTLETVLLSIQSLLSEPNPDSPLNA 120 (145)
T ss_pred CCCEehhhcCC------CCCCCCCcHHHHHHHHHHHHhCCCCCCcccH
Confidence 99999999962 689998652 3455667888887763
No 13
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=202.96 Aligned_cols=117 Identities=25% Similarity=0.493 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCC-----CcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCC
Q 017425 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEA-----RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGL 319 (372)
Q Consensus 245 s~a~KRL~kElk~L~k~~P~gIsV~p~Ed-----di~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~ 319 (372)
..++.||+.|-+.|.++.|.|+++.|... ++..|.|.|.|+.|||||||+|.+.|.||++||+.||+|+|.++
T Consensus 3 ~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p-- 80 (158)
T KOG0424|consen 3 GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP-- 80 (158)
T ss_pred chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC--
Confidence 35789999999999999999999987533 68999999999999999999999999999999999999999999
Q ss_pred ccccCcCCCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCC
Q 017425 320 RLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMH 368 (372)
Q Consensus 320 IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~ 368 (372)
.||||||.+|.|||+||+. ..+|+|+.+. |.++|-+|++.+|-+
T Consensus 81 l~HPNVypsgtVcLsiL~e-----~~~W~paitikqiL~gIqdLL~~Pn~~~pAq 130 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNE-----EKDWRPAITIKQILLGIQDLLDTPNITSPAQ 130 (158)
T ss_pred CcCCCcCCCCcEehhhhcc-----ccCCCchhhHHHHHHHHHHHhcCCCCCCchh
Confidence 9999999999999999983 2459999863 234555788777643
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-25 Score=198.58 Aligned_cols=116 Identities=22% Similarity=0.378 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCcccc
Q 017425 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNP 323 (372)
Q Consensus 244 ~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHP 323 (372)
.....|||+.|+..|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||+.||+|+|.|+ .|||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltp--c~HP 104 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTP--CFHP 104 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecc--ccCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcCCCCcEEecCCCCcCCCCCCCccchhH--HH---HHhhh-CCCCCCCCC
Q 017425 324 NLYDCGKVCLSLLGTWTGKSTEMWDKNKS--TM---LQGRR-CPEVTMTMH 368 (372)
Q Consensus 324 NVy~~GkVCLSLL~TWsG~~~E~WsPa~S--tI---LQVLl-sP~~D~~i~ 368 (372)
||+..|.|||+||. ++|+..+. || +|-|+ +|+-++|||
T Consensus 105 NVD~~GnIcLDILk-------dKWSa~YdVrTILLSiQSLLGEPNn~SPLN 148 (175)
T KOG0421|consen 105 NVDLSGNICLDILK-------DKWSAVYDVRTILLSIQSLLGEPNNSSPLN 148 (175)
T ss_pred CccccccchHHHHH-------HHHHHHHhHHHHHHHHHHHhCCCCCCCcch
Confidence 99999999999998 89999975 22 34444 899999987
No 15
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-24 Score=233.70 Aligned_cols=146 Identities=53% Similarity=0.945 Sum_probs=137.5
Q ss_pred ccCccccccCCCCCcccccCCcCCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEE
Q 017425 217 GFKQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFV 296 (372)
Q Consensus 217 ~FkqFd~v~~~sdHhf~~~~~~~~~~s~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~ 296 (372)
.|..|+.+++.+.||+...+.... ..++.+.+|+++|++.|.+++|+|++|++.+.+|+.++++|.||.||||++|+|.
