Query 017434
Match_columns 371
No_of_seqs 280 out of 2056
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 7.2E-92 1.6E-96 646.8 31.1 360 7-366 1-361 (363)
2 PLN02493 probable peroxisomal 100.0 2.2E-84 4.7E-89 630.3 36.0 366 6-371 2-367 (367)
3 PRK11197 lldD L-lactate dehydr 100.0 3.8E-81 8.3E-86 611.0 35.6 356 6-362 2-379 (381)
4 PLN02535 glycolate oxidase 100.0 3.7E-81 8.1E-86 608.5 35.3 359 5-366 3-361 (364)
5 cd04736 MDH_FMN Mandelate dehy 100.0 2.8E-80 6.1E-85 601.1 34.5 342 11-355 1-361 (361)
6 TIGR02708 L_lactate_ox L-lacta 100.0 5.9E-80 1.3E-84 600.0 35.6 350 4-360 10-360 (367)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 5.1E-79 1.1E-83 597.1 35.8 351 7-358 18-383 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 2.3E-78 4.9E-83 588.2 35.0 347 6-358 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 2.3E-76 5E-81 577.8 33.3 343 17-359 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 1.5E-74 3.3E-79 561.6 36.4 339 11-356 1-344 (344)
11 PLN02979 glycolate oxidase 100.0 2.3E-70 4.9E-75 527.8 32.8 324 48-371 43-366 (366)
12 COG1304 idi Isopentenyl diphos 100.0 3.8E-64 8.2E-69 488.6 25.0 348 10-362 1-352 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 8.4E-59 1.8E-63 446.4 34.8 299 11-355 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 6.2E-38 1.3E-42 304.6 26.1 270 41-355 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 7.4E-38 1.6E-42 306.5 25.8 279 43-362 27-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 2.2E-36 4.7E-41 294.6 25.1 276 44-360 21-331 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 1E-28 2.3E-33 236.7 23.8 256 45-360 3-312 (321)
18 PRK05458 guanosine 5'-monophos 100.0 3.9E-28 8.4E-33 233.7 24.9 256 45-360 6-315 (326)
19 TIGR01305 GMP_reduct_1 guanosi 100.0 9.2E-28 2E-32 228.4 22.7 256 44-356 8-329 (343)
20 PRK08649 inosine 5-monophospha 99.9 2.7E-25 5.8E-30 218.1 24.7 288 45-359 17-366 (368)
21 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 8.6E-26 1.9E-30 221.1 20.6 291 43-359 12-368 (369)
22 cd02808 GltS_FMN Glutamate syn 99.9 2.3E-24 5E-29 214.3 26.9 274 62-360 60-391 (392)
23 cd00381 IMPDH IMPDH: The catal 99.9 1.3E-24 2.8E-29 211.1 23.6 256 45-358 3-321 (325)
24 PF00478 IMPDH: IMP dehydrogen 99.9 3E-24 6.5E-29 207.9 21.4 256 45-357 4-336 (352)
25 PRK05096 guanosine 5'-monophos 99.9 1.4E-23 3E-28 199.8 22.2 256 44-356 9-330 (346)
26 TIGR01037 pyrD_sub1_fam dihydr 99.9 3.6E-23 7.9E-28 199.3 23.0 238 64-356 1-298 (300)
27 PRK10415 tRNA-dihydrouridine s 99.9 4.3E-23 9.3E-28 200.3 21.7 251 67-359 2-285 (321)
28 PRK06843 inosine 5-monophospha 99.9 1.2E-22 2.6E-27 200.2 25.0 255 44-355 10-380 (404)
29 COG0042 tRNA-dihydrouridine sy 99.9 5.4E-23 1.2E-27 199.3 21.8 252 68-360 4-287 (323)
30 cd04739 DHOD_like Dihydroorota 99.9 5E-22 1.1E-26 193.2 25.3 239 63-356 1-302 (325)
31 PRK07259 dihydroorotate dehydr 99.9 8.3E-22 1.8E-26 189.9 25.7 239 63-356 1-298 (301)
32 PRK10550 tRNA-dihydrouridine s 99.9 4.5E-22 9.8E-27 192.1 22.6 243 75-359 1-279 (312)
33 TIGR00737 nifR3_yhdG putative 99.9 6.9E-22 1.5E-26 192.0 23.3 247 69-357 2-281 (319)
34 cd04740 DHOD_1B_like Dihydroor 99.9 3.4E-21 7.3E-26 185.2 26.1 237 65-356 1-295 (296)
35 PRK07565 dihydroorotate dehydr 99.9 1.9E-21 4.1E-26 190.1 24.4 241 63-358 2-306 (334)
36 TIGR00742 yjbN tRNA dihydrouri 99.9 1.2E-21 2.6E-26 189.6 21.4 241 76-360 2-281 (318)
37 PLN02495 oxidoreductase, actin 99.9 4.4E-21 9.5E-26 188.9 24.3 252 59-358 6-337 (385)
38 cd02940 DHPD_FMN Dihydropyrimi 99.9 6.3E-21 1.4E-25 183.6 22.1 215 63-317 1-286 (299)
39 PLN02826 dihydroorotate dehydr 99.9 1.3E-19 2.9E-24 180.1 27.7 123 227-357 261-407 (409)
40 PRK08318 dihydropyrimidine deh 99.9 3.4E-20 7.3E-25 186.6 23.7 248 62-358 2-320 (420)
41 PTZ00314 inosine-5'-monophosph 99.9 1E-19 2.2E-24 185.7 26.3 144 212-355 265-466 (495)
42 PF01207 Dus: Dihydrouridine s 99.9 4.5E-21 9.8E-26 185.3 14.7 241 78-360 1-274 (309)
43 COG0167 PyrD Dihydroorotate de 99.9 1.1E-19 2.4E-24 173.3 23.8 139 212-358 145-308 (310)
44 PRK07107 inosine 5-monophospha 99.9 5.2E-20 1.1E-24 187.7 22.3 141 216-356 270-472 (502)
45 PRK11815 tRNA-dihydrouridine s 99.9 1E-19 2.3E-24 177.5 22.9 246 71-360 7-291 (333)
46 PRK05286 dihydroorotate dehydr 99.8 4E-19 8.6E-24 174.2 23.9 233 59-346 44-344 (344)
47 PRK02506 dihydroorotate dehydr 99.8 4.8E-19 1E-23 171.2 23.5 241 63-356 1-306 (310)
48 TIGR01302 IMP_dehydrog inosine 99.8 3.2E-19 6.9E-24 180.7 23.1 141 214-354 250-449 (450)
49 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 2.6E-19 5.7E-24 181.4 22.4 145 212-356 249-456 (475)
50 PLN02274 inosine-5'-monophosph 99.8 9.1E-19 2E-23 178.9 26.0 142 213-356 273-473 (505)
51 PRK05567 inosine 5'-monophosph 99.8 8.3E-19 1.8E-23 179.4 22.2 141 216-356 256-455 (486)
52 cd04741 DHOD_1A_like Dihydroor 99.8 7E-18 1.5E-22 162.0 22.9 223 66-342 1-294 (294)
53 cd04738 DHOD_2_like Dihydrooro 99.8 4.5E-18 9.7E-23 165.8 21.0 248 35-337 9-326 (327)
54 cd02801 DUS_like_FMN Dihydrour 99.8 5.5E-18 1.2E-22 156.8 18.1 200 76-317 1-218 (231)
55 PF01645 Glu_synthase: Conserv 99.8 3.5E-17 7.6E-22 159.8 23.3 253 71-348 62-368 (368)
56 cd02911 arch_FMN Archeal FMN-b 99.8 7.7E-18 1.7E-22 156.4 16.7 189 76-314 1-222 (233)
57 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 4.4E-17 9.5E-22 156.1 21.8 207 66-317 1-277 (289)
58 PRK07807 inosine 5-monophospha 99.8 1.2E-16 2.5E-21 162.4 22.9 142 215-356 254-458 (479)
59 KOG2335 tRNA-dihydrouridine sy 99.7 5.6E-17 1.2E-21 154.9 16.4 204 72-317 15-238 (358)
60 KOG2550 IMP dehydrogenase/GMP 99.7 1.5E-16 3.2E-21 153.0 15.0 147 211-357 274-477 (503)
61 TIGR01036 pyrD_sub2 dihydrooro 99.7 1.2E-15 2.5E-20 149.1 20.8 105 213-317 188-322 (335)
62 PF01180 DHO_dh: Dihydroorotat 99.7 3.9E-16 8.4E-21 150.1 16.6 120 215-342 149-295 (295)
63 TIGR03151 enACPred_II putative 99.7 4.9E-15 1.1E-19 143.0 22.3 184 67-320 6-198 (307)
64 TIGR00736 nifR3_rel_arch TIM-b 99.7 2.3E-15 5.1E-20 138.9 15.6 153 126-318 68-226 (231)
65 COG0069 GltB Glutamate synthas 99.6 2.2E-14 4.7E-19 143.3 20.8 263 71-357 163-477 (485)
66 PF03060 NMO: Nitronate monoox 99.6 6.9E-14 1.5E-18 136.6 23.3 200 67-319 6-226 (330)
67 PRK11750 gltB glutamate syntha 99.6 3.5E-14 7.5E-19 156.4 23.2 256 75-353 859-1165(1485)
68 KOG1436 Dihydroorotate dehydro 99.6 1.7E-13 3.6E-18 128.3 18.4 121 228-356 252-396 (398)
69 cd04730 NPD_like 2-Nitropropan 99.5 1.2E-12 2.6E-17 121.6 22.0 190 74-327 2-200 (236)
70 PRK13523 NADPH dehydrogenase N 99.5 3.5E-12 7.5E-17 124.8 17.9 227 65-317 6-310 (337)
71 COG2070 Dioxygenases related t 99.4 3.1E-12 6.7E-17 124.7 17.1 101 217-321 117-222 (336)
72 cd04743 NPD_PKS 2-Nitropropane 99.4 2.4E-11 5.1E-16 117.0 19.6 182 74-319 2-209 (320)
73 cd04742 NPD_FabD 2-Nitropropan 99.4 8.5E-11 1.9E-15 116.9 22.2 221 67-319 8-255 (418)
74 cd02803 OYE_like_FMN_family Ol 99.4 3.1E-11 6.8E-16 117.6 17.6 150 142-317 144-316 (327)
75 cd04722 TIM_phosphate_binding 99.3 1E-10 2.2E-15 104.0 18.4 185 77-313 1-200 (200)
76 TIGR02814 pfaD_fam PfaD family 99.3 6.4E-10 1.4E-14 111.4 23.4 223 67-320 13-261 (444)
77 cd04734 OYE_like_3_FMN Old yel 99.3 2.7E-10 5.7E-15 111.9 20.4 225 65-317 4-320 (343)
78 KOG2333 Uncharacterized conser 99.3 2.2E-10 4.8E-15 112.8 17.5 207 73-319 263-497 (614)
79 PRK01130 N-acetylmannosamine-6 99.3 7.2E-10 1.6E-14 102.2 20.2 173 94-317 26-207 (221)
80 cd02932 OYE_YqiM_FMN Old yello 99.3 4.2E-10 9E-15 110.3 19.2 104 212-317 203-325 (336)
81 cd04747 OYE_like_5_FMN Old yel 99.2 1.4E-09 3.1E-14 107.2 20.0 102 213-317 194-333 (361)
82 cd04729 NanE N-acetylmannosami 99.2 3.2E-09 6.9E-14 97.8 19.5 99 216-317 111-211 (219)
83 PRK08255 salicylyl-CoA 5-hydro 99.1 6.6E-09 1.4E-13 112.3 23.0 102 214-317 602-722 (765)
84 PRK06552 keto-hydroxyglutarate 99.1 2.3E-09 5.1E-14 98.2 16.2 173 129-318 15-189 (213)
85 KOG1799 Dihydropyrimidine dehy 99.1 1.8E-10 3.8E-15 109.4 8.6 255 53-359 92-424 (471)
86 PF04131 NanE: Putative N-acet 99.1 4.4E-09 9.5E-14 93.2 16.9 95 217-317 82-178 (192)
87 cd02933 OYE_like_FMN Old yello 99.1 2E-09 4.4E-14 105.5 15.0 101 213-317 202-319 (338)
88 cd02930 DCR_FMN 2,4-dienoyl-Co 99.1 5.5E-09 1.2E-13 103.1 18.1 227 65-317 4-311 (353)
89 cd04735 OYE_like_4_FMN Old yel 99.1 1.1E-09 2.4E-14 108.0 11.4 105 213-317 194-318 (353)
90 cd04733 OYE_like_2_FMN Old yel 99.0 2.9E-09 6.3E-14 104.4 14.2 150 142-317 152-327 (338)
91 cd02931 ER_like_FMN Enoate red 99.0 5.7E-09 1.2E-13 104.0 14.7 103 213-317 201-340 (382)
92 cd02929 TMADH_HD_FMN Trimethyl 99.0 2.9E-08 6.3E-13 98.5 19.6 102 213-317 200-324 (370)
93 COG1902 NemA NADH:flavin oxido 99.0 3.4E-08 7.4E-13 97.3 19.2 101 215-317 201-323 (363)
94 PRK09140 2-dehydro-3-deoxy-6-p 99.0 2.2E-08 4.7E-13 91.4 16.3 170 132-317 15-184 (206)
95 PRK10605 N-ethylmaleimide redu 98.9 1.9E-07 4.2E-12 92.4 22.2 98 215-317 211-326 (362)
96 cd04727 pdxS PdxS is a subunit 98.9 1.6E-07 3.4E-12 88.2 19.6 98 217-317 101-230 (283)
97 cd00331 IGPS Indole-3-glycerol 98.9 3.6E-08 7.8E-13 90.6 15.1 78 237-317 129-206 (217)
98 TIGR01182 eda Entner-Doudoroff 98.9 3.1E-08 6.6E-13 90.0 14.4 171 129-317 10-181 (204)
99 PRK00278 trpC indole-3-glycero 98.9 5.7E-08 1.2E-12 91.9 16.2 79 236-317 167-245 (260)
100 PRK07114 keto-hydroxyglutarate 98.8 6.5E-08 1.4E-12 89.0 14.2 171 130-316 18-192 (222)
101 TIGR00262 trpA tryptophan synt 98.8 3.7E-07 8.1E-12 86.1 18.6 156 135-319 20-234 (256)
102 PRK00507 deoxyribose-phosphate 98.8 6.7E-08 1.4E-12 89.1 12.9 93 217-314 109-210 (221)
103 cd04732 HisA HisA. Phosphorib 98.8 2.7E-07 5.8E-12 85.6 16.5 74 242-318 152-225 (234)
104 PRK06015 keto-hydroxyglutarate 98.8 2.1E-07 4.5E-12 84.3 15.1 169 130-316 7-176 (201)
105 cd00452 KDPG_aldolase KDPG and 98.8 1.1E-07 2.4E-12 85.8 12.5 168 130-316 7-175 (190)
106 PRK13125 trpA tryptophan synth 98.8 1.7E-06 3.7E-11 81.1 20.9 151 135-319 14-221 (244)
107 PF00724 Oxidored_FMN: NADH:fl 98.8 1.9E-07 4.2E-12 91.7 15.0 101 215-317 201-326 (341)
108 TIGR00007 phosphoribosylformim 98.7 3E-07 6.4E-12 85.2 14.6 101 216-318 60-224 (230)
109 COG3010 NanE Putative N-acetyl 98.7 1.7E-06 3.8E-11 77.3 18.4 86 228-316 126-213 (229)
110 CHL00200 trpA tryptophan synth 98.7 1.5E-06 3.3E-11 82.1 19.0 156 135-319 25-238 (263)
111 PF01081 Aldolase: KDPG and KH 98.7 5E-08 1.1E-12 88.1 8.3 168 132-317 13-181 (196)
112 COG0274 DeoC Deoxyribose-phosp 98.7 3E-07 6.6E-12 83.6 12.5 170 134-313 19-213 (228)
113 COG0107 HisF Imidazoleglycerol 98.6 4.6E-07 1E-11 82.3 12.6 117 216-347 62-251 (256)
114 TIGR00343 pyridoxal 5'-phospha 98.6 4.4E-07 9.5E-12 85.3 12.7 98 217-317 103-233 (287)
115 PRK07695 transcriptional regul 98.6 2E-06 4.4E-11 78.1 16.8 111 220-340 86-199 (201)
116 PLN02591 tryptophan synthase 98.6 4.4E-06 9.5E-11 78.4 18.5 156 135-319 12-225 (250)
117 PRK14024 phosphoribosyl isomer 98.6 2.9E-07 6.2E-12 86.1 9.5 77 239-318 149-228 (241)
118 cd04724 Tryptophan_synthase_al 98.6 5.1E-06 1.1E-10 77.8 17.8 155 135-319 10-222 (242)
119 PRK07455 keto-hydroxyglutarate 98.6 1.1E-06 2.4E-11 79.1 12.7 169 130-316 15-184 (187)
120 cd04731 HisF The cyclase subun 98.5 3.4E-07 7.5E-12 85.6 9.5 77 239-318 152-229 (243)
121 COG0800 Eda 2-keto-3-deoxy-6-p 98.5 6.4E-07 1.4E-11 81.0 10.7 165 135-316 21-185 (211)
122 PRK04180 pyridoxal biosynthesi 98.5 8.7E-07 1.9E-11 83.6 11.5 99 216-317 109-239 (293)
123 PRK00748 1-(5-phosphoribosyl)- 98.5 1E-06 2.2E-11 81.7 11.5 77 239-318 149-226 (233)
124 PRK05718 keto-hydroxyglutarate 98.5 3E-06 6.4E-11 77.7 14.2 170 129-317 17-187 (212)
125 TIGR00126 deoC deoxyribose-pho 98.5 2.1E-06 4.5E-11 78.6 12.9 94 215-313 103-205 (211)
126 KOG2334 tRNA-dihydrouridine sy 98.5 2.5E-06 5.4E-11 83.5 14.0 205 72-318 8-248 (477)
127 cd04728 ThiG Thiazole synthase 98.5 1.5E-06 3.2E-11 80.3 11.4 77 236-317 131-209 (248)
128 PF00218 IGPS: Indole-3-glycer 98.4 2.6E-06 5.7E-11 80.0 12.7 162 142-318 71-244 (254)
129 PRK00208 thiG thiazole synthas 98.4 2.2E-06 4.8E-11 79.3 11.6 77 236-317 131-209 (250)
130 PRK13111 trpA tryptophan synth 98.4 3.3E-05 7.1E-10 73.0 19.7 91 227-320 141-236 (258)
131 PRK01033 imidazole glycerol ph 98.4 9.5E-07 2.1E-11 83.5 9.3 76 240-318 156-232 (258)
132 TIGR03572 WbuZ glycosyl amidat 98.4 3.3E-06 7.2E-11 78.3 12.3 76 239-317 156-232 (232)
133 cd00959 DeoC 2-deoxyribose-5-p 98.4 6.1E-06 1.3E-10 75.2 13.7 91 216-311 103-202 (203)
134 PRK13587 1-(5-phosphoribosyl)- 98.4 4E-06 8.6E-11 78.1 12.6 100 216-317 64-226 (234)
135 TIGR01304 IMP_DH_rel_2 IMP deh 98.4 2.1E-06 4.4E-11 84.9 10.7 96 212-313 117-217 (369)
136 PRK02083 imidazole glycerol ph 98.3 4.8E-06 1E-10 78.4 11.7 77 239-318 156-233 (253)
137 PRK13957 indole-3-glycerol-pho 98.3 2.1E-05 4.6E-10 73.4 15.5 161 142-318 64-236 (247)
138 PF05690 ThiG: Thiazole biosyn 98.3 8E-05 1.7E-09 68.3 18.6 198 67-317 1-209 (247)
139 PF00977 His_biosynth: Histidi 98.3 3.1E-06 6.7E-11 78.6 9.3 101 216-318 61-226 (229)
140 PRK13585 1-(5-phosphoribosyl)- 98.3 1E-05 2.2E-10 75.5 12.8 76 239-317 152-227 (241)
141 cd00945 Aldolase_Class_I Class 98.3 6.8E-05 1.5E-09 66.9 17.8 173 90-312 12-201 (201)
142 cd04723 HisA_HisF Phosphoribos 98.3 1E-05 2.2E-10 75.3 12.4 101 216-318 66-224 (233)
143 TIGR01163 rpe ribulose-phospha 98.3 5.1E-05 1.1E-09 68.9 16.6 78 239-317 116-198 (210)
144 COG0106 HisA Phosphoribosylfor 98.3 1.2E-05 2.6E-10 74.2 12.1 101 216-318 63-227 (241)
145 COG0159 TrpA Tryptophan syntha 98.2 0.00012 2.6E-09 68.8 18.6 156 135-320 27-241 (265)
146 TIGR00735 hisF imidazoleglycer 98.2 6.6E-06 1.4E-10 77.6 10.2 77 239-318 158-235 (254)
147 PRK08649 inosine 5-monophospha 98.2 6.2E-06 1.3E-10 81.6 9.7 98 212-313 116-216 (368)
148 cd04731 HisF The cyclase subun 98.2 1.5E-05 3.3E-10 74.4 11.4 75 240-317 31-105 (243)
149 PRK00043 thiE thiamine-phospha 98.2 3.7E-05 7.9E-10 70.0 13.5 79 237-317 112-193 (212)
150 TIGR03128 RuMP_HxlA 3-hexulose 98.2 7E-05 1.5E-09 68.1 15.0 96 218-317 93-191 (206)
151 PLN02411 12-oxophytodienoate r 98.2 2.9E-05 6.3E-10 77.7 13.5 100 215-317 217-347 (391)
152 PRK02083 imidazole glycerol ph 98.2 2.1E-05 4.5E-10 74.1 11.5 76 239-317 33-108 (253)
153 PRK07028 bifunctional hexulose 98.1 0.00014 3E-09 73.8 18.2 95 218-317 98-195 (430)
154 cd04726 KGPDC_HPS 3-Keto-L-gul 98.1 0.00015 3.3E-09 65.5 16.7 94 218-316 94-190 (202)
155 COG0134 TrpC Indole-3-glycerol 98.1 6.1E-05 1.3E-09 70.3 13.6 167 143-318 70-242 (254)
156 PRK14114 1-(5-phosphoribosyl)- 98.1 2.2E-05 4.7E-10 73.5 10.6 100 216-318 62-229 (241)
157 PRK08883 ribulose-phosphate 3- 98.1 0.0004 8.7E-09 64.1 18.6 153 135-338 8-215 (220)
158 TIGR00735 hisF imidazoleglycer 98.1 3.4E-05 7.3E-10 72.8 11.8 77 238-317 31-108 (254)
159 PRK05848 nicotinate-nucleotide 98.1 5.3E-05 1.2E-09 72.0 12.2 89 217-316 169-261 (273)
160 PRK06806 fructose-bisphosphate 98.0 0.002 4.4E-08 61.6 22.9 108 237-348 153-278 (281)
161 PRK04128 1-(5-phosphoribosyl)- 98.0 4.4E-05 9.5E-10 70.9 11.3 102 216-318 61-217 (228)
162 PLN02460 indole-3-glycerol-pho 98.0 5.6E-05 1.2E-09 73.4 12.3 188 117-318 122-323 (338)
163 PRK04180 pyridoxal biosynthesi 98.0 0.0001 2.2E-09 69.7 13.6 120 142-311 27-147 (293)
164 TIGR00875 fsa_talC_mipB fructo 98.0 0.0012 2.6E-08 60.6 20.3 173 92-320 8-193 (213)
165 cd00958 DhnA Class I fructose- 98.0 0.00013 2.9E-09 67.7 14.3 84 223-317 117-219 (235)
166 TIGR01919 hisA-trpF 1-(5-phosp 98.0 4.2E-05 9.2E-10 71.6 10.7 101 216-318 62-231 (243)
167 PRK07226 fructose-bisphosphate 98.0 0.00021 4.6E-09 67.9 15.5 87 220-317 131-236 (267)
168 PF04481 DUF561: Protein of un 98.0 0.00033 7.2E-09 63.4 15.4 70 242-316 138-218 (242)
169 CHL00162 thiG thiamin biosynth 98.0 3.9E-05 8.5E-10 71.0 9.4 78 236-317 145-223 (267)
170 cd00564 TMP_TenI Thiamine mono 98.0 0.00011 2.4E-09 65.5 12.0 78 237-317 103-183 (196)
171 PRK13802 bifunctional indole-3 98.0 0.0001 2.2E-09 78.3 13.2 168 142-318 73-246 (695)
172 PF00290 Trp_syntA: Tryptophan 97.9 0.00037 8E-09 65.8 15.5 159 135-323 20-237 (259)
173 PF01791 DeoC: DeoC/LacD famil 97.9 7.3E-05 1.6E-09 69.6 10.5 96 217-316 111-234 (236)
174 PRK09427 bifunctional indole-3 97.9 0.00016 3.5E-09 73.5 13.7 212 118-354 54-271 (454)
175 PRK05283 deoxyribose-phosphate 97.9 0.00011 2.3E-09 69.1 11.3 96 215-316 116-226 (257)
176 PRK00748 1-(5-phosphoribosyl)- 97.9 0.00014 3.1E-09 67.3 11.7 75 240-317 34-108 (233)
177 cd04732 HisA HisA. Phosphorib 97.9 8.2E-05 1.8E-09 68.9 10.0 76 239-317 32-107 (234)
178 cd00429 RPE Ribulose-5-phospha 97.9 0.00077 1.7E-08 61.1 16.2 70 247-317 125-199 (211)
179 TIGR01859 fruc_bis_ald_ fructo 97.9 0.005 1.1E-07 59.0 22.2 108 237-348 153-279 (282)
180 PTZ00170 D-ribulose-5-phosphat 97.9 0.0013 2.8E-08 61.1 17.6 154 135-340 15-223 (228)
181 KOG0399 Glutamate synthase [Am 97.9 8.4E-05 1.8E-09 80.5 10.6 142 215-356 1080-1269(2142)
182 cd01573 modD_like ModD; Quinol 97.9 0.0011 2.3E-08 63.3 17.2 88 217-315 171-261 (272)
183 PRK06512 thiamine-phosphate py 97.8 0.00032 7E-09 64.8 13.1 95 220-317 100-197 (221)
184 PLN02334 ribulose-phosphate 3- 97.8 0.0012 2.6E-08 61.3 16.6 116 218-342 106-226 (229)
185 PRK04302 triosephosphate isome 97.8 0.0016 3.4E-08 60.2 17.0 95 220-317 107-207 (223)
186 PRK14024 phosphoribosyl isomer 97.8 0.00021 4.6E-09 66.8 11.1 74 240-317 36-109 (241)
187 cd00956 Transaldolase_FSA Tran 97.8 0.0039 8.4E-08 57.2 19.1 174 92-321 7-194 (211)
188 COG0269 SgbH 3-hexulose-6-phos 97.8 0.00049 1.1E-08 62.5 12.5 200 127-339 3-213 (217)
189 TIGR00734 hisAF_rel hisA/hisF 97.8 0.00013 2.8E-09 67.4 8.9 70 243-318 148-219 (221)
190 PRK06801 hypothetical protein; 97.8 0.0095 2.1E-07 57.1 21.9 109 237-348 156-283 (286)
191 COG0214 SNZ1 Pyridoxine biosyn 97.7 0.00056 1.2E-08 62.5 12.5 100 216-317 65-242 (296)
192 TIGR00693 thiE thiamine-phosph 97.7 0.00045 9.8E-09 62.2 12.2 80 236-317 103-185 (196)
193 PRK02615 thiamine-phosphate py 97.7 0.00057 1.2E-08 67.2 13.5 94 221-317 231-327 (347)
194 COG0036 Rpe Pentose-5-phosphat 97.7 0.0027 5.9E-08 58.0 16.8 153 135-338 12-217 (220)
195 PRK08745 ribulose-phosphate 3- 97.7 0.0049 1.1E-07 57.0 18.7 153 135-338 12-219 (223)
196 PRK07315 fructose-bisphosphate 97.7 0.016 3.5E-07 55.8 22.9 79 237-317 154-237 (293)
197 PRK05742 nicotinate-nucleotide 97.7 0.00043 9.4E-09 66.0 11.9 87 219-317 179-266 (277)
198 PRK07428 nicotinate-nucleotide 97.7 0.00048 1E-08 66.0 12.1 89 218-317 184-276 (288)
199 PRK12656 fructose-6-phosphate 97.7 0.01 2.2E-07 54.8 20.3 173 92-320 8-197 (222)
200 PRK12653 fructose-6-phosphate 97.7 0.01 2.3E-07 54.7 20.3 170 92-320 8-195 (220)
201 PRK12655 fructose-6-phosphate 97.7 0.01 2.2E-07 54.7 20.2 183 92-333 8-210 (220)
202 COG0352 ThiE Thiamine monophos 97.7 0.001 2.3E-08 60.8 13.3 95 220-317 94-191 (211)
203 PRK13586 1-(5-phosphoribosyl)- 97.7 0.00042 9E-09 64.5 10.8 99 217-318 62-224 (232)
204 PRK11840 bifunctional sulfur c 97.6 0.00041 8.9E-09 66.9 10.8 94 220-317 187-283 (326)
205 PRK01362 putative translaldola 97.6 0.018 3.8E-07 53.0 20.9 173 92-320 8-193 (214)
206 PLN02446 (5-phosphoribosyl)-5- 97.6 0.00034 7.3E-09 65.9 9.8 98 216-316 72-242 (262)
207 PRK08385 nicotinate-nucleotide 97.6 0.0033 7.2E-08 59.9 16.5 148 141-316 107-263 (278)
208 cd01572 QPRTase Quinolinate ph 97.6 0.00063 1.4E-08 64.7 11.6 88 218-316 170-258 (268)
209 cd00405 PRAI Phosphoribosylant 97.6 0.0078 1.7E-07 54.6 18.4 96 217-317 85-186 (203)
210 TIGR00078 nadC nicotinate-nucl 97.6 0.00092 2E-08 63.4 12.4 88 218-316 166-254 (265)
211 cd01568 QPRTase_NadC Quinolina 97.6 0.00088 1.9E-08 63.7 12.1 88 218-316 169-259 (269)
212 PLN02617 imidazole glycerol ph 97.6 0.00049 1.1E-08 71.4 10.7 48 269-318 470-518 (538)
213 PRK13585 1-(5-phosphoribosyl)- 97.6 0.0008 1.7E-08 62.7 11.2 75 239-316 35-109 (241)
214 PRK08072 nicotinate-nucleotide 97.5 0.0011 2.3E-08 63.3 11.8 88 218-316 176-264 (277)
215 PRK12376 putative translaldola 97.5 0.025 5.4E-07 52.7 20.5 177 92-320 13-207 (236)
216 TIGR01949 AroFGH_arch predicte 97.5 0.0013 2.8E-08 62.1 12.3 87 220-317 128-232 (258)
217 TIGR03572 WbuZ glycosyl amidat 97.5 0.0011 2.4E-08 61.4 11.5 75 240-317 34-108 (232)
218 PF09370 TIM-br_sig_trns: TIM- 97.5 0.0039 8.6E-08 58.4 14.9 195 75-315 15-249 (268)
219 COG0107 HisF Imidazoleglycerol 97.5 0.00065 1.4E-08 62.1 9.4 76 239-317 33-108 (256)
220 TIGR02129 hisA_euk phosphoribo 97.5 0.00039 8.5E-09 65.2 8.3 69 239-317 41-109 (253)
221 COG2022 ThiG Uncharacterized e 97.5 0.0008 1.7E-08 61.5 9.5 77 237-317 139-216 (262)
222 cd04727 pdxS PdxS is a subunit 97.5 0.01 2.2E-07 56.2 17.3 84 216-310 53-137 (283)
223 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00063 1.4E-08 63.1 9.1 75 238-316 31-106 (228)
224 TIGR00343 pyridoxal 5'-phospha 97.4 0.0039 8.4E-08 59.1 14.1 84 216-310 55-139 (287)
225 PF04131 NanE: Putative N-acet 97.4 0.0023 5.1E-08 57.1 12.0 88 216-312 20-119 (192)
226 TIGR00007 phosphoribosylformim 97.4 0.0018 3.8E-08 59.9 11.8 75 240-317 32-106 (230)
227 KOG1606 Stationary phase-induc 97.4 0.0029 6.2E-08 57.1 12.4 36 282-317 206-243 (296)
228 PRK13587 1-(5-phosphoribosyl)- 97.4 0.00085 1.8E-08 62.5 9.6 76 238-316 32-109 (234)
229 PRK09722 allulose-6-phosphate 97.4 0.021 4.6E-07 53.0 18.6 120 215-339 46-220 (229)
230 TIGR02129 hisA_euk phosphoribo 97.4 0.0018 3.8E-08 60.8 11.4 99 216-316 64-236 (253)
231 PRK08005 epimerase; Validated 97.4 0.02 4.3E-07 52.5 18.0 136 135-316 9-195 (210)
232 PF01729 QRPTase_C: Quinolinat 97.4 0.0017 3.7E-08 57.5 10.5 89 218-317 68-160 (169)
233 PRK13307 bifunctional formalde 97.4 0.016 3.4E-07 58.0 18.4 184 73-316 170-362 (391)
234 PF02581 TMP-TENI: Thiamine mo 97.4 0.0019 4.1E-08 57.6 10.8 77 236-315 102-180 (180)
235 PRK13397 3-deoxy-7-phosphohept 97.4 0.033 7.1E-07 52.3 19.3 203 63-315 3-222 (250)
236 PRK08185 hypothetical protein; 97.3 0.12 2.5E-06 49.6 23.2 109 237-348 149-277 (283)
237 PRK01033 imidazole glycerol ph 97.3 0.0024 5.2E-08 60.4 11.5 75 240-317 34-108 (258)
238 TIGR01334 modD putative molybd 97.3 0.015 3.3E-07 55.5 16.7 86 218-315 177-266 (277)
239 PRK06096 molybdenum transport 97.3 0.017 3.6E-07 55.3 16.8 85 218-314 178-266 (284)
240 PRK04169 geranylgeranylglycery 97.3 0.002 4.4E-08 59.8 10.2 65 248-317 153-218 (232)
241 PRK07998 gatY putative fructos 97.3 0.043 9.3E-07 52.5 19.4 107 237-348 153-278 (283)
242 PRK05581 ribulose-phosphate 3- 97.3 0.018 3.9E-07 52.6 16.5 97 219-317 101-203 (220)
243 cd04723 HisA_HisF Phosphoribos 97.3 0.0015 3.2E-08 60.8 9.2 74 239-316 38-111 (233)
244 PF00977 His_biosynth: Histidi 97.2 0.0015 3.2E-08 60.7 8.9 75 240-317 33-107 (229)
245 PRK06559 nicotinate-nucleotide 97.2 0.0042 9.2E-08 59.4 11.8 87 218-316 185-273 (290)
246 PRK12595 bifunctional 3-deoxy- 97.2 0.12 2.7E-06 51.2 22.5 210 57-315 98-325 (360)
247 PRK13586 1-(5-phosphoribosyl)- 97.2 0.0042 9.2E-08 57.8 11.3 74 240-317 34-107 (232)
248 PRK06106 nicotinate-nucleotide 97.2 0.0049 1.1E-07 58.8 11.9 87 218-316 182-270 (281)
249 TIGR01182 eda Entner-Doudoroff 97.2 0.0027 5.9E-08 57.8 9.7 81 216-311 46-127 (204)
250 PF00834 Ribul_P_3_epim: Ribul 97.1 0.0092 2E-07 54.3 12.5 137 135-316 8-198 (201)
251 PRK08227 autoinducer 2 aldolas 97.1 0.0087 1.9E-07 56.6 12.7 83 220-316 132-230 (264)
252 TIGR02134 transald_staph trans 97.1 0.1 2.2E-06 48.6 19.4 177 92-320 13-207 (236)
253 PRK09016 quinolinate phosphori 97.1 0.0057 1.2E-07 58.7 11.1 87 218-316 197-284 (296)
254 PRK06543 nicotinate-nucleotide 97.0 0.0075 1.6E-07 57.5 11.5 87 218-316 181-269 (281)
255 PLN02898 HMP-P kinase/thiamin- 97.0 0.01 2.3E-07 61.4 13.4 111 221-340 381-497 (502)
256 PRK07896 nicotinate-nucleotide 97.0 0.0073 1.6E-07 57.9 11.2 87 218-316 188-278 (289)
257 PRK03512 thiamine-phosphate py 97.0 0.017 3.6E-07 53.0 13.3 80 236-317 109-191 (211)
258 TIGR01769 GGGP geranylgeranylg 97.0 0.005 1.1E-07 56.1 9.6 66 242-312 140-205 (205)
259 PRK06978 nicotinate-nucleotide 97.0 0.0086 1.9E-07 57.4 11.5 87 218-316 194-281 (294)
260 PRK14114 1-(5-phosphoribosyl)- 97.0 0.0049 1.1E-07 57.7 9.5 73 240-316 34-106 (241)
261 PLN02446 (5-phosphoribosyl)-5- 96.9 0.0076 1.7E-07 56.9 10.6 71 239-317 46-116 (262)
262 cd02812 PcrB_like PcrB_like pr 96.9 0.0045 9.8E-08 57.0 8.8 69 242-317 141-209 (219)
263 PRK12290 thiE thiamine-phospha 96.9 0.016 3.4E-07 58.4 13.3 95 222-317 292-397 (437)
264 PF01884 PcrB: PcrB family; I 96.9 0.0047 1E-07 57.1 8.4 66 247-317 151-216 (230)
265 TIGR01919 hisA-trpF 1-(5-phosp 96.9 0.006 1.3E-07 57.2 9.3 72 241-316 36-107 (243)
266 PF03437 BtpA: BtpA family; I 96.9 0.055 1.2E-06 51.0 15.5 70 240-317 162-232 (254)
267 PRK06552 keto-hydroxyglutarate 96.8 0.012 2.5E-07 54.1 10.8 81 216-311 51-135 (213)
268 PRK07709 fructose-bisphosphate 96.8 0.36 7.9E-06 46.3 21.1 107 237-348 156-282 (285)
269 cd00947 TBP_aldolase_IIB Tagat 96.8 0.35 7.6E-06 46.2 20.9 107 237-347 148-274 (276)
270 TIGR00259 thylakoid_BtpA membr 96.8 0.01 2.2E-07 55.9 10.3 70 240-316 161-231 (257)
271 TIGR01768 GGGP-family geranylg 96.8 0.0084 1.8E-07 55.3 9.4 66 248-317 148-213 (223)
272 PRK12738 kbaY tagatose-bisphos 96.8 0.51 1.1E-05 45.3 21.6 107 237-348 155-281 (286)
273 PF01081 Aldolase: KDPG and KH 96.8 0.0098 2.1E-07 53.9 9.4 81 216-311 46-127 (196)
274 cd00452 KDPG_aldolase KDPG and 96.7 0.015 3.3E-07 52.2 10.4 81 216-311 42-123 (190)
275 cd00381 IMPDH IMPDH: The catal 96.7 0.02 4.3E-07 56.0 11.9 67 240-312 97-163 (325)
276 PRK08999 hypothetical protein; 96.7 0.0078 1.7E-07 58.2 9.0 77 236-315 233-311 (312)
277 COG3010 NanE Putative N-acetyl 96.7 0.067 1.5E-06 48.3 14.0 87 216-310 54-152 (229)
278 PRK06015 keto-hydroxyglutarate 96.7 0.012 2.6E-07 53.5 9.5 81 216-311 42-123 (201)
279 PRK13813 orotidine 5'-phosphat 96.7 0.0096 2.1E-07 54.5 8.8 118 215-339 42-213 (215)
280 KOG4201 Anthranilate synthase 96.6 0.018 3.9E-07 52.2 9.9 97 217-318 175-272 (289)
281 PRK05835 fructose-bisphosphate 96.6 0.35 7.7E-06 46.8 19.5 109 237-348 155-304 (307)
282 PRK06852 aldolase; Validated 96.6 0.043 9.3E-07 53.0 12.9 92 220-316 159-269 (304)
283 TIGR01858 tag_bisphos_ald clas 96.6 0.63 1.4E-05 44.6 20.6 107 237-348 153-279 (282)
284 PRK09195 gatY tagatose-bisphos 96.5 0.8 1.7E-05 43.9 22.8 107 237-348 155-281 (284)
285 PRK08091 ribulose-phosphate 3- 96.5 0.13 2.7E-06 47.8 15.2 95 218-315 107-210 (228)
286 cd04729 NanE N-acetylmannosami 96.5 0.13 2.9E-06 47.1 15.3 90 218-312 50-150 (219)
287 cd04728 ThiG Thiazole synthase 96.5 0.023 4.9E-07 52.9 10.0 107 127-257 91-205 (248)
288 PRK11750 gltB glutamate syntha 96.5 0.023 5E-07 64.6 11.7 119 241-359 602-734 (1485)
289 PLN02716 nicotinate-nucleotide 96.5 0.042 9.2E-07 53.0 12.0 95 218-316 188-294 (308)
290 PRK14057 epimerase; Provisiona 96.5 0.17 3.6E-06 47.7 15.7 77 238-316 144-225 (254)
291 CHL00200 trpA tryptophan synth 96.5 0.054 1.2E-06 51.4 12.6 41 217-257 191-232 (263)
292 PRK12858 tagatose 1,6-diphosph 96.4 0.012 2.6E-07 57.8 8.3 73 242-317 190-281 (340)
293 PRK06843 inosine 5-monophospha 96.4 0.014 3E-07 58.5 8.8 67 240-312 156-222 (404)
294 PF01116 F_bP_aldolase: Fructo 96.4 0.58 1.3E-05 45.0 19.5 110 237-348 155-284 (287)
295 PRK01130 N-acetylmannosamine-6 96.4 0.14 3.1E-06 46.9 15.0 91 217-312 45-146 (221)
296 COG0106 HisA Phosphoribosylfor 96.4 0.028 6.1E-07 52.2 10.0 74 239-315 34-107 (241)
297 PRK08610 fructose-bisphosphate 96.4 0.61 1.3E-05 44.8 19.4 107 237-348 156-282 (286)
298 PLN02591 tryptophan synthase 96.4 0.064 1.4E-06 50.5 12.4 41 217-257 178-219 (250)
299 cd02931 ER_like_FMN Enoate red 96.3 0.14 3.1E-06 51.1 15.6 216 65-313 4-273 (382)
300 TIGR00736 nifR3_rel_arch TIM-b 96.3 0.046 1E-06 50.8 11.2 84 126-256 135-220 (231)
301 PLN02617 imidazole glycerol ph 96.3 0.019 4.2E-07 59.7 9.5 76 240-317 271-359 (538)
302 COG0157 NadC Nicotinate-nucleo 96.3 0.044 9.6E-07 51.8 11.0 88 218-316 176-266 (280)
303 cd03319 L-Ala-DL-Glu_epimerase 96.3 0.32 6.9E-06 47.1 17.3 128 128-315 126-261 (316)
304 PRK05718 keto-hydroxyglutarate 96.3 0.038 8.2E-07 50.7 10.1 81 216-311 53-134 (212)
305 PRK09250 fructose-bisphosphate 96.2 0.06 1.3E-06 52.7 11.8 96 222-317 186-323 (348)
306 TIGR00167 cbbA ketose-bisphosp 96.2 0.95 2.1E-05 43.5 20.0 108 237-348 158-285 (288)
307 TIGR03569 NeuB_NnaB N-acetylne 96.2 0.58 1.3E-05 45.8 18.8 229 76-347 1-260 (329)
308 PRK09140 2-dehydro-3-deoxy-6-p 96.2 0.058 1.3E-06 49.3 11.1 81 216-311 48-130 (206)
309 PRK00208 thiG thiazole synthas 96.2 0.038 8.2E-07 51.5 9.9 107 127-257 91-205 (250)
310 PF00478 IMPDH: IMP dehydrogen 96.2 0.041 8.9E-07 54.2 10.6 67 239-312 110-177 (352)
311 PF03932 CutC: CutC family; I 96.2 0.065 1.4E-06 48.7 11.1 126 133-311 66-198 (201)
312 PRK07114 keto-hydroxyglutarate 96.2 0.03 6.5E-07 51.7 8.9 81 216-311 53-138 (222)
313 PF04898 Glu_syn_central: Glut 96.1 0.071 1.5E-06 51.0 11.6 119 240-358 146-279 (287)
314 KOG2335 tRNA-dihydrouridine sy 96.1 0.077 1.7E-06 51.8 11.9 91 124-256 140-233 (358)
315 TIGR02320 PEP_mutase phosphoen 96.1 0.53 1.2E-05 45.2 17.4 195 76-318 9-246 (285)
316 cd00331 IGPS Indole-3-glycerol 96.1 0.059 1.3E-06 49.3 10.5 72 239-316 34-105 (217)
317 TIGR01302 IMP_dehydrog inosine 96.1 0.027 5.8E-07 57.6 8.9 252 45-312 3-293 (450)
318 COG1830 FbaB DhnA-type fructos 96.0 0.1 2.2E-06 49.1 11.9 87 220-317 135-242 (265)
319 PRK00230 orotidine 5'-phosphat 96.0 0.069 1.5E-06 49.6 10.8 44 217-260 43-91 (230)
320 PTZ00314 inosine-5'-monophosph 95.9 0.035 7.6E-07 57.4 9.1 247 45-312 19-310 (495)
321 PRK03170 dihydrodipicolinate s 95.9 1.6 3.5E-05 41.8 19.9 182 75-316 6-209 (292)
322 PLN02274 inosine-5'-monophosph 95.9 0.038 8.3E-07 57.2 9.2 250 44-312 22-317 (505)
323 COG0135 TrpF Phosphoribosylant 95.8 0.93 2E-05 41.4 17.0 95 213-315 83-186 (208)
324 PRK11572 copper homeostasis pr 95.8 0.22 4.8E-06 46.7 13.0 126 133-312 67-198 (248)
325 cd04739 DHOD_like Dihydroorota 95.8 0.23 4.9E-06 48.6 13.8 187 74-303 99-304 (325)
326 PRK12737 gatY tagatose-bisphos 95.8 2 4.3E-05 41.3 22.9 107 237-348 155-281 (284)
327 PF01207 Dus: Dihydrouridine s 95.8 0.049 1.1E-06 52.9 9.0 90 123-256 120-213 (309)
328 cd02810 DHOD_DHPD_FMN Dihydroo 95.7 0.12 2.7E-06 49.3 11.5 155 74-256 98-272 (289)
329 PRK09517 multifunctional thiam 95.7 0.18 3.9E-06 55.0 13.9 80 237-317 109-199 (755)
330 PLN02417 dihydrodipicolinate s 95.7 0.11 2.5E-06 49.6 11.0 92 242-336 28-124 (280)
331 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 0.13 2.7E-06 49.6 11.0 93 242-337 27-124 (294)
332 PRK13398 3-deoxy-7-phosphohept 95.6 2.2 4.7E-05 40.6 19.8 192 75-316 28-235 (266)
333 cd00951 KDGDH 5-dehydro-4-deox 95.6 0.13 2.7E-06 49.5 10.9 91 242-336 27-122 (289)
334 TIGR02313 HpaI-NOT-DapA 2,4-di 95.6 2.1 4.5E-05 41.2 19.4 182 75-316 5-210 (294)
335 PRK03620 5-dehydro-4-deoxygluc 95.6 0.12 2.7E-06 49.9 11.0 92 242-337 34-130 (303)
336 TIGR01305 GMP_reduct_1 guanosi 95.6 0.14 3E-06 50.0 10.9 67 240-312 110-178 (343)
337 cd04733 OYE_like_2_FMN Old yel 95.5 0.58 1.3E-05 45.9 15.7 214 65-313 4-257 (338)
338 cd04726 KGPDC_HPS 3-Keto-L-gul 95.5 0.47 1E-05 42.6 13.9 87 217-312 41-133 (202)
339 PRK07807 inosine 5-monophospha 95.5 0.062 1.4E-06 55.3 9.1 244 44-312 13-296 (479)
340 PF05690 ThiG: Thiazole biosyn 95.5 0.087 1.9E-06 48.7 8.8 41 216-256 163-204 (247)
341 PRK08673 3-deoxy-7-phosphohept 95.5 0.82 1.8E-05 44.9 16.1 127 217-346 190-333 (335)
342 PRK07107 inosine 5-monophospha 95.5 0.13 2.9E-06 53.2 11.2 68 240-312 245-312 (502)
343 PRK10550 tRNA-dihydrouridine s 95.4 0.21 4.6E-06 48.5 11.9 88 126-256 134-224 (312)
344 cd00408 DHDPS-like Dihydrodipi 95.4 0.18 3.8E-06 48.0 11.2 92 242-336 24-120 (281)
345 PRK13957 indole-3-glycerol-pho 95.4 0.097 2.1E-06 49.1 9.1 70 240-315 65-134 (247)
346 TIGR00734 hisAF_rel hisA/hisF 95.4 0.084 1.8E-06 48.7 8.6 71 240-316 40-112 (221)
347 CHL00162 thiG thiamin biosynth 95.4 0.099 2.1E-06 48.9 8.9 41 216-256 177-218 (267)
348 cd00952 CHBPH_aldolase Trans-o 95.4 0.15 3.3E-06 49.4 10.8 92 242-336 35-131 (309)
349 PRK13306 ulaD 3-keto-L-gulonat 95.4 0.068 1.5E-06 49.2 7.9 97 237-340 117-213 (216)
350 PRK05096 guanosine 5'-monophos 95.4 0.16 3.5E-06 49.5 10.7 66 240-312 111-179 (346)
351 KOG3111 D-ribulose-5-phosphate 95.3 0.91 2E-05 40.8 14.4 60 273-340 160-219 (224)
352 TIGR01306 GMP_reduct_2 guanosi 95.3 0.22 4.7E-06 48.6 11.5 77 229-312 83-165 (321)
353 COG0329 DapA Dihydrodipicolina 95.2 0.21 4.5E-06 48.3 11.0 92 242-336 31-127 (299)
354 COG2876 AroA 3-deoxy-D-arabino 95.2 2.9 6.3E-05 39.4 18.8 93 217-312 142-249 (286)
355 TIGR01303 IMP_DH_rel_1 IMP deh 95.1 0.1 2.2E-06 53.7 9.2 246 44-313 12-295 (475)
356 cd00439 Transaldolase Transald 95.1 1.8 3.8E-05 40.9 16.8 97 219-319 131-241 (252)
357 PRK12857 fructose-1,6-bisphosp 95.1 3.3 7.1E-05 39.8 20.7 107 237-348 155-281 (284)
358 TIGR00262 trpA tryptophan synt 95.1 0.5 1.1E-05 44.6 13.2 199 24-257 11-228 (256)
359 cd00950 DHDPS Dihydrodipicolin 95.1 3.2 7E-05 39.4 19.7 182 75-316 5-208 (284)
360 cd00516 PRTase_typeII Phosphor 95.1 0.26 5.6E-06 47.0 11.2 94 218-316 170-271 (281)
361 COG0800 Eda 2-keto-3-deoxy-6-p 95.1 0.08 1.7E-06 48.2 7.2 80 216-310 51-131 (211)
362 PRK09196 fructose-1,6-bisphosp 95.1 3.1 6.6E-05 41.1 18.6 112 237-349 173-327 (347)
363 COG3142 CutC Uncharacterized p 95.0 0.45 9.7E-06 43.8 11.9 123 133-308 67-196 (241)
364 cd04735 OYE_like_4_FMN Old yel 95.0 3.1 6.7E-05 41.1 19.0 212 65-315 4-258 (353)
365 PRK07565 dihydroorotate dehydr 95.0 0.33 7.2E-06 47.6 12.0 94 218-313 91-198 (334)
366 COG2022 ThiG Uncharacterized e 95.0 0.28 6E-06 45.3 10.4 41 216-256 170-211 (262)
367 cd00377 ICL_PEPM Members of th 95.0 2.4 5.3E-05 39.6 17.2 187 77-318 10-232 (243)
368 TIGR00683 nanA N-acetylneurami 95.0 0.26 5.7E-06 47.3 11.0 92 242-336 27-124 (290)
369 PRK13111 trpA tryptophan synth 94.9 0.52 1.1E-05 44.6 12.7 41 216-257 188-229 (258)
370 cd03315 MLE_like Muconate lact 94.9 1.1 2.3E-05 42.3 15.0 118 136-312 84-210 (265)
371 TIGR03569 NeuB_NnaB N-acetylne 94.9 0.63 1.4E-05 45.6 13.5 139 135-303 12-153 (329)
372 TIGR02319 CPEP_Pphonmut carbox 94.9 3.1 6.7E-05 40.1 18.1 66 242-318 171-239 (294)
373 TIGR03586 PseI pseudaminic aci 94.9 4.2 9E-05 39.9 21.0 126 216-347 123-259 (327)
374 TIGR03249 KdgD 5-dehydro-4-deo 94.9 0.26 5.6E-06 47.5 10.8 92 242-337 32-128 (296)
375 COG0042 tRNA-dihydrouridine sy 94.9 0.21 4.6E-06 48.8 10.3 42 215-256 184-228 (323)
376 TIGR01037 pyrD_sub1_fam dihydr 94.9 0.14 3.1E-06 49.2 9.0 108 123-256 155-263 (300)
377 PRK11840 bifunctional sulfur c 94.9 0.13 2.9E-06 49.8 8.5 162 65-256 74-278 (326)
378 TIGR03249 KdgD 5-dehydro-4-deo 94.8 4 8.6E-05 39.2 20.3 183 75-316 10-213 (296)
379 cd00408 DHDPS-like Dihydrodipi 94.8 3.8 8.2E-05 38.8 22.3 181 76-316 3-205 (281)
380 cd02940 DHPD_FMN Dihydropyrimi 94.8 0.19 4E-06 48.5 9.5 112 125-257 168-282 (299)
381 PRK05567 inosine 5'-monophosph 94.8 0.14 3E-06 52.9 9.0 247 44-312 9-297 (486)
382 cd06557 KPHMT-like Ketopantoat 94.7 1 2.3E-05 42.4 14.1 48 240-299 162-210 (254)
383 cd03316 MR_like Mandelate race 94.7 0.42 9.1E-06 47.0 12.1 123 137-312 139-270 (357)
384 cd04740 DHOD_1B_like Dihydroor 94.7 0.35 7.7E-06 46.4 11.3 153 74-256 89-260 (296)
385 PF00701 DHDPS: Dihydrodipicol 94.7 0.25 5.5E-06 47.2 10.1 90 242-334 28-122 (289)
386 cd00954 NAL N-Acetylneuraminic 94.7 0.32 7E-06 46.6 10.8 92 242-336 27-124 (288)
387 TIGR00674 dapA dihydrodipicoli 94.7 0.35 7.6E-06 46.2 11.0 92 242-336 25-121 (285)
388 PRK05286 dihydroorotate dehydr 94.6 0.051 1.1E-06 53.6 5.3 104 126-256 212-318 (344)
389 cd00950 DHDPS Dihydrodipicolin 94.6 0.35 7.7E-06 46.1 10.8 92 242-336 27-123 (284)
390 TIGR02317 prpB methylisocitrat 94.6 4.2 9.1E-05 39.1 17.9 189 76-318 13-235 (285)
391 cd04738 DHOD_2_like Dihydrooro 94.5 0.12 2.6E-06 50.6 7.5 104 126-256 203-309 (327)
392 PRK08318 dihydropyrimidine deh 94.5 0.12 2.7E-06 52.2 7.9 112 125-257 168-283 (420)
393 PRK10415 tRNA-dihydrouridine s 94.5 0.5 1.1E-05 46.2 11.8 42 215-256 181-224 (321)
394 COG2089 SpsE Sialic acid synth 94.5 2.2 4.7E-05 41.5 15.6 239 66-347 2-272 (347)
395 TIGR00742 yjbN tRNA dihydrouri 94.5 0.41 8.9E-06 46.7 11.1 95 125-256 123-223 (318)
396 PRK13396 3-deoxy-7-phosphohept 94.5 1.3 2.8E-05 43.8 14.5 127 217-346 198-342 (352)
397 PRK04147 N-acetylneuraminate l 94.4 0.42 9E-06 45.9 10.9 91 242-335 30-126 (293)
398 TIGR00737 nifR3_yhdG putative 94.4 0.43 9.4E-06 46.4 11.2 42 215-256 179-222 (319)
399 COG0159 TrpA Tryptophan syntha 94.3 0.23 4.9E-06 47.0 8.5 166 69-256 50-233 (265)
400 PRK07259 dihydroorotate dehydr 94.3 0.48 1E-05 45.6 11.0 154 73-256 90-263 (301)
401 PRK03170 dihydrodipicolinate s 94.2 0.47 1E-05 45.5 10.9 92 242-336 28-124 (292)
402 PRK07084 fructose-bisphosphate 94.2 2.4 5.1E-05 41.4 15.5 81 237-318 164-274 (321)
403 PRK05458 guanosine 5'-monophos 94.2 0.49 1.1E-05 46.3 10.9 67 240-312 100-168 (326)
404 PRK00311 panB 3-methyl-2-oxobu 94.2 1.7 3.7E-05 41.2 14.3 140 78-290 17-203 (264)
405 PF04309 G3P_antiterm: Glycero 94.2 0.026 5.6E-07 50.1 1.8 145 127-317 21-174 (175)
406 cd02801 DUS_like_FMN Dihydrour 94.1 0.59 1.3E-05 42.8 10.9 42 215-256 170-213 (231)
407 cd00945 Aldolase_Class_I Class 93.9 0.69 1.5E-05 40.8 10.7 81 242-336 19-108 (201)
408 TIGR00674 dapA dihydrodipicoli 93.9 6.2 0.00013 37.6 20.9 183 75-316 3-206 (285)
409 COG0167 PyrD Dihydroorotate de 93.9 0.41 8.8E-06 46.4 9.5 174 91-299 109-304 (310)
410 PRK11320 prpB 2-methylisocitra 93.8 6.8 0.00015 37.8 19.1 180 93-318 26-240 (292)
411 PLN02411 12-oxophytodienoate r 93.7 3.3 7.2E-05 41.6 16.1 228 64-315 14-283 (391)
412 TIGR03151 enACPred_II putative 93.7 0.97 2.1E-05 43.8 11.9 42 216-257 149-191 (307)
413 cd00951 KDGDH 5-dehydro-4-deox 93.7 6.8 0.00015 37.5 21.9 183 75-316 5-208 (289)
414 COG0176 MipB Transaldolase [Ca 93.7 6.1 0.00013 36.9 17.6 99 220-322 108-210 (239)
415 PRK03620 5-dehydro-4-deoxygluc 93.6 7.2 0.00016 37.6 20.5 183 75-316 12-215 (303)
416 COG1646 Predicted phosphate-bi 93.6 0.24 5.2E-06 45.7 6.9 62 248-316 163-224 (240)
417 PLN02979 glycolate oxidase 93.5 0.72 1.6E-05 45.7 10.6 42 269-313 211-252 (366)
418 PRK11320 prpB 2-methylisocitra 93.4 0.4 8.7E-06 46.2 8.6 83 228-312 16-113 (292)
419 cd02911 arch_FMN Archeal FMN-b 93.4 0.86 1.9E-05 42.4 10.6 40 215-256 180-220 (233)
420 TIGR02317 prpB methylisocitrat 93.3 0.41 8.8E-06 46.0 8.5 84 228-313 12-109 (285)
421 cd02809 alpha_hydroxyacid_oxid 93.3 0.95 2E-05 43.6 11.1 87 221-312 108-200 (299)
422 cd00377 ICL_PEPM Members of th 93.2 0.78 1.7E-05 43.0 10.1 98 218-315 59-183 (243)
423 PF00290 Trp_syntA: Tryptophan 93.2 0.44 9.4E-06 45.1 8.4 40 217-257 187-227 (259)
424 TIGR03128 RuMP_HxlA 3-hexulose 93.2 2.1 4.6E-05 38.5 12.7 89 216-313 39-134 (206)
425 PF00701 DHDPS: Dihydrodipicol 93.2 8 0.00017 36.8 19.3 182 76-317 7-210 (289)
426 PTZ00411 transaldolase-like pr 93.1 1.1 2.5E-05 43.8 11.3 101 216-320 146-263 (333)
427 COG0329 DapA Dihydrodipicolina 93.1 9 0.00019 37.0 23.4 183 75-315 9-212 (299)
428 COG2070 Dioxygenases related t 93.0 1.5 3.2E-05 43.1 12.1 170 25-257 39-214 (336)
429 TIGR03586 PseI pseudaminic aci 93.0 2.5 5.5E-05 41.4 13.6 147 135-311 13-166 (327)
430 PRK07455 keto-hydroxyglutarate 93.0 1.4 3E-05 39.6 11.0 79 218-311 52-131 (187)
431 PLN02535 glycolate oxidase 92.9 0.84 1.8E-05 45.3 10.3 91 220-313 115-252 (364)
432 COG4981 Enoyl reductase domain 92.8 5.5 0.00012 41.3 15.8 37 282-318 212-259 (717)
433 cd04741 DHOD_1A_like Dihydroor 92.8 0.92 2E-05 43.7 10.2 112 124-257 156-273 (294)
434 cd01571 NAPRTase_B Nicotinate 92.8 0.86 1.9E-05 44.1 9.9 94 218-317 172-278 (302)
435 COG0434 SgcQ Predicted TIM-bar 92.7 0.41 8.9E-06 44.4 7.1 65 245-317 173-237 (263)
436 PLN02460 indole-3-glycerol-pho 92.7 0.45 9.7E-06 46.6 7.8 90 216-314 168-260 (338)
437 PRK13802 bifunctional indole-3 92.7 0.69 1.5E-05 49.7 9.9 89 216-313 99-188 (695)
438 PLN02493 probable peroxisomal 92.7 1 2.2E-05 44.7 10.5 42 269-313 212-253 (367)
439 PRK12309 transaldolase/EF-hand 92.7 9 0.00019 38.5 17.2 99 216-319 140-256 (391)
440 PRK13523 NADPH dehydrogenase N 92.6 0.93 2E-05 44.6 10.1 95 120-255 202-304 (337)
441 PLN02858 fructose-bisphosphate 92.6 19 0.00041 42.2 22.0 110 238-348 1251-1375(1378)
442 COG0134 TrpC Indole-3-glycerol 92.6 0.35 7.6E-06 45.4 6.7 93 216-317 95-188 (254)
443 COG5564 Predicted TIM-barrel e 92.6 1.8 3.8E-05 39.8 10.8 78 236-313 163-253 (276)
444 PF03102 NeuB: NeuB family; I 92.5 1.1 2.3E-05 42.1 9.8 75 218-303 59-133 (241)
445 COG1954 GlpP Glycerol-3-phosph 92.4 2.3 5E-05 37.5 11.1 42 217-258 133-175 (181)
446 PRK00278 trpC indole-3-glycero 92.4 1.6 3.4E-05 41.4 11.0 72 239-316 73-144 (260)
447 TIGR01769 GGGP geranylgeranylg 92.4 1.4 3.1E-05 40.2 10.2 40 216-255 164-204 (205)
448 PF03932 CutC: CutC family; I 92.3 0.98 2.1E-05 41.1 9.1 74 236-313 7-93 (201)
449 PRK09427 bifunctional indole-3 92.3 0.6 1.3E-05 47.8 8.5 90 216-314 98-188 (454)
450 PLN02334 ribulose-phosphate 3- 92.3 6.2 0.00014 36.3 14.7 92 216-314 53-148 (229)
451 PRK04161 tagatose 1,6-diphosph 92.3 2 4.4E-05 41.7 11.6 67 283-357 242-315 (329)
452 TIGR01036 pyrD_sub2 dihydrooro 92.1 0.28 6.1E-06 48.2 5.7 104 126-256 211-317 (335)
453 TIGR02319 CPEP_Pphonmut carbox 92.0 0.69 1.5E-05 44.6 8.1 84 228-313 15-113 (294)
454 PRK12399 tagatose 1,6-diphosph 91.9 2.2 4.8E-05 41.4 11.4 67 283-357 240-313 (324)
455 cd06556 ICL_KPHMT Members of t 91.9 0.74 1.6E-05 43.1 8.0 84 228-312 11-109 (240)
456 cd06556 ICL_KPHMT Members of t 91.9 5.5 0.00012 37.3 13.8 39 240-290 160-198 (240)
457 PF01680 SOR_SNZ: SOR/SNZ fami 91.9 1.9 4.2E-05 38.3 9.9 82 217-309 60-142 (208)
458 cd03174 DRE_TIM_metallolyase D 91.7 7.6 0.00017 36.1 14.9 155 136-338 16-188 (265)
459 PRK11815 tRNA-dihydrouridine s 91.7 2.1 4.5E-05 42.0 11.3 43 213-256 189-233 (333)
