Query 017428
Match_columns 371
No_of_seqs 384 out of 3327
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02244 tocopherol O-methyltr 100.0 1.4E-37 3E-42 291.6 32.2 280 90-371 52-331 (340)
2 PF02353 CMAS: Mycolic acid cy 100.0 2E-28 4.3E-33 221.3 18.6 257 94-369 5-268 (273)
3 COG2230 Cfa Cyclopropane fatty 100.0 2.3E-27 4.9E-32 210.9 23.2 256 94-369 15-274 (283)
4 COG2226 UbiE Methylase involve 100.0 3.7E-27 8E-32 206.2 19.7 207 88-323 9-229 (238)
5 PF01209 Ubie_methyltran: ubiE 99.9 3E-27 6.5E-32 209.2 9.4 207 88-323 5-225 (233)
6 PLN02233 ubiquinone biosynthes 99.9 7.6E-24 1.6E-28 191.6 21.1 163 159-322 74-252 (261)
7 KOG1540 Ubiquinone biosynthesi 99.9 8.3E-24 1.8E-28 181.3 19.0 211 81-320 51-284 (296)
8 PTZ00098 phosphoethanolamine N 99.9 2.1E-22 4.5E-27 182.5 21.5 191 105-328 19-212 (263)
9 PLN02396 hexaprenyldihydroxybe 99.9 6.2E-22 1.3E-26 182.7 20.0 157 158-318 131-289 (322)
10 TIGR02752 MenG_heptapren 2-hep 99.9 8.1E-22 1.7E-26 175.9 20.1 205 89-322 4-222 (231)
11 PRK11705 cyclopropane fatty ac 99.9 1.4E-21 3E-26 185.5 21.5 205 93-324 110-318 (383)
12 PLN02336 phosphoethanolamine N 99.9 1.5E-20 3.3E-25 185.1 22.0 166 143-325 256-421 (475)
13 PRK11036 putative S-adenosyl-L 99.9 6E-21 1.3E-25 172.7 16.9 171 140-318 32-207 (255)
14 smart00828 PKS_MT Methyltransf 99.9 4.9E-20 1.1E-24 163.7 18.7 150 160-325 1-151 (224)
15 PRK05785 hypothetical protein; 99.8 9.4E-20 2E-24 161.3 19.3 197 89-323 8-216 (226)
16 PRK00216 ubiE ubiquinone/menaq 99.8 1.7E-19 3.6E-24 161.7 20.9 172 143-323 41-230 (239)
17 PRK14103 trans-aconitate 2-met 99.8 8.6E-20 1.9E-24 165.2 18.5 163 138-315 14-181 (255)
18 PRK10258 biotin biosynthesis p 99.8 2.5E-19 5.3E-24 161.9 20.0 164 137-321 26-189 (251)
19 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.9E-20 8.4E-25 159.1 13.4 156 158-319 59-216 (243)
20 PRK15068 tRNA mo(5)U34 methylt 99.8 2E-19 4.3E-24 167.2 18.9 156 159-322 123-278 (322)
21 PLN02490 MPBQ/MSBQ methyltrans 99.8 1.4E-19 3.1E-24 167.5 16.6 146 158-321 113-259 (340)
22 PRK08317 hypothetical protein; 99.8 4.3E-18 9.3E-23 152.4 24.5 175 143-327 9-185 (241)
23 TIGR00452 methyltransferase, p 99.8 7.6E-19 1.6E-23 161.5 19.7 168 142-322 110-277 (314)
24 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 8.5E-19 1.8E-23 155.4 19.4 199 93-322 2-214 (223)
25 PRK11873 arsM arsenite S-adeno 99.8 2.6E-18 5.6E-23 157.1 20.9 153 158-319 77-231 (272)
26 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.9E-18 6.2E-23 154.3 18.4 150 159-314 57-226 (247)
27 PF13489 Methyltransf_23: Meth 99.8 2.9E-19 6.3E-24 150.0 10.9 136 158-315 22-160 (161)
28 PF13847 Methyltransf_31: Meth 99.8 4.1E-19 8.8E-24 148.0 11.2 106 158-265 3-112 (152)
29 TIGR00740 methyltransferase, p 99.8 2.1E-18 4.5E-23 154.6 15.7 152 158-315 53-224 (239)
30 PRK11207 tellurite resistance 99.8 5.5E-18 1.2E-22 147.1 17.6 137 159-317 31-169 (197)
31 KOG1270 Methyltransferases [Co 99.8 2.2E-19 4.7E-24 155.3 7.8 152 159-317 90-248 (282)
32 PF08241 Methyltransf_11: Meth 99.8 8.6E-19 1.9E-23 133.5 9.4 95 163-261 1-95 (95)
33 PF12847 Methyltransf_18: Meth 99.8 2.1E-18 4.6E-23 135.9 11.8 105 158-263 1-111 (112)
34 TIGR02716 C20_methyl_CrtF C-20 99.8 2.1E-17 4.4E-22 153.6 20.2 164 143-317 139-305 (306)
35 PRK01683 trans-aconitate 2-met 99.8 2.9E-17 6.3E-22 149.0 20.0 163 138-313 16-182 (258)
36 TIGR00477 tehB tellurite resis 99.8 3.1E-17 6.8E-22 142.1 16.7 136 159-317 31-168 (195)
37 KOG4300 Predicted methyltransf 99.8 1.4E-17 3E-22 138.7 13.4 155 159-322 77-236 (252)
38 TIGR02072 BioC biotin biosynth 99.8 9.6E-17 2.1E-21 143.7 19.6 143 159-320 35-178 (240)
39 PRK00107 gidB 16S rRNA methylt 99.7 3.1E-16 6.8E-21 134.1 19.0 127 159-322 46-173 (187)
40 PRK05134 bifunctional 3-demeth 99.7 3.5E-16 7.6E-21 139.7 19.5 155 158-318 48-205 (233)
41 COG4106 Tam Trans-aconitate me 99.7 3.7E-17 7.9E-22 137.3 11.8 156 137-313 14-181 (257)
42 TIGR02021 BchM-ChlM magnesium 99.7 1.2E-16 2.6E-21 141.3 15.6 166 140-322 40-210 (219)
43 PRK07580 Mg-protoporphyrin IX 99.7 1.8E-16 4E-21 141.2 16.0 151 158-322 63-218 (230)
44 PF08003 Methyltransf_9: Prote 99.7 2.4E-16 5.3E-21 140.5 15.7 157 158-322 115-271 (315)
45 PRK12335 tellurite resistance 99.7 3.4E-16 7.3E-21 143.9 17.1 136 159-317 121-258 (287)
46 PLN02585 magnesium protoporphy 99.7 1.7E-15 3.8E-20 139.5 20.3 146 158-320 144-301 (315)
47 TIGR01983 UbiG ubiquinone bios 99.7 1.1E-15 2.5E-20 135.6 17.7 155 158-318 45-203 (224)
48 TIGR00138 gidB 16S rRNA methyl 99.7 2E-15 4.3E-20 128.9 17.9 99 159-263 43-142 (181)
49 TIGR03587 Pse_Me-ase pseudamin 99.7 2E-15 4.4E-20 131.4 14.3 99 159-266 44-145 (204)
50 PRK08287 cobalt-precorrin-6Y C 99.7 8.6E-15 1.9E-19 126.2 18.1 134 145-319 23-157 (187)
51 PF13649 Methyltransf_25: Meth 99.7 3E-16 6.4E-21 121.3 7.4 94 162-257 1-101 (101)
52 PF03848 TehB: Tellurite resis 99.6 3.9E-15 8.4E-20 126.6 14.7 135 159-316 31-167 (192)
53 PF08242 Methyltransf_12: Meth 99.6 4.5E-17 9.8E-22 125.4 2.6 96 163-259 1-99 (99)
54 PLN02232 ubiquinone biosynthes 99.6 1.1E-15 2.4E-20 128.1 10.8 137 185-322 1-151 (160)
55 TIGR00537 hemK_rel_arch HemK-r 99.6 1.2E-14 2.6E-19 124.4 17.4 130 159-323 20-170 (179)
56 PRK06202 hypothetical protein; 99.6 1E-15 2.2E-20 136.6 10.7 146 158-316 60-220 (232)
57 PRK13944 protein-L-isoaspartat 99.6 6.2E-15 1.3E-19 128.8 14.7 112 141-263 60-173 (205)
58 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.2E-14 4.8E-19 125.5 18.1 143 159-322 35-191 (213)
59 PLN02336 phosphoethanolamine N 99.6 4.6E-15 1E-19 146.2 15.1 140 159-317 38-181 (475)
60 TIGR02081 metW methionine bios 99.6 1.5E-14 3.2E-19 125.5 15.8 145 159-322 14-171 (194)
61 TIGR02469 CbiT precorrin-6Y C5 99.6 1.6E-14 3.5E-19 115.6 14.7 112 143-263 9-122 (124)
62 smart00138 MeTrc Methyltransfe 99.6 6.9E-15 1.5E-19 133.2 13.1 105 159-263 100-242 (264)
63 PRK00377 cbiT cobalt-precorrin 99.6 4.2E-14 9E-19 123.0 17.5 137 146-321 33-172 (198)
64 PRK04266 fibrillarin; Provisio 99.6 3.7E-14 8E-19 125.0 16.9 137 148-320 67-212 (226)
65 PF07021 MetW: Methionine bios 99.6 4.7E-14 1E-18 118.3 16.1 145 158-323 13-172 (193)
66 PRK06922 hypothetical protein; 99.6 7.6E-15 1.7E-19 144.1 12.5 106 159-266 419-540 (677)
67 PF05401 NodS: Nodulation prot 99.6 9.2E-15 2E-19 122.7 11.1 130 159-315 44-176 (201)
68 PRK13255 thiopurine S-methyltr 99.6 8.4E-14 1.8E-18 122.3 17.6 140 159-322 38-194 (218)
69 PLN03075 nicotianamine synthas 99.6 6.6E-14 1.4E-18 126.5 16.7 104 159-263 124-233 (296)
70 PRK00121 trmB tRNA (guanine-N( 99.6 1.1E-14 2.4E-19 126.8 11.1 104 159-263 41-156 (202)
71 PRK13942 protein-L-isoaspartat 99.6 4.6E-14 9.9E-19 123.9 15.0 112 140-263 63-176 (212)
72 KOG1271 Methyltransferases [Ge 99.6 8E-14 1.7E-18 114.1 15.0 129 160-319 69-206 (227)
73 TIGR03534 RF_mod_PrmC protein- 99.6 2.7E-13 5.8E-18 122.4 20.3 139 140-317 75-240 (251)
74 COG4976 Predicted methyltransf 99.6 9.3E-15 2E-19 123.8 9.1 155 141-322 113-269 (287)
75 PRK14967 putative methyltransf 99.6 2.6E-13 5.6E-18 120.3 18.9 146 142-325 25-191 (223)
76 TIGR00080 pimt protein-L-isoas 99.6 9.2E-14 2E-18 122.4 15.4 111 141-263 65-177 (215)
77 PRK14968 putative methyltransf 99.6 2E-13 4.3E-18 117.7 16.7 129 158-318 23-173 (188)
78 PRK11088 rrmA 23S rRNA methylt 99.5 6.5E-14 1.4E-18 127.9 13.0 94 159-265 86-183 (272)
79 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.8E-14 1.3E-18 121.6 10.9 104 159-263 17-132 (194)
80 TIGR01177 conserved hypothetic 99.5 2E-13 4.2E-18 128.0 15.0 114 143-263 172-294 (329)
81 TIGR00406 prmA ribosomal prote 99.5 3.8E-13 8.3E-18 123.6 16.4 101 159-264 160-260 (288)
82 TIGR00536 hemK_fam HemK family 99.5 1.5E-12 3.2E-17 119.6 20.1 104 159-263 115-244 (284)
83 PF05175 MTS: Methyltransferas 99.5 5.2E-13 1.1E-17 113.1 15.7 103 159-263 32-140 (170)
84 PRK00517 prmA ribosomal protei 99.5 4.2E-13 9.2E-18 120.9 15.9 120 158-318 119-238 (250)
85 KOG2361 Predicted methyltransf 99.5 4.2E-14 9.2E-19 121.1 7.8 153 159-317 72-236 (264)
86 TIGR03533 L3_gln_methyl protei 99.5 1.6E-12 3.5E-17 119.1 18.8 104 159-263 122-251 (284)
87 COG2264 PrmA Ribosomal protein 99.5 5.4E-13 1.2E-17 120.2 15.0 143 136-319 146-289 (300)
88 PRK15001 SAM-dependent 23S rib 99.5 3.7E-13 8E-18 126.8 14.2 104 159-263 229-340 (378)
89 PTZ00146 fibrillarin; Provisio 99.5 1.5E-12 3.2E-17 117.4 17.2 133 157-319 131-272 (293)
90 PRK14966 unknown domain/N5-glu 99.5 2.4E-12 5.2E-17 121.4 18.1 125 159-316 252-403 (423)
91 PRK11188 rrmJ 23S rRNA methylt 99.5 3E-13 6.6E-18 118.2 11.3 96 158-265 51-167 (209)
92 TIGR03438 probable methyltrans 99.5 7.3E-13 1.6E-17 122.5 14.3 105 159-263 64-177 (301)
93 PF13659 Methyltransf_26: Meth 99.5 1.9E-13 4.1E-18 108.4 8.6 105 159-263 1-115 (117)
94 COG2242 CobL Precorrin-6B meth 99.5 5.9E-12 1.3E-16 105.0 17.7 134 144-317 25-160 (187)
95 PRK00312 pcm protein-L-isoaspa 99.5 1.5E-12 3.3E-17 114.5 15.1 111 141-264 66-176 (212)
96 PRK09328 N5-glutamine S-adenos 99.5 4.8E-12 1E-16 115.9 18.3 126 158-316 108-260 (275)
97 PRK09489 rsmC 16S ribosomal RN 99.5 1E-12 2.2E-17 123.0 13.8 101 159-263 197-303 (342)
98 PRK07402 precorrin-6B methylas 99.5 2.5E-12 5.5E-17 111.7 15.4 110 145-264 32-143 (196)
99 PF05148 Methyltransf_8: Hypot 99.5 2.2E-13 4.8E-18 115.2 8.2 127 141-318 59-185 (219)
100 COG4123 Predicted O-methyltran 99.5 2E-12 4.3E-17 113.6 14.4 130 159-319 45-195 (248)
101 PRK14121 tRNA (guanine-N(7)-)- 99.4 1.3E-12 2.9E-17 122.4 14.1 104 159-263 123-235 (390)
102 PRK11805 N5-glutamine S-adenos 99.4 7E-12 1.5E-16 115.9 18.3 102 160-262 135-262 (307)
103 COG2518 Pcm Protein-L-isoaspar 99.4 2.6E-12 5.7E-17 109.5 14.0 112 140-264 59-170 (209)
104 PF06325 PrmA: Ribosomal prote 99.4 2E-12 4.3E-17 117.8 13.0 142 133-318 142-283 (295)
105 PF06080 DUF938: Protein of un 99.4 5.8E-12 1.3E-16 107.3 14.9 158 161-322 28-196 (204)
106 COG2519 GCD14 tRNA(1-methylade 99.4 4.8E-12 1E-16 110.2 14.5 111 143-264 84-196 (256)
107 PRK13256 thiopurine S-methyltr 99.4 1.3E-11 2.8E-16 108.0 17.2 107 159-266 44-166 (226)
108 KOG1269 SAM-dependent methyltr 99.4 2.4E-13 5.2E-18 126.9 6.6 227 92-331 54-282 (364)
109 PF01135 PCMT: Protein-L-isoas 99.4 1.5E-12 3.2E-17 113.2 10.7 114 138-263 57-172 (209)
110 PHA03411 putative methyltransf 99.4 5.2E-12 1.1E-16 112.6 14.2 124 159-313 65-209 (279)
111 PF00891 Methyltransf_2: O-met 99.4 6.7E-12 1.5E-16 112.6 15.2 145 144-307 91-241 (241)
112 PRK01544 bifunctional N5-gluta 99.4 8.7E-12 1.9E-16 122.8 16.5 126 159-316 139-291 (506)
113 PF08704 GCD14: tRNA methyltra 99.4 5.3E-12 1.2E-16 111.9 13.1 138 141-318 28-171 (247)
114 PRK13943 protein-L-isoaspartat 99.4 4.5E-12 9.8E-17 117.2 13.1 111 141-263 68-180 (322)
115 KOG1541 Predicted protein carb 99.4 5.1E-12 1.1E-16 106.7 12.1 118 136-263 31-160 (270)
116 PF05724 TPMT: Thiopurine S-me 99.4 2.2E-11 4.8E-16 106.7 14.7 152 141-318 25-190 (218)
117 KOG3010 Methyltransferase [Gen 99.4 3.3E-12 7.2E-17 109.6 9.1 99 161-261 36-134 (261)
118 COG2890 HemK Methylase of poly 99.3 6.6E-11 1.4E-15 107.8 16.9 122 161-316 113-261 (280)
119 TIGR03704 PrmC_rel_meth putati 99.3 7.2E-11 1.6E-15 106.2 16.9 101 159-263 87-216 (251)
120 PRK04457 spermidine synthase; 99.3 1.3E-11 2.9E-16 111.6 11.5 107 159-265 67-179 (262)
121 PF05891 Methyltransf_PK: AdoM 99.3 1.3E-11 2.8E-16 105.7 10.4 144 158-317 55-200 (218)
122 cd02440 AdoMet_MTases S-adenos 99.3 2E-11 4.4E-16 93.4 10.6 101 161-262 1-103 (107)
123 KOG3045 Predicted RNA methylas 99.3 1E-11 2.2E-16 107.3 9.1 124 141-317 167-290 (325)
124 PRK10901 16S rRNA methyltransf 99.3 1.3E-10 2.8E-15 112.7 18.0 106 158-265 244-374 (427)
125 TIGR00563 rsmB ribosomal RNA s 99.3 5.1E-11 1.1E-15 115.6 15.0 109 158-266 238-371 (426)
126 KOG2940 Predicted methyltransf 99.3 8.3E-12 1.8E-16 106.0 8.1 154 159-317 73-226 (325)
127 PLN02781 Probable caffeoyl-CoA 99.3 5.9E-11 1.3E-15 105.6 13.9 103 159-264 69-179 (234)
128 COG2813 RsmC 16S RNA G1207 met 99.3 6.5E-11 1.4E-15 106.2 14.0 103 159-264 159-267 (300)
129 PRK14901 16S rRNA methyltransf 99.3 5.3E-11 1.2E-15 115.7 14.6 107 158-265 252-386 (434)
130 PF12147 Methyltransf_20: Puta 99.3 1.5E-10 3.3E-15 102.6 15.0 170 135-316 116-296 (311)
131 PRK14904 16S rRNA methyltransf 99.2 1.2E-10 2.5E-15 113.6 14.7 106 158-265 250-379 (445)
132 PF05219 DREV: DREV methyltran 99.2 1.1E-10 2.3E-15 102.4 12.6 95 158-263 94-188 (265)
133 PRK14903 16S rRNA methyltransf 99.2 1.2E-10 2.5E-15 112.8 14.1 107 158-265 237-368 (431)
134 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.1E-10 2.3E-15 106.1 13.0 107 158-265 71-201 (264)
135 TIGR00438 rrmJ cell division p 99.2 2.1E-10 4.6E-15 98.9 13.7 94 158-263 32-146 (188)
136 PRK14902 16S rRNA methyltransf 99.2 3.5E-10 7.5E-15 110.5 16.8 105 158-264 250-380 (444)
137 smart00650 rADc Ribosomal RNA 99.2 1.8E-10 3.8E-15 97.6 12.8 109 143-263 3-113 (169)
138 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.2E-10 2.6E-15 119.3 14.1 132 159-322 539-684 (702)
139 PF01596 Methyltransf_3: O-met 99.2 1.4E-10 3E-15 100.6 11.2 118 136-264 31-156 (205)
140 PRK00811 spermidine synthase; 99.2 1.4E-10 3E-15 106.3 11.7 105 159-263 77-191 (283)
141 PF03291 Pox_MCEL: mRNA cappin 99.2 1.1E-10 2.5E-15 108.4 10.8 107 158-264 62-187 (331)
142 COG4122 Predicted O-methyltran 99.2 4.9E-10 1.1E-14 97.1 13.5 107 159-268 60-171 (219)
143 PRK01581 speE spermidine synth 99.2 3.2E-10 6.9E-15 105.0 12.5 105 159-263 151-268 (374)
144 PRK13168 rumA 23S rRNA m(5)U19 99.2 8.6E-10 1.9E-14 107.6 16.2 117 136-263 280-400 (443)
145 PRK15128 23S rRNA m(5)C1962 me 99.2 2.8E-10 6E-15 108.6 12.3 106 159-264 221-340 (396)
146 PLN02476 O-methyltransferase 99.2 6.3E-10 1.4E-14 100.3 13.6 103 159-264 119-229 (278)
147 PLN02672 methionine S-methyltr 99.2 8.6E-10 1.9E-14 115.5 16.2 131 159-320 119-305 (1082)
148 KOG2899 Predicted methyltransf 99.1 1E-09 2.2E-14 94.3 12.2 146 159-315 59-254 (288)
149 PF02390 Methyltransf_4: Putat 99.1 6.4E-10 1.4E-14 96.0 10.6 103 160-263 19-133 (195)
150 PRK11727 23S rRNA mA1618 methy 99.1 6.6E-09 1.4E-13 95.9 17.4 152 158-322 114-296 (321)
151 PF10294 Methyltransf_16: Puta 99.1 5.7E-10 1.2E-14 94.7 9.6 105 158-263 45-156 (173)
152 PRK03612 spermidine synthase; 99.1 9.5E-10 2.1E-14 109.1 12.2 105 159-263 298-415 (521)
153 PLN02366 spermidine synthase 99.1 1.5E-09 3.3E-14 99.9 12.3 105 159-263 92-206 (308)
154 PLN02589 caffeoyl-CoA O-methyl 99.1 1.5E-09 3.3E-14 96.7 11.6 115 138-263 67-190 (247)
155 TIGR00417 speE spermidine synt 99.1 1.6E-09 3.4E-14 98.8 11.7 104 159-262 73-185 (270)
156 PRK03522 rumB 23S rRNA methylu 99.0 2.2E-09 4.7E-14 100.1 12.5 115 138-262 158-273 (315)
157 PRK10909 rsmD 16S rRNA m(2)G96 99.0 5.8E-09 1.3E-13 90.1 14.2 103 159-263 54-159 (199)
158 TIGR00479 rumA 23S rRNA (uraci 99.0 7.1E-09 1.5E-13 101.0 16.1 117 136-262 275-395 (431)
159 KOG3178 Hydroxyindole-O-methyl 99.0 2E-08 4.2E-13 91.8 16.7 151 159-321 178-333 (342)
160 KOG1975 mRNA cap methyltransfe 99.0 3.4E-09 7.3E-14 94.8 11.1 107 158-264 117-238 (389)
161 PF01739 CheR: CheR methyltran 99.0 2.5E-09 5.3E-14 92.1 9.6 106 158-263 31-175 (196)
162 PHA03412 putative methyltransf 99.0 2.7E-09 5.7E-14 93.2 9.8 93 159-258 50-158 (241)
163 KOG1499 Protein arginine N-met 99.0 1.7E-09 3.8E-14 98.4 8.7 103 158-261 60-165 (346)
164 PRK10611 chemotaxis methyltran 99.0 1.4E-09 3.1E-14 98.8 7.7 105 159-263 116-262 (287)
165 COG2521 Predicted archaeal met 99.0 1.6E-09 3.5E-14 92.6 7.3 136 158-317 134-276 (287)
166 COG2263 Predicted RNA methylas 98.9 3E-08 6.5E-13 82.7 13.9 125 159-323 46-173 (198)
167 COG0220 Predicted S-adenosylme 98.9 6.9E-09 1.5E-13 91.1 10.4 103 160-263 50-164 (227)
168 KOG2904 Predicted methyltransf 98.9 2.3E-08 4.9E-13 87.6 12.8 105 159-263 149-285 (328)
169 PF07942 N2227: N2227-like pro 98.9 3.8E-07 8.1E-12 81.8 20.3 145 158-318 56-242 (270)
170 PTZ00338 dimethyladenosine tra 98.9 1.4E-08 2.9E-13 93.2 11.2 93 140-241 23-115 (294)
171 PRK00274 ksgA 16S ribosomal RN 98.9 1E-08 2.2E-13 93.5 9.7 85 141-235 30-114 (272)
172 COG3963 Phospholipid N-methylt 98.9 3.4E-08 7.5E-13 80.3 11.5 101 159-265 49-158 (194)
173 PF11968 DUF3321: Putative met 98.9 2.8E-08 6.1E-13 85.0 11.4 122 158-320 51-183 (219)
174 PRK14896 ksgA 16S ribosomal RN 98.9 1.9E-08 4E-13 91.1 11.0 87 140-237 16-102 (258)
175 PF05185 PRMT5: PRMT5 arginine 98.9 3.6E-08 7.7E-13 95.5 13.5 100 159-260 187-294 (448)
176 COG1041 Predicted DNA modifica 98.8 3.6E-08 7.9E-13 90.3 12.2 114 143-263 187-310 (347)
177 TIGR02085 meth_trns_rumB 23S r 98.8 3.9E-08 8.5E-13 93.7 12.9 118 136-263 216-334 (374)
178 PF02527 GidB: rRNA small subu 98.8 7.7E-08 1.7E-12 81.9 12.3 97 161-263 51-148 (184)
179 COG1352 CheR Methylase of chem 98.8 6.2E-08 1.4E-12 87.0 12.1 105 159-263 97-241 (268)
180 TIGR00095 RNA methyltransferas 98.8 1.1E-07 2.4E-12 81.8 13.1 104 159-263 50-159 (189)
181 PF01170 UPF0020: Putative RNA 98.8 8.1E-08 1.7E-12 81.9 12.1 115 141-261 16-148 (179)
182 KOG1500 Protein arginine N-met 98.8 1E-07 2.2E-12 85.8 13.0 102 158-261 177-280 (517)
183 KOG1661 Protein-L-isoaspartate 98.8 5.1E-08 1.1E-12 82.3 9.7 100 158-263 82-193 (237)
184 COG1092 Predicted SAM-dependen 98.7 6.2E-08 1.3E-12 91.4 10.7 105 159-264 218-337 (393)
185 TIGR00755 ksgA dimethyladenosi 98.7 1.7E-07 3.6E-12 84.7 13.2 84 141-235 17-103 (253)
186 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.7 5.4E-08 1.2E-12 86.7 8.9 145 158-317 56-238 (256)
187 KOG2915 tRNA(1-methyladenosine 98.7 5E-07 1.1E-11 79.3 14.4 111 142-262 94-209 (314)
188 KOG1663 O-methyltransferase [S 98.7 3.1E-07 6.7E-12 79.0 12.6 114 138-263 61-183 (237)
189 PRK01544 bifunctional N5-gluta 98.7 1.8E-07 3.9E-12 92.4 12.9 126 137-263 324-462 (506)
190 PF03141 Methyltransf_29: Puta 98.7 1E-08 2.2E-13 97.6 3.6 99 159-264 118-220 (506)
191 PF02475 Met_10: Met-10+ like- 98.7 1E-07 2.3E-12 82.1 8.9 98 158-260 101-199 (200)
192 KOG3191 Predicted N6-DNA-methy 98.7 2.7E-06 5.9E-11 70.3 16.4 127 159-318 44-193 (209)
193 PLN02823 spermine synthase 98.7 1.6E-07 3.4E-12 87.6 10.4 103 159-262 104-219 (336)
194 PRK04338 N(2),N(2)-dimethylgua 98.7 2.1E-07 4.6E-12 88.5 11.4 100 159-263 58-158 (382)
195 TIGR00478 tly hemolysin TlyA f 98.6 1.1E-07 2.4E-12 83.8 8.6 148 141-320 62-219 (228)
196 KOG0820 Ribosomal RNA adenine 98.6 1.9E-07 4.1E-12 81.9 9.9 85 141-233 46-130 (315)
197 PF04672 Methyltransf_19: S-ad 98.6 1.6E-07 3.5E-12 83.5 9.7 145 160-315 70-233 (267)
198 PRK11933 yebU rRNA (cytosine-C 98.6 5.4E-07 1.2E-11 87.7 14.0 107 158-265 113-244 (470)
199 PF10672 Methyltrans_SAM: S-ad 98.6 1.1E-07 2.5E-12 86.2 8.7 105 159-264 124-239 (286)
200 KOG1331 Predicted methyltransf 98.6 4.9E-08 1.1E-12 86.4 4.6 100 159-268 46-148 (293)
201 TIGR03439 methyl_EasF probable 98.6 1.8E-06 3.9E-11 79.9 15.1 117 138-262 63-196 (319)
202 PRK05031 tRNA (uracil-5-)-meth 98.6 2.4E-06 5.3E-11 81.1 15.8 115 136-263 190-320 (362)
203 PRK04148 hypothetical protein; 98.5 1.1E-06 2.4E-11 70.2 11.0 96 159-268 17-114 (134)
204 COG0357 GidB Predicted S-adeno 98.5 1.5E-06 3.2E-11 75.4 12.4 132 159-324 68-201 (215)
205 TIGR02143 trmA_only tRNA (urac 98.5 1.1E-06 2.4E-11 83.1 12.1 113 138-263 183-311 (353)
206 PF09243 Rsm22: Mitochondrial 98.5 1.8E-06 4E-11 78.7 12.8 104 159-265 34-141 (274)
207 COG0030 KsgA Dimethyladenosine 98.5 1.2E-06 2.5E-11 78.0 10.3 90 141-240 18-108 (259)
208 COG0421 SpeE Spermidine syntha 98.5 1.5E-06 3.2E-11 78.9 11.1 105 159-263 77-190 (282)
209 PRK00050 16S rRNA m(4)C1402 me 98.5 5.3E-07 1.1E-11 82.3 7.9 97 141-245 7-111 (296)
210 PF03602 Cons_hypoth95: Conser 98.4 7.2E-07 1.6E-11 76.2 7.9 105 159-264 43-154 (183)
211 COG0500 SmtA SAM-dependent met 98.4 5.5E-06 1.2E-10 68.3 12.6 104 162-268 52-160 (257)
212 PF01564 Spermine_synth: Sperm 98.4 1.4E-06 3E-11 78.1 9.1 105 159-263 77-191 (246)
213 KOG3987 Uncharacterized conser 98.4 1.8E-07 3.9E-12 78.7 3.1 145 157-316 111-258 (288)
214 PRK00536 speE spermidine synth 98.4 3.9E-06 8.4E-11 75.3 11.8 96 159-263 73-171 (262)
215 COG2520 Predicted methyltransf 98.4 2.4E-06 5.1E-11 79.1 10.7 106 158-267 188-293 (341)
216 KOG3420 Predicted RNA methylas 98.4 3.6E-07 7.8E-12 72.5 4.5 79 158-238 48-126 (185)
217 PF08123 DOT1: Histone methyla 98.4 1.7E-06 3.7E-11 75.0 8.8 116 140-261 29-156 (205)
218 COG2265 TrmA SAM-dependent met 98.3 9E-06 2E-10 78.4 13.6 119 135-263 275-396 (432)
219 PF04816 DUF633: Family of unk 98.3 8.1E-06 1.7E-10 70.8 11.8 124 162-319 1-125 (205)
220 PF09445 Methyltransf_15: RNA 98.3 8.3E-07 1.8E-11 73.6 5.3 72 161-233 2-76 (163)
221 PF03059 NAS: Nicotianamine sy 98.3 1.2E-05 2.6E-10 72.5 13.1 104 159-262 121-229 (276)
222 COG0293 FtsJ 23S rRNA methylas 98.3 5.1E-06 1.1E-10 71.1 10.0 109 141-265 32-161 (205)
223 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.1E-05 2.5E-10 83.1 13.9 121 139-263 175-347 (702)
224 COG0742 N6-adenine-specific me 98.2 1.9E-05 4.1E-10 66.6 11.8 106 158-263 43-154 (187)
225 TIGR00308 TRM1 tRNA(guanine-26 98.2 1.4E-05 3.1E-10 75.7 11.8 100 159-263 45-147 (374)
226 COG0144 Sun tRNA and rRNA cyto 98.2 2.8E-05 6E-10 73.5 13.6 109 157-266 155-291 (355)
227 KOG2798 Putative trehalase [Ca 98.2 8.8E-05 1.9E-09 66.7 15.8 175 135-325 128-344 (369)
228 PF13679 Methyltransf_32: Meth 98.2 2.3E-05 4.9E-10 64.1 11.2 98 158-261 25-129 (141)
229 PF01728 FtsJ: FtsJ-like methy 98.2 1.1E-06 2.3E-11 75.2 3.5 110 141-265 8-141 (181)
230 KOG2730 Methylase [General fun 98.2 3.8E-06 8.2E-11 71.6 6.7 97 159-256 95-195 (263)
231 PF02384 N6_Mtase: N-6 DNA Met 98.2 9E-06 2E-10 75.8 10.0 107 158-264 46-184 (311)
232 COG3897 Predicted methyltransf 98.2 6.7E-06 1.5E-10 68.9 8.0 103 158-265 79-181 (218)
233 PF05958 tRNA_U5-meth_tr: tRNA 98.2 8.8E-06 1.9E-10 76.9 9.8 78 135-220 179-256 (352)
234 KOG3201 Uncharacterized conser 98.1 1.5E-06 3.3E-11 70.3 3.1 136 159-323 30-171 (201)
235 KOG1709 Guanidinoacetate methy 98.1 3.3E-05 7.2E-10 65.7 9.6 121 135-263 84-206 (271)
236 COG0116 Predicted N6-adenine-s 98.1 8.1E-05 1.8E-09 69.6 13.0 121 138-263 176-344 (381)
237 PF00398 RrnaAD: Ribosomal RNA 98.0 3.8E-05 8.2E-10 69.7 9.9 104 140-255 17-123 (262)
238 PRK11760 putative 23S rRNA C24 98.0 3E-05 6.4E-10 71.4 9.0 87 157-256 210-296 (357)
239 COG4076 Predicted RNA methylas 98.0 2.8E-05 6.1E-10 64.7 7.8 101 159-263 33-135 (252)
240 PF01269 Fibrillarin: Fibrilla 98.0 0.00011 2.4E-09 63.4 11.4 138 154-319 69-213 (229)
241 PF13578 Methyltransf_24: Meth 97.9 2.1E-06 4.5E-11 66.5 0.1 99 163-263 1-105 (106)
242 COG4798 Predicted methyltransf 97.9 8.9E-05 1.9E-09 62.2 9.2 149 144-319 39-206 (238)
243 COG4262 Predicted spermidine s 97.9 0.00021 4.6E-09 65.6 12.1 105 159-263 290-407 (508)
244 KOG2352 Predicted spermine/spe 97.9 0.00014 2.9E-09 69.7 11.1 103 160-264 50-162 (482)
245 TIGR02987 met_A_Alw26 type II 97.8 0.00017 3.6E-09 72.3 11.5 75 159-234 32-120 (524)
246 PLN02668 indole-3-acetate carb 97.8 0.0014 3.1E-08 62.0 17.0 162 159-320 64-311 (386)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.0001 2.2E-09 67.6 8.7 107 158-265 85-221 (283)
248 TIGR01444 fkbM_fam methyltrans 97.7 0.00015 3.3E-09 59.2 7.6 58 161-219 1-59 (143)
249 COG2384 Predicted SAM-dependen 97.7 0.0021 4.6E-08 55.4 14.1 101 159-261 17-118 (226)
250 PF05971 Methyltransf_10: Prot 97.7 0.00075 1.6E-08 61.6 12.0 81 159-239 103-190 (299)
251 TIGR00006 S-adenosyl-methyltra 97.6 0.00034 7.3E-09 64.2 9.7 97 141-244 8-112 (305)
252 COG1889 NOP1 Fibrillarin-like 97.6 0.0038 8.2E-08 53.0 14.9 115 141-263 61-180 (231)
253 KOG2187 tRNA uracil-5-methyltr 97.6 0.00012 2.7E-09 70.2 6.2 67 147-220 377-443 (534)
254 PF06962 rRNA_methylase: Putat 97.5 0.00023 5E-09 57.3 6.3 82 183-264 1-93 (140)
255 KOG4589 Cell division protein 97.5 0.00087 1.9E-08 56.0 9.3 99 157-267 68-188 (232)
256 KOG3115 Methyltransferase-like 97.5 0.00052 1.1E-08 58.0 7.7 105 159-263 61-183 (249)
257 COG4627 Uncharacterized protei 97.4 5.9E-05 1.3E-09 60.8 1.7 47 218-264 39-87 (185)
258 PRK10742 putative methyltransf 97.4 0.00095 2.1E-08 59.1 9.1 90 143-238 76-176 (250)
259 PF07091 FmrO: Ribosomal RNA m 97.4 0.00051 1.1E-08 60.6 6.7 81 158-241 105-186 (251)
260 KOG1122 tRNA and rRNA cytosine 97.4 0.0012 2.7E-08 61.9 9.6 109 155-265 238-373 (460)
261 KOG2793 Putative N2,N2-dimethy 97.3 0.0024 5.2E-08 56.7 10.5 105 159-263 87-199 (248)
262 PF04989 CmcI: Cephalosporin h 97.3 0.0013 2.9E-08 56.5 8.6 104 159-264 33-148 (206)
263 COG1189 Predicted rRNA methyla 97.3 0.0029 6.3E-08 55.2 10.4 151 141-318 66-224 (245)
264 PF03141 Methyltransf_29: Puta 97.2 0.00025 5.5E-09 68.1 3.5 98 159-263 366-467 (506)
265 KOG4058 Uncharacterized conser 97.1 0.0047 1E-07 49.6 9.1 116 141-266 60-175 (199)
266 PF03492 Methyltransf_7: SAM d 97.1 0.01 2.2E-07 55.7 12.6 163 158-320 16-255 (334)
267 PF01861 DUF43: Protein of unk 97.1 0.044 9.6E-07 48.2 15.4 130 159-317 45-177 (243)
268 TIGR00027 mthyl_TIGR00027 meth 97.0 0.034 7.3E-07 50.3 15.4 171 136-316 64-248 (260)
269 PRK09424 pntA NAD(P) transhydr 96.9 0.012 2.5E-07 58.2 11.5 100 157-264 163-286 (509)
270 COG1565 Uncharacterized conser 96.7 0.039 8.5E-07 51.3 12.6 63 137-204 61-132 (370)
271 COG5459 Predicted rRNA methyla 96.7 0.012 2.5E-07 54.2 8.9 106 159-265 114-227 (484)
272 COG1064 AdhP Zn-dependent alco 96.7 0.02 4.4E-07 53.2 10.8 94 158-265 166-261 (339)
273 COG0275 Predicted S-adenosylme 96.6 0.019 4.2E-07 52.0 9.7 90 141-237 11-107 (314)
274 PF02005 TRM: N2,N2-dimethylgu 96.5 0.0079 1.7E-07 57.3 7.6 101 159-263 50-154 (377)
275 COG4301 Uncharacterized conser 96.5 0.076 1.7E-06 46.7 12.5 105 159-263 79-193 (321)
276 KOG0822 Protein kinase inhibit 96.5 0.02 4.3E-07 55.5 9.6 124 135-262 346-477 (649)
277 PF01795 Methyltransf_5: MraW 96.4 0.0047 1E-07 56.7 5.0 89 141-236 8-103 (310)
278 PRK01747 mnmC bifunctional tRN 96.4 0.018 3.8E-07 59.6 9.6 104 159-262 58-205 (662)
279 KOG1501 Arginine N-methyltrans 96.3 0.011 2.5E-07 55.8 6.9 74 159-232 67-141 (636)
280 PF04445 SAM_MT: Putative SAM- 96.3 0.025 5.3E-07 49.9 8.4 91 144-238 64-163 (234)
281 KOG1099 SAM-dependent methyltr 96.0 0.011 2.5E-07 51.1 5.1 94 159-264 42-164 (294)
282 COG0286 HsdM Type I restrictio 96.0 0.11 2.4E-06 51.5 12.7 106 159-264 187-327 (489)
283 PF11599 AviRa: RRNA methyltra 96.0 0.059 1.3E-06 46.4 8.9 121 138-263 36-214 (246)
284 COG3129 Predicted SAM-dependen 95.9 0.034 7.4E-07 48.3 7.3 82 157-238 77-165 (292)
285 cd08283 FDH_like_1 Glutathione 95.9 0.082 1.8E-06 50.8 11.0 100 158-264 184-307 (386)
286 PF02636 Methyltransf_28: Puta 95.8 0.031 6.8E-07 50.4 7.4 45 159-203 19-72 (252)
287 KOG1562 Spermidine synthase [A 95.8 0.025 5.3E-07 51.0 6.3 106 159-264 122-237 (337)
288 PRK09880 L-idonate 5-dehydroge 95.7 0.083 1.8E-06 49.8 9.9 97 158-264 169-267 (343)
289 COG1867 TRM1 N2,N2-dimethylgua 95.5 0.073 1.6E-06 49.6 8.3 100 159-263 53-154 (380)
290 TIGR00561 pntA NAD(P) transhyd 95.4 0.066 1.4E-06 52.9 8.4 97 158-262 163-283 (511)
291 KOG2920 Predicted methyltransf 95.3 0.018 3.8E-07 51.8 3.7 105 159-263 117-234 (282)
292 KOG1253 tRNA methyltransferase 95.2 0.019 4.2E-07 55.2 3.6 102 158-263 109-216 (525)
293 COG1063 Tdh Threonine dehydrog 95.1 0.25 5.4E-06 46.9 11.2 96 159-267 169-273 (350)
294 PRK13699 putative methylase; P 95.1 0.063 1.4E-06 47.6 6.6 52 211-262 3-71 (227)
295 COG3510 CmcI Cephalosporin hyd 95.1 0.14 3E-06 43.3 8.1 105 159-269 70-186 (237)
296 KOG0024 Sorbitol dehydrogenase 95.0 0.32 6.9E-06 44.7 10.8 96 158-267 169-277 (354)
297 PRK11524 putative methyltransf 95.0 0.11 2.3E-06 47.8 8.0 58 139-203 195-252 (284)
298 cd08254 hydroxyacyl_CoA_DH 6-h 94.9 0.41 8.9E-06 44.6 12.0 93 158-264 165-264 (338)
299 KOG2198 tRNA cytosine-5-methyl 94.8 0.44 9.4E-06 44.6 11.4 110 157-267 154-300 (375)
300 KOG1596 Fibrillarin and relate 94.8 0.12 2.5E-06 45.3 7.2 97 157-263 155-261 (317)
301 PHA01634 hypothetical protein 94.8 0.2 4.3E-06 39.4 7.6 46 159-204 29-74 (156)
302 PF10354 DUF2431: Domain of un 94.8 0.47 1E-05 39.8 10.6 135 165-327 3-161 (166)
303 PF01555 N6_N4_Mtase: DNA meth 94.7 0.11 2.5E-06 45.4 7.1 54 139-199 178-231 (231)
304 PRK13699 putative methylase; P 94.3 0.23 5E-06 44.0 8.1 58 140-204 151-208 (227)
305 TIGR02822 adh_fam_2 zinc-bindi 94.2 0.8 1.7E-05 42.9 12.1 90 158-264 165-255 (329)
306 PF11312 DUF3115: Protein of u 94.1 0.13 2.9E-06 47.0 6.2 107 158-264 86-243 (315)
307 PF00107 ADH_zinc_N: Zinc-bind 94.0 0.18 3.9E-06 40.0 6.3 86 168-266 1-92 (130)
308 cd00401 AdoHcyase S-adenosyl-L 94.0 0.36 7.9E-06 46.6 9.3 100 141-263 188-289 (413)
309 cd08230 glucose_DH Glucose deh 93.9 0.35 7.7E-06 45.7 9.2 92 158-265 172-271 (355)
310 COG3315 O-Methyltransferase in 93.9 1.2 2.5E-05 41.2 12.1 174 135-316 74-262 (297)
311 PF03269 DUF268: Caenorhabditi 93.8 0.2 4.3E-06 41.2 6.0 99 159-266 2-114 (177)
312 PF07757 AdoMet_MTase: Predict 93.8 0.05 1.1E-06 41.4 2.4 33 158-191 58-90 (112)
313 PF06859 Bin3: Bicoid-interact 93.6 0.022 4.8E-07 43.6 0.2 84 226-318 1-92 (110)
314 KOG2539 Mitochondrial/chloropl 93.4 0.29 6.4E-06 47.1 7.4 105 159-265 201-317 (491)
315 KOG2671 Putative RNA methylase 93.4 0.065 1.4E-06 49.3 2.9 105 158-263 208-354 (421)
316 PTZ00357 methyltransferase; Pr 93.3 0.54 1.2E-05 47.5 9.2 98 160-258 702-830 (1072)
317 cd05188 MDR Medium chain reduc 93.2 0.23 5.1E-06 44.4 6.3 92 158-264 134-233 (271)
318 PF02254 TrkA_N: TrkA-N domain 93.2 1.7 3.7E-05 33.6 10.5 84 167-263 4-96 (116)
319 PF03514 GRAS: GRAS domain fam 93.1 2.9 6.3E-05 40.0 13.9 102 158-262 110-243 (374)
320 KOG2651 rRNA adenine N-6-methy 92.9 0.45 9.8E-06 44.6 7.7 41 159-199 154-194 (476)
321 COG0686 Ald Alanine dehydrogen 92.8 0.35 7.7E-06 44.2 6.7 102 157-263 166-268 (371)
322 PF07279 DUF1442: Protein of u 92.8 1.8 3.8E-05 37.6 10.7 100 159-263 42-148 (218)
323 KOG2918 Carboxymethyl transfer 92.7 2.6 5.7E-05 38.6 12.0 55 136-197 72-129 (335)
324 cd00315 Cyt_C5_DNA_methylase C 92.7 0.34 7.3E-06 44.3 6.6 67 161-235 2-71 (275)
325 cd08232 idonate-5-DH L-idonate 92.7 0.69 1.5E-05 43.3 9.0 93 158-263 165-262 (339)
326 TIGR01202 bchC 2-desacetyl-2-h 92.6 0.66 1.4E-05 43.0 8.6 86 159-264 145-232 (308)
327 cd08281 liver_ADH_like1 Zinc-d 92.3 0.65 1.4E-05 44.3 8.4 94 158-264 191-291 (371)
328 COG1568 Predicted methyltransf 92.2 0.89 1.9E-05 40.9 8.2 101 158-262 152-259 (354)
329 cd08237 ribitol-5-phosphate_DH 92.0 1.1 2.5E-05 42.1 9.6 92 158-264 163-257 (341)
330 TIGR03451 mycoS_dep_FDH mycoth 91.6 1.1 2.4E-05 42.4 9.1 92 158-264 176-277 (358)
331 KOG1098 Putative SAM-dependent 91.4 0.24 5.3E-06 49.1 4.2 90 158-260 44-155 (780)
332 cd08239 THR_DH_like L-threonin 91.2 2.8 6E-05 39.2 11.2 94 158-264 163-263 (339)
333 TIGR03366 HpnZ_proposed putati 91.2 2.1 4.5E-05 39.0 10.1 92 158-264 120-219 (280)
334 KOG1227 Putative methyltransfe 90.9 0.5 1.1E-05 42.9 5.4 95 159-258 195-290 (351)
335 PRK05786 fabG 3-ketoacyl-(acyl 90.8 5 0.00011 35.1 12.0 102 159-264 5-136 (238)
336 PF05711 TylF: Macrocin-O-meth 90.6 1 2.2E-05 40.3 7.2 119 140-264 60-213 (248)
337 PRK11524 putative methyltransf 90.6 0.58 1.2E-05 43.0 5.8 54 209-262 8-79 (284)
338 KOG3924 Putative protein methy 90.6 1.4 3E-05 41.6 8.2 123 135-263 174-308 (419)
339 PLN03154 putative allyl alcoho 90.6 3.7 7.9E-05 38.8 11.5 94 158-264 158-259 (348)
340 PF05430 Methyltransf_30: S-ad 90.5 0.21 4.6E-06 39.6 2.4 75 210-319 33-112 (124)
341 cd08255 2-desacetyl-2-hydroxye 90.2 2.4 5.1E-05 38.3 9.6 92 158-263 97-190 (277)
342 COG4017 Uncharacterized protei 89.9 3 6.5E-05 35.4 8.8 85 159-264 45-130 (254)
343 cd08234 threonine_DH_like L-th 89.9 3 6.5E-05 38.8 10.3 94 158-264 159-258 (334)
344 TIGR03201 dearomat_had 6-hydro 89.4 2.5 5.3E-05 39.9 9.3 98 158-265 166-274 (349)
345 PRK07576 short chain dehydroge 89.4 4.5 9.7E-05 36.4 10.6 73 159-234 9-94 (264)
346 PLN02740 Alcohol dehydrogenase 89.3 1.9 4.2E-05 41.2 8.6 94 158-264 198-301 (381)
347 TIGR00518 alaDH alanine dehydr 89.2 0.86 1.9E-05 43.6 5.9 101 158-263 166-267 (370)
348 KOG2078 tRNA modification enzy 89.1 0.27 5.9E-06 46.7 2.4 61 158-219 249-310 (495)
349 TIGR02825 B4_12hDH leukotriene 89.1 7.1 0.00015 36.2 12.1 92 158-263 138-237 (325)
350 cd08245 CAD Cinnamyl alcohol d 89.0 5 0.00011 37.2 11.0 93 158-263 162-256 (330)
351 TIGR00936 ahcY adenosylhomocys 88.7 3.9 8.5E-05 39.5 10.0 88 158-264 194-283 (406)
352 cd08294 leukotriene_B4_DH_like 88.5 2.9 6.4E-05 38.7 9.0 92 158-263 143-241 (329)
353 TIGR02818 adh_III_F_hyde S-(hy 88.4 7.8 0.00017 36.8 12.0 95 158-264 185-288 (368)
354 PRK10309 galactitol-1-phosphat 88.3 2.1 4.5E-05 40.3 7.9 94 158-264 160-261 (347)
355 cd08261 Zn_ADH7 Alcohol dehydr 88.0 5.9 0.00013 36.9 10.8 94 158-264 159-259 (337)
356 PLN03209 translocon at the inn 87.9 25 0.00055 35.5 15.3 78 158-236 79-169 (576)
357 PLN02586 probable cinnamyl alc 87.9 2.8 6.1E-05 39.8 8.6 95 158-264 183-279 (360)
358 PLN02494 adenosylhomocysteinas 87.9 2.2 4.8E-05 41.7 7.8 102 141-264 240-342 (477)
359 PRK07326 short chain dehydroge 87.8 8.8 0.00019 33.5 11.3 74 159-236 6-92 (237)
360 PF03686 UPF0146: Uncharacteri 87.7 1.8 4E-05 34.1 5.8 91 159-267 14-106 (127)
361 PF11899 DUF3419: Protein of u 87.7 2.5 5.3E-05 40.5 7.9 45 158-203 35-79 (380)
362 KOG1201 Hydroxysteroid 17-beta 87.5 11 0.00025 34.4 11.6 79 157-239 36-127 (300)
363 cd05285 sorbitol_DH Sorbitol d 87.4 7.1 0.00015 36.5 11.0 94 158-264 162-266 (343)
364 PLN02827 Alcohol dehydrogenase 87.3 2 4.4E-05 41.1 7.3 92 158-264 193-296 (378)
365 PRK08324 short chain dehydroge 87.3 6.3 0.00014 41.0 11.4 101 159-263 422-557 (681)
366 cd05278 FDH_like Formaldehyde 87.2 6.2 0.00014 36.8 10.5 93 158-263 167-267 (347)
367 PRK06124 gluconate 5-dehydroge 87.2 14 0.0003 32.7 12.4 75 159-236 11-98 (256)
368 COG0604 Qor NADPH:quinone redu 87.2 4.2 9.2E-05 38.1 9.1 97 158-265 142-243 (326)
369 PRK07806 short chain dehydroge 86.8 11 0.00025 33.1 11.5 102 159-263 6-134 (248)
370 PRK05476 S-adenosyl-L-homocyst 86.7 7.7 0.00017 37.7 10.7 88 158-264 211-300 (425)
371 PRK12939 short chain dehydroge 86.6 5.7 0.00012 35.0 9.4 75 159-236 7-94 (250)
372 PRK06181 short chain dehydroge 86.3 7.7 0.00017 34.6 10.2 74 160-236 2-88 (263)
373 PRK07109 short chain dehydroge 86.0 15 0.00033 34.3 12.4 75 159-236 8-95 (334)
374 cd08295 double_bond_reductase_ 85.9 8.7 0.00019 35.9 10.7 96 158-263 151-251 (338)
375 TIGR00497 hsdM type I restrict 85.8 16 0.00035 36.5 12.9 106 158-263 217-355 (501)
376 COG2933 Predicted SAM-dependen 85.8 5.3 0.00012 35.8 8.2 87 157-256 210-296 (358)
377 cd08300 alcohol_DH_class_III c 85.8 11 0.00023 35.8 11.4 94 158-264 186-289 (368)
378 PRK08265 short chain dehydroge 85.8 9.5 0.00021 34.1 10.5 71 159-235 6-89 (261)
379 PRK12429 3-hydroxybutyrate deh 85.7 13 0.00029 32.8 11.4 76 159-237 4-92 (258)
380 cd08293 PTGR2 Prostaglandin re 85.7 12 0.00026 35.0 11.5 91 160-263 156-254 (345)
381 cd08236 sugar_DH NAD(P)-depend 85.6 1.8 3.9E-05 40.5 5.9 93 158-263 159-258 (343)
382 cd08242 MDR_like Medium chain 85.4 9.4 0.0002 35.2 10.6 90 158-263 155-245 (319)
383 KOG2352 Predicted spermine/spe 85.3 1.2 2.6E-05 43.3 4.4 107 159-267 296-420 (482)
384 TIGR02819 fdhA_non_GSH formald 85.1 18 0.00038 34.9 12.5 101 158-265 185-301 (393)
385 COG1255 Uncharacterized protei 85.0 6.6 0.00014 30.4 7.4 89 159-265 14-104 (129)
386 PLN02178 cinnamyl-alcohol dehy 84.7 4.8 0.0001 38.5 8.4 94 158-264 178-274 (375)
387 cd08285 NADP_ADH NADP(H)-depen 84.7 4.8 0.0001 37.8 8.4 94 158-264 166-267 (351)
388 PRK07231 fabG 3-ketoacyl-(acyl 84.7 18 0.00039 31.8 11.7 74 159-236 5-91 (251)
389 PF11899 DUF3419: Protein of u 84.4 1.1 2.5E-05 42.7 3.9 63 204-267 272-338 (380)
390 cd08277 liver_alcohol_DH_like 84.3 15 0.00032 34.8 11.6 97 158-264 184-287 (365)
391 cd08238 sorbose_phosphate_red 83.9 12 0.00026 36.1 10.9 99 158-262 175-287 (410)
392 cd08231 MDR_TM0436_like Hypoth 83.5 15 0.00032 34.7 11.1 93 158-263 177-280 (361)
393 PF05206 TRM13: Methyltransfer 83.5 4.9 0.00011 36.3 7.3 63 158-221 18-86 (259)
394 PRK09242 tropinone reductase; 83.4 27 0.00058 31.0 12.3 77 159-236 9-98 (257)
395 PRK06701 short chain dehydroge 83.4 20 0.00043 32.8 11.6 102 159-263 46-181 (290)
396 PRK08306 dipicolinate synthase 83.2 8.7 0.00019 35.5 9.1 90 158-263 151-241 (296)
397 KOG0023 Alcohol dehydrogenase, 83.1 9.9 0.00022 35.2 9.0 98 157-265 180-281 (360)
398 PRK06940 short chain dehydroge 82.9 21 0.00046 32.2 11.6 98 161-262 4-124 (275)
399 cd08298 CAD2 Cinnamyl alcohol 82.9 16 0.00035 33.7 11.1 89 158-263 167-256 (329)
400 PLN02514 cinnamyl-alcohol dehy 82.2 10 0.00022 35.9 9.4 96 158-264 180-276 (357)
401 COG1086 Predicted nucleoside-d 82.2 11 0.00025 37.6 9.7 81 159-240 250-339 (588)
402 PF02719 Polysacc_synt_2: Poly 82.1 4.6 0.0001 37.0 6.7 74 167-240 5-91 (293)
403 cd08301 alcohol_DH_plants Plan 82.0 21 0.00046 33.8 11.7 94 158-264 187-290 (369)
404 PRK07533 enoyl-(acyl carrier p 81.9 26 0.00057 31.2 11.7 102 159-263 10-148 (258)
405 cd05281 TDH Threonine dehydrog 81.8 17 0.00036 34.0 10.7 96 158-263 163-262 (341)
406 cd08296 CAD_like Cinnamyl alco 81.6 8.8 0.00019 35.7 8.7 94 158-264 163-260 (333)
407 PRK06128 oxidoreductase; Provi 81.5 23 0.0005 32.4 11.4 102 159-263 55-191 (300)
408 PRK08594 enoyl-(acyl carrier p 80.9 20 0.00043 32.0 10.5 104 159-263 7-147 (257)
409 cd08233 butanediol_DH_like (2R 80.8 7.3 0.00016 36.6 8.0 92 158-264 172-273 (351)
410 KOG1269 SAM-dependent methyltr 80.4 5.3 0.00011 38.0 6.7 106 159-267 181-317 (364)
411 PRK09072 short chain dehydroge 79.9 22 0.00048 31.6 10.5 75 159-237 5-91 (263)
412 PF01262 AlaDh_PNT_C: Alanine 79.9 4.6 9.9E-05 33.8 5.5 96 158-261 19-137 (168)
413 PF00145 DNA_methylase: C-5 cy 79.6 3.1 6.8E-05 38.6 5.0 65 161-234 2-69 (335)
414 PRK05565 fabG 3-ketoacyl-(acyl 79.3 22 0.00048 31.1 10.2 75 159-236 5-93 (247)
415 PTZ00075 Adenosylhomocysteinas 78.5 15 0.00033 36.1 9.3 88 158-264 253-342 (476)
416 PF12242 Eno-Rase_NADH_b: NAD( 78.4 11 0.00023 27.0 6.0 32 159-190 39-73 (78)
417 PRK07454 short chain dehydroge 78.2 17 0.00036 31.9 9.0 75 159-236 6-93 (241)
418 PRK07984 enoyl-(acyl carrier p 78.1 35 0.00075 30.7 11.2 75 159-236 6-94 (262)
419 cd08278 benzyl_alcohol_DH Benz 78.1 4.8 0.0001 38.2 5.7 93 158-263 186-285 (365)
420 KOG0821 Predicted ribosomal RN 78.0 6.9 0.00015 34.1 6.0 73 141-220 38-110 (326)
421 PRK08267 short chain dehydroge 78.0 23 0.0005 31.4 10.0 71 161-236 3-87 (260)
422 PRK06500 short chain dehydroge 77.8 41 0.0009 29.4 11.5 72 159-236 6-90 (249)
423 COG1062 AdhC Zn-dependent alco 77.6 35 0.00075 32.1 10.7 97 158-267 185-289 (366)
424 PRK08213 gluconate 5-dehydroge 77.6 16 0.00035 32.4 8.9 75 159-236 12-99 (259)
425 PRK06182 short chain dehydroge 77.5 29 0.00062 31.2 10.5 71 159-238 3-86 (273)
426 PF05050 Methyltransf_21: Meth 77.4 7.8 0.00017 31.7 6.3 54 164-217 1-61 (167)
427 PRK10669 putative cation:proto 77.4 29 0.00063 35.2 11.4 88 160-262 418-514 (558)
428 PRK07066 3-hydroxybutyryl-CoA 77.3 11 0.00024 35.2 7.8 95 159-259 7-115 (321)
429 PLN02989 cinnamyl-alcohol dehy 77.2 10 0.00023 35.1 7.7 77 159-236 5-87 (325)
430 KOG1209 1-Acyl dihydroxyaceton 77.2 15 0.00031 32.1 7.6 69 158-234 6-89 (289)
431 PRK07985 oxidoreductase; Provi 76.8 32 0.00069 31.5 10.7 102 159-263 49-185 (294)
432 cd08265 Zn_ADH3 Alcohol dehydr 76.7 21 0.00045 34.1 9.8 95 158-263 203-307 (384)
433 cd08279 Zn_ADH_class_III Class 76.3 7.2 0.00016 36.9 6.5 94 158-264 182-283 (363)
434 TIGR00692 tdh L-threonine 3-de 75.9 33 0.00071 31.9 10.8 94 158-264 161-262 (340)
435 PRK03659 glutathione-regulated 75.8 13 0.00029 38.0 8.6 89 160-263 401-498 (601)
436 cd08274 MDR9 Medium chain dehy 75.8 42 0.00092 31.2 11.6 90 158-263 177-273 (350)
437 PRK07523 gluconate 5-dehydroge 75.8 19 0.0004 32.0 8.7 75 159-236 10-97 (255)
438 KOG2912 Predicted DNA methylas 75.7 6.9 0.00015 36.1 5.6 75 162-236 106-188 (419)
439 PRK06914 short chain dehydroge 75.6 20 0.00044 32.3 9.0 77 159-236 3-91 (280)
440 PF04072 LCM: Leucine carboxyl 75.6 12 0.00027 31.6 7.1 81 160-241 80-172 (183)
441 PRK09291 short chain dehydroge 75.4 19 0.00041 31.9 8.6 74 160-236 3-83 (257)
442 PRK07814 short chain dehydroge 75.3 21 0.00044 31.9 8.9 74 159-235 10-96 (263)
443 PRK08415 enoyl-(acyl carrier p 75.1 48 0.001 30.0 11.3 102 159-263 5-143 (274)
444 cd08243 quinone_oxidoreductase 75.1 48 0.001 30.1 11.5 91 158-264 142-239 (320)
445 cd08291 ETR_like_1 2-enoyl thi 74.8 29 0.00063 32.0 10.0 92 159-264 143-243 (324)
446 cd08286 FDH_like_ADH2 formalde 74.1 19 0.00042 33.5 8.7 96 158-263 166-266 (345)
447 cd05283 CAD1 Cinnamyl alcohol 74.0 40 0.00087 31.3 10.8 94 158-264 169-264 (337)
448 PRK05854 short chain dehydroge 73.9 26 0.00057 32.4 9.4 77 159-236 14-103 (313)
449 PRK07666 fabG 3-ketoacyl-(acyl 73.8 24 0.00053 30.8 8.8 75 159-236 7-94 (239)
450 PRK06079 enoyl-(acyl carrier p 73.7 46 0.001 29.5 10.7 100 159-263 7-143 (252)
451 PF12692 Methyltransf_17: S-ad 73.5 15 0.00032 30.0 6.3 115 135-263 11-134 (160)
452 PRK12742 oxidoreductase; Provi 73.4 49 0.0011 28.7 10.7 98 159-264 6-132 (237)
453 PRK07063 short chain dehydroge 73.3 25 0.00054 31.2 8.9 77 159-236 7-96 (260)
454 PRK06172 short chain dehydroge 73.2 25 0.00054 31.0 8.8 75 159-236 7-94 (253)
455 PRK07832 short chain dehydroge 73.1 69 0.0015 28.6 11.8 74 161-236 2-88 (272)
456 cd08263 Zn_ADH10 Alcohol dehyd 73.0 33 0.00072 32.3 10.1 93 158-263 187-287 (367)
457 cd08240 6_hydroxyhexanoate_dh_ 72.9 36 0.00079 31.7 10.3 92 158-264 175-275 (350)
458 PRK12744 short chain dehydroge 72.6 61 0.0013 28.6 11.3 101 159-262 8-144 (257)
459 PRK08251 short chain dehydroge 72.5 27 0.00059 30.7 8.9 77 159-236 2-91 (248)
460 TIGR00853 pts-lac PTS system, 72.1 19 0.0004 27.0 6.4 74 159-258 3-76 (95)
461 PRK15001 SAM-dependent 23S rib 71.9 54 0.0012 31.4 11.0 96 161-264 47-143 (378)
462 PRK06949 short chain dehydroge 71.8 31 0.00067 30.5 9.1 75 159-236 9-96 (258)
463 PRK12937 short chain dehydroge 71.8 68 0.0015 27.9 11.5 102 159-263 5-139 (245)
464 PRK06114 short chain dehydroge 71.8 71 0.0015 28.2 11.7 76 159-237 8-97 (254)
465 PRK05396 tdh L-threonine 3-deh 71.7 37 0.00079 31.6 10.0 92 158-264 163-264 (341)
466 PRK07819 3-hydroxybutyryl-CoA 71.7 17 0.00038 33.3 7.5 97 160-263 6-121 (286)
467 COG5379 BtaA S-adenosylmethion 71.3 13 0.00027 34.0 6.1 44 159-203 64-107 (414)
468 PF14740 DUF4471: Domain of un 71.2 8.2 0.00018 35.4 5.1 67 224-315 220-286 (289)
469 cd08266 Zn_ADH_like1 Alcohol d 71.1 58 0.0013 29.8 11.2 90 158-263 166-265 (342)
470 PRK06194 hypothetical protein; 70.7 26 0.00057 31.6 8.6 76 159-237 6-94 (287)
471 cd05279 Zn_ADH1 Liver alcohol 70.3 26 0.00057 33.1 8.7 97 158-264 183-286 (365)
472 PF10237 N6-adenineMlase: Prob 70.3 62 0.0013 26.9 10.5 94 159-263 26-123 (162)
473 PRK05562 precorrin-2 dehydroge 70.2 35 0.00076 30.1 8.6 84 158-258 24-111 (223)
474 PRK05808 3-hydroxybutyryl-CoA 70.0 35 0.00077 31.0 9.2 93 161-260 5-115 (282)
475 cd05565 PTS_IIB_lactose PTS_II 70.0 19 0.00041 27.3 6.0 75 161-261 2-76 (99)
476 PRK07889 enoyl-(acyl carrier p 69.9 73 0.0016 28.3 11.1 100 159-263 7-145 (256)
477 cd08241 QOR1 Quinone oxidoredu 69.7 76 0.0016 28.6 11.5 93 158-264 139-239 (323)
478 TIGR00675 dcm DNA-methyltransf 69.7 9.4 0.0002 35.6 5.4 64 162-233 1-66 (315)
479 PRK07890 short chain dehydroge 69.3 29 0.00064 30.6 8.4 75 159-236 5-92 (258)
480 PRK13394 3-hydroxybutyrate deh 69.3 29 0.00062 30.7 8.4 76 159-237 7-95 (262)
481 PRK05872 short chain dehydroge 69.2 44 0.00096 30.5 9.7 75 159-237 9-96 (296)
482 PRK07102 short chain dehydroge 69.2 32 0.00069 30.2 8.5 73 160-234 2-84 (243)
483 cd08284 FDH_like_2 Glutathione 69.1 61 0.0013 30.0 10.9 92 158-263 167-266 (344)
484 COG0863 DNA modification methy 68.8 25 0.00053 32.1 8.0 57 141-204 211-267 (302)
485 cd05284 arabinose_DH_like D-ar 68.8 11 0.00024 35.0 5.8 94 158-264 167-267 (340)
486 cd08282 PFDH_like Pseudomonas 68.7 63 0.0014 30.6 11.0 97 158-264 176-286 (375)
487 PRK08063 enoyl-(acyl carrier p 68.3 82 0.0018 27.5 12.1 75 159-236 4-92 (250)
488 PRK09186 flagellin modificatio 68.0 34 0.00074 30.1 8.6 75 159-234 4-91 (256)
489 PRK06035 3-hydroxyacyl-CoA deh 68.0 32 0.00069 31.5 8.5 94 160-260 4-118 (291)
490 PRK08177 short chain dehydroge 67.9 42 0.00092 29.0 9.0 67 161-235 3-80 (225)
491 PRK05867 short chain dehydroge 67.9 31 0.00068 30.5 8.3 76 159-237 9-97 (253)
492 PRK08217 fabG 3-ketoacyl-(acyl 67.8 39 0.00085 29.6 8.9 74 159-235 5-91 (253)
493 PRK07677 short chain dehydroge 67.8 35 0.00075 30.1 8.5 73 160-235 2-87 (252)
494 PRK12384 sorbitol-6-phosphate 67.8 37 0.00081 30.0 8.8 75 160-235 3-90 (259)
495 KOG0725 Reductases with broad 67.7 96 0.0021 28.1 11.6 79 159-238 8-101 (270)
496 PF13460 NAD_binding_10: NADH( 67.7 70 0.0015 26.5 10.7 77 167-255 5-87 (183)
497 cd08260 Zn_ADH6 Alcohol dehydr 67.6 30 0.00066 32.2 8.5 93 158-263 165-264 (345)
498 PRK11154 fadJ multifunctional 67.6 41 0.00089 35.2 10.0 99 159-263 309-425 (708)
