BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017434
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2
Angstroms Resolution
Length = 370
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/368 (83%), Positives = 334/368 (90%), Gaps = 2/368 (0%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 3 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 63 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 182
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAEDA LA
Sbjct: 183 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 242
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+Q+GAAGIIVSNHGARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 243 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 302
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTP 365
A+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI WD P
Sbjct: 303 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 362
Query: 366 G--AVARL 371
AVARL
Sbjct: 363 SSRAVARL 370
>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
pdb|1GYL|B Chain B, Involvement Of Tyr24 And Trp108 In Substrate Binding And
Substrate Specificity Of Glycolate Oxidase
Length = 369
Score = 634 bits (1634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/368 (83%), Positives = 334/368 (90%), Gaps = 2/368 (0%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYD+YASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDFYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAEDA LA
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+Q+GAAGIIVSNHGARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTP 365
A+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI WD P
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGP 361
Query: 366 G--AVARL 371
AVARL
Sbjct: 362 SSRAVARL 369
>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With
Bound Active- Site Inhibitors
pdb|1AL8|A Chain A, Three-Dimensional Structure Of Glycolate Oxidase With
Bound Active- Site Inhibitors
Length = 359
Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/358 (84%), Positives = 328/358 (91%)
Query: 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMT 65
EITNV EYEA+AK+KLPKMVYDYYASGAEDQWTL ENRNAFSRILFRPRIL DV+ IDMT
Sbjct: 2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61
Query: 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP 125
TT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STGP
Sbjct: 62 TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
GIRFFQLYV K RNV AQLV+RAERAGFKAIALTVDTPRLGRREADIKNRFVLPP LTLK
Sbjct: 122 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
N+EG+ +GKMDK +DSGL+SYVA QIDRSL+WKDV WLQTITSLPILVKGV+TAEDA LA
Sbjct: 182 NFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA 241
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+Q+GAAGIIVSNHGARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALG
Sbjct: 242 VQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALG 301
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWD 363
A+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+HI WD
Sbjct: 302 AAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In
Complex With Cdst
pdb|2RDU|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Glyoxylate
pdb|2RDW|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With Sulfate
Length = 387
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 266/374 (71%), Gaps = 7/374 (1%)
Query: 2 TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSK 61
+ + + + +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++
Sbjct: 17 SMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAE 76
Query: 62 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVS 121
D++T+VLG +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+
Sbjct: 77 TDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVA 136
Query: 122 STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180
GP +R+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP
Sbjct: 137 EAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPP 196
Query: 181 HLTLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
L +KN+E + + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L
Sbjct: 197 QLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGIL 256
Query: 238 TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297
+DA A+++G GI+VSNHGARQLD VPAT+ L E+V+A +G+V VFLDGGVR+GTD
Sbjct: 257 RGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTD 316
Query: 298 VFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 357
V KALALGA VFVGRP+ + LA GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct: 317 VLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTL 376
Query: 358 IVTHWDTPGAVARL 371
+ + P AV+++
Sbjct: 377 VRKN---PLAVSKI 387
>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|B Chain B, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|C Chain C, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate.
pdb|2W0U|D Chain D, Crystal Structure Of Human Glycolate Oxidase In Complex
With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]-
1,2,3-Thiadiazole-4-Carboxylate
Length = 370
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/366 (52%), Positives = 263/366 (71%), Gaps = 7/366 (1%)
Query: 10 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVL 69
+ +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++ D++T+VL
Sbjct: 8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVL 67
Query: 70 GFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP-GIR 128
G +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+ GP +R
Sbjct: 68 GQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALR 127
Query: 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188
+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP L +KN+E
Sbjct: 128 WLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFE 187
Query: 189 GLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
+ + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L +DA A
Sbjct: 188 TSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREA 247
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+++G GI+VSNHGARQLD VPAT+ L E+V+A +G+V VFLDGGVR+GTDV KALALG
Sbjct: 248 VKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALG 307
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTP 365
A VFVGRP+ + LA GE GV+ VL++L++EF L MALSGC+++K I + + + P
Sbjct: 308 AKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN---P 364
Query: 366 GAVARL 371
AV+++
Sbjct: 365 LAVSKI 370
>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1
Length = 392