460 cd00957 Transaldolase_TalAB Tr 91.6 2.2 4.8E-05 41.5 11.1 100 216-320 134-251 (313)
461 PRK05269 transaldolase B; Prov 91.5 14 0.0003 36.1 16.6 100 216-320 136-253 (318)
462 PRK11572 copper homeostasis pr 91.5 1.2 2.7E-05 41.7 8.9 74 236-313 8-94 (248)
463 PF13714 PEP_mutase: Phosphoen 91.4 1.2 2.6E-05 41.6 8.9 85 228-314 8-107 (238)
464 TIGR01768 GGGP-family geranylg 91.4 0.47 1E-05 43.9 6.0 43 215-257 165-209 (223)
465 cd02933 OYE_like_FMN Old yello 91.3 2.8 6E-05 41.3 11.7 42 215-256 272-314 (338)
466 TIGR00222 panB 3-methyl-2-oxob 91.3 5.6 0.00012 37.7 13.2 48 240-299 164-212 (263)
467 cd02922 FCB2_FMN Flavocytochro 91.3 2.5 5.4E-05 41.7 11.3 82 229-313 118-242 (344)
468 cd02812 PcrB_like PcrB_like pr 91.2 0.47 1E-05 43.8 5.8 42 216-257 162-205 (219)
469 PF04309 G3P_antiterm: Glycero 91.1 0.49 1.1E-05 42.1 5.6 41 217-257 129-170 (175)
470 PRK13125 trpA tryptophan synth 91.1 2.9 6.3E-05 39.0 11.2 41 217-257 173-215 (244)
471 PRK12346 transaldolase A; Prov 91.1 2.9 6.3E-05 40.7 11.3 102 215-320 134-252 (316)
472 TIGR00874 talAB transaldolase. 91.0 3 6.5E-05 40.6 11.4 101 216-320 134-251 (317)
473 PRK04147 N-acetylneuraminate l 91.0 15 0.00032 35.2 19.1 179 75-314 8-209 (293)
474 COG0352 ThiE Thiamine monophos 91.0 5.2 0.00011 36.7 12.4 44 213-256 143-186 (211)
475 PRK05581 ribulose-phosphate 3- 91.0 9.7 0.00021 34.4 14.4 125 136-313 13-139 (220)
476 cd00564 TMP_TenI Thiamine mono 90.6 8.8 0.00019 33.6 13.4 43 215-257 137-179 (196)
477 COG1954 GlpP Glycerol-3-phosph 90.5 1.3 2.9E-05 39.0 7.5 88 218-317 86-178 (181)
478 PLN02424 ketopantoate hydroxym 90.4 8.6 0.00019 37.6 13.9 50 240-301 186-236 (332)
479 PRK12457 2-dehydro-3-deoxyphos 90.4 2.9 6.3E-05 39.8 10.3 95 217-313 120-238 (281)
480 COG2185 Sbm Methylmalonyl-CoA 90.2 4 8.7E-05 35.0 10.2 85 218-310 30-120 (143)
481 PF00218 IGPS: Indole-3-glycer 90.1 3.7 8E-05 38.8 10.9 71 240-316 72-142 (254)
482 TIGR01521 FruBisAldo_II_B fruc 90.1 5.8 0.00013 39.1 12.6 112 237-349 171-325 (347)
483 COG0826 Collagenase and relate 90.1 12 0.00026 37.0 15.0 162 73-292 4-172 (347)
484 cd02811 IDI-2_FMN Isopentenyl- 90.1 4.1 8.8E-05 39.9 11.6 96 216-313 99-210 (326)
485 TIGR01361 DAHP_synth_Bsub phos 90.0 4.9 0.00011 38.1 11.7 97 217-316 122-233 (260)
486 cd02803 OYE_like_FMN_family Ol 89.9 4.1 8.9E-05 39.5 11.5 42 215-256 268-311 (327)
487 COG2513 PrpB PEP phosphonomuta 89.8 1.6 3.6E-05 41.6 8.2 84 228-313 17-114 (289)
488 PRK00043 thiE thiamine-phospha 89.7 11 0.00023 33.8 13.5 42 216-257 147-189 (212)
489 COG3684 LacD Tagatose-1,6-bisp 89.7 5.6 0.00012 37.5 11.3 123 219-356 148-296 (306)
490 PRK06512 thiamine-phosphate py 89.6 2.5 5.4E-05 39.0 9.2 80 218-314 61-140 (221)
491 PRK04169 geranylgeranylglycery 89.5 0.79 1.7E-05 42.6 5.8 42 216-257 171-214 (232)
492 cd06557 KPHMT-like Ketopantoat 89.5 2.4 5.2E-05 40.0 9.1 89 220-311 4-110 (254)
493 cd04734 OYE_like_3_FMN Old yel 89.5 4.4 9.6E-05 39.9 11.4 41 215-255 272-314 (343)
494 TIGR02321 Pphn_pyruv_hyd phosp 89.3 21 0.00046 34.3 19.1 69 242-318 172-241 (290)
495 TIGR02321 Pphn_pyruv_hyd phosp 89.3 2 4.3E-05 41.4 8.6 84 228-313 14-111 (290)
496 KOG0134 NADH:flavin oxidoreduc 89.3 5.4 0.00012 39.9 11.6 102 215-317 226-353 (400)
497 PLN02495 oxidoreductase, actin 89.2 26 0.00056 35.2 16.6 192 74-299 113-333 (385)
498 TIGR02708 L_lactate_ox L-lacta 89.2 4.7 0.0001 40.2 11.3 42 269-313 216-257 (367)
499 PRK01222 N-(5'-phosphoribosyl) 89.1 17 0.00038 33.1 19.9 90 216-315 88-186 (210)
500 cd04737 LOX_like_FMN L-Lactate 89.1 4.1 8.9E-05 40.3 10.8 82 228-312 124-249 (351)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=7.2e-92 Score=646.81 Aligned_cols=360 Identities=72% Similarity=1.112 Sum_probs=344.5
Q ss_pred CCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeeccccccc
Q 017434 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 86 (371)
Q Consensus 7 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~ 86 (371)
++|++|||+.|+++||+.+|||+.|||+|+.|+++|+++|.||.|+||+|+|++.+|+||+++|.++++||++||++++.
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017434 87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (371)
Q Consensus 87 ~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~ 165 (371)
+.|||||.+++|+|.++|++|++|+++++|+|||.+++| +.+|||||+++|++.++++++|||++||++|++|+|+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHH
Q 017434 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a 245 (371)
|+|+.|++|+|.+|+.+..+++.........+...+|...+++...|++++|++|+|+|+.+++||++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888887766555556667788889998899999999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChH
Q 017434 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 325 (371)
Q Consensus 246 ~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 325 (371)
.++|+++|+||||||||+|..|+++++|+++.+++.+++||+.|||||+|.|++|||+|||.+|++|||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceecccCCCc
Q 017434 326 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG 366 (371)
Q Consensus 326 gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~ 366 (371)
||+++|+.|++|++.+|++.||+|++|+.++.+.....+++
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~s~l~ 361 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEESRLK 361 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeechhhhc
Confidence 99999999999999999999999999999997665554443
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=2.2e-84 Score=630.31 Aligned_cols=366 Identities=86% Similarity=1.280 Sum_probs=333.5
Q ss_pred cCCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccc
Q 017434 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (371)
Q Consensus 6 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~ 85 (371)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||+|++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017434 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (371)
Q Consensus 86 ~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~ 165 (371)
+++||+||+++||+|.++|+++++|+++++++|||++..+++.|||||.++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHH
Q 017434 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a 245 (371)
|+|++|+||+|.+|.++...++..............+...++....++.++|++|+|+|+.|++||++|++.++++++++
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766555432211111111122233445555568889999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChH
Q 017434 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 325 (371)
Q Consensus 246 ~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 325 (371)
.++|+|+|+||||||+|+|+.++++++|+++++++.+++|||+|||||+|.|++|+|++||++|++|||++|+++..|++
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceecccCCCccccCC
Q 017434 326 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGAVARL 371 (371)
Q Consensus 326 gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~~~~~~ 371 (371)
||.++++.+++|++..|.++|+++++|+++..+....+.++-.+||
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~~~~~~~~ 367 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhccCcccCC
Confidence 9999999999999999999999999999999887665545555554
No 3
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-81 Score=611.00 Aligned_cols=356 Identities=35% Similarity=0.628 Sum_probs=322.4
Q ss_pred cCCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccc
Q 017434 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (371)
Q Consensus 6 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~ 85 (371)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017434 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (371)
Q Consensus 86 ~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~ 165 (371)
+++||+||+++||+|.++|+++++|+++++++|||++..+++.|||||+++|++.++++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccc-----------------cCCC-CC-CCcc---hhhhHhhhhcccCCCHHHHHHH
Q 017434 166 GRREADIKNRFVLPPHLTLKNYEGLY-----------------IGKM-DK-TDDS---GLASYVANQIDRSLNWKDVKWL 223 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~~~~~~~~~~~-----------------~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~~i~~i 223 (371)
|+|++|+||+|.+|.. ..+++.+.. ..+. .+ .... ....++....++.++|++|+|+
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 322211100 0000 00 0001 1122444456789999999999
Q ss_pred HhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017434 224 QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 303 (371)
Q Consensus 224 r~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~ 303 (371)
++.|++||++|++.+.++|+.+.++|+|+|+||||||++++..+++++.|.++++++.+++|||+||||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988866899999999999999999999
Q ss_pred cCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeccc
Q 017434 304 LGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 362 (371)
Q Consensus 304 lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 362 (371)
+||++|++||||+|+++..|++||.++++.|++||+..|.++|+++++||++..+...+
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~~~~ 379 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQGN 379 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998875543
No 4
>PLN02535 glycolate oxidase
Probab=100.00 E-value=3.7e-81 Score=608.48 Aligned_cols=359 Identities=64% Similarity=0.998 Sum_probs=327.4
Q ss_pred ccCCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeeccccc
Q 017434 5 SEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAF 84 (371)
Q Consensus 5 ~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~ 84 (371)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||+|+
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017434 85 QKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (371)
Q Consensus 85 ~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~ 164 (371)
++++||+||+++||+|.++|+++++|+++++++|||++..+++.|||||+++|++.++++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766889999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHH
Q 017434 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASL 244 (371)
Q Consensus 165 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~ 244 (371)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|+.|+|+|+.+++||++|++.++++++.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998883 2222111000111112233444555556888999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCCh
Q 017434 245 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324 (371)
Q Consensus 245 a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~ 324 (371)
+.++|+|+|+|+||||++++++++++..|+++++++.+++|||++|||+++.|++|+|++||++|++|||++|+++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999998866799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceecccCCCc
Q 017434 325 AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPG 366 (371)
Q Consensus 325 ~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~ 366 (371)
+|++++++.+++||+.+|.++|+.+++|+++..+....++..
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~~ 361 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERLQ 361 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhhh
Confidence 999999999999999999999999999999988876555443
No 5
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.8e-80 Score=601.06 Aligned_cols=342 Identities=44% Similarity=0.704 Sum_probs=313.3
Q ss_pred HHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccCC
Q 017434 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (371)
Q Consensus 11 ~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~ 90 (371)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|++++++||+|++||+++++||++||+|+++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017434 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 170 (371)
Q Consensus 91 ~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~ 170 (371)
+||+++||+|.++|++|++|+++++++|||++..+++.|||||++ |++.++++++||+++||++|++|||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999988778899999995 6999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccccccccccccC----------------CCC---CCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCE
Q 017434 171 DIKNRFVLPPHLTLKNYEGLYIG----------------KMD---KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 231 (371)
Q Consensus 171 d~~~~~~~p~~~~~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv 231 (371)
|+|++|.+|.++..+++.+.... ... .....+...++....++.++|+.|+|||+.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 99999998877665553221100 000 00111233344445788999999999999999999
Q ss_pred EEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 017434 232 LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 232 ~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~i 311 (371)
++|++.++++++++.++|+|+|+||||||+|++..++++++|+++++.+ ++|||+||||+++.|++|+|++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred chhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 312 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 312 Gr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
|||++|+++..|++||.++++.|++||+..|.++|+++++|+++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 6
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=5.9e-80 Score=599.98 Aligned_cols=350 Identities=37% Similarity=0.598 Sum_probs=318.5
Q ss_pred cccCCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccc
Q 017434 4 ISEITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTA 83 (371)
Q Consensus 4 ~~~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~ 83 (371)
-.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||++||++
T Consensus 10 ~~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g 89 (367)
T TIGR02708 10 YVDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVA 89 (367)
T ss_pred CcCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC
Q 017434 84 FQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT 162 (371)
Q Consensus 84 ~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~ 162 (371)
++++.||+||+++||+|.++|+++++|+++++++|||++.. +++.|||||.++|++.++++++||+++|+++|++|||+
T Consensus 90 ~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~ 169 (367)
T TIGR02708 90 AHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADA 169 (367)
T ss_pred HhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 99999999999999999999999999999999999999874 47899999999999999999999999999999999999
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHH
Q 017434 163 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDA 242 (371)
Q Consensus 163 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a 242 (371)
|+.|+|++|+|++|.+|......+ .... ....... ..+....++.++|++|+|+++.+++||++|++.++++|
T Consensus 170 p~~g~R~~d~r~~~~~p~~~~~~~-~~~~-----~~~~~~~-~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda 242 (367)
T TIGR02708 170 TVGGNREVDVRNGFVFPVGMPIVQ-EYLP-----TGAGKSM-DNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDA 242 (367)
T ss_pred CCCCcchhhhhcCCCCCCccchhh-hhcc-----cCCccch-hhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHH
Confidence 999999999999998885332111 0000 0000000 01111235778999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcC
Q 017434 243 SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD 322 (371)
Q Consensus 243 ~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~ 322 (371)
+.+.++|+|+|.||||||+|++.++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++..
T Consensus 243 ~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~ 322 (367)
T TIGR02708 243 DRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALG 322 (367)
T ss_pred HHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceec
Q 017434 323 GEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 360 (371)
Q Consensus 323 G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 360 (371)
|++||.++++.|++||+..|.++|+++++||++..+..
T Consensus 323 G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~ 360 (367)
T TIGR02708 323 GSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRH 360 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcccccc
Confidence 99999999999999999999999999999999987743
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=5.1e-79 Score=597.08 Aligned_cols=351 Identities=40% Similarity=0.651 Sum_probs=315.8
Q ss_pred CCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeeccccccc
Q 017434 7 ITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQK 86 (371)
Q Consensus 7 ~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~ 86 (371)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||++||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017434 87 MAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL 165 (371)
Q Consensus 87 ~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~ 165 (371)
++||+||+++||+|.++|+++++|+++++++|||++..+ ++.|||||.++|++.++++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 7899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCc--ccccccc-------ccccCCCCC-C----CcchhhhHhhhhcccCCCHHHHHHHHhhcCCCE
Q 017434 166 GRREADIKNRFVLPPH--LTLKNYE-------GLYIGKMDK-T----DDSGLASYVANQIDRSLNWKDVKWLQTITSLPI 231 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~--~~~~~~~-------~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv 231 (371)
|+|++|+|++| .|.. .+..++. .+....... . ...+...+.....++.++|+.|+|+++.|++||
T Consensus 178 g~Rerd~r~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGY-LPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCC-CCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 99999999998 3431 1111100 000000000 0 011222233333578899999999999999999
Q ss_pred EEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 017434 232 LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 232 ~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~i 311 (371)
++|++.+.++|+.+.++|+|+|+||||||+++|++++++++|+++++++.+++||+++|||+++.|++|+|++|||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999987689999999999999999999999999999
Q ss_pred chhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 312 GRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 312 Gr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
||||+|+++..|++||.++++.+++||+..|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988753
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.3e-78 Score=588.25 Aligned_cols=347 Identities=41% Similarity=0.700 Sum_probs=316.8
Q ss_pred cCCChHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccc
Q 017434 6 EITNVMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQ 85 (371)
Q Consensus 6 ~~~~~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~ 85 (371)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|.|+||+|+|++++||+|++||+++++||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017434 86 KMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTG-PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (371)
Q Consensus 86 ~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~ 164 (371)
++.||++|+++||+|.++|+++++|+.+++++|||.+.. +++.|||||.++|++.++++++||+++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHH
Q 017434 165 LGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASL 244 (371)
Q Consensus 165 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~ 244 (371)
.|+|++|+|++|.+|.+....+.... .. ....+... .....++.++|++++|+++.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~--~~---~~~~~~~~-~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSE--GT---GKGKGISE-IYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcc--cc---ccCcchhh-hhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 99999999999988854433221100 00 00001111 11224567899999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCCh
Q 017434 245 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGE 324 (371)
Q Consensus 245 a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~ 324 (371)
+.++|+|+|+||||||+|+|+++++++.|+++++++.+++|||++|||+++.|++|+|++||++|++|||++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999998866899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 325 AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 325 ~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
+||.++++.+++||+.+|.++|+.+++|+++..+
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999988653
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=2.3e-76 Score=577.76 Aligned_cols=343 Identities=46% Similarity=0.744 Sum_probs=305.2
Q ss_pred HHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccCChHhHHH
Q 017434 17 AKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECAT 96 (371)
Q Consensus 17 A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~ 96 (371)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhc
Q 017434 97 ARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF 176 (371)
Q Consensus 97 a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~ 176 (371)
+++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++|+++++||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCCC-------------CCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHH
Q 017434 177 VLPPHLTLKNYEGLYIGKM-------------DKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDAS 243 (371)
Q Consensus 177 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~ 243 (371)
.+|.+++.+++.+...... ..........+.....++.++|+.|+++++.|++||++|++++++|++
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9988876666532211110 011223344566656788899999999999999999999999999999
Q ss_pred HHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCC
Q 017434 244 LAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 323 (371)
Q Consensus 244 ~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G 323 (371)
++.++|+|+|.||||||||+|++++++++|+++++++++++|||+|||||+|.|++|+|++||++|++|||++|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999997789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 017434 324 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 359 (371)
Q Consensus 324 ~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 359 (371)
++||.++++.|++||+..|.++|+.+++||+++.+.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998763
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=1.5e-74 Score=561.63 Aligned_cols=339 Identities=47% Similarity=0.745 Sum_probs=309.7
Q ss_pred HHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccCC
Q 017434 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (371)
Q Consensus 11 ~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~ 90 (371)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHcCCcEEecCCCCCCHHHHhcc-CC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017434 91 EGECATARAASAAGTIMTLSSWATSSVEEVSST-GP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRR 168 (371)
Q Consensus 91 ~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~-~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r 168 (371)
++|.++|++|.++|+++++|+++++++|||.+. .| .+.|||||.++|++.++++++||+++|+++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 7899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHh
Q 017434 169 EADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQY 248 (371)
Q Consensus 169 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~ 248 (371)
++|+|++|..|.++...+.... ....+...+.....++..+|+.|+++++.+++||++|++.++++++.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988865543321100 011122233333456778999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChH
Q 017434 249 GAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 325 (371)
Q Consensus 249 Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 325 (371)
|+|+|+||||||+++|..++++.+|+++.+.+ .+++|||++|||+++.|++|+|++||++|+||||+++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999899999999998853 347999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 326 GVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 326 gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
||.++++.+++||+.+|.++|+++++||+++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999999999763
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2.3e-70 Score=527.77 Aligned_cols=324 Identities=85% Similarity=1.248 Sum_probs=293.2
Q ss_pred cceeeccccCCCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCc
Q 017434 48 RILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGI 127 (371)
Q Consensus 48 ~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~ 127 (371)
-|.|+||+|+|++++||+|++||+++++||++||+|++++.||+||+++||+|.++|+++++|++++.++|||++..+.+
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHh
Q 017434 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 128 ~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
.|||||.++|++.++++++||+++||++|++|||+|+.|+|++|+||+|.+|.+...+++..............+...++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887665555422111111111222334455
Q ss_pred hhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 208 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
....++.++|++|+|+|+.|++||++|++.+.++|+++.++|+|+|+||||||+|+|++++++++|+++++++.+++|||
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 55567889999999999999999999999999999999999999999999999999999999999999999886689999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceecccCCCcc
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHWDTPGA 367 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~~ 367 (371)
+||||+++.|++|+|++|||+|++|||++|+++..|++||.++++.+++||+..|.++|+++++|+++..+....+.++-
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988776665666
Q ss_pred ccCC
Q 017434 368 VARL 371 (371)
Q Consensus 368 ~~~~ 371 (371)
.+||
T Consensus 363 ~~~~ 366 (366)
T PLN02979 363 SARL 366 (366)
T ss_pred ccCC
Confidence 6665
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.8e-64 Score=488.65 Aligned_cols=348 Identities=41% Similarity=0.611 Sum_probs=319.2
Q ss_pred hHHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccC
Q 017434 10 VMEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH 89 (371)
Q Consensus 10 ~~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~ 89 (371)
+.|+++.|++++| +.|+|+.+|+++|.|+++|+++|++|.|+|++|++++++|++|+|||+++++||++|||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 3689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchh
Q 017434 90 PEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRRE 169 (371)
Q Consensus 90 ~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~ 169 (371)
+++|...+++|..+|.++++++++++++|++.+..+ ||+|...|++...++++++.++|++++++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999886654 9999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccccccccCCCCCCCcc----hhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHH
Q 017434 170 ADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDS----GLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLA 245 (371)
Q Consensus 170 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a 245 (371)
+|.++++..|......|+.+............ ...++.....+|.++|+++.++++.|..|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 99999998887666665543221111111111 23455556678889999999999999999999999999999999
Q ss_pred HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChH
Q 017434 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEA 325 (371)
Q Consensus 246 ~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~ 325 (371)
.+.|+++|.+|||||+|+|++++++++|++++++++++++|++|||||+|.|++|||++||++|++|||++|+++..|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceeccc
Q 017434 326 GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 362 (371)
Q Consensus 326 gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 362 (371)
||.++++.+++||+..|.++|+++++||++..++...
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeecc
Confidence 9999999999999999999999999999999887543
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=8.4e-59 Score=446.43 Aligned_cols=299 Identities=57% Similarity=0.914 Sum_probs=283.6
Q ss_pred HHHHHHHHhhCCcchhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccCC
Q 017434 11 MEYEALAKEKLPKMVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHP 90 (371)
Q Consensus 11 ~d~~~~A~~~l~~~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~ 90 (371)
.||+..|+++||+..|+|+.+|++++.|+++|+.+|++|+|+||+|++++++||+|+|||++++.||++|||++.++.|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017434 91 EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREA 170 (371)
Q Consensus 91 ~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~ 170 (371)
+++..++++|+++|+++++|++++.+.+++.+..++|.|+|||...|++.+.++++++++.|+++|++|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988999999877778999999997799999999999999999999999999864211
Q ss_pred HhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCC
Q 017434 171 DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGA 250 (371)
Q Consensus 171 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Ga 250 (371)
+.|+.++++++.+++||++|++.++++++.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 367889999999999999999999999999999999
Q ss_pred CEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHH
Q 017434 251 AGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKV 330 (371)
Q Consensus 251 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~ 330 (371)
|+|+++||||++.++++++++.++++++.+++++|||++|||+++.|++|+|++|||+|++||||++++...|++++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999998855799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 331 LQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 331 l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
++.+++||+.+|.++|+++++|+++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999974
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=6.2e-38 Score=304.58 Aligned_cols=270 Identities=27% Similarity=0.345 Sum_probs=215.6
Q ss_pred HhHhccccceeeccccC--CCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCC---
Q 017434 41 ENRNAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS--- 115 (371)
Q Consensus 41 ~n~~~~~~~~l~pr~l~--~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~--- 115 (371)
.+...||+|+|+|+.|+ +++++||+|+|+|++++.||++|||+|++....+.+..++++|+++|+++++++.+..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35668999999999998 8999999999999999999999999876533333467999999999999999987421
Q ss_pred -----CHHHHhccCC-CceEEEEeecC----ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017434 116 -----SVEEVSSTGP-GIRFFQLYVTK----HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185 (371)
Q Consensus 116 -----~~eei~~~~~-~~~~~QLy~~~----d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 185 (371)
+++.+.+..+ .|++.++..+. +.+... +.++..+++++.++++++.. ...|
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~---~~i~~~~adalel~l~~~q~----------~~~~------ 157 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEAR---RAVEMIEADALAIHLNPLQE----------AVQP------ 157 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHH---HHHHhcCCCcEEEeCcchHh----------hcCC------
Confidence 2233444555 66666665543 444433 34445678999998865321 0001
Q ss_pred cccccccCCCCCCCcchhhhHhhhhcccCC--CHHHHHHHHhhcCCCEEEEEc---cCHHHHHHHHHhCCCEEEEeCCCC
Q 017434 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSL--NWKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGA 260 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ir~~~~~pv~vK~v---~~~e~a~~a~~~Gad~I~vs~~gg 260 (371)
..+.++ ..+.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+++||
T Consensus 158 ------------------------~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 158 ------------------------EGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred ------------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 012222 236799999999999999997 789999999999999999999988
Q ss_pred cC--------------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 261 RQ--------------------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 261 ~~--------------------~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
+. .+++.++...|.++++.+. ++|||++|||+++.|+.|+|++|||+|++|||+++++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 41 1336677788988888764 79999999999999999999999999999999999876
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 321 VDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 321 ~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
. |.+++.++++.+.+||+.+|.++|++|++|+++
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999974
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=7.4e-38 Score=306.54 Aligned_cols=279 Identities=24% Similarity=0.340 Sum_probs=224.7
Q ss_pred HhccccceeeccccC--CCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCC--C---
Q 017434 43 RNAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT--S--- 115 (371)
Q Consensus 43 ~~~~~~~~l~pr~l~--~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~--~--- 115 (371)
...||+|+|+|+.|. +.+++||+|+|+|++++.||+++||++++....+.+..++++|+++|+++++++++. .
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 357999999999998 888999999999999999999999998753333456799999999999999998752 1
Q ss_pred ---CHHHHhccCC-CceEEEEeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017434 116 ---SVEEVSSTGP-GIRFFQLYVTKHRNV-DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 190 (371)
Q Consensus 116 ---~~eei~~~~~-~~~~~QLy~~~d~~~-~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 190 (371)
+++.+++..| .|++.+|..+..... .++..+.++..+++++.++++++.. ...|
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe----------~~~p----------- 165 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE----------LVQP----------- 165 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh----------hcCC-----------
Confidence 2223444554 677777766444222 2334445556788999998865321 0001
Q ss_pred ccCCCCCCCcchhhhHhhhhcccCC--CHHHHHHHHhhcCCCEEEEEc---cCHHHHHHHHHhCCCEEEEeCCCCc----
Q 017434 191 YIGKMDKTDDSGLASYVANQIDRSL--NWKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGAR---- 261 (371)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ir~~~~~pv~vK~v---~~~e~a~~a~~~Gad~I~vs~~gg~---- 261 (371)
..+.++ ..+.++++++.+++||++|++ .+.++++.+.++|+|+|+|+++||+
T Consensus 166 -------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 166 -------------------EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred -------------------CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 112222 237799999999999999998 7899999999999999999999873
Q ss_pred -----C---------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHH
Q 017434 262 -----Q---------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 327 (371)
Q Consensus 262 -----~---------~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv 327 (371)
. .+++.++...|.++++.+ .++|||++|||+++.|+.|+|++|||+|++||++++++...|.+++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 1 245778889999998874 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhcccceeccc
Q 017434 328 RKVLQMLRDEFELTMALSGCRSLKEITRNHIVTHW 362 (371)
Q Consensus 328 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 362 (371)
.++++.+.+||+.+|..+|+++++||++..+....
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999998876544
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=2.2e-36 Score=294.60 Aligned_cols=276 Identities=25% Similarity=0.348 Sum_probs=214.8
Q ss_pred hccccceeeccccC--CCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCC------
Q 017434 44 NAFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS------ 115 (371)
Q Consensus 44 ~~~~~~~l~pr~l~--~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~------ 115 (371)
..|++|+|+|..|+ +++++||||+|+|++++.||+++||+|++......+..++++|+++|+++++++.+..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 35999999999996 6889999999999999999999999876522223356999999999999999887521
Q ss_pred --CHHHHhccCC-CceEEEEeecCChH-HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccc
Q 017434 116 --SVEEVSSTGP-GIRFFQLYVTKHRN-VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY 191 (371)
Q Consensus 116 --~~eei~~~~~-~~~~~QLy~~~d~~-~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 191 (371)
+...+++..+ .|++.+|......+ ...+..+.++..+++++.++++++.. ...|
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~----------~~~p------------ 158 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE----------LVQP------------ 158 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc----------ccCC------------
Confidence 1123344334 56666664422211 13334445555678899888865421 0001
Q ss_pred cCCCCCCCcchhhhHhhhhcccCC--CHHHHHHHHhhcCCCEEEEEc---cCHHHHHHHHHhCCCEEEEeCCCCcC----
Q 017434 192 IGKMDKTDDSGLASYVANQIDRSL--NWKDVKWLQTITSLPILVKGV---LTAEDASLAIQYGAAGIIVSNHGARQ---- 262 (371)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ir~~~~~pv~vK~v---~~~e~a~~a~~~Gad~I~vs~~gg~~---- 262 (371)
..+.+| ..+.++++++.+++||++|.+ .+.++++.+.++|+|+|+|+++||+.
T Consensus 159 ------------------~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 159 ------------------EGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred ------------------CCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 122223 237799999999999999987 78899999999999999999988753
Q ss_pred --------------CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHH
Q 017434 263 --------------LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVR 328 (371)
Q Consensus 263 --------------~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~ 328 (371)
.+++.++.+.+.++++ +..++|||++|||+++.|+.|+|++|||+|++||+++..+...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2345667778888876 2237999999999999999999999999999999999987768999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCHhhhcccceec
Q 017434 329 KVLQMLRDEFELTMALSGCRSLKEITRNHIVT 360 (371)
Q Consensus 329 ~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 360 (371)
++++.+.+||+.+|.++|+++++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887654
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.97 E-value=1e-28 Score=236.69 Aligned_cols=256 Identities=19% Similarity=0.220 Sum_probs=194.3
Q ss_pred ccccceeeccccC--CCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh-
Q 017434 45 AFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS- 121 (371)
Q Consensus 45 ~~~~~~l~pr~l~--~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~- 121 (371)
.||++.|+|+.++ +++++|++|+|+|++++.||++++|. ...|..||++|+++|...++..+ ++|+..
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 6999999999886 56799999999999999999999994 25688999999999999888653 455432
Q ss_pred ---ccCCCceEEEEeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCC
Q 017434 122 ---STGPGIRFFQLYVTKHRNVDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (371)
Q Consensus 122 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG--~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 196 (371)
+..+....+.+-.....+.. +.+....++| .+.+++ |+..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 22222223444444444443 3344445566 466654 3211
Q ss_pred CCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCC--------CCcc
Q 017434 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQL--------DYVP 267 (371)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~--------~~~~ 267 (371)
++....++.++++|+.++.|+++|+ +.+.++|+.+.++|+|+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1222356889999999998866666 8999999999999999999998877631 2223
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc------
Q 017434 268 ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------ 321 (371)
Q Consensus 268 ~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------ 321 (371)
+.+.++.++++++ ++|||+||||+++.|++|+|++|||+||+||+|- +++..
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 4677899999887 7999999999999999999999999999999872 22210
Q ss_pred ----CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceec
Q 017434 322 ----DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 360 (371)
Q Consensus 322 ----~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 360 (371)
+|. ..+.+++..|...|+..|.++|+++++||++..+..
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 010 138899999999999999999999999999876654
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.96 E-value=3.9e-28 Score=233.72 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=195.9
Q ss_pred ccccceeeccccC--CCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh-
Q 017434 45 AFSRILFRPRILR--DVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS- 121 (371)
Q Consensus 45 ~~~~~~l~pr~l~--~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~- 121 (371)
.||++.|+|..|+ +++++|++|+|+|++++.||++++|. ...|..||++|+++|...++.-+ .+|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k~---~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHRF---DPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 5999999999886 56799999999999999999999994 25688999999999998888542 455533
Q ss_pred ---ccCCCceEEEEeecCChHHHHHHHHHHHHcCC--cEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCC
Q 017434 122 ---STGPGIRFFQLYVTKHRNVDAQLVKRAERAGF--KAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMD 196 (371)
Q Consensus 122 ---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~--~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 196 (371)
+..+...+..+-...+.+.. +.++...++|+ ++|.| |+..