T Consensus 254 ~i~kf~~~ed~~~~~~~~k~~~~k-~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~ 332 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKKGKSSK-PHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFL 332 (1101)
T ss_pred chhhhccccccccccccccCCCCC-ccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCcee
Confidence 678999999999999998776655 6778899999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCCeEEEeeC-CCccccCcCCCCcEEecCCCCcCCCCCCCccchhHHHHHhhhCCCC
Q 017425 297 FDCIFPPSYPNEPPSVYYYSG-GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQGRRCPEV 363 (372)
Q Consensus 297 fdI~FP~dYP~~PPkV~F~T~-~~IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~StILQVLlsP~~ 363 (372)
|+|+||..||..||.|+++|+ ..+++||+|.+|+|||++|+||.|...+.|+|..++|+|+|+..|-
T Consensus 333 Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~ 400 (1101)
T KOG0895|consen 333 FDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQG 400 (1101)
T ss_pred eEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhh
Confidence 999999999999999999998 6799999999999999999999998899999997889999998764
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.2e-24 Score=186.66 Aligned_cols=113 Identities=28% Similarity=0.533 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhcCCCce-EEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCc
Q 017425 247 WAKKIQEEWKILEKNLPDTI-FVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~gI-sV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 325 (372)
+.+||++|+..|++.....+ -++..+.++..|.+.|+ |.+-||..|.|+++|.||.+|||+||++.|.|+ ||||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tk--iYHpNV 79 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTK--IYHPNV 79 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeee--eccCCC
Confidence 68999999999999887755 35678889999999999 999999999999999999999999999999999 999999
Q ss_pred CCCCcEEecCCCCcCCCCCCCccchhHH--HHHhhh----CCCCCCCCC
Q 017425 326 YDCGKVCLSLLGTWTGKSTEMWDKNKST--MLQGRR----CPEVTMTMH 368 (372)
Q Consensus 326 y~~GkVCLSLL~TWsG~~~E~WsPa~St--ILQVLl----sP~~D~~i~ 368 (372)
++.|.|||.||.+ |+|.|+++| ++|.|+ .|++..|++
T Consensus 80 De~gqvClPiis~------EnWkP~T~teqVlqaLi~liN~P~pe~plr 122 (153)
T KOG0422|consen 80 DEKGQVCLPIISA------ENWKPATRTEQVLQALIALINDPEPEHPLR 122 (153)
T ss_pred CCCCceeeeeeec------ccccCcccHHHHHHHHHHHhcCCCccccch
Confidence 9999999999985 999999864 455444 577877775
No 17
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=188.94 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=104.6
Q ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccc
Q 017425 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (372)
Q Consensus 243 s~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 322 (372)
+.+++.|||+||++.|.+++++.|.++|.++||.+|+-+|.||++|||+||.|+..|.||++||++||.|++.|++++|-
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cCcCCCCcEEecCCCCcCCCCCCCccchhH--HHHHhhhCCCCCC
Q 017425 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKS--TMLQGRRCPEVTM 365 (372)
Q Consensus 323 PNVy~~GkVCLSLL~TWsG~~~E~WsPa~S--tILQVLlsP~~D~ 365 (372)
+| -++|||+-. .+++.|+|+++ +||..|++--++.
T Consensus 82 tn----tRLCLSiSD----fHPdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 82 TN----TRLCLSISD----FHPDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred cC----ceEEEeccc----cCcCcCCCcccHHHHHHHHHHHHhcC
Confidence 88 699999876 46789999975 6888887654443
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.3e-22 Score=174.68 Aligned_cols=101 Identities=26% Similarity=0.497 Sum_probs=94.7
Q ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccc
Q 017425 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (372)
Q Consensus 243 s~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 322 (372)
....+.+|||||+.+|+.++|.|+.++ ..+++..|.+-+.|.+||.|+|.+|.+.+.||+.||+..|+|.|..+ ...|
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~-~P~H 89 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP-APLH 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-CCCC
Confidence 456789999999999999999999888 56689999999999999999999999999999999999999999987 5789
Q ss_pred cCcCCCCcEEecCCCCcCCCCCCCccchhH
Q 017425 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKS 352 (372)
Q Consensus 323 PNVy~~GkVCLSLL~TWsG~~~E~WsPa~S 352 (372)
|+||.+|.|||+||. +.|+|+.+
T Consensus 90 PHiYSNGHICL~iL~-------d~WsPAms 112 (161)
T KOG0427|consen 90 PHIYSNGHICLDILY-------DSWSPAMS 112 (161)
T ss_pred CceecCCeEEEEeec-------ccCCcchh
Confidence 999999999999997 89999986
No 19
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.1e-22 Score=181.98 Aligned_cols=110 Identities=22% Similarity=0.430 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcC
Q 017425 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLY 326 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy 326 (372)
.-|||..++..|..+ +..|....+.+..+.|.+.||.+|||+||.++++|.+|++||++.|.|.|.++ ||||||+
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnK--IfHPNID 78 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNK--IFHPNID 78 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceee--ccCCCch