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 266/374 (71%), Gaps = 7/374 (1%)
Query: 2 TYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSK 61
+ + + + +YE AK LPK +YDYY SGA D+ TL +N AFSR PR+LR+V++
Sbjct: 22 SMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAE 81
Query: 62 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVS 121
D++T+VLG +SMPI + TA Q+MAH +GE GT M LSSWATSS+EEV+
Sbjct: 82 TDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVA 141
Query: 122 STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180
GP +R+ QLY+ K R V +LV++AE+ G+KAI +TVDTP LG R D++NRF LPP
Sbjct: 142 EAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPP 201
Query: 181 HLTLKNYEGLYIG---KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
L +KN+E + + + DDSGLA+YVA ID S++W+D+KWL+ +TSLPI+ KG+L
Sbjct: 202 QLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGIL 261
Query: 238 TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297
+DA A+++G GI+VSNHGARQLD VPAT+ L E+V+A +G+V VFLDGGVR+GTD
Sbjct: 262 RGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTD 321
Query: 298 VFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 357
V KALALGA VFVGRP+ + LA GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct: 322 VLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTL 381
Query: 358 IVTHWDTPGAVARL 371
+ + P AV+++
Sbjct: 382 VRKN---PLAVSKI 392
>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|B Chain B, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|C Chain C, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|D Chain D, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|E Chain E, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|F Chain F, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|G Chain G, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
pdb|1TB3|H Chain H, Crystal Structure Analysis Of Recombinant Rat Kidney Long-
Chain Hydroxy Acid Oxidase
Length = 352
Score = 297 bits (761), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 223/353 (63%), Gaps = 8/353 (2%)
Query: 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTT 66
+ + +++A A+++L K +D+ A+D T EN AF RI RPR LRD+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 67 TVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP- 125
T+ G IS PI I+PTAF +A P+GE +SS+A+ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
G R+FQLY+ + + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L ++ LK
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLK 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
+ L K +K S S+ S W D+ LQ+IT LPI++KG+LT EDA LA
Sbjct: 182 DLRAL---KEEKPTQSVPVSFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+++ GI+VSNHG RQLD V A++ AL EVV A KG++ V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358
A +F+GRP+ + LA GE GV++VL +L E M LSGC+S+ EI+ + I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|B Chain B, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole.
pdb|3SGZ|C Chain C, High Resolution Crystal Structure Of Rat Long Chain
Hydroxy Acid Oxidase In Complex With The Inhibitor
4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2,
3-Thiadiazole
Length = 352
Score = 288 bits (737), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 219/353 (62%), Gaps = 8/353 (2%)
Query: 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTT 66
+ + +++A A+++L K +D+ A+D T EN AF RI RPR LRD+SK+D T
Sbjct: 2 LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61
Query: 67 TVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGP- 125
T+ G IS PI I+PTAF +A P+GE +SS+A+ S+E++ + P
Sbjct: 62 TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121
Query: 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185
G R+FQLY+ + + Q+V+RAE GFKA+ +T+DTP LG R D +N+ L ++
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181
Query: 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245
L K +K S + S W D+ LQ+IT LPI++KG+LT EDA LA
Sbjct: 182 ALRAL---KEEKPTQSVPVLFPKA----SFCWNDLSLLQSITRLPIILKGILTKEDAELA 234
Query: 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305
+++ GI+VSNHG RQLD V A++ AL EVV A KG++ V++DGGVR GTDV KALALG
Sbjct: 235 MKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALG 294
Query: 306 ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358
A +F+GRP+ + LA GE GV++VL +L E M LSGC+S+ EI+ + I
Sbjct: 295 ARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISPDLI 347
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 213/350 (60%), Gaps = 3/350 (0%)
Query: 9 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTV 68
NV +Y LA+++LPKMVYDY GAED++ ++ NR+ F + F+P+ L DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 69 LGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIR 128
LG SMP++I PTA P+G+ G LS+ + S+E+++ G
Sbjct: 67 LGKRQSMPLLIGPTALNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188
+FQLYV HR + +V +A G+ + LT D G RE D+ NRF +PP LTLKN+E
Sbjct: 127 WFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 189 GLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 248
G+ +GKMDK + A+ ++ Q+D S NW+ ++WL+ + +LVKG+L+AEDA I
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE 245
Query: 249 GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASG 308
GA G+I+SNHG RQLD + + L + V AK PV +D G RRG+D+ KALALGA
Sbjct: 246 GADGVILSNHGGRQLDCAISPMEVLAQSV--AKTGKPVLIDSGFRRGSDIVKALALGAEA 303
Query: 309 VFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358
V +GR + LA GE GV +VL +L+ + + T+A GC + ++ +++
Sbjct: 304 VLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYL 353
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 274 bits (700), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 212/350 (60%), Gaps = 3/350 (0%)
Query: 9 NVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTV 68
NV +Y LA+++LPKMVYDY GAED++ ++ NR+ F + F+P+ L DVS+ + V
Sbjct: 7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEV 66
Query: 69 LGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTGPGIR 128
LG SMP++I PT P+G+ G LS+ + S+E+++ G
Sbjct: 67 LGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDL 126
Query: 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYE 188
+FQLYV HR + +V +A G+ + LT D G RE D+ NRF +PP LTLKN+E
Sbjct: 127 WFQLYVI-HREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFE 185
Query: 189 GLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 248
G+ +GKMDK + A+ ++ Q+D S NW+ ++WL+ + +LVKG+L+AEDA I
Sbjct: 186 GIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE 245
Query: 249 GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASG 308
GA G+I+SNHG RQLD + + L + V AK PV +D G RRG+D+ KALALGA