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~i--D~a~-------------------------------- 121 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITI--DIAH-------------------------------- 121 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEE--ECCC--------------------------------
Confidence 22333335555554444444 34444555654 88776 4321
Q ss_pred CCCcchhhhHhhhhcccCCCHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCC------CCccc-
Q 017434 197 KTDDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL------DYVPA- 268 (371)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~------~~~~~- 268 (371)
++.....+.|+++|+.++ .||++|.+.+.++++.+.++|+|+|.+++++|++. ..+.+
T Consensus 122 --------------gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 122 --------------GHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred --------------CchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 011123567999999995 88888889999999999999999999999999652 12345
Q ss_pred -hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhh---c---
Q 017434 269 -TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLA---V--- 321 (371)
Q Consensus 269 -~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~---~--- 321 (371)
.+..+.++++.+ ++|||++|||+++.|+.|+|++|||+||+|++|. +++. .
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 455688888876 7999999999999999999999999999999987 1110 0
Q ss_pred ----CChH-------HHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceec
Q 017434 322 ----DGEA-------GVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 360 (371)
Q Consensus 322 ----~G~~-------gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 360 (371)
+|.+ .+.+++..+..+|+..|.++|++++.||++..+..
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 48889999999999999999999999999865543
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.96 E-value=9.2e-28 Score=228.41 Aligned_cols=256 Identities=22% Similarity=0.260 Sum_probs=194.3
Q ss_pred hccccceeeccc--cCCCCCCccceeecCc-----ccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCC
Q 017434 44 NAFSRILFRPRI--LRDVSKIDMTTTVLGF-----NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS 116 (371)
Q Consensus 44 ~~~~~~~l~pr~--l~~~~~~d~s~~i~G~-----~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~ 116 (371)
..|+++.|+|+. +.+.+++|++++|..+ .+..||+-|.|-.. +|..+|.+.+++|...++.- ..+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iHk--~~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIHK--HYS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEee--CCC
Confidence 379999999973 5677899999999744 68899999999654 37899999999999999954 455
Q ss_pred HHHHhc----cCCCc-eEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017434 117 VEEVSS----TGPGI-RFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG 189 (371)
Q Consensus 117 ~eei~~----~~~~~-~~~QLy~~~d~~~~~~~~~~a~~a--G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 189 (371)
+|+..+ ..+.. ...-+-... .+...+.++...++ +.+.|+| |+..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~-~~~d~er~~~L~~a~~~~d~ivi--D~Ah------------------------- 131 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGS-SDNDLEKMTSILEAVPQLKFICL--DVAN------------------------- 131 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEecc-CHHHHHHHHHHHhcCCCCCEEEE--ECCC-------------------------
Confidence 665332 12111 111112222 22233455555555 4787766 3321
Q ss_pred cccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEe-----CCCCcCC
Q 017434 190 LYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS-----NHGARQL 263 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs-----~~gg~~~ 263 (371)
++.....+.|+|+|+.|+.+.++|+ +.++|+++.++++|||+|.|+ +|++++.
T Consensus 132 ---------------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 132 ---------------------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred ---------------------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCcee
Confidence 1222356889999999987888888 999999999999999999998 7888888
Q ss_pred CCcc-chHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc
Q 017434 264 DYVP-ATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV 321 (371)
Q Consensus 264 ~~~~-~~~~~l~~i~~~~~~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~ 321 (371)
++.+ |++++++++++++++ ++|||+||||+++.|++|||++|||+||+|+.+. +|++.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS 270 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccch
Confidence 8755 899999999999876 7999999999999999999999999999998652 12211
Q ss_pred -----------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 322 -----------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 322 -----------------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|. ..+.+++..|...|+..|.++|..+++||++.
T Consensus 271 ~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 13888999999999999999999999999654
No 20
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.94 E-value=2.7e-25 Score=218.14 Aligned_cols=288 Identities=22% Similarity=0.284 Sum_probs=190.1
Q ss_pred ccccceeeccc-cCCCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCC----CCCCHHH
Q 017434 45 AFSRILFRPRI-LRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW----ATSSVEE 119 (371)
Q Consensus 45 ~~~~~~l~pr~-l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~----~~~~~ee 119 (371)
.||++.|+|+. -.+.+++|+++.+.+..+..||+++||.+.+ +..++.+.+++|...++... ...+.++
T Consensus 17 ~fddV~lvp~~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~e~ 90 (368)
T PRK08649 17 GLDEIAIVPSRRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDPEP 90 (368)
T ss_pred CcceEEEeCCCCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCHHH
Confidence 69999999982 2356889999999999999999999998765 67999999999997777621 1233444
Q ss_pred Hhc----cCC---CceEEEEe-ecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCcccccccccc
Q 017434 120 VSS----TGP---GIRFFQLY-VTKHRNVDAQLVKRAERAGFKAIALTVDT-PRLGRREADIKNRFVLPPHLTLKNYEGL 190 (371)
Q Consensus 120 i~~----~~~---~~~~~QLy-~~~d~~~~~~~~~~a~~aG~~al~vtvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 190 (371)
+.. ..+ ....-++| .+.+++.+.++++.+++++ +.+++.. |. ...++-.... -.++..-. +
T Consensus 91 l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~---V~v~vr~~~~---~~~e~a~~l~-eaGvd~I~---v 160 (368)
T PRK08649 91 ILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAG---VIVAVSLSPQ---RAQELAPTVV-EAGVDLFV---I 160 (368)
T ss_pred HHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCe---EEEEEecCCc---CHHHHHHHHH-HCCCCEEE---E
Confidence 322 111 00001111 1456777777777777764 2222211 10 0001000000 00000000 0
Q ss_pred ccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc------CCC
Q 017434 191 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLD 264 (371)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~------~~~ 264 (371)
+.. + ..+.+. ...-.|+.+.++++..++||+++.+.+.++++.++++|||+|.++.++|+ ...
T Consensus 161 hgr----t---~~~~h~----~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g 229 (368)
T PRK08649 161 QGT----V---VSAEHV----SKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLG 229 (368)
T ss_pred ecc----c---hhhhcc----CCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCC
Confidence 000 0 000111 11125777777777789999998899999999999999999999754442 123
Q ss_pred CccchHHHHHHHHHHhc--------CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcC--------------
Q 017434 265 YVPATVMALEEVVQAAK--------GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-------------- 322 (371)
Q Consensus 265 ~~~~~~~~l~~i~~~~~--------~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~-------------- 322 (371)
.+.|.+.++.+++++.+ .++|||++|||+++.|+.|+|++|||+||+|++|.....+.
T Consensus 230 ~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~ 309 (368)
T PRK08649 230 IGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPS 309 (368)
T ss_pred CCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCc
Confidence 36778888888875431 15999999999999999999999999999999886432211
Q ss_pred ---Ch-------HHHHHHHH----------HHHHHHHHHHHHhCCCCHhhhccccee
Q 017434 323 ---GE-------AGVRKVLQ----------MLRDEFELTMALSGCRSLKEITRNHIV 359 (371)
Q Consensus 323 ---G~-------~gv~~~l~----------~l~~el~~~m~~~G~~~l~~l~~~~l~ 359 (371)
|. ..+++++. .|...|++.|.++|+.+++||++..+.
T Consensus 310 ~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~ 366 (368)
T PRK08649 310 LPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVV 366 (368)
T ss_pred CCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeE
Confidence 11 13778877 999999999999999999999987664
No 21
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.94 E-value=8.6e-26 Score=221.05 Aligned_cols=291 Identities=21% Similarity=0.268 Sum_probs=189.4
Q ss_pred Hhccccceeecc-ccCCCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCC----CCCCH
Q 017434 43 RNAFSRILFRPR-ILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSW----ATSSV 117 (371)
Q Consensus 43 ~~~~~~~~l~pr-~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~----~~~~~ 117 (371)
...||+|.|+|. ..++.+++||++++.+.++..||++|||++.+ +.+++.+++++|.+.+++.. .....
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~ 85 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDP 85 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCH
Confidence 348999999995 67899999999999999999999999999876 77999999999997666531 11222
Q ss_pred HHH----hccCCC-------ceEEEEee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017434 118 EEV----SSTGPG-------IRFFQLYV-TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185 (371)
Q Consensus 118 eei----~~~~~~-------~~~~QLy~-~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 185 (371)
+.+ ....+. ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++-.... ..+..
T Consensus 86 ~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l~-eAGad-- 157 (369)
T TIGR01304 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIVV-KAGAD-- 157 (369)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHHH-HCCCC--
Confidence 211 110000 00011111 24556666666666665521 112221 10 0111100000 00000
Q ss_pred cccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC---
Q 017434 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--- 262 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~--- 262 (371)
.+. +. ... -.+++.. ..-.|..+.++++..++||+++++.+.++++.++++|||+|.++.+|+..
T Consensus 158 ---~I~---ih-grt-~~q~~~s----g~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~ 225 (369)
T TIGR01304 158 ---LLV---IQ-GTL-VSAEHVS----TSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL 225 (369)
T ss_pred ---EEE---Ee-ccc-hhhhccC----CCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc
Confidence 000 00 000 0011111 12257888888888999999988999999999999999999965554432
Q ss_pred -CCCccchHHHHHHHHHHhc-------C-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCC----------
Q 017434 263 -LDYVPATVMALEEVVQAAK-------G-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG---------- 323 (371)
Q Consensus 263 -~~~~~~~~~~l~~i~~~~~-------~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G---------- 323 (371)
+..+.+..+.+.++..+.+ + .+|||++|||+++.|+.|+|++|||+||+|++|+....+.|
T Consensus 226 ~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 226 VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 2235677778887765432 1 49999999999999999999999999999999976433211
Q ss_pred -------------hHH----HHHHH----------HHHHHHHHHHHHHhCCCCHhhhccccee
Q 017434 324 -------------EAG----VRKVL----------QMLRDEFELTMALSGCRSLKEITRNHIV 359 (371)
Q Consensus 324 -------------~~g----v~~~l----------~~l~~el~~~m~~~G~~~l~~l~~~~l~ 359 (371)
..| ++++| .+|...|++.|..+|+.+++|+++..+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 306 HPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 56665 5788999999999999999999987653
No 22
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.94 E-value=2.3e-24 Score=214.33 Aligned_cols=274 Identities=24% Similarity=0.224 Sum_probs=186.1
Q ss_pred CccceeecC-----cccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecC
Q 017434 62 IDMTTTVLG-----FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTK 136 (371)
Q Consensus 62 ~d~s~~i~G-----~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~ 136 (371)
++.++.+++ ..+..||+++||+++.+ ..+...+++.+++++|....+++.. .+.+++.... ....|+- ..
T Consensus 60 ~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Gegg-~~~~~~~~~~--~~i~q~~-~~ 134 (392)
T cd02808 60 VDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEGG-ELPEEREGGG--DIIKQVA-SG 134 (392)
T ss_pred cccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCCC-CCHHHHhhhh--heEEEec-CC
Confidence 344565554 34578999999997764 4445679999999999998888643 5566654322 2344541 11
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRL-GRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~-g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
........++. +++|.+-+.--.. | .+-.+|. |++..-.... ......+.+++..+++
T Consensus 135 ~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~eiA~~r--------~~~~g~~~isp~~~~~ 194 (392)
T cd02808 135 RFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEEIAKIR--------GIPPGVDLISPPPHHD 194 (392)
T ss_pred CCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHHHHHHh--------CCCCCccccCCCCCCC
Confidence 11222222221 4556555431110 0 0001121 1111000000 0001122333334444
Q ss_pred CC-----HHHHHHHHhhcC-CCEEEEEcc--CHHHHHHHHHhC-CCEEEEeCCCCcC--------CCCccchHHHHHHHH
Q 017434 215 LN-----WKDVKWLQTITS-LPILVKGVL--TAEDASLAIQYG-AAGIIVSNHGARQ--------LDYVPATVMALEEVV 277 (371)
Q Consensus 215 ~~-----~~~i~~ir~~~~-~pv~vK~v~--~~e~a~~a~~~G-ad~I~vs~~gg~~--------~~~~~~~~~~l~~i~ 277 (371)
+. .+.|+++|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++|.+ .+++.|+...|.++.
T Consensus 195 ~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~ 274 (392)
T cd02808 195 IYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAH 274 (392)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHH
Confidence 43 567999999998 999999986 467776666666 9999999996543 356788999999998
Q ss_pred HHhc-----CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcC-----------------------------C
Q 017434 278 QAAK-----GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------G 323 (371)
Q Consensus 278 ~~~~-----~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G 323 (371)
+.+. .++|||++|||+++.|++|++++|||+|.+||++++++.|. |
T Consensus 275 ~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~ 354 (392)
T cd02808 275 QALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGK 354 (392)
T ss_pred HHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchH
Confidence 7762 36999999999999999999999999999999999987654 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccceec
Q 017434 324 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIVT 360 (371)
Q Consensus 324 ~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 360 (371)
.++|.++++.+.+||+.+|..+|+.++++++++++..
T Consensus 355 ~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~~ 391 (392)
T cd02808 355 AERVANYLKSLAEELRELAAALGKRSLELLGRSDLLA 391 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhhc
Confidence 7899999999999999999999999999999987653
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.93 E-value=1.3e-24 Score=211.12 Aligned_cols=256 Identities=25% Similarity=0.328 Sum_probs=192.2
Q ss_pred ccccceeeccc-cCCCCCCccceeecC-cccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhc
Q 017434 45 AFSRILFRPRI-LRDVSKIDMTTTVLG-FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (371)
Q Consensus 45 ~~~~~~l~pr~-l~~~~~~d~s~~i~G-~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~ 122 (371)
.||++.|+|.. -.+.+++|++|+|.+ ..++.||+.|||.+.+ +..++.+.+++|...++.. ..+.+++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 69999999975 356889999999988 8899999999998765 6689999999998777753 234454432
Q ss_pred c---CCCce-EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCC
Q 017434 123 T---GPGIR-FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKT 198 (371)
Q Consensus 123 ~---~~~~~-~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (371)
. ...++ ..+.. +.+ +...+.++.+.++|++.|+++.-.
T Consensus 75 ~i~~vk~~l~v~~~~-~~~-~~~~~~~~~l~eagv~~I~vd~~~------------------------------------ 116 (325)
T cd00381 75 EVRKVKGRLLVGAAV-GTR-EDDKERAEALVEAGVDVIVIDSAH------------------------------------ 116 (325)
T ss_pred HHHHhccCceEEEec-CCC-hhHHHHHHHHHhcCCCEEEEECCC------------------------------------
Confidence 1 12222 22332 223 233456667777899988875410
Q ss_pred CcchhhhHhhhhcccCCCHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc------CCCCccchHH
Q 017434 199 DDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVM 271 (371)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~------~~~~~~~~~~ 271 (371)
.++....+.++++++..+ +||++..+.+.++|+.+.++|+|+|+++..+|. ....+.+++.
T Consensus 117 ------------G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~ 184 (325)
T cd00381 117 ------------GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQAT 184 (325)
T ss_pred ------------CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHH
Confidence 011123567899998874 888888889999999999999999999543221 2345778899
Q ss_pred HHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhc-----------------------------
Q 017434 272 ALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV----------------------------- 321 (371)
Q Consensus 272 ~l~~i~~~~~~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~----------------------------- 321 (371)
.+.++.+.+.. ++|||++|||+++.|+.|++++||++||+||.|.-...+
T Consensus 185 ~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~ 264 (325)
T cd00381 185 AVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGG 264 (325)
T ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcc
Confidence 99999887643 699999999999999999999999999999988532111
Q ss_pred -------------CC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 322 -------------DG-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 322 -------------~G-------~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
+| ...+.+++..+...|+..|.++|+.+|+||++...
T Consensus 265 ~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~ 321 (325)
T cd00381 265 DRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKAR 321 (325)
T ss_pred ccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCe
Confidence 01 11388899999999999999999999999997643
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.93 E-value=3e-24 Score=207.92 Aligned_cols=256 Identities=24% Similarity=0.327 Sum_probs=182.0
Q ss_pred ccccceeeccc---cCCCCCCccceee-cCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHH
Q 017434 45 AFSRILFRPRI---LRDVSKIDMTTTV-LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV 120 (371)
Q Consensus 45 ~~~~~~l~pr~---l~~~~~~d~s~~i-~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei 120 (371)
.||++.|+|.. +++..++|+++.+ .+.+++.||+-|||...+ |..+|.+.++.|...++.- +.++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 69999999975 4566677777666 688999999999996554 7799999999999989854 3555432
Q ss_pred -------hccC-------CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017434 121 -------SSTG-------PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 186 (371)
Q Consensus 121 -------~~~~-------~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 186 (371)
++.. .....+=.......+. .+.++...++|++.|+|.+ +. +
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~-~er~~~L~~agvD~ivID~--a~----------g----------- 131 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDD-FERAEALVEAGVDVIVIDS--AH----------G----------- 131 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCH-HHHHHHHHHTT-SEEEEE---SS----------T-----------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCHHH-HHHHHHHHHcCCCEEEccc--cC----------c-----------
Confidence 2211 1222222222222222 3455556668999998743 21 0
Q ss_pred ccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC---
Q 017434 187 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--- 262 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~--- 262 (371)
+.....+.++++|+.++ +||++..+.|.+-++.++++|||+|.|.-.+|..
T Consensus 132 -------------------------~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 132 -------------------------HSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp -------------------------TSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred -------------------------cHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 11123467899999995 9999999999999999999999999998665541
Q ss_pred ---CCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hh
Q 017434 263 ---LDYVPATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FS 318 (371)
Q Consensus 263 ---~~~~~~~~~~l~~i~~~~~~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~ 318 (371)
.-.|.|++.++.+++++..+ .+|||+||||+++.|+.|||++|||+||+|+.|- ++
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 23477899999999988753 7999999999999999999999999999999772 22
Q ss_pred hhc------------------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 017434 319 LAV------------------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 357 (371)
Q Consensus 319 ~~~------------------------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 357 (371)
++. +|. -.+.+++..|...|+..|.++|..+|.||++..
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 221 111 138899999999999999999999999999874
No 25
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.92 E-value=1.4e-23 Score=199.80 Aligned_cols=256 Identities=20% Similarity=0.208 Sum_probs=188.6
Q ss_pred hccccceeeccc--cCCCCCCccceeec-----CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCC
Q 017434 44 NAFSRILFRPRI--LRDVSKIDMTTTVL-----GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS 116 (371)
Q Consensus 44 ~~~~~~~l~pr~--l~~~~~~d~s~~i~-----G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~ 116 (371)
..|+++.|+|+. +.+.+++|++.+|. ...+..||+-|+|-.. +|..+|.+.+++|...++.- ..+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iHk--~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVHK--HYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEec--CCC
Confidence 479999999974 45668899988774 3446799999999654 37899999999999999954 456
Q ss_pred HHHHhc----cCCCc-eEEEEeecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017434 117 VEEVSS----TGPGI-RFFQLYVTKHRNVDAQLVKRAER--AGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEG 189 (371)
Q Consensus 117 ~eei~~----~~~~~-~~~QLy~~~d~~~~~~~~~~a~~--aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 189 (371)
+|+..+ ..+.. ..+-+-....++.. +.++...+ +|++.|+|.+ ..
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d~-er~~~L~~~~~g~D~iviD~--Ah------------------------- 132 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDADF-EKTKQILALSPALNFICIDV--AN------------------------- 132 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEEC--CC-------------------------
Confidence 765432 21110 11111222333333 34444444 5888887643 11
Q ss_pred cccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----C--
Q 017434 190 LYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----Q-- 262 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~-- 262 (371)
++.....+.|+++|+.+ +.+|+...+.|+|.++.++++|||+|.|.-..|. +
T Consensus 133 ---------------------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 133 ---------------------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ---------------------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 11223567899999998 6899999999999999999999999999765553 1
Q ss_pred CCCccchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc
Q 017434 263 LDYVPATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV 321 (371)
Q Consensus 263 ~~~~~~~~~~l~~i~~~~~~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~ 321 (371)
.-.|.|.+.++.+++++.+. .+|||+||||++..|+.|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 23467899999999887643 6899999999999999999999999999999772 22221
Q ss_pred -----------------CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 322 -----------------DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 322 -----------------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|. -.+.+++..|...|+..|.++|..++.||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 010 12889999999999999999999999999643
No 26
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.92 E-value=3.6e-23 Score=199.28 Aligned_cols=238 Identities=20% Similarity=0.263 Sum_probs=174.3
Q ss_pred cceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecC---------------------C------CCCC
Q 017434 64 MTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS---------------------W------ATSS 116 (371)
Q Consensus 64 ~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~---------------------~------~~~~ 116 (371)
++|+|+|.++++||++||..... +....+.+.+.|..++++. + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999942211 2234444555688877651 1 1112
Q ss_pred HHH----Hhc---cCCCceEEEEeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017434 117 VEE----VSS---TGPGIRFFQLYVTKHRNVDAQLVKRAERAG--FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 187 (371)
Q Consensus 117 ~ee----i~~---~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG--~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 187 (371)
.+. +.+ ..+.|..+||+. .+.+.+.+.++.+++++ ++++.+|+.||... +.+
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~--------~~g---------- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK--------GGG---------- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCC--------CCc----------
Confidence 222 221 122478999985 67888888999998764 89999999999741 000
Q ss_pred cccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH----HHHHHHHHhCCCEEEEeCC-CCcC
Q 017434 188 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNH-GARQ 262 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~----e~a~~a~~~Gad~I~vs~~-gg~~ 262 (371)
..+. .++.+..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0011 24556789999999999999999997554 3477889999999999874 1211
Q ss_pred C---------------CCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCC
Q 017434 263 L---------------DYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 323 (371)
Q Consensus 263 ~---------------~~~~~----~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G 323 (371)
. ..+++ .++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 0 01222 246777787776 699999999999999999999999999999999863 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 324 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 324 ~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
.++..++++|+.+|+..|+++++|+++.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4788999999999999999999999864
No 27
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.91 E-value=4.3e-23 Score=200.29 Aligned_cols=251 Identities=17% Similarity=0.160 Sum_probs=188.6
Q ss_pred eecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCC-HH---H----Hhcc--CCCceEEEEeecC
Q 017434 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSS-VE---E----VSST--GPGIRFFQLYVTK 136 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~-~e---e----i~~~--~~~~~~~QLy~~~ 136 (371)
++.+..+..|+++|||++.+ |.++++.|+++|..+++++|-+.. +. + .... .+.+..+||+. .
T Consensus 2 ~i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g-~ 74 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAG-S 74 (321)
T ss_pred ccCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeC-C
Confidence 35567788999999999886 889999999999999888874432 10 1 1111 12567899985 7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
|++.+.+.++.+++.|++.|++|++||.. ++... +.+..+. .+|++.
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~----------------g~Gs~ll--~~p~~~ 121 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAK---------------KVNRK----------------LAGSALL--QYPDLV 121 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCC----------------CcccHHh--cCHHHH
Confidence 88988889998888999999999999973 11100 1122223 467778
Q ss_pred HHHHHHHHhhcCCCEEEEEcc--------CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 217 WKDVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~--------~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
.+.++.+++.+++||.+|... ..+.++.+.++|+|.|++++....+...+++.++.+.++++.+ ++|||+
T Consensus 122 ~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~ 199 (321)
T PRK10415 122 KSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIA 199 (321)
T ss_pred HHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEE
Confidence 889999999999999999852 1244678899999999996543334556778899999999987 799999
Q ss_pred ecCCCCHHHHHHHHH-cCCCEEEEchhH-----HHhhhc----CC----hHHHHHHHHHHHHHHHHHHHHhCCC-CHhhh
Q 017434 289 DGGVRRGTDVFKALA-LGASGVFVGRPV-----PFSLAV----DG----EAGVRKVLQMLRDEFELTMALSGCR-SLKEI 353 (371)
Q Consensus 289 ~GGI~~~~dv~kal~-lGAd~V~iGr~~-----l~~~~~----~G----~~gv~~~l~~l~~el~~~m~~~G~~-~l~~l 353 (371)
+|||++++|+.+++. .|||+||+||++ ++.... .| +....+.++.+.++++.....+|.. .+.++
T Consensus 200 nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (321)
T PRK10415 200 NGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIA 279 (321)
T ss_pred eCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHH
Confidence 999999999999998 699999999954 443211 12 2345677888889998888888753 56777
Q ss_pred ccccee
Q 017434 354 TRNHIV 359 (371)
Q Consensus 354 ~~~~l~ 359 (371)
|++..+
T Consensus 280 rk~~~~ 285 (321)
T PRK10415 280 RKHVSW 285 (321)
T ss_pred HHHHHH
Confidence 777544
No 28
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=1.2e-22 Score=200.23 Aligned_cols=255 Identities=20% Similarity=0.251 Sum_probs=183.0
Q ss_pred hccccceeecccc-CCCCCCccceeec-CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh
Q 017434 44 NAFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (371)
Q Consensus 44 ~~~~~~~l~pr~l-~~~~~~d~s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~ 121 (371)
..||++.|+|..- ...+++|++|++. ...+..||+.|||.+.+ +..+|.+.+++|...+++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4799999999743 4567899998884 56678999999997654 5689999999999988863 45566543
Q ss_pred ccC------C--CceE------------------E------------------------EEee----cCChHHHHHHHHH
Q 017434 122 STG------P--GIRF------------------F------------------------QLYV----TKHRNVDAQLVKR 147 (371)
Q Consensus 122 ~~~------~--~~~~------------------~------------------------QLy~----~~d~~~~~~~~~~ 147 (371)
+.. . .+.. + ||+. ...+ ...+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~-~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDI-DTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCH-HHHHHHHH
Confidence 211 0 0000 0 0100 1111 13344445
Q ss_pred HHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhc
Q 017434 148 AERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT 227 (371)
Q Consensus 148 a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~ 227 (371)
+.++|++.|+| |+.. +++....+.++++|+.+
T Consensus 161 lv~aGvDvI~i--D~a~----------------------------------------------g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVI--DSAH----------------------------------------------GHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEE--ECCC----------------------------------------------CCChhHHHHHHHHHhhC
Confidence 55566665554 2210 12223457799999998
Q ss_pred -CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCC-----cCCC-CccchHHHHHHHHHHhc-CCCcEEEecCCCCHHHHH
Q 017434 228 -SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGA-----RQLD-YVPATVMALEEVVQAAK-GRVPVFLDGGVRRGTDVF 299 (371)
Q Consensus 228 -~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~i~via~GGI~~~~dv~ 299 (371)
+++++++.+.|.++++.+.++|+|+|.++...| +..+ .+.|++.++.++.+.+. .++|||++|||+++.|+.
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 689999999999999999999999999864333 3333 46678888877777653 269999999999999999
Q ss_pred HHHHcCCCEEEEchhHHH--------------------hhhc-------------------------CChH-------HH
Q 017434 300 KALALGASGVFVGRPVPF--------------------SLAV-------------------------DGEA-------GV 327 (371)
Q Consensus 300 kal~lGAd~V~iGr~~l~--------------------~~~~-------------------------~G~~-------gv 327 (371)
|||++||++||+|++|.- +++. +|.+ .+
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999998742 2211 0110 18
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 328 RKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 328 ~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
.+++..|...|+..|.++|..+|.||+.
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~ 380 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKI 380 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHh
Confidence 8999999999999999999999999985
No 29
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.4e-23 Score=199.26 Aligned_cols=252 Identities=23% Similarity=0.257 Sum_probs=198.7
Q ss_pred ecCcccCcceeecccccccccCChHhHHHHHHHHHcCC-cEEecCCCCC-C--------HHHHhcc-CCCceEEEEeecC
Q 017434 68 VLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS-S--------VEEVSST-GPGIRFFQLYVTK 136 (371)
Q Consensus 68 i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~-~~~~s~~~~~-~--------~eei~~~-~~~~~~~QLy~~~ 136 (371)
+....+..++++|||.+.+ |..+++.++++|. ..++|+|.+. . +...... ...|..+||+. .
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-s 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGG-S 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecC-C
Confidence 4556778999999999876 8899999999999 8888988432 1 1111111 13689999986 7
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
|++.+.+..+.+++.|++.|++|++||.. +++.. +.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------Ccchhhc--CCHHHH
Confidence 99999999999999999999999999974 11111 1233444 578888
Q ss_pred HHHHHHHHhhcC-CCEEEEEccC--------HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 217 WKDVKWLQTITS-LPILVKGVLT--------AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 217 ~~~i~~ir~~~~-~pv~vK~v~~--------~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
.+.|+.+++.++ +||.||.... .+-++.+.++|++.++|+++...+.+.++..|+.+.++++.++. +|||
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~-ipvi 202 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS-IPVI 202 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC-CeEE
Confidence 899999999995 9999998632 24578899999999999554444667788999999999999943 9999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEch-----hHHHhh---hcCCh---HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 288 LDGGVRRGTDVFKALA-LGASGVFVGR-----PVPFSL---AVDGE---AGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 288 a~GGI~~~~dv~kal~-lGAd~V~iGr-----~~l~~~---~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
++|+|.+.+|+.+.|+ .|+|+||+|| |+++.. ...|+ ....+.++.+..+++...+..|...+..+++
T Consensus 203 ~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~ 282 (323)
T COG0042 203 ANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred eCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999 5899999999 555542 12343 5678899999999999999999778888888
Q ss_pred cceec
Q 017434 356 NHIVT 360 (371)
Q Consensus 356 ~~l~~ 360 (371)
+..+.
T Consensus 283 h~~~~ 287 (323)
T COG0042 283 HLGYY 287 (323)
T ss_pred HHHHH
Confidence 86553
No 30
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.90 E-value=5e-22 Score=193.20 Aligned_cols=239 Identities=19% Similarity=0.211 Sum_probs=172.1
Q ss_pred ccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCC----------------------------
Q 017434 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA---------------------------- 113 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~---------------------------- 113 (371)
|++|+++|.++++||++|.-+... +....+.+...|..+++. |..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 678999999999999997633322 334555577887766652 211
Q ss_pred ------CCCHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017434 114 ------TSSVE----EVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180 (371)
Q Consensus 114 ------~~~~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~ 180 (371)
+..++ ++.+. .+.|.++|+.. .+.+.+.+.++.++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNG-VSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 01111 22221 13578889865 5677778899999999999999999874210 0
Q ss_pred ccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccC----HHHHHHHHHhCCCEEEEe
Q 017434 181 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~----~e~a~~a~~~Gad~I~vs 256 (371)
+. . +. ..+....+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++
T Consensus 141 ~~--~----------------g~-------~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI--S----------------GA-------EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc--c----------------cc-------hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 0012346889999999999999998744 356788999999999999
Q ss_pred CCCC-cCCC---------C---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 257 NHGA-RQLD---------Y---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 257 ~~gg-~~~~---------~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
|+.. ...| + |+ -.+..+.++++.+ ++|||++|||+|++|+.+++.+|||+|++||++++
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~-- 271 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR-- 271 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh--
Confidence 9742 1111 1 11 1345566666655 79999999999999999999999999999999986
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 320 AVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 320 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
.|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 272 --~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 --HGPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred --cCch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 3553 678899999999999999999999984
No 31
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.90 E-value=8.3e-22 Score=189.93 Aligned_cols=239 Identities=21% Similarity=0.230 Sum_probs=179.5
Q ss_pred ccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCC--------------------------C
Q 017434 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT--------------------------S 115 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~--------------------------~ 115 (371)
|++|+++|.++++||++|+-... .+..+++.+.+.|..+++. |... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999983222 1346777888888876653 3211 1
Q ss_pred CHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017434 116 SVE----EVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNY 187 (371)
Q Consensus 116 ~~e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~aG-~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 187 (371)
.++ ++.+. ...|..+||.. .+.+...+.+++++++| +++|.+|+.||... ++ +
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~-------~g-g---------- 135 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVK-------HG-G---------- 135 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCC-------CC-c----------
Confidence 122 22221 13578999975 57888889999999999 99999999998631 00 0
Q ss_pred cccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHH----HHHHHHHhCCCEEEEeCCC-CcC
Q 017434 188 EGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE----DASLAIQYGAAGIIVSNHG-ARQ 262 (371)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e----~a~~a~~~Gad~I~vs~~g-g~~ 262 (371)
..+. .++.+.++.++++|+.+++||++|+..+.+ .++.+.++|+|+|+++|.. +..
T Consensus 136 -----------------~~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 136 -----------------MAFG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 0000 245567899999999999999999986543 3788899999999997731 110
Q ss_pred --C-------------CCc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCC
Q 017434 263 --L-------------DYV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG 323 (371)
Q Consensus 263 --~-------------~~~----~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G 323 (371)
. ..+ +..+..+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++ +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~ 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----D 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----C
Confidence 0 011 22567788888877 79999999999999999999999999999999986 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 324 EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 324 ~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+ .+++.++++++.+|...|+++++|+++.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4 4778899999999999999999999864
No 32
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.90 E-value=4.5e-22 Score=192.10 Aligned_cols=243 Identities=18% Similarity=0.161 Sum_probs=174.4
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcC-CcEEecCCCCC--------CHHHHhc------cC--CCceEEEEeecCC
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAG-TIMTLSSWATS--------SVEEVSS------TG--PGIRFFQLYVTKH 137 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G-~~~~~s~~~~~--------~~eei~~------~~--~~~~~~QLy~~~d 137 (371)
+|+++|||++.+ |.++++.+++.| ..+++|+|-+. ....+.+ .. +.|..+||+. .|
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g-~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLG-QY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEecc-CC
Confidence 589999999987 889999999999 78888888431 1111111 11 2689999995 79
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCH
Q 017434 138 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 217 (371)
Q Consensus 138 ~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (371)
++.+.+.++++++.|++.|.||++||+. ++... +.+..+. .++.+..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~----------------g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS----------------GGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC----------------CCchHhh--cCHHHHH
Confidence 9999999999999999999999999873 11100 1122233 4677788
Q ss_pred HHHHHHHhhc--CCCEEEEEccC-------HHHHHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEE
Q 017434 218 KDVKWLQTIT--SLPILVKGVLT-------AEDASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 218 ~~i~~ir~~~--~~pv~vK~v~~-------~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~vi 287 (371)
++++.+++.+ ++||.||.... .+.++.+.++|+|.|+|+++...+.+.+++ .++.+.++++.+ ++|||
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 8999999988 49999997532 244688899999999996544345556654 789999999987 79999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEch-----hHHHhhhcCCh--HHHHHHHHHHHHHHHHHHHHhCC-CCHhhhcccce
Q 017434 288 LDGGVRRGTDVFKALA-LGASGVFVGR-----PVPFSLAVDGE--AGVRKVLQMLRDEFELTMALSGC-RSLKEITRNHI 358 (371)
Q Consensus 288 a~GGI~~~~dv~kal~-lGAd~V~iGr-----~~l~~~~~~G~--~gv~~~l~~l~~el~~~m~~~G~-~~l~~l~~~~l 358 (371)
++|||.|++|+.++++ .|||+||||| |+++.....|. ....+.++.+.++++......+. ..+.++|++..
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~ 278 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLG 278 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 9999999999999997 6899999999 45555333232 23445666666655432222221 23556666543
Q ss_pred e
Q 017434 359 V 359 (371)
Q Consensus 359 ~ 359 (371)
+
T Consensus 279 ~ 279 (312)
T PRK10550 279 Y 279 (312)
T ss_pred H
Confidence 3
No 33
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.90 E-value=6.9e-22 Score=192.00 Aligned_cols=247 Identities=21% Similarity=0.220 Sum_probs=181.6
Q ss_pred cCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCC-CH-------HHHhccCC--CceEEEEeecCCh
Q 017434 69 LGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV-------EEVSSTGP--GIRFFQLYVTKHR 138 (371)
Q Consensus 69 ~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~-~~-------eei~~~~~--~~~~~QLy~~~d~ 138 (371)
.|..+..|+++|||.+.+ +.++++.++++|..++.++|-+. ++ .......+ .|..+||.. .++
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g-~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFG-SDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeC-CCH
Confidence 567889999999999876 88999999999998888887321 11 12222222 688999985 789
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHH
Q 017434 139 NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 218 (371)
Q Consensus 139 ~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (371)
+.+.+.+++++++|+++|.+|+.||.. +|.. . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~---~---------------------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK---K---------------------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC---C---------------------------CccchHh--CCHHHHHH
Confidence 999999999999999999999999842 1110 0 0011121 35667788
Q ss_pred HHHHHHhhcCCCEEEEEcc--------CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017434 219 DVKWLQTITSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 219 ~i~~ir~~~~~pv~vK~v~--------~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G 290 (371)
+++.+++.+++||.+|... ..+.++.+.++|+|+|++++....+...+++.++.+.++++.+ ++||+++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 9999999999999999852 1345788899999999996542223344567888999999887 69999999
Q ss_pred CCCCHHHHHHHHH-cCCCEEEEchhHHHh-----hh----cCC----hHHHHHHHHHHHHHHHHHHHHhCC-CCHhhhcc
Q 017434 291 GVRRGTDVFKALA-LGASGVFVGRPVPFS-----LA----VDG----EAGVRKVLQMLRDEFELTMALSGC-RSLKEITR 355 (371)
Q Consensus 291 GI~~~~dv~kal~-lGAd~V~iGr~~l~~-----~~----~~G----~~gv~~~l~~l~~el~~~m~~~G~-~~l~~l~~ 355 (371)
||.+++|+.++++ .|||+||+||+++.. .. ..| +....+.++.+.++++...+..|. ..+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 789999999976532 11 112 124556777788888877777774 24666665
Q ss_pred cc
Q 017434 356 NH 357 (371)
Q Consensus 356 ~~ 357 (371)
+.
T Consensus 280 ~~ 281 (319)
T TIGR00737 280 HI 281 (319)
T ss_pred HH
Confidence 53
No 34
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.89 E-value=3.4e-21 Score=185.24 Aligned_cols=237 Identities=20% Similarity=0.210 Sum_probs=172.3
Q ss_pred ceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecC-CCCC--------------------------CH
Q 017434 65 TTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WATS--------------------------SV 117 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~-~~~~--------------------------~~ 117 (371)
+|+++|.++++||++|+- ..+ ....+++.+...|..+++.. .+.. .+
T Consensus 1 ~~~~~G~~~~nP~~~aag-~~~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASG-TFG-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCC-CCC-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 578999999999999952 111 12345554444447766542 2110 11
Q ss_pred H----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017434 118 E----EVSST---GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGL 190 (371)
Q Consensus 118 e----ei~~~---~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 190 (371)
+ ++.+. ...|..+||.. .+.+...+.+++++++|++++.+|+.||....+
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~---------------------- 131 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGG---------------------- 131 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC----------------------
Confidence 2 22221 23678999985 577888899999999999999999999864110
Q ss_pred ccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH----HHHHHHHHhCCCEEEEeCCC-CcCC--
Q 017434 191 YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVSNHG-ARQL-- 263 (371)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~----e~a~~a~~~Gad~I~vs~~g-g~~~-- 263 (371)
+..+. .++.+..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+- ++..
T Consensus 132 -------------g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 132 -------------GMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------ccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 00000 23456678899999999999999986443 44778999999999998741 2110
Q ss_pred -------------CCcc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHH
Q 017434 264 -------------DYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAG 326 (371)
Q Consensus 264 -------------~~~~----~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~g 326 (371)
..++ ..+..+.++++.+ ++|||++|||.+++|+.+++++|||+|++||++++ ++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch--
Confidence 1122 2457788888777 79999999999999999999999999999999986 34
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 327 VRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 327 v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
.+++.++++++.+|+..|+.+++|+++.
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g~ 295 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4678899999999999999999999863
No 35
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.89 E-value=1.9e-21 Score=190.07 Aligned_cols=241 Identities=19% Similarity=0.184 Sum_probs=171.8
Q ss_pred ccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCC----------------------------
Q 017434 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA---------------------------- 113 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~---------------------------- 113 (371)
|++|+++|.++++||++|.-.... .....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988844322 223344477777665542 111
Q ss_pred -------CCCHHH----Hh---ccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCC
Q 017434 114 -------TSSVEE----VS---STGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLP 179 (371)
Q Consensus 114 -------~~~~ee----i~---~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p 179 (371)
+..+++ +. +..+.|.+.|+.. .+.+...+.+++++++|++++.+|+.||...
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~------------- 141 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD------------- 141 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC-------------
Confidence 011221 11 1123578899976 5666777888999999999999999875320
Q ss_pred CccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccC----HHHHHHHHHhCCCEEEE
Q 017434 180 PHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIV 255 (371)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~----~e~a~~a~~~Gad~I~v 255 (371)
.... +. ..+...++.++++++.+++||++|.... .+.++.+.++|+|+|++
T Consensus 142 --~~~~----------------g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 142 --PDIS----------------GA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --CCCc----------------cc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 0000 00 0012247889999999999999997643 34577889999999999
Q ss_pred eCCCC-cCC---------CCc---c----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 256 SNHGA-RQL---------DYV---P----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 256 s~~gg-~~~---------~~~---~----~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+|+.. ... .++ + -.+..+.++++.+ ++|||++|||+|++|+.+++.+||++|++||++++
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~- 273 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR- 273 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh-
Confidence 98632 111 111 1 1345566666665 79999999999999999999999999999999987
Q ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 319 LAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 319 ~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
+|+ .+++.+.+||+.+|...|+++++|+++...
T Consensus 274 ---~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~~ 306 (334)
T PRK07565 274 ---HGP----DYIGTILRGLEDWMERHGYESLQQFRGSMS 306 (334)
T ss_pred ---hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhcccc
Confidence 254 478899999999999999999999998543
No 36
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.89 E-value=1.2e-21 Score=189.56 Aligned_cols=241 Identities=17% Similarity=0.174 Sum_probs=172.8
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCC-cEEecCCCCC------CHHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 146 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 146 (371)
|+++|||.+.+ |.++++.++++|. .+++|+|.+. ...+.....+ .|..+||+. .|++.+.+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGG-SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEcc-CCHHHHHHHHH
Confidence 79999999887 8899999999998 6888888431 1122322223 789999995 79999999999
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhh
Q 017434 147 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 226 (371)
Q Consensus 147 ~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~ 226 (371)
.+++.|++.|.||++||..- +.. .+.+..++ .+|++..++++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~~----------------~g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQN----------------GNFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hCC----------------CCeehHhh--cCHHHHHHHHHHHHHH
Confidence 99999999999999998741 000 01122333 4677788899999999
Q ss_pred cCCCEEEEEccC------H----HHHHHHHHhCCCEEEEeCCCC-cCCC-------CccchHHHHHHHHHHhcCCCcEEE
Q 017434 227 TSLPILVKGVLT------A----EDASLAIQYGAAGIIVSNHGA-RQLD-------YVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 227 ~~~pv~vK~v~~------~----e~a~~a~~~Gad~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~i~via 288 (371)
+++||.+|.... . +.++.+.++|++.|+|+++.. .+.. ..+..++.+.++++.++ ++|||+
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~-~ipVi~ 200 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP-HLTIEI 200 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC-CCcEEE
Confidence 999999998641 1 236788899999999954321 1222 12336788888888764 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchh-----HHHhhhc----CC---hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRP-----VPFSLAV----DG---EAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~-----~l~~~~~----~G---~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|||++.+|+.+.+. |||+|||||+ |+|.... +| .....+.++.+.++++..... ...+.+++++
T Consensus 201 NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~rk~ 277 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHITRH 277 (318)
T ss_pred ECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHH
Confidence 999999999999996 9999999994 5554221 12 123456667777777764433 2467777777
Q ss_pred ceec
Q 017434 357 HIVT 360 (371)
Q Consensus 357 ~l~~ 360 (371)
..+.
T Consensus 278 ~~~y 281 (318)
T TIGR00742 278 LLGL 281 (318)
T ss_pred HHHH
Confidence 5543
No 37
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.88 E-value=4.4e-21 Score=188.95 Aligned_cols=252 Identities=19% Similarity=0.246 Sum_probs=178.8
Q ss_pred CCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecC-CC--C---------------------
Q 017434 59 VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WA--T--------------------- 114 (371)
Q Consensus 59 ~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~-~~--~--------------------- 114 (371)
.+..|++|+|+|.++++||++|.-... ......+.+.++|...++.- .. .
T Consensus 6 ~~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~ 79 (385)
T PLN02495 6 ASEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSA 79 (385)
T ss_pred cCCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCccccccc
Confidence 355789999999999999999984332 23455556566677666521 10 0
Q ss_pred --C-------------CHH----HHh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH
Q 017434 115 --S-------------SVE----EVS---STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREAD 171 (371)
Q Consensus 115 --~-------------~~e----ei~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d 171 (371)
. +++ ++. +..+ .|.+..+....+.+...+++++++++|++++.+|+.||...
T Consensus 80 ~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~----- 154 (385)
T PLN02495 80 KGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM----- 154 (385)
T ss_pred ccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-----
Confidence 0 122 222 1223 47788886556888889999999999999999999998631
Q ss_pred hhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH----HHHHHHHH
Q 017434 172 IKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQ 247 (371)
Q Consensus 172 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~----e~a~~a~~ 247 (371)
+ .+.. +..+. .+++...+.++++++.+++||++|+..+. +.++.+.+
T Consensus 155 -------~----~r~~----------------g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~ 205 (385)
T PLN02495 155 -------P----ERKM----------------GAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALK 205 (385)
T ss_pred -------C----cCcc----------------chhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHH
Confidence 0 0000 00111 24555667789999989999999998554 34677899
Q ss_pred hCCCEEEEeCCCC--cCC----------------CCc---cc----hHHHHHHHHHHhc----CCCcEEEecCCCCHHHH
Q 017434 248 YGAAGIIVSNHGA--RQL----------------DYV---PA----TVMALEEVVQAAK----GRVPVFLDGGVRRGTDV 298 (371)
Q Consensus 248 ~Gad~I~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~i~via~GGI~~~~dv 298 (371)
+|+|+|++.|+-. ... .+| ++ .+..+.++++.+. .++|||+.|||.+++|+
T Consensus 206 ~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da 285 (385)
T PLN02495 206 SGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDA 285 (385)
T ss_pred hCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHH
Confidence 9999999998522 101 111 11 2234455555542 25899999999999999
Q ss_pred HHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 299 FKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 299 ~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
++++.+||++|++|+.+++ +|+. +++.+.+||+.+|...|+++++|+++..+
T Consensus 286 ~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 286 AEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 9999999999999999886 4663 67889999999999999999999997654
No 38
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.88 E-value=6.3e-21 Score=183.63 Aligned_cols=215 Identities=23% Similarity=0.244 Sum_probs=154.4
Q ss_pred ccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCCC--------------------------
Q 017434 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS-------------------------- 115 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~~-------------------------- 115 (371)
|++|+|+|+++++||++|+-... .+....+.+.++|..+++. |....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 67999999999999999993222 1344555555557655542 11100
Q ss_pred -------CHH----HHh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017434 116 -------SVE----EVS---STGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP 180 (371)
Q Consensus 116 -------~~e----ei~---~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~ 180 (371)
.++ ++. +..+ .|...|++...+.+.+.+.++++++.|++++.+|+.||..-.