499 PRK07062 short chain dehydroge 67.6 36 0.00077 30.3 8.6 77 159-236 8-97 (265)
500 PRK08159 enoyl-(acyl carrier p 67.6 81 0.0017 28.4 11.0 102 159-263 10-148 (272)
No 1
>PLN02244 tocopherol O-methyltransferase
Probab=100.00 E-value=1.4e-37 Score=291.57 Aligned_cols=280 Identities=70% Similarity=1.166 Sum_probs=243.5
Q ss_pred hHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc
Q 017428 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (371)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt 169 (371)
.....+.+.|..|||..+..|+.+|+.++|.|||..+. ........+.+++..++..+.+......++.+|||||||+
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~ 129 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGI 129 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCC
Confidence 34577888999999999999999999999999998653 2234788888999999998877322223578999999999
Q ss_pred ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHH
Q 017428 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249 (371)
Q Consensus 170 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~ 249 (371)
|.++..+++.++++|+|+|+|+.|++.++++.+..++.+++.|+++|+.++++++++||+|++..+++|++|...+++++
T Consensus 130 G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~ 209 (340)
T PLN02244 130 GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQEL 209 (340)
T ss_pred CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHH
Confidence 99999999987889999999999999999999888887889999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccHH
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (371)
+++|||||++++.+++.....+....+.......+..+...+..+.+.+.+++.++++++||+++++++|+..+.+.|..
T Consensus 210 ~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~ 289 (340)
T PLN02244 210 ARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPA 289 (340)
T ss_pred HHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHH
Confidence 99999999999999876554444444554555556666666677778899999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHHhhcccchhHhHHHHHHHHcccccCCC
Q 017428 330 VIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALSGS 371 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 371 (371)
.......+.++.+.+..+|+.+++...+.+|..+|+.|+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~ 331 (340)
T PLN02244 290 VIKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKF 331 (340)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCcee
Confidence 888888899999999999999999988899999999999863
No 2
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.96 E-value=2e-28 Score=221.34 Aligned_cols=257 Identities=25% Similarity=0.355 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
...++|..|||..+++|..++++.+++ ++|..+.+. +.+++.++++.+++++.+++ +.+|||||||+|.
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~ 75 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGG 75 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSH
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccH
Confidence 345679999999999999999998886 588875433 78999999999999999886 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc--CCHHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSEL 249 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~--~~~~~~l~~~ 249 (371)
+++.++++++++|+|+++|++|.+.++++++..|+.+++.+...|..+++ .+||.|++..+++|+ .+...+++++
T Consensus 76 ~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~ 152 (273)
T PF02353_consen 76 LAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKI 152 (273)
T ss_dssp HHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998865 389999999999999 5679999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCcccc--ChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESL--QPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
.++|||||.+++..++..........- ..+ +-..++++... .+.+++...++++||++++++.+..++....
T Consensus 153 ~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~---i~kyiFPgg~l---ps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl 226 (273)
T PF02353_consen 153 SRLLKPGGRLVLQTITHRDPPYHAERRSSSDF---IRKYIFPGGYL---PSLSEILRAAEDAGLEVEDVENLGRHYARTL 226 (273)
T ss_dssp HHHSETTEEEEEEEEEE--HHHHHCTTCCCHH---HHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHH
T ss_pred HHhcCCCcEEEEEecccccccchhhcCCCceE---EEEeeCCCCCC---CCHHHHHHHHhcCCEEEEEEEEcCcCHHHHH
Confidence 999999999999876554322111000 111 12223333333 4788999999999999999998877765443
Q ss_pred HHHHHhh-hcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 328 PAVIHSA-LTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 328 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
....+.. ..+..+..+ -..--.-.....+..+..+|+.|.+
T Consensus 227 ~~W~~~f~~~~~~i~~~-~~~~f~r~w~~yl~~~~~~F~~g~~ 268 (273)
T PF02353_consen 227 RAWRENFDANREEIIAL-FDEEFYRMWRYYLAYCAAGFRAGSI 268 (273)
T ss_dssp HHHHHHHHHTHHHHHHH-SHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3332211 122222222 1111112355567777788888765
No 3
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.3e-27 Score=210.91 Aligned_cols=256 Identities=22% Similarity=0.259 Sum_probs=194.4
Q ss_pred HHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
.-.+++..|||..+++|..++++.+.+ .||+.+.. .+.+++...++.+++++.+++ +++|||||||+|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~----tL~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDM----TLEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCC----ChHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 445679999999999999999998764 68876654 278899999999999999987 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~ 249 (371)
+++.++++++.+|+|+++|++|.+.+++++...|+..++++...|..+.. +.||.|++..+++|+.. ...+|+.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998875 45999999999999965 89999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccHH
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~ 329 (371)
+++|+|||.+++........... ... ..+...+.++...| +..++.+..+++||++.+.+.+..+.......
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~---~~i~~yiFPgG~lP---s~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFP---DFIDKYIFPGGELP---SISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cch---HHHHHhCCCCCcCC---CHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 99999999999988765543221 111 22233344545444 78999999999999999988777765433222
Q ss_pred HHHhhhcHHHHHHHHHhhcccchhHhHHHHHHHHcccccC
Q 017428 330 VIHSALTWKGFTSLLRTEIFTGRKVLLCNHIEEDFPNALS 369 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 369 (371)
..+....-.+-...+-..-........+..+..+|+.|.+
T Consensus 235 W~~~f~~~~~~a~~~~~e~~~r~w~~yl~~~~~~Fr~~~~ 274 (283)
T COG2230 235 WRERFEANRDEAIALYDERFYRMWELYLAACAAAFRAGYI 274 (283)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCCc
Confidence 2222222111111111222222344456666667777654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.95 E-value=3.7e-27 Score=206.24 Aligned_cols=207 Identities=22% Similarity=0.362 Sum_probs=158.5
Q ss_pred ChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 017428 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (371)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~ 167 (371)
+...++.++++++..||..++... ....+.+.+. ++..+.+. ++.+||||||
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S-------------------~g~~~~Wr~~----~i~~~~~~-----~g~~vLDva~ 60 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMS-------------------FGLHRLWRRA----LISLLGIK-----PGDKVLDVAC 60 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhccccc-------------------CcchHHHHHH----HHHhhCCC-----CCCEEEEecC
Confidence 346789999999999998775522 1113333333 33444443 3899999999
Q ss_pred CcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHH
Q 017428 168 GIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (371)
Q Consensus 168 GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 246 (371)
|||.++..+++.. .++|+|+|+|+.|++.|++++...++.. ++|+++|++++||++++||+|.+.++|++++|++.+|
T Consensus 61 GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL 139 (238)
T COG2226 61 GTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKAL 139 (238)
T ss_pred CccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHH
Confidence 9999999999987 5799999999999999999999887754 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCce
Q 017428 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 247 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++++|+|||||++++.++..+........+..+... .+..+..... ...+.+.+++.++++++||..
T Consensus 140 ~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~ 219 (238)
T COG2226 140 KEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEE 219 (238)
T ss_pred HHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceE
Confidence 999999999999999998776544333333323322 2211111111 113568999999999999999
Q ss_pred EEEEecCCcc
Q 017428 314 IKAEDWSQNV 323 (371)
Q Consensus 314 v~~~~~~~~~ 323 (371)
+..+.+...+
T Consensus 220 i~~~~~~~G~ 229 (238)
T COG2226 220 VRYENLTFGI 229 (238)
T ss_pred EeeEeeeeee
Confidence 8866655544
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.94 E-value=3e-27 Score=209.18 Aligned_cols=207 Identities=24% Similarity=0.398 Sum_probs=93.6
Q ss_pred ChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 017428 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (371)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~ 167 (371)
+.+.++.+++.|+..||..++....- . .+.+.+ .+++.+... ++.+|||+||
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n~~ls~g--~-----------------~~~wr~----~~~~~~~~~-----~g~~vLDv~~ 56 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMNDLLSFG--Q-----------------DRRWRR----KLIKLLGLR-----PGDRVLDVAC 56 (233)
T ss_dssp ---------------------------------------------------S----HHHHHHT-------S--EEEEET-
T ss_pred HHHHHHHHHHHHHHHhCCCccccCCc--H-----------------HHHHHH----HHHhccCCC-----CCCEEEEeCC
Confidence 34557888999999999776653211 0 111222 223333333 3889999999
Q ss_pred CcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHH
Q 017428 168 GIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKF 245 (371)
Q Consensus 168 GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 245 (371)
|||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+.+++++|+.++
T Consensus 57 GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~ 135 (233)
T PF01209_consen 57 GTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERA 135 (233)
T ss_dssp TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHH
T ss_pred ChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHH
Confidence 9999999999876 469999999999999999999988764 8999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH-------HHHHHHhhcc-----CCCCCCCHHHHHHHHHhCCCce
Q 017428 246 VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-------ELLKKICDAY-----YLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 246 l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
+++++|+|||||++++.+++.+........+.-+.. .++......+ ....+.+.+++.++|+++||+.
T Consensus 136 l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~ 215 (233)
T PF01209_consen 136 LREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKN 215 (233)
T ss_dssp HHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------------------
T ss_pred HHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999876543211111110110 0111000111 1123568999999999999999
Q ss_pred EEEEecCCcc
Q 017428 314 IKAEDWSQNV 323 (371)
Q Consensus 314 v~~~~~~~~~ 323 (371)
++.+.+.-.+
T Consensus 216 v~~~~~~~G~ 225 (233)
T PF01209_consen 216 VEYRPLTFGI 225 (233)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9877665544
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.92 E-value=7.6e-24 Score=191.64 Aligned_cols=163 Identities=21% Similarity=0.314 Sum_probs=124.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++... .....++.++++|++++|+++++||+|++..
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 7899999999999999998875 36899999999999999887542 2223579999999999999999999999999
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHH-HHHHhhcc-----------CCCCCCCHHHH
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDAY-----------YLPAWCSTADY 302 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~ 302 (371)
+++|++++..++++++|+|||||.+++.++..+.... ...+..+.... +......+ ....+.+++++
T Consensus 154 ~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el 232 (261)
T PLN02233 154 GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEEL 232 (261)
T ss_pred ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999999987543211 11111111000 00000000 11236799999
Q ss_pred HHHHHhCCCceEEEEecCCc
Q 017428 303 VKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~ 322 (371)
.++|+++||+++....+...
T Consensus 233 ~~ll~~aGF~~~~~~~~~~g 252 (261)
T PLN02233 233 EKLALEAGFSSAKHYEISGG 252 (261)
T ss_pred HHHHHHCCCCEEEEEEcCCC
Confidence 99999999999987765443
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.92 E-value=8.3e-24 Score=181.27 Aligned_cols=211 Identities=17% Similarity=0.258 Sum_probs=156.3
Q ss_pred ccCCCCCChhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHH-HHHHcCCCCCCCCCC
Q 017428 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE-TLRFAGVSEDPTKRP 159 (371)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 159 (371)
.+..++..+..+..++++++.+||..++.-. --.+++.+. .+.++... ++
T Consensus 51 ~tV~e~eke~~V~~vF~~vA~~YD~mND~mS------------------------lGiHRlWKd~~v~~L~p~-----~~ 101 (296)
T KOG1540|consen 51 KTVRESEKERLVHHVFESVAKKYDIMNDAMS------------------------LGIHRLWKDMFVSKLGPG-----KG 101 (296)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHhh------------------------cchhHHHHHHhhhccCCC-----CC
Confidence 3444455566789999999999998766522 112222222 23444433 37
Q ss_pred CEEEEECCCcChHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCccceE
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDLV 230 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~v 230 (371)
++|||++||||..+..+.+.. . .+|+++|++++|+..++++..+.++..+ +.|+.+|++++||++++||+.
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~y 181 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAY 181 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeE
Confidence 999999999999999999876 2 6899999999999999999988777655 999999999999999999999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-------hhcc-----CCCCCCC
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-------CDAY-----YLPAWCS 298 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~ 298 (371)
++.+.+.+++++++.+++++|+|||||++.+.++......+....++.+..+.+... ...+ .+..+.+
T Consensus 182 TiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~ 261 (296)
T KOG1540|consen 182 TIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPP 261 (296)
T ss_pred EEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCC
Confidence 999999999999999999999999999999999876543222222222222211111 1111 1234678
Q ss_pred HHHHHHHHHhCCCceEE-EEecC
Q 017428 299 TADYVKLLQSLSLEDIK-AEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~-~~~~~ 320 (371)
.+++..+.+++||..+. .+.+.
T Consensus 262 qe~f~~miedaGF~~~~~ye~lt 284 (296)
T KOG1540|consen 262 QEEFASMIEDAGFSSVNGYENLT 284 (296)
T ss_pred HHHHHHHHHHcCCccccccccce
Confidence 99999999999999886 44333
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.90 E-value=2.1e-22 Score=182.45 Aligned_cols=191 Identities=24% Similarity=0.503 Sum_probs=144.2
Q ss_pred ccchhhHhhhcccc-cccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE
Q 017428 105 ESSSLWEDIWGDHM-HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183 (371)
Q Consensus 105 ~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~ 183 (371)
.....|+.+++.++ +.+ . ......++..+.+.+ +.+|||||||+|..+..+++.++++
T Consensus 19 ~~~~~~e~~~g~~~~~~g-----g-----------~~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~~ 77 (263)
T PTZ00098 19 EGIKAYEFIFGEDYISSG-----G-----------IEATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGAH 77 (263)
T ss_pred ccchhHHHHhCCCCCCCC-----c-----------hHHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCCE
Confidence 35577888887533 222 1 113456677776665 8999999999999999998876789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEE
Q 017428 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 184 v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i 261 (371)
|+|+|+|+.+++.|+++... .+++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||++++
T Consensus 78 v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999987653 2579999999998888889999999999998986 789999999999999999999
Q ss_pred EeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccCccH
Q 017428 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~ 328 (371)
.++...... .+... +........ ..+.+.+++.++|+++||++++.++.......++.
T Consensus 155 ~d~~~~~~~-------~~~~~-~~~~~~~~~-~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~ 212 (263)
T PTZ00098 155 TDYCADKIE-------NWDEE-FKAYIKKRK-YTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQ 212 (263)
T ss_pred EEecccccc-------CcHHH-HHHHHHhcC-CCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHH
Confidence 987654321 11111 111111111 23568999999999999999999887666554443
No 9
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.89 E-value=6.2e-22 Score=182.74 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=122.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +++|+|||+++.+++.|+++....+...++.++++|++++++++++||+|++..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4679999999999999999875 789999999999999999887655544589999999998887778999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-hhc-cCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDA-YYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|+.|+..+++++.++|||||.+++.+......... .......++... ... +.+..+++++++.++|+++||++++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 99999999999999999999999998643210000 000001111111 111 1223478999999999999999988
Q ss_pred EEe
Q 017428 316 AED 318 (371)
Q Consensus 316 ~~~ 318 (371)
+.-
T Consensus 287 ~~G 289 (322)
T PLN02396 287 MAG 289 (322)
T ss_pred Eee
Confidence 754
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=8.1e-22 Score=175.94 Aligned_cols=205 Identities=19% Similarity=0.289 Sum_probs=145.5
Q ss_pred hhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 017428 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (371)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~G 168 (371)
...+..+++.++..||..+..... ..... ....++..+.+++ +.+|||+|||
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~-------------------~~~~~----~~~~~l~~l~~~~-----~~~vLDiGcG 55 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISF-------------------QRHKK----WRKDTMKRMNVQA-----GTSALDVCCG 55 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcC-------------------CchHH----HHHHHHHhcCCCC-----CCEEEEeCCC
Confidence 345677778888888764332110 00111 2244555555554 7899999999
Q ss_pred cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHH
Q 017428 169 IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (371)
Q Consensus 169 tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l 246 (371)
+|.++..+++.. +.+|+|+|+|+.+++.++++++..++ ++++++.+|+.+.++++++||+|++..++++++++..++
T Consensus 56 ~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 134 (231)
T TIGR02752 56 TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVL 134 (231)
T ss_pred cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHH
Confidence 999999999875 46999999999999999999887776 589999999998888888999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCcCcccc-------ChHHHHHHH----H-HhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 247 SELARVTAPAGTIIIVTWCHRDLAPSEESL-------QPWEQELLK----K-ICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 247 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-------~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+++.++|+|||++++.+...+......... .+.....+. . .........+.+.+++.++|+++||+++
T Consensus 135 ~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 214 (231)
T TIGR02752 135 REMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDV 214 (231)
T ss_pred HHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCee
Confidence 999999999999999886543321100000 000000000 0 0000011235689999999999999999
Q ss_pred EEEecCCc
Q 017428 315 KAEDWSQN 322 (371)
Q Consensus 315 ~~~~~~~~ 322 (371)
+++.+...
T Consensus 215 ~~~~~~~g 222 (231)
T TIGR02752 215 EVKSYTGG 222 (231)
T ss_pred EEEEcccc
Confidence 98877644
No 11
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.89 E-value=1.4e-21 Score=185.55 Aligned_cols=205 Identities=22% Similarity=0.326 Sum_probs=158.2
Q ss_pred HHHHHHHHHHhcccchhhHhhhcccccc--cccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG 170 (371)
....++|..|||..+++|..++++.|++ +||... ..+..++.+.+..+++++.+++ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~-----~~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDA-----DTLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCC-----CCHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 4556788999999999999999997654 788532 2377888889999999888765 899999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHH
Q 017428 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (371)
Q Consensus 171 ~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~ 248 (371)
.++..+++.++++|+|+|+|+.|++.|+++.. ++ ++++...|+.++ +++||+|++..+++|+.+ +..++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 33 488888888765 478999999999999854 5789999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~ 324 (371)
+.++|||||.+++.++......... ..+... .+.... ...+.+++.+.++ .||++.+++.+..++.
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~---~~~i~~---yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~hy~ 318 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNV---DPWINK---YIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGADYD 318 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCC---CCCcee---eecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhhHH
Confidence 9999999999999886544322111 111111 011111 1347888888766 5999998887777654
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.87 E-value=1.5e-20 Score=185.06 Aligned_cols=166 Identities=28% Similarity=0.470 Sum_probs=132.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
+.+++.+.++ ++.+|||||||+|..+..+++.++++|+|+|+|+.+++.|+++... ...++.|.++|+...++
T Consensus 256 e~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~~ 328 (475)
T PLN02336 256 KEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKTY 328 (475)
T ss_pred HHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCCC
Confidence 4455555544 3789999999999999999987788999999999999999887653 34579999999998888
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
++++||+|++..+++|++++..++++++++|||||.+++.++......+. ......+. ..+. ...+.+++
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~~~~~~~~----~~g~-~~~~~~~~ 398 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPS-----PEFAEYIK----QRGY-DLHDVQAY 398 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc-----HHHHHHHH----hcCC-CCCCHHHH
Confidence 88899999999999999999999999999999999999998765432211 11111221 1121 25689999
Q ss_pred HHHHHhCCCceEEEEecCCcccC
Q 017428 303 VKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
.++|+++||+++.+++++..+..
T Consensus 399 ~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 399 GQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred HHHHHHCCCeeeeeecchHHHHH
Confidence 99999999999998887776543
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.86 E-value=6e-21 Score=172.69 Aligned_cols=171 Identities=19% Similarity=0.173 Sum_probs=127.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+-+..++..++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++.++++++++|+.+
T Consensus 32 ~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~ 104 (255)
T PRK11036 32 QDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD 104 (255)
T ss_pred HHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH
Confidence 34556666665 2 3689999999999999999987 789999999999999999999988887789999999987
Q ss_pred CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh----hccCCC
Q 017428 220 QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC----DAYYLP 294 (371)
Q Consensus 220 ~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 294 (371)
++ +++++||+|++..+++|+.++..+++++.++|||||++++..++....... ..+............ ......
T Consensus 105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~ 183 (255)
T PRK11036 105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMH-NMVAGNFDYVQAGMPKRKKRTLSPD 183 (255)
T ss_pred HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHH-HHHccChHHHHhcCccccccCCCCC
Confidence 63 557899999999999999999999999999999999999987654321000 000000000000000 000111
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEe
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
..++++++.++|+++||++++..-
T Consensus 184 ~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 184 YPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCHHHHHHHHHHCCCeEeeeee
Confidence 247899999999999999986543
No 14
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.85 E-value=4.9e-20 Score=163.66 Aligned_cols=150 Identities=27% Similarity=0.433 Sum_probs=124.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++.+++++...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999987 5799999999999999999999888888999999999776654 68999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.++..++++++++|||||++++.++......... .........+..+|.++++++||++++...
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE---------------HEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc---------------ccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 99999999999999999999999886432211000 000111145899999999999999999998
Q ss_pred cCCcccC
Q 017428 319 WSQNVAP 325 (371)
Q Consensus 319 ~~~~~~~ 325 (371)
+...+..
T Consensus 145 ~~~~~~~ 151 (224)
T smart00828 145 ASLEIAN 151 (224)
T ss_pred CcHhHhh
Confidence 8777654
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.85 E-value=9.4e-20 Score=161.32 Aligned_cols=197 Identities=18% Similarity=0.229 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 017428 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (371)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~G 168 (371)
...+..+++.++..||..++... ++ ....+....+..+..... ++.+|||||||
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s--~g-----------------~~~~wr~~~~~~l~~~~~-------~~~~VLDlGcG 61 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFIS--FN-----------------QDVRWRAELVKTILKYCG-------RPKKVLDVAAG 61 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhcc--CC-----------------CcHHHHHHHHHHHHHhcC-------CCCeEEEEcCC
Confidence 34567888888888886554311 00 012233334444433222 26799999999
Q ss_pred cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHH
Q 017428 169 IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSE 248 (371)
Q Consensus 169 tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~ 248 (371)
||..+..+++.++.+|+|+|+|+.|++.|+++ ..++++|++++|+++++||+|++..+++|++|++.++++
T Consensus 62 tG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e 132 (226)
T PRK05785 62 KGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAE 132 (226)
T ss_pred CCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHH
Confidence 99999999887657999999999999998863 235789999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh-------cc-C----CCCCCCHHHHHHHHHhCCCceEEE
Q 017428 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-------AY-Y----LPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 249 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~----~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++|+|||. +.+.++..+........+.-+....+..+.. .+ + ...+.+++++.++|+++| ..+..
T Consensus 133 ~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~ 209 (226)
T PRK05785 133 FTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVY 209 (226)
T ss_pred HHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEE
Confidence 99999994 3344443332111111111111111111111 11 0 113568999999999974 66777
Q ss_pred EecCCcc
Q 017428 317 EDWSQNV 323 (371)
Q Consensus 317 ~~~~~~~ 323 (371)
+.+.-.+
T Consensus 210 ~~~~~G~ 216 (226)
T PRK05785 210 EERGLGL 216 (226)
T ss_pred EEccccE
Confidence 7665544
No 16
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.85 E-value=1.7e-19 Score=161.67 Aligned_cols=172 Identities=26% Similarity=0.415 Sum_probs=129.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+...+ +.+|||+|||+|.++..++..++ .+|+++|+++.+++.+++++...+...++.+..+|+.+.
T Consensus 41 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 41 RKTIKWLGVRP-----GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHhCCCC-----CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34444444433 78999999999999999998873 899999999999999999987766666899999999888
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHH----HHHHHhhcc-----
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE----LLKKICDAY----- 291 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----- 291 (371)
+++.++||+|++..+++++.++..+++++.++|+|||.+++.++..+.... +...... .+......+
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHHcCCcH
Confidence 777789999999999999999999999999999999999998865432211 1110000 000000000
Q ss_pred -------CCCCCCCHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 292 -------YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 292 -------~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
....+++.+++.++|+++||+++++..+..++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCc
Confidence 00125688999999999999999988765554
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=8.6e-20 Score=165.16 Aligned_cols=163 Identities=25% Similarity=0.334 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
+.+.+..++..+...+ +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|++ .+++++++|
T Consensus 14 ~~~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d 80 (255)
T PRK14103 14 RGRPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGD 80 (255)
T ss_pred hhCHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcC
Confidence 3345566777776554 7899999999999999999886 6799999999999999875 258899999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH-HHHHHHhhcc--C-
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-ELLKKICDAY--Y- 292 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~- 292 (371)
+.+++ ++++||+|+++.+++|++++..++++++++|||||.+++..+.... .+.......... ..+....... .
T Consensus 81 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~ 158 (255)
T PRK14103 81 VRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRV 158 (255)
T ss_pred hhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhccccccc
Confidence 98764 5689999999999999999999999999999999999987543211 110000000000 0000000111 0
Q ss_pred CCCCCCHHHHHHHHHhCCCceEE
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
...+.+++++.++|+++||++..
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEE
Confidence 11246899999999999997543
No 18
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.84 E-value=2.5e-19 Score=161.90 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
.+......++..+... ++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++. ..+.++++|
T Consensus 26 ~q~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~------~~~~~~~~d 93 (251)
T PRK10258 26 LQRQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKD------AADHYLAGD 93 (251)
T ss_pred HHHHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCCEEEcC
Confidence 3444555666666533 3689999999999999988875 789999999999999998764 235688999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCC
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (371)
++.+++++++||+|+++.+++++.++..++.++.++|+|||.+++..+...... ++ ...+...........+
T Consensus 94 ~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~-------el-~~~~~~~~~~~~~~~~ 165 (251)
T PRK10258 94 IESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP-------EL-HQAWQAVDERPHANRF 165 (251)
T ss_pred cccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchH-------HH-HHHHHHhccCCccccC
Confidence 999888888999999999999999999999999999999999999886543321 11 1222222222233347
Q ss_pred CCHHHHHHHHHhCCCceEEEEecCC
Q 017428 297 CSTADYVKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 297 ~~~~~~~~ll~~aGF~~v~~~~~~~ 321 (371)
.+.+++.++|.+.|+.. +++.+..
T Consensus 166 ~~~~~l~~~l~~~~~~~-~~~~~~~ 189 (251)
T PRK10258 166 LPPDAIEQALNGWRYQH-HIQPITL 189 (251)
T ss_pred CCHHHHHHHHHhCCcee-eeeEEEE
Confidence 89999999999999874 4444333
No 19
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.84 E-value=3.9e-20 Score=159.09 Aligned_cols=156 Identities=27% Similarity=0.349 Sum_probs=120.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||.|.++..+|+. |+.|+|+|+++.+++.|+......++ ++.+.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4899999999999999999997 89999999999999999999988886 47788888888765558999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh-c-cCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-A-YYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|++|+..+++.+.+++||||.+++.+....... ..+.-.....+..+.+ + +....+..++++...+..+|+...+
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka---~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~ 212 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKA---YLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIID 212 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH---HHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEe
Confidence 999999999999999999999999886522110 0000000111111111 1 1112356799999999999999887
Q ss_pred EEec
Q 017428 316 AEDW 319 (371)
Q Consensus 316 ~~~~ 319 (371)
...+
T Consensus 213 ~~g~ 216 (243)
T COG2227 213 RKGL 216 (243)
T ss_pred ecce
Confidence 6533
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.83 E-value=2e-19 Score=167.19 Aligned_cols=156 Identities=21% Similarity=0.233 Sum_probs=117.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||||||+|.++..+++.....|+|+|+|+.++..++......+...++.+..+|++++++ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999875457999999999987665543333323579999999999887 788999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.++..++++++++|+|||.+++.++..+.... ..+.. ...+......+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~--~~l~p--~~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDEN--TVLVP--GDRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCc--cccCc--hhHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 999999999999999999999987653322111 00100 011111111111 24899999999999999999887
Q ss_pred cCCc
Q 017428 319 WSQN 322 (371)
Q Consensus 319 ~~~~ 322 (371)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 6553
No 21
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.83 E-value=1.4e-19 Score=167.50 Aligned_cols=146 Identities=24% Similarity=0.325 Sum_probs=117.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++.+ +.+|+++|+|+.|++.|+++... .+++++.+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 47899999999999999998876 57999999999999999987542 46889999999998888999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+++++...++++++++|||||.+++.+..... .+....+. ..+. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~---~~~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFA---DVWM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhh---hhhc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999987643211 11111111 1111 1358999999999999999998
Q ss_pred EecCC
Q 017428 317 EDWSQ 321 (371)
Q Consensus 317 ~~~~~ 321 (371)
++...
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 76433
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.82 E-value=4.3e-18 Score=152.44 Aligned_cols=175 Identities=28% Similarity=0.396 Sum_probs=130.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+.++..+.+.+ +.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.++++... ...++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccC
Confidence 44555555554 8899999999999999999886 46899999999999999987332 336899999999888
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
++++++||+|++..+++|+.++..+++++.++|||||++++.+......... .................. .......
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWH-SGDRALMRKILNFWSDHF--ADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeec-CCChHHHHHHHHHHHhcC--CCCcHHH
Confidence 8888899999999999999999999999999999999999988543221100 111111222222222111 2235677
Q ss_pred HHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
.+.++|+++||+++.+..+......+.
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~~~ 185 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETDLK 185 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccCcc
Confidence 899999999999998887766655543
No 23
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.82 E-value=7.6e-19 Score=161.54 Aligned_cols=168 Identities=17% Similarity=0.161 Sum_probs=120.6
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
...++..+... ++.+|||||||+|.++..++......|+|+|+|+.|+..++...+..+...++.+...++++++
T Consensus 110 ~~~~l~~l~~~-----~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 110 WDRVLPHLSPL-----KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHHHHhcCCC-----CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 34555555433 3789999999999999998876434799999999998876443332222357888999998887
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
.. ++||+|++..+++|+.++..++++++++|||||.|++.+...+.... ..+... ..+......+. ..+..+
T Consensus 185 ~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~--~~l~p~--~ry~k~~nv~f---lpS~~~ 256 (314)
T TIGR00452 185 EL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLN--TVLVPK--DRYAKMKNVYF---IPSVSA 256 (314)
T ss_pred CC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccc--cccCch--HHHHhcccccc---CCCHHH
Confidence 53 58999999999999999999999999999999999998754322111 111100 11111111122 348999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.++|+++||+++++......
T Consensus 257 L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 257 LKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHCCCeEEEEEeccCC
Confidence 999999999999988765543
No 24
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.82 E-value=8.5e-19 Score=155.37 Aligned_cols=199 Identities=23% Similarity=0.307 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 017428 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (371)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~ 172 (371)
+++++.++.+||..+..+... ........++..+... ++.+|||+|||+|.+
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~-----~~~~vldiG~G~G~~ 53 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFG-----------------------LHRLWRRRAVKLIGVF-----KGQKVLDVACGTGDL 53 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcc-----------------------cHHHHHHHHHHHhccC-----CCCeEEEeCCCCChh
Confidence 466778888888765443210 0112233444444433 378999999999999
Q ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHH
Q 017428 173 SRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (371)
Q Consensus 173 ~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~ 250 (371)
+..+++.++ .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++||+|++..+++++.++..+++++.
T Consensus 54 ~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~ 130 (223)
T TIGR01934 54 AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMY 130 (223)
T ss_pred HHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence 999998874 589999999999999998875 235799999999988777789999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC------------CCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY------------LPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 251 ~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
+.|+|||++++.+...............+...........+. ...+.+.+++.++|+++||+++.++.
T Consensus 131 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 999999999998865332211000000000000000000000 01246889999999999999998876
Q ss_pred cCCc
Q 017428 319 WSQN 322 (371)
Q Consensus 319 ~~~~ 322 (371)
+...
T Consensus 211 ~~~~ 214 (223)
T TIGR01934 211 LTFG 214 (223)
T ss_pred eecc
Confidence 6554
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.81 E-value=2.6e-18 Score=157.08 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=121.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|+++....++ +++.+..+|++++++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 589999999999999888877653 4799999999999999999888877 4899999999998888889999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
+++.++...++++++++|||||++++.++..... +......... ... .......+.+++.++|+++||..++
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~-~~~~~~~~~~e~~~~l~~aGf~~v~ 227 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYA-GCVAGALQEEEYLAMLAEAGFVDIT 227 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHh-ccccCCCCHHHHHHHHHHCCCCceE
Confidence 9999999999999999999999999988654321 1111111111 111 1112346889999999999999987
Q ss_pred EEec
Q 017428 316 AEDW 319 (371)
Q Consensus 316 ~~~~ 319 (371)
+...
T Consensus 228 i~~~ 231 (272)
T PRK11873 228 IQPK 231 (272)
T ss_pred EEec
Confidence 7543
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=2.9e-18 Score=154.29 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=113.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
+.+|||||||+|..+..+++.+ +.+|+|+|+|+.|++.|++++...+...+++++++|+.+.+++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 7899999999999999888742 5799999999999999999998887777899999999887753 5999999999
Q ss_pred ccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC---------------CCCCCC
Q 017428 236 GEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---------------LPAWCS 298 (371)
Q Consensus 236 l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 298 (371)
++|+++ ...++++++++|||||.+++.+.......... ......+.......+ .-...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~----~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG----ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 999864 46899999999999999999985432222111 111111111100011 111358
Q ss_pred HHHHHHHHHhCCCceE
Q 017428 299 TADYVKLLQSLSLEDI 314 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v 314 (371)
.++..++|+++||..+
T Consensus 211 ~~~~~~~L~~aGF~~v 226 (247)
T PRK15451 211 VETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHHcCchhH
Confidence 9999999999999975
No 27
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=2.9e-19 Score=150.05 Aligned_cols=136 Identities=33% Similarity=0.533 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +.+|+|+|+++.+++. .++.....+....+.++++||+|+++.+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999765 7899999999999887 134455554445455679999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH-h--hccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-C--DAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
|++|+..+++++.++|||||++++.++.... .. ...+... . .......+++.+++.++++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999865432 01 1111111 0 00011246899999999999999988
Q ss_pred E
Q 017428 315 K 315 (371)
Q Consensus 315 ~ 315 (371)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=4.1e-19 Score=147.98 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=96.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++++..+++ +++|.++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 47899999999999999999644 689999999999999999999999986 9999999999976 55 899999999
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+++|+.++..+++++.++|++||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999998865
No 29
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=2.1e-18 Score=154.65 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=115.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|.++..+++.+ +++|+|+|+|+.|++.|+++++..+...++.++++|+.+.+++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 37899999999999999999864 5789999999999999999988766556899999999988754 589999999
Q ss_pred cccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh--cc-------------CCCCCC
Q 017428 235 SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (371)
Q Consensus 235 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (371)
+++|+++ ...++++++++|+|||.+++.+......... ............. .+ ......