Sbjct: 246 GADGVILSNHGGRQLDCAISPMEVLAQSV--AKTGKPVLIDSGFRRGSDIVKALALGAEA 303
Query: 309 VFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358
V +GR + LA GE GV +VL +L+ + + T+A GC + ++ +++
Sbjct: 304 VLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYL 353
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 254 bits (648), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 20 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 79
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 80 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 139
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 140 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 199
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 200 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 249
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 250 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 309
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 310 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 369
Query: 349 SLKEI 353
S+ E+
Sbjct: 370 SIAEL 374
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 215/361 (59%), Gaps = 17/361 (4%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 18 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 77
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 78 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 137
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFV 177
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG++E D+K +F
Sbjct: 138 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKLKF- 196
Query: 178 LPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237
T ++ + K + + G + ++ ID SL WKD++ L+ T LPI++KGV
Sbjct: 197 ---SNTKAGFKAM--KKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQ 251
Query: 238 TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFLDGGV 292
ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+DGGV
Sbjct: 252 RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGV 311
Query: 293 RRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKE 352
RRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G S+ E
Sbjct: 312 RRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAE 371
Query: 353 I 353
+
Sbjct: 372 L 372
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 114 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 173
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 174 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 233
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 234 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 293
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 294 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 343
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 344 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 403
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 404 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 463
Query: 349 SLKEI 353
S+ E+
Sbjct: 464 SIAEL 468
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 349 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 409 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468
Query: 349 SLKEI 353
S+ E+
Sbjct: 469 SIAEL 473
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 252 bits (643), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 214/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ TA K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 349 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 409 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468
Query: 349 SLKEI 353
S+ E+
Sbjct: 469 SIAEL 473
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + +Y+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAFYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 349 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 409 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468
Query: 349 SLKEI 353
S+ E+
Sbjct: 469 SIAEL 473
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 251 bits (640), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGTIMT--LSSWATSSVEEV 120
++T +LG ++ +P ++ T K+ +P EGE T + +S+ A+ S EE+
Sbjct: 179 ISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQMISTAASCSPEEI 238
Query: 121 SSTGPG---IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
P I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SNHG RQLD+ A + L E + + K ++ VF+
Sbjct: 349 KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 409 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468
Query: 349 SLKEI 353
S+ E+
Sbjct: 469 SIAEL 473
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 212/365 (58%), Gaps = 25/365 (6%)
Query: 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKID 63
+ I N+ ++E LA + L K + YY+SGA D+ T +EN NA+ RI F+P+IL DV K+D
Sbjct: 119 LDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVD 178
Query: 64 MTTTVLGFNISMPIMIAPTAFQKMAHP-EGECXXXXXXXXXGT-----IMTLSSWATSSV 117
++T +LG ++ +P ++ TA K+ +P EGE T I TL+S + +
Sbjct: 179 ISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEI 238
Query: 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF- 176
E + + I+++QLYV R + LVK E+ G KA+ +TVD P LG+RE D+K +F
Sbjct: 239 IEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFS 298
Query: 177 ---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
P + N E + G + ++ ID SL WKD++ L+ T LPI++
Sbjct: 299 NTKAGPKAMKKTNVE----------ESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVI 348
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV-----QAAKGRVPVFL 288
KGV ED A + G +G+++SN G RQLD+ A + L E + + K ++ VF+
Sbjct: 349 KGVQRTEDVIKAAEIGVSGVVLSNQGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408
Query: 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCR 348
DGGVRRGTDV KAL LGA GV +GRP ++ + G GV K +++LRDE E++M L G
Sbjct: 409 DGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVT 468
Query: 349 SLKEI 353
S+ E+
Sbjct: 469 SIAEL 473
>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|1 Chain 1, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|2 Chain 2, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|3 Chain 3, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Y Chain Y, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Z Chain Z, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 226
Score = 240 bits (612), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 114/130 (87%), Positives = 126/130 (96%)
Query: 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEV 276
WKDV WLQTITSLPILVKGV+TAEDA LA+Q+GAAGIIVSNHGARQLDYVPAT+MALEEV