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~------------- 141 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMP------------- 141 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-------------
Confidence 011 121 1222 578999987548888889999999899999999999987410
Q ss_pred ccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH----HHHHHHHHhCCCEEEEe
Q 017434 181 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVS 256 (371)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~----e~a~~a~~~Gad~I~vs 256 (371)
.+. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 142 ---~~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 142 ---ERG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ---CCC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 000 011111 34556678899999999999999987543 56788999999999988
Q ss_pred CCCCc---------------------CCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 017434 257 NHGAR---------------------QLDYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 257 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~i 311 (371)
|+... +...|++ +++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1122333 4788999998886579999999999999999999999999999
Q ss_pred chhHHH
Q 017434 312 GRPVPF 317 (371)
Q Consensus 312 Gr~~l~ 317 (371)
||.+++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999886
No 39
>PLN02826 dihydroorotate dehydrogenase
Probab=99.86 E-value=1.3e-19 Score=180.10 Aligned_cols=123 Identities=28% Similarity=0.461 Sum_probs=100.7
Q ss_pred cCCCEEEEEc--cCHHH----HHHHHHhCCCEEEEeCCCC-c----------CCCC---ccc----hHHHHHHHHHHhcC
Q 017434 227 TSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGA-R----------QLDY---VPA----TVMALEEVVQAAKG 282 (371)
Q Consensus 227 ~~~pv~vK~v--~~~e~----a~~a~~~Gad~I~vs~~gg-~----------~~~~---~~~----~~~~l~~i~~~~~~ 282 (371)
.++||++|+. .+.++ ++.+.++|+|+|+++|+-- + +..+ |++ +++.+.++.+.+++
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995 44444 7889999999999998421 1 1112 222 56788888888877
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 017434 283 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 357 (371)
Q Consensus 283 ~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 357 (371)
++|||++|||.+++|+++++.+||++|+++|+++| +|+ .++..+++||..+|...|+++++|+++..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp----~~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGP----ALIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCH----HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 365 37788999999999999999999998743
No 40
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.86 E-value=3.4e-20 Score=186.62 Aligned_cols=248 Identities=21% Similarity=0.219 Sum_probs=176.3
Q ss_pred CccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCC----C----------------------
Q 017434 62 IDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWA----T---------------------- 114 (371)
Q Consensus 62 ~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~----~---------------------- 114 (371)
.|++|+|+|+++++||++|.-.. ... ...+.+.. ++|..+++. |.. +
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~---~~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPP---TNK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCC---CCC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 37899999999999999997322 111 22334433 356554431 110 0
Q ss_pred -----CCHH----HH---hccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC
Q 017434 115 -----SSVE----EV---SSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRL-GRREADIKNRFVLPP 180 (371)
Q Consensus 115 -----~~~e----ei---~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~-g~r~~d~~~~~~~p~ 180 (371)
..++ .+ .+..+ .|.++||....+.+.+.+.++.++++|+++|.+|+.||.. ..| ++
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------~~---- 145 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------GM---- 145 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------CC----
Confidence 0112 11 11222 5678999864478888899999999999999999999862 100 00
Q ss_pred ccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH----HHHHHHHHhCCCEEEEe
Q 017434 181 HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA----EDASLAIQYGAAGIIVS 256 (371)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~----e~a~~a~~~Gad~I~vs 256 (371)
+..+. .++....+.++++++.+++||+||+..+. +.++.+.++|+|+|++.
T Consensus 146 -----------------------g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 146 -----------------------GSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----------------------ccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 00111 34556678899999999999999997542 45788999999999976
Q ss_pred CCC-C-----------------c---CCCCccc----hHHHHHHHHHHhc-CCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017434 257 NHG-A-----------------R---QLDYVPA----TVMALEEVVQAAK-GRVPVFLDGGVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 257 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~i~via~GGI~~~~dv~kal~lGAd~V~ 310 (371)
|.- + + +...|++ .++.+.++++.++ .++|||++|||.+++|+++++.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 641 1 1 1122444 5788888888764 27999999999999999999999999999
Q ss_pred EchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 311 VGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 311 iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
+||.+++ +|+ .++..+.++|+.+|...|+.+++++.+..+
T Consensus 281 i~ta~~~----~gp----~ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQ----YGF----RIVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeecc----CCc----hhHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 9999886 355 367889999999999999999999986533
No 41
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.86 E-value=1e-19 Score=185.71 Aligned_cols=144 Identities=26% Similarity=0.350 Sum_probs=119.8
Q ss_pred ccCCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc------CCCCccchHHHHHHHHHHhcC-C
Q 017434 212 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR------QLDYVPATVMALEEVVQAAKG-R 283 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~~-~ 283 (371)
+..+.|+.|+++|+.+ ++||+++.+.+.++++.+.++|+|+|.++.+.|. ..+.|.|++.++.++.+.+.. +
T Consensus 265 ~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 265 NSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG 344 (495)
T ss_pred CchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC
Confidence 4445688999999997 6899999999999999999999999999755442 245678888898888876642 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH--------------------hhhc------C---------------
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV------D--------------- 322 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~--------------------~~~~------~--------------- 322 (371)
+|||++|||+++.|+.||+++||++||+|+.|.- |++. .
T Consensus 345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~ 424 (495)
T PTZ00314 345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV 424 (495)
T ss_pred CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence 9999999999999999999999999999998742 2211 0
Q ss_pred --Ch-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 323 --GE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 323 --G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
|. ..+.+++..+..+|+..|.++|..++.||+.
T Consensus 425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1388999999999999999999999999987
No 42
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.86 E-value=4.5e-21 Score=185.31 Aligned_cols=241 Identities=23% Similarity=0.281 Sum_probs=161.9
Q ss_pred eecccccccccCChHhHHHHHHHHHcCCc-EEecCCCCC-----C---HHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017434 78 MIAPTAFQKMAHPEGECATARAASAAGTI-MTLSSWATS-----S---VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVK 146 (371)
Q Consensus 78 ~iAPm~~~~~~~~~~e~~~a~aa~~~G~~-~~~s~~~~~-----~---~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~ 146 (371)
++|||.+.+ |.++++.++++|.. .++++|.+. . ..+.....+ .|..+||.. .|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g-~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFG-NDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEee-ccHHHHHHHHH
Confidence 589998876 88999999999998 888888431 1 111112222 689999986 89999999999
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhh
Q 017434 147 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 226 (371)
Q Consensus 147 ~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~ 226 (371)
.+.+.|++.|+||++||.. ++... +.+..++ .+|+...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhh--cChHHhhHHHHhhhcc
Confidence 9988999999999999974 11111 1233344 4677777899999999
Q ss_pred cCCCEEEEEcc--------CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017434 227 TSLPILVKGVL--------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 298 (371)
Q Consensus 227 ~~~pv~vK~v~--------~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv 298 (371)
+++||.+|... +.+-++.+.++|++.|+|+.+...|.+.+++.|+.++++++.+ ++|||++|||.|.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999863 1344788999999999997766667778899999999999988 6999999999999999
Q ss_pred HHHHHc-CCCEEEEch-----hHHHhh---hcCC----hHHHHHHHHHHHHHHHHHHHHhC-CCCHhhhcccceec
Q 017434 299 FKALAL-GASGVFVGR-----PVPFSL---AVDG----EAGVRKVLQMLRDEFELTMALSG-CRSLKEITRNHIVT 360 (371)
Q Consensus 299 ~kal~l-GAd~V~iGr-----~~l~~~---~~~G----~~gv~~~l~~l~~el~~~m~~~G-~~~l~~l~~~~l~~ 360 (371)
.+.+.. |+|+||+|| ||+|.. ...| ...+.+.++.+.++++......| ...+..++++..+.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 999995 999999999 566652 1111 11156677888888887777776 45677777776554
No 43
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.86 E-value=1.1e-19 Score=173.33 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=114.8
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEEEccCHHH----HHHHHHhCCCEEEEeCCCCcC--------------CCC---cc---
Q 017434 212 DRSLNWKDVKWLQTITSLPILVKGVLTAED----ASLAIQYGAAGIIVSNHGARQ--------------LDY---VP--- 267 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~----a~~a~~~Gad~I~vs~~gg~~--------------~~~---~~--- 267 (371)
+++...+.++++++.+++||++|+..+.++ |+.+.++|+|+|++.|.-... ..+ |+
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ik 224 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLK 224 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccch
Confidence 455556778899999999999999876544 788999999999999853210 012 22
Q ss_pred -chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhC
Q 017434 268 -ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSG 346 (371)
Q Consensus 268 -~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 346 (371)
-.+..++++.+.+.+++|||+.|||.|++|+++.+.+||++|++|+++++ +|+ .+++.+.++|.++|...|
T Consensus 225 p~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp----~i~~~I~~~l~~~l~~~g 296 (310)
T COG0167 225 PIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGP----GIVKEIIKGLARWLEEKG 296 (310)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCc----hHHHHHHHHHHHHHHHcC
Confidence 25677888888887789999999999999999999999999999999987 366 377899999999999999
Q ss_pred CCCHhhhcccce
Q 017434 347 CRSLKEITRNHI 358 (371)
Q Consensus 347 ~~~l~~l~~~~l 358 (371)
++|++|+++...
T Consensus 297 ~~si~d~iG~~~ 308 (310)
T COG0167 297 FESIQDIIGSAL 308 (310)
T ss_pred CCCHHHHhchhc
Confidence 999999987654
No 44
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.85 E-value=5.2e-20 Score=187.71 Aligned_cols=141 Identities=23% Similarity=0.312 Sum_probs=118.6
Q ss_pred CHHHHHHHHhhcCCCEEEE--EccCHHHHHHHHHhCCCEEEEeCCCC-----c-CCCCccchHHHHHHHHHHhc------
Q 017434 216 NWKDVKWLQTITSLPILVK--GVLTAEDASLAIQYGAAGIIVSNHGA-----R-QLDYVPATVMALEEVVQAAK------ 281 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK--~v~~~e~a~~a~~~Gad~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~~------ 281 (371)
..+.|+++|+.++.++.|+ .+.++++++.++++|||+|+|++|+| + +.+.++|++.++.++++++.
T Consensus 270 ~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~ 349 (502)
T PRK07107 270 QKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEET 349 (502)
T ss_pred HHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhc
Confidence 4678999999986544444 48999999999999999999999998 4 57788999999999988762
Q ss_pred -CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc-------------------
Q 017434 282 -GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------------------- 321 (371)
Q Consensus 282 -~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------------------- 321 (371)
.++|||+||||+++.|++|||++|||+||+||+|- +|++.
T Consensus 350 g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~ 429 (502)
T PRK07107 350 GVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSF 429 (502)
T ss_pred CCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhcccccccccccccc
Confidence 24999999999999999999999999999999883 22221
Q ss_pred -CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 322 -DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 322 -~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|. ..+.+++..|...|+..|.++|..++.||+..
T Consensus 430 ~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 430 EEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred CCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 111 12889999999999999999999999999854
No 45
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.85 E-value=1e-19 Score=177.50 Aligned_cols=246 Identities=19% Similarity=0.173 Sum_probs=175.1
Q ss_pred cccCcceeecccccccccCChHhHHHHHHHHHcCC-cEEecCCCCC------CHHHHhccCC--CceEEEEeecCChHHH
Q 017434 71 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGT-IMTLSSWATS------SVEEVSSTGP--GIRFFQLYVTKHRNVD 141 (371)
Q Consensus 71 ~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~QLy~~~d~~~~ 141 (371)
.....|+++|||.+.+ |.++++.|+++|. .+++|+|.+. ...+.....+ .|..+||+. .|++.+
T Consensus 7 ~~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g-~~p~~~ 79 (333)
T PRK11815 7 KLPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGG-SDPADL 79 (333)
T ss_pred cCCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeC-CCHHHH
Confidence 3446799999999886 8899999999997 6888887321 1122222222 789999986 799999
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.+.+++++++|++.|.||++||..-.|. . +.+..+. .++.+..++++
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~----~---------------------------~~Gs~L~--~~p~~~~eiv~ 126 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQN----G---------------------------RFGACLM--AEPELVADCVK 126 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccC----C---------------------------CeeeHHh--cCHHHHHHHHH
Confidence 9999999999999999999998741110 0 0111222 36777889999
Q ss_pred HHHhhcCCCEEEEEccC----------HHHHHHHHHhCCCEEEEeCCCC-cCCC-------CccchHHHHHHHHHHhcCC
Q 017434 222 WLQTITSLPILVKGVLT----------AEDASLAIQYGAAGIIVSNHGA-RQLD-------YVPATVMALEEVVQAAKGR 283 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v~~----------~e~a~~a~~~Gad~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~ 283 (371)
.+++.+++||.+|.... .+-++.+.++|+|+|+|++..+ .+.. ..+..++.+.++++.+. +
T Consensus 127 avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~-~ 205 (333)
T PRK11815 127 AMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP-H 205 (333)
T ss_pred HHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC-C
Confidence 99999999999997421 2336778899999999964322 1111 12346788888887643 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH-----hhh---cCCh----HHHHHHHHHHHHHHHHHHHHhCCCCHh
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF-----SLA---VDGE----AGVRKVLQMLRDEFELTMALSGCRSLK 351 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~-----~~~---~~G~----~gv~~~l~~l~~el~~~m~~~G~~~l~ 351 (371)
+|||++|||++.+|+.++++ |||+|||||+++. ... ..|. ....++++.+.++++..... |. .+.
T Consensus 206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ 282 (333)
T PRK11815 206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLN 282 (333)
T ss_pred CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHH
Confidence 99999999999999999997 7999999996653 221 1122 23556677777777776663 43 477
Q ss_pred hhcccceec
Q 017434 352 EITRNHIVT 360 (371)
Q Consensus 352 ~l~~~~l~~ 360 (371)
.++++..+.
T Consensus 283 ~~rk~~~~y 291 (333)
T PRK11815 283 HITRHMLGL 291 (333)
T ss_pred HHHHHHHHH
Confidence 777765443
No 46
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.84 E-value=4e-19 Score=174.20 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=158.9
Q ss_pred CCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCCC----------------------
Q 017434 59 VSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS---------------------- 115 (371)
Q Consensus 59 ~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~~---------------------- 115 (371)
..+++++|+++|.++.+||++|. |.. ++....+.+.++|..+++. |....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45788999999999999999877 322 2445667788999877753 22110
Q ss_pred ------CH----HHHhcc-CCCceEEEEeecC------ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC
Q 017434 116 ------SV----EEVSST-GPGIRFFQLYVTK------HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL 178 (371)
Q Consensus 116 ------~~----eei~~~-~~~~~~~QLy~~~------d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~ 178 (371)
.+ +++.+. ...|.++++.... ..+...++++++.+ +++++.+|+.||....
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g----------- 184 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPG----------- 184 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCC-----------
Confidence 01 122221 1235677775421 23344445555443 4788888887775310
Q ss_pred CCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcC-----CCEEEEEccC------HHHHHHHHH
Q 017434 179 PPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS-----LPILVKGVLT------AEDASLAIQ 247 (371)
Q Consensus 179 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~-----~pv~vK~v~~------~e~a~~a~~ 247 (371)
.+. ..++....+.++++|+.++ +||++|+... .+.++.+.+
T Consensus 185 -----~~~-----------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 185 -----LRD-----------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred -----ccc-----------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 000 0123334578999999886 9999999743 234678889
Q ss_pred hCCCEEEEeCCCC-------------cCCCCccc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017434 248 YGAAGIIVSNHGA-------------RQLDYVPA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 248 ~Gad~I~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~ 310 (371)
+|+|+|+++|+-. +....|++ .++.+.++++.+++++|||++|||++++|+.+++.+|||+|+
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~ 316 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQ 316 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHH
Confidence 9999999998521 01112232 566788888887667999999999999999999999999999
Q ss_pred EchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhC
Q 017434 311 VGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSG 346 (371)
Q Consensus 311 iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G 346 (371)
+||++++. |+. +++.+++||+.+|...|
T Consensus 317 v~~~~~~~----gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 317 IYSGLIYE----GPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHh----Cch----HHHHHHHHHHHHHHhcC
Confidence 99999862 553 67788999999998875
No 47
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.84 E-value=4.8e-19 Score=171.25 Aligned_cols=241 Identities=18% Similarity=0.172 Sum_probs=167.8
Q ss_pred ccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCC--------------------------C
Q 017434 63 DMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT--------------------------S 115 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~--------------------------~ 115 (371)
|++|+++|.++++||++|.-... .+....+.+.+.|..+++. |... .
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67999999999999999984321 1344555688888777653 2211 1
Q ss_pred CHH----HHhc---cC-CCceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017434 116 SVE----EVSS---TG-PGIRFFQLYVTKHRNVDAQLVKRAERAG-FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKN 186 (371)
Q Consensus 116 ~~e----ei~~---~~-~~~~~~QLy~~~d~~~~~~~~~~a~~aG-~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~ 186 (371)
.++ ++.+ .. ..|.+.++.. .+.+.+.+.+++++++| ++++.+|+.||.... . ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G-~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-------------~---~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVG-LSPEETHTILKKIQASDFNGLVELNLSCPNVPG-------------K---PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEe-CcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-------------c---cc
Confidence 122 2221 11 1566777765 56677778888888888 899999999885210 0 00
Q ss_pred ccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH---HHHHHH---HHhCCCEEEEeCCC-
Q 017434 187 YEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA---EDASLA---IQYGAAGIIVSNHG- 259 (371)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~---e~a~~a---~~~Gad~I~vs~~g- 259 (371)
+ ..++....+.++++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 138 --------------------~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 --------------------I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred --------------------c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 013334567899999999999999997532 223333 35567777666531
Q ss_pred -Cc--------C-C-----CC---cc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 260 -AR--------Q-L-----DY---VP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 260 -g~--------~-~-----~~---~~----~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+. . . .+ |+ -.+..+.++.+.++.++|||++|||.+++|+++++.+||++||+|+++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 0 0 11 22 24566777777776679999999999999999999999999999999987
Q ss_pred hhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 318 SLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 318 ~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|+ .++..+.+||+.+|...|+++++|+++.
T Consensus 276 ----~gp----~~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ----EGP----AVFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----hCh----HHHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 255 3778899999999999999999999873
No 48
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.84 E-value=3.2e-19 Score=180.71 Aligned_cols=141 Identities=28% Similarity=0.384 Sum_probs=118.0
Q ss_pred CCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc-----C-CCCccchHHHHHHHHHHhc-CCCc
Q 017434 214 SLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----Q-LDYVPATVMALEEVVQAAK-GRVP 285 (371)
Q Consensus 214 ~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~i~ 285 (371)
...++.|+++|+.+ ++||+++.+.+.++++.+.++|+|+|.|+.+.|. . ..++.|++.++.++++.+. .++|
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vp 329 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIP 329 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCe
Confidence 44678899999995 8999999999999999999999999999866552 1 2467888999998887653 3799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc------------------------
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------------------------ 321 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------------------------ 321 (371)
||++|||+++.|+.|||++||++||+|+.|. +|++.
T Consensus 330 viadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~~~ 409 (450)
T TIGR01302 330 VIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVP 409 (450)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccccC
Confidence 9999999999999999999999999999873 12211
Q ss_pred CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhc
Q 017434 322 DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEIT 354 (371)
Q Consensus 322 ~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~ 354 (371)
+|. ..|.+++..|...|+..|.++|+.++.||+
T Consensus 410 egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 410 EGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred CceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 111 138899999999999999999999999986
No 49
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.84 E-value=2.6e-19 Score=181.43 Aligned_cols=145 Identities=26% Similarity=0.321 Sum_probs=119.7
Q ss_pred ccCCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC------CCCccchHHHHHHHHHHhcC-C
Q 017434 212 DRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------LDYVPATVMALEEVVQAAKG-R 283 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~~-~ 283 (371)
++....+.++++++.+ ++||++..+.+.+.++.+.++|+|+|.|+..+|+. ..+|.++..++.+++++... .
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444567799999987 79999987999999999999999999998877752 34578888888888765532 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH---------------------Hhhhc---------------------
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVP---------------------FSLAV--------------------- 321 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l---------------------~~~~~--------------------- 321 (371)
+|||++|||+++.|++|||++||++||+|+.|. +|++.
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999762 12211
Q ss_pred --CChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 322 --DGEAG-----------VRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 322 --~G~~g-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|.+| +.+++..|...|+..|.++|+.++.||+..
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~ 456 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER 456 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC
Confidence 23332 778999999999999999999999999865
No 50
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.84 E-value=9.1e-19 Score=178.88 Aligned_cols=142 Identities=23% Similarity=0.288 Sum_probs=115.5
Q ss_pred cCCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCC--cc---chHHHHHHHHHHhcC
Q 017434 213 RSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDY--VP---ATVMALEEVVQAAKG 282 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~--~~---~~~~~l~~i~~~~~~ 282 (371)
....|+.|+++|+.+ +.+|+++.+.+.++++.+.++|+|+|.|++|+|. +... +. +++..++++++..
T Consensus 273 ~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~-- 350 (505)
T PLN02274 273 SIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH-- 350 (505)
T ss_pred cHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc--
Confidence 345789999999998 5889889999999999999999999999987663 2211 22 2455566666654
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH--------------------hhhc---------------------
Q 017434 283 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF--------------------SLAV--------------------- 321 (371)
Q Consensus 283 ~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~--------------------~~~~--------------------- 321 (371)
++|||++|||+++.|+.|||++||++||+|+.|.- |++.
T Consensus 351 ~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v 430 (505)
T PLN02274 351 GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKI 430 (505)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCccccc
Confidence 79999999999999999999999999999998741 2211
Q ss_pred -CCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 322 -DGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 322 -~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
+|. ..+.+++..|...|+..|.++|+.++.||+..
T Consensus 431 ~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 431 AQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred CCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 111 12889999999999999999999999999876
No 51
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.82 E-value=8.3e-19 Score=179.36 Aligned_cols=141 Identities=26% Similarity=0.389 Sum_probs=117.9
Q ss_pred CHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeC-----CCCcCC-CCccchHHHHHHHHHHhc-CCCcEE
Q 017434 216 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSN-----HGARQL-DYVPATVMALEEVVQAAK-GRVPVF 287 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~-----~gg~~~-~~~~~~~~~l~~i~~~~~-~~i~vi 287 (371)
.++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++. |++++. .++.|+++++.++++++. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 457799999998 899999999999999999999999999853 333433 457899999999988763 369999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhhc------------------------CC
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLAV------------------------DG 323 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~~------------------------~G 323 (371)
++|||+++.|++|||++|||+||+|+.|- +|++. +|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999772 12211 11
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 324 E-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 324 ~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
. ..+.+++..+...|+..|.++|..++.||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 1 13889999999999999999999999999843
No 52
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.80 E-value=7e-18 Score=162.05 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=154.2
Q ss_pred eeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCC--------------------------CCH-
Q 017434 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT--------------------------SSV- 117 (371)
Q Consensus 66 ~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~--------------------------~~~- 117 (371)
++++|.++++||++|.-... .+....+.+.+.|..+++. |... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 47899999999999984322 3556667777788877753 2210 112
Q ss_pred ---HHHhcc------CCCceEEEEeecCChHHHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017434 118 ---EEVSST------GPGIRFFQLYVTKHRNVDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLK 185 (371)
Q Consensus 118 ---eei~~~------~~~~~~~QLy~~~d~~~~~~~~~~a~~a---G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~ 185 (371)
+++.+. ...|..+|+... .+...+.++++++. |++++.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 223221 136789999754 67777777877775 69999999999863100 0
Q ss_pred cccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH------HHHHHHHHh--CCCEEEEeC
Q 017434 186 NYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA------EDASLAIQY--GAAGIIVSN 257 (371)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~------e~a~~a~~~--Gad~I~vs~ 257 (371)
. + ..+++...+.++++++.+++||++|+.... +.++.+.+. |+|+|++.|
T Consensus 137 ~--------------------~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 P--------------------P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred c--------------------c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 0 023455668899999999999999997432 224556677 999999876
Q ss_pred CCC---------c-------CCCCccc-------hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 258 HGA---------R-------QLDYVPA-------TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 258 ~gg---------~-------~~~~~~~-------~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
.-+ + +..+|.+ .+..+.++++.+++++|||++|||.+++|+++++.+|||+||+||.
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 1 1112322 3455677777775469999999999999999999999999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 017434 315 VPFSLAVDGEAGVRKVLQMLRDEFELTM 342 (371)
Q Consensus 315 ~l~~~~~~G~~gv~~~l~~l~~el~~~m 342 (371)
+++ .|+. +++.+++||+.+|
T Consensus 275 ~~~----~gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGPK----VFARIEKELEDIW 294 (294)
T ss_pred hhh----cCch----HHHHHHHHHHhhC
Confidence 986 2553 6677788888764
No 53
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.80 E-value=4.5e-18 Score=165.79 Aligned_cols=248 Identities=17% Similarity=0.201 Sum_probs=163.0
Q ss_pred chhhHHHhHhccccceeeccc-cCCCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CC
Q 017434 35 DQWTLQENRNAFSRILFRPRI-LRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SW 112 (371)
Q Consensus 35 ~~~t~~~n~~~~~~~~l~pr~-l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~ 112 (371)
-|.+++-...+++-+...|-. .....+.|++|+++|.++++||++|. |.. ++....+.+.+.|..+++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAA-GFD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCc-CCC------CCHHHHHHHHHCCCcEEEEecc
Confidence 456666666777776666632 24567889999999999999998877 221 2344555555788776652 22
Q ss_pred CCC----------------------------C----HHHHhccC--CCceEEEEeecCC------hHHHHHHHHHHHHcC
Q 017434 113 ATS----------------------------S----VEEVSSTG--PGIRFFQLYVTKH------RNVDAQLVKRAERAG 152 (371)
Q Consensus 113 ~~~----------------------------~----~eei~~~~--~~~~~~QLy~~~d------~~~~~~~~~~a~~aG 152 (371)
... . ++++.+.. ..|.++|+..... .+...++++++.. +
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 110 1 12232221 2577888865321 2333444444433 3
Q ss_pred CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcC----
Q 017434 153 FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS---- 228 (371)
Q Consensus 153 ~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~---- 228 (371)
++++.+|+.||.... .+. ..++....+.++++|+.++
T Consensus 161 ad~ielN~scP~~~g----------------~~~-----------------------~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPG----------------LRD-----------------------LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCc----------------ccc-----------------------ccCHHHHHHHHHHHHHHHhhccc
Confidence 889999998886310 000 0133344577899998875
Q ss_pred -CCEEEEEccC------HHHHHHHHHhCCCEEEEeCCCCc-------------CCCCcc----chHHHHHHHHHHhcCCC
Q 017434 229 -LPILVKGVLT------AEDASLAIQYGAAGIIVSNHGAR-------------QLDYVP----ATVMALEEVVQAAKGRV 284 (371)
Q Consensus 229 -~pv~vK~v~~------~e~a~~a~~~Gad~I~vs~~gg~-------------~~~~~~----~~~~~l~~i~~~~~~~i 284 (371)
+||++|+... .+.++.+.++|+|+|+++|.-.. ....|+ ..++.+.++++.+++++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999642 23367789999999999874210 011222 24677888888876579
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHH
Q 017434 285 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDE 337 (371)
Q Consensus 285 ~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~e 337 (371)
||+++|||++++|+.+++.+|||+|++||++++ +|+. ++..+++|
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~----~gP~----~~~~i~~~ 326 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY----EGPG----LVKRIKRE 326 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh----hCcH----HHHHHHhc
Confidence 999999999999999999999999999999986 2554 44455544
No 54
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.79 E-value=5.5e-18 Score=156.83 Aligned_cols=200 Identities=20% Similarity=0.197 Sum_probs=149.6
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCC-CH-----H--HHhccC--CCceEEEEeecCChHHHHHHH
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV-----E--EVSSTG--PGIRFFQLYVTKHRNVDAQLV 145 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~-~~-----e--ei~~~~--~~~~~~QLy~~~d~~~~~~~~ 145 (371)
|+++|||-+.+ |+++++.++++|...+.++|-.. ++ + ...... +.|..+||.. .+++...+.+
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g-~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGG-SDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcC-CCHHHHHHHH
Confidence 68999998765 88999999999988888877321 11 1 111112 2688999985 6888889999
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHh
Q 017434 146 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 225 (371)
Q Consensus 146 ~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 225 (371)
++++++|++++.||+.||..-.|. .++ +..+. .++.+..+.++.+++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l~--~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAALL--KDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehhc--CCHHHHHHHHHHHHH
Confidence 999999999999999998631111 000 00111 245567788999999
Q ss_pred hcCCCEEEEEccCH-------HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHH
Q 017434 226 ITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDV 298 (371)
Q Consensus 226 ~~~~pv~vK~v~~~-------e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv 298 (371)
.++.|+.+|..... +.++.+.++|+|.|++++....+...++..++.+..+++.. ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 98999999986321 23567888999999996543222234566788888888765 7999999999999999
Q ss_pred HHHHHc-CCCEEEEchhHHH
Q 017434 299 FKALAL-GASGVFVGRPVPF 317 (371)
Q Consensus 299 ~kal~l-GAd~V~iGr~~l~ 317 (371)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999885
No 55
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.78 E-value=3.5e-17 Score=159.85 Aligned_cols=253 Identities=25% Similarity=0.289 Sum_probs=149.3
Q ss_pred cccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017434 71 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAER 150 (371)
Q Consensus 71 ~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 150 (371)
.+++.||+++.|+.+.+ .++.-.++++++...|+....++.. .+.++.... ....++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaL-S~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~-~~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGAL-SEEAKEALAKGANMAGTASNTGEGG-ELPEERKAA-KDLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB--TTSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhc-CHHHHHHHHHHHHHhCceEecCCCC-CCHHHhccc-CCceEEEcC-CCCCCCCHHHhc----
Confidence 45789999999998865 4567789999999999888877653 333433322 222378853 455555555553
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccc--cccccccCCCCCCCcchhhhHhhhhcccCC-C----HHHHHH
Q 017434 151 AGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLK--NYEGLYIGKMDKTDDSGLASYVANQIDRSL-N----WKDVKW 222 (371)
Q Consensus 151 aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~ 222 (371)
.++.|.|-+.--.. . ..+-.+|. |++.. .+..+. .....+++..++++ + .+.|++
T Consensus 134 -~a~~iEIKigQGAK---p---G~GG~Lp~~KV~~~ia~~R~~~----------~g~~~iSP~~h~di~s~edl~~~I~~ 196 (368)
T PF01645_consen 134 -QADMIEIKIGQGAK---P---GEGGHLPGEKVTEEIARIRGVP----------PGVDLISPPPHHDIYSIEDLAQLIEE 196 (368)
T ss_dssp -C-SEEEEE---TTS---T---TT--EE-GGG--HHHHHHHTS-----------TT--EE--SS-TT-SSHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcc---c---cCcceechhhchHHHHHHhCCC----------CCCccccCCCCCCcCCHHHHHHHHHH
Confidence 45677776642110 0 00011221 12110 000000 00112222222222 2 245889
Q ss_pred HHhhc-CCCEEEEEccC--HHHHH-HHHHhCCCEEEEeCCC-CcC-------CCCccchHHHHHHHHHHh-----cCCCc
Q 017434 223 LQTIT-SLPILVKGVLT--AEDAS-LAIQYGAAGIIVSNHG-ARQ-------LDYVPATVMALEEVVQAA-----KGRVP 285 (371)
Q Consensus 223 ir~~~-~~pv~vK~v~~--~e~a~-~a~~~Gad~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~i~ 285 (371)
+|+.. +.||.+|.+.. .++.. .+.++|+|.|++++++ |+. .+.|.|....|.++.+.+ ++++.
T Consensus 197 Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~ 276 (368)
T PF01645_consen 197 LRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVS 276 (368)
T ss_dssp HHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSE
T ss_pred HHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceE
Confidence 99988 89999999743 34443 4899999999999874 442 246778888888888775 45799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcC-----------------------------ChHHHHHHHHHHHH
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRD 336 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G~~gv~~~l~~l~~ 336 (371)
++++||++++.|++|++++|||+|.+||++|+++.|. +.+.|.+++..+.+
T Consensus 277 Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~ 356 (368)
T PF01645_consen 277 LIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAE 356 (368)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHH
T ss_pred EEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988652 34679999999999
Q ss_pred HHHHHHHHhCCC
Q 017434 337 EFELTMALSGCR 348 (371)
Q Consensus 337 el~~~m~~~G~~ 348 (371)
|++..|+.+|.+
T Consensus 357 el~~~~~a~G~~ 368 (368)
T PF01645_consen 357 ELREILAALGKR 368 (368)
T ss_dssp HHHHHHHHHT-S
T ss_pred HHHHHHHHhCCC
Confidence 999999999964
No 56
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.77 E-value=7.7e-18 Score=156.40 Aligned_cols=189 Identities=15% Similarity=0.096 Sum_probs=135.6
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCC----------------------CCHHHH----h--ccCCCc
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT----------------------SSVEEV----S--STGPGI 127 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~----------------------~~~eei----~--~~~~~~ 127 (371)
|+++|||++.+ |.+++++..+.+...+++.++. .+++.+ . +..+.|
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p 74 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVL 74 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCe
Confidence 89999999876 6789995444444445543221 122222 1 112357
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHh
Q 017434 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 128 ~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
..+|++. .|++.+.+.++.+++. ++.|.+|+.||..- +... +.+..+
T Consensus 75 ~~vqi~g-~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~~~----------------g~G~~L 121 (233)
T cd02911 75 VGVNVRS-SSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MVEA----------------GAGEAL 121 (233)
T ss_pred EEEEecC-CCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------HhcC----------------CcchHH
Confidence 8999985 7889888999998874 69999999998631 1100 112233
Q ss_pred hhhcccCCCHHHHHHHHhhcCCCEEEEEcc-----CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcC
Q 017434 208 ANQIDRSLNWKDVKWLQTITSLPILVKGVL-----TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG 282 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~-----~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 282 (371)
+ .+|+...+.++.+++ .++||++|... +.+.++.+.++|+|+|++++. . .+....++.+++++ .
T Consensus 122 l--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~-- 190 (233)
T cd02911 122 L--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T-- 190 (233)
T ss_pred c--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C--
Confidence 3 456677788999998 59999999963 245578899999999887542 1 12345677777775 3
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 283 RVPVFLDGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 283 ~i~via~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
++|||++|||.+++|+.+++..|||+||+||+
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
No 57
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.77 E-value=4.4e-17 Score=156.09 Aligned_cols=207 Identities=21% Similarity=0.253 Sum_probs=150.1
Q ss_pred eeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCCC-----------------------------
Q 017434 66 TTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATS----------------------------- 115 (371)
Q Consensus 66 ~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~~----------------------------- 115 (371)
|+|+|+++++||++|.-... .+....+.+.++|..+++. |....
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999995442 2557788888888776653 22110
Q ss_pred ------CHH----HHhc---c-CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc
Q 017434 116 ------SVE----EVSS---T-GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 181 (371)
Q Consensus 116 ------~~e----ei~~---~-~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~ 181 (371)
.++ ++.+ . ...|..+||.. .+.+.+.+.+++++++|+++|.+|+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 111 2222 1 23678899875 577888889999999999999999999863110
Q ss_pred cccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEcc--C----HHHHHHHHHhCCCEEEE
Q 017434 182 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL--T----AEDASLAIQYGAAGIIV 255 (371)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~--~----~e~a~~a~~~Gad~I~v 255 (371)
+. + ..++.+..+.++++|+.+++||++|... + .+.++.+.++|+|+|++
T Consensus 141 ---~~--------------------~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 0234455688999999889999999863 3 34578889999999999
Q ss_pred eCCC-CcC------------CC---Ccc----chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 256 SNHG-ARQ------------LD---YVP----ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 256 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
+|+- +.. .. .+. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8752 110 01 111 246678888887754799999999999999999999999999999999
Q ss_pred HH
Q 017434 316 PF 317 (371)
Q Consensus 316 l~ 317 (371)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
No 58
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.76 E-value=1.2e-16 Score=162.37 Aligned_cols=142 Identities=26% Similarity=0.341 Sum_probs=116.7
Q ss_pred CCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CC--CCccchHHHHHHHHHHhcC-CCcE
Q 017434 215 LNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QL--DYVPATVMALEEVVQAAKG-RVPV 286 (371)
Q Consensus 215 ~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~~-~i~v 286 (371)
..++.|++||+.+ +.+|+...+.|.+.++.+.++|+|+|.|.-..|. +. ..+.|.++++.+++++... .+||
T Consensus 254 ~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~v 333 (479)
T PRK07807 254 KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcE
Confidence 3567899999998 6899988999999999999999999998755442 12 2367899999999886543 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchhHHH---------------------hhh-----------------------cC
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFVGRPVPF---------------------SLA-----------------------VD 322 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~iGr~~l~---------------------~~~-----------------------~~ 322 (371)
|++|||+++.|+.|+|++||++||+|+.|.- |++ .+
T Consensus 334 ia~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~e 413 (479)
T PRK07807 334 WADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFEE 413 (479)
T ss_pred EecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCCC
Confidence 9999999999999999999999999997731 111 01
Q ss_pred ChHH-----------HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 323 GEAG-----------VRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 323 G~~g-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
|.+| +..++..|...|+..|.++|..++.||+..
T Consensus 414 Gv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~ 458 (479)
T PRK07807 414 GISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER 458 (479)
T ss_pred CccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC
Confidence 2112 778899999999999999999999999865
No 59
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.6e-17 Score=154.93 Aligned_cols=204 Identities=20% Similarity=0.202 Sum_probs=154.1
Q ss_pred ccCcce-eecccccccccCChHhHHHHHHHHHcCCcEEecCCCCC-CH---HHH----hccCC--CceEEEEeecCChHH
Q 017434 72 NISMPI-MIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATS-SV---EEV----SSTGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 72 ~~~~Pi-~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~-~~---eei----~~~~~--~~~~~QLy~~~d~~~ 140 (371)
+...|. ++|||-..+ |+++++-+++.|...+.+.|-.. ++ |.- ....+ .|.++|+-. +|++.
T Consensus 15 ~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~-ndp~~ 87 (358)
T KOG2335|consen 15 KQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGG-NDPEN 87 (358)
T ss_pred hcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcC-CCHHH
Confidence 333443 699997665 89999999999999888877311 10 111 11122 799999864 89999
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
+.+.++.++..+ ++|.+|.+||.. . -.+.+ .+.+++ .++++.-+.|
T Consensus 88 ll~Aa~lv~~y~-D~idlNcGCPq~---~-a~~g~---------------------------yGa~L~--~~~eLv~e~V 133 (358)
T KOG2335|consen 88 LLKAARLVQPYC-DGIDLNCGCPQK---V-AKRGG---------------------------YGAFLM--DNPELVGEMV 133 (358)
T ss_pred HHHHHHHhhhhc-CcccccCCCCHH---H-HhcCC---------------------------ccceec--cCHHHHHHHH
Confidence 999998888876 999999999842 0 01111 122333 3567778899
Q ss_pred HHHHhhcCCCEEEEEc------cCHHHHHHHHHhCCCEEEEeCCCCcCC--CCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017434 221 KWLQTITSLPILVKGV------LTAEDASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGV 292 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v------~~~e~a~~a~~~Gad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~via~GGI 292 (371)
+.+++.++.||.+|+. -|.+.++.+.++|++.++|+++...+. ..++..|+.+..+++.+++ +|||++|+|
T Consensus 134 ~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI 212 (358)
T KOG2335|consen 134 SAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNI 212 (358)
T ss_pred HHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCc
Confidence 9999999999999996 256779999999999999944322222 2567899999999999964 999999999
Q ss_pred CCHHHHHHHHH-cCCCEEEEchhHHH
Q 017434 293 RRGTDVFKALA-LGASGVFVGRPVPF 317 (371)
Q Consensus 293 ~~~~dv~kal~-lGAd~V~iGr~~l~ 317 (371)
.+.+|+..++. .|||+||.||..++
T Consensus 213 ~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 213 LSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred CcHHHHHHHHHHhCCceEEecchhhc
Confidence 99999999999 89999999996554
No 60
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.71 E-value=1.5e-16 Score=153.05 Aligned_cols=147 Identities=28% Similarity=0.357 Sum_probs=117.9
Q ss_pred cccCCCHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----C--CCCccchHHHHHHHHHHhcC-
Q 017434 211 IDRSLNWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----Q--LDYVPATVMALEEVVQAAKG- 282 (371)
Q Consensus 211 ~~~~~~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~~- 282 (371)
++..+..+.|+|+|+.+ .+.|+-..+.+.+.++.++++|||++.|.-..|. | ...|.|...++.++.+....
T Consensus 274 GnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~ 353 (503)
T KOG2550|consen 274 GNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF 353 (503)
T ss_pred CcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc
Confidence 45556789999999998 5778877789999999999999999999765443 2 34567777777777765532
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH--------------------Hhhh----------------------
Q 017434 283 RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP--------------------FSLA---------------------- 320 (371)
Q Consensus 283 ~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l--------------------~~~~---------------------- 320 (371)
.+|||+||||++..++.|||.+||+.||+|.-+. +++.
T Consensus 354 gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvki 433 (503)
T KOG2550|consen 354 GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKI 433 (503)
T ss_pred CCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEee
Confidence 6999999999999999999999999999998431 2221
Q ss_pred cCCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccc
Q 017434 321 VDGE-------AGVRKVLQMLRDEFELTMALSGCRSLKEITRNH 357 (371)
Q Consensus 321 ~~G~-------~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 357 (371)
++|. -.+.+++..+...++..++..|++|+++++...
T Consensus 434 AQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~ 477 (503)
T KOG2550|consen 434 AQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMM 477 (503)
T ss_pred ccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence 0121 248899999999999999999999999998754
No 61
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.71 E-value=1.2e-15 Score=149.06 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=79.8
Q ss_pred cCCCHHHHHHHHhhcC-------CCEEEEEccC------HHHHHHHHHhCCCEEEEeCCCC-c---------CCCC---c
Q 017434 213 RSLNWKDVKWLQTITS-------LPILVKGVLT------AEDASLAIQYGAAGIIVSNHGA-R---------QLDY---V 266 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~-------~pv~vK~v~~------~e~a~~a~~~Gad~I~vs~~gg-~---------~~~~---~ 266 (371)
+....+.++++++.++ +||++|+..+ .+.++.+.++|+|+|++.|.-. + ...+ |
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG 267 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSG 267 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccC
Confidence 3344566888887765 9999999743 2346778999999999998521 0 0112 2
Q ss_pred cc----hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 267 PA----TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 267 ~~----~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
++ .+..+.++.+.+++++|||+.|||.+++|+.+++.+||++|++||++++
T Consensus 268 ~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 268 KPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 22 4456677777666679999999999999999999999999999999986
No 62
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.70 E-value=3.9e-16 Score=150.12 Aligned_cols=120 Identities=24% Similarity=0.296 Sum_probs=86.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEEcc---CH---HHHHHHHHhCCCEEEEeCCCCc----------CC----C---Ccc----
Q 017434 215 LNWKDVKWLQTITSLPILVKGVL---TA---EDASLAIQYGAAGIIVSNHGAR----------QL----D---YVP---- 267 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~---~~---e~a~~a~~~Gad~I~vs~~gg~----------~~----~---~~~---- 267 (371)
...+.++++++..++||++|+.. .. +.+..+.+.|+++|++.|.-.. .. . .|+
T Consensus 149 ~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p 228 (295)
T PF01180_consen 149 LVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRP 228 (295)
T ss_dssp HHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHH
T ss_pred HHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhh
Confidence 34566888888889999999975 22 2355566889999998764111 11 1 122
Q ss_pred chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 017434 268 ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTM 342 (371)
Q Consensus 268 ~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m 342 (371)
..+..+.++++.++.++|||++|||.|++|+++++.+||++|++++.+++. |+. +++.+.+||+.+|
T Consensus 229 ~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 229 IALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 245677888888855799999999999999999999999999999999873 553 6778888888877
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.69 E-value=4.9e-15 Score=143.03 Aligned_cols=184 Identities=20% Similarity=0.218 Sum_probs=132.0
Q ss_pred eecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017434 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SSTGPGIRFFQLYVTKHRN 139 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~QLy~~~d~~ 139 (371)
+++|. ..||+.|||++.+ +..++.++.++|...+++... .+.+++ ++....|+.+++.... +
T Consensus 6 ~~lgi--~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~~-~~~~~l~~~i~~~~~~t~~pfgvn~~~~~-~- 74 (307)
T TIGR03151 6 DLLGI--EYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAGN-APPDVVRKEIRKVKELTDKPFGVNIMLLS-P- 74 (307)
T ss_pred HHhCC--CCCEEcCCCCCCC------CHHHHHHHHhCCCcceecccc-CCHHHHHHHHHHHHHhcCCCcEEeeecCC-C-
Confidence 45554 5799999998753 458999999999998887432 233332 2223356666654322 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHH
Q 017434 140 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 219 (371)
Q Consensus 140 ~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (371)
...+.++.+.+.|++.+.++.+ .| .+.
T Consensus 75 ~~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~ 101 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKY 101 (307)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHH
Confidence 1234556666677776653211 11 245
Q ss_pred HHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC--CCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 220 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
++++++. +++++. .+.+.++++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||+.|||.+++|
T Consensus 102 i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 7777765 666664 568899999999999999999875 3432 2345788999999887 799999999999999
Q ss_pred HHHHHHcCCCEEEEchhHHHhhh
Q 017434 298 VFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~~l~~~~ 320 (371)
+.+++++|||+|++|+.|+....
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~E 198 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAKE 198 (307)
T ss_pred HHHHHHcCCCEeecchHHhcccc
Confidence 99999999999999999986543
No 64
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.66 E-value=2.3e-15 Score=138.89 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=117.6
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
.+..+|+-. .+++...+.++.+++ +++.|.||+.||.. ++... +.+.
T Consensus 68 ~~vivnv~~-~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~----------------g~G~ 114 (231)
T TIGR00736 68 ALVSVNVRF-VDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEI----------------GIGQ 114 (231)
T ss_pred CCEEEEEec-CCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCC----------------CCch
Confidence 689999864 688888888888766 89999999999873 11100 1122
Q ss_pred HhhhhcccCCCHHHHHHHHhhcCCCEEEEEccC------HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHH
Q 017434 206 YVANQIDRSLNWKDVKWLQTITSLPILVKGVLT------AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA 279 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~------~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 279 (371)
.+. .+|+...+.++.+++ .++||++|+... .+.++.+.++|+|+|+|+. .+.. .+...++.++++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~--~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA--MYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee--CCCC-CchhhHHHHHHHHHh
Confidence 333 466667788999984 589999999742 2558889999999999952 2210 122678999999998
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 280 AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 280 ~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
++ ++|||++|||++.+|+.+++..|||+||+||+.+.+
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 73 499999999999999999999999999999988753
No 65
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.64 E-value=2.2e-14 Score=143.29 Aligned_cols=263 Identities=21% Similarity=0.210 Sum_probs=171.8
Q ss_pred cccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017434 71 FNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAER 150 (371)
Q Consensus 71 ~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~ 150 (371)
..+..||..+.|+++.+ .++...++|+++.+.|..+-.++.. ...+.. ......+.|+-. .-...+.+.+
T Consensus 163 ~~i~~~~~~~aMS~GAl-S~eA~~alA~a~~~~G~~sntGEGG-e~~~~~--~~~~s~I~QvaS-GRFGV~~~yL----- 232 (485)
T COG0069 163 LELKKRFVTGAMSFGAL-SKEAHEALARAMNRIGTKSNTGEGG-EDPERY--EDGRSAIKQVAS-GRFGVTPEYL----- 232 (485)
T ss_pred ceeeecccccccCCccc-cHHHHHHHHHHHHHhcCcccCCCCC-CCHHHh--ccccceEEEecc-ccCccCHHHh-----
Confidence 55678999999998876 4667889999999999877666654 333332 112456778532 3344444433
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhhhhcccC-CCHH----HHHHHH
Q 017434 151 AGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS-LNWK----DVKWLQ 224 (371)
Q Consensus 151 aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~i~~ir 224 (371)
..++++.|-+..=. +.- .+=.+|. |++.. +.... ....+ ...+++..+.+ ++.+ .|..+|
T Consensus 233 ~~a~~ieIKiaQGA---KPG---eGG~Lpg~KV~~~-IA~~R------~~~pG-~~~ISP~pHHDiysieDLaqlI~dLk 298 (485)
T COG0069 233 ANADAIEIKIAQGA---KPG---EGGQLPGEKVTPE-IAKTR------GSPPG-VGLISPPPHHDIYSIEDLAQLIKDLK 298 (485)
T ss_pred CccceEEEEeccCC---CCC---CCCCCCCccCCHH-HHHhc------CCCCC-CCCcCCCCcccccCHHHHHHHHHHHH
Confidence 23455655543211 000 0111232 22210 00000 00000 11222222222 2333 366677
Q ss_pred hhc-CCCEEEEEcc--CHHHHHH-HHHhCCCEEEEeCC-CCcC-------CCCccchHHHHHHHHHHh-----cCCCcEE
Q 017434 225 TIT-SLPILVKGVL--TAEDASL-AIQYGAAGIIVSNH-GARQ-------LDYVPATVMALEEVVQAA-----KGRVPVF 287 (371)
Q Consensus 225 ~~~-~~pv~vK~v~--~~e~a~~-a~~~Gad~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~i~vi 287 (371)
+.. ..+|.||.+. ..+++.. +.+++||.|+|+++ ||+. ...|.|....|++..+.+ ++++.|+
T Consensus 299 ~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l~ 378 (485)
T COG0069 299 EANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKLI 378 (485)
T ss_pred hcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEEE
Confidence 665 3579999974 3455444 88999999999998 4442 235666666788887765 4579999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcC-----------------------------ChHHHHHHHHHHHHHH
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVD-----------------------------GEAGVRKVLQMLRDEF 338 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~-----------------------------G~~gv~~~l~~l~~el 338 (371)
++||++|+.||+|+++||||.|.+|++.+.++.|. .++.|.+++..+.+|+
T Consensus 379 ~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~ 458 (485)
T COG0069 379 ADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEEL 458 (485)
T ss_pred ecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877641 3578999999999999
Q ss_pred HHHHHHhCCCCHhhhcccc
Q 017434 339 ELTMALSGCRSLKEITRNH 357 (371)
Q Consensus 339 ~~~m~~~G~~~l~~l~~~~ 357 (371)
+.+|+.+|.+++++|.+..