Confidence 358999999888765 56888999999999999999999999999999999999999999999999999 9999999
Q ss_pred -CCCcEEecCCCCcCCCCCCCccchhH-------HHHHhhhCCCCCCCCC
Q 017425 327 -DCGKVCLSLLGTWTGKSTEMWDKNKS-------TMLQGRRCPEVTMTMH 368 (372)
Q Consensus 327 -~~GkVCLSLL~TWsG~~~E~WsPa~S-------tILQVLlsP~~D~~i~ 368 (372)
.+|.|||+.|+ ..|+|.+. .+-|+|..|++-+|||
T Consensus 79 e~SGsVCLDViN-------QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN 121 (189)
T KOG0416|consen 79 EASGSVCLDVIN-------QTWSPLYDLVNIFETFLPQLLRYPNPSDPLN 121 (189)
T ss_pred hccCccHHHHHh-------hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcc
Confidence 89999999998 68999975 2569999999999998
No 20
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8e-23 Score=185.44 Aligned_cols=119 Identities=29% Similarity=0.521 Sum_probs=110.6
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCcc
Q 017425 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRL 321 (372)
Q Consensus 242 ~s~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~If 321 (372)
..+....|.|.+|++.|...+|.||.|.+.+++...+.+.|.||.||||++|+|+..+.+..+||++||+-+|+|+ ||
T Consensus 6 nlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTK--IF 83 (223)
T KOG0423|consen 6 NLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTK--IF 83 (223)
T ss_pred CCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeee--ec
Confidence 3466789999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccCcCCCCcEEecCCCCcCCCCCCCccchhH------HHHHhhhCCCCCCCCCc
Q 017425 322 NPNLYDCGKVCLSLLGTWTGKSTEMWDKNKS------TMLQGRRCPEVTMTMHL 369 (372)
Q Consensus 322 HPNVy~~GkVCLSLL~TWsG~~~E~WsPa~S------tILQVLlsP~~D~~i~~ 369 (372)
||||-.+|.||.+.|. ..|+|... +|..+|+.|+|++.+|.
T Consensus 84 HPNVaaNGEICVNtLK-------kDW~p~LGirHvLltikCLLI~PnPESALNE 130 (223)
T KOG0423|consen 84 HPNVAANGEICVNTLK-------KDWNPSLGIRHVLLTIKCLLIEPNPESALNE 130 (223)
T ss_pred cCCcccCceehhhhhh-------cccCcccchhhHhhhhheeeecCChHHHHhH
Confidence 9999999999999998 79999853 45667889999999875
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.3e-22 Score=178.64 Aligned_cols=116 Identities=24% Similarity=0.360 Sum_probs=94.1
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEE--ecCCCcc--eEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeC
Q 017425 242 KPPKNWAKKIQEEWKILEKNLPDTIFVR--VCEARME--LLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (372)
Q Consensus 242 ~s~s~a~KRL~kElk~L~k~~P~gIsV~--p~Eddi~--~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 317 (372)
...+.++.||++++.+| ++|++++.. ...++.. .+.++|. |.++.|+||.|.|.+.+|+.||+.||+|+|.|+
T Consensus 24 ~~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 45667777887777665 567776532 2233333 5888887 999999999999999999999999999999999
Q ss_pred CCccccCcCCCCcEEecCCCCcCCCCCCCccchhHH------HHHhhhCCCCCCCCCc
Q 017425 318 GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKST------MLQGRRCPEVTMTMHL 369 (372)
Q Consensus 318 ~~IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~St------ILQVLlsP~~D~~i~~ 369 (372)
+|||||+.+|.|||+||+ +.|+|+.+. +..++++|++++|||-
T Consensus 101 --V~HPNId~~GnVCLnILR-------edW~P~lnL~sIi~GL~~LF~epn~eDpLN~ 149 (184)
T KOG0420|consen 101 --VYHPNIDLDGNVCLNILR-------EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNK 149 (184)
T ss_pred --cccCCcCCcchHHHHHHH-------hcCccccchHHHHHHHHHHhccCCCcccccH
Confidence 999999999999999998 899999652 3445668999999983
No 22
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.9e-18 Score=159.59 Aligned_cols=107 Identities=23% Similarity=0.399 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccC
Q 017425 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPN 324 (372)
Q Consensus 245 s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPN 324 (372)
+.+.|||++|.++|+ ++..-+...+.|+|+++|+.+|.||.+|-|+||+|+.+|.||.+||++||.+..+|++++|--|
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~n 88 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVN 88 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeC
Confidence 458999999999998 6666777889999999999999999999999999999999999999999999999998888766
Q ss_pred cCCCCcEEecCCCCcCCCCCCCccchhHHHHHhhhCC
Q 017425 325 LYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQGRRCP 361 (372)
Q Consensus 325 Vy~~GkVCLSLL~TWsG~~~E~WsPa~StILQVLlsP 361 (372)
-+|||||-+ .++|.|.|++| |++.|+++
T Consensus 89 ----kKiCLSISg----yHPEtWqPSWS-iRTALlAl 116 (314)
T KOG0428|consen 89 ----KKICLSISG----YHPETWQPSWS-IRTALLAL 116 (314)
T ss_pred ----ceEEEEecC----CCccccCcchh-HHHHHHHH
Confidence 699999864 57899999997 66665544
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.2e-12 Score=123.19 Aligned_cols=104 Identities=20% Similarity=0.328 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCC--CCCeEEEeeCCCccccCcC
Q 017425 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN--EPPSVYYYSGGLRLNPNLY 326 (372)
Q Consensus 249 KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~--~PPkV~F~T~~~IfHPNVy 326 (372)
-.|..|+..+.+..-+||+|.|.-.+-++|.++|++..| .|.||.|+|.|.+|.+||. .-|+|.|.+. +|||+|.