Sbjct: 97 WKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEV 156
Query: 277 VQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRD 336
V+AA+GR+PVFLDGGVRRGTDVFKALALGA+GVF+GRPV FSLA +GEAGV+KVLQM+RD
Sbjct: 157 VKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRD 216
Query: 337 EFELTMALSG 346
EFELTMALSG
Sbjct: 217 EFELTMALSG 226
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 81/96 (84%)
Query: 65 TTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEVSSTG 124
TTT+LGF ISMPIMIAPTA QKMAHPEGE GTIMTLSSWATSSVEEV+STG
Sbjct: 1 TTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTG 60
Query: 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160
PGIRFFQLYV K RNV AQLV+RAERAGFKAIALTV
Sbjct: 61 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTV 96
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 195/360 (54%), Gaps = 20/360 (5%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 14 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 72
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 73 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 132
Query: 121 SST-GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 133 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 193 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAAHSGLPVFV 240
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293
KG+ EDA +AI+ GA+GI VSNHGARQL P + L + + RVP+ D GVR
Sbjct: 241 KGIQHPEDADMAIKAGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVR 300
Query: 294 RGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 353
RG V KALA GA V +GRPV F LA+ G G VL + + M L+G ++++++
Sbjct: 301 RGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 360
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 195/360 (54%), Gaps = 20/360 (5%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 14 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 72
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 73 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 132
Query: 121 SST-GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 133 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 192
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 193 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAGHSGLPVFV 240
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293
KG+ EDA +AI+ GA+GI VSNHGARQL P + L + + RVP+ D GVR
Sbjct: 241 KGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVR 300
Query: 294 RGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 353
RG V KALA GA V +GRPV F LA+ G G VL + + M L+G ++++++
Sbjct: 301 RGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 360
>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
pdb|2NLI|B Chain B, Crystal Structure Of The Complex Between L-Lactate Oxidase
And A Substrate Analogue At 1.59 Angstrom Resolution
Length = 368
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 195/360 (54%), Gaps = 20/360 (5%)
Query: 1 MTYISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVS 60
+ YI ++ N + E A + +P ++Y A + D+WT + N A+ L PR+ +DV
Sbjct: 8 IKYI-DVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVE 66
Query: 61 KIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECXXXXXXXXXGTIMTLSSWATSSVEEV 120
D +T +LG I P ++AP A +AH E GTIM++S+++ ++ EE+
Sbjct: 67 APDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEI 126
Query: 121 SST-GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179
S G R+FQ+Y+ K + ++ A+ G AI LT D+ G R+ D+KN+FV P
Sbjct: 127 SEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYP 186
Query: 180 PHLTL-KNY-----EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233
+ + + Y EG+ + + Y A++ + ++ +D++ + + LP+ V
Sbjct: 187 FGMPIVQRYLRGTAEGMSLNNI----------YGASK--QKISPRDIEEIAGHSGLPVFV 234
Query: 234 KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293
KG+ EDA +AI+ GA+GI VSNHGARQL P + L + + RVP+ D GVR
Sbjct: 235 KGIQHPEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVR 294
Query: 294 RGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEI 353
RG V KALA GA V +GRPV F LA+ G G VL + + M L+G ++++++
Sbjct: 295 RGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDL 354
>pdb|1P0K|A Chain A, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0K|B Chain B, Ipp:dmapp Isomerase Type Ii Apo Structure
pdb|1P0N|A Chain A, Ipp:dmapp Isomerase Type Ii, Fmn Complex
pdb|1P0N|B Chain B, Ipp:dmapp Isomerase Type Ii, Fmn Complex
Length = 349
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 25/178 (14%)
Query: 212 DRSLN--WKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGA------ 260
DRS + K ++ + + S+P++VK V ++ A + GAA + + +G
Sbjct: 160 DRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKI 219
Query: 261 ------RQLDYVPATVMALEEVVQAAKGRVP---VFLDGGVRRGTDVFKALALGASGVFV 311
RQ+ + + ++ + + P + GG++ DV KA+ALGAS +
Sbjct: 220 ENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGM 279
Query: 312 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT-----HWDT 364
+L GE G+ + +Q++ +E +L M + G R++ ++ + +V HW T
Sbjct: 280 AGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGETHHWLT 337
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 22/115 (19%)
Query: 213 RSLNW-KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGI-------------IVSNH 258
SLN + +K +++ ++ ++V V+T E I+ GA GI IV+
Sbjct: 168 HSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGV 227
Query: 259 GARQLDYVPATVMALEEVVQ-AAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
G Q + A+E+ A+K +P+ DGG+R D+ KALA+GAS V +G
Sbjct: 228 GVPQ-------ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 22/115 (19%)
Query: 213 RSLNW-KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGI-------------IVSNH 258
SLN + +K +++ ++ ++V V+T E I+ GA GI IV+
Sbjct: 129 HSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGV 188
Query: 259 GARQLDYVPATVMALEEVVQ-AAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
G Q + A+E+ A+K +P+ DGG+R D+ KALA+GAS V +G
Sbjct: 189 GVPQ-------ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 229 LPILVKGVLTAEDASLAIQYGAAGI-------------IVSNHGARQLDYVPATVMALEE 275
LP++ V T E I+ GA + +V+ G QL VM E
Sbjct: 279 LPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQL----TAVMECSE 334
Query: 276 VVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
V A K VP+ DGG+R D+ KALA GA V VG
Sbjct: 335 V--ARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369
>pdb|2ZRU|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRU|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn
pdb|2ZRV|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRV|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn.