T Consensus 459 rella~lG~~~l~el~g~~ 477 (485)
T COG0069 459 RELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHhCCCCHHHHhcch
Confidence 9999999999999999653
No 66
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.63 E-value=6.9e-14 Score=136.58 Aligned_cols=200 Identities=23% Similarity=0.274 Sum_probs=116.5
Q ss_pred eecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHH-------HhccCCCceEEEEeecCChH
Q 017434 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEE-------VSSTGPGIRFFQLYVTKHRN 139 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~ee-------i~~~~~~~~~~QLy~~~d~~ 139 (371)
+++|. +.||+.+||++.+ .| .|+-+.+++|...+++.. ..+.++ +++..+.|+.+++..+....
T Consensus 6 ~~lgi--~~PIiqapM~~is--~~----~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLGI--KYPIIQAPMGGIS--TP----ELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TTTS--SH----HHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhCC--CcCEEcCCCCCCC--hH----HHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 34554 5799999998843 44 799999999999999853 334333 33344568888887654443
Q ss_pred HHH----------HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CCccccccccccccCCCCCCCcchhhhHhh
Q 017434 140 VDA----------QLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL-PPHLTLKNYEGLYIGKMDKTDDSGLASYVA 208 (371)
Q Consensus 140 ~~~----------~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (371)
... ..++...+.+.. -+..+...+.. |.-+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~------------------------~ 119 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKPDVVS------------------------F 119 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--SEEE------------------------E
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcc-------------cccccccccccceEEEE------------------------e
Confidence 332 111222222222 00000000000 00000 0
Q ss_pred hhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC--CCcCC-CCccchHHHHHHHHHHhcCCCc
Q 017434 209 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQL-DYVPATVMALEEVVQAAKGRVP 285 (371)
Q Consensus 209 ~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~i~ 285 (371)
..+.| ..+.++.+++. ++.++. .+.++++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|
T Consensus 120 ~~G~p--~~~~i~~l~~~-gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iP 192 (330)
T PF03060_consen 120 GFGLP--PPEVIERLHAA-GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIP 192 (330)
T ss_dssp ESSSC---HHHHHHHHHT-T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-
T ss_pred ecccc--hHHHHHHHHHc-CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCc
Confidence 00112 23557777664 676665 468999999999999999999864 55543 222 5778889999988 799
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
||+.|||.++.++..+|++|||+|++|+.|+...
T Consensus 193 ViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~ 226 (330)
T PF03060_consen 193 VIAAGGIADGRGIAAALALGADGVQMGTRFLATE 226 (330)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEEESHHHHTST
T ss_pred EEEecCcCCHHHHHHHHHcCCCEeecCCeEEecc
Confidence 9999999999999999999999999999998653
No 67
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.63 E-value=3.5e-14 Score=156.43 Aligned_cols=256 Identities=18% Similarity=0.130 Sum_probs=168.4
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCc
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFK 154 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~ 154 (371)
.+|.++.|+.+++ .++.-.++|+++.+.|.....++.. ...++... .....++|+-. .....+.+.+. .++
T Consensus 859 ~rf~~~aMSfGal-S~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~QiaS-GrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGAL-SPEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVAS-GRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCcc-CHHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEccC-CcCCCCHHHhc-----cCC
Confidence 4689999998876 4567889999999999887766654 44444422 22456788633 33344444443 357
Q ss_pred EEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhhhhcccCC-CHHH----HHHHHhhc-
Q 017434 155 AIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKD----VKWLQTIT- 227 (371)
Q Consensus 155 al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----i~~ir~~~- 227 (371)
.|.|-+..-.... .|-.+|. |++.. +..+ . ........+++..++++ +.++ |.++|+..
T Consensus 930 ~ieIKi~QGAKPG------~GG~Lpg~KV~~~-IA~~-----R--~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~ 995 (1485)
T PRK11750 930 VLQIKVAQGAKPG------EGGQLPGDKVNPL-IARL-----R--YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNP 995 (1485)
T ss_pred EEEEEecCCCCCC------CCCcCccccCCHH-HHHH-----c--CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCC
Confidence 7777664321000 0111332 22210 0000 0 00001112333233333 4443 66777776
Q ss_pred CCCEEEEEccC--HHH-HHHHHHhCCCEEEEeCCCC-cC-------CCCccchHHHHHHHHHHh-----cCCCcEEEecC
Q 017434 228 SLPILVKGVLT--AED-ASLAIQYGAAGIIVSNHGA-RQ-------LDYVPATVMALEEVVQAA-----KGRVPVFLDGG 291 (371)
Q Consensus 228 ~~pv~vK~v~~--~e~-a~~a~~~Gad~I~vs~~gg-~~-------~~~~~~~~~~l~~i~~~~-----~~~i~via~GG 291 (371)
+.||.||.+.. ..+ +.-+.++|+|.|++++|.| +. .+.|.|....|+++.+.+ ++++.++++||
T Consensus 996 ~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Gg 1075 (1485)
T PRK11750 996 KALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075 (1485)
T ss_pred CCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCC
Confidence 57999998743 222 3356789999999999844 31 234555555677777665 45799999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchhHHHhhhcC----------------------------ChHHHHHHHHHHHHHHHHHHH
Q 017434 292 VRRGTDVFKALALGASGVFVGRPVPFSLAVD----------------------------GEAGVRKVLQMLRDEFELTMA 343 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~iGr~~l~~~~~~----------------------------G~~gv~~~l~~l~~el~~~m~ 343 (371)
++|+.|++|+++||||.|.+||++|.+++|. .++.|.+++..+.+|++..|+
T Consensus 1076 l~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la 1155 (1485)
T PRK11750 1076 LKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMA 1155 (1485)
T ss_pred cCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988762 135799999999999999999
Q ss_pred HhCCCCHhhh
Q 017434 344 LSGCRSLKEI 353 (371)
Q Consensus 344 ~~G~~~l~~l 353 (371)
.+|.++++|+
T Consensus 1156 ~lG~~s~~el 1165 (1485)
T PRK11750 1156 QLGVRSLEDL 1165 (1485)
T ss_pred HhCCCCHHHh
Confidence 9999999999
No 68
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.57 E-value=1.7e-13 Score=128.35 Aligned_cols=121 Identities=24% Similarity=0.416 Sum_probs=95.4
Q ss_pred CCCEEEEEccCH-----HH-HHHHHHhCCCEEEEeCCCC-c----------CCC---Cccc----hHHHHHHHHHHhcCC
Q 017434 228 SLPILVKGVLTA-----ED-ASLAIQYGAAGIIVSNHGA-R----------QLD---YVPA----TVMALEEVVQAAKGR 283 (371)
Q Consensus 228 ~~pv~vK~v~~~-----e~-a~~a~~~Gad~I~vs~~gg-~----------~~~---~~~~----~~~~l~~i~~~~~~~ 283 (371)
..|+.+|...+. +| +..+.+.+.|+++++|..- + .-. +|++ +.+.++.+....+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 459999987432 22 4555688999999998421 1 001 2222 456677777777889
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
||||..|||.||.|+.+-+.+||+.|++++++.| +|+. +++.++.||...|...|+.++.|+++.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999876 3653 788999999999999999999998764
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.55 E-value=1.2e-12 Score=121.60 Aligned_cols=190 Identities=23% Similarity=0.258 Sum_probs=130.4
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHH-------HHhccCCCceEEEEeecCChHHHHHHHH
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVE-------EVSSTGPGIRFFQLYVTKHRNVDAQLVK 146 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~e-------ei~~~~~~~~~~QLy~~~d~~~~~~~~~ 146 (371)
..|+++|||.+.+ +..+++++.+.|....++... .+.+ ++.+..+.+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~~-~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAGY-LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCCC-CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 568999999998654554321 1222 2222222355678765322134567888
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhh
Q 017434 147 RAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI 226 (371)
Q Consensus 147 ~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~ 226 (371)
.+.++|++.+.++-+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8899999998763210 1123444443
Q ss_pred cCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC--CCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017434 227 TSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 304 (371)
Q Consensus 227 ~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l 304 (371)
.+++++++ +.+.++++.+.+.|+|+|.+.+. +|.........++.+.++++.. ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 36777655 46778899999999999998654 1221111134577888888776 7999999999999999999999
Q ss_pred CCCEEEEchhHHHhhhcCChHHH
Q 017434 305 GASGVFVGRPVPFSLAVDGEAGV 327 (371)
Q Consensus 305 GAd~V~iGr~~l~~~~~~G~~gv 327 (371)
|||+|++|+.++....+.+...+
T Consensus 178 GadgV~vgS~l~~~~e~~~~~~~ 200 (236)
T cd04730 178 GADGVQMGTRFLATEESGASPAY 200 (236)
T ss_pred CCcEEEEchhhhcCcccCCCHHH
Confidence 99999999999987665554433
No 70
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.45 E-value=3.5e-12 Score=124.78 Aligned_cols=227 Identities=18% Similarity=0.165 Sum_probs=140.2
Q ss_pred ceeecCcccCcceeeccccccccc----CC-hHhHHHHHHHHHcCCcEEecCCCC--------------CC---HH---H
Q 017434 65 TTTVLGFNISMPIMIAPTAFQKMA----HP-EGECATARAASAAGTIMTLSSWAT--------------SS---VE---E 119 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~~~~~----~~-~~e~~~a~aa~~~G~~~~~s~~~~--------------~~---~e---e 119 (371)
..+|.+.++++-|+.|||....-. .+ +..+..-+.-++-|+.+++++... .. ++ +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 567888999999999999532211 12 224455556566678877765311 01 11 1
Q ss_pred Hhc---cCCCceEEEEeecCC---------------------------hH-------HHHHHHHHHHHcCCcEEEEecCC
Q 017434 120 VSS---TGPGIRFFQLYVTKH---------------------------RN-------VDAQLVKRAERAGFKAIALTVDT 162 (371)
Q Consensus 120 i~~---~~~~~~~~QLy~~~d---------------------------~~-------~~~~~~~~a~~aG~~al~vtvd~ 162 (371)
+.+ ......++||+...- .+ ...+.+++++++||+.+.|+...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 211 123567888844111 11 12344567788999999998752
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEcc-----
Q 017434 163 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL----- 237 (371)
Q Consensus 163 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~----- 237 (371)
|. +-+.|-.|. .+.++ ... | +. +. ....|..++|+.||+.++.||.+|+..
T Consensus 166 ---Gy----Ll~qFlSp~-~N~Rt-----------D~y-G-Gs-le--nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 ---GY----LINEFLSPL-SNKRT-----------DEY-G-GS-PE--NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ---ch----HHHHhcCCc-cCCcC-----------CCC-C-CC-HH--HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 112221121 00000 000 0 01 11 123467799999999999999999863
Q ss_pred ---CHHH----HHHHHHhCCCEEEEeCCCCcC--CCC-ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-C
Q 017434 238 ---TAED----ASLAIQYGAAGIIVSNHGARQ--LDY-VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-A 306 (371)
Q Consensus 238 ---~~e~----a~~a~~~Gad~I~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-A 306 (371)
+.++ ++.+.++|+|+|.||...-.. .+. ....++....+++.+ ++||+++|+|++++++.++|+.| |
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 4444 567788999999997542110 111 111456677788777 79999999999999999999987 9
Q ss_pred CEEEEchhHHH
Q 017434 307 SGVFVGRPVPF 317 (371)
Q Consensus 307 d~V~iGr~~l~ 317 (371)
|+|++||+++.
T Consensus 300 D~V~~gR~~ia 310 (337)
T PRK13523 300 DLIFIGRELLR 310 (337)
T ss_pred ChHHhhHHHHh
Confidence 99999999984
No 71
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.45 E-value=3.1e-12 Score=124.74 Aligned_cols=101 Identities=30% Similarity=0.408 Sum_probs=82.8
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC--CCcCC--CCccchHHHHHHHHHHhcCC-CcEEEecC
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQL--DYVPATVMALEEVVQAAKGR-VPVFLDGG 291 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-i~via~GG 291 (371)
.+.++.+++ .+..++.+ +.++..|+++.++|+|+|++.+. ||+.. +..+++...++++++++ + +|||+.||
T Consensus 117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 456777776 56666654 46899999999999999999753 45432 33566788999999998 5 99999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchhHHHhhhc
Q 017434 292 VRRGTDVFKALALGASGVFVGRPVPFSLAV 321 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~iGr~~l~~~~~ 321 (371)
|.++.++..++++||++|++|+.|+....+
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 999999999999999999999999865443
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.40 E-value=2.4e-11 Score=117.03 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=123.5
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHH-------hcc-CCCceEEEEeecCChHHHHHHH
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SST-GPGIRFFQLYVTKHRNVDAQLV 145 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei-------~~~-~~~~~~~QLy~~~d~~~~~~~~ 145 (371)
..||+.+||++.+ + .-.++.+.+++|...+++.. ..+.+++ ++. ...|+.++|-...+.+...+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 4799999998764 2 13799999999988777643 2333332 222 2367777764333333344566
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHh
Q 017434 146 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 225 (371)
Q Consensus 146 ~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 225 (371)
+.+.+.+.+.+.++. ..|. + ++++++
T Consensus 76 ~vi~e~~v~~V~~~~--------------------------------------------------G~P~---~-~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAG--------------------------------------------------GRPD---Q-ARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcC--------------------------------------------------CChH---H-HHHHHH
Confidence 666667776654321 1121 2 456654
Q ss_pred hcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC--CCcCCCCccchHHHHHHHHHHhc--------CCCcEEEecCCCCH
Q 017434 226 ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAK--------GRVPVFLDGGVRRG 295 (371)
Q Consensus 226 ~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~i~via~GGI~~~ 295 (371)
.+++++. .+.+++.++++.++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 4777663 357899999999999999999875 5553 22344455666655541 16999999999999
Q ss_pred HHHHHHHHcCC--------CEEEEchhHHHhh
Q 017434 296 TDVFKALALGA--------SGVFVGRPVPFSL 319 (371)
Q Consensus 296 ~dv~kal~lGA--------d~V~iGr~~l~~~ 319 (371)
..+..++++|| ++|+||+.|+..-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 99999999998 8999999998743
No 73
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.38 E-value=8.5e-11 Score=116.89 Aligned_cols=221 Identities=18% Similarity=0.169 Sum_probs=133.2
Q ss_pred eecCcccCcceeecccc-cccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHH-------hcc-C-CCceEEEEeec-
Q 017434 67 TVLGFNISMPIMIAPTA-FQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEV-------SST-G-PGIRFFQLYVT- 135 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~-~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei-------~~~-~-~~~~~~QLy~~- 135 (371)
+++|. ..|++.+||+ +. . ...|+.+..++|....++... .+++++ .+. . ..|+.++|+..
T Consensus 8 ~~lgi--ryPii~gpMa~Gi--s----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~ 78 (418)
T cd04742 8 EDYGL--RYAYVAGAMARGI--A----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSP 78 (418)
T ss_pred HHhCC--CccEECCcccCCC--C----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCC
Confidence 34554 5799999998 33 3 347999999999998887543 345443 332 3 46899998763
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEe--cCCCCCcchhHHhhhhcCC-CCc-cccccccccccCCCCC-CCcchhhhHhhhh
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALT--VDTPRLGRREADIKNRFVL-PPH-LTLKNYEGLYIGKMDK-TDDSGLASYVANQ 210 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vt--vd~p~~g~r~~d~~~~~~~-p~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 210 (371)
.+++...+.++.+.+.|++.+... ++.+..-.+.++ .|+.. +.+ +...+. + +.+ ....-+..++
T Consensus 79 ~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~--~G~~~~~~g~~~~~~~--V----iakVsr~evAs~~f--- 147 (418)
T cd04742 79 DEPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYRA--KGLRRDADGRVQIANR--I----IAKVSRPEVAEAFM--- 147 (418)
T ss_pred CCchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHHh--cCCcccccccccccce--E----EEecCChhhhhhhc---
Confidence 344445667888888999876543 111111011111 11100 000 000000 0 000 0000011111
Q ss_pred cccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhC-CCEEEEeC-CCCcCCCCccchHHHHHHHHH---Hhc----
Q 017434 211 IDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVSN-HGARQLDYVPATVMALEEVVQ---AAK---- 281 (371)
Q Consensus 211 ~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~G-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~~---- 281 (371)
.+..-+.++++++. ++.|.++|+.+.+.| +|.|++.. .||+. +..++...++.+.+ .+.
T Consensus 148 --~ppp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 148 --SPAPERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYG 215 (418)
T ss_pred --CCCCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhccc
Confidence 12245778888774 233999999999999 59999973 24543 12234455555543 331
Q ss_pred --CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 282 --GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 282 --~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
.++||++.|||.|+.++..++++||++|++|+.|+...
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~ 255 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTV 255 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCc
Confidence 25999999999999999999999999999999998643
No 74
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.36 E-value=3.1e-11 Score=117.57 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.+.+++++++||+++.|+..+.. +...|-.|. .+.++ ... | +.. . ....+..+.++
T Consensus 144 ~~aA~~a~~aGfDgveih~~~gy-------L~~qFlsp~-~n~R~-----------d~y-G-gs~-e--nr~r~~~eii~ 199 (327)
T cd02803 144 AAAARRAKEAGFDGVEIHGAHGY-------LLSQFLSPY-TNKRT-----------DEY-G-GSL-E--NRARFLLEIVA 199 (327)
T ss_pred HHHHHHHHHcCCCEEEEcchhhh-------HHHHhcCcc-ccCCC-----------ccc-C-CCH-H--HHHHHHHHHHH
Confidence 34456777899999999876432 222332231 11110 000 0 011 1 12345678999
Q ss_pred HHHhhc--CCCEEEEEcc--------CHHH----HHHHHHhCCCEEEEeCCCCcCCCC--------ccchHHHHHHHHHH
Q 017434 222 WLQTIT--SLPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQLDY--------VPATVMALEEVVQA 279 (371)
Q Consensus 222 ~ir~~~--~~pv~vK~v~--------~~e~----a~~a~~~Gad~I~vs~~gg~~~~~--------~~~~~~~l~~i~~~ 279 (371)
.+|+.+ ++||.+|... +.++ ++.+.++|+|+|.+++....+... ....++.+..+++.
T Consensus 200 avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 200 AVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred HHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 999998 6899999862 3344 678889999999998653322111 12345677788887
Q ss_pred hcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchhHHH
Q 017434 280 AKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 317 (371)
Q Consensus 280 ~~~~i~via~GGI~~~~dv~kal~l-GAd~V~iGr~~l~ 317 (371)
+ ++||+++|||++.+++.++++. |||.|++||+++.
T Consensus 280 ~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 280 V--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred C--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 7 7999999999999999999998 6999999999985
No 75
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.34 E-value=1e-10 Score=103.99 Aligned_cols=185 Identities=23% Similarity=0.221 Sum_probs=122.3
Q ss_pred eeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCC-------CC---HHHHhccCCCceEEEEeecCChHHHHHHH
Q 017434 77 IMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWAT-------SS---VEEVSSTGPGIRFFQLYVTKHRNVDAQLV 145 (371)
Q Consensus 77 i~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~-------~~---~eei~~~~~~~~~~QLy~~~d~~~~~~~~ 145 (371)
|++++|.+... +....+++.+.+.|+.++.. +... .. ++.+.+..+.|.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765431 33468899999988765532 2111 11 33344444478899998754444444445
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHh
Q 017434 146 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 225 (371)
Q Consensus 146 ~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 225 (371)
++++++|++.+.++..++.. +.+..+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 78889999999887654320 1124577889998
Q ss_pred hc-CCCEEEEEccCHHHHHH-HHHhCCCEEEEeCCCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017434 226 IT-SLPILVKGVLTAEDASL-AIQYGAAGIIVSNHGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA 301 (371)
Q Consensus 226 ~~-~~pv~vK~v~~~e~a~~-a~~~Gad~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~~dv~ka 301 (371)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..++... ++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGS--KVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHH
Confidence 87 89999998643322222 688999999998764433222221 123344444433 7999999999999999999
Q ss_pred HHcCCCEEEEch
Q 017434 302 LALGASGVFVGR 313 (371)
Q Consensus 302 l~lGAd~V~iGr 313 (371)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999997
No 76
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.30 E-value=6.4e-10 Score=111.37 Aligned_cols=223 Identities=19% Similarity=0.199 Sum_probs=132.2
Q ss_pred eecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh-------ccCC-Cc-eEEEEeecC-
Q 017434 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS-------STGP-GI-RFFQLYVTK- 136 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~-------~~~~-~~-~~~QLy~~~- 136 (371)
+++|. ..|++.+||+++ .. ...|+.+..++|....++... .+++++. +..+ +| +.++|+.+.
T Consensus 13 ~~lgi--ryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag~-l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYGV--RYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAGG-LPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhCC--CCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCCC-CCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 44554 579999999832 23 347999999999998887543 4455442 2233 36 899987643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cC-CCCCcchhHHhhhhcCCC-C-ccccccccccccCCCCCCCcchhhhHhhhhc
Q 017434 137 HRNVDAQLVKRAERAGFKAIALT--VD-TPRLGRREADIKNRFVLP-P-HLTLKNYEGLYIGKMDKTDDSGLASYVANQI 211 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vt--vd-~p~~g~r~~d~~~~~~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (371)
+++...++++.+.+.|++.+... ++ +|.. .+.+. .++... . .+...+ ..+.+-.. .+......
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~ViakVsr---~~vAs~f~ 152 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAKVSR---PEVAEAFM 152 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEecCC---HHHHHHhc
Confidence 33334456677778898877653 11 1211 11111 111000 0 000000 00000000 11111111
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhC-CCEEEEeC-CCCcCCCCccchHHHHHHHH---HHh------
Q 017434 212 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVSN-HGARQLDYVPATVMALEEVV---QAA------ 280 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~G-ad~I~vs~-~gg~~~~~~~~~~~~l~~i~---~~~------ 280 (371)
.| ..-+.|+.+++. ++.|+++|+.+.+.| +|.|++.. .||+. +..++...++.+. +.+
T Consensus 153 ~p-~p~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y 221 (444)
T TIGR02814 153 SP-APAHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGY 221 (444)
T ss_pred CC-CcHHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccC
Confidence 12 234667777764 234999999999999 49998863 24543 2234556666664 333
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 281 KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 281 ~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
..++||++.|||.|+.++..++++|||+|++|+.|+....
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~E 261 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVE 261 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence 1268999999999999999999999999999999986543
No 77
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.30 E-value=2.7e-10 Score=111.94 Aligned_cols=225 Identities=17% Similarity=0.199 Sum_probs=134.1
Q ss_pred ceeecCcccCcceeecccccccccCChH-----hHHHHHHHHHcCCcEEecCCCCC--------------C---HH---H
Q 017434 65 TTTVLGFNISMPIMIAPTAFQKMAHPEG-----ECATARAASAAGTIMTLSSWATS--------------S---VE---E 119 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~~~~~~~~~-----e~~~a~aa~~~G~~~~~s~~~~~--------------~---~e---e 119 (371)
..+|.+.++++-|+.|||... .. ++| .+..-+.-++-|+.+++++.... + ++ +
T Consensus 4 P~~i~~~~lkNRiv~apm~~~-~~-~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 4 PLQLGHLTLRNRIVSTAHATN-YA-EDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CeeeCCEEecCCeEECCcccc-cc-cCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 467888999999999999532 22 222 34555555556777777543210 1 11 1
Q ss_pred Hhc---cCCCceEEEEeec----------------CC------------------hH---HHHHHHHHHHHcCCcEEEEe
Q 017434 120 VSS---TGPGIRFFQLYVT----------------KH------------------RN---VDAQLVKRAERAGFKAIALT 159 (371)
Q Consensus 120 i~~---~~~~~~~~QLy~~----------------~d------------------~~---~~~~~~~~a~~aG~~al~vt 159 (371)
+.+ ......++||... .+ .+ ...+.+++|+++||+.+.|+
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih 161 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQ 161 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 211 1235678887521 00 11 12344567788999999998
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCC--EEEEEcc
Q 017434 160 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLP--ILVKGVL 237 (371)
Q Consensus 160 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~p--v~vK~v~ 237 (371)
... |. +-+.|-.|. .+.++ ..-| +. +. ....+..++++.+|+.++.+ |.+|...
T Consensus 162 ~ah---Gy----Ll~qFlsp~-~N~Rt------------D~yG-Gs-le--nR~r~~~eiv~~ir~~vg~~~~v~iRl~~ 217 (343)
T cd04734 162 AAH---GH----LIDQFLSPL-TNRRT------------DEYG-GS-LE--NRMRFLLEVLAAVRAAVGPDFIVGIRISG 217 (343)
T ss_pred ccc---ch----HHHHhhCCC-cCCCC------------CcCC-CC-HH--HHhHHHHHHHHHHHHHcCCCCeEEEEeeh
Confidence 731 11 112221221 11110 0000 01 11 12346779999999998655 4455431
Q ss_pred --------CHHH----HHHHHHhC-CCEEEEeCCCCcCC----------CCcc-chHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 238 --------TAED----ASLAIQYG-AAGIIVSNHGARQL----------DYVP-ATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 238 --------~~e~----a~~a~~~G-ad~I~vs~~gg~~~----------~~~~-~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
+.++ ++.+.++| +|.|.||...-... +... ..++....+++.+ ++||+++|||+
T Consensus 218 ~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~ 295 (343)
T cd04734 218 DEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIR 295 (343)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCC
Confidence 2333 56778888 89999964211110 1111 1356677788877 79999999999
Q ss_pred CHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 294 RGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
+.+++.++++.| ||+|++||+++.
T Consensus 296 ~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 296 DPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred CHHHHHHHHHcCCCCeeeecHHhHh
Confidence 999999999976 999999999985
No 78
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.27 E-value=2.2e-10 Score=112.82 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=143.5
Q ss_pred cCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCH-------H-HHhccC--CCceEEEEeecCChHHHH
Q 017434 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSV-------E-EVSSTG--PGIRFFQLYVTKHRNVDA 142 (371)
Q Consensus 73 ~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~-------e-ei~~~~--~~~~~~QLy~~~d~~~~~ 142 (371)
+.--.++||+.-. |+++++|.|.++|+..+.|+|+-+.. | .+.+.. ...+.+||.. ..++.+.
T Consensus 263 ~r~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ 335 (614)
T KOG2333|consen 263 FRDKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAA 335 (614)
T ss_pred cccceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHH
Confidence 3456789997543 48899999999999999998864311 1 222222 2678999986 4455444
Q ss_pred HHHHHH-HHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 143 QLVKRA-ERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 143 ~~~~~a-~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
+.++.+ +...++-|+||++||.- + ..+ .|.+..++ ..|......++
T Consensus 336 kaaq~i~e~~~VDFIDlN~GCPID------l----------vy~---------------qG~GsALl--~rp~rl~~~l~ 382 (614)
T KOG2333|consen 336 KAAQVIAETCDVDFIDLNMGCPID------L----------VYR---------------QGGGSALL--NRPARLIRILR 382 (614)
T ss_pred HHHHHHHhhcceeeeeccCCCChh------e----------eec---------------cCCcchhh--cCcHHHHHHHH
Confidence 444443 34678999999999862 1 000 01122222 12333345555
Q ss_pred HHHhhc-CCCEEEEEccC--------HHHHHHHH-HhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 222 WLQTIT-SLPILVKGVLT--------AEDASLAI-QYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 222 ~ir~~~-~~pv~vK~v~~--------~e~a~~a~-~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
...... .+|+.||+... .+-..... +.|+++|+++++..-|.+.-.+.|+.+.++.+.+...+|+|++|.
T Consensus 383 ~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGD 462 (614)
T KOG2333|consen 383 AMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGD 462 (614)
T ss_pred HHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCc
Confidence 555555 46999998632 12244455 899999999665555677888899999999998865699999999
Q ss_pred CCCHHHHHHHHHcC--CCEEEEch-----hHHHhh
Q 017434 292 VRRGTDVFKALALG--ASGVFVGR-----PVPFSL 319 (371)
Q Consensus 292 I~~~~dv~kal~lG--Ad~V~iGr-----~~l~~~ 319 (371)
|.|.+|-.+.+..+ .+.||||| ||+|..
T Consensus 463 i~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtE 497 (614)
T KOG2333|consen 463 ILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTE 497 (614)
T ss_pred cccHHHHHHHhhcCCCcceEEeeccccccchHhhh
Confidence 99999999998866 89999999 787753
No 79
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.27 E-value=7.2e-10 Score=102.21 Aligned_cols=173 Identities=21% Similarity=0.178 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCC-----h--HHHHHHHHHHHHcCCcEEEEecCCCCCc
Q 017434 94 CATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKH-----R--NVDAQLVKRAERAGFKAIALTVDTPRLG 166 (371)
Q Consensus 94 ~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d-----~--~~~~~~~~~a~~aG~~al~vtvd~p~~g 166 (371)
..+++++.+.|+..+.. .+...++++++...-|....+| +| - ....+.++.+.++|++.+.+ |.|...
T Consensus 26 ~~~a~a~~~~G~~~~~~-~~~~~i~~i~~~~~~Pil~~~~--~d~~~~~~~~~~~~~~v~~a~~aGad~I~~--d~~~~~ 100 (221)
T PRK01130 26 AAMALAAVQGGAVGIRA-NGVEDIKAIRAVVDVPIIGIIK--RDYPDSEVYITPTLKEVDALAAAGADIIAL--DATLRP 100 (221)
T ss_pred HHHHHHHHHCCCeEEEc-CCHHHHHHHHHhCCCCEEEEEe--cCCCCCCceECCCHHHHHHHHHcCCCEEEE--eCCCCC
Confidence 58999999999865542 1222234444433345543333 11 0 01234578888999996554 433210
Q ss_pred chhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHH
Q 017434 167 RREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAI 246 (371)
Q Consensus 167 ~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~ 246 (371)
-| +.....+.++.+++..++|++ ..+.+.++++.+.
T Consensus 101 -----------~p--------------------------------~~~~~~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~ 136 (221)
T PRK01130 101 -----------RP--------------------------------DGETLAELVKRIKEYPGQLLM-ADCSTLEEGLAAQ 136 (221)
T ss_pred -----------CC--------------------------------CCCCHHHHHHHHHhCCCCeEE-EeCCCHHHHHHHH
Confidence 00 001123556777664467766 4567899999999
Q ss_pred HhCCCEEEEeCCCCcCC--CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 247 QYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 247 ~~Gad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
++|+|+|.++++|.+.. ......++.+.++++.+ ++||++.|||++++|+.+++++|||+|++|+.++.
T Consensus 137 ~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 137 KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 99999998765543221 22344577888888887 79999999999999999999999999999998763
No 80
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.26 E-value=4.2e-10 Score=110.30 Aligned_cols=104 Identities=25% Similarity=0.206 Sum_probs=80.3
Q ss_pred ccCCCHHHHHHHHhhc--CCCEEEEEc--------cCHHH----HHHHHHhCCCEEEEeCCCCc--CC-CCcc-chHHHH
Q 017434 212 DRSLNWKDVKWLQTIT--SLPILVKGV--------LTAED----ASLAIQYGAAGIIVSNHGAR--QL-DYVP-ATVMAL 273 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~--~~pv~vK~v--------~~~e~----a~~a~~~Gad~I~vs~~gg~--~~-~~~~-~~~~~l 273 (371)
.+.+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.++.++.. +. ...+ ..++.+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 3456789999999999 689999965 23444 45677889999999754322 11 1111 134667
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 274 EEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 274 ~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
.++++.+ ++||+++|||.+++++.++++.| ||+|++||+++.
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 7788877 79999999999999999999998 999999999985
No 81
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.21 E-value=1.4e-09 Score=107.21 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=75.9
Q ss_pred cCCCHHHHHHHHhhc--CCCEEEEEcc------------CHHH----HHHHHHhCCCEEEEeCCCC-cCCCCccchHHHH
Q 017434 213 RSLNWKDVKWLQTIT--SLPILVKGVL------------TAED----ASLAIQYGAAGIIVSNHGA-RQLDYVPATVMAL 273 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~--~~pv~vK~v~------------~~e~----a~~a~~~Gad~I~vs~~gg-~~~~~~~~~~~~l 273 (371)
..|..++|+.+|+.+ +.||.+|+.. ++++ ++.+.++|+|.|.++...- .+... ...+...
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~-~~~~~~~ 272 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFE-GSELNLA 272 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcC-ccchhHH
Confidence 346789999999998 4799999862 2333 4556889999999976321 11111 1234455
Q ss_pred HHHHHHhcCCCcEEEecCC------------------CCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 274 EEVVQAAKGRVPVFLDGGV------------------RRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 274 ~~i~~~~~~~i~via~GGI------------------~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
..+++.+ ++||+++|+| ++++++.++|+.| ||+|++||+++.
T Consensus 273 ~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 273 GWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 6677766 7999999999 5999999999976 999999999985
No 82
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.17 E-value=3.2e-09 Score=97.81 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=79.5
Q ss_pred CHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC--CCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 216 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
..+.++++++..++|+++ .+.+++++..+.++|+|+|.++++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 346677887765677776 4678999999999999999776554322 122345678889998877 79999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchhHHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+++|+.+++.+|||+|++|+.++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999874
No 83
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.14 E-value=6.6e-09 Score=112.27 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHhhc--CCCEEEEEcc--------CHHH----HHHHHHhCCCEEEEeCCCCc--CC-CCcc-chHHHHHH
Q 017434 214 SLNWKDVKWLQTIT--SLPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGAR--QL-DYVP-ATVMALEE 275 (371)
Q Consensus 214 ~~~~~~i~~ir~~~--~~pv~vK~v~--------~~e~----a~~a~~~Gad~I~vs~~gg~--~~-~~~~-~~~~~l~~ 275 (371)
.+..++++.+|+.+ +.||.+|+.. +.++ ++.+.++|+|.|.||..+-. +. ..++ .......+
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 45678999999988 4799999863 2333 57788999999999742111 10 0111 12334566
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 276 VVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 276 i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
+++.+ ++||+++|+|++++++.++++.| ||+|++||+++.
T Consensus 682 ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 682 IRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 77776 79999999999999999999976 999999999985
No 84
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=99.13 E-value=2.3e-09 Score=98.21 Aligned_cols=173 Identities=17% Similarity=0.169 Sum_probs=120.1
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CC-ccccccccccccCCCCCCCcchhhhH
Q 017434 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVL-PP-HLTLKNYEGLYIGKMDKTDDSGLASY 206 (371)
Q Consensus 129 ~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (371)
.+-+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+.- |. .+...++... .+.......|+...
T Consensus 15 vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~--~~~~~a~~aGA~Fi 92 (213)
T PRK06552 15 VVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDA--VTARLAILAGAQFI 92 (213)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCH--HHHHHHHHcCCCEE
Confidence 34455567888889999999999999999999999876667777766531 21 1222222110 01111111222222
Q ss_pred hhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 207 VANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 207 ~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
+ .|.++.+.+++-+ ..++|++ -|+.|+.++..+.++|+|+|.++-.+ .-....+..++..++ ++|+
T Consensus 93 v----sP~~~~~v~~~~~-~~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~p-~ip~ 158 (213)
T PRK06552 93 V----SPSFNRETAKICN-LYQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPLP-QVNV 158 (213)
T ss_pred E----CCCCCHHHHHHHH-HcCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhCC-CCEE
Confidence 2 3666766666654 4588876 68899999999999999999995311 112455666666664 6999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
++.|||. .+++.+++++||++|.+|+.++..
T Consensus 159 ~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 159 MVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 9999997 899999999999999999998643
No 85
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.12 E-value=1.8e-10 Score=109.37 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=169.2
Q ss_pred ccccCCCCCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHH--H-------hcc
Q 017434 53 PRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEE--V-------SST 123 (371)
Q Consensus 53 pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~ee--i-------~~~ 123 (371)
|..|..++++|.+++.-|++..+|+.++.-. |-....+.+-|-..|-++.+.-- ..+.+ | +..
T Consensus 92 ~k~~~~l~~ie~~vd~~G~k~~npf~~~s~P------p~t~~~lm~raf~~gwg~l~~kt--~~ld~~kV~nv~prvar~ 163 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQKPANPFHQKSKP------PPTIAELMDRAFPSGWGYLEQKT--KILDENKVRNVEPRVARS 163 (471)
T ss_pred hhhhcchhhhhhhccccCccCCCccccCCCC------CCccHHHHHhhhhcccchhheee--eecchhhheecccceeec
Confidence 5566678889999999999999999887532 22345677777777777665321 11100 0 000
Q ss_pred -------CC-CceEEEEee-------------------------------cCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017434 124 -------GP-GIRFFQLYV-------------------------------TKHRNVDAQLVKRAERAGFKAIALTVDTPR 164 (371)
Q Consensus 124 -------~~-~~~~~QLy~-------------------------------~~d~~~~~~~~~~a~~aG~~al~vtvd~p~ 164 (371)
.| ++.|.++-. -.+.....++..+.+++|.+.+.+|+.||.
T Consensus 164 ~t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscph 243 (471)
T KOG1799|consen 164 PTKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPH 243 (471)
T ss_pred cCCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCC
Confidence 01 111111100 012223456777778888888888887775
Q ss_pred CcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHH--
Q 017434 165 LGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED-- 241 (371)
Q Consensus 165 ~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~-- 241 (371)
. .+. +++. .++ .+|..+-|+..|++....+|++-|+..+.+|
T Consensus 244 g------------m~ergmgl---------------------a~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~r 288 (471)
T KOG1799|consen 244 G------------MCERGMGL---------------------ALG--QCPIVDCEVCGWINAKATIPMVSKMTPNITDKR 288 (471)
T ss_pred C------------Cccccccc---------------------eec--cChhhhHHHhhhhhhccccccccccCCCccccc
Confidence 2 121 1111 111 3455677889999999999999998765443
Q ss_pred --HHHHHHhCCCEEEEeCC------------------CCcCCCCc-------cchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 242 --ASLAIQYGAAGIIVSNH------------------GARQLDYV-------PATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 242 --a~~a~~~Gad~I~vs~~------------------gg~~~~~~-------~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
++.+...|+.+|...|. -|+.-++| |-.+..+..|++.+. ..|+.+.|||.+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt 367 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVET 367 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCccc
Confidence 66677888988876542 01111111 234455666666664 689999999999
Q ss_pred HHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 017434 295 GTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 359 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 359 (371)
+.|.+..+.+|++.|++++..+. +|.. .++.+..||+.+|.+.|+.++++++++.|.
T Consensus 368 ~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 368 GYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred ccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 99999999999999999998764 3443 457889999999999999999999998654
No 86
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.12 E-value=4.4e-09 Score=93.22 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=73.2
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
.+.++++|+.. -+++-.+.+.|++..+.++|+|.|.....|.+. .. ..|.++.+.++++. .+|||+.|+|.+
T Consensus 82 ~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~t 155 (192)
T PF04131_consen 82 EELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--S
T ss_pred HHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCCC
Confidence 46689999986 566688899999999999999999876555442 22 56788999988863 699999999999
Q ss_pred HHHHHHHHHcCCCEEEEchhHHH
Q 017434 295 GTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
++++.+++.+||++|.+|+++-.
T Consensus 156 pe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-HHHH-
T ss_pred HHHHHHHHhcCCeEEEECcccCC
Confidence 99999999999999999998753
No 87
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.09 E-value=2e-09 Score=105.45 Aligned_cols=101 Identities=18% Similarity=0.069 Sum_probs=78.8
Q ss_pred cCCCHHHHHHHHhhcCC-CEEEEEcc-----------CHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHH
Q 017434 213 RSLNWKDVKWLQTITSL-PILVKGVL-----------TAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEV 276 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~~-pv~vK~v~-----------~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i 276 (371)
..|..++++.+|+.++. ||.+|+.. +.++ ++.+.+.|+|.|.||.. ..........++...++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHH
Confidence 34678999999999854 89999852 3333 57788899999999743 22111233456778888
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 277 VQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 277 ~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
++.+ ++||+++|||+ ++++.++++.| ||+|++||+++.
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 8887 79999999997 99999999987 999999999984
No 88
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.09 E-value=5.5e-09 Score=103.06 Aligned_cols=227 Identities=16% Similarity=0.129 Sum_probs=134.3
Q ss_pred ceeecCcccCcceeeccccc--ccccCC-hHhHHHHHHHHHcCCcEEecCCCC-------C-------C---HH---HHh
Q 017434 65 TTTVLGFNISMPIMIAPTAF--QKMAHP-EGECATARAASAAGTIMTLSSWAT-------S-------S---VE---EVS 121 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~--~~~~~~-~~e~~~a~aa~~~G~~~~~s~~~~-------~-------~---~e---ei~ 121 (371)
..+|.+.++++-|+.|||.- .....| +..+..-+.-++-|+.+++++... . + ++ ++.
T Consensus 4 P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~ 83 (353)
T cd02930 4 PLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLIT 83 (353)
T ss_pred CeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHH
Confidence 46788999999999999962 111112 233455555555677777654310 0 1 11 121
Q ss_pred c---cCCCceEEEEeecC--------------------------Ch-------HHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017434 122 S---TGPGIRFFQLYVTK--------------------------HR-------NVDAQLVKRAERAGFKAIALTVDTPRL 165 (371)
Q Consensus 122 ~---~~~~~~~~QLy~~~--------------------------d~-------~~~~~~~~~a~~aG~~al~vtvd~p~~ 165 (371)
+ ......++||+... +. +...+.+++|+++||+++.|+.. .
T Consensus 84 ~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~a---h 160 (353)
T cd02930 84 DAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGS---E 160 (353)
T ss_pred HHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc---c
Confidence 1 12356788883210 01 12334456778899999998642 1
Q ss_pred cchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcC--CCEEEEEc-------
Q 017434 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS--LPILVKGV------- 236 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~--~pv~vK~v------- 236 (371)
|+ +-+.|-.|. .+.+ .... | +. +. ....+..+.++.+|+.++ .||.+|+.
T Consensus 161 Gy----Ll~qFlsp~-~N~R-----------tD~y-G-Gs-le--nR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 161 GY----LINQFLAPR-TNKR-----------TDEW-G-GS-FE--NRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred ch----HHHHhcCCc-cCCC-----------cCcc-C-CC-HH--HHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 11 122232221 0100 0000 0 11 11 124467789999999985 56666654
Q ss_pred -cCHHH----HHHHHHhCCCEEEEeC--CCCcCC----CCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017434 237 -LTAED----ASLAIQYGAAGIIVSN--HGARQL----DYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 304 (371)
Q Consensus 237 -~~~e~----a~~a~~~Gad~I~vs~--~gg~~~----~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l 304 (371)
.+.++ ++.+.++|+|+|.||. |..+.. ..... ......++++.+ ++||+++|++++.+++.++++.
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~ 297 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNRINTPEVAERLLAD 297 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHC
Confidence 24443 5677889999999974 222211 01111 234456777777 7999999999999999999998
Q ss_pred C-CCEEEEchhHHH
Q 017434 305 G-ASGVFVGRPVPF 317 (371)
Q Consensus 305 G-Ad~V~iGr~~l~ 317 (371)
| +|+|++||+++.
T Consensus 298 g~~D~V~~gR~~l~ 311 (353)
T cd02930 298 GDADMVSMARPFLA 311 (353)
T ss_pred CCCChhHhhHHHHH
Confidence 7 999999999985
No 89
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.05 E-value=1.1e-09 Score=107.96 Aligned_cols=105 Identities=20% Similarity=0.175 Sum_probs=76.6
Q ss_pred cCCCHHHHHHHHhhcC------CCEEEEEcc--------CHHH----HHHHHHhCCCEEEEeCCCCcC--CCCccchHHH
Q 017434 213 RSLNWKDVKWLQTITS------LPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGARQ--LDYVPATVMA 272 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~------~pv~vK~v~--------~~e~----a~~a~~~Gad~I~vs~~gg~~--~~~~~~~~~~ 272 (371)
..+..|+++.+|+.++ .||.+|+.. +.++ ++.+.++|+|+|.||.++.+. ..........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 4467899999999875 456666542 2333 567889999999998643221 1111223445
Q ss_pred HHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 273 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 273 l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+..+++.+..++|||++|||++++++.++++.|||+|++||+++.
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 566666654468999999999999999999999999999999985
No 90
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.05 E-value=2.9e-09 Score=104.45 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=99.8
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.+.+++++++||+.|.|+..+-. +-+.|-.|. .+.++ ... | +. +. ....|..+.|+
T Consensus 152 ~~aA~ra~~aGfDgVeih~a~gy-------Ll~qFlsp~-~N~R~-----------D~y-G-Gs-le--nR~rf~~EiI~ 207 (338)
T cd04733 152 AHAARLAQEAGFDGVQIHAAHGY-------LLSQFLSPL-TNKRT-----------DEY-G-GS-LE--NRARLLLEIYD 207 (338)
T ss_pred HHHHHHHHHcCCCEEEEchhhhh-------HHHHhcCCc-CCCCC-----------ccC-C-CC-HH--HHHHHHHHHHH
Confidence 44557788899999999876511 112232121 11110 000 0 11 11 23446789999
Q ss_pred HHHhhc--CCCEEEEEc--------cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCc---------cc--hHHHHHHH
Q 017434 222 WLQTIT--SLPILVKGV--------LTAED----ASLAIQYGAAGIIVSNHGARQLDYV---------PA--TVMALEEV 276 (371)
Q Consensus 222 ~ir~~~--~~pv~vK~v--------~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~---------~~--~~~~l~~i 276 (371)
.+|+.+ +.||.+|.. .+.++ ++.+.++|+|.|.|+.....+.... ++ .++...++
T Consensus 208 aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 287 (338)
T cd04733 208 AIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKI 287 (338)
T ss_pred HHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHH
Confidence 999998 479999985 35444 5677899999999965321111100 01 24556678
Q ss_pred HHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 277 VQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 277 ~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.
T Consensus 288 k~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 288 RKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 8877 79999999999999999999987 999999999984
No 91
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.01 E-value=5.7e-09 Score=103.96 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=77.8
Q ss_pred cCCCHHHHHHHHhhc--CCCEEEEEcc----------------------CHHH----HHHHHHhCCCEEEEeCCCCcCCC
Q 017434 213 RSLNWKDVKWLQTIT--SLPILVKGVL----------------------TAED----ASLAIQYGAAGIIVSNHGARQLD 264 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~--~~pv~vK~v~----------------------~~e~----a~~a~~~Gad~I~vs~~gg~~~~ 264 (371)
..|..++|+.+|+.+ +.||.+|+.. +.++ ++.+.++|+|+|.|+.....+..