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKI----NHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999863 5789999999999999999998643322111 1111111111100 00 111246
Q ss_pred CHHHHHHHHHhCCCceEE
Q 017428 298 STADYVKLLQSLSLEDIK 315 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~ 315 (371)
+.+++.++|+++||..++
T Consensus 207 s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVE 224 (239)
T ss_pred CHHHHHHHHHHcCCchHH
Confidence 899999999999998653
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=5.5e-18 Score=147.10 Aligned_cols=137 Identities=23% Similarity=0.364 Sum_probs=110.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++....++ .++.+.+.|+.+.+++ ++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 689999999999999999987 78999999999999999999988887 4689999999887664 67999999999988
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...+++++.++|+|||.+++.........+. ..+.+..++.+++.++++ ||.++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-----------------TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-----------------CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 75 46899999999999999977655322211110 011123468899999997 8998776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 4
No 31
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.79 E-value=2.2e-19 Score=155.33 Aligned_cols=152 Identities=23% Similarity=0.306 Sum_probs=115.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+++|||+|||+|.+++.|++. |+.|+|||+++.|++.|++......+-. ++++...|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999996 8999999999999999999844332212 3667777777753 559999999
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc--cCCCCCCCHHHHHHHHHhCCC
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--YYLPAWCSTADYVKLLQSLSL 311 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGF 311 (371)
.+++|+.|++.+++.+.+.|||||.|++.+............ +....+..+.+. +.+..|.+++++..+|+.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i---~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI---FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc---cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999999999999999999999999999998655433222111 122223232222 223357899999999999999
Q ss_pred ceEEEE
Q 017428 312 EDIKAE 317 (371)
Q Consensus 312 ~~v~~~ 317 (371)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876653
No 32
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=8.6e-19 Score=133.49 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.2
Q ss_pred EEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH
Q 017428 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~ 242 (371)
||+|||+|..+..+++..+.+|+++|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999987468999999999999999998754 35679999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 017428 243 SKFVSELARVTAPAGTIII 261 (371)
Q Consensus 243 ~~~l~~~~~~LkpgG~l~i 261 (371)
..+++++.|+|||||+++|
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 33
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=2.1e-18 Score=135.87 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCccceEEccc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~- 234 (371)
|+.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++++...+..+++++++.|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8999999999999999999997777888999999999 33333 36699999998
Q ss_pred cccCc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55444 456889999999999999999965
No 34
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.78 E-value=2.1e-17 Score=153.62 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=122.0
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
..+++.+..+ +..+|||||||+|.+++.+++++ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~-----~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLD-----GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCC-----CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3345555444 37899999999999999999998 679999998 7899999999999998889999999998766
Q ss_pred CCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
++ .+|+|++..++|++.+. ..++++++++|+|||++++.++...... ...+. .....+....-......+...
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFD-YLSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--Cchhh-HHHHHHHHcccccccccCCCH
Confidence 54 36999999999988653 5799999999999999999997543321 11111 111111111111111124568
Q ss_pred HHHHHHHHhCCCceEEEE
Q 017428 300 ADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 300 ~~~~~ll~~aGF~~v~~~ 317 (371)
++|.++|+++||+.+++.
T Consensus 288 ~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 288 ARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHHHcCCCeeEec
Confidence 999999999999988753
No 35
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=2.9e-17 Score=148.98 Aligned_cols=163 Identities=22% Similarity=0.329 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (371)
+......++..+.+.+ +.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++. +++.+..+|
T Consensus 16 ~~~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d 84 (258)
T PRK01683 16 RTRPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEAD 84 (258)
T ss_pred hhcHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECc
Confidence 3445666777766554 7899999999999999999887 689999999999999998763 468899999
Q ss_pred CCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH--HHHHHHHhhcc-CC
Q 017428 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE--QELLKKICDAY-YL 293 (371)
Q Consensus 217 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~ 293 (371)
+..+. +.++||+|+++.+++|+++...++++++++|||||.+++....... .+....+.... ..+........ ..
T Consensus 85 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 85 IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHHhccccccC
Confidence 98764 4578999999999999999999999999999999999986422111 01000000000 00001111011 01
Q ss_pred CCCCCHHHHHHHHHhCCCce
Q 017428 294 PAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 294 ~~~~~~~~~~~ll~~aGF~~ 313 (371)
..+.+...+.++|.++|+.+
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRV 182 (258)
T ss_pred cCCCCHHHHHHHHHhCCCce
Confidence 12457889999999999864
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=3.1e-17 Score=142.14 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=107.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ ++.+...|+...+++ ++||+|++..++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999986 78999999999999999999888776 378888888766654 67999999999998
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ +...++++++++|||||++++.++......+.. ...+..++++++.+++. +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 84 457899999999999999877765332211100 01122478999999996 5888776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 168 ~ 168 (195)
T TIGR00477 168 N 168 (195)
T ss_pred e
Confidence 5
No 37
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=138.67 Aligned_cols=155 Identities=22% Similarity=0.346 Sum_probs=119.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
...|||||||||..-...-..-+.+|+++|+++.|-+++.+.++.+ .+.++. |++++.++++ +++++||.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 4668999999999877665433689999999999999999998887 456777 9999999997 889999999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc-cCCCC--CCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLPA--WCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ll~~aGF~~ 313 (371)
+...|+.+.|+++.|+|||||++++.+....... .|. .++....+. ++... ..-..+..+.|+++-|+.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~-------~~n-~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~ 227 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG-------FWN-RILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSI 227 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccch-------HHH-HHHHHHhchhhheeccceEEehhHHHHhhhccccc
Confidence 9999999999999999999999999986543322 222 233332222 11111 112335568899999999
Q ss_pred EEEEecCCc
Q 017428 314 IKAEDWSQN 322 (371)
Q Consensus 314 v~~~~~~~~ 322 (371)
+..++...+
T Consensus 228 ~~~kr~~~~ 236 (252)
T KOG4300|consen 228 DSCKRFNFG 236 (252)
T ss_pred chhhcccCC
Confidence 888766554
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.75 E-value=9.6e-17 Score=143.72 Aligned_cols=143 Identities=29% Similarity=0.402 Sum_probs=114.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..+++.+ ..+|+++|+++.++..++++.. +++.++.+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5789999999999999999886 5679999999999999887643 478999999999888889999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|+.++..++.++.++|+|||.+++.++..... ..+. ... .... ..+.+.+++.+++.++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~-~~~----~~~~-~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELR-QSF----GQHG-LRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHH-HHH----HHhc-cCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987543321 1111 111 1111 2367899999999998 9877665
Q ss_pred ecC
Q 017428 318 DWS 320 (371)
Q Consensus 318 ~~~ 320 (371)
...
T Consensus 176 ~~~ 178 (240)
T TIGR02072 176 EEL 178 (240)
T ss_pred EEE
Confidence 433
No 39
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=3.1e-16 Score=134.10 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|..+..++... +++|+++|+++.|++.|+++++..++. +++++.+|+.+.+. .++||+|+++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 7899999999999999998866 689999999999999999999999885 59999999988765 67999999874
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+.++..++++++++|||||.+++.... ....++.++.+..|+.+..+.
T Consensus 121 -~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------------------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 121 -VASLSDLVELCLPLLKPGGRFLALKGR-------------------------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred -ccCHHHHHHHHHHhcCCCeEEEEEeCC-------------------------------ChHHHHHHHHHhcCceEeeeE
Confidence 467789999999999999999997521 124456777778899877776
Q ss_pred ecCCc
Q 017428 318 DWSQN 322 (371)
Q Consensus 318 ~~~~~ 322 (371)
.+..+
T Consensus 169 ~~~~~ 173 (187)
T PRK00107 169 ELTLP 173 (187)
T ss_pred EEecC
Confidence 66554
No 40
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.73 E-value=3.5e-16 Score=139.72 Aligned_cols=155 Identities=28% Similarity=0.342 Sum_probs=115.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~l 236 (371)
++.+|||||||+|.++..+++. +++|+++|+++.+++.+++++...+. ++.+...|+.+.+ ...++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4789999999999999988886 78999999999999999998877664 5788888887654 345789999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh--hccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|+.+...+++.+.++|+|||.+++..+...... ............... .......+++.+++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKS---YLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChHH---HHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 9999999999999999999999998765321100 000000000010000 00112236789999999999999999
Q ss_pred EEEe
Q 017428 315 KAED 318 (371)
Q Consensus 315 ~~~~ 318 (371)
+...
T Consensus 202 ~~~~ 205 (233)
T PRK05134 202 DITG 205 (233)
T ss_pred eeee
Confidence 8753
No 41
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.73 E-value=3.7e-17 Score=137.25 Aligned_cols=156 Identities=24% Similarity=0.383 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
...+-...++..+++.. ..+|.|+|||+|..+..+++++ ++.|+|+|-|++|++.|+++. ++++|..+
T Consensus 14 eRtRPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a 82 (257)
T COG4106 14 ERTRPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEA 82 (257)
T ss_pred hccCcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence 33445667777777765 8999999999999999999999 899999999999999998764 68999999
Q ss_pred CCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-------
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC------- 288 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 288 (371)
|+.+.. +...+|+++++.+|++++|-..+|..+...|.|||+|.+......+.. . ...+....
T Consensus 83 Dl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~dep-----s----H~~mr~~A~~~p~~~ 152 (257)
T COG4106 83 DLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEP-----S----HRLMRETADEAPFAQ 152 (257)
T ss_pred cHhhcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCch-----h----HHHHHHHHhcCchhh
Confidence 998874 568899999999999999999999999999999999999764322211 0 11111111
Q ss_pred --hc--cCCCCCCCHHHHHHHHHhCCCce
Q 017428 289 --DA--YYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 289 --~~--~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
.. .......++..+-++|...+-++
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACRV 181 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCccccee
Confidence 11 11223578999999999887654
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.73 E-value=1.2e-16 Score=141.34 Aligned_cols=166 Identities=25% Similarity=0.289 Sum_probs=119.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+...++..+... ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+...++.+.+.|+.+
T Consensus 40 ~~~~~~~~~l~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 40 AMRRKLLDWLPKD---PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 4445555555420 124789999999999999999886 679999999999999999999877765689999999988
Q ss_pred CCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC-CC--
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY-LP-- 294 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 294 (371)
.+ ++||+|++..+++|++. ...+++++.+++++++.+.+.... .... ....+........ .+
T Consensus 116 ~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 116 LC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT---------AWLA-FLKMIGELFPGSSRATSA 182 (219)
T ss_pred CC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc---------hHHH-HHHHHHhhCcCcccccce
Confidence 65 78999999999988853 578899999999877665543210 0000 1111111111111 01
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
.+.+++++.++++++||.++..+.....
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeeccccc
Confidence 2468999999999999999988755544
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.72 E-value=1.8e-16 Score=141.21 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=107.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||||||+|.++..+++. +..|+|+|+|+.+++.|++++...+..+++.+..+|+.. .+++||+|++..+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhh
Confidence 3789999999999999999886 678999999999999999999887765689999999533 357899999999998
Q ss_pred CcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCc
Q 017428 238 HMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 238 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGF~ 312 (371)
|+++ ...+++++.+.+++++.+.+... . ..... ...+....... ....+.+.+++.++++++||+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~---~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTFAPY---T------PLLAL-LHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEECCc---c------HHHHH-HHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 8764 46788888887654443332110 0 00000 01111111101 111246889999999999999
Q ss_pred eEEEEecCCc
Q 017428 313 DIKAEDWSQN 322 (371)
Q Consensus 313 ~v~~~~~~~~ 322 (371)
++....+...
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9988766544
No 44
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.71 E-value=2.4e-16 Score=140.52 Aligned_cols=157 Identities=22% Similarity=0.250 Sum_probs=113.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+.+|||||||.|..+..++.+....|+|+|.++....+.+....-.|....+.+....++++|. .+.||+|++..+|+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh
Confidence 38999999999999999999884457999999988766544433333333334444456777776 68999999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
|..++-..|.+++..|+|||.|++-+...+.... ..+.+. ..+......|.. .|...+..+|+++||..|++.
T Consensus 194 Hrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~--~~L~P~--~rYa~m~nv~Fi---Ps~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 194 HRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN--TVLVPE--DRYAKMRNVWFI---PSVAALKNWLERAGFKDVRCV 266 (315)
T ss_pred ccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc--eEEccC--CcccCCCceEEe---CCHHHHHHHHHHcCCceEEEe
Confidence 9999999999999999999999997765433221 111110 111111222333 389999999999999999987
Q ss_pred ecCCc
Q 017428 318 DWSQN 322 (371)
Q Consensus 318 ~~~~~ 322 (371)
+....
T Consensus 267 ~~~~T 271 (315)
T PF08003_consen 267 DVSPT 271 (315)
T ss_pred cCccC
Confidence 66543
No 45
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=3.4e-16 Score=143.94 Aligned_cols=136 Identities=18% Similarity=0.281 Sum_probs=109.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999986 78999999999999999999988876 68899999877655 688999999999998
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+. +...+++++.++|+|||++++.........+. ....+..++..++.+++.. |+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~-----------------~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC-----------------PMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC-----------------CCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 85 56889999999999999987765432221110 0111234789999999965 888776
Q ss_pred E
Q 017428 317 E 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 4
No 46
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.70 E-value=1.7e-15 Score=139.55 Aligned_cols=146 Identities=22% Similarity=0.242 Sum_probs=102.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ..++.|...|+.++ +++||+|++.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~ 219 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL 219 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence 3689999999999999999986 78999999999999999999876421 13678999998654 4789999999
Q ss_pred ccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCC------CCCCCHHHHHHH
Q 017428 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL------PAWCSTADYVKL 305 (371)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 305 (371)
.+++|+++. ..+++.+.+ +.+||. ++.. .... +....+......+.- ..+++.+++.++
T Consensus 220 ~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~-~p~~----------~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~l 286 (315)
T PLN02585 220 DVLIHYPQDKADGMIAHLAS-LAEKRL-IISF-APKT----------LYYDILKRIGELFPGPSKATRAYLHAEADVERA 286 (315)
T ss_pred CEEEecCHHHHHHHHHHHHh-hcCCEE-EEEe-CCcc----------hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHH
Confidence 999998763 356666665 455555 4422 1111 011112221111111 113589999999
Q ss_pred HHhCCCceEEEEecC
Q 017428 306 LQSLSLEDIKAEDWS 320 (371)
Q Consensus 306 l~~aGF~~v~~~~~~ 320 (371)
|+++||+++..+...
T Consensus 287 L~~AGf~v~~~~~~~ 301 (315)
T PLN02585 287 LKKAGWKVARREMTA 301 (315)
T ss_pred HHHCCCEEEEEEEee
Confidence 999999988765444
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.70 E-value=1.1e-15 Score=135.58 Aligned_cols=155 Identities=25% Similarity=0.301 Sum_probs=115.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+++. +..++++|+++.+++.+++++...+. .++.+...|+.+.+.. .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999988875 67899999999999999998877664 2688999998776533 3789999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccCh-HHHHHHHHHh-h-ccCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP-WEQELLKKIC-D-AYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
+|+.++..+++++.++|+|||.+++..+...... .... .......... . ......+.+..++.++++++||++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i 198 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPKS----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRV 198 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchH----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCee
Confidence 9999999999999999999999998765322100 0000 0000000000 0 011123568899999999999999
Q ss_pred EEEEe
Q 017428 314 IKAED 318 (371)
Q Consensus 314 v~~~~ 318 (371)
+++..
T Consensus 199 ~~~~~ 203 (224)
T TIGR01983 199 KDVKG 203 (224)
T ss_pred eeeee
Confidence 98764
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=2e-15 Score=128.91 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=86.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.++..++... ..+|+|+|+|+.|++.++++++..++. +++++.+|+.+.+ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 578999999999999999999888874 7999999998864 357899999875
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+...+++.++++|+|||.+++..
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 3466778899999999999999864
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=2e-15 Score=131.36 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|+++. +++.+.++|+.+ ++++++||+|++..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 6789999999999999998875 689999999999999998753 357788999888 78889999999999999
Q ss_pred CcC--CHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 238 ~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
|++ +...+++++++++ ++.+++.++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 995 3578899999987 57888888643
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=8.6e-15 Score=126.18 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=106.0
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (371)
++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .++++..+|+.. ++
T Consensus 23 ~~~~l~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~- 94 (187)
T PRK08287 23 ALSKLELHR-----AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL- 94 (187)
T ss_pred HHHhcCCCC-----CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-
Confidence 344555443 7899999999999999999876 57999999999999999999988877 479999988743 33
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (371)
.++||+|++..... ....+++.+.++|+|||++++.... ..+.+++.
T Consensus 95 ~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~------------------------------~~~~~~~~ 141 (187)
T PRK08287 95 PGKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL------------------------------LENLHSAL 141 (187)
T ss_pred CcCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec------------------------------HhhHHHHH
Confidence 36799999876543 4567899999999999999886421 11456777
Q ss_pred HHHHhCCCceEEEEec
Q 017428 304 KLLQSLSLEDIKAEDW 319 (371)
Q Consensus 304 ~ll~~aGF~~v~~~~~ 319 (371)
++++++||..+++..+
T Consensus 142 ~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 142 AHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHCCCCcceEEEE
Confidence 8999999987776544
No 51
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=3e-16 Score=121.29 Aligned_cols=94 Identities=36% Similarity=0.641 Sum_probs=80.7
Q ss_pred EEEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc-ccc
Q 017428 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESG 236 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-~~l 236 (371)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. ++++++.|+.++++.+++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999886 3 7999999999999999999988664 7999999999988778899999995 459
Q ss_pred cCcCC--HHHHHHHHHHhcCCCc
Q 017428 237 EHMPD--KSKFVSELARVTAPAG 257 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG 257 (371)
+|+.+ ...+++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 5789999999999998
No 52
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.65 E-value=3.9e-15 Score=126.56 Aligned_cols=135 Identities=24% Similarity=0.426 Sum_probs=100.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.++||+|||.|..+..|+++ |..|+++|.|+..++.+++.++..+++ ++..+.|+.+..++ +.||+|++..++++
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 899999999999999999999888874 99999999887765 78999999888888
Q ss_pred cC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 239 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
++ ..+.+++++...++|||++++..+......+... ..+..+.+.++.+.+. ||+++..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~-----------------~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS-----------------PFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-------------------S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC-----------------CCCcccCHHHHHHHhC--CCeEEEE
Confidence 84 4578999999999999999987654322211110 0111245677777776 6777664
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.65 E-value=4.5e-17 Score=125.37 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=67.0
Q ss_pred EEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccccCc
Q 017428 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~ 239 (371)
||||||+|.++..+++.+ ..+|+|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 67999999999999999999888764 23444444443332 123699999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEE
Q 017428 240 PDKSKFVSELARVTAPAGTI 259 (371)
Q Consensus 240 ~~~~~~l~~~~~~LkpgG~l 259 (371)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 54
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=1.1e-15 Score=128.12 Aligned_cols=137 Identities=18% Similarity=0.260 Sum_probs=99.2
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 185 QGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 185 ~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+|+|+|+.|++.|+++.+.. +...+++++++|+.++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532 2235799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCcCccccChHHH-------HHHHHHhhccC-----CCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 263 TWCHRDLAPSEESLQPWEQ-------ELLKKICDAYY-----LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
++..+..... ..+..+.. ..+......+. ...+.+++++.++|+++||+.+......-.
T Consensus 81 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 81 DFNKSNQSVT-TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred ECCCCChHHH-HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 9875432100 00000000 00000001110 013568999999999999999987665444
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=1.2e-14 Score=124.39 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=107.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++ ++++..+|+.+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 45899999999999999999987775 6889999987643 468999999987766
Q ss_pred cCC---------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 239 ~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
.++ ...+++++.++|+|||.+++..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------------~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------------N 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------------C
Confidence 643 2567999999999999999976321 1
Q ss_pred CHHHHHHHHHhCCCceEEEEecCCcc
Q 017428 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~~~~~ 323 (371)
...++.+.|+++||....+.....+.
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~ 170 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFF 170 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCc
Confidence 35677899999999998888776654
No 56
>PRK06202 hypothetical protein; Provisional
Probab=99.64 E-value=1e-15 Score=136.63 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~ 232 (371)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+...+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 36899999999999998887642 35899999999999999887543 3466777777666666789999999
Q ss_pred cccccCcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 017428 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (371)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (371)
+.++||+++. ..++++++++++ |.+++.++...... +...... ..... .. .....+++.+++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~-----~~~~~~~-~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA-----YALFWAG-TRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH-----HHHHHHH-HHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 66677665433100 0000000 00000 00 111236899999
Q ss_pred HHHHHhCCCceEEE
Q 017428 303 VKLLQSLSLEDIKA 316 (371)
Q Consensus 303 ~~ll~~aGF~~v~~ 316 (371)
.+++++ ||++...
T Consensus 208 ~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 208 AALAPQ-GWRVERQ 220 (232)
T ss_pred HHHhhC-CCeEEec
Confidence 999999 9997654
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=6.2e-15 Score=128.81 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+...+++.+...+ +.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|+++++..++..+++++.+|+.
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665544 7899999999999999998876 36899999999999999999998887667999999998
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.....++||+|++..++.+++ +++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7543457899999998887664 46889999999998854
No 58
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=2.2e-14 Score=125.48 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=105.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-CCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~ 226 (371)
+.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.+.+..... .-..++++.++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 679999999999999999997 899999999999999764321100 0024689999999887532 467
Q ss_pred cceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHH
Q 017428 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 227 fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
||.|+-..+++|++. ...+++.+.++|||||.+++..+....... .+.+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999998999953 467999999999999998887665432110 11122468999999
Q ss_pred HHHhCCCceEEEEecCCc
Q 017428 305 LLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~ 322 (371)
++.. +|.+..++....+
T Consensus 175 ~f~~-~~~i~~~~~~~~~ 191 (213)
T TIGR03840 175 LYGG-HYEIELLESRDVL 191 (213)
T ss_pred HhcC-CceEEEEeecccc
Confidence 8863 5666666554433
No 59
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=4.6e-15 Score=146.23 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=108.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++.. +..+++.++++|+.. .++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 579999999999998876532 223579999999964 46778899999999999
Q ss_pred cCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceE
Q 017428 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v 314 (371)
+|+++ ...++++++++|||||++++.+.+........ .......+.....|.+++.++||...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc---------------ccCCCCeecChHHHHHHHHHheeccC
Confidence 99976 47899999999999999999886532211000 00111123467789999999999876
Q ss_pred EEE
Q 017428 315 KAE 317 (371)
Q Consensus 315 ~~~ 317 (371)
+..
T Consensus 179 ~~~ 181 (475)
T PLN02336 179 DGN 181 (475)
T ss_pred CCC
Confidence 543
No 60
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.62 E-value=1.5e-14 Score=125.47 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=103.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.++..+++..+..++|+|+|+.+++.+++ .+++++++|+.+ + ++++++||+|+++.++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 67999999999999999887656789999999999988864 247788889875 3 3667899999999999
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH-Hh-------hcc-C--CCCCCCHHHHHHH
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC-------DAY-Y--LPAWCSTADYVKL 305 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~-~--~~~~~~~~~~~~l 305 (371)
+|++++..+++++.+.+++ +++....... .. ....++.. .. ..+ . ...+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFGY-------WR-VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChhH-------HH-HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 3333211100 00 00000000 00 000 0 1136799999999
Q ss_pred HHhCCCceEEEEecCCc
Q 017428 306 LQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 306 l~~aGF~~v~~~~~~~~ 322 (371)
++++||++++...+...
T Consensus 155 l~~~Gf~v~~~~~~~~~ 171 (194)
T TIGR02081 155 CGELNLRILDRAAFDVD 171 (194)
T ss_pred HHHCCCEEEEEEEeccc
Confidence 99999999998877444
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.62 E-value=1.6e-14 Score=115.60 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=90.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ- 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 220 (371)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.++++++..+.. ++.++..|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~ 82 (124)
T TIGR02469 9 ALTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC
Confidence 33455555443 6799999999999999999986 579999999999999999998887764 789999987652
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...++||+|++..... ....++++++++|+|||++++.-
T Consensus 83 ~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 22346899999876543 34689999999999999999864
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.61 E-value=6.9e-15 Score=133.18 Aligned_cols=105 Identities=20% Similarity=0.329 Sum_probs=86.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcC-------------------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARG------------------- 205 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~----~~~------------------- 205 (371)
+.+|+|+|||||. +++.+++.+ +.+|+|+|+|+.|++.|++.+- -.+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 6899999999997 566666643 2589999999999999997531 011
Q ss_pred ---CCCCeEEEEcCCCCCCCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 206 ---LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 206 ---~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..+|.|.+.|+.+.+++.++||+|+|.++++|+++ ...++++++++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 124799999999998777889999999999999964 4689999999999999999964
No 63
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.61 E-value=4.2e-14 Score=123.00 Aligned_cols=137 Identities=13% Similarity=0.184 Sum_probs=105.9
Q ss_pred HHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CC
Q 017428 146 LRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (371)
Q Consensus 146 l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 222 (371)
+..+.+.+ +.+|||+|||+|.++..++... +.+|+++|+++.+++.++++++..++.+++.++.+|+.+. +.
T Consensus 33 l~~l~~~~-----~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~ 107 (198)
T PRK00377 33 LSKLRLRK-----GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT 107 (198)
T ss_pred HHHcCCCC-----cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh
Confidence 44555544 8899999999999999998765 4689999999999999999999888667899999998763 22
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
..+.||+|++.. ...+...+++.+.++|+|||++++.... ..+..+.
T Consensus 108 ~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~ 154 (198)
T PRK00377 108 INEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNA 154 (198)
T ss_pred cCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHH
Confidence 246899999854 3356788999999999999999874310 1134567
Q ss_pred HHHHHhCCCceEEEEecCC
Q 017428 303 VKLLQSLSLEDIKAEDWSQ 321 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~ 321 (371)
...|+++|| .+++..+..
T Consensus 155 ~~~l~~~g~-~~~~~~~~~ 172 (198)
T PRK00377 155 LSALENIGF-NLEITEVII 172 (198)
T ss_pred HHHHHHcCC-CeEEEEEeh
Confidence 788899999 455554443
No 64
>PRK04266 fibrillarin; Provisional
Probab=99.61 E-value=3.7e-14 Score=125.02 Aligned_cols=137 Identities=11% Similarity=0.165 Sum_probs=98.2
Q ss_pred HcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CC
Q 017428 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PF 222 (371)
Q Consensus 148 ~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~ 222 (371)
.+++++ +.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++.. .|+.++.+|+... ++
T Consensus 67 ~l~i~~-----g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l 138 (226)
T PRK04266 67 NFPIKK-----GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV 138 (226)
T ss_pred hCCCCC-----CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc
Confidence 455554 8999999999999999999986 468999999999999887776543 4799999998752 22
Q ss_pred CCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEEeccCC-CCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 223 PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHR-DLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
.++||+|++. +.++ ..++++++++|||||.+++...... +... . ... .
T Consensus 139 -~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-----~--~~~---------------~ 190 (226)
T PRK04266 139 -VEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-----D--PKE---------------I 190 (226)
T ss_pred -cccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-----C--HHH---------------H
Confidence 3569999853 2333 3468999999999999999421100 0000 0 000 1
Q ss_pred HHHHHHHHHhCCCceEEEEecC
Q 017428 299 TADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.++..+.|+++||+.++..+..
T Consensus 191 ~~~~~~~l~~aGF~~i~~~~l~ 212 (226)
T PRK04266 191 FKEEIRKLEEGGFEILEVVDLE 212 (226)
T ss_pred HHHHHHHHHHcCCeEEEEEcCC
Confidence 1344599999999999887653
No 65
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.60 E-value=4.7e-14 Score=118.30 Aligned_cols=145 Identities=23% Similarity=0.320 Sum_probs=108.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
|+.+|||+|||.|.+...|.+..+....|+|++++.+..+-+ ..+.++++|+++. .|++++||.|+++.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 589999999999999999988668899999999998877665 3577899999773 489999999999999
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHH----------hhc-cCCC--CCCCHHHH
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI----------CDA-YYLP--AWCSTADY 302 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~--~~~~~~~~ 302 (371)
|.++.++..+++++.|+ |...++.-.++. -|..++--.. ... |..| ++.|..++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg----------~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DF 151 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNFG----------HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDF 151 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecChH----------HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHH
Confidence 99999999999999877 445555432211 1111110000 011 1122 36899999
Q ss_pred HHHHHhCCCceEEEEecCCcc
Q 017428 303 VKLLQSLSLEDIKAEDWSQNV 323 (371)
Q Consensus 303 ~~ll~~aGF~~v~~~~~~~~~ 323 (371)
+++.++.|+.+++...+...-
T Consensus 152 e~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 152 EDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHHHHCCCEEEEEEEEcCCC
Confidence 999999999999887666544
No 66
>PRK06922 hypothetical protein; Provisional
Probab=99.59 E-value=7.6e-15 Score=144.13 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=92.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|..+..+++.+ +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998877 6899999999999999998876554 36888999998876 77899999999988
Q ss_pred ccCc-------------CCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 236 GEHM-------------PDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 236 l~~~-------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+|++ .+...++++++++|||||.+++.+...
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 8865 245789999999999999999988543
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.59 E-value=9.2e-15 Score=122.71 Aligned_cols=130 Identities=22% Similarity=0.349 Sum_probs=96.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
-.++||+|||.|.++..|+.+. .+++++|+|+..++.|++++... ++|+|.+.|+.+. .|.++||+|++..++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 6899999999999999999984 68999999999999999998643 5899999999775 46799999999999999
Q ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
+.+ ...++.++...|+|||.|++..+.. .....|+. .+..+.+.++|.+. |..|+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd-------------------~~c~~wgh--~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHARD-------------------ANCRRWGH--AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H-------------------HHHHHTT---S--HHHHHHHHHHH-SEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEecC-------------------CcccccCc--ccchHHHHHHHHHH-hhhee
Confidence 975 3578999999999999999988521 12222332 34788888888876 44333
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.59 E-value=8.4e-14 Score=122.27 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=104.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCeEEEEcCCCCCCCC-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--------------ADKVSFQVGDALQQPFP- 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~- 223 (371)
+.+|||+|||.|..+..|+++ |.+|+|||+|+..++.+.. +.++ ..+|++.++|+.+++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 679999999999999999987 8999999999999998643 1222 24689999999987532
Q ss_pred CCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHH
Q 017428 224 DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (371)
.+.||.|+-..+++|++ ....+++.+.++|+|||.+++.......... .+.|...+.++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~e 174 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEE 174 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHH
Confidence 26899999999999995 3478999999999999976665543321110 11122468999
Q ss_pred HHHHHHhCCCceEEEEecCCc
Q 017428 302 YVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 302 ~~~ll~~aGF~~v~~~~~~~~ 322 (371)
+.+++.. +|.+...+....+
T Consensus 175 l~~~~~~-~~~i~~~~~~~~~ 194 (218)
T PRK13255 175 VEALYAG-CFEIELLERQDVL 194 (218)
T ss_pred HHHHhcC-CceEEEeeecccc
Confidence 9999953 3777766655444
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.59 E-value=6.6e-14 Score=126.54 Aligned_cols=104 Identities=22% Similarity=0.330 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|+|||||.|.+ ++.++... +.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.....+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 78999999997754 44444433 67899999999999999999964 788888999999998864234789999999
Q ss_pred cccCc--CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++ +++.++++++.+.|+|||.+++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 688999999999999999999965
No 70
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.58 E-value=1.1e-14 Score=126.85 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.|++++...++ +++.++++|+ ..++ +++++||+|++..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 6899999999999999999876 57899999999999999999988877 5799999999 6655 6678999999875
Q ss_pred cccCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.. ....++++++++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 443221 13678999999999999999975
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.6e-14 Score=123.87 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
.+...++..+.+.+ +.+|||||||+|..+..+++.. ..+|+++|+++.+++.++++++..++ .++.++.+|+
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666654 8999999999999999998876 36999999999999999999998887 5899999998
Q ss_pred CCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....+.++||+|++.....++ .+.+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccc------hHHHHHhhCCCcEEEEEE
Confidence 7765556889999988766544 246777899999998864
No 72
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.58 E-value=8e-14 Score=114.06 Aligned_cols=129 Identities=24% Similarity=0.389 Sum_probs=108.0
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
.+|||+|||.|.+...|++.- ...++|+|+|+..++.|+..++..+.++.|+|.+.|+.+..+..+.||+|+--..+-.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999875 4569999999999999999999999987799999999997777789999987666555
Q ss_pred c---CC-----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 239 M---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 239 ~---~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
+ ++ +...+..+.+.|+|||+++|... .+|.+++.+.++.-|
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC-------------------------------N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC-------------------------------NFTKDELVEEFENFN 197 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec-------------------------------CccHHHHHHHHhcCC
Confidence 4 12 24578889999999999999763 247889999999999
Q ss_pred CceEEEEec
Q 017428 311 LEDIKAEDW 319 (371)
Q Consensus 311 F~~v~~~~~ 319 (371)
|+.......
T Consensus 198 f~~~~tvp~ 206 (227)
T KOG1271|consen 198 FEYLSTVPT 206 (227)
T ss_pred eEEEEeecc
Confidence 987765543
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.58 E-value=2.7e-13 Score=122.42 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
.++..++..+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.+++++...++. ++.++.+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34455555443 1 25689999999999999999876 679999999999999999999888874 7999999987
Q ss_pred CCCCCCCccceEEccccccC------cC--------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcC
Q 017428 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~------~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 272 (371)
+ ++++++||+|+++-.+.. +. ....+++++.++|+|||.+++...
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 456789999998533221 10 123678999999999999988430
Q ss_pred ccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+...+++.++|+++||..+++.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1245678899999999977663
No 74
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.57 E-value=9.3e-15 Score=123.84 Aligned_cols=155 Identities=22% Similarity=0.255 Sum_probs=113.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
++++++..+...+ -.++||+|||||..+..+... -.+++|||+|..|++.|.++ |+.+. ..+.|+...
T Consensus 113 ~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD~--L~~Aea~~F 180 (287)
T COG4976 113 LLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYDT--LYVAEAVLF 180 (287)
T ss_pred HHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchHH--HHHHHHHHH
Confidence 5667777666553 689999999999999999887 56899999999999998874 33222 234443322
Q ss_pred --CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCC
Q 017428 221 --PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (371)
Q Consensus 221 --~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (371)
...++.||+|.+..++.++.+.+.++.-+...|+|||.+.++.-...... .-.+.+. ...-++
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f~l~ps-------------~RyAH~ 245 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GFVLGPS-------------QRYAHS 245 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ceecchh-------------hhhccc
Confidence 13468899999999999999999999999999999999999763322210 0001100 001246
Q ss_pred HHHHHHHHHhCCCceEEEEecCCc
Q 017428 299 TADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 299 ~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
..-+..+++..||+++++++.+..
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccch
Confidence 778899999999999999876554
No 75
>PRK14967 putative methyltransferase; Provisional
Probab=99.57 E-value=2.6e-13 Score=120.26 Aligned_cols=146 Identities=18% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
+...+....+.+ +.+|||+|||+|.++..++.....+|+++|+++.+++.+++++...++ ++.++.+|+.+.
T Consensus 25 l~~~l~~~~~~~-----~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~- 96 (223)
T PRK14967 25 LADALAAEGLGP-----GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA- 96 (223)
T ss_pred HHHHHHhcccCC-----CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-
Confidence 344444444443 789999999999999998875224899999999999999999887775 588899998763
Q ss_pred CCCCccceEEccccccCcC---------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHH
Q 017428 222 FPDGQFDLVWSMESGEHMP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~---------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 280 (371)
+++++||+|+++-....-. ....+++++.++|||||.+++.....
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~-------------- 162 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL-------------- 162 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------
Confidence 4567899999874322111 13567889999999999999865211
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC
Q 017428 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
....++.+.+++.||..........++.+
T Consensus 163 ----------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 191 (223)
T PRK14967 163 ----------------SGVERTLTRLSEAGLDAEVVASQWIPFGP 191 (223)
T ss_pred ----------------cCHHHHHHHHHHCCCCeEEEEeeccCccH
Confidence 12345667778888876665555555444
No 76
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=9.2e-14 Score=122.45 Aligned_cols=111 Identities=23% Similarity=0.315 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
....++..+.+.+ +.+|||||||+|..+..+++..+ .+|+++|+++.+++.|+++++..++ .+++++.+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666654 89999999999999999998763 4699999999999999999999887 58999999997
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.....++||+|++.....++ .+.+.+.|+|||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345789999987665544 356788999999999864
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.56 E-value=2e-13 Score=117.69 Aligned_cols=129 Identities=21% Similarity=0.349 Sum_probs=102.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++.++ +.++..|+.+. +.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 3789999999999999999988 88999999999999999999988776433 88999998763 445689999987554
Q ss_pred cCc---------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC
Q 017428 237 EHM---------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (371)
Q Consensus 237 ~~~---------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
... .....+++++.++|||||.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------ 150 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------ 150 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------
Confidence 331 11356899999999999999886521
Q ss_pred CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
....+++.++++++||.++.+..
T Consensus 151 ~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred cCCHHHHHHHHHHCCCeeeeeee
Confidence 12346788899999998776543
No 78
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.54 E-value=6.5e-14 Score=127.87 Aligned_cols=94 Identities=30% Similarity=0.429 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
..+|||+|||+|.++..+++.+. ..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 57899999999999999988652 47999999999999997652 478999999999999999999999765
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- ..+++++|+|||||+++++...
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 41 2468899999999999998743
No 79
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.53 E-value=5.8e-14 Score=121.61 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=87.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~ 234 (371)
..+|||||||+|.++..+++.+ +..|+|+|+++.+++.|++++...++. |++++.+|+.+.+ ++++++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5689999999999999999987 679999999999999999999888874 8999999997643 4557899999876
Q ss_pred cccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+.... ..+++++.++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44332211 578999999999999999875
No 80
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.53 E-value=2e-13 Score=128.04 Aligned_cols=114 Identities=22% Similarity=0.259 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
..++.....++ +.+|||+|||+|.+++.++.. +..++|+|+++.|+..++.+++..++.+ +.+..+|+.++++
T Consensus 172 ~~~~~l~~~~~-----g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~ 244 (329)
T TIGR01177 172 RAMVNLARVTE-----GDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHhCCCC-----cCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc
Confidence 33444444443 789999999999999887664 8899999999999999999999988854 8899999999888
Q ss_pred CCCccceEEccccccC--------cCC-HHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEH--------MPD-KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~--------~~~-~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++++||+|+++-.+.. ..+ ...+++++.++|||||++++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 7889999998632211 112 4789999999999999999875
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=3.8e-13 Score=123.59 Aligned_cols=101 Identities=27% Similarity=0.344 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|||+|||+|.+++.+++....+|+|+|+++.+++.|++++..+++..++.+...+... ..+++||+|+++....
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~~- 236 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILAE- 236 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCHH-
Confidence 7899999999999998887653458999999999999999999988887777777776332 3357899999875432
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
....++.++.++|||||++++...
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 346789999999999999999763
No 82
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=1.5e-12 Score=119.60 Aligned_cols=104 Identities=20% Similarity=0.294 Sum_probs=85.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc---
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~--- 234 (371)
..+|||+|||+|.++..++..+ +.+|+|+|+|+.+++.|+++++..++..++.++.+|+.+ +++.++||+|+++-
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3689999999999999999987 579999999999999999999988886679999999876 34445899999851
Q ss_pred ----------cccCcC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 ----------SGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ----------~l~~~~------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.|-+ ....+++++.++|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 222211 24678999999999999988754
No 83
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=5.2e-13 Score=113.13 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=86.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++.+++.. ++++..|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999976 4479999999999999999999999865 99999998764 3468999999987665
Q ss_pred CcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.-.+ ...+++++.+.|+|||.++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 5433 4789999999999999998765
No 84
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=4.2e-13 Score=120.91 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=92.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||+|||+|.+++.+++....+|+|+|+|+.+++.|++++..+++..++.+..+| .+||+|+++...
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILA- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcH-
Confidence 37899999999999998877653346999999999999999999888764444433322 279999986432
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
.....++.++.++|||||++++..... ...+++.+.+++.||.++...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 234678999999999999999975321 135678889999999988765
Q ss_pred e
Q 017428 318 D 318 (371)
Q Consensus 318 ~ 318 (371)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
No 85
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.51 E-value=4.2e-14 Score=121.09 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=111.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
..+|||||||.|.....+.+.. . ..|++.|.||.+++..++...-.. .++...+.|+... +.+.+++|.|+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEE
Confidence 3489999999999999988865 3 689999999999999888654332 4666677777553 45679999999
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH--HhhccCCC-CCCCHHHHHHHH
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDAYYLP-AWCSTADYVKLL 306 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~ll 306 (371)
+..+|..++ ....++.+++++|||||.|++-+++..+.....-.- ...+.. ...+-+.. .+++.+++.+++
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~----~~~i~~nfYVRgDGT~~YfF~~eeL~~~f 225 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK----GQCISENFYVRGDGTRAYFFTEEELDELF 225 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC----CceeecceEEccCCceeeeccHHHHHHHH
Confidence 999999884 458999999999999999999987654432111000 000000 00111222 468999999999
Q ss_pred HhCCCceEEEE
Q 017428 307 QSLSLEDIKAE 317 (371)
Q Consensus 307 ~~aGF~~v~~~ 317 (371)
.++||..++..
T Consensus 226 ~~agf~~~~~~ 236 (264)
T KOG2361|consen 226 TKAGFEEVQLE 236 (264)
T ss_pred Hhcccchhccc
Confidence 99999977653
No 86
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.50 E-value=1.6e-12 Score=119.05 Aligned_cols=104 Identities=22% Similarity=0.339 Sum_probs=84.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc--
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES-- 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~-- 235 (371)
+.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|+++++..++.+++.++.+|+.+. +++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5789999999999999999886 6799999999999999999999998877899999998653 34568999998611
Q ss_pred ----ccCc-------C------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 ----GEHM-------P------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 ----l~~~-------~------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.++ + ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 0 12567899999999999998743
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=5.4e-13 Score=120.21 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+.-+.++.... ++.+|||+|||+|.+++..++.....|+|+|++|..++.|++++..++++..+.....
T Consensus 146 HpTT~lcL~~Le~~~~------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 146 HPTTSLCLEALEKLLK------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred ChhHHHHHHHHHHhhc------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 3344455555554443 3899999999999999999886334699999999999999999999998653333333
Q ss_pred CCCCCCCCCCccceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
+....+ ..++||+|+++- +.++ ..+...+.+.|||||+++++-...
T Consensus 220 ~~~~~~-~~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~---------------------------- 266 (300)
T COG2264 220 LLLEVP-ENGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILE---------------------------- 266 (300)
T ss_pred cchhhc-ccCcccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehH----------------------------
Confidence 333332 346999999874 2333 578999999999999999975211
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEec
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
...+.+.+.++++||.++++..-
T Consensus 267 --~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 267 --DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred --hHHHHHHHHHHhCCCeEeEEEec
Confidence 02556888999999999887643
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.50 E-value=3.7e-13 Score=126.75 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=86.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
..+|||+|||+|.++..+++++ ..+|+++|+|+.+++.|+++++.++.. .++++...|+... ++.++||+|+++-.
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 679999999999999999999877643 3689999997653 34568999999866
Q ss_pred ccCc---CC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~---~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|.. .+ ..++++.++++|+|||.++++.
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 6543 22 3678999999999999999985
No 89
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=1.5e-12 Score=117.38 Aligned_cols=133 Identities=12% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCccceEE
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVW 231 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~v~ 231 (371)
.++.+|||+|||+|.++..+++.. ...|+++|+++.+.+...+.++.. +|+.+++.|+... ....++||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 458999999999999999999987 358999999987664444443322 4789999998652 12346899998
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH----HHHHH
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLLQ 307 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ll~ 307 (371)
+... ...+...++.++.++|||||.++|.. -..... ...++++. .+.|+
T Consensus 208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~id------------------------~g~~pe~~f~~ev~~L~ 260 (293)
T PTZ00146 208 ADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCID------------------------STAKPEVVFASEVQKLK 260 (293)
T ss_pred EeCC--CcchHHHHHHHHHHhccCCCEEEEEE-eccccc------------------------cCCCHHHHHHHHHHHHH
Confidence 8763 22234466679999999999999942 111100 01122222 38899
Q ss_pred hCCCceEEEEec
Q 017428 308 SLSLEDIKAEDW 319 (371)
Q Consensus 308 ~aGF~~v~~~~~ 319 (371)
++||+.++....
T Consensus 261 ~~GF~~~e~v~L 272 (293)
T PTZ00146 261 KEGLKPKEQLTL 272 (293)
T ss_pred HcCCceEEEEec
Confidence 999998887664
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=2.4e-12 Score=121.38 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=96.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|..+..++... +.+|+++|+|+.+++.|+++++..+. ++.++++|+.+..++ .++||+|+++--.
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECCCC
Confidence 5699999999999999998876 67999999999999999999988774 799999998764332 4679999996422
Q ss_pred cCc---------------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc
Q 017428 237 EHM---------------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (371)
Q Consensus 237 ~~~---------------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
..- .+ ..++++.+.+.|+|||++++.. .
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G-------------------------- 382 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G-------------------------- 382 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C--------------------------
Confidence 100 11 2467778888999999987643 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+++
T Consensus 383 ----~~Q~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 383 ----FDQGAAVRGVLAENGFSGVET 403 (423)
T ss_pred ----ccHHHHHHHHHHHCCCcEEEE
Confidence 124667889999999987665
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=3e-13 Score=118.22 Aligned_cols=96 Identities=21% Similarity=0.281 Sum_probs=77.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+|||||||+|.++..+++.. ...|+|||+++ | ... +++.++++|+.+.+ +.+++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 47899999999999999999986 36899999998 2 122 46999999998853 567889
Q ss_pred ceEEccccccCcCCH-----------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 228 D~v~~~~~l~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+|++..+.+...++ ..+++++.++|||||.+++..+.
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999997766554332 46899999999999999997753
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.48 E-value=7.3e-13 Score=122.52 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=81.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCC----ccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG----QFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~----~fD~v~ 231 (371)
+.+|||+|||+|..+..+++.+ +.+|+++|+|+.|++.+++++......-++.++++|+.+. +++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 6789999999999999999886 5799999999999999999887643223577789999763 33322 223444
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..++++++ +...++++++++|+|||.+++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 456777775 34679999999999999998743
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.47 E-value=1.9e-13 Score=108.38 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 358999999999999999988448999999999999999999999988788999999998764 678999999997655
Q ss_pred cCcC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 5321 23688999999999999999875
No 94
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.47 E-value=5.9e-12 Score=105.02 Aligned_cols=134 Identities=16% Similarity=0.108 Sum_probs=106.0
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
-.+.++.+.+ +.+++|||||||..++.++... ..+|+++|-+++.++..++++++.++ +|+.++.+|+.+.--
T Consensus 25 l~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 25 LTLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence 3455666554 8999999999999999999544 68999999999999999999999996 699999999876411
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHH
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY 302 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (371)
...+||.|+.... .+.+.+++.+...|||||+|++.-... -+....
T Consensus 99 ~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl------------------------------E~~~~a 144 (187)
T COG2242 99 DLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL------------------------------ETLAKA 144 (187)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH------------------------------HHHHHH
Confidence 1127999999876 466789999999999999999964211 134456
Q ss_pred HHHHHhCCC-ceEEEE
Q 017428 303 VKLLQSLSL-EDIKAE 317 (371)
Q Consensus 303 ~~ll~~aGF-~~v~~~ 317 (371)
.+.+++.|| +++++.
T Consensus 145 ~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 145 LEALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHHcCCceEEEEE
Confidence 678899999 655553
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.5e-12 Score=114.48 Aligned_cols=111 Identities=16% Similarity=0.177 Sum_probs=88.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
....++..+.+.+ +.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++++..++ .++.+..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence 3445555555554 899999999999999888776 45899999999999999999998887 4699999998664
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..+.++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 2234789999998766554 3567889999999998653
No 96
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=4.8e-12 Score=115.88 Aligned_cols=126 Identities=25% Similarity=0.395 Sum_probs=97.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++. .....++.++.+|+.+. ++.++||+|+++-..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 37899999999999999999987 5899999999999999999987 33346899999998653 335789999985321
Q ss_pred cC--------------------------cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhc
Q 017428 237 EH--------------------------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (371)
Q Consensus 237 ~~--------------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
.. +.....+++++.++|+|||++++.. .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-------------------------
Confidence 10 0113568888999999999999842 0
Q ss_pred cCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 291 YYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+++
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEE
Confidence 113456888999999986665
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=123.03 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|.++..+++.. ..+|+++|+|+.+++.++++++.+++. .++...|+... ..++||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCccEEEECCCcc
Confidence 5689999999999999999986 569999999999999999999988763 56778887653 257899999998887
Q ss_pred Cc-----CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HM-----PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. .....+++++.+.|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 53 234789999999999999999976
No 98
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.46 E-value=2.5e-12 Score=111.65 Aligned_cols=110 Identities=12% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CC
Q 017428 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PF 222 (371)
Q Consensus 145 ~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 222 (371)
++..+...+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.++++++..++ .+++++.+|+.+. +.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 455555443 7899999999999999998765 57999999999999999999988887 4799999998652 21
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
....+|.|+... ..+...+++++.++|+|||++++...
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 123467765432 24568899999999999999999763
No 99
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.45 E-value=2.2e-13 Score=115.18 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
-++.++.++...+ +...|.|+|||.+.++..+.. +..|...|+-. .|-.+..+|+.+.
T Consensus 59 Pvd~iI~~l~~~~----~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKRP----KSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhcC----CCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 4556666655333 467999999999998866543 35799999965 2344688999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
|+++++.|+++++.+|.. .|+..++.|+.|+|||||.|.|++... ++.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S----------------------------Rf~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS----------------------------RFENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG----------------------------G-S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc----------------------------cCcCHH
Confidence 999999999999988876 699999999999999999999998532 133678
Q ss_pred HHHHHHHhCCCceEEEEe
Q 017428 301 DYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~ 318 (371)
.+.+.++..||..+....