pdb|2ZRW|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRW|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Ipp.
pdb|2ZRX|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRX|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Fmn And Dmapp.
pdb|2ZRY|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRY|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp.
pdb|2ZRZ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|2ZRZ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp
pdb|3B03|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B03|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Vipp.
pdb|3B04|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B04|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Oipp.
pdb|3B05|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B05|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Ipp At 2.2a Resolution.
pdb|3B06|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3B06|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase In Complex With Reduced Fmn And
Dmapp.
pdb|3VKJ|A Chain A, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|B Chain B, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|C Chain C, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
pdb|3VKJ|D Chain D, Crystal Structure Of Sulfolobus Shibatae Isopentenyl
Diphosphate Isomerase, Octameric Form
Length = 368
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 290 GGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRS 349
GG+R G D KA+ALGA + PV S A++G+ + + + + E + M L+G +
Sbjct: 274 GGIRSGLDAAKAIALGADIAGMALPVLKS-AIEGKESLEQFFRKIIFELKAAMMLTGSKD 332
Query: 350 LKEITRNHIV 359
+ + + IV
Sbjct: 333 VDALKKTSIV 342
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 220 VKWL-QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEE--- 275
+KW+ QT + ++ V+T E A+ I GA G+ + G+ + + VMA+
Sbjct: 313 IKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRI-GMGSGSI-CITQEVMAVGRPQG 370
Query: 276 -----VVQ-AAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
V + A++ +P DGG+ + KALALGAS V +G
Sbjct: 371 TAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 220 VKWL-QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEE--- 275
+KW+ QT + ++ V+T E A+ I GA G+ + G+ + + VMA+
Sbjct: 313 IKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRI-GMGSGSI-CITQEVMAVGRPQG 370
Query: 276 -----VVQ-AAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
V + A++ +P DGG+ + KALALGAS V +G
Sbjct: 371 TAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVG 312
+PV DGG+R D+ KA+A GAS V VG
Sbjct: 234 IPVIADGGIRFSGDISKAIAAGASCVMVG 262
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVG 312
+PV DGG+R D+ KA+A GAS V VG
Sbjct: 212 IPVIADGGIRFSGDISKAIAAGASCVMVG 240
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 228 SLPILVKGVLTAEDASLAIQYGA----AGI---------IVSNHGARQLDYVPATVMALE 274
SL I+ V TAE I+ GA GI +V+ G QL V +
Sbjct: 297 SLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAV------YD 350
Query: 275 EVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
+A K +PV DGG++ D+ KALA GA V +G
Sbjct: 351 CATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVG 312
+PV DGG+R D+ KA+A GAS V VG
Sbjct: 335 IPVIADGGIRFSGDISKAIAAGASCVXVG 363
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 283 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQML---RDEFE 339
+V + GG+R D+ KAL LGA V + R + L + + V +V+ ++ +++
Sbjct: 278 KVEILASGGIRHPLDIIKALVLGAKAVGLSRTM---LELVEQHSVHEVIAIVNGWKEDLR 334
Query: 340 LTMALSGCRSLKEITRN 356
L M C+++ E+ RN
Sbjct: 335 LIMCALNCQTIAEL-RN 350
>pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
pdb|1JCN|B Chain B, Binary Complex Of Human Type-I Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp
Length = 514
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324
VP+ DGG++ V KALALGAS V +G + + GE
Sbjct: 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGE 399
>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
In Complex With Mycophenolic Acid
Length = 514
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324
VPV DGG++ + KALALGAS V +G + + GE
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 399
>pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1B3O|B Chain B, Ternary Complex Of Human Type-Ii Inosine Monophosphate
Dehydrogenase With 6-Cl-Imp And Selenazole Adenine
Dinucleotide
pdb|1NF7|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NF7|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With Ribavirin Monophosphate And C2-
Mycophenolic Adenine Dinucleotide
pdb|1NFB|A Chain A, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
pdb|1NFB|B Chain B, Ternary Complex Of The Human Type Ii Inosine Monophosphate
Dedhydrogenase With 6cl-Imp And Nad
Length = 514
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324
VPV DGG++ + KALALGAS V +G + + GE
Sbjct: 359 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGE 399
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 228 SLPILVKGVLTAEDASLAIQYGA----AGI---------IVSNHGARQLDYVPATVMALE 274
SL I+ V TAE I+ GA GI +V+ G QL V +
Sbjct: 297 SLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAV------YD 350
Query: 275 EVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
+A K +PV DGG++ D KALA GA V +G