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~--vfHP~ic 98 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQS--VFHPLIC 98 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeecc--ccccccC
Confidence 446777777888888999999999999999999998887 6999999999999999994 5899999999 9999998
Q ss_pred -CCCcEEecCCCCcCCCCCCCccchhHHHHHhhhCCC
Q 017425 327 -DCGKVCLSLLGTWTGKSTEMWDKNKSTMLQGRRCPE 362 (372)
Q Consensus 327 -~~GkVCLSLL~TWsG~~~E~WsPa~StILQVLlsP~ 362 (372)
.++.+||+-.- ..|+-....|+|||+.+|
T Consensus 99 p~skeLdl~raf-------~eWRk~ehhiwqvL~ylq 128 (258)
T KOG0429|consen 99 PKSKELDLNRAF-------PEWRKEEHHIWQVLVYLQ 128 (258)
T ss_pred CCccceeHhhhh-------hhhhccccHHHHHHHHHH
Confidence 78999998765 348888888999988665
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.7e-08 Score=87.84 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcCCCc-eEEEecC-CC--cceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccc
Q 017425 247 WAKKIQEEWKILEKNLPDT-IFVRVCE-AR--MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (372)
Q Consensus 247 a~KRL~kElk~L~k~~P~g-IsV~p~E-dd--i~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 322 (372)
+.-||.+|+..=++..-++ ++..... ++ +..|.++|.||+.|+||+.+|.+.|..-++||..||.|+|.++ +--
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk--inm 83 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK--INM 83 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE--eee
Confidence 4467888888877766655 3443333 23 5679999999999999999999999999999999999999998 655
Q ss_pred cCcC-CCCcE
Q 017425 323 PNLY-DCGKV 331 (372)
Q Consensus 323 PNVy-~~GkV 331 (372)
+-|. .+|.|
T Consensus 84 ~gvn~~~g~V 93 (138)
T KOG0896|consen 84 NGVNSSNGVV 93 (138)
T ss_pred cccccCCCcc
Confidence 6665 45555
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.71 E-value=7.7e-05 Score=64.97 Aligned_cols=55 Identities=33% Similarity=0.657 Sum_probs=46.2
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEeeCC-CccccCcCCCCcEEe---cCCCCcCCCCCCCccchhH
Q 017425 291 HDGLFVFDCIFPPSYPNEPPSVYYYSGG-LRLNPNLYDCGKVCL---SLLGTWTGKSTEMWDKNKS 352 (372)
Q Consensus 291 eGGlF~fdI~FP~dYP~~PPkV~F~T~~-~IfHPNVy~~GkVCL---SLL~TWsG~~~E~WsPa~S 352 (372)
.|+.|.+.|.||+.||..||.|....+. +.+-|||+.+|.+|+ .+.- ..|.|...
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------D~~~P~~~ 92 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------DPWDPEGI 92 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------CccCHHHH
Confidence 7899999999999999999999987652 237899999999999 4443 78999864
No 26
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.48 E-value=6.9e-05 Score=67.36 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcE----------EEEEEECCCCCCCCCCeEE
Q 017425 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL----------FVFDCIFPPSYPNEPPSVY 313 (372)
Q Consensus 244 ~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGl----------F~fdI~FP~dYP~~PPkV~ 313 (372)
...|..||..|++.|.+ +|.....+-..|.-+=.-+.||-|.|-+ |.|++.+|..||..||.+.