T Consensus 168 ~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHCCCeEEeccc
Confidence 899999999999887543
No 100
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.45 E-value=2e-12 Score=113.61 Aligned_cols=130 Identities=22% Similarity=0.261 Sum_probs=105.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~ 235 (371)
..+|||+|||+|..++.++++. .++++|||+++++.+.|++.++.+++.++++++++|+.+.. ....+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999987 59999999999999999999999999999999999998863 34467999999643
Q ss_pred ccCc------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 236 GEHM------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 236 l~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
++-. .+.+.+++.+.++|||||.+.++... .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 3322 13468999999999999999998621 1
Q ss_pred CHHHHHHHHHhCCCceEEEEec
Q 017428 298 STADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
...++.++|.+.+|....+...
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEe
Confidence 2345677788878876665443
No 101
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=1.3e-12 Score=122.42 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~ 235 (371)
+..+||||||+|.++..+|... +..++|+|+++.+++.|.+++...++ .|+.++.+|+..+ .++++++|.|++...
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 5689999999999999999987 67999999999999999999998888 5799999998654 467899999997654
Q ss_pred ccCcCCH------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+.... ..+++++.|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 3332221 579999999999999999976
No 102
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=7e-12 Score=115.90 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=84.1
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc---
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--- 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--- 235 (371)
.+|||+|||+|.++..++..+ +.+|+++|+|+.+++.|+++++..++.+++.++.+|+.+. ++.++||+|+++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999999887 6799999999999999999999988877899999998653 34568999998621
Q ss_pred ----------ccCcC------------CHHHHHHHHHHhcCCCcEEEEE
Q 017428 236 ----------GEHMP------------DKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 236 ----------l~~~~------------~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+.|-+ ....+++++.++|+|||.+++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111 1257889999999999999884
No 103
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.6e-12 Score=109.51 Aligned_cols=112 Identities=20% Similarity=0.315 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+...++..+.+++ +.+|||||||+|+.+..+++..+ +|+.+|..+...+.|+++++..|+. ||.+.++|...
T Consensus 59 ~~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~ 131 (209)
T COG2518 59 HMVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSK 131 (209)
T ss_pred HHHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence 36777788887775 99999999999999999999744 9999999999999999999999985 69999999876
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-.-+..+||.|+.......++. .+.+-|||||++++-.-
T Consensus 132 G~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 132 GWPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEEc
Confidence 4334589999999988877765 46678999999999663
No 104
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=2e-12 Score=117.76 Aligned_cols=142 Identities=21% Similarity=0.293 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
.......++.-+++..... ++.+|||+|||+|.+++..++....+|+|+|+++..++.|++++..+++..++.+
T Consensus 142 TG~H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 142 TGHHPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp SSHCHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred CCCCHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 3455566666666666643 3789999999999999998886334799999999999999999999999876654
Q ss_pred EEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccC
Q 017428 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (371)
Q Consensus 213 ~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
. ...+ ...++||+|+++-... -...++..+.++|+|||+++++-...
T Consensus 216 ~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~-------------------------- 262 (295)
T PF06325_consen 216 S--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE-------------------------- 262 (295)
T ss_dssp S--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG--------------------------
T ss_pred E--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH--------------------------
Confidence 3 2222 2358999999874332 23567888999999999999976321
Q ss_pred CCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 293 LPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
...+++.+.+++ ||..++...
T Consensus 263 ----~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 263 ----EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp ----GGHHHHHHHHHT-TEEEEEEEE
T ss_pred ----HHHHHHHHHHHC-CCEEEEEEE
Confidence 135567788877 999887654
No 105
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.42 E-value=5.8e-12 Score=107.29 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=115.0
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--------CCccceEE
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--------DGQFDLVW 231 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------~~~fD~v~ 231 (371)
+|||||||||..+.++++.+ .....-.|+++....-.+..+...++++-..-+..|+...+.+ .++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 69999999999999999998 6788899999999888888887777654344566777665322 45899999
Q ss_pred ccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 017428 232 SMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (371)
Q Consensus 232 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (371)
+.+++|-.+ ..+.+++.+.++|+|||.|++......+.... ..-+......++.-...++ ..+.+++.++.+++
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t-s~SN~~FD~sLr~rdp~~G---iRD~e~v~~lA~~~ 183 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT-SESNAAFDASLRSRDPEWG---IRDIEDVEALAAAH 183 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC-CcHHHHHHHHHhcCCCCcC---ccCHHHHHHHHHHC
Confidence 999997764 34789999999999999999987433221110 0111122223333333444 45899999999999
Q ss_pred CCceEEEEecCCc
Q 017428 310 SLEDIKAEDWSQN 322 (371)
Q Consensus 310 GF~~v~~~~~~~~ 322 (371)
|++.++..+...+
T Consensus 184 GL~l~~~~~MPAN 196 (204)
T PF06080_consen 184 GLELEEDIDMPAN 196 (204)
T ss_pred CCccCcccccCCC
Confidence 9998887665543
No 106
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.8e-12 Score=110.21 Aligned_cols=111 Identities=21% Similarity=0.355 Sum_probs=98.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
..++..+++.+ +.+|||.|+|+|.++..|+... ..+|+.+|+.++..+.|+++++..++.+++.+...|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 45666777775 9999999999999999999866 3799999999999999999999999988899999999887
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+++ .||+|+. -++++..+++++.+.|+|||.+++...
T Consensus 159 ~~~~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 159 IDEE-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccc-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence 6554 8999987 458999999999999999999999763
No 107
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=1.3e-11 Score=108.02 Aligned_cols=107 Identities=18% Similarity=0.230 Sum_probs=88.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH------H-----cCCCCCeEEEEcCCCCCCCC---C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA------A-----RGLADKVSFQVGDALQQPFP---D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~------~-----~~~~~~v~~~~~d~~~~~~~---~ 224 (371)
+.+||+.|||.|.-+..|+++ |.+|+|+|+|+..++.+.+... . .--..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 689999999999999999997 8899999999999998755210 0 00124799999999998532 3
Q ss_pred CccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+.||+|+-..++++++. ..+.++.+.++|+|||.+++..+..
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 68999999999999954 4789999999999999999987643
No 108
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.42 E-value=2.4e-13 Score=126.89 Aligned_cols=227 Identities=30% Similarity=0.401 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHhcccchhhHhhhcccccccccCCCCCcCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 017428 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (371)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~ 171 (371)
...+.+.+..+|+...++|...|+..+|.+.+-... ... ..-..+..+..+ ..... ++..++|+|||-|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~-~~~--~~~~~~~~~~~l--~~~~~-----~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGN-SNE--MFWIRHEGIVAL--RESCF-----PGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCccchh-HHH--HHHHhhcchHHH--hhcCc-----ccccccccCcCcCc
Confidence 456667799999999999999999999987662221 110 011111111111 12222 36789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCHHHHHHHHHH
Q 017428 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (371)
Q Consensus 172 ~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~ 251 (371)
...+++...++.++|+|.++.++..+.......++..+..++..|+.+.|++++.||.+.+..+.+|.++...++++++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886578999999999999999999888888888888999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCccc--CccHH
Q 017428 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA--PFWPA 329 (371)
Q Consensus 252 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~--~~~~~ 329 (371)
+++|||..+..+++.......... ........+..+...+......++-++++..||..+..+....... +|+..
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~~~~s~~w~~~ 280 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLALKSSFPWNTP 280 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhcccccCCCccccccc
Confidence 999999999998865433221111 1112222222222233233455677899999999888655544443 46554
Q ss_pred HH
Q 017428 330 VI 331 (371)
Q Consensus 330 ~~ 331 (371)
..
T Consensus 281 ~~ 282 (364)
T KOG1269|consen 281 LT 282 (364)
T ss_pred cc
Confidence 44
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.41 E-value=1.5e-12 Score=113.21 Aligned_cols=114 Identities=23% Similarity=0.341 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
+-.+...+++.+.+++ +.+|||||||+|..+..++...+ ..|+++|..+...+.|++++...++ .|+.++.+
T Consensus 57 ~P~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~g 130 (209)
T PF01135_consen 57 APSMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVG 130 (209)
T ss_dssp -HHHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES
T ss_pred HHHHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEc
Confidence 3446778888888776 99999999999999999998764 3699999999999999999999887 48999999
Q ss_pred CCCCCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|.....-..++||.|++......++ ..+.+.|++||+|++..
T Consensus 131 dg~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 131 DGSEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp -GGGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred chhhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 9866433457899999988776544 24677899999999965
No 110
>PHA03411 putative methyltransferase; Provisional
Probab=99.41 E-value=5.2e-12 Score=112.57 Aligned_cols=124 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
..+|||+|||+|.++..++.+. +.+|+|+|+++.+++.+++++ +++.++.+|+.+.. ..++||+|+++-.++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 5789999999999999888875 579999999999999998753 36889999998865 347899999988887
Q ss_pred CcCC--------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCC
Q 017428 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 238 ~~~~--------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
+... ..+++.....+|+|+|.++++-.+.+. ++ .-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------------------y~--~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------------------YD--GTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------------------cc--ccC
Confidence 7521 135667778899999987776211110 11 125
Q ss_pred CHHHHHHHHHhCCCce
Q 017428 298 STADYVKLLQSLSLED 313 (371)
Q Consensus 298 ~~~~~~~ll~~aGF~~ 313 (371)
++++++++|+++||..
T Consensus 194 ~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 194 KSNKYLKWSKQTGLVT 209 (279)
T ss_pred CHHHHHHHHHhcCcEe
Confidence 7999999999999983
No 111
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.41 E-value=6.7e-12 Score=112.63 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
.++....... ..+|||||+|+|.++..+++++ +.+++.+|+ |..++.+++ .++++++.+|+. .++
T Consensus 91 ~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 91 ILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCC
T ss_pred hhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhh
Confidence 3444544443 6789999999999999999999 789999999 888888887 379999999998 566
Q ss_pred CCCccceEEccccccCcCCH--HHHHHHHHHhcCCC--cEEEEEeccCCCCCcCccccC-hHHHHHHHHHhhccCCCCCC
Q 017428 223 PDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAWC 297 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (371)
|. +|+|++.++||++++. ..+|+++++.|+|| |+|+|.+...+.......... .....+.--.... + .-+
T Consensus 157 P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~r 231 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KER 231 (241)
T ss_dssp SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-E
T ss_pred cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CCc
Confidence 65 9999999999999764 68999999999999 999999986554332221110 0011111111111 2 235
Q ss_pred CHHHHHHHHH
Q 017428 298 STADYVKLLQ 307 (371)
Q Consensus 298 ~~~~~~~ll~ 307 (371)
|.++|+++|+
T Consensus 232 t~~e~~~ll~ 241 (241)
T PF00891_consen 232 TEEEWEALLK 241 (241)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999998874
No 112
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.40 E-value=8.7e-12 Score=122.83 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc-
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG- 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l- 236 (371)
+.+|||+|||+|.+++.++..+ +++|+++|+|+.+++.|+++++..++.+++.++.+|+.+. ++.++||+|+++--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 5689999999999999999876 6799999999999999999999888877899999997652 345689999984211
Q ss_pred -------------cCc--------C----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhcc
Q 017428 237 -------------EHM--------P----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (371)
Q Consensus 237 -------------~~~--------~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (371)
.|- . ....+++++.++|+|||.+++.. .
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g-------------------------- 270 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-G-------------------------- 270 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-C--------------------------
Confidence 110 1 12457788899999999998742 1
Q ss_pred CCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+...+.+.+++++.||..+.+
T Consensus 271 ----~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 271 ----FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred ----CchHHHHHHHHHhcCCCceEE
Confidence 113556777888888876543
No 113
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.39 E-value=5.3e-12 Score=111.94 Aligned_cols=138 Identities=22% Similarity=0.333 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
-+..++..+.+.+ +.+|||.|+|+|.++..+++.. ..+|+..|+.++..+.|+++++..|++.++.+.+.|+.
T Consensus 28 D~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 28 DISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred hHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3456777888876 9999999999999999999877 46999999999999999999999999999999999997
Q ss_pred CCCCC---CCccceEEccccccCcCCHHHHHHHHHHhc-CCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 219 QQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 219 ~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
+..+. +..+|+|+. -++++..++..+.++| ||||++++...+..
T Consensus 103 ~~g~~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------------- 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------------- 150 (247)
T ss_dssp CG--STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH---------------------------
T ss_pred cccccccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH---------------------------
Confidence 65442 367999987 4589999999999999 89999999764311
Q ss_pred CCCCHHHHHHHHHhCCCceEEEEe
Q 017428 295 AWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.....+.|++.||..+++.+
T Consensus 151 ---Qv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 151 ---QVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp ---HHHHHHHHHHHTTEEEEEEEE
T ss_pred ---HHHHHHHHHHHCCCeeeEEEE
Confidence 123345678889999887644
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=4.5e-12 Score=117.23 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+...++..+.+++ +.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|+++++..++ .++.++.+|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4556666666554 78999999999999999998763 4799999999999999999998887 57999999987
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
......++||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 654445789999987655443 235678999999988853
No 115
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.39 E-value=5.1e-12 Score=106.72 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
..+..+.++.++.+.++. ..+.-|||||||+|..+..+.+. |...+|+|+|+.|++.|.++--. -.++.+
T Consensus 31 ~IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~ 100 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILC 100 (270)
T ss_pred eehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeee
Confidence 445667777777777654 24678999999999999998876 78999999999999999874322 236777
Q ss_pred CCC-CCCCCCCccceEEccccccCc-------CCH----HHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DAL-QQPFPDGQFDLVWSMESGEHM-------PDK----SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~-~~~~~~~~fD~v~~~~~l~~~-------~~~----~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+- -+||..++||.+|+..++.++ .++ ..++..++.+|++|++.++.-
T Consensus 101 DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 101 DMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred ecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 775 468999999999987766554 222 357888999999999998864
No 116
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.35 E-value=2.2e-11 Score=106.74 Aligned_cols=152 Identities=22% Similarity=0.301 Sum_probs=107.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-cC----------CCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-RG----------LADK 209 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~----------~~~~ 209 (371)
.+.+++..+..++ +.+||..|||.|.-+..|+++ |.+|+|+|+|+..++.+.+.... .. -..+
T Consensus 25 ~L~~~~~~l~~~~-----~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 25 ALVEYLDSLALKP-----GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHHTTST-----SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHhcCCCC-----CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 3344444444443 789999999999999999997 88999999999999988443211 00 1236
Q ss_pred eEEEEcCCCCCCCC-CCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHH
Q 017428 210 VSFQVGDALQQPFP-DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (371)
Q Consensus 210 v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (371)
|++.++|+.+++.. .++||+|+=..+++.++ .+.+..+.+.++|+|||.+++....++....
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------- 163 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------- 163 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------
Confidence 88999999997533 25799999999998884 4689999999999999996555543332110
Q ss_pred HhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 287 ICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
.+.|...+.+++.+++. .+|++...+.
T Consensus 164 ----~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 ----EGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ----SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred ----CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 12222357889999998 8999888776
No 117
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.35 E-value=3.3e-12 Score=109.61 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=73.4
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 240 (371)
.++|+|||+|..++.+++.+ .+|+|+|+|+.|++.|++.....-......+...++.++--.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 5899999999999998875322211111222233333332237999999999999876
Q ss_pred CHHHHHHHHHHhcCCCcEEEE
Q 017428 241 DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 241 ~~~~~l~~~~~~LkpgG~l~i 261 (371)
|.++++++++|+||+.|-++.
T Consensus 114 dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEE
Confidence 778999999999998885444
No 118
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=6.6e-11 Score=107.83 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=94.7
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc--c
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG--E 237 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l--~ 237 (371)
+|||+|||+|..++.++... .+.|+|+|+|+..++.|++++..+++ .++.++..|+.+. .. ++||+|+++--. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-LR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-cC-CceeEEEeCCCCCCC
Confidence 79999999999999999987 46999999999999999999999998 6777777776653 22 489999985211 1
Q ss_pred C---c----------------C----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 238 H---M----------------P----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 238 ~---~----------------~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
. . . -..+++.++.+.|+|||++++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 1 0 0 124788889999999888888541
Q ss_pred CCCCHHHHHHHHHhCC-CceEEE
Q 017428 295 AWCSTADYVKLLQSLS-LEDIKA 316 (371)
Q Consensus 295 ~~~~~~~~~~ll~~aG-F~~v~~ 316 (371)
+...+.+.+++.+.| |..+..
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEE
Confidence 234677889999999 665544
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=7.2e-11 Score=106.21 Aligned_cols=101 Identities=24% Similarity=0.351 Sum_probs=78.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.|+++++.++ ++++.+|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5799999999999999999987755 47888998653 2 11357999998642
Q ss_pred ccC------c----------------CC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEH------M----------------PD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~------~----------------~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
... + .+ ...+++.+.++|+|||++++..
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 210 0 01 2477888889999999999864
No 120
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1.3e-11 Score=111.57 Aligned_cols=107 Identities=11% Similarity=0.245 Sum_probs=84.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l 236 (371)
+.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999999887 6799999999999999999876554446899999998653 2123689999975211
Q ss_pred -cCcC---CHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 -~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+ ....+++++.+.|+|||++++..+.
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 1111 1268999999999999999996543
No 121
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.31 E-value=1.3e-11 Score=105.70 Aligned_cols=144 Identities=16% Similarity=0.207 Sum_probs=98.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
...+.||.|+|-|..+..+.-.+-.+|..||+.+..++.|++.+.... +.-.++++..+.+...+.++||+|++-+++.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998765544689999999999999998764421 1236788888887643457999999999999
Q ss_pred CcCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 238 ~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
|++|. ..+|+++...|+|||.+++-+-...... ..+. .-..+-..+.+.+.+++++||++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---~~~D------------~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---DEFD------------EEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---EEEE------------TTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---cccC------------CccCeeecCHHHHHHHHHHcCCEEEE
Confidence 99764 7899999999999999999774322110 0010 00001124788999999999999998
Q ss_pred EE
Q 017428 316 AE 317 (371)
Q Consensus 316 ~~ 317 (371)
.+
T Consensus 199 ~~ 200 (218)
T PF05891_consen 199 EE 200 (218)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 122
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.31 E-value=2e-11 Score=93.44 Aligned_cols=101 Identities=37% Similarity=0.578 Sum_probs=85.0
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEccccccC-
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~l~~- 238 (371)
+|+|+|||+|..+..+++....+++++|+++.++..+++..... ...++.+...|+.+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 48999999999999998833679999999999999988543333 33579999999988653 4578999999999988
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
......+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677889999999999999999875
No 123
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.30 E-value=1e-11 Score=107.30 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
-++.+++.+...+ ....|.|+|||-+.++. .-...|+.+|+.+ .|-+++.+|+.+.
T Consensus 167 Pld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 167 PLDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNV 222 (325)
T ss_pred hHHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCC
Confidence 3455555554443 46789999999997765 2245799999954 4567789999999
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
|+++++.|+++++.+|.. .|+..++.+++|+|+|||.++|.+... .|-+..
T Consensus 223 Pl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~ 273 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVK 273 (325)
T ss_pred cCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHH
Confidence 999999999999888765 789999999999999999999998421 244667
Q ss_pred HHHHHHHhCCCceEEEE
Q 017428 301 DYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~ 317 (371)
.+.+.|...||.+....
T Consensus 274 ~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 274 GFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHcCCeeeehh
Confidence 78899999999977654
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=1.3e-10 Score=112.74 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=85.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|..+..+++.. +..|+++|+++.+++.++++++..|+ ++.++.+|+.+.+ +..++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48899999999999999999986 46999999999999999999998886 4789999998753 3457899999532
Q ss_pred c------ccCcC------C----------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 S------GEHMP------D----------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ~------l~~~~------~----------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
. +.+-+ . ...++..+.++|||||.+++.+.+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1 11111 1 136899999999999999998753
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.30 E-value=5.1e-11 Score=115.59 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=87.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--CCCccceEEcc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~v~~~- 233 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+...+.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 48899999999999999999876 479999999999999999999998875334446677655443 46789999852
Q ss_pred -----ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
+++.+.++ ...++.++.++|||||.|++++.+.
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 34444443 2579999999999999999988654
No 126
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.29 E-value=8.3e-12 Score=105.96 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=114.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
...++|||||-|.....+....-.+++-+|.|-.|++.++..- ..++ .+...++|-+.++|.++++|+|++...+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce--EEEEEecchhcccccccchhhhhhhhhhhh
Confidence 4579999999999999988765457999999999999887531 1222 367788998889999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
+.|.+..+.++...|||+|.++..-+..+.......+++- ...-+..+...++.++....++..+|.+|||....+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqL--AelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQL--AELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhH--HHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 9999999999999999999999877665554432222211 1111111122233345567789999999999976554
No 127
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.29 E-value=5.9e-11 Score=105.63 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=86.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~fD~v 230 (371)
+.+|||+|||+|..+..++... +.+|+++|+++++++.|+++++..++.++++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999999998865 4699999999999999999999999988999999998763 1 124689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
++... -+....++..+.++|+|||.+++-+.
T Consensus 149 fiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87532 13456789999999999999887553
No 128
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.5e-11 Score=106.24 Aligned_cols=103 Identities=26% Similarity=0.322 Sum_probs=86.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||.|.+++.+++.. ..+++-+|.+...++.|++++..+++. +..+...|..+.. . ++||+|+++--+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v-~-~kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPV-E-GKFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccc-c-ccccEEEeCCCcc
Confidence 5699999999999999999988 689999999999999999999998874 4466777765543 3 3999999998887
Q ss_pred CcCCH-----HHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~-----~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.=.+. .+++..+.+.|++||.|.|+--
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 54332 4899999999999999999863
No 129
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.29 E-value=5.3e-11 Score=115.68 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=88.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~ 231 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++..|+.+.+ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 48899999999999999999876 358999999999999999999999984 6999999998765 3457899999
Q ss_pred cc------ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+. .++.+-++ ...++.++.++|||||.|+.++.+
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 63 23333333 257899999999999999988754
No 130
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.27 E-value=1.5e-10 Score=102.57 Aligned_cols=170 Identities=23% Similarity=0.298 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVS 211 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 211 (371)
.......+...+..+.-.. .+.+||||+||.|.......+.. . ..|...|+|+..++..++.++..|+.+-++
T Consensus 116 k~~l~~~i~~ai~~L~~~g----~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQG----RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHhcC----CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 3344444555554443222 47899999999999988888877 2 689999999999999999999999976669
Q ss_pred EEEcCCCCCC-C--CCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHH
Q 017428 212 FQVGDALQQP-F--PDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK 285 (371)
Q Consensus 212 ~~~~d~~~~~-~--~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 285 (371)
|.++|+.+.. + -+-..++++.+..++.++|. ...+.-+.+.+.|||+|+.+.-.... . + +.....+.
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP---Q---l-e~IAr~Lt 264 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP---Q---L-EMIARVLT 264 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc---c---h-HHHHHHHh
Confidence 9999998742 1 13457999999999999884 46788999999999999997622111 1 1 11122222
Q ss_pred HH--hhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 286 KI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
.. ...|-. ...+..++.++.+.+||.-++.
T Consensus 265 sHr~g~~WvM-RrRsq~EmD~Lv~~aGF~K~~q 296 (311)
T PF12147_consen 265 SHRDGKAWVM-RRRSQAEMDQLVEAAGFEKIDQ 296 (311)
T ss_pred cccCCCceEE-EecCHHHHHHHHHHcCCchhhh
Confidence 11 112222 2479999999999999985543
No 131
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=1.2e-10 Score=113.64 Aligned_cols=106 Identities=19% Similarity=0.322 Sum_probs=86.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~-- 233 (371)
++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++++..|+ .++.++.+|+...+ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 47899999999999999998865 46899999999999999999999988 47999999998765 45789999952
Q ss_pred -ccccCc---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 -ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 -~~l~~~---~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
....++ ++ ...++.++.++|||||++++.+.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111111 11 136899999999999999998754
No 132
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.25 E-value=1.1e-10 Score=102.37 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
...++||||+|.|..+..++..+ .+|++.+.|+.|....++ .|. + +.|..+..-.+.+||+|.|.++|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~----kg~----~--vl~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSK----KGF----T--VLDIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHh----CCC----e--EEehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999876 479999999999655443 442 2 233333333356899999999999
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.-.+|..+++.+++.|+|+|+++++-
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 98999999999999999999999965
No 133
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.2e-10 Score=112.85 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.+.+.|+..++ +..++||.|++.-
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 48899999999999999999876 579999999999999999999999984 6999999998765 4467899998632
Q ss_pred ---cccCc---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 ---SGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 ---~l~~~---~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+..+ ++ ..+++.++.+.|||||.|+.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22222 11 146799999999999999998765
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.24 E-value=1.1e-10 Score=106.07 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=86.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc-
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME- 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~- 234 (371)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.+...|+...+...+.||+|++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 48899999999999999998876 35899999999999999999999988 479999999877654456799998632
Q ss_pred -----cccCcCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 235 -----SGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 235 -----~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
++.+-++ ...+++++.++|||||+|+..+.+
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1111111 135899999999999999887643
No 135
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=2.1e-10 Score=98.89 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=72.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+|||+|||+|.++..+++.+ ..+|+++|+++.+ .. +++.++..|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3579999999864 12 46888999987642 346789
Q ss_pred ceEEcccccc--------Cc---CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGE--------HM---PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~--------~~---~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|++....+ |. .+...++.++.++|+|||.+++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 11 113678999999999999999964
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=3.5e-10 Score=110.45 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=85.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~ 233 (371)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+. ++.++.+|+.+.. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 37899999999999999999876 479999999999999999999999885 5999999998753 33 789999974
Q ss_pred cc------ccCcCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ES------GEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~------l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-- +.+-++ ...++.++.++|||||.|+..+.
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 32 111111 13579999999999999997664
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1.8e-10 Score=97.60 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=82.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (371)
+.+++.+...+ +.+|||+|||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.+.++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555544 789999999999999999988 78999999999999999988754 2489999999999887
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHh--cCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 263 (371)
++..||.|+++--+ ++. ..++.++.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 76679999886544 332 2344444433 34677776653
No 138
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.23 E-value=1.2e-10 Score=119.34 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=100.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+|||+|.+++.++.. ++ +|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.- ...++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 789999999999999999986 54 6999999999999999999999885 58999999986631 11468999998521
Q ss_pred -----------ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHH
Q 017428 236 -----------GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (371)
Q Consensus 236 -----------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (371)
.....+...++..+.++|+|||.+++.... .. ++. ..+
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~-~~----------------------------~~~--~~~ 666 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK-RG----------------------------FKM--DEE 666 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC-cc----------------------------CCh--hHH
Confidence 111234567889999999999999876421 10 111 167
Q ss_pred HHHhCCCceEEEEecCCc
Q 017428 305 LLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 305 ll~~aGF~~v~~~~~~~~ 322 (371)
.+.++|+....+.....+
T Consensus 667 ~~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLP 684 (702)
T ss_pred HHHhCCCeEEEEecCCCC
Confidence 788899998877765544
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.20 E-value=1.4e-10 Score=100.58 Aligned_cols=118 Identities=26% Similarity=0.414 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
....+++..++.... +.+||||||++|..++.+++.+ +++|+.+|++++..+.|++.++..|+.++|+++
T Consensus 31 ~~~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 31 PETGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred HHHHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344456666665443 7899999999999999999876 589999999999999999999999998899999
Q ss_pred EcCCCCC-C-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+|+.+. + .+.++||+|+.-.. -.+....+..+.++|+|||.+++-+.
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EeccHhhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEEccc
Confidence 9998653 1 12368999998652 24567889999999999999998664
No 140
>PRK00811 spermidine synthase; Provisional
Probab=99.20 E-value=1.4e-10 Score=106.27 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~v~~ 232 (371)
+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++.+...+ . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 6899999999999999998764 4689999999999999999886432 1 46899999998763 224578999998
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...-...+. ...+++.+++.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 643322221 2678899999999999988753
No 141
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.19 E-value=1.1e-10 Score=108.39 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCCC----CCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQP----FPD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~~----~~~ 224 (371)
++.+|||+|||-|+-..-....--..++|+|++...++.|+++.+... ..-...|+.+|..... +++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998886666555434689999999999999999983311 1124678888876531 333
Q ss_pred --CccceEEccccccCc-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 017428 225 --GQFDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 225 --~~fD~v~~~~~l~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..||+|-|..++|+. .+ ...+++++...|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999987 32 35699999999999999999874
No 142
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=4.9e-10 Score=97.11 Aligned_cols=107 Identities=25% Similarity=0.426 Sum_probs=90.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCC-C-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ-P-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~-~-~~~~~fD~v~~~ 233 (371)
+.+|||||++.|..++.++... ..+++.+|+++++.+.|+++++..|+.+++..+. +|..+. . ...++||+|+.-
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFID 139 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFID 139 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEe
Confidence 7899999999999999999987 4689999999999999999999999998899888 476553 1 346999999976
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
.. -.+.+.+++.+.++|+|||.+++-......
T Consensus 140 ad---K~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 140 AD---KADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CC---hhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 32 134578999999999999999997755443
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.17 E-value=3.2e-10 Score=105.03 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--H---HHcCC-CCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--A---AARGL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~---~~~~~-~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
+.+||+||||+|..+..+++.. ..+|++||+++.+++.|++. + .+... .++++++.+|+.+. ....+.||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999998888754 36899999999999999962 1 11111 46899999998763 3345789999
Q ss_pred Ecccccc---CcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGE---HMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~---~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++...-. .... -..+++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9863211 0111 1578999999999999988863
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.17 E-value=8.6e-10 Score=107.60 Aligned_cols=117 Identities=23% Similarity=0.374 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+++.++..+...+ +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++.+++ .+++++.+
T Consensus 280 ~~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~ 352 (443)
T PRK13168 280 QVNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 334556677777665543 789999999999999999987 57999999999999999999998887 47999999
Q ss_pred CCCCC----CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. ++.+++||+|++.---.. ....++.+.+ ++|++.+++.-
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 98653 244568999987532221 2345555555 68988888764
No 145
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.16 E-value=2.8e-10 Score=108.58 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~fD~v~~~ 233 (371)
+.+|||+|||+|.+++.++.....+|+++|+|+.+++.|+++++.+++. .+++++.+|+.+.- + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999988766542348999999999999999999999885 47999999987641 1 24689999986
Q ss_pred ccccCc---------CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHM---------PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
--...- .+...++..+.++|+|||.|+.+..
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 332111 1234566678899999999998764
No 146
>PLN02476 O-methyltransferase
Probab=99.16 E-value=6.3e-10 Score=100.31 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~----~~~~fD~v 230 (371)
+.+|||||+|+|..++.++... +.+|+.+|.+++..+.|++.++..|+.++++++.+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 4689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.-.- -.+...+++.+.++|+|||.+++-+.
T Consensus 199 FIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 199 FVDAD---KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 97642 13457889999999999999888654
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.15 E-value=8.6e-10 Score=115.49 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=96.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 222 (371)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|+++++.+++ .++++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999987 47999999999999999999987643 2479999999876431
Q ss_pred C-CCccceEEcccccc--------------C--------------c------CC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 223 P-DGQFDLVWSMESGE--------------H--------------M------PD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~-~~~fD~v~~~~~l~--------------~--------------~------~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...||+|+++--.- | + .| ..+++.++.++|+|||++++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 23699999852110 0 0 11 2567888889999999888643
Q ss_pred ccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH-HHHHhCCCceEEEEecC
Q 017428 264 WCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV-KLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~aGF~~v~~~~~~ 320 (371)
. ....+.+. +++++.||..+.+...+
T Consensus 279 -G------------------------------~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 -G------------------------------GRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred -C------------------------------ccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 1 11244566 58888888877665443
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=1e-09 Score=94.33 Aligned_cols=146 Identities=23% Similarity=0.431 Sum_probs=94.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------------------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-------------------------------- 205 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~-------------------------------- 205 (371)
+..+|||||..|.++..+++.+ ...|.|+|+++..+..|++.+.-..
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t 138 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFT 138 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccccc
Confidence 6789999999999999999999 4579999999999999998754220
Q ss_pred --CCCCeEE-------EEcCCCCCCCCCCccceEEccccccCc----CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 017428 206 --LADKVSF-------QVGDALQQPFPDGQFDLVWSMESGEHM----PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (371)
Q Consensus 206 --~~~~v~~-------~~~d~~~~~~~~~~fD~v~~~~~l~~~----~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 270 (371)
.|.++.| ...|+. .+....||+|+|..+-.++ .| ..+++++++++|.|||+|++---..
T Consensus 139 ~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW---- 212 (288)
T KOG2899|consen 139 TDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW---- 212 (288)
T ss_pred ccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch----
Confidence 0111111 111222 1234679999886554333 22 4789999999999999999842111
Q ss_pred cCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCceEE
Q 017428 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDIK 315 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--GF~~v~ 315 (371)
..+.. ..+..... ...+..-+..++.+..+|.+. ||+-++
T Consensus 213 ---ksY~k-aar~~e~~-~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 213 ---KSYKK-AARRSEKL-AANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred ---HHHHH-HHHHHHHh-hcCccceecCHHHHHhhhhhhhhheeeec
Confidence 11111 12222222 222233357899999999886 666444
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.10 E-value=6.4e-10 Score=96.01 Aligned_cols=103 Identities=30% Similarity=0.456 Sum_probs=82.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~v~~~~~ 235 (371)
..+||||||.|.+...+|... +..++|+|++...+..+.+++...++ .|+.++.+|+... . ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999998 78999999999999999999999888 6999999999873 2 45689999988654
Q ss_pred ccCcCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
=-+... -..++..+.++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 333221 1479999999999999999976
No 150
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.09 E-value=6.6e-09 Score=95.88 Aligned_cols=152 Identities=14% Similarity=0.210 Sum_probs=97.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEE-cCCCCCC----CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQV-GDALQQP----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~----~~~~~fD~v 230 (371)
+..+|||||||+|.....++.+. +.+++|+|+++.+++.|+++++.+ ++..++.+.. .|..++. .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46899999999998887777665 789999999999999999999999 7888888864 3332221 245789999
Q ss_pred EccccccCcCCH-----HHHHHHHH----------------HhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhh
Q 017428 231 WSMESGEHMPDK-----SKFVSELA----------------RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (371)
Q Consensus 231 ~~~~~l~~~~~~-----~~~l~~~~----------------~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
+|+=-++.-.+. .+-.+++. +++.+||.+.++... ......+... .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~m-----------i~eS~~~~~~--~ 260 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRM-----------IEESKAFAKQ--V 260 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHh-----------hHHHHHHHhh--C
Confidence 998665532211 11222222 333455555443311 0111111111 1
Q ss_pred ccC---CCCCCCHHHHHHHHHhCCCceEEEEecCCc
Q 017428 290 AYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (371)
Q Consensus 290 ~~~---~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 322 (371)
.+. ...--+.+.+.+.|++.|...+.+.++...
T Consensus 261 gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG 296 (321)
T PRK11727 261 LWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQG 296 (321)
T ss_pred cEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCC
Confidence 111 112247889999999999988877766544
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.09 E-value=5.7e-10 Score=94.67 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=75.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~fD~v 230 (371)
++.+|||||||+|..++.++... ..+|+..|..+ .++..+.+++.++ ...++.+...|..+.. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 47899999999999999999874 67999999999 9999999998876 5578999999886631 334689999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++..+++.-...+.+++.+.++|+|+|.+++..
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987788999999999999999977765
No 152
>PRK03612 spermidine synthase; Provisional
Probab=99.08 E-value=9.5e-10 Score=109.07 Aligned_cols=105 Identities=23% Similarity=0.281 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
+.+|||||||+|..+..+++... .+|+++|+++++++.++++ +... .. .++++++.+|..+. ...+++||+|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvI 377 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVI 377 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEE
Confidence 68999999999999999987533 6999999999999999983 3221 11 25899999998763 2234789999
Q ss_pred EccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.......+. ..++++.+++.|||||.+++..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 98754332221 1468999999999999998864
No 153
>PLN02366 spermidine synthase
Probab=99.07 E-value=1.5e-09 Score=99.95 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=81.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.+++.+...+ + .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998764 3589999999999999999876532 2 36899999997543 123578999998
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...-.+.+. ...+++.+++.|+|||.+++..
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 543322221 2578999999999999997753
No 154
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.06 E-value=1.5e-09 Score=96.65 Aligned_cols=115 Identities=18% Similarity=0.262 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
..+++..++.... ..+|||||+++|..++.++... +.+|+.+|.+++..+.|++.++..|+.++|+++.+
T Consensus 67 ~g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 67 EGQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 3445555555443 6899999999999999999876 57999999999999999999999999999999999
Q ss_pred CCCCC-C-C-----CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~-~-~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. + + ..++||+|+.-.- -......++.+.++|+|||.+++-+
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 98663 2 1 1368999998642 2345678888999999999988744
No 155
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.06 E-value=1.6e-09 Score=98.79 Aligned_cols=104 Identities=18% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.+++.+...+ -.++++++.+|.... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999888765 4689999999999999999875432 125788888887552 1124789999986
Q ss_pred ccccCcC--C--HHHHHHHHHHhcCCCcEEEEE
Q 017428 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.....-+ + ...+++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 2 367899999999999999986
No 156
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=2.2e-09 Score=100.09 Aligned_cols=115 Identities=23% Similarity=0.252 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
...+++.+.+++... ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ ++++|+++|+
T Consensus 158 ~~~l~~~v~~~l~~~-----~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~ 230 (315)
T PRK03522 158 AAQLYATARDWVREL-----PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDS 230 (315)
T ss_pred HHHHHHHHHHHHHhc-----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCH
Confidence 344444444444322 2689999999999999999986 68999999999999999999999988 6899999999
Q ss_pred CCCCC-CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 218 LQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 218 ~~~~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+... ..+.||+|++.---..+ ...+++ +...++|++.+++.
T Consensus 231 ~~~~~~~~~~~D~Vv~dPPr~G~--~~~~~~-~l~~~~~~~ivyvs 273 (315)
T PRK03522 231 TQFATAQGEVPDLVLVNPPRRGI--GKELCD-YLSQMAPRFILYSS 273 (315)
T ss_pred HHHHHhcCCCCeEEEECCCCCCc--cHHHHH-HHHHcCCCeEEEEE
Confidence 77532 23579999986321111 123333 33446787766664
No 157
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.05 E-value=5.8e-09 Score=90.13 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=78.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||+|||+|.+++.++.+...+|+++|.++..++.++++++..++ .++.++.+|+.+. +...++||+|++.--+.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999998887 4799999998663 22245799999875532
Q ss_pred CcCCHHHHHHHHHH--hcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~--~LkpgG~l~i~~ 263 (371)
. .-...+++.+.. +|+|+|++++..
T Consensus 133 ~-g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 K-GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred C-ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 1 223455555554 378988888764
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.04 E-value=7.1e-09 Score=101.00 Aligned_cols=117 Identities=19% Similarity=0.311 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....++..++..+.+.+ +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ .+++|+.+
T Consensus 275 ~~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~ 347 (431)
T TIGR00479 275 GQNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAG 347 (431)
T ss_pred HHHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeC
Confidence 344455666666655443 689999999999999999987 56899999999999999999998887 58999999
Q ss_pred CCCCC----CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 216 DALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 216 d~~~~----~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
|+.+. ++.+++||+|++.-.-. .-...+++.+.+ ++|++.+++.
T Consensus 348 d~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 348 TLETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CHHHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 98652 23346799998643211 112455665554 8898877764
No 159
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.01 E-value=2e-08 Score=91.77 Aligned_cols=151 Identities=22% Similarity=0.231 Sum_probs=109.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
-...+|+|.|.|..+..+...+ .+|-++++....+..++..+. +.|+.+-+|+.+. .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-----~gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-----PGVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-----CCcceeccccccc-CCCc--CeEEEEeeccc
Confidence 4679999999999999999865 469999999888877776553 2388889998876 4544 69999999999
Q ss_pred cCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCcCc---cccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSE---ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 239 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
++|. .++|++++..|+|||.+++.|...+...... ...... .+.+.......+. -.+..+++.++.++||.+
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~-~d~lm~~~~~~Gk--ert~~e~q~l~~~~gF~~ 325 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRD-MDLLMLTQTSGGK--ERTLKEFQALLPEEGFPV 325 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeeh-hHHHHHHHhccce--eccHHHHHhcchhhcCce
Confidence 9764 7999999999999999999997444311111 111111 1222222222222 248999999999999998
Q ss_pred EEEEecCC
Q 017428 314 IKAEDWSQ 321 (371)
Q Consensus 314 v~~~~~~~ 321 (371)
..+.....
T Consensus 326 ~~~~~~~~ 333 (342)
T KOG3178|consen 326 CMVALTAY 333 (342)
T ss_pred eEEEeccC
Confidence 87765433
No 160
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.00 E-value=3.4e-09 Score=94.77 Aligned_cols=107 Identities=22% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCC------CCCCCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-----DKVSFQVGDALQQ------PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~------~~~~~~ 226 (371)
++..++|+|||-|+-++..-+..-..++|+|+++..++.|+++.+...-. -.+.|+.+|.... ++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 37789999999999887776653358999999999999999987755211 1378899987542 334555
Q ss_pred cceEEccccccCc-C---CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHM-P---DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+|-|-.++|+- . ....+++++.+.|+|||+++-+.+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999888888765 2 346789999999999999998763
No 161
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.99 E-value=2.5e-09 Score=92.07 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHH--------------HHc-----C---
Q 017428 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALA--------------AAR-----G--- 205 (371)
Q Consensus 158 ~~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~--------------~~~-----~--- 205 (371)
+..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-. ++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 36899999999998 444555522 258999999999999987531 000 0
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 206 -----~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.+|.|...|+.+.+.+.+.||+|+|++++.++... ..+++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1246999999998843346889999999999999654 789999999999999999964
No 162
>PHA03412 putative methyltransferase; Provisional
Probab=98.99 E-value=2.7e-09 Score=93.23 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.++..|+...++ +++||+|+++-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998763 358999999999999999764 358899999987654 57899999975
Q ss_pred cccCc--CC----------HHHHHHHHHHhcCCCcE
Q 017428 235 SGEHM--PD----------KSKFVSELARVTAPAGT 258 (371)
Q Consensus 235 ~l~~~--~~----------~~~~l~~~~~~LkpgG~ 258 (371)
-+.-. .+ ...+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 44322 11 34688888986676664
No 163
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.98 E-value=1.7e-09 Score=98.40 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+++.|||+|||||.++...++....+|++||-|..+ +.|++.+..+++.+.++++.+.+++..+|.++.|+|++-++=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 378999999999999999999855689999998866 9999999999998889999999999877778999999865443
Q ss_pred Cc--C-CHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HM--P-DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~--~-~~~~~l~~~~~~LkpgG~l~i 261 (371)
.+ + -...++-.=-+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 33 2 235566666789999998763
No 164
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.97 E-value=1.4e-09 Score=98.79 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=82.2
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHH------------------H--------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALAA------------------A-------- 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~------------------~-------- 203 (371)
..+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-.- .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999998 444454532 2579999999999999987520 0
Q ss_pred ----cCCCCCeEEEEcCCCCCCCC-CCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEe
Q 017428 204 ----RGLADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 204 ----~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+-..|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01224688999999885543 588999999999999954 5889999999999999988854
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=92.57 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=99.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCC--CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~--~~~~~~fD~v~~~ 233 (371)
.+.+|||...|-|..++..+++ |+ +|+.++.++..++.|.-+-=..+ ...+++++.+|+.+. .+++++||+|+--
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4899999999999999999998 77 99999999999988765311111 113578999998775 4789999999852
Q ss_pred c-cccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 017428 234 E-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (371)
Q Consensus 234 ~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (371)
- -+.+... -..+.++++|+|||||.++-..-...... . ..--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry--------------------r---G~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY--------------------R---GLDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc--------------------c---cCChhHHHHHHHHhcC
Confidence 1 1111122 26899999999999999998763322111 0 1124667889999999
Q ss_pred CceEEEE
Q 017428 311 LEDIKAE 317 (371)
Q Consensus 311 F~~v~~~ 317 (371)
|.+|...
T Consensus 270 F~~v~~~ 276 (287)
T COG2521 270 FEVVKKV 276 (287)
T ss_pred ceeeeee
Confidence 9987764
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=3e-08 Score=82.67 Aligned_cols=125 Identities=20% Similarity=0.152 Sum_probs=90.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+..|+|+|||||.+++..+-.....|+++|+++++++.++++..+.+ .++.|..+|+.+.. +.||.++.+--+..
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~--g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL--GDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC--CceEEEEcchhhcC---CccceEEECCCCcc
Confidence 77899999999999998877534789999999999999999998843 68999999998864 67898888755443
Q ss_pred c---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 239 ~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
. .|+ .++..+.+.- -+++-.. ...+.+-+++..+++|+.+..
T Consensus 121 ~~rhaDr-~Fl~~Ale~s---~vVYsiH-------------------------------~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHADR-PFLLKALEIS---DVVYSIH-------------------------------KAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCCH-HHHHHHHHhh---heEEEee-------------------------------ccccHHHHHHHHHhcCCeEEE
Confidence 3 333 4555555542 1111110 112677788899999998877
Q ss_pred EEecCCcc
Q 017428 316 AEDWSQNV 323 (371)
Q Consensus 316 ~~~~~~~~ 323 (371)
.....-++
T Consensus 166 ~~~~~~~i 173 (198)
T COG2263 166 IERARFPI 173 (198)
T ss_pred EEEEEEec
Confidence 65544444
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.93 E-value=6.9e-09 Score=91.10 Aligned_cols=103 Identities=24% Similarity=0.352 Sum_probs=88.0
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--C-CCCCccceEEcccc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-FPDGQFDLVWSMES 235 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-~~~~~fD~v~~~~~ 235 (371)
..+||||||.|.+...+|++. ...++|||+....+..|.+++...++. |+.++..|+... . +++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999998 678999999999999999999999985 999999998774 1 34569999998765
Q ss_pred ccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
=-+.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4443221 479999999999999999986
No 168
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=2.3e-08 Score=87.64 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~~ 232 (371)
+..|||+|||+|..+..++..+ .+.|++||.|+.++..|.++++..++.+++.++..+++.. +...+++|++++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 5689999999999999999877 6899999999999999999999999988999887766543 244688999998
Q ss_pred cccccCcC--------------------------CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMP--------------------------DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~--------------------------~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+--.-.-. ....++.-+.|.|+|||.+.+..
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 53221111 11245666789999999988865
No 169
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.90 E-value=3.8e-07 Score=81.83 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC-------------------------C---
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------------------------L--- 206 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~-------------------------~--- 206 (371)
.+.+||--|||.|.++..++.. |..+.|.|.|-.|+-..+-.+.. .+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 4689999999999999999998 88999999999997655443332 00 0
Q ss_pred --------CCCeEEEEcCCCCCCCCC---CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccc
Q 017428 207 --------ADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275 (371)
Q Consensus 207 --------~~~v~~~~~d~~~~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 275 (371)
+.++....+|+.+.-.++ ++||+|+.++.+-..++.-..++.+.++|||||..+=..+-.-...+.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~--- 211 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM--- 211 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC---
Confidence 235667777776653233 789999999888888899999999999999999555432110000000
Q ss_pred cChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEe
Q 017428 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
.......--.+.+++..+++..||+++..+.
T Consensus 212 ------------~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 ------------SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ------------CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000000125899999999999999987765
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.89 E-value=1.4e-08 Score=93.24 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++..+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.+
T Consensus 23 ~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 23 LVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 35667777766654 789999999999999999987 678999999999999999998876655789999999988
Q ss_pred CCCCCCccceEEccccccCcCC
Q 017428 220 QPFPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~ 241 (371)
.++ ..||.|+++.- +++..
T Consensus 97 ~~~--~~~d~VvaNlP-Y~Ist 115 (294)
T PTZ00338 97 TEF--PYFDVCVANVP-YQISS 115 (294)
T ss_pred hcc--cccCEEEecCC-cccCc
Confidence 654 46898887543 34443
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.87 E-value=1e-08 Score=93.53 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++.. ++++++++|+.+.
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 4566666666554 789999999999999999998 56999999999999999887632 5799999999988
Q ss_pred CCCCCccceEEcccc
Q 017428 221 PFPDGQFDLVWSMES 235 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~ 235 (371)
++++-.+|.|+++--
T Consensus 100 ~~~~~~~~~vv~NlP 114 (272)
T PRK00274 100 DLSELQPLKVVANLP 114 (272)
T ss_pred CHHHcCcceEEEeCC
Confidence 754322577777643
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.87 E-value=3.4e-08 Score=80.25 Aligned_cols=101 Identities=21% Similarity=0.201 Sum_probs=86.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccceEE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~v~ 231 (371)
+.-|||+|.|||.++..+.++. ...++.++.|++......+.. +.+.++.+|+.++. +.+..||.|+
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~vi 122 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVI 122 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEE
Confidence 7889999999999999999875 578999999999998888764 56778999988864 5577899999
Q ss_pred ccccccCcCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+..-+-.++- ..++++.+...|.+||.++-...+
T Consensus 123 S~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 123 SGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9987777754 368899999999999999988765
No 173
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.87 E-value=2.8e-08 Score=84.99 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=92.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~~ 234 (371)
...++|||||=+......... -..|+.||+.+. .-.+.+.|+.+.|+| .+.||+|.++.
T Consensus 51 ~~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ccceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence 357999999976554443322 246999999872 234578898887754 68899999999
Q ss_pred cccCcCCH---HHHHHHHHHhcCCCcE-----EEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 235 SGEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 235 ~l~~~~~~---~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
+|.+++++ ...++++++.|+|+|. |+++.+. .- ....++++.+.|..+|
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~-------~C----------------v~NSRy~~~~~l~~im 169 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL-------PC----------------VTNSRYMTEERLREIM 169 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc-------hH----------------hhcccccCHHHHHHHH
Confidence 99999986 5799999999999999 8877521 00 1122467899999999
Q ss_pred HhCCCceEEEEecC
Q 017428 307 QSLSLEDIKAEDWS 320 (371)
Q Consensus 307 ~~aGF~~v~~~~~~ 320 (371)
+..||..+..+.-.
T Consensus 170 ~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 170 ESLGFTRVKYKKSK 183 (219)
T ss_pred HhCCcEEEEEEecC
Confidence 99999998876533
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.86 E-value=1.9e-08 Score=91.13 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
..++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++.+|+.+
T Consensus 16 ~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~ 86 (258)
T PRK14896 16 RVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK 86 (258)
T ss_pred HHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence 35566666666554 789999999999999999998 67999999999999999988754 2589999999998
Q ss_pred CCCCCCccceEEcccccc
Q 017428 220 QPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~ 237 (371)
.+++ .||.|+++...+
T Consensus 87 ~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 87 VDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCch--hceEEEEcCCcc
Confidence 7754 489998876543
No 175
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=3.6e-08 Score=95.46 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
+..|||||||+|.+....++.. ..+|++|+-++.+....+++++.+++.++|+++.+|+++...+ +++|+|++=
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987666542 2589999999999888888888888989999999999998755 689999863
Q ss_pred ccccCc---CCHHHHHHHHHHhcCCCcEEE
Q 017428 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 260 (371)
. +..+ +-....+....|.|||||.++
T Consensus 266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 2222 334678889999999998765
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.85 E-value=3.6e-08 Score=90.35 Aligned_cols=114 Identities=19% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCC
Q 017428 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQP 221 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~ 221 (371)
..++....+++ +..|||-=||||.+++...-. |++++|.|++..|++-|+.+++..++. ...+... |+.++|
T Consensus 187 R~mVNLa~v~~-----G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lp 259 (347)
T COG1041 187 RAMVNLARVKR-----GELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLP 259 (347)
T ss_pred HHHHHHhcccc-----CCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCC
Confidence 33444555554 889999999999999988764 999999999999999999999998864 4544544 999999
Q ss_pred CCCCccceEEcccccc-----CcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 222 FPDGQFDLVWSMESGE-----HMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~-----~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++.++|.|++---.. .... ...+++.+.++|++||++++..