Sbjct: 351 CATEARKHGIPVIADGGIKYSGDXVKALAAGAHVVXLG 388
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 270 VMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGR 313
+ A+ +V +A + + DGG+R DV KA+A GA V +G
Sbjct: 242 ITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGN 286
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 307 SGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTP 365
+G +G P +L +D + +RKVL DEF +A +H V HWD+P
Sbjct: 501 TGQEIGEKQPMNLGLDTDPNLRKVLSP-TDEFFGKLAFF----------DHYVLHWDSP 548
>pdb|2H6R|A Chain A, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|B Chain B, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|C Chain C, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|D Chain D, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|E Chain E, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|F Chain F, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|G Chain G, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
pdb|2H6R|H Chain H, Crystal Structure Of Triosephosphate Isomerase (Tim) From
Methanocaldococcus Jannaschii
Length = 219
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 264 DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 323
+ V TV A++E+ + K V G+ +G DV AL LGA GV + V + V
Sbjct: 155 EVVEGTVRAVKEINKDVK----VLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNV-- 208
Query: 324 EAGVRKVLQML 334
E +R++++ +
Sbjct: 209 EEAIRELIKFI 219
>pdb|1UUM|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUM|B Chain B, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Atovaquone
pdb|1UUO|A Chain A, Rat Dihydroorotate Dehydrogenase (Dhod)in Complex With
Brequinar
Length = 372
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 28/107 (26%)
Query: 237 LTAED----ASLAIQYGAAGIIVSN---------HGARQ-----LDYVPA---TVMALEE 275
LTA+D AS+A + G G+IV+N GA + L P + + E
Sbjct: 236 LTAQDKEDIASVARELGIDGLIVTNTTVSRPVGLQGALRSETGGLSGKPLRDLSTQTIRE 295
Query: 276 VVQAAKGRVPVFLDGGVRRGTDVFKALALGASGV-------FVGRPV 315
+ +GR+P+ GGV G D + + GAS V F+G PV
Sbjct: 296 MYALTQGRIPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPV 342
>pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|B Chain B, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|C Chain C, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|D Chain D, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
Length = 375
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 241 DASLAIQYGAAGIIVSNHGARQLDYVPATV----MALEEVVQAA----KGRVPVFLDGGV 292
D L + +A + RQLD T +A +++V A + R P+ LD V
Sbjct: 189 DIRLTVDANSAYTLADAGRLRQLDEYDLTCIEQPLAWDDLVDHAELARRIRTPLCLDESV 248
Query: 293 RRGTDVFKALALGASGVF 310
+D KALALGA GV
Sbjct: 249 ASASDARKALALGAGGVI 266
>pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|1YPF|B Chain B, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis
At 1.8 A Resolution
pdb|2A1Y|A Chain A, Crystal Structure Of Guac-Gmp Complex From Bacillus
Anthracis At 2.26 A Resolution
Length = 336
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 285 PVFLDGGVRRGTDVFKALALGASGVFVG 312
P+ DGG+R DV K++ GA+ V +G
Sbjct: 212 PIIADGGIRTNGDVAKSIRFGATMVMIG 239
>pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase
pdb|2GJN|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Complexed
With Fmn And Substrate
Length = 328
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 283 RVPVFLDGGVRRGTDVFKALALGASGVFVG------RPVPFSLAVDGEAGVRKVLQMLRD 336
RVP+ GG G + ALALGA + +G R P AV +A +R D
Sbjct: 172 RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAV--KAAIRAA-----D 224
Query: 337 EFELTMALSGCRSLKEITRNHI 358
E + + R+ + RN I
Sbjct: 225 ERSTDLIMRSLRNTARVARNAI 246
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 241 DASLAIQYGAAGIIVSNHGARQLDYVPATV----MALEEVVQAA----KGRVPVFLDGGV 292
D L + +A + RQLD T +A +++V A + R P+ LD V
Sbjct: 189 DIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESV 248
Query: 293 RRGTDVFKALALGASGVF 310
+D KALALGA GV
Sbjct: 249 ASASDARKALALGAGGVI 266
>pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|B Chain B, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|C Chain C, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|D Chain D, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGH|A Chain A, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|B Chain B, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|C Chain C, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|D Chain D, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
Length = 375
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 241 DASLAIQYGAAGIIVSNHGARQLDYVPATV----MALEEVVQAA----KGRVPVFLDGGV 292
D L + +A + RQLD T +A +++V A + R P+ LD V
Sbjct: 189 DIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESV 248
Query: 293 RRGTDVFKALALGASGVF 310
+D KALALGA GV
Sbjct: 249 ASASDARKALALGAGGVI 266
>pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|B Chain B, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|C Chain C, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|D Chain D, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 241 DASLAIQYGAAGIIVSNHGARQLDYVPATV----MALEEVVQAA----KGRVPVFLDGGV 292
D L + +A + RQLD T +A +++V A + R P+ LD V
Sbjct: 189 DIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESV 248