T Consensus 22 ~~~W~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 22 GDLWVQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp CHHHHHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCccee
Confidence 36799999999999865 1222211112232222345555555433 4455667999999999998
Q ss_pred EeeCCCccccCcCCCCcEEecCC
Q 017425 314 YYSGGLRLNPNLYDCGKVCLSLL 336 (372)
Q Consensus 314 F~T~~~IfHPNVy~~GkVCLSLL 336 (372)
...-.+ --.-.|..|+|||++-
T Consensus 96 lPeLdG-KTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 96 LPELDG-KTAKMYRGGKICLTDH 117 (161)
T ss_dssp -GGGTT-T-SSBCCCCBB---TT
T ss_pred ccccCC-chhhhhcCceEeeecc
Confidence 754211 2456788999999754
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.45 E-value=0.00029 Score=61.00 Aligned_cols=98 Identities=19% Similarity=0.324 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCCceEEE----ecCCCcceEEEEEECCCCCCCCCcEEE--EEEECCCCCCCCCCeEEEeeC---CCccc
Q 017425 252 QEEWKILEKNLPDTIFVR----VCEARMELLRAVMIGPSGTPYHDGLFV--FDCIFPPSYPNEPPSVYYYSG---GLRLN 322 (372)
Q Consensus 252 ~kElk~L~k~~P~gIsV~----p~Eddi~~W~vvI~GP~gTPYeGGlF~--fdI~FP~dYP~~PPkV~F~T~---~~IfH 322 (372)
.+|+..+.+.-+ .+..+ ..++........+.|----.|+|..|. +.|.||.+||..||.|..... .+.-+
T Consensus 2 ~~d~~~~l~~y~-~L~p~~~~ft~~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~ 80 (121)
T PF05743_consen 2 FNDVLSVLQNYP-SLRPRTDTFTFNDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPS 80 (121)
T ss_dssp HHHHHHHHHHST-TEEEEEEEEESTTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGC
T ss_pred HHHHHHHHHHCC-CCcEeeeeeEcCCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCC
Confidence 355666555544 33222 233322222223333222358888885 667789999999999987543 23345
Q ss_pred cCcCCCCcEEecCCCCcCCCCCCCccchhHHHHHhh
Q 017425 323 PNLYDCGKVCLSLLGTWTGKSTEMWDKNKSTMLQGR 358 (372)
Q Consensus 323 PNVy~~GkVCLSLL~TWsG~~~E~WsPa~StILQVL 358 (372)
.+|+.+|+|.+..|. .|++..+.+++++
T Consensus 81 ~~Vd~~G~v~~pyL~--------~W~~~~s~L~~lv 108 (121)
T PF05743_consen 81 HHVDSNGRVYLPYLQ--------NWNPPSSNLVDLV 108 (121)
T ss_dssp CCB-TTSBB-SHHHH--------T--TTTS-HHHHH
T ss_pred CeECCCCCEeCchhc--------cCCCCCCCHHHHH
Confidence 599999999999996 5666444444433
No 28
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00018 Score=62.50 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=41.5
Q ss_pred EEEEEECCCCCCCCCCeEEEeeCCCccccCcCCCCcEEecCCCCcCCCCCCCccchhH---HHHHhhh
Q 017425 295 FVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKS---TMLQGRR 359 (372)
Q Consensus 295 F~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~S---tILQVLl 359 (372)
..+.+.|+.+||+.||.++...+. +-.--|-.+|.||+.||.+ ++|+.+++ +++|+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~-~~~Gyvl~ggAIcmellt~------qgwssay~Ve~vi~qiaa 73 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPL-EDEGYVLEGGAICMELLTK------QGWSSAYEVERVIMQIAA 73 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeec-ccCCEEecchhhHHHHHcc------ccccchhhHHHHHHHHHH
Confidence 346678999999999999865541 1111223689999999985 89999875 3556543
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.0043 Score=55.42 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcE--------EEEE--EECCCCCCCCCCeEE
Q 017425 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL--------FVFD--CIFPPSYPNEPPSVY 313 (372)
Q Consensus 244 ~s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGl--------F~fd--I~FP~dYP~~PPkV~ 313 (372)
...|..||..|++.|.+ +|....++-..|.-+=.-++||-|-|-+ |.|+ +.+|-.||..+|.+.