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 9888899998732211 1111 3688999999999999999965
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.84 E-value=3.9e-08 Score=93.72 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....++..+...+... ++.+|||+|||+|.++..++.. +..|+|+|+++.+++.|+++++.+++. +++|+.+
T Consensus 216 ~~~~~l~~~~~~~l~~~-----~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~ 288 (374)
T TIGR02085 216 KVAAQLYATARQWVREI-----PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAAL 288 (374)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEC
Confidence 33444444444444322 2579999999999999999976 689999999999999999999999884 8999999
Q ss_pred CCCCCC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+.. ....+||+|++.---.. -...+++.+. .++|++.+++..
T Consensus 289 d~~~~~~~~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 289 DSAKFATAQMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CHHHHHHhcCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence 987642 11246999988633221 1245555554 479988888764
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.81 E-value=7.7e-08 Score=81.92 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=82.9
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 239 (371)
+|+|||+|.|..++.++=.+ ..+++.+|....-+...+......++. |++++...+++ +....+||+|+++. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~~~~~fd~v~aRA----v 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PEYRESFDVVTARA----V 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TTTTT-EEEEEEES----S
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cccCCCccEEEeeh----h
Confidence 89999999999999998877 679999999999999999999999994 89999999988 44468899999984 4
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 240 PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 240 ~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.....++.-+...|++||.+++.-
T Consensus 125 ~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 577889999999999999999863
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.80 E-value=6.2e-08 Score=86.99 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=82.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cCC-----------------
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RGL----------------- 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~~----------------- 206 (371)
..+|+-.||+||. .++.+.+.+ ..+|+|+|+|...++.|+.-.-. .++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6899999999998 455555554 25899999999999998753211 111
Q ss_pred ------CCCeEEEEcCCCCCCCCCCccceEEccccccCcCCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 207 ------ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 ------~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..|.|...|+...++..+.||+|+|++++.++... .+++..++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 235778888887766345779999999999999654 789999999999999999964
No 180
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.80 E-value=1.1e-07 Score=81.80 Aligned_cols=104 Identities=9% Similarity=-0.070 Sum_probs=77.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-ccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~~~-~fD~v~~~~ 234 (371)
+.+|||++||+|.+++.++.+....|+++|.++.+++.++++++..++..+++++.+|+.+. . + ... .||+|+..-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999843489999999999999999999988866899999998552 1 1 122 367776643
Q ss_pred cccCcCCHHHHHHHHH--HhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 263 (371)
-+. ......++..+. .+|+++|.+++-.
T Consensus 130 Py~-~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PFF-NGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CCC-CCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 332 233445555443 3688888776654
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.80 E-value=8.1e-08 Score=81.89 Aligned_cols=115 Identities=25% Similarity=0.313 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~v 210 (371)
+...++.....++ +..|||--||+|.+.++.+... ... ++|+|+++.+++.|+++++..++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4455556665554 7899999999999999887765 444 889999999999999999999998889
Q ss_pred EEEEcCCCCCCCCCCccceEEccccccCc-CC-------HHHHHHHHHHhcCCCcEEEE
Q 017428 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PD-------KSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~-------~~~~l~~~~~~LkpgG~l~i 261 (371)
.+.+.|+.++++.++++|+|+++--...- .. ...+++++.++|++ ..+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l 148 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFL 148 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEE
Confidence 99999999998777899999997554432 11 14678888999999 33333
No 182
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.80 E-value=1e-07 Score=85.78 Aligned_cols=102 Identities=25% Similarity=0.292 Sum_probs=80.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+..|||+|||+|.++...+.....+|++|+-|. |.++|++.++.+.+.++|.++.+.++++.+| ++.|+||+--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 4788999999999999888887456899999865 9999999999999999999999999998876 7799998743222
Q ss_pred CcCC--HHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMPD--KSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~~--~~~~l~~~~~~LkpgG~l~i 261 (371)
-+-+ .-...-.+++.|||.|..+=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2212 12333456799999998764
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=5.1e-08 Score=82.29 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=80.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC---------CCCeEEEEcCCCCCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---------ADKVSFQVGDALQQPFPDG 225 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~ 225 (371)
|+.+.||+|+|+|.++..++... +..++|||.-++.++.+++++...-- ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 49999999999999999888766 33459999999999999998876531 2468899999988755678
Q ss_pred ccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+||.|++.... ...-+++...|+|||.+++--
T Consensus 162 ~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 99999987433 344567788899999999854
No 184
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.75 E-value=6.2e-08 Score=91.43 Aligned_cols=105 Identities=27% Similarity=0.285 Sum_probs=86.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~v~~ 232 (371)
+.+||++-|=||.++...+.. |+ +|+.||.|...+++|+++++-+|++ .++.|+++|+.+. .-...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 789999999999999999886 66 9999999999999999999999985 4589999998774 123458999997
Q ss_pred cc---------cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 ME---------SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~---------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
-- ......+...++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 21 111224557889999999999999999874
No 185
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=1.7e-07 Score=84.70 Aligned_cols=84 Identities=27% Similarity=0.391 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.+++.+...+ +.+|||+|||+|.++..+++. +..|+++|+++.+++.+++++.. .+++.++.+|+.+.
T Consensus 17 i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 17 VIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 5566677666554 789999999999999999998 46799999999999999887643 25899999999988
Q ss_pred CCCCCccc---eEEcccc
Q 017428 221 PFPDGQFD---LVWSMES 235 (371)
Q Consensus 221 ~~~~~~fD---~v~~~~~ 235 (371)
+++ .|| +|+++..
T Consensus 88 ~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNLP 103 (253)
T ss_pred Chh--HcCCcceEEEcCC
Confidence 754 466 6665543
No 186
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.72 E-value=5.4e-08 Score=86.73 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=92.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~-----------~~v 210 (371)
++.++||||||.-..-..-+...-.+|+..|+++...+..++.++..+. . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 3779999999986553222222234799999999999877776655431 0 013
Q ss_pred -EEEEcCCCCCC-CCC-----CccceEEccccccCc-CCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChH
Q 017428 211 -SFQVGDALQQP-FPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (371)
Q Consensus 211 -~~~~~d~~~~~-~~~-----~~fD~v~~~~~l~~~-~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 279 (371)
.++..|+.+.+ +.. .+||+|++..+++.. +|. ..+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 36678887753 322 359999999999877 344 68899999999999999998754322211100
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEE
Q 017428 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (371)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 317 (371)
..+.. -..+.+.+++.|+++||.+++.+
T Consensus 211 ---------~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 ---------HKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---------EEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred ---------Eeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 00111 13589999999999999998887
No 187
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5e-07 Score=79.31 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=93.2
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+..++..+.+.+ +.+|||-|+|+|.++..+++.. -.+++.+|+...-.+.|.+-++..++++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 345566666665 9999999999999999999987 358999999999999999999999999999999999988
Q ss_pred CCCC--CCccceEEccccccCcCCHHHHHHHHHHhcCCCc-EEEEE
Q 017428 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIV 262 (371)
Q Consensus 220 ~~~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~ 262 (371)
..|. ...+|+|+. -++.+..++-.++.+||.+| +++..
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEec
Confidence 7643 577898876 45788888889999999887 44443
No 188
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=3.1e-07 Score=79.00 Aligned_cols=114 Identities=19% Similarity=0.300 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
...++..+++... +.++||||.=||..+..+|..+ +.+|+++|+++...+.+.+..+..|+...|.++++
T Consensus 61 ~g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred HHHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence 3345666666554 7899999999999999999888 68999999999999999999999999999999999
Q ss_pred CCCCC------CCCCCccceEEccccccCc-CCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ------PFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~------~~~~~~fD~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++.+. ..+.++||+++.- |. .+....+.++.+++|+||.|++-.
T Consensus 133 ~a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 133 PALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred chhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 98663 2356889999875 33 234578899999999999999865
No 189
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=1.8e-07 Score=92.45 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCCC--CCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 137 AQVRMIEETLRFAGVSE--DPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~--~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
.+.+.++..+..+.+.. ........+||||||.|.++..+|..+ ...++|+|++..-+..+.++....++ .|+.++
T Consensus 324 ~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~ 402 (506)
T PRK01544 324 VQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLF 402 (506)
T ss_pred HHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEE
Confidence 45555566555444432 112346789999999999999999998 68899999999999999888888887 589998
Q ss_pred EcCCCCC--CCCCCccceEEccccccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 214 VGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 214 ~~d~~~~--~~~~~~fD~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..|+..+ -++++++|.|++++.=-+.... ..+++.+.++|||||.+.+.+
T Consensus 403 ~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 403 PNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 8887543 3678899999987654443211 579999999999999999975
No 190
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.69 E-value=1e-08 Score=97.57 Aligned_cols=99 Identities=24% Similarity=0.390 Sum_probs=70.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
-..+||+|||+|.++..|.++ +..+..+ |..+.+++.|-+ .|+|.-+ -..--..+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~--~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMI--GVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhh--hhhccccccCCccchhhhhcccc
Confidence 357999999999999999887 4322222 444456666554 3554222 22234578999999999999988
Q ss_pred ccCcC-CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMP-DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+..+. +-.-+|-++.|+|+|||++++...
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCC
Confidence 87663 335678899999999999998753
No 191
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.67 E-value=1e-07 Score=82.10 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=75.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++..|||+.||-|.+++.+++.. +..|+++|++|..++..+++++.+++..++....+|..+... .+.||.|++...-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp~ 179 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLPE 179 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--TS
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECChH
Confidence 48999999999999999999844 678999999999999999999999999889999999988753 6889999886532
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~ 260 (371)
....++..+.+++++||++.
T Consensus 180 ----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 180 ----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEE
T ss_pred ----HHHHHHHHHHHHhcCCcEEE
Confidence 22357888999999998874
No 192
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.7e-06 Score=70.34 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=94.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+..+||||||+|..+..+++.. +..+.++|++|.+++...+.+..++. ++..++.|+.+- +..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence 6789999999999999999877 46789999999999999998888875 578888887663 234889988775322
Q ss_pred cCc-----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC
Q 017428 237 EHM-----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (371)
Q Consensus 237 ~~~-----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (371)
.-- .+ .++++..+-..|.|.|++++.....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------------- 171 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------------- 171 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------
Confidence 111 11 2356667778888999998875211
Q ss_pred CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.++++-++++.-||.......
T Consensus 172 -N~p~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 172 -NKPKEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred -cCHHHHHHHHhhcccceeEEEE
Confidence 1467777888999988665543
No 193
>PLN02823 spermine synthase
Probab=98.66 E-value=1.6e-07 Score=87.60 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=79.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~v~~~ 233 (371)
+.+||.||+|.|..+..+++.. ..+|+.||+++.+++.|++.+...+ -.++++++.+|+... ....++||+|++-
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988854 4689999999999999999875321 146899999998764 3335789999976
Q ss_pred ccccCc----CC---HHHHHH-HHHHhcCCCcEEEEE
Q 017428 234 ESGEHM----PD---KSKFVS-ELARVTAPAGTIIIV 262 (371)
Q Consensus 234 ~~l~~~----~~---~~~~l~-~~~~~LkpgG~l~i~ 262 (371)
.. ... .. -..+++ .+.+.|+|||++++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111 00 246787 899999999998775
No 194
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.65 E-value=2.1e-07 Score=88.49 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+|||++||+|..++.++...+ ..|+++|+++..++.++++++.+++. ++.+...|+.......+.||+|++.- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 48999999999999999999988874 67899999866421146799998853 2
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+..++..+.+.+++||.++++-
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 345678888788899999999973
No 195
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.65 E-value=1.1e-07 Score=83.78 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=85.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (371)
.+..++....+.. ++.+|||+|||||.++..+++....+|+++|+++.|+..... .. +++ .+...|+..
T Consensus 62 kL~~~l~~~~~~~----~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~ni~~ 131 (228)
T TIGR00478 62 KLKEALEEFNIDV----KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERTNIRY 131 (228)
T ss_pred HHHHHHHhcCCCC----CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecCCccc
Confidence 3455555554422 478999999999999999998733589999999988876211 11 232 234444443
Q ss_pred CC-----CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC
Q 017428 220 QP-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (371)
Q Consensus 220 ~~-----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (371)
.. ..-..+|+++++..+ ++..+.+.|+| |.+++.- .+.+.-.. . ......-..
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~L~--KPqFE~~~--------~---~~~~~giv~ 189 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTLLF--KPQFEAGR--------E---KKNKKGVVR 189 (228)
T ss_pred CCHhHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEEEc--ChHhhhcH--------h---hcCcCCeec
Confidence 21 111356766655432 47889999999 7766543 11110000 0 000000000
Q ss_pred ----CCCCHHHHHHHHHhCCCceEEEEecC
Q 017428 295 ----AWCSTADYVKLLQSLSLEDIKAEDWS 320 (371)
Q Consensus 295 ----~~~~~~~~~~ll~~aGF~~v~~~~~~ 320 (371)
.....+++...+.+.||....+....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 190 DKEAIALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred CHHHHHHHHHHHHHHHHcCCCeEeeEEECC
Confidence 01134567778888999988776443
No 196
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.65 E-value=1.9e-07 Score=81.93 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++...++++ +..|||+|.|||.++..+.+. +++|+++++++.|+...+++++........+++++|+...
T Consensus 46 v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 46 VIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 6778888888876 899999999999999999998 8999999999999999999997665558899999999887
Q ss_pred CCCCCccceEEcc
Q 017428 221 PFPDGQFDLVWSM 233 (371)
Q Consensus 221 ~~~~~~fD~v~~~ 233 (371)
++ -.||.++++
T Consensus 120 d~--P~fd~cVsN 130 (315)
T KOG0820|consen 120 DL--PRFDGCVSN 130 (315)
T ss_pred CC--cccceeecc
Confidence 64 368988874
No 197
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.65 E-value=1.6e-07 Score=83.55 Aligned_cols=145 Identities=20% Similarity=0.265 Sum_probs=87.2
Q ss_pred CEEEEECCC--cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC----CCccc-
Q 017428 160 KNVVDVGCG--IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP----DGQFD- 228 (371)
Q Consensus 160 ~~VLDlG~G--tG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD- 228 (371)
...|||||| |-.....+++.. .++|+.+|.+|..+..++..+....- ....++++|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 459999999 344566677666 78999999999999999998865431 23889999998842 11 12233
Q ss_pred ----eEEccccccCcC---CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCC-CCCCHH
Q 017428 229 ----LVWSMESGEHMP---DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-AWCSTA 300 (371)
Q Consensus 229 ----~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 300 (371)
.|++..++||++ ++..+++.++..|.||.+|.|+..+.+... .....+.........+ .+.+.+
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--------~~~~~~~~~~~~~~~~~~~Rs~~ 220 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--------ERAEALEAVYAQAGSPGRPRSRE 220 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--------HHHHHHHHHHHHCCS----B-HH
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--------HHHHHHHHHHHcCCCCceecCHH
Confidence 577788999995 478999999999999999999987654321 1111122222222222 246899
Q ss_pred HHHHHHHhCCCceEE
Q 017428 301 DYVKLLQSLSLEDIK 315 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~ 315 (371)
++..+|. ||+.++
T Consensus 221 ei~~~f~--g~elve 233 (267)
T PF04672_consen 221 EIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHCCT--TSEE-T
T ss_pred HHHHHcC--CCccCC
Confidence 9999997 888664
No 198
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.64 E-value=5.4e-07 Score=87.68 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEc--
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWS-- 232 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~-- 232 (371)
++.+|||+++|.|.-+..+++.+ ...|+++|+++.-+...++++++.|+ .|+.+...|...+. ...+.||.|++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58999999999999999999987 35899999999999999999999998 47888899987653 22467999994
Q ss_pred --cc--cccCcCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 --ME--SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 --~~--~l~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+. ++..-++. .++|.++.+.|||||.|+.++.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 21 22211111 47899999999999999887754
No 199
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.64 E-value=1.1e-07 Score=86.23 Aligned_cols=105 Identities=25% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C--CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~--~~~~~fD~v~~~ 233 (371)
+.+|||+-|=||.++...+.. |+ +|+.||.|...+++++++++-+++. .+++|+..|+.+. . -..++||+||+-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 789999999999999987765 54 7999999999999999999999986 6899999998763 1 124689999973
Q ss_pred c------cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 E------SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~------~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
- ...-..+...++..+.++|+|||.|+++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 111113457889999999999999988763
No 200
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.59 E-value=4.9e-08 Score=86.45 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
+..++|+|||.|.....- ..+.++|.|++...+..+++. +.......|+.++|+++.+||.+++..++||
T Consensus 46 gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred cceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 788999999999653221 246799999999998887652 1226788999999999999999999999999
Q ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 239 ~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
+.. ...+++++.|+|+|||..++..|....
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 954 378999999999999999998876543
No 201
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.58 E-value=1.8e-06 Score=79.88 Aligned_cols=117 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (371)
..+....+...++ ++..|+|+|||.|.-+..|.+.+ ...++++|+|..+++.+.+++..... +.+.+
T Consensus 63 L~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v 134 (319)
T TIGR03439 63 LKKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRC 134 (319)
T ss_pred HHHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEE
Confidence 3444555555543 36789999999999887777655 36799999999999999999874444 34555
Q ss_pred --EEcCCCCC----CC--CCCccceEEcc-ccccCcCCH--HHHHHHHHH-hcCCCcEEEEE
Q 017428 213 --QVGDALQQ----PF--PDGQFDLVWSM-ESGEHMPDK--SKFVSELAR-VTAPAGTIIIV 262 (371)
Q Consensus 213 --~~~d~~~~----~~--~~~~fD~v~~~-~~l~~~~~~--~~~l~~~~~-~LkpgG~l~i~ 262 (371)
+.+|+.+. +- ......+|+.. .++.+++.. ..+++++++ .|+|||.++|.
T Consensus 135 ~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 135 AGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred EEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 78887653 11 12335666655 488888544 578999999 99999999885
No 202
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.56 E-value=2.4e-06 Score=81.09 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (371)
.....+++.+...+... +.+|||++||+|.+++.+++. ..+|+|+|.++.+++.|+++++.+++ .+++|+.+
T Consensus 190 ~~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~ 261 (362)
T PRK05031 190 AVNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRM 261 (362)
T ss_pred HHHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEC
Confidence 34445555555554321 357999999999999998887 46899999999999999999999888 48999999
Q ss_pred CCCCC-C-CC--------------CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 216 DALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 216 d~~~~-~-~~--------------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.+. + +. ...||+|+..=--. .-...+++.+.+ |++.+++..
T Consensus 262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~--G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA--GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC--CCcHHHHHHHHc---cCCEEEEEe
Confidence 98663 1 10 12589998743211 112344444443 677766653
No 203
>PRK04148 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=70.19 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||||||+|. ++..|++. |..|+++|+++..++.+++. .+.++.+|+.+..+. -+.+|+|++...-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence 6899999999996 88888865 89999999999998888764 378899999886532 3668999876422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
++....+.++.+. -|.-++|...+.+.
T Consensus 88 ---~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 88 ---RDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred ---HHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 3444455555543 35667777655443
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.54 E-value=1.5e-06 Score=75.40 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=103.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCc-cceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ-FDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~l 236 (371)
+.+++|||+|.|..++.++=.+ +.+|+-+|....-+...+......++ +|++++.+.+++..-. .. ||+|+++.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~-~~~~D~vtsRA-- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQE-KKQYDVVTSRA-- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccc-cccCcEEEeeh--
Confidence 5899999999999999988544 67799999999999999999999998 5899999999987521 23 99999984
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
+.+...++.-+..++|+||.+++.-+. .. ---..+.+......||.++.+
T Consensus 144 --va~L~~l~e~~~pllk~~g~~~~~k~~----------------~~------------~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 144 --VASLNVLLELCLPLLKVGGGFLAYKGL----------------AG------------KDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred --ccchHHHHHHHHHhcccCCcchhhhHH----------------hh------------hhhHHHHHHHHHhhcCcEEEE
Confidence 456677888899999999987753210 00 012445667788889998888
Q ss_pred EecCCccc
Q 017428 317 EDWSQNVA 324 (371)
Q Consensus 317 ~~~~~~~~ 324 (371)
.....+..
T Consensus 194 ~~~~~p~~ 201 (215)
T COG0357 194 FSLTVPEL 201 (215)
T ss_pred EEeecCCC
Confidence 87777654
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.52 E-value=1.1e-06 Score=83.09 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
...+++.+++.+... +.+|||++||+|.+++.+++.. .+|+|+|+++.+++.|+++++.+++ .+++|+.+|+
T Consensus 183 ~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~ 254 (353)
T TIGR02143 183 NIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSA 254 (353)
T ss_pred HHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCH
Confidence 344555555554321 3479999999999999998874 6899999999999999999999888 4799999998
Q ss_pred CCCC--------C---C-----CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 218 LQQP--------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 218 ~~~~--------~---~-----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.+.. + . ...||+|+..=- . -.-...+++.+. +|++.+++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 255 EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred HHHHHHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEc
Confidence 7631 0 0 013798887422 0 111234444443 4777777753
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.51 E-value=1.8e-06 Score=78.67 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+.+|||+|||+|..+..+.+.+ -.+++++|.|+.|++.++..+..........+. .+......+-...|+|++.++|
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehhh
Confidence 6899999999998776666654 357999999999999999877654211111111 1111111112334999999999
Q ss_pred cCcCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+++ ...+++.+.+.+.+ .|+++|..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 99976 35677777776665 88888854
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.2e-06 Score=78.01 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.+++.+.+.+ +..|||||+|.|.++..|+++ +..|+++++++.+++..++... ..+|++++.+|+...
T Consensus 18 v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 18 VIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 5778888877664 899999999999999999998 7789999999999999988865 236899999999998
Q ss_pred CCCCC-ccceEEccccccCcC
Q 017428 221 PFPDG-QFDLVWSMESGEHMP 240 (371)
Q Consensus 221 ~~~~~-~fD~v~~~~~l~~~~ 240 (371)
+++.- .++.|+++.- +++.
T Consensus 89 d~~~l~~~~~vVaNlP-Y~Is 108 (259)
T COG0030 89 DFPSLAQPYKVVANLP-YNIS 108 (259)
T ss_pred cchhhcCCCEEEEcCC-Cccc
Confidence 87642 5778876543 3443
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.47 E-value=1.5e-06 Score=78.92 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQP-FPDGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~v~~~ 233 (371)
+.+||-||.|.|.++..+++.. -.+++.||+++..++.+++.+.... . +++++++..|..+.- -..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 4789999999999999999876542 2 378999999987642 122489999975
Q ss_pred ccccCcC----CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..=.--+ .-..+++.+++.|+++|+++...
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4332101 12789999999999999999973
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.46 E-value=5.3e-07 Score=82.31 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
+++++++.+...+ +..+||.+||.|..+..+++.++ .+|+|+|.++.+++.|++++.. .+++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 5677777776554 78999999999999999999873 7999999999999999998755 368999999998
Q ss_pred CCC--CCC--CccceEEcccccc--CcCCHHHH
Q 017428 219 QQP--FPD--GQFDLVWSMESGE--HMPDKSKF 245 (371)
Q Consensus 219 ~~~--~~~--~~fD~v~~~~~l~--~~~~~~~~ 245 (371)
++. .+. .++|.|++...+. ++.+..+-
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCccccccCCCcCC
Confidence 753 222 2799999876543 34454443
No 210
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.44 E-value=7.2e-07 Score=76.15 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C---CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P---FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~~~~fD~v~~~~ 234 (371)
+.+|||+-||+|.++++.+.+....|+.||.++..+...+++++..+..+++.++..|+... . ....+||+|++.-
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999988844689999999999999999999998877799999996542 1 2468899998763
Q ss_pred cccCcCC-HHHHHHHHH--HhcCCCcEEEEEec
Q 017428 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--~~LkpgG~l~i~~~ 264 (371)
-.. ... ...++..+. .+|+++|.+++-..
T Consensus 123 PY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 PYA-KGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Ccc-cchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 332 233 367777776 78999998888653
No 211
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.41 E-value=5.5e-06 Score=68.32 Aligned_cols=104 Identities=38% Similarity=0.539 Sum_probs=75.7
Q ss_pred EEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CccceEEccccc
Q 017428 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~v~~~~~l 236 (371)
++|+|||+|... .+..... ..++|+|+++.++..++......+. ..+.+...|... .++.. ..||++ .....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333322 4899999999999985554432111 116788888776 67666 489999 55544
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 268 (371)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44444888999999999999999998865443
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.40 E-value=1.4e-06 Score=78.15 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCC-ccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~-~~~~~-~fD~v~~ 232 (371)
+.+||=||.|.|..+..+.+.. ..+|+.||+++..++.|++.+..... .++++++..|.... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 7899999999999999998764 46899999999999999998765322 36899999998653 11224 8999987
Q ss_pred cccccCcCC----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-..-...+. -..+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 433211111 2689999999999999999865
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.40 E-value=1.8e-07 Score=78.68 Aligned_cols=145 Identities=20% Similarity=0.254 Sum_probs=92.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
..+.++||+|+|.|..+..++..+ .+|++.++|..|....+++ +. || +-..+..+ .+-+||+|.|.+.+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~y--nV-l~~~ew~~---t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----NY--NV-LTEIEWLQ---TDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----CC--ce-eeehhhhh---cCceeehHHHHHHH
Confidence 346899999999999999999876 3699999999998876652 21 22 11222222 24569999999998
Q ss_pred cCcCCHHHHHHHHHHhcCC-CcEEEEEecc-CCCCCc-CccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCce
Q 017428 237 EHMPDKSKFVSELARVTAP-AGTIIIVTWC-HRDLAP-SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkp-gG~l~i~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~ 313 (371)
.---++-.+++.++.+|+| +|++++.-.- ...+.. ...........++...+..+. -....+.++|+++||.+
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~e----e~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFE----EEVARFMELLRNCGYRV 255 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHH----HHHHHHHHHHHhcCchh
Confidence 7777889999999999999 8998885421 111111 001111111122222111110 12345778999999987
Q ss_pred EEE
Q 017428 314 IKA 316 (371)
Q Consensus 314 v~~ 316 (371)
...
T Consensus 256 eaw 258 (288)
T KOG3987|consen 256 EAW 258 (288)
T ss_pred hhh
Confidence 543
No 214
>PRK00536 speE spermidine synthase; Provisional
Probab=98.40 E-value=3.9e-06 Score=75.32 Aligned_cols=96 Identities=14% Similarity=0.052 Sum_probs=74.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
+.+||=||.|.|..+.++++. ..+|+.||+++.+++.+++.+... --.++++++.. +.+ ...++||+|++-..
T Consensus 73 pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~ 148 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE 148 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC
Confidence 799999999999999999986 569999999999999999954432 12357777652 221 12378999997642
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+++.+++.|+|||.++...
T Consensus 149 -----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 -----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred -----CChHHHHHHHHhcCCCcEEEECC
Confidence 33678899999999999999864
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.40 E-value=2.4e-06 Score=79.15 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
++.+|||.=+|-|.+++.+|......|+++|++|..++..+++++.+++.+.+..+++|.......-+.||.|++...
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p-- 265 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP-- 265 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC--
Confidence 389999999999999999999743349999999999999999999999987799999999887644488999998743
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.+...++..+.+.+++||.+-+.++...
T Consensus 266 --~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 266 --KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred --CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 3446788889999999999999886544
No 216
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=3.6e-07 Score=72.50 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=65.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+++++|+|||.|.+....+---...|+|+|++++.++.+++++....+ ++.+.++|+.++.+..+.||.++.+--+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 3789999999999998554432156799999999999999999988775 67899999999877779999999887665
Q ss_pred C
Q 017428 238 H 238 (371)
Q Consensus 238 ~ 238 (371)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 4
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.38 E-value=1.7e-06 Score=75.03 Aligned_cols=116 Identities=25% Similarity=0.304 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHH-------HcCC-CCCe
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAA-------ARGL-ADKV 210 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~-------~~~~-~~~v 210 (371)
..+..+++.+.+.+ +...+|||||.|......+-..+++ .+||++.+...+.|+...+ ..|. ...+
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 35666777777665 8899999999999988888766654 9999999998887765432 2232 3468
Q ss_pred EEEEcCCCCCCCC---CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 211 SFQVGDALQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 211 ~~~~~d~~~~~~~---~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
.+..+|+.+.++. -...|+|++++.+.. ++....+.+....||+|-+++-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEE
Confidence 8889998775321 134699999876532 3455666778888999877764
No 218
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=9e-06 Score=78.39 Aligned_cols=119 Identities=25% Similarity=0.353 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
......++...++++...+ +.+|||+=||.|.+++.++++ ..+|+|+|+++++++.|+++++.+++. |+.|..
T Consensus 275 ~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~ 347 (432)
T COG2265 275 PAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEe
Confidence 3455667777777776544 789999999999999999976 679999999999999999999999995 599999
Q ss_pred cCCCCCCC---CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 215 GDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 215 ~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+++++... ....+|.|+..--=... ...+++.+.+ ++|-.+++++-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~--~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGA--DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCC--CHHHHHHHHh-cCCCcEEEEeC
Confidence 99988632 23578999863110000 1245555554 67878888753
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.33 E-value=8.1e-06 Score=70.83 Aligned_cols=124 Identities=20% Similarity=0.238 Sum_probs=89.4
Q ss_pred EEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC
Q 017428 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 240 (371)
|.||||--|.+.+.|.+.. -..++++|+++.-++.|++.++..++.+++++..+|..+.--+.+..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 6899999999999999985 2479999999999999999999999999999999996552112233798887655432
Q ss_pred CHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 241 DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 241 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
-...++.+....++....+++.- ......++++|.+.||.+++..-.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILqP--------------------------------~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQP--------------------------------NTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEEE--------------------------------SS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEeC--------------------------------CCChHHHHHHHHHCCCEEEEeEEE
Confidence 34667777777777666777753 124677899999999998886544
No 220
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.32 E-value=8.3e-07 Score=73.59 Aligned_cols=72 Identities=28% Similarity=0.503 Sum_probs=55.8
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCc-cceEEcc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWSM 233 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~v~~~ 233 (371)
.|+|+.||.|+.++.+|+. ..+|++||+++..++.|+.+++..|+.++|.++.+|+.+.. +.... ||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999997 56899999999999999999999999899999999987752 22222 8999874
No 221
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.32 E-value=1.2e-05 Score=72.49 Aligned_cols=104 Identities=27% Similarity=0.422 Sum_probs=67.4
Q ss_pred CCEEEEECCCcCh-HHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
+.+|+=||||.=- .++.+++.+ ++.|+++|+++...+.+++.++ ..++..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 5699999999754 455666655 5789999999999999999887 55677889999999877654446899998776
Q ss_pred ccc-CcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 235 SGE-HMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 235 ~l~-~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
... .-.+..+++.++.+.++||..+++-
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 554 2247899999999999999988885
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=5.1e-06 Score=71.11 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
.+.++.++..+- .++..|+|||+-.|.|+..+++..+ ..|+|+|+.|.- ..++|.++++|++
T Consensus 32 KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~ 95 (205)
T COG0293 32 KLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDIT 95 (205)
T ss_pred HHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeecc
Confidence 344455544332 2589999999999999999999874 349999998842 2357999999998
Q ss_pred CCC--------CCCCccceEEccccc--------cCcCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 219 QQP--------FPDGQFDLVWSMESG--------EHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 219 ~~~--------~~~~~fD~v~~~~~l--------~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
..+ +....+|+|++-..- .|... ...++.-+..+|+|||.+++-.+-
T Consensus 96 ~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 96 DEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred CccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 864 344557999864322 12111 145677778899999999997753
No 223
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=1.1e-05 Score=83.06 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------------------------------
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-------------------------------------- 180 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-------------------------------------- 180 (371)
..+...++....... ++..++|..||+|.+.++.+...
T Consensus 175 etlAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 175 ENLAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred HHHHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 345566666665521 36899999999999998876521
Q ss_pred -----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEccccccC-cC---CHHHHHHHH
Q 017428 181 -----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGEH-MP---DKSKFVSEL 249 (371)
Q Consensus 181 -----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~l~~-~~---~~~~~l~~~ 249 (371)
..+++|+|+++.+++.|++++...|+.+.+.+.++|+.+++.+ .++||+|+++--... +. +...++..+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~l 330 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQL 330 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHH
Confidence 1269999999999999999999999988899999999887543 357999999844322 11 223444444
Q ss_pred HHhc---CCCcEEEEEe
Q 017428 250 ARVT---APAGTIIIVT 263 (371)
Q Consensus 250 ~~~L---kpgG~l~i~~ 263 (371)
.+.| .+|+.+++..
T Consensus 331 g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 331 GRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHhCCCCeEEEEe
Confidence 4444 4888887765
No 224
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.24 E-value=1.9e-05 Score=66.63 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=82.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCC-CCccceEEccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFP-DGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~fD~v~~~~ 234 (371)
.+.++||+=+|+|.++.+.+.+....++.||.+.......+++++..+...++.++..|+... ... .++||+|++--
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 489999999999999999999865789999999999999999999988778999999998743 112 23599999865
Q ss_pred ccc-CcCCHHHHHHH--HHHhcCCCcEEEEEe
Q 017428 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~~~LkpgG~l~i~~ 263 (371)
-++ .+-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 444 11222333333 457899999999865
No 225
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.21 E-value=1.4e-05 Score=75.68 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
+.+|||+.||+|..++.++.+. + ..|+++|+++..++.++++++.+++. ++.+...|+...- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 3689999999999999999874 3 58999999999999999999988773 7889999987652 1236799998753
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+ ..+..++..+.+.+++||.|+++-
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 2 345678999999999999999974
No 226
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=2.8e-05 Score=73.54 Aligned_cols=109 Identities=22% Similarity=0.321 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC-CCccceE
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLV 230 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~fD~v 230 (371)
.++.+|||+.++.|+=+..+++.. +..|+++|.++.-+...++++++.|+. |+.....|....+ .+ .+.||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEE
Confidence 358999999999999999999876 345799999999999999999999985 5888888876543 22 2359999
Q ss_pred Ecc------ccccCcCC----------------HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 231 WSM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 231 ~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++- +++.--++ ..++|..+.++|||||.|+.++.+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 862 22211121 1378999999999999999988643
No 227
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=8.8e-05 Score=66.71 Aligned_cols=175 Identities=16% Similarity=0.134 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-------
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA------- 207 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------- 207 (371)
......+++++-...+... ....+.+||--|||.|.++..++.. |..+-|-++|--|+-...=.+..-..+
T Consensus 128 d~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 3444556666655554322 2234678999999999999999987 667777788777764332222110000
Q ss_pred --------------------------------CCeEEEEcCCCCC-C--CCCCccceEEccccccCcCCHHHHHHHHHHh
Q 017428 208 --------------------------------DKVSFQVGDALQQ-P--FPDGQFDLVWSMESGEHMPDKSKFVSELARV 252 (371)
Q Consensus 208 --------------------------------~~v~~~~~d~~~~-~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~ 252 (371)
.+.+...+|+.+. + -..+.||+|+.++.+-...+.-..++.+..+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~i 285 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKI 285 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHh
Confidence 0111222343331 1 1124699999998887778889999999999
Q ss_pred cCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEecCCcccC
Q 017428 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAP 325 (371)
Q Consensus 253 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~ 325 (371)
|||||+.+-..+-.-.+.+....- ....+ =++.+++..+++..||+++..+........
T Consensus 286 Lk~GGvWiNlGPLlYHF~d~~g~~------------~~~si--Els~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369)
T KOG2798|consen 286 LKPGGVWINLGPLLYHFEDTHGVE------------NEMSI--ELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369)
T ss_pred ccCCcEEEeccceeeeccCCCCCc------------ccccc--cccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence 999999876542111111100000 00011 157899999999999999988765555444
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.20 E-value=2.3e-05 Score=64.14 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=72.0
Q ss_pred CCCEEEEECCCcChHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCccceE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~v 230 (371)
+..+|+|+|||.|.++..++. ..+.+|++||.++..++.++++.+..+ +..++.+..++..+.. .....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeEE
Confidence 478999999999999999998 447899999999999999999988876 4456777777665543 24567788
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
+..++...+.+ .+++.+.+ |+-..++
T Consensus 104 vgLHaCG~Ls~--~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 104 VGLHACGDLSD--RALRLFIR---PNARFLV 129 (141)
T ss_pred EEeecccchHH--HHHHHHHH---cCCCEEE
Confidence 77766654433 44554444 5554443
No 229
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.20 E-value=1.1e-06 Score=75.23 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=70.8
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 017428 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (371)
Q Consensus 141 ~~~~~l~~~~-~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (371)
.+.++.+... +++ .++.+|||+||++|+|+..+.++. ...|+|+|+.+.. ...++.++.+|+
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------------~~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------------PLQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------------S-TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------------cccceeeeeccc
Confidence 4455666555 322 235899999999999999999985 4799999998751 124677778776
Q ss_pred CCCC--------CC--CCccceEEccccccCcCC-----------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 218 LQQP--------FP--DGQFDLVWSMESGEHMPD-----------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 218 ~~~~--------~~--~~~fD~v~~~~~l~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.+.. +. .+.||+|++-.+...-.+ ....+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 5531 11 268999998763332221 134555666789999999887654
No 230
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.20 E-value=3.8e-06 Score=71.56 Aligned_cols=97 Identities=25% Similarity=0.339 Sum_probs=72.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~~~~ 234 (371)
...|+|.-||.|+.++..+.+ +..|++||++|.-+..|+.+++-.|++++|.|+++|+.++ .+....+|+|+.+-
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 467999999999999999887 7899999999999999999999999999999999998875 23334466777654
Q ss_pred cccCcCCHHHHHHHHHHhcCCC
Q 017428 235 SGEHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~Lkpg 256 (371)
.-..-.-...-+-.+...++|.
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchh
Confidence 3332211222233444444444
No 231
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.20 E-value=9e-06 Score=75.79 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCEEEEECCCcChHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCC--CCc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFP--DGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~ 226 (371)
++.+|+|.+||+|.+...+.+. ....++|+|+++.++..|+.++.-.+.... ..+...|....+.. ...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3778999999999999888763 257899999999999999887765554332 45788887655422 478
Q ss_pred cceEEccccccCc--C------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHM--P------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~--~------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
||+|+++--+... . + ...++..+.+.|++||++.++..
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 9999986332211 0 1 12588999999999999877763
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=6.7e-06 Score=68.94 Aligned_cols=103 Identities=20% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
.+++|||+|+|+|..++..++.....|+..|+.|.....++-+.+.+++ ++.+...|... .+..||+|+...+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeeceec
Confidence 4899999999999999998887446799999999999999988888885 68888888765 357799999999988
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.-+.-.+++.-..++...|-.+++.+..
T Consensus 154 ~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 154 NHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 7666677887444444444455555543
No 233
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.19 E-value=8.8e-06 Score=76.95 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
......+++.+++.+...+ + +|||+-||.|.++..+++. ..+|+|||+++.+++.|+++++.+++ .|++|+.
T Consensus 179 ~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~ 250 (352)
T PF05958_consen 179 PEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIR 250 (352)
T ss_dssp HHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEE
Confidence 4455677788888877543 4 8999999999999999997 57999999999999999999999998 5899998
Q ss_pred cCCCCC
Q 017428 215 GDALQQ 220 (371)
Q Consensus 215 ~d~~~~ 220 (371)
+++++.
T Consensus 251 ~~~~~~ 256 (352)
T PF05958_consen 251 GDAEDF 256 (352)
T ss_dssp --SHHC
T ss_pred eeccch
Confidence 877543
No 234
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.5e-06 Score=70.29 Aligned_cols=136 Identities=9% Similarity=0.114 Sum_probs=95.6
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+.+|||+|.|- |..++.+|... ...|...|-+++.++..++....+... ..+.....+.... ......||.|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 68899999995 44444555444 578999999999999988876554211 1222222222111 123568999999
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~ 312 (371)
..++..-+....+++.+..+|+|.|..++..+- +..+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-----------------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-----------------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEecCc-----------------------------ccchHHHHHHHHHhceeE
Confidence 998876556688999999999999997775421 133677888899999999
Q ss_pred eEEEEecCCcc
Q 017428 313 DIKAEDWSQNV 323 (371)
Q Consensus 313 ~v~~~~~~~~~ 323 (371)
+.-.+.++..+
T Consensus 161 v~l~enyde~i 171 (201)
T KOG3201|consen 161 VCLEENYDEAI 171 (201)
T ss_pred EEecccHhHHH
Confidence 88877777665
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.06 E-value=3.3e-05 Score=65.70 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (371)
..+...++....+.+.. ++.+||+||-|-|.....+.+.-...-+.|+..|..+...+...-. -..||.+..
T Consensus 84 m~WEtpiMha~A~ai~t------kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~ 155 (271)
T KOG1709|consen 84 MRWETPIMHALAEAIST------KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILE 155 (271)
T ss_pred hhhhhHHHHHHHHHHhh------CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEe
Confidence 34444555555554442 3899999999999999888886555677889999888766653211 125777777
Q ss_pred cCCCCC--CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 215 GDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 215 ~d~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.++. .++++.||-|+.-..-++.+|...+.+.+.++|||+|.+-...
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 766653 3678999999876555777888899999999999999988765
No 236
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.06 E-value=8.1e-05 Score=69.59 Aligned_cols=121 Identities=23% Similarity=0.244 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---------------------------------C--
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A-- 182 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~---------------------------------~-- 182 (371)
...+...++.+.+-.+ +..++|-=||+|.++++.|-... +
T Consensus 176 ketLAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 176 KETLAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred hHHHHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 3446666777666654 67899999999999998876531 1
Q ss_pred -----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc-CcCC---H----HHHHHHH
Q 017428 183 -----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HMPD---K----SKFVSEL 249 (371)
Q Consensus 183 -----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~~---~----~~~l~~~ 249 (371)
.++|+|+++.+++.|+.++...|+.+-|+|.++|+.++.-+-+.+|+||++--.. -+.+ . ..+.+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~l 330 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTL 330 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999998863337899999974332 1222 2 2334455
Q ss_pred HHhcCCCcEEEEEe
Q 017428 250 ARVTAPAGTIIIVT 263 (371)
Q Consensus 250 ~~~LkpgG~l~i~~ 263 (371)
.+.++--+..+++.
T Consensus 331 k~~~~~ws~~v~tt 344 (381)
T COG0116 331 KRLLAGWSRYVFTT 344 (381)
T ss_pred HHHhcCCceEEEEc
Confidence 56666656666654
No 237
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=3.8e-05 Score=69.74 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.+++.+++.+.+.+ +..|||+|+|+|.++..+++. +.+|+++|+++.+.+..++++. ..++++++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 36677777776654 899999999999999999998 5899999999999999888765 23689999999998
Q ss_pred CCCCC---CccceEEccccccCcCCHHHHHHHHHHhcCC
Q 017428 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (371)
Q Consensus 220 ~~~~~---~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkp 255 (371)
...+. +....|+++.-. ++. ..++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlPy-~is--~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLPY-NIS--SPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEETG-TGH--HHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEecc-cch--HHHHHHHhhcccc
Confidence 86543 344566665433 332 3566666654344
No 238
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.00 E-value=3e-05 Score=71.41 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.++.++|||||++|+|+..+.++ +..|++||..+-... +. -.++|.....|......+.+.+|.|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~-----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQS-----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHh-----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999997 889999996652211 11 136899999887665322678999987643
Q ss_pred cCcCCHHHHHHHHHHhcCCC
Q 017428 237 EHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkpg 256 (371)
..+.++.+-+.++|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 46778888889998776
No 239
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.99 E-value=2.8e-05 Score=64.67 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=79.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc--c
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~--l 236 (371)
...+.|+|+|+|.++...+.. ..+|++++.+|.-.+.|.+++.-.|. .|++++.+|+.+..| +..|+|+|-.. .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999888776 56899999999999999998766665 689999999999887 55798886321 1
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
--.+....++..+...||-++.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 111344677888888999888877543
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.97 E-value=0.00011 Score=63.43 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccc
Q 017428 154 DPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFD 228 (371)
Q Consensus 154 ~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD 228 (371)
.+..++.+||-+|+.+|.....+++-. ...|++|+.|+......-..+++. +|+--+..|+.... .--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 334569999999999999999999876 468999999996554443333332 58999999998742 1135899
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc--CCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC--HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (371)
+|++.-. +-....-++.++...||+||.+++.--. -+...+ ... ...+-.+.|
T Consensus 146 vI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~--------p~~---------------vf~~e~~~L 200 (229)
T PF01269_consen 146 VIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTAD--------PEE---------------VFAEEVKKL 200 (229)
T ss_dssp EEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS--------HHH---------------HHHHHHHHH
T ss_pred EEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCC--------HHH---------------HHHHHHHHH
Confidence 9987533 2123456788898999999999987521 111000 001 123345678
Q ss_pred HhCCCceEEEEec
Q 017428 307 QSLSLEDIKAEDW 319 (371)
Q Consensus 307 ~~aGF~~v~~~~~ 319 (371)
++.||+.++....
T Consensus 201 ~~~~~~~~e~i~L 213 (229)
T PF01269_consen 201 KEEGFKPLEQITL 213 (229)
T ss_dssp HCTTCEEEEEEE-
T ss_pred HHcCCChheEecc
Confidence 8899998887654
No 241
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.93 E-value=2.1e-06 Score=66.55 Aligned_cols=99 Identities=24% Similarity=0.383 Sum_probs=45.1
Q ss_pred EEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEccccc
Q 017428 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (371)
Q Consensus 163 LDlG~GtG~~~~~l~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l 236 (371)
||+|+..|..+..+++.. . .+++++|..+. .+.+++.+++.++..+++++.++..+. .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 699999999998888765 2 37999999995 334444555466667899999998653 23357899998754 2
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|..+.....+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 223445677889999999999998854
No 242
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.90 E-value=8.9e-05 Score=62.15 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=91.8
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHH----------HHHHHHHHHHHcCCCCCeE
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV----------QAQRANALAAARGLADKVS 211 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~--~~v~gvD~s~~----------~~~~a~~~~~~~~~~~~v~ 211 (371)
++|...++++ +.+|+|+=.|.|.|+..++...+ ..|+++-..+. +-..+++. ...|++
T Consensus 39 E~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~-----~~aN~e 108 (238)
T COG4798 39 EVLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP-----VYANVE 108 (238)
T ss_pred ceeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh-----hhhhhh
Confidence 4455566665 99999999999999999988763 35666543322 11112111 123555
Q ss_pred EEEcCCCCCCCCCCccceEEccccccCc-------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHH
Q 017428 212 FQVGDALQQPFPDGQFDLVWSMESGEHM-------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (371)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
.+-.+...++ +.+..|+++.....|-+ .....+...+++.|||||.+++.+........... ..
T Consensus 109 ~~~~~~~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------t~-- 179 (238)
T COG4798 109 VIGKPLVALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------TI-- 179 (238)
T ss_pred hhCCcccccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------hh--
Confidence 5555555544 34556666653332222 23478899999999999999999864332211100 00
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
.. ...+...+....+.+||........
T Consensus 180 ----~~----~ri~~a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 180 ----TL----HRIDPAVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred ----hh----cccChHHHHHHHHhhcceeeeeehh
Confidence 00 2457889999999999997765443
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.88 E-value=0.00021 Score=65.57 Aligned_cols=105 Identities=23% Similarity=0.222 Sum_probs=77.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--HHHc---C-CCCCeEEEEcCCCCC-CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--AAAR---G-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~---~-~~~~v~~~~~d~~~~-~~~~~~fD~v 230 (371)
..+||-+|.|.|..+.++.+.- -.+|+-+|++|.|++.++.. .... . -+++++++..|+.+. .-..+.||+|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 6789999999999999998854 36899999999999999843 2211 1 246899999998775 2234689999
Q ss_pred EccccccCcCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|...-=-.-+. -..+..-+.+.|+++|.+++..
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 87432111111 1467888899999999999875
No 244
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=0.00014 Score=69.67 Aligned_cols=103 Identities=27% Similarity=0.294 Sum_probs=85.1
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 239 (371)
.++|-+|||.-.+...+-+.....|+-+|+|+..++....+... . .+-..+...|+..+.|++++||+|+.-..+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 38999999999888888775446799999999998887776542 2 256899999999999999999999999988887
Q ss_pred C-C---------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 240 P-D---------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 240 ~-~---------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
- + ....+.++.|+|+|||+.+.+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 2 13567899999999999888776
No 245
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.82 E-value=0.00017 Score=72.27 Aligned_cols=75 Identities=20% Similarity=0.134 Sum_probs=54.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 224 (371)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999998887551 4789999999999999998876541 23445555533221 112
Q ss_pred CccceEEccc
Q 017428 225 GQFDLVWSME 234 (371)
Q Consensus 225 ~~fD~v~~~~ 234 (371)
+.||+|+++=
T Consensus 111 ~~fD~IIgNP 120 (524)
T TIGR02987 111 DLFDIVITNP 120 (524)
T ss_pred CcccEEEeCC
Confidence 5799999863
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.82 E-value=0.0014 Score=62.02 Aligned_cols=162 Identities=17% Similarity=0.225 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHH---------cC---CCCCe
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAA---------RG---LADKV 210 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----------------~~~v~gvD~s~~~~~~a~~~~~~---------~~---~~~~v 210 (371)
..+|+|+|||+|..+..+.... ..+|..-|+...-....=+.+.. .. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 6789999999998775553211 13566667653322222111110 00 00011
Q ss_pred EEE---EcCCCCCCCCCCccceEEccccccCcCCH--------------------------------------HHHHHHH
Q 017428 211 SFQ---VGDALQQPFPDGQFDLVWSMESGEHMPDK--------------------------------------SKFVSEL 249 (371)
Q Consensus 211 ~~~---~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--------------------------------------~~~l~~~ 249 (371)
-|. .+.+-.--||.++.+++++.+++|++... ..+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22333334789999999999999988531 1223333
Q ss_pred HHhcCCCcEEEEEeccCCCCCcCccc--cChH---HHHHHHH----------HhhccCCCC-CCCHHHHHHHHHhCC-Cc
Q 017428 250 ARVTAPAGTIIIVTWCHRDLAPSEES--LQPW---EQELLKK----------ICDAYYLPA-WCSTADYVKLLQSLS-LE 312 (371)
Q Consensus 250 ~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~---~~~~~~~----------~~~~~~~~~-~~~~~~~~~ll~~aG-F~ 312 (371)
.+-|.|||++++.-.+.....+.... ...| ....+.. -.+.+..|. ..+.+|+++.+++.| |.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 45688999999988766432222111 1111 1111221 122334442 368999999999887 66
Q ss_pred eEEEEecC
Q 017428 313 DIKAEDWS 320 (371)
Q Consensus 313 ~v~~~~~~ 320 (371)
+.+++.+.