Query: 293 RRGTDVFKALALGASGVF 310
+D KALALGA GV
Sbjct: 249 ASASDARKALALGAGGVI 266
>pdb|3NQB|A Chain A, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3NQB|B Chain B, Crystal Structure Of Adenine Deaminase From Agrobacterium
Tumefaciens (Str. C 58)
pdb|3T81|A Chain A, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T81|B Chain B, Crystal Structure Of Diiron Adenine Deaminase
pdb|3T8L|A Chain A, Crystal Structure Of Adenine Deaminase With MnFE
pdb|3T8L|B Chain B, Crystal Structure Of Adenine Deaminase With MnFE
Length = 608
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 152 GFKAIALTVDTPRL---GRREADIKNRFVLPP 180
G K T+D PR G EAD+K+ FV+PP
Sbjct: 409 GAKVRLATIDRPRFTQWGETEADVKDGFVVPP 440
>pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|B Chain B, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|C Chain C, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|D Chain D, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1XPY|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
Length = 375
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 241 DASLAIQYGAAGIIVSNHGARQLDYVPATV----MALEEVVQAA----KGRVPVFLDGGV 292
D L + +A + RQLD T +A +++V A + R P+ LD V
Sbjct: 189 DIRLTVDANSAYTLADAGRLRQLDEYDLTYIEQPLAWDDLVDHAELARRIRTPLCLDESV 248
Query: 293 RRGTDVFKALALGASGVF 310
+D KALALGA GV
Sbjct: 249 ASASDARKALALGAGGVI 266
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 286 VFLDGGVRRGTDVFKALALGASGVFVG 312
V DGG+R D+ KA+A GA V +G
Sbjct: 331 VIADGGIRYSGDIVKAIAAGADAVMLG 357
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 286 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324
+ DGG++ D+ KALA GA V +G + S GE
Sbjct: 202 IVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGE 240
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315
V + DG + DV KA+A GA V +G P+
Sbjct: 278 VHIIADGSIENSGDVVKAIACGADAVVLGSPL 309
>pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
pdb|4AVF|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-
Monophosphate Dehydrogenase
Length = 490
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 254 IVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
IV+ G Q+ + ALE VP+ DGG+R D+ KA+ GA V +G
Sbjct: 309 IVAGVGVPQISAIANVAAALEGT------GVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361
>pdb|3C3N|A Chain A, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|B Chain B, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|C Chain C, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
pdb|3C3N|D Chain D, Crystal Structure Of Dihydroorotate Dehydrogenase From
Trypanosoma Cruzi Strain Y
Length = 312
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 277 VQAAKGRVP---VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQM 333
V A R P VF GGV G D F + GAS V VG +L +G +
Sbjct: 233 VNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGT----ALQEEGPG----IFTR 284
Query: 334 LRDEFELTMALSGCRSLKEI 353
L DE MA G R+L+E
Sbjct: 285 LEDELLEIMARKGYRTLEEF 304
>pdb|2E68|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E68|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Dihydroorotate
pdb|2E6A|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6A|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Orotate
pdb|2E6D|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6D|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Fumarate
pdb|2E6F|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
pdb|2E6F|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Oxonate
Length = 314
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 277 VQAAKGRVP---VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQM 333
V A R P VF GGV G D F + GAS V VG +L +G +
Sbjct: 235 VNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGT----ALQEEGPG----IFTR 286
Query: 334 LRDEFELTMALSGCRSLKEI 353
L DE MA G R+L+E
Sbjct: 287 LEDELLEIMARKGYRTLEEF 306
>pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine
5'-monophosphate Dehydrogenase
Length = 510
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 254 IVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
IV+ G Q+ + ALE VP+ DGG+R D+ KA+ GA V +G
Sbjct: 329 IVAGVGVPQISAIANVAAALEGT------GVPLIADGGIRFSGDLAKAMVAGAYCVMMG 381
>pdb|2DJL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydroorotate
Dehydrogenase In Complex With Succinate
pdb|2DJX|A Chain A, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
pdb|2DJX|B Chain B, Crystal Structure Of Native Trypanosoma Cruzi
Dihydroorotate Dehydrogenase
Length = 314
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 277 VQAAKGRVP---VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQM 333
V A R P VF GGV G D F + GAS V VG +L +G +
Sbjct: 235 VNAFYRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQVGT----ALQEEGPG----IFTR 286
Query: 334 LRDEFELTMALSGCRSLKEI 353
L DE MA G R+L+E
Sbjct: 287 LEDELLEIMARKGYRTLEEF 306
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 29/107 (27%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRREADI-------KNRFVLP--PHLTLKNY 187
QL+KR + G + LT+D PRLG +EA + KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLG-QEATVGKATGFLKNFLIEPFVPHSQAEEF 119