T Consensus 201 ~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~ 280 (382)
T cd02931 201 LRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWY 280 (382)
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccc
Confidence 456789999999998 5799999752 2344 56777899999999743211111
Q ss_pred -C------ccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 265 -Y------VPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 265 -~------~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
. ... .+.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 281 WNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred cccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 0 111 134567777777 79999999999999999999987 999999999885
No 92
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.01 E-value=2.9e-08 Score=98.50 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHhhcC--CCEEEEEcc----------CHHHH----HHHHHhCCCEEEEeCCCC----cCCCC--ccchH
Q 017434 213 RSLNWKDVKWLQTITS--LPILVKGVL----------TAEDA----SLAIQYGAAGIIVSNHGA----RQLDY--VPATV 270 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~--~pv~vK~v~----------~~e~a----~~a~~~Gad~I~vs~~gg----~~~~~--~~~~~ 270 (371)
..|..++++.||+.++ .||.+|+.. +.+++ +.+.+ .+|.+.++...- ..... ....+
T Consensus 200 ~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~~ 278 (370)
T cd02929 200 ARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQE 278 (370)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccccH
Confidence 4467899999999985 566666531 23332 33443 489999874211 00000 11134
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 271 MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 271 ~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
+....+++.+ ++||+++|||++++++.++++.| ||+|++||+++.
T Consensus 279 ~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 279 PYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 5667777777 79999999999999999999987 999999999984
No 93
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.00 E-value=3.4e-08 Score=97.33 Aligned_cols=101 Identities=27% Similarity=0.297 Sum_probs=75.9
Q ss_pred CCHHHHHHHHhhcC--CCEEEEEcc---------CHHH----HHHHHHhC-CCEEEEeCCCCc---CCCCc-c-chHHHH
Q 017434 215 LNWKDVKWLQTITS--LPILVKGVL---------TAED----ASLAIQYG-AAGIIVSNHGAR---QLDYV-P-ATVMAL 273 (371)
Q Consensus 215 ~~~~~i~~ir~~~~--~pv~vK~v~---------~~e~----a~~a~~~G-ad~I~vs~~gg~---~~~~~-~-~~~~~l 273 (371)
|..|+++.+|+.++ .||.+++.. +.++ ++.+.+.| +|+|.++..+.. ..... + ......
T Consensus 201 f~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a 280 (363)
T COG1902 201 FLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFA 280 (363)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHH
Confidence 67899999999995 589999862 2233 67788999 799999864321 11111 1 122334
Q ss_pred HHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 274 EEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 274 ~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
..++..+ .+|||++|+|++++.+.+.|+.| ||.|.+||+|+.
T Consensus 281 ~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 281 ARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 5566665 69999999999999999999998 999999999985
No 94
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.99 E-value=2.2e-08 Score=91.44 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=113.7
Q ss_pred EeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhc
Q 017434 132 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 211 (371)
Q Consensus 132 Ly~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (371)
+.-..+.+...+.++.+.+.|++.+.+|.+.|..-...+.++..++-+..+...++...+ ........++...+
T Consensus 15 v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~--~~~~a~~aGA~fiv---- 88 (206)
T PRK09140 15 ILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE--QVDRLADAGGRLIV---- 88 (206)
T ss_pred EEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH--HHHHHHHcCCCEEE----
Confidence 344568888889999999999999999999887555556666665422222222221100 00000111111122
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 212 DRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
-|..+.+.++.. ...+.|++. ++.|++++..+.++|+|+|.++-. ....++.+..+++.++.++|+++.||
T Consensus 89 sp~~~~~v~~~~-~~~~~~~~~-G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvaiGG 159 (206)
T PRK09140 89 TPNTDPEVIRRA-VALGMVVMP-GVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAVGG 159 (206)
T ss_pred CCCCCHHHHHHH-HHCCCcEEc-ccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEECC
Confidence 244554555554 455777664 589999999999999999998431 12235667777776643599999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 292 VRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
| +.+++.+++++||++|.+++.++.
T Consensus 160 I-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 160 V-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred C-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 9 689999999999999999998864
No 95
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.94 E-value=1.9e-07 Score=92.39 Aligned_cols=98 Identities=15% Similarity=-0.040 Sum_probs=71.7
Q ss_pred CCHHHHHHHHhhcC-CCEEEEEc-----------cCHHH-----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHH
Q 017434 215 LNWKDVKWLQTITS-LPILVKGV-----------LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV 277 (371)
Q Consensus 215 ~~~~~i~~ir~~~~-~pv~vK~v-----------~~~e~-----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~ 277 (371)
|..|+|+.||+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.|+..... ...+-.......++
T Consensus 211 f~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~ik 288 (362)
T PRK10605 211 LVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKVR 288 (362)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHHH
Confidence 57799999999984 35777763 23344 46777889999999852110 01111233446677
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 278 QAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 278 ~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
+.+ ++||++.|++ +++.+.++|+.| ||+|++||+++.
T Consensus 289 ~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 289 ARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 776 6899999996 899999999998 999999999985
No 96
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.92 E-value=1.6e-07 Score=88.24 Aligned_cols=98 Identities=26% Similarity=0.295 Sum_probs=80.8
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCC-----------------------C-------Cc
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL-----------------------D-------YV 266 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~-----------------------~-------~~ 266 (371)
.+.+..+|+.++.|++ -.+.+.+++.++.++|+|.|.....|++.- + ..
T Consensus 101 ~~~~~~iK~~~~~l~M-AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFV-CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEE-ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4668888888877765 678999999999999999998776555421 0 12
Q ss_pred cchHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 267 PATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 267 ~~~~~~l~~i~~~~~~~i~vi--a~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+.++.|.++++.. ++||+ +.|||.+++|+.+++.+||++|++|+.++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35778899998876 69997 999999999999999999999999998874
No 97
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.92 E-value=3.6e-08 Score=90.62 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.++++++.+.|+|.+.+++..+. ...+..+.+.++++.++.++||++.|||.+++|+.+++.+|||+|.+|++++
T Consensus 129 ~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 129 HDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred CCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 4566666666667666665432221 1233456677777765446899999999999999999999999999999987
Q ss_pred H
Q 017434 317 F 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 206 ~ 206 (217)
T cd00331 206 R 206 (217)
T ss_pred C
Confidence 5
No 98
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.92 E-value=3.1e-08 Score=90.01 Aligned_cols=171 Identities=17% Similarity=0.148 Sum_probs=117.1
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHh
Q 017434 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 129 ~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
.+-+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... .+.+.....|+...+
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl~~--~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVLNP--EQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCCCEEE
Confidence 344444678888889999999999999999999988666666776655 32 1222222111 001111112222222
Q ss_pred hhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 208 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
.|.++.+.+++-+ ..++|++ -|++|+.|+..+.++|+|.|+++-.+ .-+|+ ..++.++..++ +++++
T Consensus 86 ----sP~~~~~v~~~~~-~~~i~~i-PG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~---~yikal~~plp-~i~~~ 152 (204)
T TIGR01182 86 ----SPGLTPELAKHAQ-DHGIPII-PGVATPSEIMLALELGITALKLFPAE---VSGGV---KMLKALAGPFP-QVRFC 152 (204)
T ss_pred ----CCCCCHHHHHHHH-HcCCcEE-CCCCCHHHHHHHHHCCCCEEEECCch---hcCCH---HHHHHHhccCC-CCcEE
Confidence 3556666666654 5688876 58899999999999999999996421 11223 34555555554 79999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+|||. .+++.+++++|+.+|++|+.++-
T Consensus 153 ptGGV~-~~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 153 PTGGIN-LANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred ecCCCC-HHHHHHHHhCCCEEEEEChhhcC
Confidence 999997 69999999999999999998763
No 99
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.90 E-value=5.7e-08 Score=91.86 Aligned_cols=79 Identities=22% Similarity=0.249 Sum_probs=57.6
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
+.+.++++++.++|+|.|.++|. .+....+.++...++.+.+++.+++|+.|||.+++|+.+++.+|||+|.+|+.+
T Consensus 167 vh~~~E~~~A~~~gadiIgin~r---dl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI 243 (260)
T PRK00278 167 VHDEEELERALKLGAPLIGINNR---NLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESL 243 (260)
T ss_pred eCCHHHHHHHHHcCCCEEEECCC---CcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 34566666666666666665432 122223346666777776654579999999999999999999999999999999
Q ss_pred HH
Q 017434 316 PF 317 (371)
Q Consensus 316 l~ 317 (371)
+.
T Consensus 244 ~~ 245 (260)
T PRK00278 244 MR 245 (260)
T ss_pred cC
Confidence 85
No 100
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.85 E-value=6.5e-08 Score=89.00 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=116.5
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcC--CCC-ccccccccccccCCCCCCCcchhhhH
Q 017434 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFV--LPP-HLTLKNYEGLYIGKMDKTDDSGLASY 206 (371)
Q Consensus 130 ~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~--~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (371)
+=+.-..|.+...++++.+.+.|++.+.||+++|..-...+.++..+. .|. .+...++... .+.......|+...
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~--e~a~~a~~aGA~Fi 95 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDA--ATAALYIQLGANFI 95 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCH--HHHHHHHHcCCCEE
Confidence 334446788889999999999999999999999987666666654432 232 1222222110 00001111122222
Q ss_pred hhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 207 VANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 207 ~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
+ .|.++.+.++..++ .++|++ -|++|+.|+..+.++|++.|+++-.+ ..|+ ..++.++..++ ++++
T Consensus 96 V----sP~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~p-~i~~ 161 (222)
T PRK07114 96 V----TPLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPMP-WTKI 161 (222)
T ss_pred E----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccCC-CCeE
Confidence 2 36667666666654 588876 78899999999999999999996421 1233 44555555554 6999
Q ss_pred EEecCCCC-HHHHHHHHHcCCCEEEEchhHH
Q 017434 287 FLDGGVRR-GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 287 ia~GGI~~-~~dv~kal~lGAd~V~iGr~~l 316 (371)
+.+|||.- .+++.+++.+|+.+|++|+.+.
T Consensus 162 ~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 162 MPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 99999984 4899999999999999999775
No 101
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.82 E-value=3.7e-07 Score=86.10 Aligned_cols=156 Identities=18% Similarity=0.223 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|.+.+.++++...+.|++.|.+ +.|.. -|. . +.+.++ .+....+.......
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iEl--GiPfs------------DP~--a-------DGpvIq----~a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALEL--GVPFS------------DPL--A-------DGPTIQ----AADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEE--CCCCC------------CCC--C-------cCHHHH----HHHHHHHHcCCCHH
Confidence 447778889999999999999986 44432 121 0 000000 01111122111223
Q ss_pred CCHHHHHHHHhh-cCCCEEEEEccCH-------HHHHHHHHhCCCEEEEeC---------------CCCc---------C
Q 017434 215 LNWKDVKWLQTI-TSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGAR---------Q 262 (371)
Q Consensus 215 ~~~~~i~~ir~~-~~~pv~vK~v~~~-------e~a~~a~~~Gad~I~vs~---------------~gg~---------~ 262 (371)
..++.++++|+. .++|++.=+..++ +.++.+.++|+|+|.+.. +|-. .
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 356789999876 6889875554554 347889999999998841 1100 0
Q ss_pred -------------------CC--Cc------cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 263 -------------------LD--YV------PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 263 -------------------~~--~~------~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
.. +| +...+.+.++++.. +.||++.|||++++++.++...|||+|.+|+.+
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 11 12345566666654 679999999999999999999999999999998
Q ss_pred HHhh
Q 017434 316 PFSL 319 (371)
Q Consensus 316 l~~~ 319 (371)
+.-+
T Consensus 231 v~~~ 234 (256)
T TIGR00262 231 VKII 234 (256)
T ss_pred HHHH
Confidence 7654
No 102
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.81 E-value=6.7e-08 Score=89.09 Aligned_cols=93 Identities=23% Similarity=0.186 Sum_probs=72.2
Q ss_pred HHHHHHHHhhcCCCEEEEEc-----cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 217 WKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v-----~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
.++++.+++.. .|+.+|.+ ++.++ ++.+.++|+|+|..|+.- ..+..+.+.+..+++..+++++|.
T Consensus 109 ~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~IK 183 (221)
T PRK00507 109 EADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGVK 183 (221)
T ss_pred HHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceEE
Confidence 45677777765 47889985 34444 466889999999887542 123467788888888887789999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
++|||++.+|+.+.+.+||+.++..+.
T Consensus 184 asGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 184 ASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred eeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 999999999999999999999877653
No 103
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.79 E-value=2.7e-07 Score=85.58 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=53.3
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
++.+.+.|++.+.+.+....+...+ +.++.+.++++.+ ++||++.|||++.+|+.+++..||++|++||.++.+
T Consensus 152 ~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 152 AKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 3444455555555432111111122 5678888888776 799999999999999999999999999999999864
No 104
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.79 E-value=2.1e-07 Score=84.34 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=113.6
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhh
Q 017434 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVA 208 (371)
Q Consensus 130 ~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (371)
+-+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... .+.......|+...+
T Consensus 7 v~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~~--e~a~~ai~aGA~Fiv- 81 (201)
T PRK06015 7 IPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILNA--KQFEDAAKAGSRFIV- 81 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcCH--HHHHHHHHcCCCEEE-
Confidence 33444578888889999999999999999999998655556666555 32 1222222111 011111112222222
Q ss_pred hhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 209 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 209 ~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
.|.++.+.+++-+ ..++|++ -|++|+.|+..+.++|++.|+++-.+ .-+|+ ..++.++..++ ++|++.
T Consensus 82 ---SP~~~~~vi~~a~-~~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~---~yikal~~plp-~~~l~p 149 (201)
T PRK06015 82 ---SPGTTQELLAAAN-DSDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGA---AFLKALSSPLA-GTFFCP 149 (201)
T ss_pred ---CCCCCHHHHHHHH-HcCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCH---HHHHHHHhhCC-CCcEEe
Confidence 3666766666655 4688876 78899999999999999999996421 11123 44555556664 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+|||. .+++.+++++|+..++.|+.+.
T Consensus 150 tGGV~-~~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 150 TGGIS-LKNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred cCCCC-HHHHHHHHhCCCeEEEEchhhC
Confidence 99997 6899999999988777766554
No 105
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.76 E-value=1.1e-07 Score=85.76 Aligned_cols=168 Identities=19% Similarity=0.198 Sum_probs=105.7
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhh
Q 017434 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVA 208 (371)
Q Consensus 130 ~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (371)
+-++-..+.+...++++.+.+.|++.+.++...+..-.-.+.++..+ |. .+...++... .........+....+.
T Consensus 7 ~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~~--~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 7 VAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLTP--EQADAAIAAGAQFIVS 82 (190)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCCCEEEc
Confidence 34445567888888888888999999999988765322234444443 21 1111111100 0000000000111111
Q ss_pred hhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 209 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 209 ~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
+..+.+ +...++..+.|+++ ++.|++++..+.++|+|+|.++.. .+...+.+..+++.++ ++|+++
T Consensus 83 ----p~~~~~-~~~~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~~-~~p~~a 148 (190)
T cd00452 83 ----PGLDPE-VVKAANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPFP-QVRFMP 148 (190)
T ss_pred ----CCCCHH-HHHHHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhCC-CCeEEE
Confidence 223334 44444556788775 677999999999999999998531 1123456666665553 599999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.||| +.+++.+++.+||++|.+++.+.
T Consensus 149 ~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 149 TGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred eCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 9999 89999999999999999999876
No 106
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.76 E-value=1.7e-06 Score=81.12 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=95.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..+.+.+.++++..++. ++++.+++-||.+-. .+.... ......+. ..
T Consensus 14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~a------------dG~~i~---------------~~~~~a~~----~g 61 (244)
T PRK13125 14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKY------------DGPVIR---------------KSHRKVKG----LD 61 (244)
T ss_pred CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCC------------CCHHHH---------------HHHHHHHH----cC
Confidence 44777788889888887 999999875543200 000000 00001111 11
Q ss_pred CCHHHHHHHHhhcCCCEE--EEE---ccCHHH-HHHHHHhCCCEEEEeC-------C-----------CCc---------
Q 017434 215 LNWKDVKWLQTITSLPIL--VKG---VLTAED-ASLAIQYGAAGIIVSN-------H-----------GAR--------- 261 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~--vK~---v~~~e~-a~~a~~~Gad~I~vs~-------~-----------gg~--------- 261 (371)
. ++.++++|+.+++|+. +|. +.+++. ++.+.++|+|+|.+.. + |-.
T Consensus 62 ~-~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 62 I-WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred c-HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 1 6789999988889975 332 234554 7888899999999851 1 100
Q ss_pred C----------CC----------Cc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 262 Q----------LD----------YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 262 ~----------~~----------~~----~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
. .+ .| ....+.+.++++... +.||+++|||++.+++.+++..|||+|.+|+.++.
T Consensus 141 ~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 141 PDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred CHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0 00 01 111234555555542 47899999999999999999999999999999875
Q ss_pred hh
Q 017434 318 SL 319 (371)
Q Consensus 318 ~~ 319 (371)
-+
T Consensus 220 ~~ 221 (244)
T PRK13125 220 EL 221 (244)
T ss_pred HH
Confidence 43
No 107
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.76 E-value=1.9e-07 Score=91.72 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCHHHHHHHHhhc--CCCEEEEEcc--------CHHH----HHHHHHhCCCEEEEeCCCCc------C-CCCc-c--chH
Q 017434 215 LNWKDVKWLQTIT--SLPILVKGVL--------TAED----ASLAIQYGAAGIIVSNHGAR------Q-LDYV-P--ATV 270 (371)
Q Consensus 215 ~~~~~i~~ir~~~--~~pv~vK~v~--------~~e~----a~~a~~~Gad~I~vs~~gg~------~-~~~~-~--~~~ 270 (371)
|..|+|+.||+.+ +.||.+|+.. +.++ ++.+.++|+|.+.++..... . .... . ..+
T Consensus 201 f~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (341)
T PF00724_consen 201 FLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNL 280 (341)
T ss_dssp HHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhh
Confidence 5679999999998 5789999862 1233 57788899999877532111 0 0111 1 123
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 271 MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 271 ~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
.....+++.+ ++|||++|||++++.+.++++.| ||+|.+||+++.
T Consensus 281 ~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 281 DLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 5566777777 79999999999999999999988 999999999985
No 108
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.73 E-value=3e-07 Score=85.21 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=75.4
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC---------------CC-Cc-----------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HG-AR----------------- 261 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~---------------~g-g~----------------- 261 (371)
..+.++.+++.+++|+.+++ +.+.++++.+.++|+|.|++.. .| .+
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~ 139 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGW 139 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCC
Confidence 45677788777788888875 4677888888888888887742 01 00
Q ss_pred -C---C--------------C------------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEE
Q 017434 262 -Q---L--------------D------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 262 -~---~--------------~------------~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~i 311 (371)
. . + ...+.++.+.++++.+ ++||++.|||++.+|+.+++.+|||+|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 140 LEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred cccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 0 0 0 0123466777777765 79999999999999999999999999999
Q ss_pred chhHHHh
Q 017434 312 GRPVPFS 318 (371)
Q Consensus 312 Gr~~l~~ 318 (371)
||.++.+
T Consensus 218 g~a~~~~ 224 (230)
T TIGR00007 218 GKALYEG 224 (230)
T ss_pred eHHHHcC
Confidence 9999864
No 109
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=1.7e-06 Score=77.26 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG 305 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG 305 (371)
..-+.+-.+.+.|++..|.++|+|.|-..-+|.+. .....+.++.++++.+ . .++||+.|.+.|++++.+++..|
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~--~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-A--GCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-C--CCeEEeeCCCCCHHHHHHHHHhC
Confidence 45567777899999999999999998654444332 2223567888888877 3 79999999999999999999999
Q ss_pred CCEEEEchhHH
Q 017434 306 ASGVFVGRPVP 316 (371)
Q Consensus 306 Ad~V~iGr~~l 316 (371)
|++|.+|+++-
T Consensus 203 a~aVvVGsAIT 213 (229)
T COG3010 203 ADAVVVGSAIT 213 (229)
T ss_pred CeEEEECcccC
Confidence 99999999774
No 110
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.71 E-value=1.5e-06 Score=82.14 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=98.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|.+.+.++++...+.|++.|.+ +.|.. -|. . +.+.++ .+....+.......
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iEl--GiPfS------------DP~--a-------DGpvIq----~a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIEL--GIPYS------------DPL--A-------DGPIIQ----EASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE--CCCCC------------CCC--c-------cCHHHH----HHHHHHHHcCCCHH
Confidence 447788899999999999999986 44432 121 0 000000 01111222112223
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccC------H-HHHHHHHHhCCCEEEEeC---------------CCC---------cC-
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLT------A-EDASLAIQYGAAGIIVSN---------------HGA---------RQ- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~------~-e~a~~a~~~Gad~I~vs~---------------~gg---------~~- 262 (371)
..++.++++|+..+.|+++=.-.+ . ...+.+.++|+|++.+.. +|= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 457889999987789977544222 2 247889999999999842 110 00
Q ss_pred ------------------C--CCcc-----c-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 263 ------------------L--DYVP-----A-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 263 ------------------~--~~~~-----~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
. -+|. . ..+.+..+++.. +.||...+||++++++.+....|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 0111 1 123345555543 7999999999999999999999999999999998
Q ss_pred Hhh
Q 017434 317 FSL 319 (371)
Q Consensus 317 ~~~ 319 (371)
.-+
T Consensus 236 ~~i 238 (263)
T CHL00200 236 QIL 238 (263)
T ss_pred HHH
Confidence 654
No 111
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.70 E-value=5e-08 Score=88.07 Aligned_cols=168 Identities=17% Similarity=0.203 Sum_probs=106.3
Q ss_pred EeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHhhhh
Q 017434 132 LYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYVANQ 210 (371)
Q Consensus 132 Ly~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (371)
+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++...+ ........|+...+
T Consensus 13 Vir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~~e--~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLTAE--QAEAAIAAGAQFIV--- 85 (196)
T ss_dssp EETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--SHH--HHHHHHHHT-SEEE---
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccCHH--HHHHHHHcCCCEEE---
Confidence 334567888889999999999999999999987555555566555 43 12222221110 00001111222222
Q ss_pred cccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017434 211 IDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 211 ~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G 290 (371)
.|.++.+.+++-++ .++|++ -|++|+.|+..+.++|++.|+++-.+- -+|+ ..++.++..++ +++++.+|
T Consensus 86 -SP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~---~~ik~l~~p~p-~~~~~ptG 155 (196)
T PF01081_consen 86 -SPGFDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGP---SYIKALRGPFP-DLPFMPTG 155 (196)
T ss_dssp -ESS--HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHH---HHHHHHHTTTT-T-EEEEBS
T ss_pred -CCCCCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcH---HHHHHHhccCC-CCeEEEcC
Confidence 36667666666654 578876 788999999999999999999964211 1223 45555555554 79999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 291 GVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 291 GI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
||. .+++.+++.+|+.+|++|+.+.-
T Consensus 156 GV~-~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 156 GVN-PDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp S---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred CCC-HHHHHHHHhCCCEEEEECchhcC
Confidence 998 58999999999999999997764
No 112
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.67 E-value=3e-07 Score=83.58 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=106.1
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh---------cCCCCccccccccccccCCCCCCCcchhh
Q 017434 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---------FVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (371)
Q Consensus 134 ~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~---------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (371)
+...++.+.++++.|++.|+.+++|+ |.+..-.++.-.+ .+||.+.........+. ......|+.
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~---P~~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea---~~ai~~GAd 92 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN---PSYVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEA---REAIENGAD 92 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC---cchHHHHHHHhccCCCeEEEEecCCCCCCChHHHHHHHH---HHHHHcCCC
Confidence 34566778888888888999888885 3332222222211 12343322211110000 000011111
Q ss_pred hH--hh-----hhcccCCCHHHHHHHHhhcCCCEEEEEc-----cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccc
Q 017434 205 SY--VA-----NQIDRSLNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPA 268 (371)
Q Consensus 205 ~~--~~-----~~~~~~~~~~~i~~ir~~~~~pv~vK~v-----~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~ 268 (371)
+. +. ..++.+...++|+.+++.++.++.+|.+ ++.++ .+.+.++|+|.|..|.... .+..
T Consensus 93 EiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gA 168 (228)
T COG0274 93 EIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGA 168 (228)
T ss_pred eeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCC
Confidence 10 00 1133445567899999998766788976 34443 4668899999999986422 4456
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 269 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 269 ~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+.+.+.-+++.+++++.|-++|||||.+|+.+++.+||.-++..+
T Consensus 169 T~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 169 TVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 777777777887778999999999999999999999987765554
No 113
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.64 E-value=4.6e-07 Score=82.31 Aligned_cols=117 Identities=24% Similarity=0.354 Sum_probs=89.5
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC-------------------------------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN------------------------------------- 257 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~------------------------------------- 257 (371)
..+.++++.+++.+|+.|.+ +.+.+|+++++.+|||-|.+..
T Consensus 62 ~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~ 141 (256)
T COG0107 62 MLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGW 141 (256)
T ss_pred HHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCc
Confidence 46778899899999999986 6899999999999999998821
Q ss_pred -----CCCcC---C------------------------CCc--cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017434 258 -----HGARQ---L------------------------DYV--PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 303 (371)
Q Consensus 258 -----~gg~~---~------------------------~~~--~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~ 303 (371)
|||+. + |+. .-.++.+..+++.+ ++|||++||..+.+|+.+++.
T Consensus 142 ~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf~ 219 (256)
T COG0107 142 YEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAFT 219 (256)
T ss_pred EEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHHH
Confidence 23321 0 111 12566778888887 899999999999999999999
Q ss_pred cC-CCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCC
Q 017434 304 LG-ASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGC 347 (371)
Q Consensus 304 lG-Ad~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 347 (371)
.| ||++..++-|.|+ + .-..|++.+|...|.
T Consensus 220 ~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 220 EGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred hcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 88 9999999988874 2 224566666666664
No 114
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.63 E-value=4.4e-07 Score=85.34 Aligned_cols=98 Identities=27% Similarity=0.261 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCC---------------------C----------C
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQL---------------------D----------Y 265 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~---------------------~----------~ 265 (371)
.+.+..+|+.++.|++ -++.+.+++.++.+.|+|.|.....||+.- . .
T Consensus 103 de~~~~~K~~f~vpfm-ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFV-CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 4667888888888876 567899999999999999998876655421 0 0
Q ss_pred ccchHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 266 VPATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 266 ~~~~~~~l~~i~~~~~~~i~vi--a~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
-.++++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.+..
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 135678888888765 79998 999999999999999999999999998874
No 115
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.63 E-value=2e-06 Score=78.07 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=76.1
Q ss_pred HHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC-CC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 220 VKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ-LD-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 220 i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
++.+|+.. +..|.+ .+.+.+++..+.+.|+|+|.++.-..+. .. ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34455544 233443 4567889999999999999775322221 11 1233567788887766 7999999999 899
Q ss_pred HHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 017434 297 DVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFEL 340 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~ 340 (371)
++.+++.+||++|++|+.+... +........+++.++.
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~~------~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFSS------ANPYSKAKRYAESIKK 199 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhcC------CCHHHHHHHHHHHHhh
Confidence 9999999999999999998752 1233444555555543
No 116
>PLN02591 tryptophan synthase
Probab=98.60 E-value=4.4e-06 Score=78.42 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=97.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|.+.+.++++...+.|++.|.+ +.|.. -|. . +...++ .+....+.......
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iEl--GiPfS------------DP~--a-------DGpvIq----~a~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIEL--GVPYS------------DPL--A-------DGPVIQ----AAATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE--CCCCC------------CCc--c-------cCHHHH----HHHHHHHHcCCCHH
Confidence 457788899999999999999986 44432 121 0 000000 01111222112223
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccCH-------HHHHHHHHhCCCEEEEeC---------------CCC---------cC-
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLTA-------EDASLAIQYGAAGIIVSN---------------HGA---------RQ- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~~-------e~a~~a~~~Gad~I~vs~---------------~gg---------~~- 262 (371)
..++.++++|+..++|+++=.-.++ +..+.+.++|+|++.+-. ||= +.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 3577888888777889775442221 236788899999988821 000 00
Q ss_pred ---------------------CCC---c-cchH-HHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 263 ---------------------LDY---V-PATV-MALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 263 ---------------------~~~---~-~~~~-~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
..+ . +..+ +.+..+++.. ++||+.--||++++|+.+++..|||+|.+|+.++
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT--DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC--CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 001 1 1222 3366666643 7999998899999999999999999999999998
Q ss_pred Hhh
Q 017434 317 FSL 319 (371)
Q Consensus 317 ~~~ 319 (371)
.-.
T Consensus 223 k~i 225 (250)
T PLN02591 223 KAL 225 (250)
T ss_pred Hhh
Confidence 654
No 117
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.56 E-value=2.9e-07 Score=86.14 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH---cCCCEEEEchhH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA---LGASGVFVGRPV 315 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~---lGAd~V~iGr~~ 315 (371)
.+.++.+.+.|++.|++++...-+...|+ .++.+.++++.+ ++|||++|||++.+|+.+++. .||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35578899999999999754332333454 899999999887 799999999999999999875 499999999999
Q ss_pred HHh
Q 017434 316 PFS 318 (371)
Q Consensus 316 l~~ 318 (371)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 874
No 118
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.56 E-value=5.1e-06 Score=77.79 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=95.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..+.+.+.+.++..+++|++.+.+.+ |.. -|. ..-..+. +.....+.......
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv-~DG~~I~------------~a~~~al~~g~~~~ 62 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGI--PFS------------DPV-ADGPVIQ------------AASERALANGVTLK 62 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCC-CCCHHHH------------HHHHHHHHcCCCHH
Confidence 34667888999999999999997754 542 110 0000000 00011111111223
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccC-------HHHHHHHHHhCCCEEEEeC---------------CCC---------cC-
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLT-------AEDASLAIQYGAAGIIVSN---------------HGA---------RQ- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~-------~e~a~~a~~~Gad~I~vs~---------------~gg---------~~- 262 (371)
...+.++++|+..++|+.+=.-.+ .+-++.+.++|+|++++.. +|- +.
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~ 142 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPD 142 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 456788899887788866522223 2347778889999888821 110 00
Q ss_pred ----------C-----------CCc-----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 263 ----------L-----------DYV-----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 263 ----------~-----------~~~-----~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
. .++ +...+.+.++++.. ++||+++|||++.+++.++... ||+|.+|+.++
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 0 011 12335566666643 7999999999999999999999 99999999887
Q ss_pred Hhh
Q 017434 317 FSL 319 (371)
Q Consensus 317 ~~~ 319 (371)
.-+
T Consensus 220 ~~~ 222 (242)
T cd04724 220 KII 222 (242)
T ss_pred HHH
Confidence 654
No 119
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.56 E-value=1.1e-06 Score=79.08 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=100.2
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc-cccccccccccCCCCCCCcchhhhHhh
Q 017434 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH-LTLKNYEGLYIGKMDKTDDSGLASYVA 208 (371)
Q Consensus 130 ~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (371)
+-+.-..+.+...+.++.+-+.|++.+.++...+.........+..+ |.- .....+...+ ........++...+
T Consensus 15 ~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gtvl~~d--~~~~A~~~gAdgv~- 89 (187)
T PRK07455 15 IAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGTILTLE--DLEEAIAAGAQFCF- 89 (187)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEEEEcHH--HHHHHHHcCCCEEE-
Confidence 34444566666677777777777777777766654322223232221 110 0000000000 00000000011111
Q ss_pred hhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 209 NQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 209 ~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
-|.+..+ +..+++..+.+.++. +.|++++..+.+.|+|+|.++-. ......+.+..++..++ ++|+++
T Consensus 90 ---~p~~~~~-~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~~-~ipvva 157 (187)
T PRK07455 90 ---TPHVDPE-LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPLG-HIPLIP 157 (187)
T ss_pred ---CCCCCHH-HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhCC-CCcEEE
Confidence 2344434 344555667777655 89999999999999999999421 01223566777777663 599999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.||| +.+++..+++.||++|.+++.++
T Consensus 158 iGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 158 TGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred eCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 9999 58999999999999999999765
No 120
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.55 E-value=3.4e-07 Score=85.56 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l-GAd~V~iGr~~l~ 317 (371)
.+.++.+.+.|+|.|.+++..... ......++.+.++++.. ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g-~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDG-TKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCC-CCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 355788999999999996532110 11223678888888776 7999999999999999999997 9999999999986
Q ss_pred h
Q 017434 318 S 318 (371)
Q Consensus 318 ~ 318 (371)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 4
No 121
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=6.4e-07 Score=80.98 Aligned_cols=165 Identities=20% Similarity=0.166 Sum_probs=111.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..+.+....+++...+.|+++|.||+.+|....-.+.+++.+. ---+...++.+ ..+.......|+...+ .|.
T Consensus 21 ~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~--~~q~~~a~~aGa~fiV----sP~ 93 (211)
T COG0800 21 GDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLN--PEQARQAIAAGAQFIV----SPG 93 (211)
T ss_pred eCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccC--HHHHHHHHHcCCCEEE----CCC
Confidence 4688888889999999999999999999999888888877663 11122222211 0000011111222222 366
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
++-+.++.- ...++|++ -|+.|+-++..++++|++.++++-... .+++. .++.+..-+ .+++++..|||.
T Consensus 94 ~~~ev~~~a-~~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~~---~~ka~~gP~-~~v~~~pTGGVs- 163 (211)
T COG0800 94 LNPEVAKAA-NRYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGPA---MLKALAGPF-PQVRFCPTGGVS- 163 (211)
T ss_pred CCHHHHHHH-HhCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcHH---HHHHHcCCC-CCCeEeecCCCC-
Confidence 775555544 44588876 788999999999999999999964311 12232 333232222 369999999997
Q ss_pred HHHHHHHHHcCCCEEEEchhHH
Q 017434 295 GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l 316 (371)
..++.+++++|+.+|++|+-+.
T Consensus 164 ~~N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 164 LDNAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred HHHHHHHHhCCceEEecCcccc
Confidence 6799999999999999888655
No 122
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.53 E-value=8.7e-07 Score=83.57 Aligned_cols=99 Identities=26% Similarity=0.293 Sum_probs=79.9
Q ss_pred CHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC------------------C--------C----C
Q 017434 216 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ------------------L--------D----Y 265 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~------------------~--------~----~ 265 (371)
..+.+..+|+.++.|++ -++.+.+++.++.+.|+|.|...+..|+. + . .
T Consensus 109 ad~~~~~~K~~f~~~fm-ad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~ 187 (293)
T PRK04180 109 ADEEYHIDKWDFTVPFV-CGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKE 187 (293)
T ss_pred hHHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccc
Confidence 34668888888888876 56789999999999999999876433320 0 0 1
Q ss_pred ccchHHHHHHHHHHhcCCCcEE--EecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 266 VPATVMALEEVVQAAKGRVPVF--LDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 266 ~~~~~~~l~~i~~~~~~~i~vi--a~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
-.+.++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|++|+.++.
T Consensus 188 ~~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 188 LQAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 235678888888876 79998 999999999999999999999999998874
No 123
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.51 E-value=1e-06 Score=81.68 Aligned_cols=77 Identities=27% Similarity=0.288 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++..| |++|++||++++
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 3557888889999888864221112234 5789999998877 69999999999999999999998 999999999987
Q ss_pred h
Q 017434 318 S 318 (371)
Q Consensus 318 ~ 318 (371)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 5
No 124
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.50 E-value=3e-06 Score=77.69 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=110.2
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCCCCCCCcchhhhHh
Q 017434 129 FFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPP-HLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 129 ~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
.+-+.-..+.+...++++.+.+.|++.+.||+++|..-.-.+.++..| |. .+...++.. ..+.......|+...+
T Consensus 17 ~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~--~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 17 VVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLN--PEQLAQAIEAGAQFIV 92 (212)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccC--HHHHHHHHHcCCCEEE
Confidence 444555678888899999999999999999999986544456776665 42 122222110 0000011111222222
Q ss_pred hhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 208 ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
.|.++.+.++.-++ .++|++ -++.|+.++..+.++|++.|+++-.+ .. +| ...++.++..++ +++++
T Consensus 93 ----sP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-gg---~~~lk~l~~p~p-~~~~~ 159 (212)
T PRK05718 93 ----SPGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-GG---VKMLKALAGPFP-DVRFC 159 (212)
T ss_pred ----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-cC---HHHHHHHhccCC-CCeEE
Confidence 25566666666554 678875 67899999999999999999995321 01 12 345555556564 69999
Q ss_pred EecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 288 LDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+|||. .+++.+++.+|+..++. +.+++
T Consensus 160 ptGGV~-~~ni~~~l~ag~v~~vg-gs~L~ 187 (212)
T PRK05718 160 PTGGIS-PANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred EeCCCC-HHHHHHHHhCCCEEEEE-ChHhC
Confidence 999997 69999999999544444 55554
No 125
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.49 E-value=2.1e-06 Score=78.61 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCHHHHHHHHhhcCCCEEEEEc-----cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCc
Q 017434 215 LNWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 285 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v-----~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 285 (371)
...++++++++.++ .+.+|.+ ++.++ ++.+.++|+|.|..|+.-+ .+..+.+.+..+++.++++++
T Consensus 103 ~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~ 177 (211)
T TIGR00126 103 VVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIG 177 (211)
T ss_pred HHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCe
Confidence 35677888888774 3344554 34333 5678999999999985311 233566666666677766899
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
|.++|||++.+|+++.+++||+.++..+
T Consensus 178 IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 178 VKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 9999999999999999999999876543
No 126
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.5e-06 Score=83.52 Aligned_cols=205 Identities=20% Similarity=0.207 Sum_probs=136.0
Q ss_pred ccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCC--CCHHHHh---------------------ccCC---
Q 017434 72 NISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT--SSVEEVS---------------------STGP--- 125 (371)
Q Consensus 72 ~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~--~~~eei~---------------------~~~~--- 125 (371)
.+.+=+++|||-= -|+++++--|-+.|..++.+..-. ..++-+. ...|
T Consensus 8 ~y~nk~iLApMvr------~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~ 81 (477)
T KOG2334|consen 8 FYRNKLILAPMVR------AGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAEN 81 (477)
T ss_pred hhcCcEeeehHHH------hccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhc
Confidence 3467789999832 258899999999999988764311 1111110 0011
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
....||+- ..+.+...+..+.+. .....+++|++||-. |+.-.++ +.
T Consensus 82 ~rlilQ~g-T~sa~lA~e~A~lv~-nDvsgidiN~gCpK~----------fSi~~gm---------------------ga 128 (477)
T KOG2334|consen 82 SRLILQIG-TASAELALEAAKLVD-NDVSGIDINMGCPKE----------FSIHGGM---------------------GA 128 (477)
T ss_pred CeEEEEec-CCcHHHHHHHHHHhh-cccccccccCCCCCc----------cccccCC---------------------Cc
Confidence 45677873 355555444443333 356778889998852 2111111 11
Q ss_pred HhhhhcccCCCHHHHHHHHhhcCCCEEEEEcc------CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHH
Q 017434 206 YVANQIDRSLNWKDVKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA 279 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~------~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 279 (371)
.+. .+++....++..+.+...+|+..|+.. +.+..++....|+.+|.|+.+..-....-+++.+.+.++...
T Consensus 129 alL--t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~ 206 (477)
T KOG2334|consen 129 ALL--TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQA 206 (477)
T ss_pred hhh--cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 111 356656678999999999999999862 345578889999999999543110112346678889999888
Q ss_pred hcCCCcEEEecCCCC---HHHHHHHHH-cCCCEEEEchhHHHh
Q 017434 280 AKGRVPVFLDGGVRR---GTDVFKALA-LGASGVFVGRPVPFS 318 (371)
Q Consensus 280 ~~~~i~via~GGI~~---~~dv~kal~-lGAd~V~iGr~~l~~ 318 (371)
++ .||||+.||..+ ..|+.+.-. .|++.||+.|...++
T Consensus 207 ~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 207 CQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred hc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 84 399999999999 889998877 699999999966554
No 127
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.48 E-value=1.5e-06 Score=80.31 Aligned_cols=77 Identities=22% Similarity=0.276 Sum_probs=63.3
Q ss_pred ccCHHHHHHHHHhCCCEEEEeC--CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 236 VLTAEDASLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
..++..++++.++|++.|..-+ -| +. .|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-sg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-SG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4688999999999999996521 12 11 3455678888888764 7999999999999999999999999999999
Q ss_pred hHHH
Q 017434 314 PVPF 317 (371)
Q Consensus 314 ~~l~ 317 (371)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8864
No 128
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.45 E-value=2.6e-06 Score=79.97 Aligned_cols=162 Identities=24% Similarity=0.253 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh---cCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC--
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN-- 216 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 216 (371)
.++++..+++|+.+|-|..|...++....+++.- ...|- -.+++- ++..++ ...... .-|.-+.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~Pv--L~KDFI-id~~QI-------~eA~~~-GADaVLLI~ 139 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPV--LRKDFI-IDPYQI-------YEARAA-GADAVLLIA 139 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-E--EEES----SHHHH-------HHHHHT-T-SEEEEEG
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCc--ccccCC-CCHHHH-------HHHHHc-CCCEeehhH
Confidence 4567777889999999999888777766665432 22331 111110 000000 000000 0111121
Q ss_pred ----HHHHHHHHh---hcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017434 217 ----WKDVKWLQT---ITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 289 (371)
Q Consensus 217 ----~~~i~~ir~---~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~ 289 (371)
.+.++.+.+ ..++-.+| .+-+.++++++.++|++.|-|.|+. +..-...+....++...++.++.+++.
T Consensus 140 ~~L~~~~l~~l~~~a~~lGle~lV-EVh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~ise 215 (254)
T PF00218_consen 140 AILSDDQLEELLELAHSLGLEALV-EVHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISE 215 (254)
T ss_dssp GGSGHHHHHHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHHHcCCCeEE-EECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEee
Confidence 122233332 23554443 3467777888888888877777643 223333445555666667667899999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 290 GGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 290 GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+||.+.+|+.+....|+|+|.||+.+|.+
T Consensus 216 SGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 216 SGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp SS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred cCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999999999964
No 129
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.44 E-value=2.2e-06 Score=79.26 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=62.6
Q ss_pred ccCHHHHHHHHHhCCCEEEEeC--CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 236 VLTAEDASLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
..++..++++.++|++.|..-+ -|.. .|..+.+.+..+++.. ++|||++|||.+++|+.+++++|||+|++|+
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4689999999999999996511 1211 2455567788887764 7999999999999999999999999999999
Q ss_pred hHHH
Q 017434 314 PVPF 317 (371)
Q Consensus 314 ~~l~ 317 (371)
.+..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8864
No 130
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.43 E-value=3.3e-05 Score=72.96 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred cCCCEEEEEc--cCHHHHHHHHHhCCCEEEEeCC-C--CcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH
Q 017434 227 TSLPILVKGV--LTAEDASLAIQYGAAGIIVSNH-G--ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA 301 (371)
Q Consensus 227 ~~~pv~vK~v--~~~e~a~~a~~~Gad~I~vs~~-g--g~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~ka 301 (371)
.++..+.=.. .+.+.++...+..-+.|.+-.. | |..-.......+.+.++++.. ++||++.+||++++|+.++
T Consensus 141 ~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~ 218 (258)
T PRK13111 141 HGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAI 218 (258)
T ss_pred cCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHH
Confidence 4555443222 2346677777777777765222 2 221111122345778887765 7999999999999999998
Q ss_pred HHcCCCEEEEchhHHHhhh
Q 017434 302 LALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 302 l~lGAd~V~iGr~~l~~~~ 320 (371)
+.. ||+|.+|++++..+.
T Consensus 219 ~~~-ADGviVGSaiv~~~~ 236 (258)
T PRK13111 219 AAV-ADGVIVGSALVKIIE 236 (258)
T ss_pred HHh-CCEEEEcHHHHHHHH
Confidence 875 999999999987654
No 131
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.43 E-value=9.5e-07 Score=83.51 Aligned_cols=76 Identities=22% Similarity=0.245 Sum_probs=63.1
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH-HcCCCEEEEchhHHHh
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL-ALGASGVFVGRPVPFS 318 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal-~lGAd~V~iGr~~l~~ 318 (371)
+.++.+.+.|++.|.+.+...-+...| +.++.+.++++.+ ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557888999999999965322122234 4889999998876 79999999999999999999 7999999999999984
No 132
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.41 E-value=3.3e-06 Score=78.34 Aligned_cols=76 Identities=28% Similarity=0.261 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH-HHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK-ALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k-al~lGAd~V~iGr~~l~ 317 (371)
.+.++.+.++|+|.|.+++........+ +.++.+.++++.+ ++||+++|||++.+|+.+ ....|||+|++|++|.|
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h~ 232 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhhC
Confidence 4567899999999999976322111122 4688889998877 799999999999999999 55589999999998854
No 133
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.41 E-value=6.1e-06 Score=75.21 Aligned_cols=91 Identities=26% Similarity=0.271 Sum_probs=64.8
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-----cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 216 NWKDVKWLQTITSLPILVKGV-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-----~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
..+++.++++.++ ++.+|.+ ++.+. ++.+.++|+|.|+.+.. .. ...++.+.+..+++.++.++||
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG-~~---~~~at~~~v~~~~~~~~~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTG-FG---PGGATVEDVKLMKEAVGGRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCC-CC---CCCCCHHHHHHHHHHhCCCceE
Confidence 4577888888774 3333443 34443 57789999999999742 11 1234555555555555557999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEE
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~i 311 (371)
.++|||++.+++++.+.+||+.++.
T Consensus 178 k~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhccC
Confidence 9999999999999999999987653
No 134
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.40 E-value=4e-06 Score=78.12 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=79.3
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC---------------CCCc---CC-------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HGAR---QL------------- 263 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~---------------~gg~---~~------------- 263 (371)
..+.|+++.+.+++|+.+.+ +.+.|+++.+.++|++.+++.+ +|.+ .+
T Consensus 64 n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~ 143 (234)
T PRK13587 64 EFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWE 143 (234)
T ss_pred hHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCc
Confidence 46789999998899999986 6889999999999999998852 1111 00
Q ss_pred -----------------------------CC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 264 -----------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 264 -----------------------------~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
++ ..+.++.+.++.+.. ++||++.|||++.+|+.+++.+|+++|.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 144 EDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 00 123466677776665 799999999999999999999999999999
Q ss_pred hhHHH
Q 017434 313 RPVPF 317 (371)
Q Consensus 313 r~~l~ 317 (371)
++++.
T Consensus 222 ~a~~~ 226 (234)
T PRK13587 222 KAAHQ 226 (234)
T ss_pred HHHHh
Confidence 99874
No 135
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.38 E-value=2.1e-06 Score=84.88 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=73.0
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEEEccC----HHHHHHHHHhCCCEEEEeCCCCcCCC-CccchHHHHHHHHHHhcCCCcE
Q 017434 212 DRSLNWKDVKWLQTITSLPILVKGVLT----AEDASLAIQYGAAGIIVSNHGARQLD-YVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK~v~~----~e~a~~a~~~Gad~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~i~v 286 (371)
++++..+.++++++.. +.+|...+ .+.++.++++|+|.|+++++-..|.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4555667788888852 78888644 35678999999999999754322333 2233466677777776 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
|+ |+|.+.+++.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999886
No 136
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.34 E-value=4.8e-06 Score=78.39 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l-GAd~V~iGr~~l~ 317 (371)
.+.++.+.+.|++.|.++++.......+ ..++.+.++.+.. ++|||++|||++.+|+.+++.. ||++|++|+.+.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3557889999999999966432111122 3688888888876 7999999999999999999984 9999999999987
Q ss_pred h
Q 017434 318 S 318 (371)
Q Consensus 318 ~ 318 (371)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 4
No 137
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.33 E-value=2.1e-05 Score=73.40 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhc---CCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC-CH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRF---VLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NW 217 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 217 (371)
.++++..+++|+.+|-|..|...++....+++.-- .+| +-.+++- ++..++ ...... .-|.-+ ..
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~P--vL~KDFI-id~~QI-------~ea~~~-GADavLLI~ 132 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIP--VLRKDFI-LDEIQI-------REARAF-GASAILLIV 132 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCC--EEecccc-CCHHHH-------HHHHHc-CCCEEEeEH
Confidence 35677888999999988887766666665554321 122 1111110 000000 000000 001111 11
Q ss_pred -----HHHHHHHhh---cCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017434 218 -----KDVKWLQTI---TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 289 (371)
Q Consensus 218 -----~~i~~ir~~---~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~ 289 (371)
+.++.+.+. .++-.+| .+-+.++++++.++|++.|-|.|+.-. .-...+....++...++.++.+|+.