T Consensus 304 I~~le~~~ 311 (386)
T PLN02668 304 IDKLEVFK 311 (386)
T ss_pred eeeeEEee
Confidence 66666544
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.79 E-value=0.0001 Score=67.57 Aligned_cols=107 Identities=22% Similarity=0.309 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~ 233 (371)
++.+|||+.++.|.-+..+++.. ...|++.|+++.-+...+.++++.|+ .++.....|.... + .....||.|+.-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 48899999999999999999987 47999999999999999999999998 4788887777664 1 233469999862
Q ss_pred ------ccccCcCCH----------------HHHHHHHHHhc----CCCcEEEEEecc
Q 017428 234 ------ESGEHMPDK----------------SKFVSELARVT----APAGTIIIVTWC 265 (371)
Q Consensus 234 ------~~l~~~~~~----------------~~~l~~~~~~L----kpgG~l~i~~~~ 265 (371)
.++..-++. ..+|+++.+.+ ||||+++.++.+
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 122222221 36899999999 999999998753
No 248
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.69 E-value=0.00015 Score=59.18 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=50.4
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.|||+|||.|.++..+++.. +.+|+++|+++.+.+.++++++.++++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 38999999999999998876 458999999999999999999888774 68888877655
No 249
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.66 E-value=0.0021 Score=55.37 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=78.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.++.||||-.|.+..++.+.. ...+++.|+++.-++.|.+++.+.++.++++...+|....--+++.+|+|+..++=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999986 467999999999999999999999999999999999854323345799988765433
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 238 HMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
. -...++++-...|+-=-++++
T Consensus 97 ~--lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 97 T--LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred H--HHHHHHHHhhhhhcCcceEEE
Confidence 1 235566666666653334554
No 250
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.65 E-value=0.00075 Score=61.59 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-----CCCCCCccceEE
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-----QPFPDGQFDLVW 231 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-----~~~~~~~fD~v~ 231 (371)
..++||||||.... .+..++.++.+++|+|+++..++.|++.++.+ ++..+|+++...-.. +..+++.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 57899999998754 44455555999999999999999999999999 888899988664222 112347899999
Q ss_pred ccccccCc
Q 017428 232 SMESGEHM 239 (371)
Q Consensus 232 ~~~~l~~~ 239 (371)
|+--++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98776653
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.65 E-value=0.00034 Score=64.21 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+++++++.+...+ +..++|.-+|.|+.+..+++.+ ..+|+|+|.++.+++.++++++.. .+++.++++++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 5677777776554 7899999999999999999987 579999999999999999988764 3689999999877
Q ss_pred CC-----CCCCccceEEcccccc--CcCCHHH
Q 017428 220 QP-----FPDGQFDLVWSMESGE--HMPDKSK 244 (371)
Q Consensus 220 ~~-----~~~~~fD~v~~~~~l~--~~~~~~~ 244 (371)
+. ...+++|.|++...+. ++.+.++
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~R 112 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGVSSPQLDDPER 112 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccCCHhhcCCCCC
Confidence 52 2346799999876553 3344443
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0038 Score=52.99 Aligned_cols=115 Identities=16% Similarity=0.267 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
+.+.++. +++..+..++.+||=+|+.+|.....+++-.+ ..+++|++|+......-..+++. +|+--+..|+..
T Consensus 61 LaAaIl~--Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 61 LAAAILK--GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred HHHHHHc--CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 4444443 23333445699999999999999999998764 67999999998776555544443 578889999877
Q ss_pred CC---CCCCccceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 220 QP---FPDGQFDLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 220 ~~---~~~~~fD~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. .--+..|+|+.--+ -++. +-+..++...||+||.++++-
T Consensus 136 P~~Y~~~Ve~VDviy~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDVA---QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cHHhhhhcccccEEEEecC---CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 42 11356898876421 1333 456788999999999888765
No 253
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00012 Score=70.17 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=59.0
Q ss_pred HHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 147 ~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+++.++. +..+||+-||||.+++.+++. -.+|+||++++..++.|+.+++.+|+ .|++|+++-++++
T Consensus 377 e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 377 EWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 4666654 789999999999999999997 46899999999999999999999998 6999999976664
No 254
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.54 E-value=0.00023 Score=57.31 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=59.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCccceEEccccccCcCC------H---HHHHHHHHH
Q 017428 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPD------K---SKFVSELAR 251 (371)
Q Consensus 183 ~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~v~~~~~l~~~~~------~---~~~l~~~~~ 251 (371)
+|+|+|+-+++++.+++++++.++..+++++...=+++. .+.+++|+++.+...--=.| + ..+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 589999999999999999999998888999998876653 23358999987754321112 2 468899999
Q ss_pred hcCCCcEEEEEec
Q 017428 252 VTAPAGTIIIVTW 264 (371)
Q Consensus 252 ~LkpgG~l~i~~~ 264 (371)
+|+|||.+.++..
T Consensus 81 lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 81 LLKPGGIITIVVY 93 (140)
T ss_dssp HEEEEEEEEEEE-
T ss_pred hhccCCEEEEEEe
Confidence 9999999999874
No 255
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.50 E-value=0.00087 Score=55.97 Aligned_cols=99 Identities=17% Similarity=0.284 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC--------CCCCC
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~~~ 225 (371)
.|+.+|||+||..|.|+....++. ..-|.|||+-... .++.+.++.+ |+.+. .+|+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 468999999999999999988876 4679999985432 2345666666 77764 25678
Q ss_pred ccceEEccccccCc----CCHH-------HHHHHHHHhcCCCcEEEEEeccCC
Q 017428 226 QFDLVWSMESGEHM----PDKS-------KFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 226 ~fD~v~~~~~l~~~----~~~~-------~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
..|+|++-..-... .|-. .++.-+...++|+|.+++-.|...
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 89999875332221 2222 344445567789999999877543
No 256
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.47 E-value=0.00052 Score=58.03 Aligned_cols=105 Identities=25% Similarity=0.374 Sum_probs=70.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC------CCCeEEEEcCCCCC-C--CCCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL------ADKVSFQVGDALQQ-P--FPDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~-~--~~~~~fD 228 (371)
...+.|||||-|.+...++..+ ..-+.|.++-...-++.++++..... ..|+.+...+.... | |..++.+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 4679999999999999999998 67899999999999999998877641 23555555554432 2 2222222
Q ss_pred eEEccccccCcCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~~l~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.+...-=-|+... ..++.+..-+|++||.++...
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211111122110 256777888999999999875
No 257
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=5.9e-05 Score=60.80 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=40.9
Q ss_pred CCCCCCCCccceEEccccccCcC--CHHHHHHHHHHhcCCCcEEEEEec
Q 017428 218 LQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 218 ~~~~~~~~~fD~v~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+|.+++.|+|++-++++|+. .-..+++++++.|||||+|-++..
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 34578899999999999999995 346889999999999999999874
No 258
>PRK10742 putative methyltransferase; Provisional
Probab=97.42 E-value=0.00095 Score=59.08 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=68.5
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 017428 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (371)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~--~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~--~~~~v~~ 212 (371)
+.+++.++++. +. +|||+-+|+|..+..++.. |+.|+++|-++......++.++.. + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 44556666654 55 8999999999999999987 889999999999999998888774 2 2246888
Q ss_pred EEcCCCCC-CCCCCccceEEccccccC
Q 017428 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~v~~~~~l~~ 238 (371)
+.+|..+. .-...+||+|++-=++.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887653 112247999998766655
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.37 E-value=0.00051 Score=60.59 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=61.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+|||||.--++....... ++.|+|+|++..+++..+..+...++ +..+...|....+ +....|+.+..-++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 37899999999999988776554 67999999999999999999988875 5777788887764 45789999988777
Q ss_pred cCcCC
Q 017428 237 EHMPD 241 (371)
Q Consensus 237 ~~~~~ 241 (371)
+-+..
T Consensus 182 p~le~ 186 (251)
T PF07091_consen 182 PCLER 186 (251)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 260
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.36 E-value=0.0012 Score=61.88 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccce
Q 017428 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (371)
Q Consensus 155 ~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 229 (371)
.+.++.||||..+-.|+-+.++|... ...|++.|.+..-+...+.++...|+ .|......|...+| ++. +||.
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccce
Confidence 44679999999999999999988866 35899999999999999999999998 46777788877654 444 8999
Q ss_pred EEccccccC------------cC---C-------HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEH------------MP---D-------KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~------------~~---~-------~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+.-.-... .. + ..++|..+..++++||+|+..+.+
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 986322221 11 1 136788889999999999998754
No 261
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.32 E-value=0.0024 Score=56.68 Aligned_cols=105 Identities=23% Similarity=0.151 Sum_probs=73.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH----HHHHcCCCCCeEEEEcCCCCCC---CCCCc-cceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA----LAAARGLADKVSFQVGDALQQP---FPDGQ-FDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~----~~~~~~~~~~v~~~~~d~~~~~---~~~~~-fD~v 230 (371)
..+|||+|+|+|..++.++...++.|+-.|+.......... ......+...+.+...+..+.+ +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 57899999999988887777668899999886544332211 1111222235666666655532 11233 9999
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++..++++-.....++.-+...|..+|.+++..
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999998888999999999999999555543
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.32 E-value=0.0013 Score=56.54 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=57.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CC--CCcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FP--DGQF 227 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~--~~~f 227 (371)
+..|+|+|.-.|+.+..+|..+ .++|+|||+...... ++..+...+.++|+++++|..+.. .. ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 7899999999999888887644 479999999543321 122222345579999999987752 11 1112
Q ss_pred ce-EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DL-VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~-v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+- +++-.+-|.-.+..+.|+....++++|+++++.|.
T Consensus 111 ~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred CceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 32 23334444446777888889999999999999763
No 263
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0029 Score=55.24 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~ 219 (371)
.+...++...+.. ++..+||+|+.||+++..+.++...+|+++|..-.|+.+--+ ..+++. +...++..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh
Confidence 3445555555554 589999999999999999999744689999999988876332 123443 33445554
Q ss_pred CC---CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCC-
Q 017428 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA- 295 (371)
Q Consensus 220 ~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (371)
+. +. +..|++++--++. ....++..+..+++|+|.++...- +.+. .- ...+ ....-...
T Consensus 136 l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvK--PQFE----ag----r~~v---~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVK--PQFE----AG----REQV---GKKGVVRDP 198 (245)
T ss_pred CCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEec--chhh----hh----hhhc---CcCceecCc
Confidence 42 32 4678888876554 456789999999999998887541 1110 00 0101 11100110
Q ss_pred ---CCCHHHHHHHHHhCCCceEEEEe
Q 017428 296 ---WCSTADYVKLLQSLSLEDIKAED 318 (371)
Q Consensus 296 ---~~~~~~~~~ll~~aGF~~v~~~~ 318 (371)
-.....+.+++++.||....+..
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 12356788899999999887753
No 264
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.22 E-value=0.00025 Score=68.13 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=64.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~fD~v~~~~~l~ 237 (371)
-..|+|..+|.|+++..|.+. . |......+..-...-..+-..|+ +-. -.|.. .++.-+.+||+|++.+++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~--VWVMNVVP~~~~ntL~vIydRGL---IG~-yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P--VWVMNVVPVSGPNTLPVIYDRGL---IGV-YHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C--ceEEEecccCCCCcchhhhhccc---chh-ccchhhccCCCCcchhheehhhhhh
Confidence 467999999999999999775 3 33333333211111111112232 222 22433 2343358999999999988
Q ss_pred CcCC---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 238 HMPD---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 238 ~~~~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
...+ ...++-++-|+|+|||+++|-+
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 8754 5889999999999999999976
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0047 Score=49.60 Aligned_cols=116 Identities=19% Similarity=0.205 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
.++.++..+.-. +..+.+|+|+|.|......++..-..-+|+++++-.+.+++-+.-+.|+.....|..-|+-+.
T Consensus 60 Qv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 60 QVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 455566666544 378999999999999888887632578999999999999999988889988999999998777
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
.+.+-.+-+|+... .-++| +-.++..-|..|-.++.+-|..
T Consensus 135 dl~dy~~vviFgae--s~m~d---Le~KL~~E~p~nt~vvacRFPL 175 (199)
T KOG4058|consen 135 DLRDYRNVVIFGAE--SVMPD---LEDKLRTELPANTRVVACRFPL 175 (199)
T ss_pred cccccceEEEeehH--HHHhh---hHHHHHhhCcCCCeEEEEecCC
Confidence 65444443443332 22233 3345555677788888776543
No 266
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.07 E-value=0.01 Score=55.75 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=82.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----------C------CEEEEEeCCHHHHHHHHHHHHHc----CCCCCe--EEEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQRANALAAAR----GLADKV--SFQV 214 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-----------~------~~v~gvD~s~~~~~~a~~~~~~~----~~~~~v--~~~~ 214 (371)
...+|+|+||..|..++.+.... + .+|+--|+-..-....=+.+... .-.+++ .-+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 36899999999999887765432 1 26777886543222111111111 001222 2334
Q ss_pred cCCCCCCCCCCccceEEccccccCcCCH------------------------H---------------HHHHHHHHhcCC
Q 017428 215 GDALQQPFPDGQFDLVWSMESGEHMPDK------------------------S---------------KFVSELARVTAP 255 (371)
Q Consensus 215 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~------------------------~---------------~~l~~~~~~Lkp 255 (371)
+.+..--+|+++.|++++..++|++... . .+|+.=.+=|+|
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~ 175 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP 175 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence 5555555889999999999999887321 0 122222445789
Q ss_pred CcEEEEEeccCCCCCcCcc---ccChHHHHHHHHHhhc----------cCCC-CCCCHHHHHHHHHhCC-CceEEEEecC
Q 017428 256 AGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICDA----------YYLP-AWCSTADYVKLLQSLS-LEDIKAEDWS 320 (371)
Q Consensus 256 gG~l~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~ll~~aG-F~~v~~~~~~ 320 (371)
||++++.-.+.+...+... .+.......+...... +..| .+.+.+++++.+++.| |++..++.+.
T Consensus 176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~ 255 (334)
T PF03492_consen 176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFE 255 (334)
T ss_dssp EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEe
Confidence 9999999877665322211 1222233333332222 2223 2368999999998766 7766555554
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.06 E-value=0.044 Score=48.24 Aligned_cols=130 Identities=15% Similarity=0.100 Sum_probs=75.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~v~~~~~ 235 (371)
+++||-+|=..- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. | .-.++||++++. -
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD-P 120 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD-P 120 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC-C
Confidence 789999994432 333333322 789999999999999999999999984 99999999873 3 114889999864 2
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCceEE
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 315 (371)
-+.+.-..-++.+....||..|...+..++..... . . ..-++++.+.+.||.+.+
T Consensus 121 PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s-----~-----~---------------~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 121 PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS-----P-----D---------------KWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------H-----H---------------HHHHHHHHHHTS--EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc-----H-----H---------------HHHHHHHHHHHCCcCHHH
Confidence 22333456789999999997775544444332110 0 0 112567788899999877
Q ss_pred EE
Q 017428 316 AE 317 (371)
Q Consensus 316 ~~ 317 (371)
+.
T Consensus 176 ii 177 (243)
T PF01861_consen 176 II 177 (243)
T ss_dssp EE
T ss_pred HH
Confidence 64
No 268
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.05 E-value=0.034 Score=50.34 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEE
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQ 213 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~ 213 (371)
....+.++..+....... ...|+.+|||--.-+..+....+..++=+|. |+.++.-++.+.+.+ .+.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 344556666665432221 3469999999876666553321345555565 556666666676543 24678899
Q ss_pred EcCCCCC--------CCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHH
Q 017428 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (371)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 283 (371)
..|+... .+..+.--++++-.++.+++. ...+++.+.+...||+.+++-.... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 9998721 121223346677778888854 4688999998888988888754322 100 0000001111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCceEEE
Q 017428 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
.... .....+...++++++.++|.+.||.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11122223468999999999999998654
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.87 E-value=0.012 Score=58.21 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------------C-
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------P- 221 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~- 221 (371)
.++.+|+=+|+|. |..++..++.+|+.|+++|.+++-++.+++. | .++...|..+. .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 3589999999996 7778888888899999999999998888762 2 33332222110 0
Q ss_pred -------CCC--CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -------~~~--~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.+ ..+|+|+..-....-+.+..+.+++.+.+||||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 3589998765543333444446999999999999888654
No 270
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.039 Score=51.35 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
..-..+.+++..++.+. +..++|+|.|+|.++..+++.. ..++..|++|++....-++.++..
T Consensus 61 lla~~~~~~wq~~g~p~-----~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 61 LLAEQFLQLWQELGRPA-----PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHhcCCC-----CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 33334445555555433 6789999999999999888754 368999999999988888877665
No 271
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.012 Score=54.21 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=67.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCccceEEcc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWSM 233 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~fD~v~~~ 233 (371)
+.+|||+|.|.|.-+..+-..+ -..++.++.|+..-+.......... +....+...|+.. ++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehhhhh
Confidence 5789999999887766655444 2467778888866655554433222 1222233333322 1222 3567877776
Q ss_pred ccccCcCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 017428 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 234 ~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+-|-+..+ ....++.+..++.|||.|+|++.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 65555533 245889999999999999999854
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.65 E-value=0.02 Score=53.24 Aligned_cols=94 Identities=21% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~v~~~~~ 235 (371)
|+.+|+=+|+| .|..++.+++..+++|+++|.+++-.+.|++. | .-.++... ......-.+.||+|+..-.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----G---Ad~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----G---ADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----C---CcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 58999998887 45678888887799999999999999998874 2 12233322 1111111234999886532
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
...+....+.|++||.++++-..
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 45678888999999999998754
No 273
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.56 E-value=0.019 Score=51.96 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (371)
++.+.+..+..++ +...+|.--|.|+.+..+.+++ ..+++|+|-++.+++.|++++...+ +++.+++..+.
T Consensus 11 Ll~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 5677777777665 7999999999999999999998 3679999999999999999998765 68999999877
Q ss_pred CCC-----CCCCccceEEcccccc
Q 017428 219 QQP-----FPDGQFDLVWSMESGE 237 (371)
Q Consensus 219 ~~~-----~~~~~fD~v~~~~~l~ 237 (371)
++. ...+.+|-|+.-..+.
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccCC
Confidence 652 2246788888765544
No 274
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.55 E-value=0.0079 Score=57.30 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~v~~~~ 234 (371)
+.+|||.=+|+|.=++..+... ...|+.-|+|+..++..+++++.+++.+ .+++...|+..+- .....||+|=.-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 5689999999999999998885 3689999999999999999999999987 6888899986642 246889998543
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..+..++..+.+.++.||.|.++.
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 33567889999999999999999975
No 275
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.076 Score=46.66 Aligned_cols=105 Identities=15% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccc-eE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFD-LV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD-~v 230 (371)
+...+|+|+|+..-+..+.+.+ . .+++.||+|...++...+.+...-..-.+.-+.+|.+.. ..+..+-- .+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 7889999999999888887766 2 689999999999887666555443222355556665431 12223222 34
Q ss_pred EccccccCcC--CHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+...++..+. +...++..+...|+||-++++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4456777773 34789999999999999998853
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.47 E-value=0.02 Score=55.47 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK---F--GAKCQGITLSPVQAQRANALAAARGLADK 209 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 209 (371)
..-+......++++.+... .+....|+-+|+|-|-+.....+. . ..++++|+-.|.++-..+. .+...+..+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~ 422 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCe
Confidence 3445566677777655443 112456889999999987655432 2 3579999999998877665 333456689
Q ss_pred eEEEEcCCCCCCCCCCccceEEccccccCcCCH---HHHHHHHHHhcCCCcEEEEE
Q 017428 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~---~~~l~~~~~~LkpgG~l~i~ 262 (371)
|.++-.|+...+-|.++.|++++ ..|..+.|- .+.|.-+.+.|||+|+-+=.
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 423 VTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred eEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 99999999998755688997764 556666543 68999999999999876643
No 277
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.42 E-value=0.0047 Score=56.72 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
++.++++.+...+ +..++|.--|.|+.+..+++.+ +++|+|+|-++.+++.|++++... .+++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 5566777766554 8899999999999999999987 689999999999999998877543 4689999998877
Q ss_pred CC-----C-CCCccceEEccccc
Q 017428 220 QP-----F-PDGQFDLVWSMESG 236 (371)
Q Consensus 220 ~~-----~-~~~~fD~v~~~~~l 236 (371)
+. . ....+|.|++-..+
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 53 2 33578888775443
No 278
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.38 E-value=0.018 Score=59.58 Aligned_cols=104 Identities=22% Similarity=0.262 Sum_probs=61.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeCCH---HHHHH-----------HHHHHHHc-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQR-----------ANALAAAR-----GL 206 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-------------~~~v~gvD~s~---~~~~~-----------a~~~~~~~-----~~ 206 (371)
.-+|||+|=|+|.......+.. ..+++++|..| +.+.. +++..+.+ |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5899999999999766555332 13788999643 22222 22222221 11
Q ss_pred ------CC--CeEEEEcCCCCC-CCCCCccceEEcccccc-CcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESGE-HMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 207 ------~~--~v~~~~~d~~~~-~~~~~~fD~v~~~~~l~-~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
.+ ++.+..+|+.+. +--...||+|+.-..-- .-++. ..+|+.+.++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 234556776542 21125699998653221 11222 68999999999999988854
No 279
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.32 E-value=0.011 Score=55.76 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~ 232 (371)
...|||||+|||.++...++..+..|++++.-..|.+.|++...++|+.++|.++.---.+... +....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4679999999999998887775567999999999999999999999999999887655444321 1233555543
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.26 E-value=0.025 Score=49.86 Aligned_cols=91 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---CC-----CCCeEEEEc
Q 017428 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GL-----ADKVSFQVG 215 (371)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~-----~~~v~~~~~ 215 (371)
.+++..++++ ....+|||.-+|-|.-+..++.. |++|++++-||.+....+.-++.. .- ..+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3455566554 11248999999999999999864 899999999998876665443322 11 137899999
Q ss_pred CCCC-CCCCCCccceEEccccccC
Q 017428 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 216 d~~~-~~~~~~~fD~v~~~~~l~~ 238 (371)
|..+ +..++++||+|++--++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9877 3455789999998777655
No 281
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.05 E-value=0.011 Score=51.05 Aligned_cols=94 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~------~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 221 (371)
-.+|+|+.+..|.|+..+.+++ . . .|++||+.+.. . + +.|.-+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-P----------I-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-P----------I-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-c----------c-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999999876 2 1 39999997632 1 2 56888999998752
Q ss_pred -CCCCccceEEcccc-----ccCcCCH------HHHHHHHHHhcCCCcEEEEEec
Q 017428 222 -FPDGQFDLVWSMES-----GEHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 222 -~~~~~fD~v~~~~~-----l~~~~~~------~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|..++.|+|+|-.+ +|.+.+. ..+|.-...+|||||.++.--+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 55678999998643 4444322 3456667789999999987543
No 282
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.03 E-value=0.11 Score=51.50 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=77.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----CCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD 228 (371)
..+|.|..||+|.+.....+.++ ..++|.|+.+.....|+.+.--+|+..++....+|-...|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998887777652 56999999999999999998877775445666666544442 236699
Q ss_pred eEEcccccc--------------------C-c---CCH-HHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGE--------------------H-M---PDK-SKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~--------------------~-~---~~~-~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+++--+. . + ... ..+++.+...|+|||+..|+..
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 988753332 0 0 011 5789999999999997766653
No 283
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.96 E-value=0.059 Score=46.38 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHc----------
Q 017428 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAAR---------- 204 (371)
Q Consensus 138 ~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~---------- 204 (371)
...++++.+..+.-+ .+.++-|-.||.|.+...+.-.++ ..|+|-|+++.+++.|++++.-.
T Consensus 36 AsEi~qR~l~~l~~~-----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 36 ASEIFQRALHYLEGK-----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp HHHHHHHHHCTSSS------S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 334555555444332 378999999999999887765542 57999999999999988765321
Q ss_pred -------------------------------CCCCCeEEEEcCCCCCC-----CCCCccceEEccccccCcCCH------
Q 017428 205 -------------------------------GLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPDK------ 242 (371)
Q Consensus 205 -------------------------------~~~~~v~~~~~d~~~~~-----~~~~~fD~v~~~~~l~~~~~~------ 242 (371)
|-.....+...|+.+.. ......|+|+.-.-..++.+|
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 11233778888888731 112336999886555555443
Q ss_pred ---HHHHHHHHHhcCCCcEEEEEe
Q 017428 243 ---SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 243 ---~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..++..++.+|-.++++.+++
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEec
Confidence 479999999995555555543
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.91 E-value=0.034 Score=48.28 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCCCEEEEECCCcChHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC-C----CCCCCccce
Q 017428 157 KRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ-Q----PFPDGQFDL 229 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~----~~~~~~fD~ 229 (371)
.+..++||||.|..-.=-.+ ...++.+.+|.|+++..++.|+..+..+ ++...+++....-.+ + .-.++.||+
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred cCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 35789999998864322122 2234789999999999999999998877 665556665433211 1 112688999
Q ss_pred EEccccccC
Q 017428 230 VWSMESGEH 238 (371)
Q Consensus 230 v~~~~~l~~ 238 (371)
+.|+--+|.
T Consensus 157 tlCNPPFh~ 165 (292)
T COG3129 157 TLCNPPFHD 165 (292)
T ss_pred EecCCCcch
Confidence 999877764
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.90 E-value=0.082 Score=50.81 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CC-CCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PF-PDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~-~~~~fD 228 (371)
++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. + +.++...-.+ . .+ ....+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 478999999988 8888889888776 6999999999988887641 1 2222111111 0 11 223689
Q ss_pred eEEcccc---------------ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMES---------------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~---------------l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-.-. +.-..+....+.++.+.|+|+|.+++...
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 8876421 11114456788999999999999998753
No 286
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.83 E-value=0.031 Score=50.36 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=36.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C--------CEEEEEeCCHHHHHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-G--------AKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~--------~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
+.+|+|+|+|+|.++..+++.+ . .+++.||+|+.+.+..++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4799999999999999998865 1 4899999999998888888755
No 287
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.81 E-value=0.025 Score=50.98 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC--CCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~--~~~~~~fD~v~~ 232 (371)
+++||-||.|.|.+....+++- -..+.-+|++...++..++.+...- . .+++.+..+|...+ ....++||+|+.
T Consensus 122 pkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~ 201 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIIT 201 (337)
T ss_pred CCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEEE
Confidence 7899999999999988877753 2478899999999988888766542 1 25788888886553 244689999986
Q ss_pred cccccCcC--C--HHHHHHHHHHhcCCCcEEEEEec
Q 017428 233 MESGEHMP--D--KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 233 ~~~l~~~~--~--~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
--.=.-.+ . .+.+++-+.+.||+||++++..-
T Consensus 202 dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 202 DSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred ecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 32111111 1 25788899999999999999763
No 288
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.66 E-value=0.083 Score=49.80 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=61.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.+++.++.+++ .|...-+.....++.+.....+.+|+|+-.-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 478899898863 6677777777676 69999999998887765 23210011111111111111235888874321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...+..+.+.|++||.+++...
T Consensus 245 -----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 2467788899999999998764
No 289
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.073 Score=49.61 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=78.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
+.+|||.=+|||.=++.++...+. +|+.-|+||...+.+++++..+.. .+...+..|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC---
Confidence 578999999999999999988754 899999999999999999988732 3555566776554221 3678877432
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..+..++..+.+.++.||.|.++-
T Consensus 129 -PFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 -PFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred -CCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 33466788999999999999999965
No 290
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.44 E-value=0.066 Score=52.87 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------------C--
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------P-- 221 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------~-- 221 (371)
++.+||=+|+|. |..+..++...|+.|+++|.++..++.++. .| .+++..|..+. +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHHHH
Confidence 478999999996 667777777778999999999998777665 22 33433333110 0
Q ss_pred ------CC--CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 222 ------FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 222 ------~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+. -..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++-.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 245999987665554445555788899999999987643
No 291
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.31 E-value=0.018 Score=51.79 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH-------HHH--HcCCCCCeEEEEcCCCCCCC-CCC--c
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-------LAA--ARGLADKVSFQVGDALQQPF-PDG--Q 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-------~~~--~~~~~~~v~~~~~d~~~~~~-~~~--~ 226 (371)
+++|||+|||.|...+.........+...|++...++...- .+. ......-..+...+..+..+ ..+ .
T Consensus 117 ~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~~~ 196 (282)
T KOG2920|consen 117 GKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTERTH 196 (282)
T ss_pred CceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccccc
Confidence 78999999999999998877633678888888776632110 000 00000001111110001111 123 7
Q ss_pred cceEEccccccCcCCHHHH-HHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~~ 263 (371)
||+|.+..+++.......+ ......+++++|.++++-
T Consensus 197 ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 197 YDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred hhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 9999999998887776655 566667778888887753
No 292
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.019 Score=55.21 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=83.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
++.+|||.=|++|.-++..+... + .+|++-|.++..++..+++++-+++.+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 46899999999999999999887 2 579999999999999999998888777777788887654 22357899986
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.- -+..+..+|..+.+.++.||.|+++.
T Consensus 189 LD----PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD----PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 43 22345688999999999999999965
No 293
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.14 E-value=0.25 Score=46.86 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCC-Cccce
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPD-GQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~-~~fD~ 229 (371)
+.+|+=+|||. |.++..+++.++ .+|+.+|.++.-++.|++... .........+. .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999997 888888888774 689999999999999987531 22222221110 1112 36999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++-.-. ....+..+.++++|||.+.+.-....
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 885543 23578899999999999999876543
No 294
>PRK13699 putative methylase; Provisional
Probab=95.12 E-value=0.063 Score=47.55 Aligned_cols=52 Identities=17% Similarity=0.351 Sum_probs=33.6
Q ss_pred EEEEcCCCCC--CCCCCccceEEccccc----cC-----c-----CC-HHHHHHHHHHhcCCCcEEEEE
Q 017428 211 SFQVGDALQQ--PFPDGQFDLVWSMESG----EH-----M-----PD-KSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~v~~~~~l----~~-----~-----~~-~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+++.+|..+. .++++++|+|+..--. .. + .+ ...++.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566776553 4667888888764111 00 0 01 257889999999999988763
No 295
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.11 E-value=0.14 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=74.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 226 (371)
+..|+|+|.-.|+.++..|... | .+|+++|++-..++-+... . ++|.|+.++-.++. ...+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 6889999999999888887644 4 7899999987664433221 2 58999999987753 12222
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 269 (371)
--+.++..+-|+....-+.++-..++|.-|-++++.+..-++.
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 2334455666666666777888889999999999987554443
No 296
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.04 E-value=0.32 Score=44.70 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=67.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CC---------CCCC
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQ---------PFPD 224 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~---------~~~~ 224 (371)
++.+||-+|+|. |..+...++.+| .+|+.+|+++.-++.|++ + |. +.+.-+.. .. .+..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga----~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA----TVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC----eEEeeccccccHHHHHHHHHhhccc
Confidence 489999999996 777888888775 689999999999999998 2 22 11111111 11 1223
Q ss_pred CccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
..+|+.+-+..+ +..++.+...+++||.++++.+...
T Consensus 241 ~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 241 KQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 458888766443 3456777889999999988887654
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=94.98 E-value=0.11 Score=47.79 Aligned_cols=58 Identities=12% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
..++++++....- ++..|||.=+|+|..+....+. +-+++|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~------~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSN------PGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCC------CCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4466777766542 4899999999999988776664 88999999999999999999854
No 298
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.91 E-value=0.41 Score=44.60 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=63.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccceE
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~v 230 (371)
++.+||..|+| .|..+..+++..+.+|++++.++...+.+++ .++ ..+..+-... ......+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 47889998876 4778888888878899999999998887754 232 1222211111 1234568988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.... ....++++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 74321 13578889999999999998754
No 299
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.44 Score=44.60 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=75.0
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---------C
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---------F 222 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~-~~----~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~ 222 (371)
.|+.+|||+.+-.|.-+..+.+.. .. .|++-|.++.-+...........- +++.+...|+...| .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchh
Confidence 469999999999999998888876 23 799999999877777766644322 34555555544332 1
Q ss_pred CCCccceEEcc------ccccCcCCH-----------------HHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 223 PDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 223 ~~~~fD~v~~~------~~l~~~~~~-----------------~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
....||-|++- .++.+..+. ..++.+..++||+||.|+..+.+..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 33569998862 112221111 2578888999999999999886543
No 300
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.84 E-value=0.12 Score=45.34 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHH----HHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCcc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQ----AQRANALAAARGLADKVSFQVGDALQQP---FPDGQF 227 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 227 (371)
.|+.+||-+|+++|.....+.+-. ...|++|+.|... +..|+++ +||--++.|+.... ..-.-.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeeeE
Confidence 459999999999999988888866 3579999998753 3344432 57888888887642 112356
Q ss_pred ceEEccccccCcCCH-HHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~-~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|++.-. -+|. ..+.-++...||+||.++|..
T Consensus 228 DvIFaDva---qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 228 DVIFADVA---QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEEeccCC---CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 77765321 1343 344568888999999999875
No 301
>PHA01634 hypothetical protein
Probab=94.77 E-value=0.2 Score=39.43 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=40.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
+.+|+|||++-|..++.++-+....|+++++++...+..++.++..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 7899999999999999998874457999999999999998877654
No 302
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.76 E-value=0.47 Score=39.77 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=81.5
Q ss_pred ECCCcChHHHHHHHHc--CCEEEEEeCC--HHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEcc
Q 017428 165 VGCGIGGSSRYLAKKF--GAKCQGITLS--PVQAQRA---NALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (371)
Q Consensus 165 lG~GtG~~~~~l~~~~--~~~v~gvD~s--~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~ 233 (371)
||=|.=.++..|++.+ +..+++.-+. .+..+.. ..++....-.+-.-....|+.++. ...+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5666666788888876 3456665444 3332221 122222211111234566777763 256889999987
Q ss_pred ccccC--cC----C-------HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHH
Q 017428 234 ESGEH--MP----D-------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (371)
Q Consensus 234 ~~l~~--~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (371)
+-... .. + ...+++.+..+|+++|.+.|+-..... ++.=
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p----------------------------y~~W 134 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP----------------------------YDSW 134 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC----------------------------Cccc
Confidence 54322 00 1 247899999999999999998643211 1122
Q ss_pred HHHHHHHhCCCceEEEEecCCcccCcc
Q 017428 301 DYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (371)
Q Consensus 301 ~~~~ll~~aGF~~v~~~~~~~~~~~~~ 327 (371)
++.++.+++||..++...+.....|.|
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~~~~ypgY 161 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFDPSDYPGY 161 (166)
T ss_pred cHHHHHHhcCCEEEEEecCCHHHCCCc
Confidence 366888999999999888776654433
No 303
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.66 E-value=0.11 Score=45.43 Aligned_cols=54 Identities=20% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 017428 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (371)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (371)
..++++++....- ++..|||.=||+|..+....+. +.+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t~------~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTN------PGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhc------cceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 3466677765542 4899999999999998877664 8899999999999998864
No 304
>PRK13699 putative methylase; Provisional
Probab=94.29 E-value=0.23 Score=43.97 Aligned_cols=58 Identities=17% Similarity=0.108 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
.+++.++..... ++..|||.=||+|..+....+. +.+++|+|+++...+.+.++++..
T Consensus 151 ~l~~~~i~~~s~------~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTH------PNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCC------CCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 355555554432 4889999999999998877664 889999999999999999988664
No 305
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.19 E-value=0.8 Score=42.91 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+| .|..+..+++..+++|++++.++.-.+.+++ .|.. .+ .|..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~----~v-i~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA----SA-GGAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc----ee-cccccc--CcccceEEEECCCc
Confidence 48899999975 3556677777778899999999888777665 3431 11 121111 12457876543321
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+....+.|++||.+++.-.
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2468889999999999988764
No 306
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.09 E-value=0.13 Score=47.00 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=72.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--------C-------------CEEEEEeCCHH--HHHHHHHHHHHc----------
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--------G-------------AKCQGITLSPV--QAQRANALAAAR---------- 204 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--------~-------------~~v~gvD~s~~--~~~~a~~~~~~~---------- 204 (371)
+..+||-||.|.|.-...++..+ . ..|+.||+.+- .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35799999999988666555443 0 27999998754 333333322222
Q ss_pred ---CC-C--CCeEEEEcCCCCCCCC-------CCccceEEccccccCc-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 205 ---GL-A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 205 ---~~-~--~~v~~~~~d~~~~~~~-------~~~fD~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. + -++.|.+.|+.....+ ....|+|...+++..+ ..-.++|.++...++||-.|+|+|.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 1578999999886422 1357888877766544 3447899999999999999999984
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.01 E-value=0.18 Score=40.00 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=60.1
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccceEEccccccCcCC
Q 017428 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (371)
Q Consensus 168 GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~v~~~~~l~~~~~ 241 (371)
|.|..+..+++..|++|+++|.++.-.+.+++ .|. -.++..+-.+. . .....+|+|+-+-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEecC------
Confidence 45888999999889999999999998888776 331 12222222211 1 23357999875422
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccC
Q 017428 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 242 ~~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
....++....+|+|+|.++++....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2468899999999999999987543
No 308
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.98 E-value=0.36 Score=46.56 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++.+++..++. .++.+|+=+|+|. |......++.+|++|+++|.++.-.+.|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 455566554432 2489999999996 656666666668999999999987776654 23 2222 1111
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHH-HHHhcCCCcEEEEEe
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVT 263 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 263 (371)
. . ..+|+|+..- ... .++.. ..+.+|+||.++.+.
T Consensus 254 ~-v--~~aDVVI~at-----G~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A-V--KEGDIFVTTT-----GNK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H-H--cCCCEEEECC-----CCH-HHHHHHHHhcCCCCcEEEEeC
Confidence 1 1 3479887642 233 34544 589999999998775
No 309
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.91 E-value=0.35 Score=45.74 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 229 (371)
++.+||=+|+|. |..+..+++..+++|++++. ++.-.+.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 478899999874 66777788877889999987 5666665543 332 222 211111 01245888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+-.-. . ...+..+.+.|++||.+++....
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 875432 1 23678889999999999887643
No 310
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.85 E-value=1.2 Score=41.17 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSF 212 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~ 212 (371)
.....++++..+...-... -..|+-+|||--.-+-.+-...+.+|+-+|. |+.++.=++.++..+. |..+++
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 4455566776665433221 4679999998644333332211456777777 6666666666666542 337899
Q ss_pred EEcCCCCCC----CC-----CCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHH
Q 017428 213 QVGDALQQP----FP-----DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (371)
Q Consensus 213 ~~~d~~~~~----~~-----~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 281 (371)
+..|+.+.. +. .+.--++++-+++.+++. ..+++..+...+.||-.++................ ...
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~--~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRP--AAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccch--hhh
Confidence 999998543 22 233346777788888854 47899999999888888777643111110000000 000
Q ss_pred HHHHHHhhccC--CCCCCCHHHHHHHHHhCCCceEEE
Q 017428 282 ELLKKICDAYY--LPAWCSTADYVKLLQSLSLEDIKA 316 (371)
Q Consensus 282 ~~~~~~~~~~~--~~~~~~~~~~~~ll~~aGF~~v~~ 316 (371)
........... .-......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 00000000001 111346899999999999997654
No 311
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=93.76 E-value=0.2 Score=41.19 Aligned_cols=99 Identities=22% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCC-CCCCCccceEEcccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
+++++-+|+.. -|...++-..| ++|..|+..+--++. + ..+++ .+...|+... ..-.++||.+.+..+
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~--~------~~dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQE--E------FRDRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCc--c------cccccccccHHHHHHHHHHhhccchhhheech
Confidence 57888898874 34444544444 568888876521111 0 00111 1122222211 112478999999999
Q ss_pred ccCc-----CCH------HHHHHHHHHhcCCCcEEEEEeccC
Q 017428 236 GEHM-----PDK------SKFVSELARVTAPAGTIIIVTWCH 266 (371)
Q Consensus 236 l~~~-----~~~------~~~l~~~~~~LkpgG~l~i~~~~~ 266 (371)
++|+ .|+ .+.+.++.++|||||.|++..+..
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 9987 222 578889999999999999987543
No 312
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.76 E-value=0.05 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.422 Sum_probs=27.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~ 191 (371)
+....+|||||.|.+...|... |..-.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCcccccccc
Confidence 4678999999999999888776 77788888743
No 313
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.57 E-value=0.022 Score=43.63 Aligned_cols=84 Identities=11% Similarity=0.260 Sum_probs=43.2
Q ss_pred ccceEEccccccCcC----C--HHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCH
Q 017428 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~----~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (371)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---....+. ......+. ......... +.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~-~~~~~~~~----~~~n~~~i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYK-KAKRLSEE----IRENYKSIK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHH-TTTTS-HH----HHHHHHH--------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHH-HHhhhhHH----HHhHHhceE----ECh
Confidence 489999887765542 2 36899999999999999998531111100 00011111 111112221 246
Q ss_pred HHHHHHHHh--CCCceEEEEe
Q 017428 300 ADYVKLLQS--LSLEDIKAED 318 (371)
Q Consensus 300 ~~~~~ll~~--aGF~~v~~~~ 318 (371)
+++.+.|.+ .||..++...
T Consensus 72 ~~F~~~L~~~evGF~~~e~~~ 92 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEELG 92 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE-
T ss_pred HHHHHHHHhcccceEEEEEcc
Confidence 678888877 6999877543
No 314
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.41 E-value=0.29 Score=47.05 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCEEEEECCCcC--hHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEc-CCCC--CCC-CCCccceE
Q 017428 159 PKNVVDVGCGIG--GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVG-DALQ--QPF-PDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG--~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~-d~~~--~~~-~~~~fD~v 230 (371)
+..++|+|.|.| .++....... ...++.||.|..|........... .. ..+ ++.. -+.+ +|. ..+.||+|
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~-~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEP-IVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cch-hccccchhcccCCCCcccceeeE
Confidence 567888887754 4555554443 457999999999999988876551 10 011 1111 1111 232 34569999
Q ss_pred EccccccCcCCH---HHHHH-HHHHhcCCCcEEEEEecc
Q 017428 231 WSMESGEHMPDK---SKFVS-ELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 231 ~~~~~l~~~~~~---~~~l~-~~~~~LkpgG~l~i~~~~ 265 (371)
++.+.++++.+. ..+.+ ..++..++||.+++++-.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 999999999654 23333 345667899999998843
No 315
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=93.38 E-value=0.065 Score=49.35 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=75.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHH-------HHHHHHHHcCCC-CCeEEEEcCCCCCCC-CCCccc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ-------RANALAAARGLA-DKVSFQVGDALQQPF-PDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~-------~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~~fD 228 (371)
++..|.|-=.|||.+....+. +|+-|+|.|++-.++. ..+.++++.|.. .-+.+..+|..+.++ ....||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 589999999999999887776 4999999999988887 346677777743 346778889888764 357799
Q ss_pred eEEccc------------------------cccCcCC---------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 229 LVWSME------------------------SGEHMPD---------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 229 ~v~~~~------------------------~l~~~~~---------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+|-- .-.|++. ...++.-..+.|.-||++++--
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 999821 1112211 1345666678888888888754
No 316
>PTZ00357 methyltransferase; Provisional
Probab=93.30 E-value=0.54 Score=47.46 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=67.9
Q ss_pred CEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFPD-- 224 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~-- 224 (371)
..|+-+|+|-|-+.....+.. ..+|++|+-++..+.....+. ....+ .+.|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 469999999999866655433 358999999966554544443 22233 245999999999874321
Q ss_pred ---------CccceEEccccccCcCCH---HHHHHHHHHhcCC----CcE
Q 017428 225 ---------GQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (371)
Q Consensus 225 ---------~~fD~v~~~~~l~~~~~~---~~~l~~~~~~Lkp----gG~ 258 (371)
+.+|+|++ ..|..+.|. .+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 36898875 556666543 6788888888887 776
No 317
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.17 E-value=0.23 Score=44.39 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~ 229 (371)
++.+||-.|+|+ |..+..+++..+.+|++++.++...+.+++. +. ..++ +..+.. ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 478999999986 6677777776688999999998877766442 21 1111 211111 12356999
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 875422 1 1457778889999999988754
No 318
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.17 E-value=1.7 Score=33.56 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCcChHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEccccccCc
Q 017428 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 167 ~GtG~~~~~l~~~~--~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~~~~l~~~ 239 (371)
||.|..+..+++.+ + ..|+.+|.+++.++.+++ ..+.++.+|..+.. ..-+..|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 57778888888877 4 489999999999887765 24779999998752 2235677776643
Q ss_pred CCH--HHHHHHHHHhcCCCcEEEEEe
Q 017428 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 240 ~~~--~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++. ...+....+-+.|...++...
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 232 223444556677777777654
No 319
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=93.12 E-value=2.9 Score=39.99 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=59.9
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHcC----CEEEEEeC----CHHHHHHHHHHHH----HcCCCCCeEEEEc---CCC
Q 017428 158 RPKNVVDVGCGIGG----SSRYLAKKFG----AKCQGITL----SPVQAQRANALAA----ARGLADKVSFQVG---DAL 218 (371)
Q Consensus 158 ~~~~VLDlG~GtG~----~~~~l~~~~~----~~v~gvD~----s~~~~~~a~~~~~----~~~~~~~v~~~~~---d~~ 218 (371)
+..+|+|+|.|.|. +...|+.+-+ .+||||+. +...++.+.+++. ..|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 37899999999987 2333444321 47999999 7777777666543 34664 555553 333
Q ss_pred CCC-----CCCCccceEEccccccCcCC-------H-HHHHHHHHHhcCCCcEEEEE
Q 017428 219 QQP-----FPDGQFDLVWSMESGEHMPD-------K-SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 219 ~~~-----~~~~~fD~v~~~~~l~~~~~-------~-~~~l~~~~~~LkpgG~l~i~ 262 (371)
++. ...+..=+|-+...+||+.+ + ..+| ...+.|+|.-.+++-
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L-~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFL-RVIRSLNPKVVVLVE 243 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHH-HHHHhcCCCEEEEEe
Confidence 321 22233334445566788742 2 3355 455578998555443
No 320
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.94 E-value=0.45 Score=44.56 Aligned_cols=41 Identities=37% Similarity=0.503 Sum_probs=35.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~ 199 (371)
-..|+|+|.|.|.++..+.-.++..|.+||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 45699999999999999988889999999999766665554
No 321
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.85 E-value=0.35 Score=44.15 Aligned_cols=102 Identities=19% Similarity=0.177 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 157 ~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
-++.+|.=||.|. |..+..++--+++.|+.+|+|..-+.+....+. .++...-....++...-...|+||..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 3467889999885 677777777669999999999988877666542 3566665555444322356899987666
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.-..+.-+.+++.+.+|||+.++=+-
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 6565677888999999999999887543
No 322
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.84 E-value=1.8 Score=37.58 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCccceEEc
Q 017428 159 PKNVVDVGCGIGG----SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~----~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~ 232 (371)
...|+++.|+.|. ++...|.+. +.+++.|-+.+.-+...++.+...++.+.++|++++..+ .-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 6789999766442 334444444 789999999988888888888878877678999988533 2111245788776
Q ss_pred cccccCcCCHH-HHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKS-KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~-~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.- ..|.. ++|+.+. +.|.|.+++..
T Consensus 122 Dc~---~~d~~~~vl~~~~--~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCK---REDFAARVLRAAK--LSPRGAVVVCY 148 (218)
T ss_pred eCC---chhHHHHHHHHhc--cCCCceEEEEe
Confidence 432 23333 4443322 44567777754
No 323
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=2.6 Score=38.61 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHH
Q 017428 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRA 197 (371)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a 197 (371)
......+...+.... ....|+.+|||.-.+...+...+ ...++=||.++......
T Consensus 72 ~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 72 MAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred HHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence 344445555555522 36789999999999888887765 35677778777655444
No 324
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.66 E-value=0.34 Score=44.27 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=49.3
Q ss_pred EEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCccceEEcccc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMES 235 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~v~~~~~ 235 (371)
+|+|+-||.|.+...+.+. |. .+.++|+++..++..+.++. +. +...|+.+.... ...+|+|+..--
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999998888765 44 47789999999888777542 12 566777776421 356999987543
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.65 E-value=0.69 Score=43.25 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCccceEEc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~v~~ 232 (371)
++.+||-.|+|. |..+..+++..+. .+++++.++...+.+++ .+.. .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 478899988875 6677777777777 79999999888776544 2321 112111 1111111245898875
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.... ...++.+.+.|+++|.++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 245788899999999998764
No 326
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.57 E-value=0.66 Score=43.02 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=56.4
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
+.+||=+|||. |.++..+++..+++ |+++|.++..++.+... . ..|..+. ....+|+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------~i~~~~~--~~~g~Dvvid~~G- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------VLDPEKD--PRRDYRAIYDASG- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------ccChhhc--cCCCCCEEEECCC-
Confidence 66788888764 77778888877775 66788888776655431 1 1111111 1245898875422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...+..+.+.|++||.+++.-.
T Consensus 210 ----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467888899999999998764
No 327
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.32 E-value=0.65 Score=44.28 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. .++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhCCCCCEE
Confidence 378888898763 5666777777677 69999999998887764 2321 1111111110 0112368888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.-. . ...+..+.+.|+++|.+++...
T Consensus 264 id~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 74321 1 2467788899999999988653
No 328
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.16 E-value=0.89 Score=40.85 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=70.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~v~~~ 233 (371)
.+..|+-+| -.-..++.++-.. ..+|..+|+++..+...++.++..|+ +|++.+.-|+.+ |+| ...||+++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 367799998 3344444444332 57899999999999999999999998 579999999977 344 378998764
Q ss_pred ccccCcCCHHHHHHHHHHhcCCC---cEEEEE
Q 017428 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIV 262 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~Lkpg---G~l~i~ 262 (371)
.--+.+.-...++.+=...||.- |++.+.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 22333333455666666677766 666664
No 329
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.05 E-value=1.1 Score=42.10 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+||=+|||. |..+..++++ . +.+|+++|.++.-++.+++ .+. . ....+. . ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~~~~~---~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YLIDDI---P-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-eehhhh---h-hccCCcEEEECC
Confidence 488999999874 5556666765 3 4689999999988877754 121 1 111111 1 112488887432
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ......+....++|++||.+++.-.
T Consensus 231 G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 1 1124578889999999999998764
No 330
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.57 E-value=1.1 Score=42.36 Aligned_cols=92 Identities=20% Similarity=0.165 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. .++ +..+.. .....+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i--~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTV--NSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEE--cCCCcCHHHHHHHHhCCCCC
Confidence 488999998764 6667777777777 59999999988888754 2321 111 111111 122358
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-.- .. ...+....+.+++||.+++...