T Consensus 25 ~~~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 25 GDLWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred chHHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 45799999999999875 2333333334454444668888887755 4454 456999999999987
Q ss_pred EeeCCCccccCcCCCCcEEecC
Q 017425 314 YYSGGLRLNPNLYDCGKVCLSL 335 (372)
Q Consensus 314 F~T~~~IfHPNVy~~GkVCLSL 335 (372)
...-.+ -.--.|..|+|||.-
T Consensus 99 lpeldg-ktakmyrggkiclt~ 119 (167)
T KOG3357|consen 99 LPELDG-KTAKMYRGGKICLTD 119 (167)
T ss_pred ccccCc-hhhhhhcCceEeecc
Confidence 633110 133567889999963
No 30
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0075 Score=60.92 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCCcEEE--EEEECCCCCCCCCCeEEEeeC---CCccccCcCCCCcEEecCCCCcCCCCCCCccchhH---HHHHhhh
Q 017425 288 TPYHDGLFV--FDCIFPPSYPNEPPSVYYYSG---GLRLNPNLYDCGKVCLSLLGTWTGKSTEMWDKNKS---TMLQGRR 359 (372)
Q Consensus 288 TPYeGGlF~--fdI~FP~dYP~~PPkV~F~T~---~~IfHPNVy~~GkVCLSLL~TWsG~~~E~WsPa~S---tILQVLl 359 (372)
.+|.|.+|- +.|.+++.||+.||.|..... ....|-+|+.+|+|.|..|. .|.|..+ .++|+|+
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------NWDPPSSDLVGLIQELI 132 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------cCCCccchHHHHHHHHH
Confidence 589998887 456679999999999976432 12348999999999999997 6777654 3678877
Q ss_pred CCCCCCCCCcC
Q 017425 360 CPEVTMTMHLS 370 (372)
Q Consensus 360 sP~~D~~i~~s 370 (372)
+..-+.+--+|
T Consensus 133 a~f~~~pP~ys 143 (365)
T KOG2391|consen 133 AAFSEDPPVYS 143 (365)
T ss_pred HHhcCCCcccc
Confidence 66555554444
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.53 E-value=0.045 Score=44.43 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeC
Q 017425 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIG--PSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (372)
Q Consensus 249 KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~G--P~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 317 (372)
.+...|+..|+.--+..+ ..........+.+.+.+ ...+.-....+.+.|.||++||..||.|.+.+.
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 467889999988766555 22333344556666632 233444556899999999999999999998775
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.04 E-value=0.31 Score=39.29 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCceEEEecCCCcceEEEEEECCCC-CCCCCcEEEEEEECCCCCCCCCCeEEEeeC
Q 017425 254 EWKILEKNLPDTIFVRVCEARMELLRAVMIGPSG-TPYHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (372)
Q Consensus 254 Elk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~g-TPYeGGlF~fdI~FP~dYP~~PPkV~F~T~ 317 (372)
|+..|+.-.+..+.......+...+.+.+..+.. ..-+.-.+.+.|.||.+||..+|.|.+.+.
T Consensus 1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ChHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECC
Confidence 3445555555443332222222244444432211 123445688999999999999999988764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=87.50 E-value=2.6 Score=37.27 Aligned_cols=82 Identities=18% Similarity=0.381 Sum_probs=50.1
Q ss_pred ceEEEecCCCcceEEEEEEC--CCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCcCCCCcE--EecCCC---
Q 017425 265 TIFVRVCEARMELLRAVMIG--PSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNLYDCGKV--CLSLLG--- 337 (372)
Q Consensus 265 gIsV~p~Eddi~~W~vvI~G--P~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNVy~~GkV--CLSLL~--- 337 (372)
|+.+....+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|-+.|..+.+.. . ..|.| |-....
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~--~--~G~~iP~~~~~~~~~~ 87 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKL--A--DGGPIPNAAEVTQTFD 87 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEc--c--CCCcCCchhcchhhcC
Confidence 5555544333344543 443 3455699999999999999999999988876653211 0 22334 444333
Q ss_pred --C---cCCCCCCCccchhH
Q 017425 338 --T---WTGKSTEMWDKNKS 352 (372)
Q Consensus 338 --T---WsG~~~E~WsPa~S 352 (372)
+ || .+...|+|...