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LV-EVh~~~El~~a~~~ga~iiGINnRdL~---t~~vd~~~~~~L~~~ip~~~~~IsE 208 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLV-EVHTEDEAKLALDCGAEIIGINTRDLD---TFQIHQNLVEEVAAFLPPNIVKVGE 208 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEE-EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEc
Confidence 123322222 2444333 345667777777777777777664322 2223345556666777777889999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 290 GGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 290 GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
|||.+++|+.+.... +|+|.||+.++.+
T Consensus 209 SGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 209 SGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred CCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 999999999997766 9999999999864
No 138
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.32 E-value=8e-05 Score=68.31 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=104.7
Q ss_pred eecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCC---CC---CHHHHhccCC-CceEE--EEeecCC
Q 017434 67 TVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA---TS---SVEEVSSTGP-GIRFF--QLYVTKH 137 (371)
Q Consensus 67 ~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~---~~---~~eei~~~~~-~~~~~--QLy~~~d 137 (371)
+|.|++|+..+++.---+ |+ ...+.++....|.-++.-+.. .. .-+.+.+..+ ..+++ +--+..+
T Consensus 1 ki~g~~f~SRL~lGTgky-----~s-~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~t 74 (247)
T PF05690_consen 1 KIGGKEFRSRLILGTGKY-----PS-PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRT 74 (247)
T ss_dssp -ETTEEES-SEEEE-STS-----SS-HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SS
T ss_pred CcCCEEeecceEEecCCC-----CC-HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCC
Confidence 477889999998865221 11 235777777788765542221 11 2234444433 11111 1122334
Q ss_pred hHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 138 RNVDAQLVKRAERA-GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 138 ~~~~~~~~~~a~~a-G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
-+.-....+.++++ |-+.|-+-|- |. ..++. .|+-.+
T Consensus 75 A~EAv~~A~laRe~~~t~wIKLEVi-----------------~D-----------------------~~~L~--PD~~et 112 (247)
T PF05690_consen 75 AEEAVRTARLAREAFGTNWIKLEVI-----------------GD-----------------------DKTLL--PDPIET 112 (247)
T ss_dssp HHHHHHHHHHHHHTTS-SEEEE--B-----------------S------------------------TTT----B-HHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEe-----------------CC-----------------------CCCcC--CChhHH
Confidence 45445556666665 4455544331 00 00111 122112
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCC-CcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
.+--+.+.+. +.-|+-=...++-.++++.++||..|.--+.. |+ ..|..+...|..+.+.. ++|||.|+||.++
T Consensus 113 l~Aae~Lv~e-GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~p 187 (247)
T PF05690_consen 113 LKAAEILVKE-GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGTP 187 (247)
T ss_dssp HHHHHHHHHT-T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---SH
T ss_pred HHHHHHHHHC-CCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCCH
Confidence 2333333332 33333333456778999999999999864321 11 13456678888888887 8999999999999
Q ss_pred HHHHHHHHcCCCEEEEchhHHH
Q 017434 296 TDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.|+.+++++|||+|++-+++..
T Consensus 188 Sdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 188 SDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp HHHHHHHHTT-SEEEESHHHHT
T ss_pred HHHHHHHHcCCceeehhhHHhc
Confidence 9999999999999999998754
No 139
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.30 E-value=3.1e-06 Score=78.62 Aligned_cols=101 Identities=28% Similarity=0.413 Sum_probs=77.6
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC----------------------------CC-------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN----------------------------HG------- 259 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~----------------------------~g------- 259 (371)
..+.|+.+.+.+++|+.+.+ +.+.++++.+.++|++.++++. +|
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 45779999999999999996 5789999999999999999952 11
Q ss_pred CcC---------------------------CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017434 260 ARQ---------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 260 g~~---------------------------~~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~ 310 (371)
... .++ ..+.++.+.++++.+ ++|||++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 000 011 134677888888887 7999999999999999999999999999
Q ss_pred EchhHHHh
Q 017434 311 VGRPVPFS 318 (371)
Q Consensus 311 iGr~~l~~ 318 (371)
+|++++.+
T Consensus 219 vg~al~~g 226 (229)
T PF00977_consen 219 VGSALHEG 226 (229)
T ss_dssp ESHHHHTT
T ss_pred EehHhhCC
Confidence 99999754
No 140
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.30 E-value=1e-05 Score=75.48 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+.++.+.+.|++.|.+.+...... ...+.++.+.++++.+ ++||++.|||++.+|+.+++.+||++|++|+.++.
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~-~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGL-LEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCC-cCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 4668889999999999865311111 1235788899998887 79999999999999999998999999999999875
No 141
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.30 E-value=6.8e-05 Score=66.95 Aligned_cols=173 Identities=20% Similarity=0.107 Sum_probs=113.6
Q ss_pred ChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCC---CceEEEEeecCC----hHHHHHHHHHHHHcCCcEEEEecCC
Q 017434 90 PEGECATARAASAAGTIMTLSSWATSSVEEVSSTGP---GIRFFQLYVTKH----RNVDAQLVKRAERAGFKAIALTVDT 162 (371)
Q Consensus 90 ~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~---~~~~~QLy~~~d----~~~~~~~~~~a~~aG~~al~vtvd~ 162 (371)
.+.-..+++.+.+.|+..++... ..++.+.+..+ -+.++++-. .. .+...+.+++++++|++++.+..
T Consensus 12 ~~~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~-~~~~~~~~~~~~~a~~a~~~Gad~i~v~~-- 86 (201)
T cd00945 12 LEDIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGF-PTGLTTTEVKVAEVEEAIDLGADEIDVVI-- 86 (201)
T ss_pred HHHHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecC-CCCCCcHHHHHHHHHHHHHcCCCEEEEec--
Confidence 33445788888888987665332 22344433322 345666543 23 46677888999999999998743
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhh--cCCCEEEEEcc---
Q 017434 163 PRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTI--TSLPILVKGVL--- 237 (371)
Q Consensus 163 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~--~~~pv~vK~v~--- 237 (371)
|.. +. |. .+.....+.++.+++. .++|++++...
T Consensus 87 ~~~----------~~-~~------------------------------~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 87 NIG----------SL-KE------------------------------GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred cHH----------HH-hC------------------------------CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 110 00 00 0012234667777777 48999999862
Q ss_pred -CHHHH----HHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 238 -TAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 238 -~~e~a----~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+++.. +.+.+.|+++|+.+.... .+...+..+.++++..+.+++|++.||+.+.+++..++.+||+++.+|
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 126 KTADEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 44443 345689999999865211 122356677777776644689999999999999999999999999875
No 142
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.29 E-value=1e-05 Score=75.34 Aligned_cols=101 Identities=31% Similarity=0.386 Sum_probs=77.6
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC--------------CCC-c---CCC---C--------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN--------------HGA-R---QLD---Y-------- 265 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~--------------~gg-~---~~~---~-------- 265 (371)
..+.++.+.+.+++|+.+.+ +.+.|+++.++++|++.+++.. .|. + .+| +
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 46778899888889999886 5788999999999999998753 122 1 011 0
Q ss_pred ----------------------------ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 266 ----------------------------VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 266 ----------------------------~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
..+..+.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012334455555554 79999999999999999999999999999999986
Q ss_pred h
Q 017434 318 S 318 (371)
Q Consensus 318 ~ 318 (371)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 143
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.28 E-value=5.1e-05 Score=68.93 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCEEEEeCC--CCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 239 AEDASLAIQYGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.++..+....++|+|.+... |++.....+..++.+.++++..+ ..+|++++|||+ .+++.+++..|||.+.+||
T Consensus 116 ~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgs 194 (210)
T TIGR01163 116 PLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGS 194 (210)
T ss_pred CHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEECh
Confidence 34444444557888766432 21111122334455666655542 137899999996 7999999999999999999
Q ss_pred hHHH
Q 017434 314 PVPF 317 (371)
Q Consensus 314 ~~l~ 317 (371)
+++.
T Consensus 195 ai~~ 198 (210)
T TIGR01163 195 AIFG 198 (210)
T ss_pred HHhC
Confidence 9863
No 144
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.27 E-value=1.2e-05 Score=74.23 Aligned_cols=101 Identities=30% Similarity=0.435 Sum_probs=82.7
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC---------------CCCcC-----------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN---------------HGARQ----------------- 262 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~---------------~gg~~----------------- 262 (371)
..+.++++.+.+++||-+.+ +.+.++++.++++|++.++++. +|++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 45778999999999999986 6789999999999999999853 22220
Q ss_pred ----------------------------CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-CCCEEEE
Q 017434 263 ----------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-GASGVFV 311 (371)
Q Consensus 263 ----------------------------~~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l-GAd~V~i 311 (371)
.|+ ..+.++.+.++.+++ ++||+++|||+|-+|+..+..+ |..+|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 011 235778888888888 8999999999999999999889 9999999
Q ss_pred chhHHHh
Q 017434 312 GRPVPFS 318 (371)
Q Consensus 312 Gr~~l~~ 318 (371)
||+++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999853
No 145
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.25 E-value=0.00012 Score=68.81 Aligned_cols=156 Identities=18% Similarity=0.206 Sum_probs=99.6
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
+.+.+.+.++++.+.+.|+++|.+. .|.+ -|.- +.+.++ .+....+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELG--vPfS------------DPvA---------DGP~Iq----~A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELG--VPFS------------DPVA---------DGPTIQ----AAHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEec--CCCC------------CcCc---------cCHHHH----HHHHHHHHCCCCHH
Confidence 4477888999999999999999874 3432 1210 000000 01111222112233
Q ss_pred CCHHHHHHHHhh-cCCCEEEEEccCH------H-HHHHHHHhCCCEEEEeC---------------CCCc--------C-
Q 017434 215 LNWKDVKWLQTI-TSLPILVKGVLTA------E-DASLAIQYGAAGIIVSN---------------HGAR--------Q- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~-~~~pv~vK~v~~~------e-~a~~a~~~Gad~I~vs~---------------~gg~--------~- 262 (371)
..++.++.+|+. .++|+++=.-.++ + ..+.+.++|+|++.+-. ||=. .
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 467889999965 5889987664332 3 36789999999998831 1100 0
Q ss_pred -------------------CC--Cc---c---chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 263 -------------------LD--YV---P---ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 263 -------------------~~--~~---~---~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
.. +| + ...+.+..+++.. ++||..-=||++++++.+.... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 00 11 1 1234456666554 7999998899999999999999 9999999999
Q ss_pred HHhhh
Q 017434 316 PFSLA 320 (371)
Q Consensus 316 l~~~~ 320 (371)
+.-+.
T Consensus 237 V~~i~ 241 (265)
T COG0159 237 VKIIE 241 (265)
T ss_pred HHHHH
Confidence 87654
No 146
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.24 E-value=6.6e-06 Score=77.58 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=62.2
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
.+.++.+.++|+|.|.+++... ......+.++.+.++++.. ++||+++|||++.+|+.+++..| +|+|++|+.+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~-~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDK-DGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCc-ccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 3557888999999999965311 1112345788889888876 79999999999999999999988 999999999876
Q ss_pred h
Q 017434 318 S 318 (371)
Q Consensus 318 ~ 318 (371)
+
T Consensus 235 ~ 235 (254)
T TIGR00735 235 R 235 (254)
T ss_pred C
Confidence 3
No 147
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.21 E-value=6.2e-06 Score=81.63 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=71.1
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEEEc--cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEE
Q 017434 212 DRSLNWKDVKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK~v--~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via 288 (371)
+|++..+.++.+++. ++++.++.. ...+.++.+.++|+|.|+++.+...+.+.+.. .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 445556778888885 555544442 23466889999999999996532223333333 455566666665 699999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999996
No 148
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.19 E-value=1.5e-05 Score=74.41 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+-++.+.++|++.|.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 31 ~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 31 ELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 567888899999999876432 1123456788899998887 69999999999999999999999999999998874
No 149
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.18 E-value=3.7e-05 Score=69.97 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCcC-CC--CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGARQ-LD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.+.+++..+.+.|+|+|.++.-..+. .. ..+..++.+.++++..+ ++||++.||| +.+++.+++.+||++|.+|+
T Consensus 112 ~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 112 HTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGI-TPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEeH
Confidence 57789999999999999986421111 11 11223778888877762 4999999999 68999999999999999999
Q ss_pred hHHH
Q 017434 314 PVPF 317 (371)
Q Consensus 314 ~~l~ 317 (371)
.+..
T Consensus 190 ~i~~ 193 (212)
T PRK00043 190 AITG 193 (212)
T ss_pred Hhhc
Confidence 8653
No 150
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.17 E-value=7e-05 Score=68.05 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCEEEEEc--cC-HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 218 KDVKWLQTITSLPILVKGV--LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v--~~-~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.++++++ .++++++-.. .+ .++++.+.+.|+|.|.+.. |......++..++.+.++++.++ ..++.++||| +
T Consensus 93 ~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~ 168 (206)
T TIGR03128 93 GAVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-N 168 (206)
T ss_pred HHHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-C
Confidence 44555555 5888887643 22 4788889999999998853 21111123445666777777664 4677779999 6
Q ss_pred HHHHHHHHHcCCCEEEEchhHHH
Q 017434 295 GTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+++.+++..||+.|.+||.++.
T Consensus 169 ~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHHcCCCEEEEeehhcC
Confidence 89999999999999999999753
No 151
>PLN02411 12-oxophytodienoate reductase
Probab=98.17 E-value=2.9e-05 Score=77.71 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=68.3
Q ss_pred CCHHHHHHHHhhcC-CCEEEEEccC-----------HH----HHHHHHHh------CCCEEEEeCCCCc---C-C--CCc
Q 017434 215 LNWKDVKWLQTITS-LPILVKGVLT-----------AE----DASLAIQY------GAAGIIVSNHGAR---Q-L--DYV 266 (371)
Q Consensus 215 ~~~~~i~~ir~~~~-~pv~vK~v~~-----------~e----~a~~a~~~------Gad~I~vs~~gg~---~-~--~~~ 266 (371)
|..|+|+.||+.++ -.|.+|+... .+ .++.+.+. |+|+|.||..... + . ..+
T Consensus 217 F~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~ 296 (391)
T PLN02411 217 FLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG 296 (391)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC
Confidence 67799999999984 3588887531 11 23344432 5999999863210 0 0 011
Q ss_pred cc--hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 267 PA--TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 267 ~~--~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
+. .......+++.+ ++|||+.|+| +.+++.++++.| ||.|.+||+++.
T Consensus 297 ~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 297 SEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 11 113446677777 6899999999 579999999999 999999999985
No 152
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.15 E-value=2.1e-05 Score=74.09 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+-++.+.+.|++.|.+.+..+.. ...+..++.++++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 366788889999999997654321 23367888999998887 79999999999999999999999999999998875
No 153
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.15 E-value=0.00014 Score=73.79 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCCCEEEEEc--cC-HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 218 KDVKWLQTITSLPILVKGV--LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v--~~-~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.++..++ .+.++++..+ .+ .+.++.+.+.|+|+|.++. |......++..++.+.++++.+ ++||++.||| +
T Consensus 98 ~~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~ 172 (430)
T PRK07028 98 DAVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-D 172 (430)
T ss_pred HHHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-C
Confidence 34555555 5777776422 23 4557888999999998752 2211112234456777777765 5999999999 5
Q ss_pred HHHHHHHHHcCCCEEEEchhHHH
Q 017434 295 GTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+++.++++.||+.|.+||.++.
T Consensus 173 ~~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 173 AETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHHcCCCEEEEChHHcC
Confidence 89999999999999999998764
No 154
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.14 E-value=0.00015 Score=65.48 Aligned_cols=94 Identities=23% Similarity=0.198 Sum_probs=68.4
Q ss_pred HHHHHHHhhcCCCEEE--EEccCHHHHHHHHHhCCCEEEEeC-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 218 KDVKWLQTITSLPILV--KGVLTAEDASLAIQYGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~v--K~v~~~e~a~~a~~~Gad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.++.+++ .++++++ =+..+++++..+...|+|.+.+.- +.+... +.+...+.+.++++.. ++|++++|||+
T Consensus 94 ~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~--~~~i~~~GGI~- 168 (202)
T cd04726 94 KAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLL--GVKVAVAGGIT- 168 (202)
T ss_pred HHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhc--CCCEEEECCcC-
Confidence 34555554 4777765 345788888888999999998841 111111 1244566777776553 79999999996
Q ss_pred HHHHHHHHHcCCCEEEEchhHH
Q 017434 295 GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+++.+++..|||+|.+||++.
T Consensus 169 ~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHHhcCCCEEEEeehhc
Confidence 9999999999999999999975
No 155
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.12 E-value=6.1e-05 Score=70.31 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh---cCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHH
Q 017434 143 QLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 219 (371)
Q Consensus 143 ~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (371)
++++..++.|+.+|-|..|.+.+....++++.- ..+| +-.+++- ++..++.++...|+...+.- -.-+.-+.
T Consensus 70 ~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v~~P--vL~KDFi-iD~yQI~~Ar~~GADavLLI--~~~L~~~~ 144 (254)
T COG0134 70 EIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAVDLP--VLRKDFI-IDPYQIYEARAAGADAVLLI--VAALDDEQ 144 (254)
T ss_pred HHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhcCCC--eeeccCC-CCHHHHHHHHHcCcccHHHH--HHhcCHHH
Confidence 466777889999999999999987777776433 3344 2222220 01111111111122221110 01122232
Q ss_pred HHHH---HhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 220 VKWL---QTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 220 i~~i---r~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
++.+ ....++-++| .+-+.++++++.++|++.|-|.|+.-+.+ ...++...++...++.++.+|..+||++++
T Consensus 145 l~el~~~A~~LGm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~IsESGI~~~~ 220 (254)
T COG0134 145 LEELVDRAHELGMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVILISESGISTPE 220 (254)
T ss_pred HHHHHHHHHHcCCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEEEecCCCCCHH
Confidence 3333 3344666554 35789999999999999999988643322 334455666667777778999999999999
Q ss_pred HHHHHHHcCCCEEEEchhHHHh
Q 017434 297 DVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l~~ 318 (371)
|+.+....||+++.||+++|..
T Consensus 221 dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 221 DVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHHHHcCCCEEEecHHHhcC
Confidence 9999999999999999999964
No 156
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11 E-value=2.2e-05 Score=73.49 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=76.7
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC--------------CCCc-------------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN--------------HGAR------------------- 261 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~--------------~gg~------------------- 261 (371)
..+.|+.+.+.+ .|+.+.+ +.+.++++.+.++|++.+++.+ +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 467788888877 7988886 5788999999999999988753 1110
Q ss_pred --C------------------------CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc-----C-CC
Q 017434 262 --Q------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL-----G-AS 307 (371)
Q Consensus 262 --~------------------------~~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l-----G-Ad 307 (371)
. .++ ..+.++.+.++++.. ++|||++|||++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 0 001 124667777777765 7999999999999999999887 6 99
Q ss_pred EEEEchhHHHh
Q 017434 308 GVFVGRPVPFS 318 (371)
Q Consensus 308 ~V~iGr~~l~~ 318 (371)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998764
No 157
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.10 E-value=0.0004 Score=64.10 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|...+.+.+++++++|++.+= +|.=- | .++ .+-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~lH--~DvmD----------G-----------------------------~Fv---pn~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVVH--FDVMD----------N-----------------------------HYV---PNLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEE--Eeccc----------C-----------------------------ccc---Cccc
Confidence 35777788899999999998764 44200 0 011 0123
Q ss_pred CCHHHHHHHHhh-cCCCEEEEE-ccCHHH-HHHHHHhCCCEEEEeCC---------------CCc---------C-----
Q 017434 215 LNWKDVKWLQTI-TSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GAR---------Q----- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~-~~~pv~vK~-v~~~e~-a~~a~~~Gad~I~vs~~---------------gg~---------~----- 262 (371)
+..+.++++|+. ++.|+=+=. +.+|+. ++...++|+|.|+++-- |-+ .
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 456778999887 577866654 345654 67788899999998521 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 263 -----LD-----------YV----PATVMALEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 263 -----~~-----------~~----~~~~~~l~~i~~~~~~---~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
.| +| +..++-+.++++.... ++||.++|||. .+++.+..+.|||.+.+||.++..
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~- 201 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQ- 201 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC-
Confidence 01 12 2345566666665531 48999999998 899999999999999999986521
Q ss_pred hcCChHHHHHHHHHHHHHH
Q 017434 320 AVDGEAGVRKVLQMLRDEF 338 (371)
Q Consensus 320 ~~~G~~gv~~~l~~l~~el 338 (371)
+...+.++.+++.+
T Consensus 202 -----~d~~~~i~~l~~~~ 215 (220)
T PRK08883 202 -----PDYKAVIDEMRAEL 215 (220)
T ss_pred -----CCHHHHHHHHHHHH
Confidence 12344555555443
No 158
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.10 E-value=3.4e-05 Score=72.76 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=63.9
Q ss_pred CH-HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 238 TA-EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 238 ~~-e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
++ +.++.+.+.|++.+.+.+.-+. .......++.+.++++.+ ++||+++|||++.+|+.+++.+||+.|.+|+.++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 5578888999999999865321 113456788899998887 7999999999999999999999999999999886
Q ss_pred H
Q 017434 317 F 317 (371)
Q Consensus 317 ~ 317 (371)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
No 159
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.05 E-value=5.3e-05 Score=72.00 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=70.0
Q ss_pred HHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCC
Q 017434 217 WKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGV 292 (371)
Q Consensus 217 ~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI 292 (371)
.+.++.+|+..+ ...+.-.+.+.|+++.+.++|+|.|.+.|- +.+.+.++.+..+ +++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888888765 223334568999999999999999988662 4556666665533 36779999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+.+.+.++..+|+|.+.+|+++.
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 89999999999999999999775
No 160
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.05 E-value=0.002 Score=61.61 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=75.7
Q ss_pred cCHHHHHHHH-HhCCCEEEEe--C-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVS--N-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G--GI~~~~dv~kal~lGAd~V~ 310 (371)
.++++++.+. +.|+|++-++ + ||-+ .+..+-.++.|.++++.+ ++|+++-| ||. .+++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~-~e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGIS-PEDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEE
Confidence 5789998887 4699999994 3 4422 222233778899999887 79999999 986 7999999999999999
Q ss_pred EchhHHHhhhc-------CCh-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 311 VGRPVPFSLAV-------DGE-----AGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 311 iGr~~l~~~~~-------~G~-----~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
+.+.+..+... ..+ .-.....+.+++..+..|..+|..
T Consensus 229 v~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 229 VATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99988653210 000 112333455666667777777643
No 161
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.05 E-value=4.4e-05 Score=70.88 Aligned_cols=102 Identities=27% Similarity=0.293 Sum_probs=74.1
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCC--------------CCc--CCC--------------
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH--------------GAR--QLD-------------- 264 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~--------------gg~--~~~-------------- 264 (371)
..+.++++.+.+++|+++.+ +.+.++++.+.+.|++.+++... |.- .+|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 45778888888899999885 68899999999999999988421 110 000
Q ss_pred CccchHHHHHHH------------------------HHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 265 YVPATVMALEEV------------------------VQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 265 ~~~~~~~~l~~i------------------------~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
......+.+..+ .+.+ .++|||++|||++.+|+.++..+|+++|.+|++++++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 111122222222 2221 2689999999999999999999999999999999864
No 162
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=98.05 E-value=5.6e-05 Score=73.40 Aligned_cols=188 Identities=14% Similarity=0.182 Sum_probs=113.4
Q ss_pred HHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh----cCCCCcccccccccccc
Q 017434 117 VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR----FVLPPHLTLKNYEGLYI 192 (371)
Q Consensus 117 ~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~----~~~p~~~~~~~~~~~~~ 192 (371)
+.|++++.|...++. ...|+ .++++..++.|+.+|-|-.|...++....+++.- ..+| +-.+++- ++.
T Consensus 122 IAEvKrASPSkG~I~--~~~dp---~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lP--vLrKDFI-ID~ 193 (338)
T PLN02460 122 IAEVKKASPSRGVLR--ENFDP---VEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCP--LLCKEFI-VDA 193 (338)
T ss_pred EeeeccCCCCCCccC--CCCCH---HHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCC--Eeecccc-CCH
Confidence 346666666333332 22344 3567777889999999999999988888776532 3334 1222210 111
Q ss_pred CCCCCCCcchhhhHhhhhcccCCC---HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHh-CCCEEEEeCCCCcCCCCccc
Q 017434 193 GKMDKTDDSGLASYVANQIDRSLN---WKDVKWLQTITSLPILVKGVLTAEDASLAIQY-GAAGIIVSNHGARQLDYVPA 268 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~-Gad~I~vs~~gg~~~~~~~~ 268 (371)
.++.++...|+...+. .-.-+. .+.+-.+.+..++-++| .+-+.++++++.++ |++.|-|.|+.-.++ ..
T Consensus 194 yQI~eAr~~GADAVLL--IaaiL~~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf---~v 267 (338)
T PLN02460 194 WQIYYARSKGADAILL--IAAVLPDLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETF---EV 267 (338)
T ss_pred HHHHHHHHcCCCcHHH--HHHhCCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcc---eE
Confidence 1111121122222221 011122 33344444455776654 45789999999998 999999988643322 22
Q ss_pred hHHHHHHHHH-----Hh-cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 269 TVMALEEVVQ-----AA-KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 269 ~~~~l~~i~~-----~~-~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
.+....++.. .+ +.++.+++.+||++++|+.....+|||+|.||..++..
T Consensus 268 Dl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 268 DISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 3333334433 23 23567899999999999999999999999999999964
No 163
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.04 E-value=0.0001 Score=69.74 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.+..+.|+++|+.++.+++.||.. .+.. + |. -.--..+.|+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~------------------------g-g~--------~Rm~~p~~I~ 67 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA------------------------G-GV--------ARMADPKMIE 67 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc------------------------C-Ce--------eecCCHHHHH
Confidence 456778999999999999999863 1100 0 00 0111457789
Q ss_pred HHHhhcCCCEEEEEcc-CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH
Q 017434 222 WLQTITSLPILVKGVL-TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK 300 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v~-~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k 300 (371)
.+++.+++||+.|... ...+++.+.++|+|.|.-|.. -.|.-+.+..++..+ ++|+++ |+++.++++.
T Consensus 68 aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~-------lrpad~~~~~~K~~f--~~~fma--d~~~l~EAlr 136 (293)
T PRK04180 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEV-------LTPADEEYHIDKWDF--TVPFVC--GARNLGEALR 136 (293)
T ss_pred HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCC-------CCchHHHHHHHHHHc--CCCEEc--cCCCHHHHHH
Confidence 9999999999999753 478999999999999963321 112334555565555 677776 8999999999
Q ss_pred HHHcCCCEEEE
Q 017434 301 ALALGASGVFV 311 (371)
Q Consensus 301 al~lGAd~V~i 311 (371)
++.+|||.|.-
T Consensus 137 ai~~GadmI~T 147 (293)
T PRK04180 137 RIAEGAAMIRT 147 (293)
T ss_pred HHHCCCCeeec
Confidence 99999998753
No 164
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=98.04 E-value=0.0012 Score=60.65 Aligned_cols=173 Identities=20% Similarity=0.137 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC------CCH----HHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 017434 92 GECATARAASAAGTIMTLSSWAT------SSV----EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~------~~~----eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd 161 (371)
.|+.-.+.+.+.|..-.++|..+ .+. .++.+..+++..+|++. .|.+.+.+..++..+.+-+ ++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~~-~~~~~mi~~a~~l~~~~~~-i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETIS-LDAEGMVEEAKELAKLAPN-IVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEee-CCHHHHHHHHHHHHHhCCC-eEEEe-
Confidence 46777888888888777877532 222 34445556788899975 5666555555555444322 33211
Q ss_pred CCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHH
Q 017434 162 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241 (371)
Q Consensus 162 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~ 241 (371)
|. +. --.+.++.+++. ++++.+=.+.+.+.
T Consensus 85 -----------------P~--T~------------------------------~Gl~A~~~L~~~-Gi~v~~T~vfs~~Q 114 (213)
T TIGR00875 85 -----------------PM--TS------------------------------EGLKAVKILKKE-GIKTNVTLVFSAAQ 114 (213)
T ss_pred -----------------CC--CH------------------------------HHHHHHHHHHHC-CCceeEEEecCHHH
Confidence 20 00 002345555543 88988888999999
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+..+.++|+++|... -||-.+.+...+..+.++.+.+. .+..|++ ..+|+..++.++..+|+|.|-+.-.++..
T Consensus 115 a~~Aa~aGa~yispy--vgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~vl~~ 191 (213)
T TIGR00875 115 ALLAAKAGATYVSPF--VGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDVMQQ 191 (213)
T ss_pred HHHHHHcCCCEEEee--cchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHHHHH
Confidence 999999999988763 34444455566777777766552 3566666 55999999999999999999999988877
Q ss_pred hh
Q 017434 319 LA 320 (371)
Q Consensus 319 ~~ 320 (371)
+.
T Consensus 192 l~ 193 (213)
T TIGR00875 192 LF 193 (213)
T ss_pred HH
Confidence 64
No 165
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.03 E-value=0.00013 Score=67.67 Aligned_cols=84 Identities=27% Similarity=0.403 Sum_probs=61.6
Q ss_pred HHhhcCCCEEEEEcc---------CHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEe
Q 017434 223 LQTITSLPILVKGVL---------TAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD 289 (371)
Q Consensus 223 ir~~~~~pv~vK~v~---------~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~ 289 (371)
+.+.+++|+++=... +.++ ++.+.++|+|+|.++..+ .++.+.++.+.. ++||++.
T Consensus 117 ~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~ 185 (235)
T cd00958 117 EAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIA 185 (235)
T ss_pred HHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEe
Confidence 334568888873311 2333 455889999999995421 456777777765 6899999
Q ss_pred cCC--CCHHH----HHHHHHcCCCEEEEchhHHH
Q 017434 290 GGV--RRGTD----VFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 290 GGI--~~~~d----v~kal~lGAd~V~iGr~~l~ 317 (371)
||+ .+.+| +.+++.+||++|.+||.++.
T Consensus 186 GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 186 GGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 997 66666 77778899999999999875
No 166
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.02 E-value=4.2e-05 Score=71.65 Aligned_cols=101 Identities=17% Similarity=0.038 Sum_probs=75.9
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCC---------------CCc--------------C---
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH---------------GAR--------------Q--- 262 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~---------------gg~--------------~--- 262 (371)
..+.|+.+.+.+.+|+.+.+ +.+.++++.+++.|++.|++++. |.+ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 45678888888889998885 68999999999999999988521 110 0
Q ss_pred --C-----------------------------CC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH---HcCC
Q 017434 263 --L-----------------------------DY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL---ALGA 306 (371)
Q Consensus 263 --~-----------------------------~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal---~lGA 306 (371)
+ ++ ..+.++.+.++++.. ++|||++|||++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 01 123455566666554 79999999999999999864 3599
Q ss_pred CEEEEchhHHHh
Q 017434 307 SGVFVGRPVPFS 318 (371)
Q Consensus 307 d~V~iGr~~l~~ 318 (371)
++|.+|++++.+
T Consensus 220 ~gvivg~Al~~g 231 (243)
T TIGR01919 220 SVAIGGKLLYAR 231 (243)
T ss_pred eEEEEhHHHHcC
Confidence 999999998754
No 167
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.01 E-value=0.00021 Score=67.85 Aligned_cols=87 Identities=29% Similarity=0.364 Sum_probs=62.8
Q ss_pred HHHHHhhcCCCEEEEE---------ccCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 220 VKWLQTITSLPILVKG---------VLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~---------v~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
+.+++..+++|+++-. ..+.+. ++.+.+.|+|+|..+-.| ..+.+.++.+.. ++||
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ipV 199 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVPV 199 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCCE
Confidence 4444455688987631 123333 577889999999986321 346666666654 6999
Q ss_pred EEecCCC--CHHHHHHHH----HcCCCEEEEchhHHH
Q 017434 287 FLDGGVR--RGTDVFKAL----ALGASGVFVGRPVPF 317 (371)
Q Consensus 287 ia~GGI~--~~~dv~kal----~lGAd~V~iGr~~l~ 317 (371)
+++|||+ +.+++++.+ ++||+++.+||.++.
T Consensus 200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 9999999 777777665 899999999998875
No 168
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.00 E-value=0.00033 Score=63.40 Aligned_cols=70 Identities=30% Similarity=0.333 Sum_probs=47.7
Q ss_pred HHHHHHhCCCEEEEeCCCCcCC-----------CCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017434 242 ASLAIQYGAAGIIVSNHGARQL-----------DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~-----------~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~ 310 (371)
|..+.++|+|.|.. .||+.- ....|++.+..+|.+++ ++||++..|+... .+--++++||.+|+
T Consensus 138 A~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~v-T~PmAiaaGAsGVG 212 (242)
T PF04481_consen 138 AEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSAV-TAPMAIAAGASGVG 212 (242)
T ss_pred HHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcchh-hHHHHHHcCCcccc
Confidence 55566666666654 333210 01234666677777777 8999999999854 45558899999999
Q ss_pred EchhHH
Q 017434 311 VGRPVP 316 (371)
Q Consensus 311 iGr~~l 316 (371)
+|+.+-
T Consensus 213 VGSavn 218 (242)
T PF04481_consen 213 VGSAVN 218 (242)
T ss_pred hhHHhh
Confidence 999764
No 169
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.98 E-value=3.9e-05 Score=71.04 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=62.4
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCC-CcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHG-ARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
..++-.|+++.++||..|.--+.. |+ ..|..+...|.-+.+.. ++||+.++||.+++|+.+++++|||+|++.+.
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence 356778999999999999853321 11 12455667787777765 79999999999999999999999999999998
Q ss_pred HHH
Q 017434 315 VPF 317 (371)
Q Consensus 315 ~l~ 317 (371)
+..
T Consensus 221 Iak 223 (267)
T CHL00162 221 VAQ 223 (267)
T ss_pred eec
Confidence 874
No 170
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.96 E-value=0.00011 Score=65.46 Aligned_cols=78 Identities=24% Similarity=0.214 Sum_probs=60.7
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCc---CCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGAR---QLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~---~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.+.+++..+.+.|+|+|.++..... +....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 5788999999999999998643111 1111345677788777664 79999999995 7999999999999999999
Q ss_pred hHHH
Q 017434 314 PVPF 317 (371)
Q Consensus 314 ~~l~ 317 (371)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 8763
No 171
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.95 E-value=0.0001 Score=78.33 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh---cCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWK 218 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (371)
.++++..++.|+.+|-|..|...++....+++.- ..+| +-.+++- ++..++.++...|+...+. .-.-+.-+
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P--vLrKDFI-id~~QI~ea~~~GADavLL--I~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAVHIP--VLRKDFI-VTDYQIWEARAHGADLVLL--IVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhCCCC--EEecccc-CCHHHHHHHHHcCCCEeeh--hHhhcCHH
Confidence 3566777889999999999988888777776433 3334 1222220 1111111111111111111 01112223
Q ss_pred HHHHHH---hhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 219 DVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 219 ~i~~ir---~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
.++.+. ...++-++| .+-+.++++++.++|++.|-|.|+.-. .-...++...++...++.++.+|+.+||.++
T Consensus 148 ~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGINnRdL~---tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~ 223 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGINARNLK---DLKVDVNKYNELAADLPDDVIKVAESGVFGA 223 (695)
T ss_pred HHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCCCc---cceeCHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 344333 344666654 457899999999999999989886432 3233455556666667667889999999999
Q ss_pred HHHHHHHHcCCCEEEEchhHHHh
Q 017434 296 TDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+|+..+..+|||+|.||+.+|.+
T Consensus 224 ~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 224 VEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred HHHHHHHHCCCCEEEECHHhhCC
Confidence 99999999999999999988753
No 172
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.94 E-value=0.00037 Score=65.76 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=95.8
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|.+.+.++++...+.|++.+.+.+ |.. -|. . +.+.+ ..+....+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfS------------DP~--A-------DGpvI----q~A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFS------------DPV--A-------DGPVI----QKASQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SS------------SCT--T-------SSHHH----HHHHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCC--C-------CCHHH----HHHHHHHHHCCCCHH
Confidence 45778899999999999999998743 432 121 0 00000 001111222112223
Q ss_pred CCHHHHHHHH-hhcCCCEEEEEcc------CHH-HHHHHHHhCCCEEEEeC---------------CCCc----------
Q 017434 215 LNWKDVKWLQ-TITSLPILVKGVL------TAE-DASLAIQYGAAGIIVSN---------------HGAR---------- 261 (371)
Q Consensus 215 ~~~~~i~~ir-~~~~~pv~vK~v~------~~e-~a~~a~~~Gad~I~vs~---------------~gg~---------- 261 (371)
..++.++++| +..+.|+++=.=. ..| .++.+.++|+|++.+-. ||=.
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3467889999 6678999876532 222 47788899999999831 1100
Q ss_pred ------------------CCC--Cc-----cc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 262 ------------------QLD--YV-----PA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 262 ------------------~~~--~~-----~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
... +| +. ..+.+..+++.. ++||++-=||++++|+.+.. .|||+|.+|+++
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 000 11 11 224466666554 79999988999999999887 999999999999
Q ss_pred HHhhhcCC
Q 017434 316 PFSLAVDG 323 (371)
Q Consensus 316 l~~~~~~G 323 (371)
+.-+...+
T Consensus 230 v~~i~~~~ 237 (259)
T PF00290_consen 230 VKIIEENG 237 (259)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 97665433
No 173
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.93 E-value=7.3e-05 Score=69.64 Aligned_cols=96 Identities=26% Similarity=0.363 Sum_probs=63.8
Q ss_pred HHHHHHHHhh---cCCCEEEEEccCHHH-------------HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh
Q 017434 217 WKDVKWLQTI---TSLPILVKGVLTAED-------------ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA 280 (371)
Q Consensus 217 ~~~i~~ir~~---~~~pv~vK~v~~~e~-------------a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 280 (371)
.+.++.+++. +++|+++-..++.++ ++.+.++|+|.|.++..+. ..........+.++.+..
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--ccccHHHHHHHHHHHHhc
Confidence 3455555554 478888775444333 5678999999999986411 111223344444444433
Q ss_pred cCCCc----EEEecCC------CCHHHHHHHHHcCC--CEEEEchhHH
Q 017434 281 KGRVP----VFLDGGV------RRGTDVFKALALGA--SGVFVGRPVP 316 (371)
Q Consensus 281 ~~~i~----via~GGI------~~~~dv~kal~lGA--d~V~iGr~~l 316 (371)
.+| |.++||| ++.+++.+++.+|| .++..||.+.
T Consensus 189 --~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 189 --PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp --SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred --CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 466 9999999 99999999999999 8888888654
No 174
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.93 E-value=0.00016 Score=73.48 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=123.4
Q ss_pred HHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhh---cCCCCccccccccccccCC
Q 017434 118 EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNR---FVLPPHLTLKNYEGLYIGK 194 (371)
Q Consensus 118 eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~---~~~p~~~~~~~~~~~~~~~ 194 (371)
.|++++.|....+ ....|+. ++++.. +.|+.+|-|..|...++....+++.- ..+| +-.+++- ++..+
T Consensus 54 aEiKraSPs~G~i--~~~~d~~---~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v~~P--vLrKDFi-id~~Q 124 (454)
T PRK09427 54 LECKKASPSKGLI--RDDFDPA---EIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIVTQP--ILCKDFI-IDPYQ 124 (454)
T ss_pred EEeecCCCCCCcc--CCCCCHH---HHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhCCCC--EEecccc-CCHHH
Confidence 4556665522221 2223443 455555 67899999988988887777776432 2233 1122210 11111
Q ss_pred CCCCCcchhhhHhhhhcccCCCHHHHHHHH---hhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHH
Q 017434 195 MDKTDDSGLASYVANQIDRSLNWKDVKWLQ---TITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVM 271 (371)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir---~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~ 271 (371)
+.++...|+...+. .-.-+.-+.++.+. ...++-.+| .+-+.++++++.++|++.|-|.|+.-. .-.-.+.
T Consensus 125 I~ea~~~GADavLL--I~~~L~~~~l~~l~~~a~~lGl~~lv-Evh~~~El~~al~~~a~iiGiNnRdL~---t~~vd~~ 198 (454)
T PRK09427 125 IYLARYYGADAILL--MLSVLDDEQYRQLAAVAHSLNMGVLT-EVSNEEELERAIALGAKVIGINNRNLR---DLSIDLN 198 (454)
T ss_pred HHHHHHcCCCchhH--HHHhCCHHHHHHHHHHHHHcCCcEEE-EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHH
Confidence 11121112222111 01112222333333 334665554 467899999999999999999886433 2223344
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHh
Q 017434 272 ALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLK 351 (371)
Q Consensus 272 ~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~ 351 (371)
...++...+++++.+++.+||.+++|+..+ ..|||+|.||+.+|.+- . ..+.+..|. ......||.++.+
T Consensus 199 ~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~~---d---~~~~~~~L~---~~~vKICGit~~e 268 (454)
T PRK09427 199 RTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAED---D---LELAVRKLI---LGENKVCGLTRPQ 268 (454)
T ss_pred HHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCCC---C---HHHHHHHHh---ccccccCCCCCHH
Confidence 555566666677889999999999999886 45899999999999641 1 222333332 2345779999988
Q ss_pred hhc
Q 017434 352 EIT 354 (371)
Q Consensus 352 ~l~ 354 (371)
|++
T Consensus 269 da~ 271 (454)
T PRK09427 269 DAK 271 (454)
T ss_pred HHH
Confidence 876
No 175
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.92 E-value=0.00011 Score=69.10 Aligned_cols=96 Identities=27% Similarity=0.259 Sum_probs=67.9
Q ss_pred CCHHHHHHHHhhcCCCEEEEEc-----cCHHH-----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh----
Q 017434 215 LNWKDVKWLQTITSLPILVKGV-----LTAED-----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---- 280 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v-----~~~e~-----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---- 280 (371)
...++|+++++.++-+..+|.+ ++.++ ++.+.++|+|+|..|+.-+ .+..+.+.+.-+++.+
T Consensus 116 ~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~ 191 (257)
T PRK05283 116 VGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMG 191 (257)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcc
Confidence 3456788888876535778876 34442 3568899999999986421 2234555555555554
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 281 -KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 281 -~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
++++.|-++||||+.+++.+++.+|.+.. |.-|+
T Consensus 192 ~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l--g~~~~ 226 (257)
T PRK05283 192 VAKTVGFKPAGGVRTAEDAAQYLALADEIL--GADWA 226 (257)
T ss_pred cCCCeeEEccCCCCCHHHHHHHHHHHHHHh--Chhhc
Confidence 34789999999999999999999987753 54444
No 176
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.89 E-value=0.00014 Score=67.27 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.++...+.|+|.+.+..-.+. ..+.+..++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4577888899999999764222 123356788899898876 79999999999999999999999999999998874
No 177
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.89 E-value=8.2e-05 Score=68.88 Aligned_cols=76 Identities=29% Similarity=0.355 Sum_probs=62.0
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+.|+.+.+.|+|.+.|....+. ....+..++.+.++++.+ ++||++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35678888899999999753221 112455788899998887 69999999999999999999999999999997763
No 178
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.88 E-value=0.00077 Score=61.07 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=46.7
Q ss_pred HhCCCEEEEeC-CCCc-CCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 247 QYGAAGIIVSN-HGAR-QLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 247 ~~Gad~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
..++|++.+.. +.|. .........+.+.++++..+ .++|+++.|||+. +++.+++..|||+|.+||+++.
T Consensus 125 ~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 125 LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 34488887643 2221 11122233444555555442 1489999999995 9999999999999999999874
No 179
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.87 E-value=0.005 Score=58.96 Aligned_cols=108 Identities=16% Similarity=0.287 Sum_probs=78.4
Q ss_pred cCHHHHHHHHH-hCCCEEEEeC---CCCcCCCCccchHHHHHHHHHHhcCCCcEEEec--CCCCHHHHHHHHHcCCCEEE
Q 017434 237 LTAEDASLAIQ-YGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAKGRVPVFLDG--GVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 237 ~~~e~a~~a~~-~Gad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G--GI~~~~dv~kal~lGAd~V~ 310 (371)
.++|+++.+.+ .|+|++.++. ||-.. ....-.++.|.++++.+ ++|+++=| ||. .+++.+++.+|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIP-EEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence 47899999986 9999999752 43221 11233678899999888 79999999 997 7889999999999999
Q ss_pred EchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 311 VGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 311 iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
+++-+..+... .. ..-+....+.+++.+++.|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977543210 00 1223445567777888888888753
No 180
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.87 E-value=0.0013 Score=61.07 Aligned_cols=154 Identities=15% Similarity=0.128 Sum_probs=99.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|...+.+.+++++++|++.+ ++|.=- | .++ .+-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~DimD----------g-----------------------------~fv---pn~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVMD----------G-----------------------------HFV---PNLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc----------C-----------------------------ccC---CCcC
Confidence 4577778899999999998876 444200 0 000 0112
Q ss_pred CCHHHHHHHHhhc-CCCEEEEEc-cCHHH-HHHHHHhCCCEEEEeCCCCcC-----------------------------
Q 017434 215 LNWKDVKWLQTIT-SLPILVKGV-LTAED-ASLAIQYGAAGIIVSNHGARQ----------------------------- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~-~~pv~vK~v-~~~e~-a~~a~~~Gad~I~vs~~gg~~----------------------------- 262 (371)
+-.+.++++|+.+ ++|+-+|.- .+++. ++.+.++|+|.|+++..++..
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 3457799999988 899999975 55654 678899999999996432210
Q ss_pred ---C--C---------------Cc---cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 263 ---L--D---------------YV---PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 263 ---~--~---------------~~---~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
+ + +. +..++-+.++++..+ .+.|.++|||+ .+.+.++..+|||.+.+||++..+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~-~~~I~VdGGI~-~~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYP-HLNIQVDGGIN-LETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcc-cCeEEECCCCC-HHHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 0 00 112233444444332 47899999998 678888999999999999986421
Q ss_pred hcCChHHHHHHHHHHHHHHHH
Q 017434 320 AVDGEAGVRKVLQMLRDEFEL 340 (371)
Q Consensus 320 ~~~G~~gv~~~l~~l~~el~~ 340 (371)
+...+.++.++++++.
T Consensus 208 -----~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 -----KDRKQAIELLRESVQK 223 (228)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1134455666665554
No 181
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=8.4e-05 Score=80.53 Aligned_cols=142 Identities=28% Similarity=0.243 Sum_probs=100.1
Q ss_pred CCHHHHHHHHhhc-----CCCEEEEEccCHH---HHHHHHHhCCCEEEEeCC-CCcC---C---CCccchHHH-HHHHHH
Q 017434 215 LNWKDVKWLQTIT-----SLPILVKGVLTAE---DASLAIQYGAAGIIVSNH-GARQ---L---DYVPATVMA-LEEVVQ 278 (371)
Q Consensus 215 ~~~~~i~~ir~~~-----~~pv~vK~v~~~e---~a~~a~~~Gad~I~vs~~-gg~~---~---~~~~~~~~~-l~~i~~ 278 (371)
++.|+++++.--. .-.|.||.+.-.- -|.-..++.||-|.||+| ||+. + ....-+|+. |++-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4667766654322 3468899874221 144456778999999999 4442 1 111123333 333333
Q ss_pred H-----hcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhc--------------------------CC-hHH
Q 017434 279 A-----AKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV--------------------------DG-EAG 326 (371)
Q Consensus 279 ~-----~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~--------------------------~G-~~g 326 (371)
. +++++-+-.||+++||.|++-|-.+||+-.++++.-+.+++| .| ++-
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 2 345788999999999999999999999999999966655543 13 355
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHhhhccc
Q 017434 327 VRKVLQMLRDEFELTMALSGCRSLKEITRN 356 (371)
Q Consensus 327 v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 356 (371)
|.+++-.+.+|++.+|+.+|+++++|+-+.