T Consensus 247 d~vid~~-----g~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 247 DVVIDAV-----GR-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CEEEECC-----CC-HHHHHHHHHHhccCCEEEEECC
Confidence 8887432 12 2457778889999999998754
No 331
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=91.40 E-value=0.24 Score=49.07 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=60.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
+...|||+||..|.|....++.. +.-|+|||+-|.- .++++.-.+.|+.... ...-+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988877 6789999998843 3356777777776531 123345
Q ss_pred ceEEccccccCcC-CH-----------HHHHHHHHHhcCCCcEEE
Q 017428 228 DLVWSMESGEHMP-DK-----------SKFVSELARVTAPAGTII 260 (371)
Q Consensus 228 D~v~~~~~l~~~~-~~-----------~~~l~~~~~~LkpgG~l~ 260 (371)
|+|+.-. .+.+. .+ -..++-+...|+-||.++
T Consensus 112 dvVLhDg-apnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 112 DVVLHDG-APNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred cEEeecC-CCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc
Confidence 8776533 22221 11 234555667788999944
No 332
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.19 E-value=2.8 Score=39.23 Aligned_cols=94 Identities=20% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-P-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-~-~~~~~fD~v 230 (371)
++.+||=+|+|. |..+..+++..+++ |++++.+++..+.+++ .|.. .++...-.+ . . .....+|+|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 378999888753 55666677766877 9999999988777654 2321 111111000 0 0 122368988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-... . ...+..+.+.|+++|.+++...
T Consensus 236 id~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSG-----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 74321 1 2356777889999999988654
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.18 E-value=2.1 Score=39.02 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||=+|+|. |..+..+++..+++ |+++|.++.-.+.+++ .|. .... +..+.. .....+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga----~~~i-~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGA----TALA-EPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC----cEec-CchhhHHHHHHHhCCCCCCE
Confidence 478899998764 55666777766775 9999999887777665 232 1111 111110 11235888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.- .. ...++.+.+.|+|+|.+++...
T Consensus 191 vid~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 191 ALEFS-----GA-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred EEECC-----CC-hHHHHHHHHHhcCCCEEEEecc
Confidence 86432 11 3467888999999999998764
No 334
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=90.93 E-value=0.5 Score=42.87 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=69.1
Q ss_pred CCEEEEECCCcChHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+..|+|+=+|-|+++. .+.......|+++|.+|..++..+..++.+++..++.+..+|-... -+....|.|.....-.
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLGLlPS 273 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLGLLPS 273 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeeccccc
Confidence 5789999999999998 4444424579999999999999999999988877777788886554 3567888887653322
Q ss_pred CcCCHHHHHHHHHHhcCCCcE
Q 017428 238 HMPDKSKFVSELARVTAPAGT 258 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~ 258 (371)
.-..+. .+.++|||.|-
T Consensus 274 se~~W~----~A~k~Lk~egg 290 (351)
T KOG1227|consen 274 SEQGWP----TAIKALKPEGG 290 (351)
T ss_pred cccchH----HHHHHhhhcCC
Confidence 222333 34556666554
No 335
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.80 E-value=5 Score=35.12 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.|++ |..+..+++.+ +.+|++++-++.......+..... .++.++..|+.+.. +. -+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5789999875 55555555544 789999999887666554444332 25788899987642 00 13
Q ss_pred ccceEEccccccCcC---C--------------HHHHHHHHHHhcCCCcEEEEEec
Q 017428 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~---~--------------~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
..|.++......... + ...+++.+...++.+|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 468777654332111 1 11335566667778888777653
No 336
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.63 E-value=1 Score=40.28 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCH----------------------
Q 017428 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSP---------------------- 191 (371)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~---------------------- 191 (371)
..+..+++.+-... -+.-|+|+||-.|..++.++..+ +.++.+.|.-+
T Consensus 60 ~~L~~~~~~v~~~~----vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 60 DNLYQAVEQVLAED----VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHCCHTT----S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHhcC----CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 34445555443222 26789999999998776654422 24688888321
Q ss_pred ----HHHHHHHHHHHHcCC-CCCeEEEEcCCCC-CC-CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 192 ----VQAQRANALAAARGL-ADKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 192 ----~~~~~a~~~~~~~~~-~~~v~~~~~d~~~-~~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+..++++.+.++ .+++.++.+.+.+ +| .+.+.+-++.+-.=++ .....+|..++..|.|||++++-++
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 123444444444443 4589999999755 22 2233333332221111 2336789999999999999999664
No 337
>PRK11524 putative methyltransferase; Provisional
Probab=90.61 E-value=0.58 Score=42.97 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=37.5
Q ss_pred CeEEEEcCCCCC--CCCCCccceEEcccccc---C---c----------CCHHHHHHHHHHhcCCCcEEEEE
Q 017428 209 KVSFQVGDALQQ--PFPDGQFDLVWSMESGE---H---M----------PDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 209 ~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~---~---~----------~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
+..++.+|..+. .+++++||+|++.=-.. . . .-...++.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887764 35678899998842111 0 0 01146889999999999999985
No 338
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=90.60 E-value=1.4 Score=41.65 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcCC
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARGL 206 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~-------~~~~~~ 206 (371)
.+.+...+..+++.+.+++ .....|+|+|.|.....++...+ ..-+|+++....-+.|... .+-.|.
T Consensus 174 GE~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk 248 (419)
T KOG3924|consen 174 GETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK 248 (419)
T ss_pred hhhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC
Confidence 3445556677777777775 88999999999999988877543 3456776654433333222 222233
Q ss_pred -CCCeEEEEcCCCCCC---CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 207 -ADKVSFQVGDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 207 -~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..++.+.+++.+.. .-....++|+++++... ++...-+.++..-+++|-+++-..
T Consensus 249 ~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 249 KPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred CcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccc
Confidence 455778888876642 11355788888876643 333444558888899998888765
No 339
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=90.58 E-value=3.7 Score=38.78 Aligned_cols=94 Identities=14% Similarity=0.065 Sum_probs=61.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DALQ-Q-PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~-~-~~~~~~fD~ 229 (371)
++.+||=.|+ |.|..+..+++..|++|++++.++...+.+++. .|.. .++.. +..+ . ....+.+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCCcEE
Confidence 4889999987 367888888888899999999998877766522 2321 11211 1110 0 011246888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.- . ...+..+.+.|++||.+++.-.
T Consensus 232 v~d~v-----G--~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 232 YFDNV-----G--GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEECC-----C--HHHHHHHHHHhccCCEEEEECc
Confidence 87432 1 2467888999999999988653
No 340
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.48 E-value=0.21 Score=39.62 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=47.5
Q ss_pred eEEEEcCCCCC-CCCCCccceEEccccccCcCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHH
Q 017428 210 VSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (371)
Q Consensus 210 v~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 284 (371)
+.+..+|+.+. +--...||+|+.-. +.--.++ ..++++++++++|||.+.-..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 55666776442 21136789888653 2222333 689999999999999877532
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCceEEEEec
Q 017428 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (371)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 319 (371)
....+++.|.++||.+.....+
T Consensus 91 -------------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 -------------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp --------------BHHHHHHHHHCTEEEEEEE-S
T ss_pred -------------chHHHHHHHHHcCCEEEEcCCC
Confidence 3445889999999998776654
No 341
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.25 E-value=2.4 Score=38.29 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=59.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++. |....+ .. ..........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~--~~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AA--DTADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--cc--cchhhhcCCCCCEEEEccC
Confidence 478899888865 66777777777777 99999999887766652 211111 10 0000112346898875321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+....+.|+++|.++...
T Consensus 169 ------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1246778899999999998764
No 342
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.93 E-value=3 Score=35.43 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=58.6
Q ss_pred CCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcccccc
Q 017428 159 PKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (371)
Q Consensus 159 ~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~ 237 (371)
+.+||=+|.- ||.....+..+ .++|+.+|+.|.+-.. +|+++.|... +.++.+.+|+|+-...+.
T Consensus 45 ~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 45 FKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEeccccC
Confidence 6889999875 66666666554 6899999999987554 6778877655 334568899999887777
Q ss_pred CcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 238 ~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.+.- +..+-+.| +.+++-+.
T Consensus 111 G~~P------e~L~~fnp-~vfiVEdP 130 (254)
T COG4017 111 GIEP------EFLAKFNP-KVFIVEDP 130 (254)
T ss_pred CCCH------HHHhccCC-ceEEEECC
Confidence 6532 23344556 44555443
No 343
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.93 E-value=3 Score=38.77 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=60.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~v~ 231 (371)
++.+||-+|+|. |..+..+++..+.+ |++++.+++..+.+++ .+.. .++..+-.+. ......+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 478999998653 66667777776776 8999999888777643 2321 2222111110 01235689888
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.... ....+.++.+.|+++|.++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13567888999999999987654
No 344
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.42 E-value=2.5 Score=39.88 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=59.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CC-CCCccc--
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PF-PDGQFD-- 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~-~~~~fD-- 228 (371)
++.+||=+|+|. |..+..+++..+++|+++|.++..++.+++ .|...-+.....+..+. .+ ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999865 667777888778899999999998887754 23210011001000000 00 112344
Q ss_pred --eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 229 --~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
+|+- .... ...++.+.+.|++||.+++....
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 4432 1112 34667788899999999987643
No 345
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.37 E-value=4.5 Score=36.37 Aligned_cols=73 Identities=29% Similarity=0.251 Sum_probs=48.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|..+..+++.+ +++|++++.++..+....+.+...+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67888888 4556666655544 7899999998877665554444433 35778888987632 1 124
Q ss_pred ccceEEccc
Q 017428 226 QFDLVWSME 234 (371)
Q Consensus 226 ~fD~v~~~~ 234 (371)
..|+++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 579988654
No 346
>PLN02740 Alcohol dehydrogenase-like
Probab=89.35 E-value=1.9 Score=41.19 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=59.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--C-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--Q-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-----~~~~~~fD 228 (371)
++.+||=+|+|. |..+..+++..++ +|+++|.+++.++.+++ .|.. .++...-.+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 488999999864 5566777777777 69999999988888765 3321 122111100 0 01123689
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.-. . ...+......+++| |.+++...
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 8875322 1 24677888889997 98877654
No 347
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.18 E-value=0.86 Score=43.55 Aligned_cols=101 Identities=17% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+|+=+|+| .|..+...+..+|++|+.+|.++..++.+.... + ..+.....+...+.-.-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 46779999988 466666666766889999999987665544322 1 11211111111111001458999865322
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
..-..+.-+-+++.+.++||+.++-..
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 111112112356667789998777644
No 348
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.08 E-value=0.27 Score=46.66 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=53.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~ 219 (371)
++..|.|+-||.|-+++.++.+ ++.|++-|+.++++++.+.+++-+.+.+. ++.+..|+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 4889999999999999999988 79999999999999999999888777665 8887777643
No 349
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.07 E-value=7.1 Score=36.19 Aligned_cols=92 Identities=15% Similarity=0.098 Sum_probs=60.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQ-----PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-----~~~~~~fD~ 229 (371)
++.+||=.|. |.|..+..+++..|++|++++.+++..+.+++ .|.. .++..+- ... ....+.+|+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHHhCCCCeEE
Confidence 4889998884 46888888888878899999999888777654 3331 1111111 011 012246888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-.- .. ..+..+.++|+++|.++...
T Consensus 211 v~d~~-----G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----CH--HHHHHHHHHhCcCcEEEEec
Confidence 87421 11 34678899999999999764
No 350
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=88.95 E-value=5 Score=37.22 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=59.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 235 (371)
++.+||-+|+| .|..+..+++..+.+|++++.++...+.+++ .+. -.++...-.... -..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGA---DEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC---cEEeccCCcchHHhccCCCCEEEECCC
Confidence 47889999887 5777777777778899999999988777643 221 111111100100 01245888875321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
. ...+..+.+.|+++|.++...
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 246778889999999998875
No 351
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.74 E-value=3.9 Score=39.46 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......++.++++|+++|.++.....+.. .| ..+ .+..+. . ...|+|+..-
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v--~~leea-l--~~aDVVItaT-- 258 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRV--MTMEEA-A--KIGDIFITAT-- 258 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEe--CCHHHH-H--hcCCEEEECC--
Confidence 488999999986 555555666668999999999865444332 22 222 222221 1 3468887632
Q ss_pred cCcCCHHHHHH-HHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 264 (371)
.. ..++. +....+|+|++++....
T Consensus 259 ---G~-~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 259 ---GN-KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred ---CC-HHHHHHHHHhcCCCCcEEEEECC
Confidence 22 34444 58889999999888653
No 352
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=88.46 E-value=2.9 Score=38.67 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++ .|.. .++...-.+. ......+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHCCCCcEEE
Confidence 4788988873 56778888888889999999999887777655 3331 1121111111 1122458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.- . ...+..+.+.|+++|.++...
T Consensus 216 ld~~-----g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNV-----G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECC-----C--HHHHHHHHHhhccCCEEEEEc
Confidence 7431 1 245788899999999998764
No 353
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.44 E-value=7.8 Score=36.83 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC----CCC-C-CCCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD----ALQ-Q-PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~-~-~~~~~~fD~ 229 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.++...+.+++ .|.. ..+...+ ..+ . ....+.+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~--~~i~~~~~~~~~~~~v~~~~~~g~d~ 258 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGAT--DCVNPNDYDKPIQEVIVEITDGGVDY 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC--eEEcccccchhHHHHHHHHhCCCCCE
Confidence 488999999864 6677778887777 79999999998887755 2321 1111111 000 0 011235888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
|+-.- .. ...+..+.+.+++| |.+++...
T Consensus 259 vid~~-----G~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 259 SFECI-----GN-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEECC-----CC-HHHHHHHHHHhhcCCCeEEEEec
Confidence 76432 11 34677888899886 99887754
No 354
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=88.28 E-value=2.1 Score=40.27 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCCccc-e
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q--PFPDGQFD-L 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~~~fD-~ 229 (371)
++.+||=.|+|+ |..+..+++..+++ |++++.+++..+.+++ .|.. .++..+-.. . ......+| +
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM---QTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---eEecCcccCHHHHHHHhcCCCCCeE
Confidence 478999998764 55667777777776 7899999988777643 2321 111111000 0 01223577 5
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-. ... ...+....+.|++||.+++...
T Consensus 233 v~d~-----~G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 233 ILET-----AGV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEEC-----CCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 4421 122 3467888999999999998764
No 355
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.00 E-value=5.9 Score=36.91 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~v 230 (371)
++.+||-.|+|. |..+..+++..+.+|+++..+++..+.+++. +. -.++...-... ..+...+|+|
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GA---DDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CC---CEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 478999998764 7777888887788999998888887776442 21 11111111110 0123458988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+.... . ...+..+.+.|+++|.++....
T Consensus 232 ld~~g-----~-~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 232 IDATG-----N-PASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred EECCC-----C-HHHHHHHHHHHhcCCEEEEEcC
Confidence 75421 1 3457888999999999887653
No 356
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.87 E-value=25 Score=35.54 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-----C--CCCCeEEEEcCCCCCC-C--CC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAAR-----G--LADKVSFQVGDALQQP-F--PD 224 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~~~-~--~~ 224 (371)
.+..||-.|+ +|..+..+++.+ |.+|++++.+...+......+... + ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 3667777774 566777766655 789999998877665443333221 1 1135889999998742 1 12
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+..|+||++...
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 457988876443
No 357
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=87.86 E-value=2.8 Score=39.78 Aligned_cols=95 Identities=23% Similarity=0.228 Sum_probs=55.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+|. |..+..+++..++++++++.++.....+. +..|.. .++. .+........+.+|+|+-.-.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 477888898864 66777788877889999888765433221 123321 1111 110011000124788774321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...++++.+.|++||.++....
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 2 2357788899999999988753
No 358
>PLN02494 adenosylhomocysteinase
Probab=87.86 E-value=2.2 Score=41.74 Aligned_cols=102 Identities=17% Similarity=0.155 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (371)
.++.+++...+. ..+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. ++.+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455555544432 1478999999985 444444555558999999999865444332 12 2221 2222
Q ss_pred CCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 220 ~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ...|+|+.... +..-+..+....+|+||.|+.+..
T Consensus 306 a-l--~~ADVVI~tTG-----t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 306 V-V--SEADIFVTTTG-----NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred H-H--hhCCEEEECCC-----CccchHHHHHhcCCCCCEEEEcCC
Confidence 1 1 34798886322 222334778889999999998753
No 359
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.82 E-value=8.8 Score=33.54 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=49.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=+| |+|.++..+++.+ +.+|++++.++.......+.+... .++.++.+|+.+.. +. .+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57788888 4677777776655 789999998887665554444322 36888899987642 10 13
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|.|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (237)
T PRK07326 82 GLDVLIANAGV 92 (237)
T ss_pred CCCEEEECCCC
Confidence 68888866543
No 360
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.71 E-value=1.8 Score=34.15 Aligned_cols=91 Identities=22% Similarity=0.362 Sum_probs=48.1
Q ss_pred CCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~~-~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
..+|+|||-|.-.- +..|.+. |..|+++|+.+.- .+..+.++..|+.+.... =...|+|++...-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~------------a~~g~~~v~DDif~P~l~iY~~a~lIYSiRPP 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRK------------APEGVNFVVDDIFNPNLEIYEGADLIYSIRPP 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECcccc------------cccCcceeeecccCCCHHHhcCCcEEEEeCCC
Confidence 56999999997654 4455554 8999999999861 124678999999885421 1357888765422
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++.+..+.++.+. -|.-++|...+.+
T Consensus 81 ---~El~~~il~lA~~--v~adlii~pL~~e 106 (127)
T PF03686_consen 81 ---PELQPPILELAKK--VGADLIIRPLGGE 106 (127)
T ss_dssp ---TTSHHHHHHHHHH--HT-EEEEE-BTTB
T ss_pred ---hHHhHHHHHHHHH--hCCCEEEECCCCC
Confidence 3444555555553 3567777765544
No 361
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.66 E-value=2.5 Score=40.48 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
++.+||-|++|.......+.+. ..+|++||++|.|....+-++..
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 3899999987766666665554 78999999999999888766543
No 362
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.48 E-value=11 Score=34.39 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=58.2
Q ss_pred CCCCEEEEECCCcCh---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 017428 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~---~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (371)
-.+..||==|.|.|. .+..++++ ++.+...|+...-.+...+.+++.| .+.....|+.+.. -.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 347788888888775 44555555 7899999999988888888777665 6889999988752 12
Q ss_pred CCccceEEccccccCc
Q 017428 224 DGQFDLVWSMESGEHM 239 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~ 239 (371)
-+..|+++.+..+-+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4678988887665443
No 363
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.38 E-value=7.1 Score=36.52 Aligned_cols=94 Identities=21% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--CCCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-------Q--PFPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~--~~~~~~ 226 (371)
++.+||-.|+|. |..+..+++..+.+ |+.++.++...+.+++. +.. .++..+-.. + ......
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHHHhCCCC
Confidence 478888888765 66777788877877 89998888887766542 221 111111111 0 122355
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+|+-...- ...+..+.+.|+++|.++....
T Consensus 235 ~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 235 PDVVIECTGA------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 8998854221 2367888999999999887653
No 364
>PLN02827 Alcohol dehydrogenase-like
Probab=87.35 E-value=2 Score=41.06 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=57.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--C-------CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--P-------FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-------~~~~~ 226 (371)
++.+||=.|+|. |..+..+++..+. .|+++|.++...+.+++ .|.. .++ +..+. + ...+.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i--~~~~~~~~~~~~v~~~~~~g 263 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFI--NPNDLSEPIQQVIKRMTGGG 263 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEE--cccccchHHHHHHHHHhCCC
Confidence 488999998764 5566677776676 58899999988777654 3331 111 11110 0 11235
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+|+-.-. . ...+....+.|++| |.+++.-.
T Consensus 264 ~d~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 264 ADYSFECVG-----D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCEEEECCC-----C-hHHHHHHHHhhccCCCEEEEECC
Confidence 888874321 1 23567788899998 99987653
No 365
>PRK08324 short chain dehydrogenase; Validated
Probab=87.32 E-value=6.3 Score=40.99 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|+ +|..+..+++.+ |++|+.+|.++..++.+.+.+... .++.++..|+.+.. +. .+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 467887775 455555555544 789999999987776655544322 36888889987642 11 24
Q ss_pred ccceEEccccccCcCC-------------------HHHHHHHHHHhcCC---CcEEEEEe
Q 017428 226 QFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (371)
Q Consensus 226 ~fD~v~~~~~l~~~~~-------------------~~~~l~~~~~~Lkp---gG~l~i~~ 263 (371)
.+|+|+.+........ ...+++.+.+.++. ||.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899887665432211 23456666777766 67777765
No 366
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.23 E-value=6.2 Score=36.82 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++ .+. ..++...-.+. -...+.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~---~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGA---TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCC---cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 47888888775 36677778887774 88999888877666554 221 11111111110 012356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-...- ...+.++.+.|+++|.++...
T Consensus 240 vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 8753211 246888899999999988664
No 367
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.17 E-value=14 Score=32.73 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ +++|+.++-+++.++...+.++..+ .++.++..|+.+.. + .-+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678888885 555566665554 7899999999877766655555443 46888999987642 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
+.|.|+.+...
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67888866543
No 368
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.16 E-value=4.2 Score=38.09 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CC-CCCccceEEc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PF-PDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-~~~~fD~v~~ 232 (371)
++.+||=.|+ |.|.+++.|++..++.++++--+++..+.+++ .|.+.-+.+...|+.+. .+ ....+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 3899999984 45778999999887678888777766655444 34322222333332221 11 2246999975
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.-. ...+.+..+.|+++|.++.....
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 421 35577788999999999997643
No 369
>PRK07806 short chain dehydrogenase; Provisional
Probab=86.79 E-value=11 Score=33.10 Aligned_cols=102 Identities=19% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||-.|+ +|..+..+++.+ +.+|++++-+. ...+.....++..+ .++.++..|+.+.. +. -
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 578898885 455666666554 77888887653 23333333333333 46788899987742 10 1
Q ss_pred CccceEEccccccCcC----------C---HHHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHMP----------D---KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~----------~---~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+|+.+....... + ...+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3578877554322110 1 2356677777776677776654
No 370
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.66 E-value=7.7 Score=37.73 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......++.++++|+.+|.++.....+.. .| ..+ .++.+. -..+|+|+..-
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 478999999985 444444455558899999999876544332 12 221 222221 13579887642
Q ss_pred cCcCCHHHHHH-HHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVS-ELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~-~~~~~LkpgG~l~i~~~ 264 (371)
... .++. .....+|+|++++....
T Consensus 276 ---G~~-~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 276 ---GNK-DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ---CCH-HHHHHHHHhcCCCCCEEEEcCC
Confidence 222 3454 68889999999888653
No 371
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.65 E-value=5.7 Score=35.01 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.| |+|..+..+++.+ +.+|++++.++..+....+.++..+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57788666 4667777776655 7899999988877666655554433 46889999987642 11 14
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 372
>PRK06181 short chain dehydrogenase; Provisional
Probab=86.27 E-value=7.7 Score=34.59 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=48.6
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (371)
.+||=.| |+|..+..+++.+ +.+|++++.++...+...+.+...+ .++.++..|+.+.. + .-+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3577666 5566666666554 7899999998876665555554433 47888899987742 0 0135
Q ss_pred cceEEccccc
Q 017428 227 FDLVWSMESG 236 (371)
Q Consensus 227 fD~v~~~~~l 236 (371)
.|+|+.+...
T Consensus 79 id~vi~~ag~ 88 (263)
T PRK06181 79 IDILVNNAGI 88 (263)
T ss_pred CCEEEECCCc
Confidence 7988876544
No 373
>PRK07109 short chain dehydrogenase; Provisional
Probab=85.96 E-value=15 Score=34.35 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=.|+ +|.++..+++.+ |++|+.++-++..++...+.+...+ .++.++..|+.+.. . .-+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 567887775 455556665544 7899999999887776666665544 46888899987742 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 68988876544
No 374
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.92 E-value=8.7 Score=35.87 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=61.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCccceEEc
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~v~~ 232 (371)
++.+||=.|+ |.|..+..+++..|++|++++.+++..+.+++. .|...-+..... +..+ . ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889998886 467788888888899999999988877776542 232111111111 1111 0 011246888874
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.- . ...+..+.+.|+++|.++...
T Consensus 228 ~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 31 1 246788899999999998765
No 375
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.82 E-value=16 Score=36.49 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--C---CEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-CC-CCCccce
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF--G---AKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PF-PDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~--~---~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~-~~~~fD~ 229 (371)
|...|.|..||+|.+........ + ..++|.+..+.+...+..+..-.+.. +......+|-... .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 46789999999999887654432 2 46999999999999998875544432 1222333343221 11 2345777
Q ss_pred EEcccc------------------------ccCcCC-HHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMES------------------------GEHMPD-KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~------------------------l~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+++-- +.+..+ -..++..+..+|++||...++-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 664321 111111 2467888999999999866654
No 376
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.81 E-value=5.3 Score=35.79 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 157 ~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+++..+|+|+-.|+|+-.+.++ +-.|++||--+-..... -.+.|+....|.....-.....|-.+|..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~sL~--------dtg~v~h~r~DGfk~~P~r~~idWmVCDm-- 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQSLM--------DTGQVTHLREDGFKFRPTRSNIDWMVCDM-- 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhhhh--------cccceeeeeccCcccccCCCCCceEEeeh--
Confidence 46899999999999999999988 78999999866332221 12468888888777632346678776643
Q ss_pred cCcCCHHHHHHHHHHhcCCC
Q 017428 237 EHMPDKSKFVSELARVTAPA 256 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~Lkpg 256 (371)
++.+.++-+-+..+|..|
T Consensus 279 --VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 --VEKPARVAALIAKWLVNG 296 (358)
T ss_pred --hcCcHHHHHHHHHHHHcc
Confidence 356677777777777643
No 377
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.80 E-value=11 Score=35.82 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=59.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC-CC-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL-QQ-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~-~~-----~~~~~~fD 228 (371)
++.+||=+|+|. |..+..+++..++ .|+++|.++...+.+++ .|.. .++.. +.. +. ....+.+|
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHHHhCCCCc
Confidence 488999888753 5566677777787 79999999998887754 3321 11111 110 00 01223688
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.- .. ...+..+.+.|+++ |.+++...
T Consensus 259 ~vid~~-----g~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECI-----GN-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECC-----CC-hHHHHHHHHhhccCCCeEEEEcc
Confidence 887432 11 34677888899997 99888754
No 378
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.79 E-value=9.5 Score=34.11 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.|+ +|..+..+++.+ |++|+.+|.++..++...+.. ..++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567887774 455666666555 789999999876544433322 246888899987742 11 14
Q ss_pred ccceEEcccc
Q 017428 226 QFDLVWSMES 235 (371)
Q Consensus 226 ~fD~v~~~~~ 235 (371)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6788887654
No 379
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.75 E-value=13 Score=32.79 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=51.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|.++..+++.+ +.+|++++.++...+.....+...+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46788666 5677777777766 7899999998877666555554433 46888999987642 0 013
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
.+|+|+.+....
T Consensus 81 ~~d~vi~~a~~~ 92 (258)
T PRK12429 81 GVDILVNNAGIQ 92 (258)
T ss_pred CCCEEEECCCCC
Confidence 589888765443
No 380
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.69 E-value=12 Score=34.95 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=58.5
Q ss_pred CEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceEE
Q 017428 160 KNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLVW 231 (371)
Q Consensus 160 ~~VLDlG~--GtG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v~ 231 (371)
.+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++. .|.. .++...-.+. ......+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~---~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD---AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc---EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 78988885 567788888888787 799999998877766543 2321 1121111111 01124689887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-.- .. ..+..+.+.|+++|.++...
T Consensus 230 d~~-----g~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNV-----GG--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECC-----Cc--HHHHHHHHHhccCCEEEEEe
Confidence 432 12 23578889999999998764
No 381
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.64 E-value=1.8 Score=40.48 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-C-CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-P-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-~-~~~~~fD~v 230 (371)
++.+||-.|+|. |..+..+++..+.. +++++.++...+.+++ .+. ..++..+-.. + . .....+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 66777777777876 9999988887776643 232 1112111000 0 1 122348988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+... .....+..+.+.|+++|.++...
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 7541 11346788899999999988765
No 382
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=85.41 E-value=9.4 Score=35.18 Aligned_cols=90 Identities=18% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+|. |..+..+++..|.++++++.+++..+.+++ .|.. . ..+..+. .....+|+|+-..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~-~~~~~~~-~~~~~~d~vid~~-- 222 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE----T-VLPDEAE-SEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc----E-EeCcccc-ccCCCCCEEEECC--
Confidence 478888887642 445555666668889999999988887765 2331 1 1111111 2345689887542
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.. ...+..+.+.|+++|.+++..
T Consensus 223 ---g~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 ---GS-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---CC-hHHHHHHHHHhhcCCEEEEEc
Confidence 11 345778888999999999743
No 383
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=85.34 E-value=1.2 Score=43.32 Aligned_cols=107 Identities=17% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCccceE
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDLV 230 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD~v 230 (371)
+..+|-+|-|.|.+...+...+ ...+++|++.|.+++.|+..+.-..- .+..+...|..+. .-.+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 5678889999999998887777 58999999999999999987632211 1223333333221 1145679988
Q ss_pred Ec----cccccCcCC------HHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 231 WS----MESGEHMPD------KSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 231 ~~----~~~l~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.. .. .+.+.. .+.++..+...|.|-|.++|.-.+.+
T Consensus 375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 75 22 233321 15788999999999999988765544
No 384
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.09 E-value=18 Score=34.87 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~-~-~~~~~fD~ 229 (371)
++.+||=.|+|. |..+..+++..+++ |+.+|.++.-++.+++ .|. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 377887788763 66666777766765 5667888877777765 232 1 11111 1100 0 0 12245898
Q ss_pred EEccccccC--------cCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 230 v~~~~~l~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
|+-.-.-.. ..+....++++.+++++||.+++.-..
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 875332110 012235789999999999999997653
No 385
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.97 E-value=6.6 Score=30.43 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=55.0
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEccccc
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~~~l 236 (371)
..+|+|+|-|-=. .+..|+++ |..|+++|+.+.- .+..++++..|+.+.... -...|+|++.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~------------a~~g~~~v~DDitnP~~~iY~~A~lIYSi--- 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT------------APEGLRFVVDDITNPNISIYEGADLIYSI--- 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc------------CcccceEEEccCCCccHHHhhCccceeec---
Confidence 4599999988654 34555554 8999999998861 224689999999886421 1345777653
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.--++....+-.+.+. -|..++|....
T Consensus 78 RpppEl~~~ildva~a--Vga~l~I~pL~ 104 (129)
T COG1255 78 RPPPELQSAILDVAKA--VGAPLYIKPLT 104 (129)
T ss_pred CCCHHHHHHHHHHHHh--hCCCEEEEecC
Confidence 2223444444444443 34556665543
No 386
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.71 E-value=4.8 Score=38.49 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=55.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCccceEEccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~v~~~~ 234 (371)
++.+||=.|+|. |..+..+++..|++|++++.+++. .+.++ ..|.. .++. .+.....-..+.+|+|+-.-
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 478888888763 666777788778899999887654 33332 23431 1111 11000000012478876432
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. ...+..+.+.|++||.++....
T Consensus 251 -----G~-~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 -----SA-EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred -----Cc-HHHHHHHHHhhcCCCEEEEEcc
Confidence 11 2357788899999999988753
No 387
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.71 E-value=4.8 Score=37.82 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (371)
++.+||=.|+| .|..+..+++..+. .++++|.++...+.+++ .|.. .++...-.+. . .....+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCCCCcE
Confidence 47889988876 35666777776676 59999999887777664 3321 1111111111 0 12345898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-... . ...+..+.+.|+++|.++....
T Consensus 239 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 239 VIIAGG-----G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCEEEEecc
Confidence 874321 1 3567889999999999887653
No 388
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.67 E-value=18 Score=31.79 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=+|+ +|..+..+++.+ +.+|++++-++...+.....+.. ..++.++.+|+.+.. + ..+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567887775 455555555544 78999999998776655544433 245888999987742 1 113
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|+|+.+...
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 57988876554
No 389
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.41 E-value=1.1 Score=42.71 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=51.5
Q ss_pred cCCCCCeEEEEcCCCCC--CCCCCccceEEccccccCcCC--HHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 204 RGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 204 ~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
.++ ++++++.+++.+. ..+++++|.++....+.++++ ....++++.+.++|||++++=.....
T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 345 7899999998774 256799999999999988865 47889999999999999999765433
No 390
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=84.31 E-value=15 Score=34.80 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=58.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~-~~~~~~fD~v~ 231 (371)
++.+||=+|+|. |..+..+++..++ +|+++|.++...+.+++ .|...-+.....+. .+ . ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 488999888753 5566667777777 79999999988887754 23210011110000 00 0 01124588887
Q ss_pred ccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
-.- .. ...+..+.+.|+++ |.+++...
T Consensus 260 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECT-----GN-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECC-----CC-hHHHHHHHHhcccCCCEEEEEcC
Confidence 432 11 24677888899886 99888754
No 391
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=83.85 E-value=12 Score=36.12 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=59.0
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-----C-CC
Q 017428 158 RPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-----P-FP 223 (371)
Q Consensus 158 ~~~~VLDlG-~G-tG~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-----~-~~ 223 (371)
++.+||=+| +| .|..+..+++..+. +|+++|.++..++.+++................|..+ . . ..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 478899887 34 57778888877543 7999999999998887742110000012211112211 1 0 12
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEE
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 262 (371)
...+|+|+.... . ...+....+.++++|.+++.
T Consensus 255 g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 245888875321 1 35678889999988876654
No 392
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.48 E-value=15 Score=34.68 Aligned_cols=93 Identities=25% Similarity=0.155 Sum_probs=57.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCCc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDGQ 226 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~-~~~~~ 226 (371)
++.+||=.|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++..+-... . .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCCC
Confidence 477888888652 5556667776688 89999988877666543 3431 1111110000 0 12246
Q ss_pred cceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 227 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+|+|+-... . ...+....+.|+++|.++...
T Consensus 250 ~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG-----H-PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC-----C-hHHHHHHHHHhccCCEEEEEc
Confidence 898874321 1 245778889999999998765
No 393
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=83.48 E-value=4.9 Score=36.26 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=41.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (371)
++..++|+|||.|.++..++..+ ...++.||-...-. .+..++......+.+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 47799999999999999999876 25789999865333 23333333321124566666776653
No 394
>PRK09242 tropinone reductase; Provisional
Probab=83.43 E-value=27 Score=30.97 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=50.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
++++|=.|++ |..+..+++.+ +.+|+.++.+++.++...+.+.......++.++..|+.+.. -.-+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5788888864 44455555444 78999999988777666655544311246788899987631 0125
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68988876654
No 395
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.37 E-value=20 Score=32.75 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+++||=.|+ +|.++..+++.+ +.+|+.++.++. ..+.....++..+ .++.++..|+.+.. +. -
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 577888885 455555555544 788998887642 3333333343333 46788899987642 11 1
Q ss_pred CccceEEccccccCc----CC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~----~~----------------~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+|+.+...... .+ .-.+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 457888765443211 11 1234555566667778877765
No 396
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=83.20 E-value=8.7 Score=35.46 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|.|. |..+...+..++++|+.+|.++...+.++. .+ ..+. +..++...-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 378999999875 333444444458999999999876555443 22 2222 1112111124689998742
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+. .-+-+++.+.++||+.++-..
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEEc
Confidence 11 123456677889988766543
No 397
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.10 E-value=9.9 Score=35.21 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCCCEEEEECC-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEc
Q 017428 157 KRPKNVVDVGC-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (371)
Q Consensus 157 ~~~~~VLDlG~-GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~ 232 (371)
.|+.+|-=+|. |-|.++..+++.++.+|+++|-+..--+.+-+. .| .+.++.-.++.. --.+..|.++-
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~---LG----Ad~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS---LG----ADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh---cC----cceeEEecCCHHHHHHHHHhhcCcce
Confidence 35888777764 479999999999999999999997555544433 33 222222221211 00133343321
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEecc
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 265 (371)
.- ..+ ....+..+.+.||++|.++++...
T Consensus 253 ~v--~~~--a~~~~~~~~~~lk~~Gt~V~vg~p 281 (360)
T KOG0023|consen 253 TV--SNL--AEHALEPLLGLLKVNGTLVLVGLP 281 (360)
T ss_pred ee--eec--cccchHHHHHHhhcCCEEEEEeCc
Confidence 10 000 123467788899999999998754
No 398
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.90 E-value=21 Score=32.22 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred EEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCccce
Q 017428 161 NVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFDL 229 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~fD~ 229 (371)
.+|=-|+ |..+..+++.+ +.+|+.+|.++..++...+.++..+ .++.++..|+.+.. + ..+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 46777777766 7899999998876665555554433 36788889987742 1 1256899
Q ss_pred EEccccccCc-CCHH-----------HHHHHHHHhcCCCcEEEEE
Q 017428 230 VWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 230 v~~~~~l~~~-~~~~-----------~~l~~~~~~LkpgG~l~i~ 262 (371)
++.+..+... .++. .+++.+.+.++.+|.+++.
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8876654322 2222 2355556666666665554
No 399
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.88 E-value=16 Score=33.70 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+|. |..+..+++..+.+|+.++.++...+.+++ .|. .... +.... +...+|+++....
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~-~~~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA----DWAG-DSDDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC----cEEe-ccCcc--CCCcccEEEEcCC-
Confidence 367888787653 444555666668899999998877766643 232 1111 11111 2345888764321
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
....+..+.+.|+++|.+++..
T Consensus 235 -----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----cHHHHHHHHHHhhcCCEEEEEc
Confidence 1246888999999999999765
No 400
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.18 E-value=10 Score=35.91 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=56.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
++.+||=.|+| .|..+..+++..+.+++.++.++.....+.+. .|.. ..+...+...+.-....+|+|+-.-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~--~~i~~~~~~~~~~~~~~~D~vid~~-- 252 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD--DYLVSSDAAEMQEAADSLDYIIDTV-- 252 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc--EEecCCChHHHHHhcCCCcEEEECC--
Confidence 47788888765 36667777777788899998887655444322 3321 1111111000100012478776432
Q ss_pred cCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
.. ...+..+.+.|++||.++....
T Consensus 253 ---g~-~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 253 ---PV-FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ---Cc-hHHHHHHHHHhccCCEEEEECC
Confidence 11 2467778899999999988754
No 401
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.15 E-value=11 Score=37.56 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=63.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCccce
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDL 229 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~ 229 (371)
+++||--| |+|..+..++++. ..+++.+|.++..+...+..+...--..++.++.+|+.+.. +.+-+.|+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 56777666 6788888887766 47899999999988888777766422357899999998853 44567999
Q ss_pred EEccccccCcC
Q 017428 230 VWSMESGEHMP 240 (371)
Q Consensus 230 v~~~~~l~~~~ 240 (371)
|+-..++-|+|
T Consensus 329 VfHAAA~KHVP 339 (588)
T COG1086 329 VFHAAALKHVP 339 (588)
T ss_pred EEEhhhhccCc
Confidence 99999999985
No 402
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=82.11 E-value=4.6 Score=37.03 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=46.0
Q ss_pred CCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCccceEEcc
Q 017428 167 CGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSF----QVGDALQQP-----FPDGQFDLVWSM 233 (371)
Q Consensus 167 ~GtG~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~----~~~d~~~~~-----~~~~~fD~v~~~ 233 (371)
.|+|..+..+.+++ ..+++.+|.++..+-..+..+....-.+++.+ +.+|+.+.. +.....|+|+-.
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfHa 84 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFHA 84 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE-
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEEC
Confidence 47889999998877 36899999999998888887754322234654 488887742 555689999999
Q ss_pred ccccCcC
Q 017428 234 ESGEHMP 240 (371)
Q Consensus 234 ~~l~~~~ 240 (371)
.++-|++
T Consensus 85 AA~KhVp 91 (293)
T PF02719_consen 85 AALKHVP 91 (293)
T ss_dssp -----HH
T ss_pred hhcCCCC
Confidence 9998883
No 403
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.00 E-value=21 Score=33.75 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC-----CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-----PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~~fD 228 (371)
++.+||=.|+|. |..+..+++..++ +|+++|.+++..+.+++ .|.. .++..+- ... ....+.+|
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGVT---EFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcccccchhHHHHHHHHhCCCCC
Confidence 488999998753 5566677777777 79999999988887754 3321 1111110 000 01123578
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCC-cEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 264 (371)
+|+-.- .. ...+..+.+.+++| |.+++...
T Consensus 260 ~vid~~-----G~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECT-----GN-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECC-----CC-hHHHHHHHHHhhcCCCEEEEECc
Confidence 776431 11 34667788899996 99888764
No 404
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.95 E-value=26 Score=31.20 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=60.9
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
++.+|=.|+++ +..+..+++.+ |++|+.++.+....+..++..+..+ .+.++..|+.+.. . .-
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 67899999876 36666666655 7899888887654333333322222 3456778887642 0 12
Q ss_pred CccceEEccccccC-------cC-----CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MP-----DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~-----~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+..+.. +. ++. .+.+.+...++.+|.++...
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 56899887754422 11 112 22455666777788877654
No 405
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.79 E-value=17 Score=33.98 Aligned_cols=96 Identities=22% Similarity=0.264 Sum_probs=56.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~v~~~ 233 (371)
++.+||-.|+|. |..+..+++..+. .|++++-++...+.+++ .+...-+.....+.... ....+.+|+|+-.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~ 238 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVTDGTGVDVVLEM 238 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHcCCCCCCEEEEC
Confidence 467888777654 6667777777777 78888877766665553 23210010001111000 0123568888753
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-. ....+.++.+.|+++|.++...
T Consensus 239 ~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 239 SG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CC------CHHHHHHHHHHhccCCEEEEEc
Confidence 21 1345778889999999988764
No 406
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=81.55 E-value=8.8 Score=35.73 Aligned_cols=94 Identities=22% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~ 233 (371)
++.+||=.|+|. |..+..+++..+.+++.++.++...+.+++ .|. -.++...-.+.. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~---~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA---HHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC---cEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 377898888653 556667777778899999999887777754 232 111111111110 001347888742
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. . ....+..+.+.|+++|.++....
T Consensus 236 ~-----g-~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 A-----P-NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred C-----C-chHHHHHHHHHcccCCEEEEEec
Confidence 1 1 13467788999999999887653
No 407
>PRK06128 oxidoreductase; Provisional
Probab=81.54 E-value=23 Score=32.42 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (371)
+++||=.|+ +|.++..+++.+ |++|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 578888885 555566666555 788887765432 2233333333333 35778889987742 0 0
Q ss_pred CCccceEEccccccC----cC-----CH-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 224 DGQFDLVWSMESGEH----MP-----DK-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..|+++.+..... +. ++ -.+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899887665421 11 11 135566667778888877754
No 408
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.93 E-value=20 Score=32.02 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=60.1
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
++.+|=.|++. +..+..+++.+ |++|+.++.+....+..++...... ..++.++..|+.+.. . .-
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 67899999873 66677776665 7888888654322222222222211 246778889987742 0 12
Q ss_pred CccceEEccccccC-------cC--CHH--------------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+|+++.+..+.. +. +.+ .+.+.+...++++|.++...
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 67898876544321 11 111 12345566777788877665
No 409
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.83 E-value=7.3 Score=36.57 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=58.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||=.|+| .|..+..+++..+. .|++++.+++..+.+++ .|. .... |..+.. .....+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga----~~~i-~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGA----TIVL-DPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC----CEEE-CCCccCHHHHHHHHhCCCCC
Confidence 47888888764 35556667776677 89999999988877754 232 1111 211111 122348
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-... . ...++.+.+.|+++|.++....
T Consensus 243 d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG-----V-QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC-----C-HHHHHHHHHhccCCCEEEEEcc
Confidence 98875421 1 2467888999999999888754
No 410
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=80.44 E-value=5.3 Score=37.98 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=70.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCC---------------
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQP--------------- 221 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~--------------- 221 (371)
..++||.+|+.+.....+++.+ ..+--|+++..+.+..+..+-.+. ....+..+..+|....+
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 5789999999999999999987 455667888887777665543321 12223455555543321
Q ss_pred --------------CCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 222 --------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 222 --------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++...+|. +.++-|+.+...++......++|+|.+++.+....
T Consensus 261 ~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 261 EHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred hhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 11222332 34555666667788899999999999999886543
No 411
>PRK09072 short chain dehydrogenase; Provisional
Probab=79.87 E-value=22 Score=31.64 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=49.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 226 (371)
+.+||=.|++ |.++..+++.+ |.+|++++.++..++.....+ . .+.++.++..|+.+.. + ..+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P--YPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h--cCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5678888755 45555555444 789999999887766555444 1 2357889999987742 0 0246
Q ss_pred cceEEcccccc
Q 017428 227 FDLVWSMESGE 237 (371)
Q Consensus 227 fD~v~~~~~l~ 237 (371)
.|.|+.+....
T Consensus 81 id~lv~~ag~~ 91 (263)
T PRK09072 81 INVLINNAGVN 91 (263)
T ss_pred CCEEEECCCCC
Confidence 79888765543
No 412
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=79.85 E-value=4.6 Score=33.77 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------------C-
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------------P- 221 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------------~- 221 (371)
++.+|+=+|.|. |.-+..++..++++++.+|..+...+..+.. ...++..+..+. +
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL--------GAYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT--------TTEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc--------cCceEEEcccccccccccchhhhhHHHH
Confidence 468999999985 6677888888899999999998877665542 122232221111 1
Q ss_pred -----CC--CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEE
Q 017428 222 -----FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 222 -----~~--~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 261 (371)
|. -..+|+|+.......-..+.-+-++..+.|+||..++=
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvD 137 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVD 137 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEE
Confidence 00 13478887655443334444556677778887665543
No 413
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=79.58 E-value=3.1 Score=38.56 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=48.9
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCccceEEccc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~ 234 (371)
+|+|+-||.|.+...+.+..-..+.++|+++...+.-+.++ + .....|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF------P--EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc------c--ccccccccccccccccc-cceEEEecc
Confidence 79999999999999887763246889999999888887775 2 67888988874 443 599998743
No 414
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.27 E-value=22 Score=31.07 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=49.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||=+| |+|..+..+++.+ +.+|+.+ +-++...+.....+...+ .++.+...|+.+.. +. -
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45777777 4677777776655 7888888 888776655555444332 46889999997742 10 1
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+.+|+|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 368988876544
No 415
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.52 E-value=15 Score=36.14 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l 236 (371)
.+.+|+=+|+|. |......+..++++|+++|.++.....+.. .| +.+ .++.+. -...|+|+..-.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~leel---l~~ADIVI~atG- 318 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLEDV---VETADIFVTATG- 318 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHHHH---HhcCCEEEECCC-
Confidence 488999999986 333333344448899999988765433322 12 222 222222 145799887532
Q ss_pred cCcCCHHHHH-HHHHHhcCCCcEEEEEec
Q 017428 237 EHMPDKSKFV-SELARVTAPAGTIIIVTW 264 (371)
Q Consensus 237 ~~~~~~~~~l-~~~~~~LkpgG~l~i~~~ 264 (371)
. ..++ .+....+|||++|+-+..
T Consensus 319 ----t-~~iI~~e~~~~MKpGAiLINvGr 342 (476)
T PTZ00075 319 ----N-KDIITLEHMRRMKNNAIVGNIGH 342 (476)
T ss_pred ----c-ccccCHHHHhccCCCcEEEEcCC
Confidence 2 2234 478888999999988653
No 416
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=78.35 E-value=11 Score=27.00 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=20.3
Q ss_pred CCEEEEECCCcCh-HHHHHHHHc--CCEEEEEeCC
Q 017428 159 PKNVVDVGCGIGG-SSRYLAKKF--GAKCQGITLS 190 (371)
Q Consensus 159 ~~~VLDlG~GtG~-~~~~l~~~~--~~~v~gvD~s 190 (371)
+++||-+||.+|. ++..++..+ ++..+||-+.
T Consensus 39 pK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 39 PKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 6899999999997 455566655 6788888654
No 417
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.22 E-value=17 Score=31.93 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
..++|=.| |+|.++..+++.+ +.+|++++.++...+...+..+..+ .++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45788887 4677777766655 7899999998876655555444332 46888999997742 11 14
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
+.|+|+.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57988876554
No 418
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.11 E-value=35 Score=30.66 Aligned_cols=75 Identities=15% Similarity=-0.036 Sum_probs=45.1
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (371)
++.+|=.|++. +..+..+++.+ |++|+.++.+....+.+++.... . +.+.++..|+.+.. -.-
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-L--GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-c--CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 57888888875 35555555544 78898888764322333332222 1 24567788987742 012
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+.+|+++.+..+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568998877654
No 419
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=78.05 E-value=4.8 Score=38.21 Aligned_cols=93 Identities=16% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+|. |..+..+++..|. .++++|.++...+.+++ .+. ..++..+-.+. ......+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 478898888754 6677777777777 69999999887776654 222 11111111110 0113458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+-.-. . ...+..+.+.|+++|.++...
T Consensus 259 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTG-----V-PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCC-----C-cHHHHHHHHHhccCCEEEEeC
Confidence 74321 1 245788899999999988765
No 420
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=78.01 E-value=6.9 Score=34.10 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (371)
+.+.+++.++.- ...-|.+||.|.|+.+..+.+..-.+...++.++..+.-.+-..+. .+.+..+..+|+...
T Consensus 38 lT~KIvK~A~~~-----~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNL-----TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhcccc-----ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhc--CCcceEEecccccee
Confidence 445555555432 2678999999999999999876445778888887777666555443 235788888887653
No 421
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.01 E-value=23 Score=31.44 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=47.0
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC------CCc
Q 017428 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP------DGQ 226 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~------~~~ 226 (371)
+||=.|++ |.++..+++.+ +.+|+.++.++..++....... ..++.++.+|+.+.. +. .++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57777754 56666665544 7899999998876665544332 146889999997742 10 356
Q ss_pred cceEEccccc
Q 017428 227 FDLVWSMESG 236 (371)
Q Consensus 227 fD~v~~~~~l 236 (371)
+|+|+.+...
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 8998876554
No 422
>PRK06500 short chain dehydrogenase; Provisional
Probab=77.79 E-value=41 Score=29.40 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ +++|++++.++..++...+.+ + .++.++..|+.+.. . ..+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567777775 455666666554 789999998876554433322 2 46778888876642 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|+|+.+...
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68988765543
No 423
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=77.64 E-value=35 Score=32.06 Aligned_cols=97 Identities=20% Similarity=0.263 Sum_probs=62.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC----CCC--CCCCCCccce
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD----ALQ--QPFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d----~~~--~~~~~~~fD~ 229 (371)
++.+|.-+|||. |..++.-+...+ ..++++|+.+.-+++|++. |. ..++... +-+ ....++..|.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----GA---T~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----GA---THFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----CC---ceeecchhhhhHHHHHHHhcCCCCCE
Confidence 489999999986 556666666554 5799999999999999873 32 2333221 111 0122345565
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 267 (371)
++ ....+. ..++.....+.++|..+++-....