T Consensus 88 G~~wQrWS-RH~~~W~P~~D 106 (122)
T PF14462_consen 88 GRTWQRWS-RHNNPWRPGVD 106 (122)
T ss_pred Ceeeeeec-CCCCCCCCCCC
Confidence 2 33 23678999754
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=58.66 E-value=8.4 Score=35.31 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=30.9
Q ss_pred EEEECCCCCCCCCCeEEEeeCCCcc-ccCcCCC-----CcEEecCC
Q 017425 297 FDCIFPPSYPNEPPSVYYYSGGLRL-NPNLYDC-----GKVCLSLL 336 (372)
Q Consensus 297 fdI~FP~dYP~~PPkV~F~T~~~If-HPNVy~~-----GkVCLSLL 336 (372)
|.|.|+..||..+|.|.+.-..+.- +||++.. ..+||-.-
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~ 102 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEG 102 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecC
Confidence 5688999999999988887664544 4888765 67999654
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.79 E-value=76 Score=36.29 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCC-cEEEEEEECCCCCCCC-CCeEEEeeC
Q 017425 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHD-GLFVFDCIFPPSYPNE-PPSVYYYSG 317 (372)
Q Consensus 246 ~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeG-GlF~fdI~FP~dYP~~-PPkV~F~T~ 317 (372)
.....|.+|+..+-...+ .+.+.-..---....+.+.||--.- .| ...++.|.||.+||.. ||.+.|..+
T Consensus 420 ~~pQnLgeE~S~Ig~k~~-nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 420 TLPQNLGEEFSLIGVKIR-NVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhhHHhHHhHhhcccc-ccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345667778777755443 3323211111134455666654332 22 2346788999999985 899998643
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=44.08 E-value=54 Score=31.76 Aligned_cols=62 Identities=19% Similarity=0.358 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCce-EEEecCCCcceEEEEEECCCCC--CCCCcEEEEEEECCCCCCCCCCeEEEe
Q 017425 251 IQEEWKILEKNLPDTI-FVRVCEARMELLRAVMIGPSGT--PYHDGLFVFDCIFPPSYPNEPPSVYYY 315 (372)
Q Consensus 251 L~kElk~L~k~~P~gI-sV~p~Eddi~~W~vvI~GP~gT--PYeGGlF~fdI~FP~dYP~~PPkV~F~ 315 (372)
..+|+..|+...|.-+ .+.- .+...+.+.|.--.+. -|.| .|.+.+.++.+||..||.+.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i~~--~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHINS--EDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhhhc--cCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceecc
Confidence 4556666766555433 2221 1222255555422221 1332 7899999999999999999543
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=35.36 E-value=49 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.754 Sum_probs=23.2
Q ss_pred CCcEEEEEEECCCCCC-CCCCeEEEee
Q 017425 291 HDGLFVFDCIFPPSYP-NEPPSVYYYS 316 (372)
Q Consensus 291 eGGlF~fdI~FP~dYP-~~PPkV~F~T 316 (372)
+.|.|.|.-.+|-.|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 4589999999999999 9999999964
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=34.25 E-value=51 Score=33.87 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.3
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEeeCCCccc
Q 017425 291 HDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLN 322 (372)
Q Consensus 291 eGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfH 322 (372)
.+-.|.+.|.+|..||...|.+.|.+ +||
T Consensus 304 ~~F~flvHi~Lp~~FP~~qP~ltlqS---~yH 332 (333)
T PF06113_consen 304 GDFTFLVHISLPIQFPKDQPSLTLQS---VYH 332 (333)
T ss_pred CCeEEEEEEeccCCCCCcCCeEEEEe---ecc
Confidence 34458888899999999999999988 466
No 39
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=33.37 E-value=29 Score=37.95 Aligned_cols=60 Identities=23% Similarity=0.568 Sum_probs=41.5
Q ss_pred CCCCCcEEEEEEECCCCCCC---CCCeEEEeeCCCccccCcCCCCcEEecCCCCcCCC--CCCCccc
Q 017425 288 TPYHDGLFVFDCIFPPSYPN---EPPSVYYYSGGLRLNPNLYDCGKVCLSLLGTWTGK--STEMWDK 349 (372)
Q Consensus 288 TPYeGGlF~fdI~FP~dYP~---~PPkV~F~T~~~IfHPNVy~~GkVCLSLL~TWsG~--~~E~WsP 349 (372)
+||.=|.|-+ +.+|+.||+ +-|-+.|.|+.++-+=+-. --.||..|-..|.|. -+..|.-
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpTllaGDrsl-~~vIaHEIAHSWtGNlVTN~sWeh 312 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPTLLAGDRSL-VDVIAHEIAHSWTGNLVTNASWEH 312 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecchhhcCCcch-hhHHHHHhhhhhcccccccCccch