Query: 188 --------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 120 YVCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|B Chain B, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|C Chain C, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
Length = 281
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 253 IIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290
I VS G+ +LDY P + + + KGR F DG
Sbjct: 89 IAVSAVGSLRLDYKPGDFVVPNQFIDMTKGRTYTFFDG 126
>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|B Chain B, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|C Chain C, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|D Chain D, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|E Chain E, Structure Of The Synthase Subunit Of Plp Synthase
pdb|1ZNN|F Chain F, Structure Of The Synthase Subunit Of Plp Synthase
Length = 325
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
GR+PV F GGV D + LGA GVFVG
Sbjct: 234 GRLPVVNFAAGGVTTPADAALMMHLGADGVFVG 266
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG-------RPVPFSLAV 321
G++PV F GGV D + LGA GVFVG P F+ A+
Sbjct: 206 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAI 254
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 266 VPATVMALEEVVQAAKGRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
VP ++ L++V++ KG++PV F GGV D + LG GVFVG
Sbjct: 185 VPVSL--LKDVLE--KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 266 VPATVMALEEVVQAAKGRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
VP ++ L++V++ KG++PV F GGV D + LG GVFVG
Sbjct: 191 VPVSL--LKDVLE--KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVG 235
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG-------RPVPFSLAV 321
G++PV F GGV D + LGA GVFVG P F+ A+
Sbjct: 203 GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAI 251
>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|B Chain B, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|C Chain C, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 313
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
GR+PV F GGV D + LGA GVFVG
Sbjct: 224 GRLPVVNFAAGGVATPADAALMMMLGADGVFVG 256
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRR------EADIKNRFVLP--PHLTLKNY- 187
QL+KR + G + LT+D PRLG+ +KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 188 -------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
GR+PV F GGV D +A+G GVFVG
Sbjct: 246 GRLPVVNFAAGGVATPADAALMMAMGMDGVFVG 278
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 31/125 (24%)
Query: 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALE 274
W + L+ + PI V G+ S H AR+ L Y +A
Sbjct: 105 WSHMTVLENVMEAPIQVLGL-------------------SKHDARERALKY-----LAKV 140
Query: 275 EVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE--AGVRKVLQ 332
+ + A+G+ PV L GG ++ + +ALA+ + P A+D E V +++Q
Sbjct: 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTS---ALDPELVGEVLRIMQ 197
Query: 333 MLRDE 337
L +E
Sbjct: 198 QLAEE 202
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 27/106 (25%)
Query: 143 QLVKRAERAGFKAIALTVD------TPRLGRR------EADIKNRFVLP--PHLTLKNY- 187
QL+KR + G + LT+D PRLG+ +KN + P PH + +
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEFY 120
Query: 188 -------EGLYI-----GKMDKTDDSGLASYVANQIDRSLNWKDVK 221
EG Y+ G +D D A + +D LN +D+K
Sbjct: 121 VCIYATREGDYVLFHHEGGVDVGDVDAKAQKLLVGVDEKLNPEDIK 166
>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
Length = 330
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVG 312
GR+PV F GGV D + LG+ GVFVG
Sbjct: 239 GRLPVVNFAAGGVATPADAALMMQLGSDGVFVG 271
>pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|B Chain B, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|C Chain C, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|D Chain D, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|E Chain E, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|F Chain F, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|G Chain G, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|H Chain H, Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei
Length = 225
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 267 PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312
P + E+V+ V V G+ G DV KA+ LG GV +
Sbjct: 160 PEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLA 205
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 233 VKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 292
V G A +LAI A +NH +VP TV L ++V A+ + G V
Sbjct: 313 VPGSPVAGGVNLAINQ-AFNFNGTNHFVDGASFVPPTVPVLSQIVSGAQSAADLLASGLV 371
Query: 293 RR-GTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRK 329
+D ++ A+ G P PF L A VR
Sbjct: 372 YSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVVRS 409
>pdb|1TYG|A Chain A, Structure Of The Thiazole SynthaseTHIS COMPLEX
pdb|1TYG|C Chain C, Structure Of The Thiazole SynthaseTHIS COMPLEX
Length = 253
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 281 KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315
+ +VPV +D G+ D A+ LGA GV + V
Sbjct: 174 QAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAV 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,029,108
Number of Sequences: 62578
Number of extensions: 381402
Number of successful extensions: 1265
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 93
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)