T Consensus 258 ~~-----e~~G~~-~~~~~al~~~~~~G~~v~iGv~~~ 289 (366)
T COG1062 258 AF-----ECVGNV-EVMRQALEATHRGGTSVIIGVAGA 289 (366)
T ss_pred EE-----EccCCH-HHHHHHHHHHhcCCeEEEEecCCC
Confidence 53 222333 378888888888999998875443
No 424
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.61 E-value=16 Score=32.41 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=52.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=.| |+|..+..+++.+ +++|+.++-+...++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57888888 5667777777665 7899999999887776666554433 46788999998742 1 014
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|.|+.+...
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 425
>PRK06182 short chain dehydrogenase; Validated
Probab=77.52 E-value=29 Score=31.15 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=46.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ +.+|++++-++..++... . .++.++.+|+.+.. + ..+
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 467887774 556666776655 789999998876554322 1 24778888987742 1 124
Q ss_pred ccceEEccccccC
Q 017428 226 QFDLVWSMESGEH 238 (371)
Q Consensus 226 ~fD~v~~~~~l~~ 238 (371)
..|+++.+.....
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 6899987765543
No 426
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.45 E-value=7.8 Score=31.68 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=31.5
Q ss_pred EECCCcC--hHHHHHHH-Hc--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCCeEEEEcCC
Q 017428 164 DVGCGIG--GSSRYLAK-KF--GAKCQGITLSPVQAQRANAL--AAARGLADKVSFQVGDA 217 (371)
Q Consensus 164 DlG~GtG--~~~~~l~~-~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~v~~~~~d~ 217 (371)
|||++.| .....+.. .. +.+|+++|++|...+..+++ +.-......+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 54444432 22 57899999999999988888 54443323355555443
No 427
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.36 E-value=29 Score=35.16 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=54.4
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~ 232 (371)
.+|+=+|| |.++..+++.+ +.+|+.+|.+++.++.+++ .....+.+|..+.. ..-+.+|.++.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 45666665 55666666654 6789999999998887764 24778999998752 12356776654
Q ss_pred cccccCcCCH--HHHHHHHHHhcCCCcEEEEE
Q 017428 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~ 262 (371)
. .+|. ...+-...+...|+..++..
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 2 1222 11232334555777766654
No 428
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.32 E-value=11 Score=35.16 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=55.9
Q ss_pred CCEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEcCCCCCCCCC
Q 017428 159 PKNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RGLA-----DKVSFQVGDALQQPFPD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~-----~~v~~~~~d~~~~~~~~ 224 (371)
-.+|-=||+|+ ..++..++.. |.+|+..|.+++.++.++.++.. .++. .++.+. .++.+ .-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~---av 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA---CV 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH---Hh
Confidence 46788999985 3345555554 89999999999988776654331 2211 122211 11111 01
Q ss_pred CccceEEccccccCcCCHHHHHHHHHHhcCCCcEE
Q 017428 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 259 (371)
...|+|+-+ +.+.+.-...+++++.+.++|+..|
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 345766543 3333333468899999999998733
No 429
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=77.21 E-value=10 Score=35.07 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=47.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-C--CCccceEEc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-P--DGQFDLVWS 232 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~--~~~fD~v~~ 232 (371)
+++||-.| |+|..+..+++.+ +.+|+++..++.............+...++.++.+|+.+... . -...|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 67888887 6788777777766 678887766654333222222212223468899999987531 0 124788776
Q ss_pred cccc
Q 017428 233 MESG 236 (371)
Q Consensus 233 ~~~l 236 (371)
+...
T Consensus 84 ~A~~ 87 (325)
T PLN02989 84 TASP 87 (325)
T ss_pred eCCC
Confidence 6543
No 430
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.20 E-value=15 Score=32.14 Aligned_cols=69 Identities=30% Similarity=0.365 Sum_probs=47.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------C
Q 017428 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----------F 222 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 222 (371)
.+..||=.||..|+.+..+++.+ |+.|++.--+ +.|.+.+.+ .++.....|+.+.. +
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~--------~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ--------FGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh--------hCCeeEEeccCChHHHHHHHHHHhhC
Confidence 36789999999999999998887 7888887554 334443322 23556666765531 4
Q ss_pred CCCccceEEccc
Q 017428 223 PDGQFDLVWSME 234 (371)
Q Consensus 223 ~~~~fD~v~~~~ 234 (371)
++++.|+.+-+.
T Consensus 78 ~~Gkld~L~NNA 89 (289)
T KOG1209|consen 78 PDGKLDLLYNNA 89 (289)
T ss_pred CCCceEEEEcCC
Confidence 678888877543
No 431
>PRK07985 oxidoreductase; Provisional
Probab=76.78 E-value=32 Score=31.47 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (371)
+.++|-.|+ +|.++..+++.+ |++|+.++.+ ....+...+.+...+ .++.++..|+.+.. -.
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578998885 455555555554 7888887654 333444444443333 46778889987742 01
Q ss_pred CCccceEEccccccC----cC-----CH-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 224 DGQFDLVWSMESGEH----MP-----DK-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~----~~-----~~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..|+++.+..... +. ++ -.+++.+.+.++.+|.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 245788876654321 11 11 134556666677788877754
No 432
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=76.70 E-value=21 Score=34.14 Aligned_cols=95 Identities=21% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-C-CC-----C-CCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-L-QQ-----P-FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~-~~-----~-~~~~~f 227 (371)
++.+||=.|+|. |..++.+++..|. .|++++.++...+.+++ .|+. .+ +...+. . +. . .....+
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~-~~-v~~~~~~~~~~~~~v~~~~~g~gv 276 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD-YV-FNPTKMRDCLSGEKVMEVTKGWGA 276 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC-EE-EcccccccccHHHHHHHhcCCCCC
Confidence 477888887753 4455666676677 79999998876655554 3331 11 111110 0 10 0 123458
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+|+... ......+..+.+.|+++|.++...
T Consensus 277 Dvvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 277 DIQVEAA-----GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CEEEECC-----CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 9887531 233456788899999999998765
No 433
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=76.30 E-value=7.2 Score=36.88 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (371)
++.+||-.|+| .|..+..+++..+.. |++++.++...+.+++ .+. ..++..+-.+. . .+...+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~---~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA---THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC---eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 47888888875 366667777777775 9999998887776643 232 11221111110 0 12356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+.... . ...+..+.+.|+++|.++....
T Consensus 255 vld~~~-----~-~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 255 AFEAVG-----R-AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EEEcCC-----C-hHHHHHHHHHhhcCCeEEEEec
Confidence 874321 1 2467888999999999987653
No 434
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=75.89 E-value=33 Score=31.93 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||-.|+| .|..+..+++..+.+ |++++-++...+.+++ .+.. .++...-.+. ......+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGAT---YVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---EEEcccccCHHHHHHHhcCCCCCCE
Confidence 36777777765 355666677776876 8888888776665544 2321 1111111110 012356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-... ....+..+.+.|+++|.++....
T Consensus 234 vld~~g------~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 234 FLEMSG------APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred EEECCC------CHHHHHHHHHhhcCCCEEEEEcc
Confidence 875411 13457888999999999887653
No 435
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=75.84 E-value=13 Score=37.96 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~ 232 (371)
.+|+=+|+ |.++..+++.+ +.+++.+|.+++.++.+++ . ....+.+|+.+.. ..-+..|++++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 45655554 55666666544 6789999999999888765 2 3668999998753 12345777665
Q ss_pred cccccCcCCHHH--HHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSK--FVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~--~l~~~~~~LkpgG~l~i~~ 263 (371)
.. +|.+. .+-...|.+.|...++.-.
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 32 33322 2333455577888877754
No 436
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.82 E-value=42 Score=31.16 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=55.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+ +.|..+..+++..++++++++.+. ..+.+++ .+. .++...-... ......+|+|
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRA----LGA----DTVILRDAPLLADAKALGGEPVDVV 247 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHh----cCC----eEEEeCCCccHHHHHhhCCCCCcEE
Confidence 4789998887 356677777887788999988654 4444432 333 1221111110 0123568988
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.... ...+..+.+.|+++|.++...
T Consensus 248 i~~~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 248 ADVVG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred EecCC-------HHHHHHHHHHhccCCEEEEec
Confidence 75322 135778899999999988654
No 437
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=75.81 E-value=19 Score=31.96 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.| |+|..+..+++.+ |.+|++++.++..++...+.+...+ .++.++..|+.+.. + .-+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 57888888 5667777776655 7899999999887766666555443 35788889987742 1 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 57888876554
No 438
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=75.70 E-value=6.9 Score=36.07 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=51.7
Q ss_pred EEEECCCcChHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccceEEcc
Q 017428 162 VVDVGCGIGGSSRYLA-KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDLVWSM 233 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~v~~~ 233 (371)
=+|||.|+-..--.+. .+++...+++|+....+..|..++.++++...+.+++....+.- .++..||++.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 4788877654333332 23367899999999999999999999998888877776442211 124558888877
Q ss_pred ccc
Q 017428 234 ESG 236 (371)
Q Consensus 234 ~~l 236 (371)
--+
T Consensus 186 PPF 188 (419)
T KOG2912|consen 186 PPF 188 (419)
T ss_pred Cch
Confidence 533
No 439
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.60 E-value=20 Score=32.25 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=49.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---------CCCc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---------PDGQ 226 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 226 (371)
+.+||=.|+ +|.++..+++.+ +.+|++++-++...+...+.....+...++.++.+|+.+..- .-+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 456888884 455566655544 789999998877666555544444444578899999977421 0145
Q ss_pred cceEEccccc
Q 017428 227 FDLVWSMESG 236 (371)
Q Consensus 227 fD~v~~~~~l 236 (371)
.|.|+.+...
T Consensus 82 id~vv~~ag~ 91 (280)
T PRK06914 82 IDLLVNNAGY 91 (280)
T ss_pred eeEEEECCcc
Confidence 7887766443
No 440
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=75.56 E-value=12 Score=31.63 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=48.4
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCC---------CCCCcc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQP---------FPDGQF 227 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~---------~~~~~f 227 (371)
..|+.+|||--.....+.... +..++-+|+ |++++.-++.+...+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 489999999988888887754 567777777 5566666666655421 123567899988632 223444
Q ss_pred ceEEccccccCcCC
Q 017428 228 DLVWSMESGEHMPD 241 (371)
Q Consensus 228 D~v~~~~~l~~~~~ 241 (371)
-++++-.++.+++.
T Consensus 159 tl~i~Egvl~Yl~~ 172 (183)
T PF04072_consen 159 TLFIAEGVLMYLSP 172 (183)
T ss_dssp EEEEEESSGGGS-H
T ss_pred eEEEEcchhhcCCH
Confidence 46666667777753
No 441
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.45 E-value=19 Score=31.87 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=48.8
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCccceEEc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~v~~ 232 (371)
.+||=.|+ +|.++..+++.+ +.+|++++-++.............+ .++.++..|+.+.. ......|+|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46887776 455566665544 7899999888776665555444444 35888889987742 11246898887
Q ss_pred cccc
Q 017428 233 MESG 236 (371)
Q Consensus 233 ~~~l 236 (371)
+...
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 6543
No 442
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.27 E-value=21 Score=31.93 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=50.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----P-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~-----~~ 225 (371)
+.+||=.|+ +|..+..+++.+ |.+|++++.++..++...+.+...+ .++.++..|+.+... . -+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888884 666666666655 7899999999877766555554433 468888899877521 0 14
Q ss_pred ccceEEcccc
Q 017428 226 QFDLVWSMES 235 (371)
Q Consensus 226 ~fD~v~~~~~ 235 (371)
.+|+|+.+..
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6898886543
No 443
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.10 E-value=48 Score=29.96 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (371)
++.||=.|++. +..+..+++.+ |++|+.++.+....+.+++.....+ .. .++..|+.+.. -..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 57888888762 45566666555 7899988887543333333333322 23 56788987742 012
Q ss_pred CccceEEccccccC-------cCC-----HH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MPD-----KS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~~-----~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+|+++.+..+.. +.+ +. .+.+.+...++.+|.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 67899887765421 111 11 23455666777778877654
No 444
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.09 E-value=48 Score=30.12 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=59.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+ +.|..+..+++..+++|+.++.++...+.+++ .|. ..+..+-.+. .. ...+|+|
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~i~~~-~~~~d~v 212 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGA----DEVVIDDGAIAEQLRAA-PGGFDKV 212 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC----cEEEecCccHHHHHHHh-CCCceEE
Confidence 3788888885 46777888888778999999999877666543 332 1111111111 12 3568888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+... .. ..+.++.+.|+++|.++....
T Consensus 213 l~~~-----~~--~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 213 LELV-----GT--ATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred EECC-----Ch--HHHHHHHHHhccCCEEEEEcc
Confidence 7432 12 457888899999999887653
No 445
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.85 E-value=29 Score=32.04 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=54.4
Q ss_pred CCEEEEE--CCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCccce
Q 017428 159 PKNVVDV--GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (371)
Q Consensus 159 ~~~VLDl--G~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (371)
+.++|=+ |+| .|..+..+++..+++|++++.++...+.+++ .|.. .++..+-.+. . .....+|+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCcE
Confidence 3444443 433 4667777788778999999999988777765 2321 1222111111 0 12245888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+-.- .. ..+....+.|+++|.++....
T Consensus 216 vid~~-----g~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 216 FFDAV-----GG--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEECC-----Cc--HHHHHHHHhhCCCCEEEEEEe
Confidence 87432 11 224556788999999988753
No 446
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=74.08 E-value=19 Score=33.53 Aligned_cols=96 Identities=22% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C--CCCCCccceEEc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~~~~~fD~v~~ 232 (371)
++.+||=.|+|. |..+..+++..+ .+|++++.++.....+++ .+...-+.....+... + ......+|+|+-
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 367777777642 445556666667 789999998877666554 2321111111111100 0 012346898874
Q ss_pred cccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
.- .. ...+..+.+.|+++|.++...
T Consensus 242 ~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 32 22 335788889999999988764
No 447
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=74.00 E-value=40 Score=31.31 Aligned_cols=94 Identities=26% Similarity=0.327 Sum_probs=55.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCccceEEcccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~v~~~~~ 235 (371)
++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++ .+.. .++...-.+. ....+.+|+|+....
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~d~v~~~~g 241 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGAD---EFIATKDPEAMKKAAGSLDLIIDTVS 241 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---EEecCcchhhhhhccCCceEEEECCC
Confidence 36777777764 3555666666668899999999887777643 2221 1111110010 011356888874321
Q ss_pred ccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 236 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
. ...+..+.+.|+++|.++....
T Consensus 242 -----~-~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 242 -----A-SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -----C-cchHHHHHHHhcCCCEEEEEec
Confidence 1 1246778899999999988653
No 448
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.89 E-value=26 Score=32.39 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=50.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (371)
+.+||=.|++ |..+..+++.+ |++|+.+.-+....+.+.+.+....-..++.++..|+.+.. -..+
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 5678877765 45555555544 78999999888766666555543321236888999987742 0125
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68988876544
No 449
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.76 E-value=24 Score=30.79 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.+||=.| |+|.++..+++.+ +.+|+.++.++...+.....+...+ .++.++..|+.+.. +. .+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46788888 4677777777665 7899999998776655444444332 47888999987642 10 13
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 67988876544
No 450
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.67 E-value=46 Score=29.46 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=59.2
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 017428 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (371)
Q Consensus 159 ~~~VLDlG~Gt-G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (371)
++.+|-.|.++ +..+..+++.+ |++|+.++.+....+.+++. . ..++.++..|+.+.. . .-
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 67889888774 55666666655 78999887764322222221 1 135778889987642 0 12
Q ss_pred CccceEEccccccC-------cC--C---H-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------MP--D---K-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~~--~---~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+.+|+++.+..+.. +. + + -.+.+.+...|+.+|.++...
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 56899887654432 11 1 1 123455566677778776654
No 451
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=73.46 E-value=15 Score=30.04 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 017428 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (371)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (371)
...|+..+........-- ..-|||+|=|.|..=-.+.+.+ +..|+.+|-.-..-. ...|+.-.++
T Consensus 11 mtaQR~~L~~a~~~v~~~------~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp--------~~~P~~~~~i 76 (160)
T PF12692_consen 11 MTAQRDCLNWAAAQVAGL------PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP--------SSTPPEEDLI 76 (160)
T ss_dssp HHHHHHHHHHHHHHTTT--------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G--------GG---GGGEE
T ss_pred HHHHHHHHHHHHHHhcCC------CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC--------CCCCchHhee
Confidence 345666666666665432 4679999999999999999988 788999996432111 1133445577
Q ss_pred EcCCCCC-C---CCCCccceEEccccccCcCCH----HHHHHHHHHhcCCCcEEEEEe
Q 017428 214 VGDALQQ-P---FPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 214 ~~d~~~~-~---~~~~~fD~v~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~ 263 (371)
++|+.+. + ......-++++-...++-..- ..+-.-+..+|.|||.++-..
T Consensus 77 lGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 77 LGDIRETLPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp ES-HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred eccHHHHhHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 7777552 2 112333344443333322111 123344567899999887644
No 452
>PRK12742 oxidoreductase; Provisional
Probab=73.41 E-value=49 Score=28.68 Aligned_cols=98 Identities=21% Similarity=0.220 Sum_probs=54.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCCccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFD 228 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD 228 (371)
+++||=.|+ +|..+..+++.+ +++|+.+.. +++..+... ... ++.++..|+.+.. + ..+.+|
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~----~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QET----GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHh----CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 578887775 555555565554 678877654 343333221 111 2556778876531 1 124589
Q ss_pred eEEccccccCcCC--------HH-----------HHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPD--------KS-----------KFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~--------~~-----------~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+++.+.......+ +. .+++++.+.++.+|.+++...
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 132 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGS 132 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 8887654432211 11 123455566777888777653
No 453
>PRK07063 short chain dehydrogenase; Provisional
Probab=73.28 E-value=25 Score=31.22 Aligned_cols=77 Identities=22% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||-.|++ |..+..+++.+ |++|+.++.++..++...+.+...+...++.++..|+.+.. + .-+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6788888865 45555555544 78999999988877766666654222346888999987742 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|.++.+...
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68988876544
No 454
>PRK06172 short chain dehydrogenase; Provisional
Probab=73.17 E-value=25 Score=31.03 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=50.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|+ +|..+..+++.+ +++|+.++-++..++...+.+...+ .++.++..|+.+.. + ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 578888885 455555555544 7899999999877766655555443 46888999987642 0 014
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
.+|+|+.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67998876543
No 455
>PRK07832 short chain dehydrogenase; Provisional
Probab=73.08 E-value=69 Score=28.64 Aligned_cols=74 Identities=19% Similarity=0.100 Sum_probs=44.3
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCcc
Q 017428 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQF 227 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~f 227 (371)
+||=.|+ +|..+..+++.+ +++|+.++.++..++...+.+...+- ..+.+...|+.+.. + ..+..
T Consensus 2 ~vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4566664 455555555544 78899999888776665554443331 22455678876531 0 12457
Q ss_pred ceEEccccc
Q 017428 228 DLVWSMESG 236 (371)
Q Consensus 228 D~v~~~~~l 236 (371)
|+|+.+...
T Consensus 80 d~lv~~ag~ 88 (272)
T PRK07832 80 DVVMNIAGI 88 (272)
T ss_pred CEEEECCCC
Confidence 988876544
No 456
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=73.00 E-value=33 Score=32.34 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=57.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||=.|+| .|..+..+++..+.. +++++.++...+.+++ .++ ..++..+-.+. ......+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 36788877764 455666677766777 9999998887776643 232 11221111111 012356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+.. +... ..+..+.+.|+++|.++...
T Consensus 260 vld~-----vg~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEA-----LGKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEe-----CCCH-HHHHHHHHHHhcCCEEEEEc
Confidence 8743 1221 36788899999999988764
No 457
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=72.92 E-value=36 Score=31.75 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=58.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCccc
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (371)
++.+||-.|+| .|..+..+++..+. .|+.++.++...+.+++ .|. ..+. +..+.. ...+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~----~~~~-~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA----DVVV-NGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC----cEEe-cCCCccHHHHHHHHhCCCCc
Confidence 36788888765 35566677777677 79999999888777644 232 1111 111111 1122588
Q ss_pred eEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+.... . ...+..+.+.|+++|.++....
T Consensus 246 ~vid~~g-----~-~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 246 AVIDFVN-----N-SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEEECCC-----C-HHHHHHHHHHhhcCCeEEEECC
Confidence 8874321 1 2468888999999999987653
No 458
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.59 E-value=61 Score=28.65 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC----HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS----PVQAQRANALAAARGLADKVSFQVGDALQQP-----F---- 222 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 222 (371)
+.+||=.|+ +|..+..+++.+ +.+|+.++.+ ....+...+.+...+ .++.++..|+.+.. +
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 567888885 555666666655 6776666543 233333333333322 36888899987642 0
Q ss_pred -CCCccceEEccccccC------cC--CHH-----------HHHHHHHHhcCCCcEEEEE
Q 017428 223 -PDGQFDLVWSMESGEH------MP--DKS-----------KFVSELARVTAPAGTIIIV 262 (371)
Q Consensus 223 -~~~~fD~v~~~~~l~~------~~--~~~-----------~~l~~~~~~LkpgG~l~i~ 262 (371)
..+..|+++.+..... .. ++. .+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 1246898887655421 11 111 2356666677777776654
No 459
>PRK08251 short chain dehydrogenase; Provisional
Probab=72.54 E-value=27 Score=30.66 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=51.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+.+||=.| |+|.++..+++.+ +.+|+.++-++...+.....+.......++.+...|+.+.. . .-+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678777 5677777777666 78999999888777665554443322246888999988752 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|.|+.+..+
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 57888876544
No 460
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=72.14 E-value=19 Score=27.01 Aligned_cols=74 Identities=23% Similarity=0.298 Sum_probs=44.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 238 (371)
..+|| +-||+|..+..++.+ .++.++..|++ +++...+..+..-....||+|+..
T Consensus 3 ~~~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~----- 57 (95)
T TIGR00853 3 ETNIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLA----- 57 (95)
T ss_pred ccEEE-EECCCchhHHHHHHH-----------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEEC-----
Confidence 35677 679999776666544 34444556663 666776665543223568998876
Q ss_pred cCCHHHHHHHHHHhcCCCcE
Q 017428 239 MPDKSKFVSELARVTAPAGT 258 (371)
Q Consensus 239 ~~~~~~~l~~~~~~LkpgG~ 258 (371)
+.....+.++...+.+-|.
T Consensus 58 -pqi~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 58 -PQVAYMLPDLKKETDKKGI 76 (95)
T ss_pred -chHHHHHHHHHHHhhhcCC
Confidence 4444556667766655443
No 461
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=71.90 E-value=54 Score=31.43 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=60.0
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCccceEEccccccCc
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 239 (371)
+||=++=.-|.++..++.. +. +.+--|-..-...+.+++.++++.. +++. +... +++ +.+|+|+...- -..
T Consensus 47 ~~~i~nd~fGal~~~l~~~-~~--~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~-~~~-~~~d~vl~~~P-K~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEH-KP--YSIGDSYISELATRENLRLNGIDESSVKFL--DSTA-DYP-QQPGVVLIKVP-KTL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhC-CC--CeeehHHHHHHHHHHHHHHcCCCcccceee--cccc-ccc-CCCCEEEEEeC-CCH
Confidence 7999999999999999853 32 3332222233445666777777543 4443 3222 233 55898876421 111
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 240 PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 240 ~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
...+..+..+.++|.||+.+++..-
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 2335678888899999999887653
No 462
>PRK06949 short chain dehydrogenase; Provisional
Probab=71.80 E-value=31 Score=30.47 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|..+..+++.+ +.+|++++.+++.++.....+...+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 67888888 5666666666655 7899999999887766655554333 46788888987631 0 124
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 57888876554
No 463
>PRK12937 short chain dehydrogenase; Provisional
Probab=71.76 E-value=68 Score=27.92 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=58.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||=.|+ +|.++..+++.+ +.+++.+..+ +...+...+.+...+ .++.++..|+.+.. +. .
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAF 81 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567888886 466666666655 6777766543 322333333333333 46888899987642 11 1
Q ss_pred CccceEEccccccCc------C--CH-----------HHHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEHM------P--DK-----------SKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~~------~--~~-----------~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+|+.+...... + ++ ..+++.+.+.++.+|.++...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 467888876543221 0 11 133455666677788877765
No 464
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.75 E-value=71 Score=28.17 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=47.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (371)
+..+|=.| |+|..+..+++.+ +++|+.++.++. .++...+.+...+ .++.++..|+.+.. + .-
T Consensus 8 ~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 8 GQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56788777 5556667766655 789999987643 3333333443333 46788889987642 0 12
Q ss_pred CccceEEcccccc
Q 017428 225 GQFDLVWSMESGE 237 (371)
Q Consensus 225 ~~fD~v~~~~~l~ 237 (371)
+..|.++.+....
T Consensus 85 g~id~li~~ag~~ 97 (254)
T PRK06114 85 GALTLAVNAAGIA 97 (254)
T ss_pred CCCCEEEECCCCC
Confidence 5679888776543
No 465
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=71.73 E-value=37 Score=31.60 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=58.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|+|. |..+..+++..+. +|++++.++...+.+++ .|.. .++ +..+.. .....+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~---~~~--~~~~~~~~~~~~~~~~~~~~ 233 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT---RAV--NVAKEDLRDVMAELGMTEGF 233 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---EEe--cCccccHHHHHHHhcCCCCC
Confidence 467888777754 6667777777777 68888888877666554 2321 111 221111 123568
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
|+|+-... ....+..+.+.|+++|.++....
T Consensus 234 d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 234 DVGLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred CEEEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 88875321 13467888999999999998764
No 466
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.69 E-value=17 Score=33.25 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=57.6
Q ss_pred CEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------CCC---------CCeEEEEcCCCCCC
Q 017428 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------GLA---------DKVSFQVGDALQQP 221 (371)
Q Consensus 160 ~~VLDlG~Gt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~---------~~v~~~~~d~~~~~ 221 (371)
.+|-=||+|+ +.++..++.. |..|+..|.+++.++.+.+++.+. |.- .+++ ...|+..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH--
Confidence 4788899985 3344444443 899999999999998877664322 110 1122 1223211
Q ss_pred CCCCccceEEccccccCcCCHHHHHHHHHHhc-CCCcEEEEEe
Q 017428 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVT 263 (371)
Q Consensus 222 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~~ 263 (371)
-...|+|+-. +.+...-...++..+.+.+ +|+..+.-.+
T Consensus 82 --~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 --FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred --hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1345777644 3333333467888888888 6766655433
No 467
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=71.27 E-value=13 Score=34.02 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~ 203 (371)
+.+|+-+|+|.-....++++. .++|..||+++..+...+-+++.
T Consensus 64 ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 64 GHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 789999999987777777765 88999999999999887776654
No 468
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=71.25 E-value=8.2 Score=35.35 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=41.0
Q ss_pred CCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCcCccccChHHHHHHHHHhhccCCCCCCCHHHHH
Q 017428 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (371)
.+.||+|+......|+-.+. +.++++|+|.|++-..-+- . .+.. ..... -.+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfm--v----dLrK---Eq~~~-----------F~~kv~ 274 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFM--V----DLRK---EQLQE-----------FVKKVK 274 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhh--e----eCCH---HHHHH-----------HHHHHH
Confidence 46799999876655543332 7778899998888542110 0 0111 11110 256788
Q ss_pred HHHHhCCCceEE
Q 017428 304 KLLQSLSLEDIK 315 (371)
Q Consensus 304 ~ll~~aGF~~v~ 315 (371)
++++++||+.+.
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998653
No 469
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=71.05 E-value=58 Score=29.81 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=56.7
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCcc
Q 017428 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (371)
Q Consensus 158 ~~~~VLDlG~G--tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (371)
++.+||-.|++ .|..+..++...+.+++.++.++...+.++. .+. ...+ +..+.. .....+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~--~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA--DYVI---DYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CeEE---ecCChHHHHHHHHHhCCCCC
Confidence 37788888875 4556666666668899999998877666543 222 1111 221111 123468
Q ss_pred ceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 228 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+++.... ...+..+.+.|+++|.++...
T Consensus 237 d~~i~~~g-------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 237 DVVVEHVG-------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred cEEEECCc-------HHHHHHHHHHhhcCCEEEEEe
Confidence 88875432 134677788999999988764
No 470
>PRK06194 hypothetical protein; Provisional
Probab=70.71 E-value=26 Score=31.59 Aligned_cols=76 Identities=21% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|..+..+++.+ |++|+.+|.++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788666 5566666666555 7899999998776665555444333 36788999987642 0 013
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+|+.+....
T Consensus 83 ~id~vi~~Ag~~ 94 (287)
T PRK06194 83 AVHLLFNNAGVG 94 (287)
T ss_pred CCCEEEECCCCC
Confidence 579988776553
No 471
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=70.33 E-value=26 Score=33.09 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--CCCC-C-CCCCCccceEE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~fD~v~ 231 (371)
++.+||=.|+|. |..+..+++..+. .|++++.++...+.+++ .|...-+..... +... + ....+.+|+|+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vi 258 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMTDGGVDYAF 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHhCCCCcEEE
Confidence 478888887753 5555666776676 48889988888777744 232111111111 1000 0 01124688887
Q ss_pred ccccccCcCCHHHHHHHHHHhcC-CCcEEEEEec
Q 017428 232 SMESGEHMPDKSKFVSELARVTA-PAGTIIIVTW 264 (371)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 264 (371)
-.. .. ...+..+.+.|+ ++|.++....
T Consensus 259 d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 259 EVI-----GS-ADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred ECC-----CC-HHHHHHHHHHhccCCCEEEEEec
Confidence 432 11 346778889999 9999988653
No 472
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.31 E-value=62 Score=26.92 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CC---CCccceEEccc
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FP---DGQFDLVWSME 234 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~---~~~fD~v~~~~ 234 (371)
..+|+-|||=+-...+.-....+.++...|++..... .+++ .|..-|..... ++ .++||+|++-=
T Consensus 26 ~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~----------~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 26 DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQ----------FGGD-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHh----------cCCc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 6899999987744433331112568999999875432 2234 57777776531 11 57899999865
Q ss_pred cccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 235 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-+..-+-.......+.-++|+++.+++..
T Consensus 95 PFl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 95 PFLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CCCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 44211223455566666778888888865
No 473
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.17 E-value=35 Score=30.06 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=48.8
Q ss_pred CCCEEEEECCCcChHHH--HHHHHcCCEEEEE--eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEcc
Q 017428 158 RPKNVVDVGCGIGGSSR--YLAKKFGAKCQGI--TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (371)
Q Consensus 158 ~~~~VLDlG~GtG~~~~--~l~~~~~~~v~gv--D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 233 (371)
++.+||=||+|.-..-. .|.+ .+++|+.| +++++..+.++. ++++++..++....+ ..+++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~--------~~i~~~~r~~~~~dl--~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLK-KGCYVYILSKKFSKEFLDLKKY--------GNLKLIKGNYDKEFI--KDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCCCHHHHHHHhC--------CCEEEEeCCCChHHh--CCCcEEEEC
Confidence 37899999988754432 2223 37777776 677776554431 468888877654333 346777664
Q ss_pred ccccCcCCHHHHHHHHHHhcCCCcE
Q 017428 234 ESGEHMPDKSKFVSELARVTAPAGT 258 (371)
Q Consensus 234 ~~l~~~~~~~~~l~~~~~~LkpgG~ 258 (371)
.+-..+-+.+....+.-|.
T Consensus 93 ------TdD~~vN~~I~~~a~~~~~ 111 (223)
T PRK05562 93 ------TDDEKLNNKIRKHCDRLYK 111 (223)
T ss_pred ------CCCHHHHHHHHHHHHHcCC
Confidence 2333444455555544343
No 474
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.03 E-value=35 Score=31.00 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred EEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHcCC-C--------CCeEEEEcCCCCCCC
Q 017428 161 NVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALA-------AARGL-A--------DKVSFQVGDALQQPF 222 (371)
Q Consensus 161 ~VLDlG~Gt--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~~~ 222 (371)
+|.=||+|. +.++..++.. +.+|+++|.+++.++.+++++ .+.+. . .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577788874 4445555544 779999999999987655332 22221 1 12322 223221
Q ss_pred CCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEE
Q 017428 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 260 (371)
-...|+|+.. +...+.-...+++++.+.++|+..|.
T Consensus 80 -~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 1446877754 22222223588999999999887663
No 475
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=70.02 E-value=19 Score=27.28 Aligned_cols=75 Identities=29% Similarity=0.352 Sum_probs=47.2
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCccceEEccccccCcC
Q 017428 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 240 (371)
+|| +-||.|..+..++++ .++.++..|+ .+++......+.+..-+.+|+|+.. +
T Consensus 2 ~Il-l~C~~GaSSs~la~k-----------------m~~~a~~~gi--~~~i~a~~~~e~~~~~~~~Dvill~------P 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA-----------------LNKGAKERGV--PLEAAAGAYGSHYDMIPDYDLVILA------P 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH-----------------HHHHHHHCCC--cEEEEEeeHHHHHHhccCCCEEEEc------C
Confidence 345 567888666555554 3444455666 3666666666554334568988765 4
Q ss_pred CHHHHHHHHHHhcCCCcEEEE
Q 017428 241 DKSKFVSELARVTAPAGTIII 261 (371)
Q Consensus 241 ~~~~~l~~~~~~LkpgG~l~i 261 (371)
...-.+.++.+.+.+-|.-+.
T Consensus 56 Qv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 56 QMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred hHHHHHHHHHHHhhhcCCCEE
Confidence 555667788888888776444
No 476
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.89 E-value=73 Score=28.29 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=60.6
Q ss_pred CCEEEEECCC-cChHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------C
Q 017428 159 PKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDALQQP----------F 222 (371)
Q Consensus 159 ~~~VLDlG~G-tG~~~~~l~~~~---~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 222 (371)
++++|=.|+| ++..+..+++.+ +++|+.++.+. +.++...+. +..++.++..|+.+.. -
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR-----LPEPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh-----cCCCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 5789999985 566766666655 78999888653 333332221 1235678888987742 0
Q ss_pred CCCccceEEccccccC-------cC--CHH--------------HHHHHHHHhcCCCcEEEEEe
Q 017428 223 PDGQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 223 ~~~~fD~v~~~~~l~~-------~~--~~~--------------~~l~~~~~~LkpgG~l~i~~ 263 (371)
..+.+|+++.+..+.. +. +++ .+.+.+...++++|.++...
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1267899887654421 11 111 23455667777888877654
No 477
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=69.74 E-value=76 Score=28.64 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCccce
Q 017428 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~--GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (371)
++.+||-.|| +.|..+..+++..+..|++++.++...+.+++ .+.. .++..+-.+.. .....+|+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGAD---HVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCc---eeeecCCccHHHHHHHHcCCCCcEE
Confidence 4789999997 35666667777668899999999887776643 2321 11111111110 12345888
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
++.+.. ...+..+.+.++++|.++....
T Consensus 212 v~~~~g-------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 212 VYDPVG-------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred EEECcc-------HHHHHHHHHhhccCCEEEEEcc
Confidence 775321 1345677888999999887653
No 478
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.74 E-value=9.4 Score=35.58 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred EEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCccceEEcc
Q 017428 162 VVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (371)
Q Consensus 162 VLDlG~GtG~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~v~~~ 233 (371)
|+|+-||.|.+..-+.+. |.+ +.++|+++...+.-+.++ + + .+...|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~-----~-~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANF-----G-N-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhC-----C-C-CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999888765 665 457999999888777654 2 2 3456777765311 1347888764
No 479
>PRK07890 short chain dehydrogenase; Provisional
Probab=69.30 E-value=29 Score=30.61 Aligned_cols=75 Identities=20% Similarity=0.089 Sum_probs=50.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.|+ +|.++..+++.+ |.+|++++.++.-.+...+.+...+ .++.++..|+.+.. + .-+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 578887775 555556555544 7899999998877666655554433 46888999987642 0 014
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68988876543
No 480
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=69.29 E-value=29 Score=30.71 Aligned_cols=76 Identities=20% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.| |+|..+..+++.+ +.+|+.++.++...+...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788665 5566666666555 7899999999877766666655443 46788899987742 0 014
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
+.|+|+.+....
T Consensus 84 ~~d~vi~~ag~~ 95 (262)
T PRK13394 84 SVDILVSNAGIQ 95 (262)
T ss_pred CCCEEEECCccC
Confidence 578887765543
No 481
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.15 E-value=44 Score=30.51 Aligned_cols=75 Identities=25% Similarity=0.197 Sum_probs=47.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+.+||=.|++ |.++..+++.+ |++|+.++.++..++...+.+. ....+..+..|+.+.. + ..+
T Consensus 9 gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 9 GKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 6788877754 55555555554 7899999998876665544332 1234555668887642 0 125
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+|+.+..+.
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 689998876553
No 482
>PRK07102 short chain dehydrogenase; Provisional
Probab=69.15 E-value=32 Score=30.17 Aligned_cols=73 Identities=23% Similarity=0.198 Sum_probs=47.2
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----C--CCccce
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----P--DGQFDL 229 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~~fD~ 229 (371)
++||=.| |+|.++..+++.+ |.+|++++.++.-.+...+.....+ ..++.++..|+.+..- . ...+|+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 3678777 5567777766655 7899999998876554444333322 2478899999887520 0 134788
Q ss_pred EEccc
Q 017428 230 VWSME 234 (371)
Q Consensus 230 v~~~~ 234 (371)
++.+.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 88653
No 483
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=69.08 E-value=61 Score=30.03 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCccce
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (371)
++.+||=.|+| .|..+..+++..+. +|++++.++...+.+++ .|. ..+..+-.+. -.+...+|+
T Consensus 167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCCCCCE
Confidence 47788887754 24455566666675 79999888766655543 232 1122111111 012356898
Q ss_pred EEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 230 v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
|+-.. .. ...+..+.+.|+++|.++...
T Consensus 239 vid~~-----~~-~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 239 VLEAV-----GG-AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEECC-----CC-HHHHHHHHHhcccCCEEEEEC
Confidence 87532 11 246788899999999988765
No 484
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.84 E-value=25 Score=32.15 Aligned_cols=57 Identities=21% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 017428 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (371)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~VLDlG~GtG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 204 (371)
++.+.+... -. ++..|||.=+|+|..+...... +..++|+|+++..++.+.+++...
T Consensus 211 l~~r~i~~~-s~-----~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 211 LIERLIRDY-SF-----PGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHhc-CC-----CCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHhh
Confidence 455555542 22 4899999999999988776654 889999999999999999998754
No 485
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=68.83 E-value=11 Score=35.01 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=56.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCccceE
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~v 230 (371)
++.+||=.|+|. |..+..+++..+ .+|++++-++...+.+++ .+.. .++..+-. .+ . .+...+|+|
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~dvv 239 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGADAV 239 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCCCEE
Confidence 367888888553 445555666666 789999988877665543 3321 11111110 00 0 123458888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+-.-. . ...+..+.+.|+++|.++....
T Consensus 240 ld~~g-----~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 240 IDFVG-----S-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred EEcCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 75321 1 3467888999999999997653
No 486
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=68.74 E-value=63 Score=30.64 Aligned_cols=97 Identities=25% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCccc
Q 017428 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFD 228 (371)
Q Consensus 158 ~~~~VLDlG~Gt-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD 228 (371)
++.+||=.|+|. |..+..+++..+. +|+++|.++...+.+++ .|. ..+ +..+. .+....+|
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~g~----~~v--~~~~~~~~~~i~~~~~~~~d 245 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES----IGA----IPI--DFSDGDPVEQILGLEPGGVD 245 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC----eEe--ccCcccHHHHHHHhhCCCCC
Confidence 377888788763 5566667776675 79999998877776654 221 111 22111 01224588
Q ss_pred eEEccccccCc-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 017428 229 LVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (371)
Q Consensus 229 ~v~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~ 264 (371)
+|+-...-... .+....+.++.++|+++|.+.+...
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 88754321110 1233568889999999999976654
No 487
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.28 E-value=82 Score=27.51 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=46.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (371)
+.+||=.|+ +|..+..+++.+ +.+|+.+ +-+....+...+.++..+ .++.++.+|+.+.. +. .
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567887775 566677776665 6777664 445555544444444433 46888889987642 11 1
Q ss_pred CccceEEccccc
Q 017428 225 GQFDLVWSMESG 236 (371)
Q Consensus 225 ~~fD~v~~~~~l 236 (371)
+..|+|+.+...
T Consensus 81 ~~id~vi~~ag~ 92 (250)
T PRK08063 81 GRLDVFVNNAAS 92 (250)
T ss_pred CCCCEEEECCCC
Confidence 357988876543
No 488
>PRK09186 flagellin modification protein A; Provisional
Probab=68.04 E-value=34 Score=30.13 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+++||=.|++ |..+..+++.+ +.+|++++.++..++.+...+....-...+.++.+|+.+.. +. -+
T Consensus 4 ~k~vlItGas-~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGAG-GLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5678888864 55666666655 78999999888777666555433211134667788987742 11 13
Q ss_pred ccceEEccc
Q 017428 226 QFDLVWSME 234 (371)
Q Consensus 226 ~fD~v~~~~ 234 (371)
..|+|+.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479888664
No 489
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.04 E-value=32 Score=31.51 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=53.5
Q ss_pred CEEEEECCCc-C-hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEcCCC
Q 017428 160 KNVVDVGCGI-G-GSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR----------GL---------ADKVSFQVGDAL 218 (371)
Q Consensus 160 ~~VLDlG~Gt-G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 218 (371)
.+|.=||+|. | .++..++.. +.+|+.+|.+++.++.+++++... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688888885 2 233344443 789999999999998776544321 11 0112221 1221
Q ss_pred CCCCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEE
Q 017428 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (371)
Q Consensus 219 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 260 (371)
. -...|+|+..- .........+++++.+.++|+..++
T Consensus 82 ~----~~~aDlVieav-~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAV-PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcC-cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 13468777542 2222224678888888888876554
No 490
>PRK08177 short chain dehydrogenase; Provisional
Probab=67.89 E-value=42 Score=29.00 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=41.8
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCccce
Q 017428 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQFDL 229 (371)
Q Consensus 161 ~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD~ 229 (371)
+||=.|+ +|..+..+++.+ |.+|++++.++...+..++ . .++.+...|+.+.. +..+.+|+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~----~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA----L---PGVHIEKLDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh----c---cccceEEcCCCCHHHHHHHHHHhhcCCCCE
Confidence 4666664 566666665555 7899999988765443322 1 24667778876642 22346898
Q ss_pred EEcccc
Q 017428 230 VWSMES 235 (371)
Q Consensus 230 v~~~~~ 235 (371)
|+.+..
T Consensus 75 vi~~ag 80 (225)
T PRK08177 75 LFVNAG 80 (225)
T ss_pred EEEcCc
Confidence 886643
No 491
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.87 E-value=31 Score=30.46 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (371)
+++||=.|++. ..+..+++.+ |.+|+.++.++..++...+.+...+ .++.++..|+.+.. + .-+
T Consensus 9 ~k~vlVtGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 9 GKRALITGAST-GIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67889888654 4455555544 7899999999887776666555443 46788889987642 0 114
Q ss_pred ccceEEcccccc
Q 017428 226 QFDLVWSMESGE 237 (371)
Q Consensus 226 ~fD~v~~~~~l~ 237 (371)
..|+++.+....
T Consensus 86 ~id~lv~~ag~~ 97 (253)
T PRK05867 86 GIDIAVCNAGII 97 (253)
T ss_pred CCCEEEECCCCC
Confidence 789888765543
No 492
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.83 E-value=39 Score=29.56 Aligned_cols=74 Identities=26% Similarity=0.248 Sum_probs=49.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (371)
+.++|=.|+ +|..+..+++.+ +.+|+.++.++..++.+.+.+...+ .++.++..|+.+.. +. .+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 678998885 455555555544 7899999999876666555554433 46888889986631 00 14
Q ss_pred ccceEEcccc
Q 017428 226 QFDLVWSMES 235 (371)
Q Consensus 226 ~fD~v~~~~~ 235 (371)
.+|+|+.+..
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6798887654
No 493
>PRK07677 short chain dehydrogenase; Provisional
Probab=67.82 E-value=35 Score=30.14 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=47.4
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (371)
+++|=.|++. ..+..+++.+ |.+|++++.++...+...+.+...+ .++.++..|+.+.. + .-+.
T Consensus 2 k~~lItG~s~-giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSS-GMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4677777644 4555555544 7899999998877766665554433 46888999987642 0 1146
Q ss_pred cceEEcccc
Q 017428 227 FDLVWSMES 235 (371)
Q Consensus 227 fD~v~~~~~ 235 (371)
.|.|+.+..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 798886543
No 494
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=67.81 E-value=37 Score=30.02 Aligned_cols=75 Identities=15% Similarity=0.026 Sum_probs=47.2
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCc
Q 017428 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (371)
Q Consensus 160 ~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (371)
.+||=.|+ +|..+..+++.+ +++|+.+|.+....+.....+....-..++.++..|+.+.. + ..+.
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46888884 566666665554 78999999987766554444332211135888899987642 0 1146
Q ss_pred cceEEcccc
Q 017428 227 FDLVWSMES 235 (371)
Q Consensus 227 fD~v~~~~~ 235 (371)
.|.|+.+..
T Consensus 82 id~vv~~ag 90 (259)
T PRK12384 82 VDLLVYNAG 90 (259)
T ss_pred CCEEEECCC
Confidence 788877654
No 495
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=67.74 E-value=96 Score=28.12 Aligned_cols=79 Identities=22% Similarity=0.115 Sum_probs=56.1
Q ss_pred CCEEEEECCCcChH---HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC----------CC-
Q 017428 159 PKNVVDVGCGIGGS---SRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP----------FP- 223 (371)
Q Consensus 159 ~~~VLDlG~GtG~~---~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~----------~~- 223 (371)
++.+|--|.+.|.- +..+++. |++|+..+.+++.++.........+. ..++.....|+.+.+ ..
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 67788888777653 3334443 89999999999998887777665554 356888999987642 11
Q ss_pred CCccceEEccccccC
Q 017428 224 DGQFDLVWSMESGEH 238 (371)
Q Consensus 224 ~~~fD~v~~~~~l~~ 238 (371)
.+..|+++.+.....
T Consensus 87 ~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 87 FGKIDILVNNAGALG 101 (270)
T ss_pred CCCCCEEEEcCCcCC
Confidence 477999887765544
No 496
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=67.70 E-value=70 Score=26.47 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=50.1
Q ss_pred CCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C--CCCccceEEccccccCcC
Q 017428 167 CGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F--PDGQFDLVWSMESGEHMP 240 (371)
Q Consensus 167 ~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~~fD~v~~~~~l~~~~ 240 (371)
.|||..+..+++.+ +.+|+++--++..++. ..+++++.+|+.+.. + .-..+|.|+....-..-
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~- 73 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK- 73 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence 36888888888766 7899999888765443 258999999998752 1 11358988876533221
Q ss_pred CHHHHHHHHHHhcCC
Q 017428 241 DKSKFVSELARVTAP 255 (371)
Q Consensus 241 ~~~~~l~~~~~~Lkp 255 (371)
+ ....+.+.+.++.
T Consensus 74 ~-~~~~~~~~~a~~~ 87 (183)
T PF13460_consen 74 D-VDAAKNIIEAAKK 87 (183)
T ss_dssp H-HHHHHHHHHHHHH
T ss_pred c-ccccccccccccc
Confidence 2 4444455555433
No 497
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=67.63 E-value=30 Score=32.20 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCCccceE
Q 017428 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQ-----PFPDGQFDLV 230 (371)
Q Consensus 158 ~~~~VLDlG~G-tG~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-----~~~~~~fD~v 230 (371)
++.+||=.|+| .|..+..+++..+.+|++++.+++..+.+++ .|+. .++...- .+. .+..+.+|+|
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~~~~d~v 237 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTGGGAHVS 237 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhCCCCCEE
Confidence 36788888864 3556666777768899999999888777643 2321 1221111 111 0112268888
Q ss_pred EccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..- .. ...+..+.+.|+++|.++...
T Consensus 238 i~~~-----g~-~~~~~~~~~~l~~~g~~i~~g 264 (345)
T cd08260 238 VDAL-----GI-PETCRNSVASLRKRGRHVQVG 264 (345)
T ss_pred EEcC-----CC-HHHHHHHHHHhhcCCEEEEeC
Confidence 7541 11 346778899999999988764
No 498
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.61 E-value=41 Score=35.24 Aligned_cols=99 Identities=21% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCEEEEECCCcCh--HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------C-C--------CCCeEEEEcCCCCC
Q 017428 159 PKNVVDVGCGIGG--SSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------G-L--------ADKVSFQVGDALQQ 220 (371)
Q Consensus 159 ~~~VLDlG~GtG~--~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~-~--------~~~v~~~~~d~~~~ 220 (371)
-.+|.=||+|+=. ++..++...|..|+.+|.+++.++.+..++... + + ..++++. .|+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 4679999999833 444455344899999999999998876654332 1 1 1234332 22211
Q ss_pred CCCCCccceEEccccccCcCCHHHHHHHHHHhcCCCcEEEEEe
Q 017428 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 221 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 263 (371)
-...|+|+=. +.+.+.-...+++++.++++|+..|.-.+
T Consensus 387 ---~~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 387 ---FKHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred ---hccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1346766533 44444445789999999999997776544
No 499
>PRK07062 short chain dehydrogenase; Provisional
Probab=67.61 E-value=36 Score=30.31 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=50.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 017428 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (371)
Q Consensus 159 ~~~VLDlG~GtG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (371)
+..+|=.|++. .++..+++.+ +++|+.++.++..++.+.+.+.......++.++..|+.+.. . .-+
T Consensus 8 ~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 57788888654 4555555554 78999999998777666555544322235778888987742 0 125
Q ss_pred ccceEEccccc
Q 017428 226 QFDLVWSMESG 236 (371)
Q Consensus 226 ~fD~v~~~~~l 236 (371)
..|+++.+...
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 68988876554
No 500
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.60 E-value=81 Score=28.38 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=59.2
Q ss_pred CCEEEEECCC-cChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 017428 159 PKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (371)
Q Consensus 159 ~~~VLDlG~G-tG~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (371)
++.+|=.|++ ++..+..+++.+ |++|+.+.-+....+.+++..+..+ ...++..|+.+.. -.-
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHhc
Confidence 5678888886 466666666665 7888877655433333333333322 3456788887642 112
Q ss_pred CccceEEccccccC-------c---C--CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 017428 225 GQFDLVWSMESGEH-------M---P--DKS-----------KFVSELARVTAPAGTIIIVT 263 (371)
Q Consensus 225 ~~fD~v~~~~~l~~-------~---~--~~~-----------~~l~~~~~~LkpgG~l~i~~ 263 (371)
+..|+++.+..+.. + + ++. .+.+.+...++.+|.++...
T Consensus 87 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 87 GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 56899887754321 1 0 111 33445566677778877665
Done!