Confidence 4677788875 557999997 5899999998654433221 125888888889886 4455543
No 40
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=30.98 E-value=61 Score=30.34 Aligned_cols=26 Identities=31% Similarity=0.665 Sum_probs=23.4
Q ss_pred CCcEEEEEEECCCCCCCCCCeEEEee
Q 017425 291 HDGLFVFDCIFPPSYPNEPPSVYYYS 316 (372)
Q Consensus 291 eGGlF~fdI~FP~dYP~~PPkV~F~T 316 (372)
+.|.|.|.=.||--||..||.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 56899999999999999999999964
No 41
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=26.72 E-value=38 Score=36.03 Aligned_cols=9 Identities=33% Similarity=-0.042 Sum_probs=4.0
Q ss_pred cccCCcccc
Q 017425 42 LDKGKKKIC 50 (372)
Q Consensus 42 ~~k~k~~~~ 50 (372)
..|.|-++-
T Consensus 21 ~~~~KlTi~ 29 (458)
T PF10446_consen 21 DYKRKLTIN 29 (458)
T ss_pred cccccccHH
Confidence 344444443
No 42
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=25.62 E-value=1.8e+02 Score=29.20 Aligned_cols=60 Identities=13% Similarity=0.333 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCceEEEecCCCcceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEE
Q 017425 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVY 313 (372)
Q Consensus 245 s~a~KRL~kElk~L~k~~P~gIsV~p~Eddi~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~ 313 (372)
....++|.+|+..+..+.. +.+. ...++..++..+.. . .....++|.+|.+||..||.+.
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEEC
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceee
Confidence 4567899999999977543 2222 24466777777772 1 2577899999999999999754
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=25.10 E-value=93 Score=28.34 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.5
Q ss_pred CcEEEEEEECCCCCC-----CCCCeEEEee
Q 017425 292 DGLFVFDCIFPPSYP-----NEPPSVYYYS 316 (372)
Q Consensus 292 GGlF~fdI~FP~dYP-----~~PPkV~F~T 316 (372)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999964
No 44
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=23.33 E-value=1e+02 Score=31.81 Aligned_cols=44 Identities=23% Similarity=0.576 Sum_probs=34.4
Q ss_pred cceEEEEEECCCCCCCCCcEEEEEEECCCCCCCCCCeEEEeeCCCccccCc
Q 017425 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPSVYYYSGGLRLNPNL 325 (372)
Q Consensus 275 i~~W~vvI~GP~gTPYeGGlF~fdI~FP~dYP~~PPkV~F~T~~~IfHPNV 325 (372)
.+.++..| ||.|-..+-+|.|-..||..||-+.|..-. -|+|..
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~-~F~pd~ 96 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDD-NFLPDP 96 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCc-CcCCCh
Confidence 44555554 599999999999999999999999996321 488853
No 45
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.31 E-value=91 Score=32.04 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.5
Q ss_pred cEEEEEEECCCCCCCCCCeEEEeeCCC
Q 017425 293 GLFVFDCIFPPSYPNEPPSVYYYSGGL 319 (372)
Q Consensus 293 GlF~fdI~FP~dYP~~PPkV~F~T~~~ 319 (372)
-.|.+.+..++.||...|+|....+++
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPRG 71 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPRG 71 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCCC
Confidence 478899999999999999999976643
No 46
>PF11519 DUF3222: Protein of unknown function (DUF3222); InterPro: IPR021599 This family of proteins with unknown function appears to be restricted to Rhodopseudomonas. ; PDB: 2JS3_B.
Probab=20.63 E-value=32 Score=27.73 Aligned_cols=11 Identities=45% Similarity=0.903 Sum_probs=6.7
Q ss_pred ccccccccccc
Q 017425 140 EASLPWLKDIA 150 (372)
Q Consensus 140 e~~~pw~~~~~ 150 (372)
.|+|||||.-.
T Consensus 39 ~asvpwl~tgd 49 (74)
T PF11519_consen 39 NASVPWLQTGD 49 (74)
T ss_dssp S-EEETTS--S
T ss_pred CCcChhhhcCc
Confidence 58999999653
No 47
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.60 E-value=1.9e+02 Score=24.07 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCCcEEEEEEECCCCCCCCCCeEEEeeC
Q 017425 290 YHDGLFVFDCIFPPSYPNEPPSVYYYSG 317 (372)
Q Consensus 290 YeGGlF~fdI~FP~dYP~~PPkV~F~T~ 317 (372)
-+|..+.|...-|..|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778889999999999 599999865
Done!