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 889999999999999999999999998643
No 182
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.86 E-value=0.0011 Score=63.28 Aligned_cols=88 Identities=23% Similarity=0.236 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCCC
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVR 293 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~ 293 (371)
.+.++.+|+..+-..+.--+.+.+++..+.++|+|+|.+++-. +. .+.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~---~l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PE---ELAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HH---HHHHHHHHHhccCCCceEEEECCC-
Confidence 3557777776532222223578999999999999999997631 22 2233333222 26999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchhH
Q 017434 294 RGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~ 315 (371)
+.+++.++...|+|++.+|..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 6999999999999999777654
No 183
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.85 E-value=0.00032 Score=64.76 Aligned_cols=95 Identities=14% Similarity=0.038 Sum_probs=67.4
Q ss_pred HHHHHhhcCCCEEEEEc--cCHHHHHHHHHhCCCEEEEeCCCCcCC-CCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 220 VKWLQTITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQL-DYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v--~~~e~a~~a~~~Gad~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+..+|+..+--.++... .+.+++..+.+.|+|+|.++.---+.. +..+..++.+.++++.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 45555544322344442 367888889999999999975321111 12233456677777665 7999999999 699
Q ss_pred HHHHHHHcCCCEEEEchhHHH
Q 017434 297 DVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l~ 317 (371)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999998874
No 184
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.83 E-value=0.0012 Score=61.26 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCCCEEEEEcc-C-HHHHHHHHHhC-CCEEEEeC-CCCcCC-CCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017434 218 KDVKWLQTITSLPILVKGVL-T-AEDASLAIQYG-AAGIIVSN-HGARQL-DYVPATVMALEEVVQAAKGRVPVFLDGGV 292 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~-~-~e~a~~a~~~G-ad~I~vs~-~gg~~~-~~~~~~~~~l~~i~~~~~~~i~via~GGI 292 (371)
+.++++++. +.-+.+-... + .+.++...+.| +|+|.+.. +.+... ...+..++.+.++++... ++||.++|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCC
Confidence 446666553 3322222211 3 34455555553 99996642 222211 133445666777766543 5799999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTM 342 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m 342 (371)
+.+++.+.+.+|||.+.+||+++.+ +...+.++.++++++..|
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 5999999999999999999986531 224455666666666553
No 185
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.80 E-value=0.0016 Score=60.17 Aligned_cols=95 Identities=28% Similarity=0.341 Sum_probs=62.9
Q ss_pred HHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCC--Cc--CCCCc-cchHH-HHHHHHHHhcCCCcEEEecCCC
Q 017434 220 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHG--AR--QLDYV-PATVM-ALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~g--g~--~~~~~-~~~~~-~l~~i~~~~~~~i~via~GGI~ 293 (371)
++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-+.+ |+ ..+.. +..+. .+..+++.. .++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~-~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN-PDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc-CCCEEEEECCCC
Confidence 444444 3655443 4566788888889999988764321 11 11111 22222 223333322 368999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchhHHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.+++..++..|||+|.+|+.++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhC
Confidence 999999999999999999999985
No 186
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.79 E-value=0.00021 Score=66.83 Aligned_cols=74 Identities=28% Similarity=0.202 Sum_probs=61.0
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.|+...+.|+|.|.+..--+. .+.....+.+.++.+.+ .+||.+.|||+|.+|+.+++.+||+.|.+|+..+.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 5577788899999988643221 13346778899999887 79999999999999999999999999999998764
No 187
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.79 E-value=0.0039 Score=57.19 Aligned_cols=174 Identities=17% Similarity=0.154 Sum_probs=114.5
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC------C-C----HHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEec
Q 017434 92 GECATARAASAAGTIMTLSSWAT------S-S----VEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTV 160 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~------~-~----~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtv 160 (371)
.|+.-.+.+.+.|..-.++|..+ . . +.++++..+++..+|++. .|.+.+.+..++..+.+- .+++-+
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~~-~~~e~~i~~a~~l~~~~~-~~~iKI 84 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVS-TDAEGMVAEARKLASLGG-NVVVKI 84 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEEe-CCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 35666677777776656655421 1 2 234444556778889874 677766666666555422 233221
Q ss_pred CCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHH
Q 017434 161 DTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAE 240 (371)
Q Consensus 161 d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e 240 (371)
|. + . .-.+.++.+++. ++++.+-.+.+++
T Consensus 85 ------------------P~--T-----------------------------~-~gl~ai~~L~~~-gi~v~~T~V~s~~ 113 (211)
T cd00956 85 ------------------PV--T-----------------------------E-DGLKAIKKLSEE-GIKTNVTAIFSAA 113 (211)
T ss_pred ------------------cC--c-----------------------------H-hHHHHHHHHHHc-CCceeeEEecCHH
Confidence 10 0 0 013446666655 7899988899999
Q ss_pred HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 241 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 241 ~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~---~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+..+.++|+++|.. +-||-.+.+...+..+.++.+.+.. +..|++ .|+++..++..++.+|||.|-+.-.++.
T Consensus 114 Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r~~~ei~~a~~~Gad~vTv~~~vl~ 190 (211)
T cd00956 114 QALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIRNPQHVIEAALAGADAITLPPDVLE 190 (211)
T ss_pred HHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 999999999999654 4455445566667777777665532 334444 5799999999999999999999998887
Q ss_pred hhhc
Q 017434 318 SLAV 321 (371)
Q Consensus 318 ~~~~ 321 (371)
.+..
T Consensus 191 ~l~~ 194 (211)
T cd00956 191 QLLK 194 (211)
T ss_pred HHhc
Confidence 6643
No 188
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00049 Score=62.55 Aligned_cols=200 Identities=17% Similarity=0.171 Sum_probs=113.0
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC---Ccchh-HHhhhhcCCCCccccccccccccCCCCC-CCcc
Q 017434 127 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPR---LGRRE-ADIKNRFVLPPHLTLKNYEGLYIGKMDK-TDDS 201 (371)
Q Consensus 127 ~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~---~g~r~-~d~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~ 201 (371)
+...|+-. |.-.+++.++-+++..-...++-+++|- .|.+. +.+|..| |.+.-...++-.+.+.... ....
T Consensus 3 ~p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~ 78 (217)
T COG0269 3 PPLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFE 78 (217)
T ss_pred CcceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHH
Confidence 34678754 5555666777777665557777889986 34333 5555544 6544433322111110000 0000
Q ss_pred hhhhHhhhhc-ccCCCHHHHHHHHhhcCCCEEEEEc--cCHHHHH-HHHHhCCCEEEEeCCCCc--CCCCccchHHHHHH
Q 017434 202 GLASYVANQI-DRSLNWKDVKWLQTITSLPILVKGV--LTAEDAS-LAIQYGAAGIIVSNHGAR--QLDYVPATVMALEE 275 (371)
Q Consensus 202 ~~~~~~~~~~-~~~~~~~~i~~ir~~~~~pv~vK~v--~~~e~a~-~a~~~Gad~I~vs~~gg~--~~~~~~~~~~~l~~ 275 (371)
+.+.++.-.. .+.-+.+......+.++.-+.+=++ .++++.. .+.++|+|.+.+ |-|+ |..+-.+.++.|..
T Consensus 79 aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~ 156 (217)
T COG0269 79 AGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEK 156 (217)
T ss_pred cCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHH
Confidence 0001110000 1112333333333445666666654 4566654 455599999999 5444 23233334777888
Q ss_pred HHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHH
Q 017434 276 VVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFE 339 (371)
Q Consensus 276 i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~ 339 (371)
+++.......|-..|||. ++++..+...|++.|.+||.+.- ...+.+..+.+++++.
T Consensus 157 ik~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~------a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 157 IKKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITG------AKDPAEAARKFKEEID 213 (217)
T ss_pred HHHhhccCceEEEecCCC-HHHHHHHhcCCCCEEEECchhcC------CCCHHHHHHHHHHHHh
Confidence 877664347899999997 99999999999999999998763 2333445566666653
No 189
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.76 E-value=0.00013 Score=67.44 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=53.8
Q ss_pred HHHHHhCCCEEEEeC--CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 243 SLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 243 ~~a~~~Gad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
..+.+.|+ ++.+.. .-|+ ...+.++.+.++.+.. ++||+++|||++.+|+.++..+||++|.+|++++.+
T Consensus 148 ~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 148 DFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 44556777 555432 1122 2245788889998876 799999999999999999888999999999998764
No 190
>PRK06801 hypothetical protein; Provisional
Probab=97.75 E-value=0.0095 Score=57.13 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=75.5
Q ss_pred cCHHHHHHHH-HhCCCEEEEeCCCCcCCCCc--cchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSNHGARQLDYV--PATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~i~via~GG--I~~~~dv~kal~lGAd~V~i 311 (371)
.+++++++.. +.|+|++.++...-+..+.+ ...++.|.++++.+ ++|++.-|| |. .+++.+++.+|++.|-+
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKINF 232 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEEEe
Confidence 4678888877 89999999953211112223 24788899998887 699999998 86 68899999999999999
Q ss_pred chhHHHhhhc-------CC------h-HHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 312 GRPVPFSLAV-------DG------E-AGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 312 Gr~~l~~~~~-------~G------~-~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
++.+..+... .. . .-.....+.+++..+..|+.+|..
T Consensus 233 ~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 233 YTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred hhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654210 11 0 112333455667777777777643
No 191
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.75 E-value=0.00056 Score=62.47 Aligned_cols=100 Identities=33% Similarity=0.421 Sum_probs=72.0
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeC---------C------------CCcCC----------
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSN---------H------------GARQL---------- 263 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~---------~------------gg~~~---------- 263 (371)
+.+.|+++.+.+.+||..|.. .+.-+|+.+...|+|+|.=|- | |.+.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 346789999999999999985 577899999999999998651 1 22210
Q ss_pred --------C--Cc----------------------------------cchHHHHHHHHHHhcCCCcE--EEecCCCCHHH
Q 017434 264 --------D--YV----------------------------------PATVMALEEVVQAAKGRVPV--FLDGGVRRGTD 297 (371)
Q Consensus 264 --------~--~~----------------------------------~~~~~~l~~i~~~~~~~i~v--ia~GGI~~~~d 297 (371)
. .| ..+++.+.++++. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 00 0122333333332 35665 79999999999
Q ss_pred HHHHHHcCCCEEEEchhHHH
Q 017434 298 VFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~~l~ 317 (371)
+.-.+.+|||+|++|+-++.
T Consensus 223 AALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHhCCCeEEecccccC
Confidence 99999999999999997764
No 192
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.74 E-value=0.00045 Score=62.17 Aligned_cols=80 Identities=25% Similarity=0.209 Sum_probs=61.2
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCcC-CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGARQ-LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~~-~~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+-+.+++..+.+.|+|+|.++.-..+. ... .+..++.+.++.+..+ ++||++.||| +.+++.+++.+|+++|.+|
T Consensus 103 ~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~~ 180 (196)
T TIGR00693 103 THNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAVV 180 (196)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEEh
Confidence 467888889999999999987532221 111 2225677777776543 5999999999 5899999999999999999
Q ss_pred hhHHH
Q 017434 313 RPVPF 317 (371)
Q Consensus 313 r~~l~ 317 (371)
+.++.
T Consensus 181 ~~i~~ 185 (196)
T TIGR00693 181 SAIMQ 185 (196)
T ss_pred HHhhC
Confidence 98863
No 193
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.73 E-value=0.00057 Score=67.15 Aligned_cols=94 Identities=22% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcC-CC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 221 KWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQ-LD-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
...|+..+-..++.. +-+.+++..+.+.|+|+|.++....+. .. ..+..++.+..+++.. ++||++-|||. .++
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~n 307 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KSN 307 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHH
Confidence 444554432223333 467899999999999999997543321 11 1244567777777765 79999999996 899
Q ss_pred HHHHHHcCCCEEEEchhHHH
Q 017434 298 VFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~~l~ 317 (371)
+.+.+.+||++|.+++.++.
T Consensus 308 i~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 308 IPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHcCCcEEEEeHHHhC
Confidence 99999999999999999874
No 194
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.0027 Score=58.03 Aligned_cols=153 Identities=22% Similarity=0.271 Sum_probs=99.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|.....+.+++.+++|++.+=+.| . -+ .++ .+-.
T Consensus 12 saD~~~l~~el~~~~~agad~iH~DV----M--------Dg-----------------------------hFV---PNiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLIHIDV----M--------DG-----------------------------HFV---PNIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEEEEec----c--------CC-----------------------------CcC---CCcc
Confidence 46788888999999999999874432 0 00 000 0122
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHH-HHHHHHhCCCEEEEeCC---------------CC---------cC------
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GA---------RQ------ 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~-a~~a~~~Gad~I~vs~~---------------gg---------~~------ 262 (371)
+-...++++|+.++.|+-|=. +.+++. +....++|||.|+++-- |- +.
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 345778999998888888775 455654 67888999999999631 10 10
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHhcC--CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhc
Q 017434 263 ----LD-----------YV----PATVMALEEVVQAAKG--RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAV 321 (371)
Q Consensus 263 ----~~-----------~~----~~~~~~l~~i~~~~~~--~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~ 321 (371)
.| +| +..++-+.++++.... ++-|-+||||. .+.+-++.++|||.+..|| .+|+
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGS-alF~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGS-ALFG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEE-EEeC---
Confidence 01 22 2345556666665532 56799999997 6778888889999999999 4443
Q ss_pred CChHHHHHHHHHHHHHH
Q 017434 322 DGEAGVRKVLQMLRDEF 338 (371)
Q Consensus 322 ~G~~gv~~~l~~l~~el 338 (371)
+.+ ....++.++.++
T Consensus 203 -~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 203 -ADD-YKATIRELRGEL 217 (220)
T ss_pred -Ccc-HHHHHHHHHHHh
Confidence 222 444555555543
No 195
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.72 E-value=0.0049 Score=57.01 Aligned_cols=153 Identities=20% Similarity=0.242 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|...+.+.+++++++|++.+ ++|.=- | .++ .+-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDimD----------G-----------------------------~FV---PN~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDVMD----------N-----------------------------HYV---PNLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEeccc----------C-----------------------------ccC---CCcc
Confidence 4677788899999999999876 444200 0 011 0123
Q ss_pred CCHHHHHHHHhh-cCCCEEEEE-ccCHHH-HHHHHHhCCCEEEEeCC---------------CCc---------C-----
Q 017434 215 LNWKDVKWLQTI-TSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GAR---------Q----- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~-~~~pv~vK~-v~~~e~-a~~a~~~Gad~I~vs~~---------------gg~---------~----- 262 (371)
|..+.++++|+. ++.|+=+=. +.+++. ++...++|+|.|+++-- |-+ .
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 456788999987 578876654 345654 67788899999998521 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 263 -----LD-----------YV----PATVMALEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 263 -----~~-----------~~----~~~~~~l~~i~~~~~~---~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
.| +| +..++-+.++++.... ++.|-+||||. .+.+.+..++|||.+.+||.+ |+
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSai-F~- 204 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAI-FN- 204 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhh-hC-
Confidence 01 12 2244455555554321 47799999998 788888889999999999985 43
Q ss_pred hcCChHHHHHHHHHHHHHH
Q 017434 320 AVDGEAGVRKVLQMLRDEF 338 (371)
Q Consensus 320 ~~~G~~gv~~~l~~l~~el 338 (371)
.+...+.++.+++.+
T Consensus 205 ----~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 205 ----APDYAQVIAQMRAAV 219 (223)
T ss_pred ----CCCHHHHHHHHHHHH
Confidence 122445566666543
No 196
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.71 E-value=0.016 Score=55.80 Aligned_cols=79 Identities=24% Similarity=0.383 Sum_probs=63.3
Q ss_pred cCHHHHHHHHHhCCCEEEEe--C-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC--CCCHHHHHHHHHcCCCEEEE
Q 017434 237 LTAEDASLAIQYGAAGIIVS--N-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG--VRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG--I~~~~dv~kal~lGAd~V~i 311 (371)
.++++|+.+.+.|+|+|-++ + ||-+.-....-.++.|.++++.+. ++|+++=|| |. .+++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIP-DDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCC-HHHHHHHHHcCCCEEEE
Confidence 47899999999999999998 3 554321112346788999998873 499999998 86 78999999999999999
Q ss_pred chhHHH
Q 017434 312 GRPVPF 317 (371)
Q Consensus 312 Gr~~l~ 317 (371)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 197
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.71 E-value=0.00043 Score=65.95 Aligned_cols=87 Identities=17% Similarity=0.229 Sum_probs=65.9
Q ss_pred HHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 219 DVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 219 ~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
-++.+|+..+ .+|. -.+-+.+++..+.++|+|+|.+.|- +.+.+.++.+..++++|+.++|||. .++
T Consensus 179 av~~~r~~~~~~~I~-VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGIt-~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVE-VEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGIN-EST 246 (277)
T ss_pred HHHHHHHhCCCCeEE-EEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCCC-HHH
Confidence 3667776542 2322 2347899999999999999988642 3455666666554589999999995 999
Q ss_pred HHHHHHcCCCEEEEchhHHH
Q 017434 298 VFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~~l~ 317 (371)
+.++.++|+|.+.+|.+...
T Consensus 247 i~~~a~tGvD~Isvg~lt~s 266 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTKD 266 (277)
T ss_pred HHHHHHcCCCEEEEChhhcC
Confidence 99999999999999997653
No 198
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.70 E-value=0.00048 Score=65.98 Aligned_cols=89 Identities=18% Similarity=0.242 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCCCE-EEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCCCcEEEecCCC
Q 017434 218 KDVKWLQTITSLPI-LVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 293 (371)
Q Consensus 218 ~~i~~ir~~~~~pv-~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 293 (371)
+.++.+|+..+... +--.+.+.+++..+.++|+|+|.+.|-+ + +.+.++.+.+ ..++++.++|||
T Consensus 184 ~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~-------~---e~l~~av~~~~~~~~~i~leAsGGI- 252 (288)
T PRK07428 184 EAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP-------V---DLMQQAVQLIRQQNPRVKIEASGNI- 252 (288)
T ss_pred HHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHHhcCCCeEEEEECCC-
Confidence 55788888765222 2223578999999999999999997632 2 3344443332 357999999999
Q ss_pred CHHHHHHHHHcCCCEEEEchhHHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.+++.++.++|+|.+.+|+++..
T Consensus 253 t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 253 TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred CHHHHHHHHHcCCCEEEEchhhhC
Confidence 599999999999999999997763
No 199
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.69 E-value=0.01 Score=54.76 Aligned_cols=173 Identities=17% Similarity=0.108 Sum_probs=112.1
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC-------CCH----HHHhccCC--CceEEEEeecCChHHHHHHHHHHH-HcCCcEEE
Q 017434 92 GECATARAASAAGTIMTLSSWAT-------SSV----EEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAE-RAGFKAIA 157 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~-------~~~----eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~-~aG~~al~ 157 (371)
.|+.-.+.+.+.|..-.++|..+ ... .++++..+ .+..+|++. .|.+.+.+..++.. ..| +.++
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~~-~~~~~mi~eA~~l~~~~~-~nv~ 85 (222)
T PRK12656 8 LNLEAIKKWHEILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVA-QDYEGILKDAHEIRRQCG-DDVY 85 (222)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEEE-CCHHHHHHHHHHHHHHhC-CCEE
Confidence 36677777888888777877522 122 34444443 478899875 56665555555543 334 2233
Q ss_pred EecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEcc
Q 017434 158 LTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVL 237 (371)
Q Consensus 158 vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~ 237 (371)
|-+ |. +. --.+.++.+.+. ++++.+=.+.
T Consensus 86 VKI------------------P~--T~------------------------------~Gl~Ai~~L~~~-Gi~vn~T~if 114 (222)
T PRK12656 86 IKV------------------PV--TP------------------------------AGLAAIKTLKAE-GYHITATAIY 114 (222)
T ss_pred EEe------------------CC--CH------------------------------HHHHHHHHHHHC-CCceEEeeeC
Confidence 211 20 00 012345555544 7899888899
Q ss_pred CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 238 TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 238 ~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
+++.+..+.++|+++|.. .-||-.+.|......+.++.+.+ ..+..|++. .+|+..++.++..+|||.+-+.-.
T Consensus 115 s~~Qa~~Aa~aGa~yvsP--yvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaA-S~r~~~~v~~a~~~G~d~vTvp~~ 191 (222)
T PRK12656 115 TVFQGLLAIEAGADYLAP--YYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAA-SFKNVAQVNKAFALGAQAVTAGPD 191 (222)
T ss_pred CHHHHHHHHHCCCCEEec--ccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEE-ecCCHHHHHHHHHcCCCEEecCHH
Confidence 999999999999998876 33443344444455566655544 235566665 499999999999999999999998
Q ss_pred HHHhhh
Q 017434 315 VPFSLA 320 (371)
Q Consensus 315 ~l~~~~ 320 (371)
++..+.
T Consensus 192 vl~~l~ 197 (222)
T PRK12656 192 VFEAAF 197 (222)
T ss_pred HHHHHh
Confidence 887653
No 200
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.68 E-value=0.01 Score=54.69 Aligned_cols=170 Identities=14% Similarity=0.145 Sum_probs=112.0
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC------CC----HHHHhccCC--CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017434 92 GECATARAASAAGTIMTLSSWAT------SS----VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~------~~----~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vt 159 (371)
.|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|+.. .|.+.+.+..++..+.+.. ++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~~-~d~e~mi~ea~~l~~~~~n-i~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVMA-TTAEGMVNDARKLRSIIAD-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-EEEE
Confidence 46777788888888878877532 22 334554443 477889874 5666555555555444432 3321
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC---HHHHHHHHhhcCCCEEEEEc
Q 017434 160 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN---WKDVKWLQTITSLPILVKGV 236 (371)
Q Consensus 160 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ir~~~~~pv~vK~v 236 (371)
+ | .+ .+.++.+++. ++++.+=.+
T Consensus 86 I------------------P-----------------------------------~T~~Gl~A~~~L~~~-GI~vn~T~v 111 (220)
T PRK12653 86 V------------------P-----------------------------------VTAEGLAAIKMLKAE-GIPTLGTAV 111 (220)
T ss_pred e------------------C-----------------------------------CCHHHHHHHHHHHHc-CCCeeEEEe
Confidence 1 2 12 2345555544 789888889
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.+++.+..+..+|+++|... -||-.+.+...+..+.++.+.+. .+..|++ ..+++..++.+++.+|+|.+-+.-
T Consensus 112 fs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 112 YGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred cCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCH
Confidence 99999999999999998763 33433344445555555555442 2455555 459999999999999999999999
Q ss_pred hHHHhhh
Q 017434 314 PVPFSLA 320 (371)
Q Consensus 314 ~~l~~~~ 320 (371)
.++..+.
T Consensus 189 ~vl~~l~ 195 (220)
T PRK12653 189 DVAQQMI 195 (220)
T ss_pred HHHHHHH
Confidence 8887764
No 201
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.68 E-value=0.01 Score=54.69 Aligned_cols=183 Identities=17% Similarity=0.137 Sum_probs=117.2
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC------CC----HHHHhccCC--CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017434 92 GECATARAASAAGTIMTLSSWAT------SS----VEEVSSTGP--GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~------~~----~eei~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vt 159 (371)
.|+.-.+.+.+.|..-.++|..+ .+ +.++++..+ ++..+|++. .|.+.+.+-.++..+.+-+ ++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~qv~~-~d~e~mi~eA~~l~~~~~n-v~IK 85 (220)
T PRK12655 8 ANVAEVERLARIFPIAGVTTNPSIIAASKESIWEVLPRLQKAIGGEGILFAQTMS-RDAQGMVEEAKRLRNAIPG-IVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCCEEEEEee-CCHHHHHHHHHHHHHhCCC-EEEE
Confidence 46677777888887777776532 12 345555443 567789875 5666655555555544432 3332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC---HHHHHHHHhhcCCCEEEEEc
Q 017434 160 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN---WKDVKWLQTITSLPILVKGV 236 (371)
Q Consensus 160 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ir~~~~~pv~vK~v 236 (371)
+ | .+ .+.++.+.+. ++++.+=.+
T Consensus 86 I------------------P-----------------------------------~T~~Gl~Ai~~L~~~-GI~vn~T~v 111 (220)
T PRK12655 86 I------------------P-----------------------------------VTAEGLAAIKKLKKE-GIPTLGTAV 111 (220)
T ss_pred e------------------C-----------------------------------CCHHHHHHHHHHHHC-CCceeEeEe
Confidence 1 2 11 2345555543 788888889
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.+++.+..+..+|+++|... -||-.+.|......+.++.+.+. .+..|++ ..+++..++.+++.+|||.+-+.-
T Consensus 112 fs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12655 112 YSAAQGLLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPL 188 (220)
T ss_pred cCHHHHHHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCH
Confidence 99999999999999988763 33333344445566666655442 2455665 459999999999999999999999
Q ss_pred hHHHhhhcCC--hHHHHHHHHH
Q 017434 314 PVPFSLAVDG--EAGVRKVLQM 333 (371)
Q Consensus 314 ~~l~~~~~~G--~~gv~~~l~~ 333 (371)
.++..+...- ..+++.+.+.
T Consensus 189 ~vl~~l~~~p~t~~~~~~F~~d 210 (220)
T PRK12655 189 DVAQQMLNTPAVESAIEKFEQD 210 (220)
T ss_pred HHHHHHHcCCChHHHHHHHHHH
Confidence 8887764321 3455544443
No 202
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.67 E-value=0.001 Score=60.82 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=71.3
Q ss_pred HHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCCCCcC--CCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 220 VKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQ--LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+...++..+-..++... -+.|++..+.+.|+|+|.++.-..+. .+..+..++.+..+++.. .+|+++-|||. .+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 34444545444455543 57899999999999999987544332 122344677788787765 69999999997 89
Q ss_pred HHHHHHHcCCCEEEEchhHHH
Q 017434 297 DVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+...++.||++|.+-|.++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999875
No 203
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.66 E-value=0.00042 Score=64.51 Aligned_cols=99 Identities=19% Similarity=0.124 Sum_probs=70.4
Q ss_pred HHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCC---------------CC-c---CCC------------
Q 017434 217 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH---------------GA-R---QLD------------ 264 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~---------------gg-~---~~~------------ 264 (371)
.+.++++.+....|+.+.+ +.+.++++.+.+.|++.|+++.. |+ + .+|
T Consensus 62 ~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw 141 (232)
T PRK13586 62 EMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGW 141 (232)
T ss_pred HHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCC
Confidence 4778888775445998886 57889999999999999988521 11 0 000
Q ss_pred ------------------------------C--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 265 ------------------------------Y--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 265 ------------------------------~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+ ..+.++.+..+.+. ..|++++|||++.+|+.++..+|+++|.+|
T Consensus 142 ~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gvivg 218 (232)
T PRK13586 142 KEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIVG 218 (232)
T ss_pred eeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEEe
Confidence 0 01234444444332 346999999999999999999999999999
Q ss_pred hhHHHh
Q 017434 313 RPVPFS 318 (371)
Q Consensus 313 r~~l~~ 318 (371)
++++.+
T Consensus 219 ~Aly~g 224 (232)
T PRK13586 219 MAFYLG 224 (232)
T ss_pred hhhhcC
Confidence 998743
No 204
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.65 E-value=0.00041 Score=66.88 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=66.3
Q ss_pred HHHHHhhc--CCCEEEEEccCHHHHHHHHHhCCCEEEE-eCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 220 VKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIV-SNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 220 i~~ir~~~--~~pv~vK~v~~~e~a~~a~~~Gad~I~v-s~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
++..+..+ ++-+++=...++..++++.++|+-+|.- ..-=|+ ..+....+.+..+.+.. ++||+.++||.+++
T Consensus 187 v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~s 262 (326)
T PRK11840 187 LKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTAS 262 (326)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHH
Confidence 44444332 3333333457899999999999955543 110011 12344667777777764 79999999999999
Q ss_pred HHHHHHHcCCCEEEEchhHHH
Q 017434 297 DVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l~ 317 (371)
|+.+++++|||+|++.+.+..
T Consensus 263 da~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 263 DAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHHHcCCCEEEEcceecc
Confidence 999999999999999998763
No 205
>PRK01362 putative translaldolase; Provisional
Probab=97.64 E-value=0.018 Score=52.99 Aligned_cols=173 Identities=17% Similarity=0.138 Sum_probs=113.5
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC------CCH----HHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 017434 92 GECATARAASAAGTIMTLSSWAT------SSV----EEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD 161 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~------~~~----eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd 161 (371)
.|+.-.+.+.+.|..-.++|..+ ... .++.+..+++..+|+.. .|.+.+.+..++..+.+- .++|-+
T Consensus 8 A~~~ei~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~i~g~vs~qv~~-~d~~~m~~~a~~l~~~~~-~i~iKI- 84 (214)
T PRK01362 8 ANVEEIKEANELGVLDGVTTNPSLIAKEGRDFEEVIKEICSIVDGPVSAEVIA-LDAEGMIKEGRELAKIAP-NVVVKI- 84 (214)
T ss_pred CCHHHHHHHHhCCCcceEcCCHHHHHhcCCCHHHHHHHHHHhcCCCEEEEEee-CCHHHHHHHHHHHHHhCC-CEEEEe-
Confidence 35666677777777666666421 222 34444555778889874 566665555555554442 233321
Q ss_pred CCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCHHH
Q 017434 162 TPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAED 241 (371)
Q Consensus 162 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~e~ 241 (371)
|. +. --.+.++.+.+. ++++.+=.+.+.+.
T Consensus 85 -----------------P~--T~------------------------------~G~~a~~~L~~~-Gi~v~~T~vfs~~Q 114 (214)
T PRK01362 85 -----------------PM--TP------------------------------EGLKAVKALSKE-GIKTNVTLIFSANQ 114 (214)
T ss_pred -----------------CC--CH------------------------------HHHHHHHHHHHC-CCceEEeeecCHHH
Confidence 20 00 002345555543 88988888999999
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc--C-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK--G-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+..+.++|+++|.. .-||-.+.+...+..+.++.+.+. + +..|++ ..+|+..++.++..+|||.+-+.-.++..
T Consensus 115 a~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~~~~v~~~~~~G~d~iTi~~~vl~~ 191 (214)
T PRK01362 115 ALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRHPMHVLEAALAGADIATIPYKVIKQ 191 (214)
T ss_pred HHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCCHHHHHHHHHcCCCEEecCHHHHHH
Confidence 99999999998876 334544556666777777766553 2 444554 56999999999999999999999888876
Q ss_pred hh
Q 017434 319 LA 320 (371)
Q Consensus 319 ~~ 320 (371)
+.
T Consensus 192 l~ 193 (214)
T PRK01362 192 LF 193 (214)
T ss_pred HH
Confidence 64
No 206
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.63 E-value=0.00034 Score=65.90 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred CHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeC-------------------CC--------------C--
Q 017434 216 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-------------------HG--------------A-- 260 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~-------------------~g--------------g-- 260 (371)
..+.++.+++ +++||-+.|....++++.++++||+.|++++ +| |
T Consensus 72 n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~ 150 (262)
T PLN02446 72 LAAALEALRA-YPGGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRY 150 (262)
T ss_pred cHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCE
Confidence 3577888888 8899999875445889999999999998852 11 1
Q ss_pred cC----------------------------------CCC--ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHc
Q 017434 261 RQ----------------------------------LDY--VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALAL 304 (371)
Q Consensus 261 ~~----------------------------------~~~--~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~l 304 (371)
+. .|+ ..+.++.+.++.+.. ++|||++|||++.+|+.+...+
T Consensus 151 ~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~ 228 (262)
T PLN02446 151 YVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVA 228 (262)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHc
Confidence 00 011 123566677777665 7999999999999999999887
Q ss_pred --CCCEEEEchhHH
Q 017434 305 --GASGVFVGRPVP 316 (371)
Q Consensus 305 --GAd~V~iGr~~l 316 (371)
|..+|.+|+++.
T Consensus 229 g~g~~gvIvGkAl~ 242 (262)
T PLN02446 229 GGGRVDVTVGSALD 242 (262)
T ss_pred CCCCEEEEEEeeHH
Confidence 578999999983
No 207
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.62 E-value=0.0033 Score=59.94 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHh---hhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADI---KNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 217 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (371)
+.++++.+++.+.++.++..-...+|.|.-+. +.|-+.|.++..... +.. ..+ ++.. . . ..
T Consensus 107 T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~--vLi------kdn----Hi~~-~--~-i~ 170 (278)
T PRK08385 107 TRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDA--ILI------KDN----HLAL-V--P-LE 170 (278)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCccc--EEE------ccC----HHHH-H--H-HH
Confidence 45666666667888877766666677666432 222122222211100 000 000 0000 0 0 12
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh-----cCCCcEEEecC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFLDGG 291 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~via~GG 291 (371)
+.++.+|+... .+|. =.+.+.+++..+.++|+|.|.+.|- +.+.+.++.+.+ ++++.+.++||
T Consensus 171 ~av~~~r~~~~~~kIe-VEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVVE-VEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcEE-EEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 44777777653 4433 3457999999999999999988774 233444444433 24688999999
Q ss_pred CCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 292 VRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
| +.+.+.++..+|+|.+.+|.+..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 69999999999999999999765
No 208
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.62 E-value=0.00063 Score=64.66 Aligned_cols=88 Identities=24% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
..++.+|+..+ -..+.--+-+.++++.+.++|+|+|.+.+- ..+.+.++.+..+.++|+.++|||. .+
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI~-~~ 238 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGIT-LE 238 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCCC-HH
Confidence 34788888764 222323357889999999999999999653 2466777766654469999999995 99
Q ss_pred HHHHHHHcCCCEEEEchhHH
Q 017434 297 DVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l 316 (371)
++.++.+.|+|.+.+|++..
T Consensus 239 ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 239 NIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHcCCCEEEEEeeec
Confidence 99999999999999999765
No 209
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.62 E-value=0.0078 Score=54.62 Aligned_cols=96 Identities=22% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCCCEEEEEc-cCHHH--HHHHHHhCCCEEEEeCCCCcCC--CCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 217 WKDVKWLQTITSLPILVKGV-LTAED--ASLAIQYGAAGIIVSNHGARQL--DYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v-~~~e~--a~~a~~~Gad~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
.+.++.+++..+.+++.... .+..+ ...+...|+|++.+.+...... .+.+..|+.+.++. . ++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~--~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--S--RKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--c--CCCEEEECC
Confidence 35577777776777663222 23323 2355668999998865321111 12344677777665 2 689999999
Q ss_pred CCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 292 VRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 292 I~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
| +++++.+++..| +++|-+.+.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 799999999999 999999998753
No 210
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.60 E-value=0.00092 Score=63.44 Aligned_cols=88 Identities=25% Similarity=0.229 Sum_probs=67.0
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
..++.+|+..+ ...+---+-+.++++.+.++|+|+|.+.+- ..+.++++.+.++..+|+.++|||. .+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI~-~~ 234 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGIT-LD 234 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCCC-HH
Confidence 34788888764 223333457899999999999999998653 2355666666554459999999995 99
Q ss_pred HHHHHHHcCCCEEEEchhHH
Q 017434 297 DVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l 316 (371)
++.++.+.|+|.+.+|....
T Consensus 235 ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 235 NLEEYAETGVDVISSGALTH 254 (265)
T ss_pred HHHHHHHcCCCEEEeCHHHc
Confidence 99999999999999976543
No 211
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.59 E-value=0.00088 Score=63.73 Aligned_cols=88 Identities=25% Similarity=0.245 Sum_probs=65.9
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcC--CCcEEEecCCCC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG--RVPVFLDGGVRR 294 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~i~via~GGI~~ 294 (371)
..++.+|+..+ ...+.-.+.+.+++..+.++|+|+|.+.+-. .+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 34788888774 2233334578999999999999999996631 2444544444433 78999999997
Q ss_pred HHHHHHHHHcCCCEEEEchhHH
Q 017434 295 GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+++.++.+.|||++.+|..+.
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 238 LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHHc
Confidence 8999999999999999986553
No 212
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.56 E-value=0.00049 Score=71.44 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH-cCCCEEEEchhHHHh
Q 017434 269 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA-LGASGVFVGRPVPFS 318 (371)
Q Consensus 269 ~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~-lGAd~V~iGr~~l~~ 318 (371)
.++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++-|.|.
T Consensus 470 d~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 470 DIELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 345556666665 799999999999999999998 679999999988874
No 213
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.55 E-value=0.0008 Score=62.68 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.++.+.+.|++.+.+-...+. .......+..+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 35678888999999988543211 112345677888888876 7999999999999999999999999999999765
No 214
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.53 E-value=0.0011 Score=63.30 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=68.0
Q ss_pred HHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+.++.+|+..+-..++.. +.+.++++.+.+.|+|+|.+.+ -..+.+.++.+.++.++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 457888887753322332 4788999999999999998853 2336677776665446889999999 599
Q ss_pred HHHHHHHcCCCEEEEchhHH
Q 017434 297 DVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l 316 (371)
++.++.+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999999765
No 215
>PRK12376 putative translaldolase; Provisional
Probab=97.53 E-value=0.025 Score=52.71 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=113.8
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC-------CCHH----HHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017434 92 GECATARAASAAGTIMTLSSWAT-------SSVE----EVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~-------~~~e----ei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vt 159 (371)
.|+.-.+.+.+.|..-.++|..+ ...+ ++++..+ ++..+|++. .|.+.+.+..++..+.+-+ ++|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~mv~eA~~l~~~~~n-v~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVFA-DDLETMEKEAEKIASLGEN-VYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEec-CCHHHHHHHHHHHHHhCCC-eEEE
Confidence 46777888888888888877532 1333 3444454 578889864 6666655555555555433 3332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH
Q 017434 160 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 239 (371)
Q Consensus 160 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~ 239 (371)
+ |. +.. +...-.+.++.+.+. ++++.+=.+.++
T Consensus 91 I------------------P~--T~~--------------------------~G~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I------------------PI--TNT--------------------------KGESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E------------------CC--cCc--------------------------cchhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 2 20 000 000013446666554 889988889999
Q ss_pred HHHHHHHHh----CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 240 EDASLAIQY----GAAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 240 e~a~~a~~~----Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
..+..+.++ |+++|... -||-.|.+......+.++.+.+. .+..|++.+ ||+..++.+++.+|||.|-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSVF--AGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCH
Confidence 998766555 68888763 34544555556666666665542 256677754 9999999999999999999998
Q ss_pred hHHHhhh
Q 017434 314 PVPFSLA 320 (371)
Q Consensus 314 ~~l~~~~ 320 (371)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T PRK12376 201 DVLKKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8877654
No 216
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.52 E-value=0.0013 Score=62.11 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=61.5
Q ss_pred HHHHHhhcCCCEEEEEc--------cCHH---H-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 220 VKWLQTITSLPILVKGV--------LTAE---D-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v--------~~~e---~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
+..+...+++|+++... .+.+ . ++.+.++|+|+|.++.. ..++.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 44444556889887432 1222 2 46778999999998521 2466777777655 79999
Q ss_pred EecCCC--CHHHH----HHHHHcCCCEEEEchhHHH
Q 017434 288 LDGGVR--RGTDV----FKALALGASGVFVGRPVPF 317 (371)
Q Consensus 288 a~GGI~--~~~dv----~kal~lGAd~V~iGr~~l~ 317 (371)
+.|||+ +.+++ .+++++||+++.+||.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 64544 4555899999999998874
No 217
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.51 E-value=0.0011 Score=61.44 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+-++...+.|++.|.+..-.+ ........++.+.++.+.+ ++||+++|||++.+|+.+++..|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 457777889999998865422 1113356778888888877 78999999999999999999999999999998763
No 218
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.51 E-value=0.0039 Score=58.45 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=97.6
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEec--CC-------CCC----C--------H---HHHhccCC-CceE
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS--SW-------ATS----S--------V---EEVSSTGP-GIRF 129 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s--~~-------~~~----~--------~---eei~~~~~-~~~~ 129 (371)
.||+-+..| .+ -.|+.+.+.|+.+++. +. +|. + + +||....+ .|.+
T Consensus 15 ~pIig~gaG-tG--------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAG-TG--------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEES-SH--------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeec-cc--------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 577666643 33 5899999999988863 11 110 0 1 34444444 6788
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhh
Q 017434 130 FQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVAN 209 (371)
Q Consensus 130 ~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (371)
+=+......-.+..++++.++.||..+. +-|..|--.-..|+.+ .
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~---NfPTvgliDG~fR~~L-------------------------------E- 130 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ---NFPTVGLIDGQFRQNL-------------------------------E- 130 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE---E-S-GGG--HHHHHHH-------------------------------H-
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE---ECCcceeeccHHHHHH-------------------------------H-
Confidence 8887654445788899999999999874 3455432111111110 0
Q ss_pred hcccCCCH-HHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeC---CCCcC-CCCccc---hHHHHHHHHHHh
Q 017434 210 QIDRSLNW-KDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSN---HGARQ-LDYVPA---TVMALEEVVQAA 280 (371)
Q Consensus 210 ~~~~~~~~-~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~---~gg~~-~~~~~~---~~~~l~~i~~~~ 280 (371)
...+.. .+++.|+... ..-+.+.-+.++++|+.+.++|+|.|+++- .||.. .....+ ..+.+.++.++.
T Consensus 131 --e~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 131 --ETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp --HTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred --hcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 011111 2344444433 123444456899999999999999999953 23321 112222 222334444433
Q ss_pred ---cCCCcEEEec-CCCCHHHHHHHHHc--CCCEEEEchhH
Q 017434 281 ---KGRVPVFLDG-GVRRGTDVFKALAL--GASGVFVGRPV 315 (371)
Q Consensus 281 ---~~~i~via~G-GI~~~~dv~kal~l--GAd~V~iGr~~ 315 (371)
++++-+++-| -|.+++|+...+.. |+++..-|+++
T Consensus 209 ~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 209 RAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 3455555555 49999999999983 58887777754
No 219
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00065 Score=62.13 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.|-|++..+.|+|-+++-.-..+ .++....++.+.++++.+ .+|+..-|||++.+|+.+.|.+|||-|.|.++-+.
T Consensus 33 VelA~~Y~e~GADElvFlDItAs-~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITAS-SEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEecccc-cccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 46789999999999987432111 112245678888888887 79999999999999999999999999999997764
No 220
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.50 E-value=0.00039 Score=65.18 Aligned_cols=69 Identities=26% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+.|+...+.|++.+.+..- +.+..+.+.++.+.+ .+||...||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 46789999999999998542 444788899998887 699999999997 9999999999999999997653
No 221
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.0008 Score=61.49 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=60.9
Q ss_pred cCHHHHHHHHHhCCCEEEEeCC-CCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 237 LTAEDASLAIQYGAAGIIVSNH-GARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
.++-.++++.+.||..|.=-+. -|+ ..|+-+...|.-+.+.. ++|||+|-||.++.|+..++++|+|+|++-+++
T Consensus 139 dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 139 DDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 4566799999999998863211 011 12455677788888877 899999999999999999999999999999987
Q ss_pred HH
Q 017434 316 PF 317 (371)
Q Consensus 316 l~ 317 (371)
-.
T Consensus 215 A~ 216 (262)
T COG2022 215 AR 216 (262)
T ss_pred hc
Confidence 54
No 222
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.47 E-value=0.01 Score=56.18 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=64.4
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..++|+.+++.+++||+-+.- ....+++.+.++|+|.|.-+.. -.|.-+.+..++..+ ++|+++ |++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r-------~rP~~~~~~~iK~~~--~~l~MA--D~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEV-------LTPADEEHHIDKHKF--KVPFVC--GARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCC-------CCcHHHHHHHHHHHc--CCcEEc--cCCC
Confidence 468899999999999997654 3478999999999999953221 012344566666655 567776 7999
Q ss_pred HHHHHHHHHcCCCEEE
Q 017434 295 GTDVFKALALGASGVF 310 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~ 310 (371)
-++++.+..+|||.|.
T Consensus 122 leEal~a~~~Gad~I~ 137 (283)
T cd04727 122 LGEALRRISEGAAMIR 137 (283)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999874
No 223
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.46 E-value=0.00063 Score=63.14 Aligned_cols=75 Identities=17% Similarity=0.298 Sum_probs=56.8
Q ss_pred CHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 238 TAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 238 ~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
++.+ ++...+. ++.+.+..--|. ..+.++.++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+..+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 4433 5555565 888877432221 123346788899988876 7999999999999999999999999999999755
No 224
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.45 E-value=0.0039 Score=59.05 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=64.9
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.++|++|++.+++||+-|.- ....+++.+.++|+|.|.-|.. -.|.-+.+..++..+ ++|+++ |+++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~-------lrPade~~~~~K~~f--~vpfma--d~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV-------LTPADWTFHIDKKKF--KVPFVC--GARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCC-------CCcHHHHHHHHHHHc--CCCEEc--cCCC
Confidence 458899999999999998874 4578999999999999964321 112344455555555 577766 8999
Q ss_pred HHHHHHHHHcCCCEEE
Q 017434 295 GTDVFKALALGASGVF 310 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~ 310 (371)
.++++.++..|||.|.
T Consensus 124 l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 124 LGEALRRINEGAAMIR 139 (287)
T ss_pred HHHHHHHHHCCCCEEe
Confidence 9999999999999774
No 225
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.44 E-value=0.0023 Score=57.10 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=57.6
Q ss_pred CHHHHHHHHhhcCCCEEEEEc------------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV------------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGR 283 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v------------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 283 (371)
..++|+.+|+.+++||+ .++ .+.++++.+.++|+|.|-+...... .. .+..+.+.++++..
T Consensus 20 ~~~dI~aik~~v~lPII-Gi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~-Rp--~~l~~li~~i~~~~--- 92 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPII-GIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRP-RP--ETLEELIREIKEKY--- 92 (192)
T ss_dssp SHHHHHHHHTTB-S-EE-EE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS--S--S-HHHHHHHHHHCT---
T ss_pred CHHHHHHHHHhcCCCEE-EEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCC-CC--cCHHHHHHHHHHhC---
Confidence 35789999999999986 332 4679999999999999999865322 11 23344566665532
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
..+++ .|.|.+|...+..+|+|.|.--
T Consensus 93 ~l~MA--Dist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 93 QLVMA--DISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp SEEEE--E-SSHHHHHHHHHTT-SEEE-T
T ss_pred cEEee--ecCCHHHHHHHHHcCCCEEEcc
Confidence 45555 6899999999999999998543
No 226
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.44 E-value=0.0018 Score=59.92 Aligned_cols=75 Identities=29% Similarity=0.363 Sum_probs=60.1
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.|+...+.|++.+.+..-.+. ..+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5577788999999998643322 123345678888888876 68999999999999999999999999999987653
No 227
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.43 E-value=0.0029 Score=57.07 Aligned_cols=36 Identities=44% Similarity=0.736 Sum_probs=31.8
Q ss_pred CCCcE--EEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 282 GRVPV--FLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 282 ~~i~v--ia~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+++|| ++.|||.|+.|+.-.+.+|+|+|++|+.++.
T Consensus 206 GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFk 243 (296)
T KOG1606|consen 206 GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 243 (296)
T ss_pred CCCceEEecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence 46776 7999999999999999999999999996654
No 228
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.43 E-value=0.00085 Score=62.53 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=60.1
Q ss_pred CH-HHHHHHHH-hCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 238 TA-EDASLAIQ-YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 238 ~~-e~a~~a~~-~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
++ +.|+...+ .|+|.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.|||||.+|+.+++.+||+.|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 45666777 69999998643221 123456788899998876 799999999999999999999999999999965
Q ss_pred H
Q 017434 316 P 316 (371)
Q Consensus 316 l 316 (371)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 4
No 229
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.42 E-value=0.021 Score=52.97 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHH-HHHHHHhCCCEEEEeCCC----------------Cc---------C-----
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNHG----------------AR---------Q----- 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~-a~~a~~~Gad~I~vs~~g----------------g~---------~----- 262 (371)
+..+.++++|+.++.|+=+=. +.+|+. ++...++|+|.|+++--. -+ .
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 345778889887777866654 355654 677888999999885211 00 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 263 -----LD-----------YV----PATVMALEEVVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 263 -----~~-----------~~----~~~~~~l~~i~~~~~~---~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
.| +| +..++-+.++++.... ++.|-+||||. .+.+.+..++|||.+.+|+..+|+.
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 12 2233444554444321 46799999998 6788899999999999998766641
Q ss_pred hcCChHHHHHHHHHHHHHHH
Q 017434 320 AVDGEAGVRKVLQMLRDEFE 339 (371)
Q Consensus 320 ~~~G~~gv~~~l~~l~~el~ 339 (371)
.+...+.++.+++.++
T Consensus 205 ----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 ----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred ----CCCHHHHHHHHHHHHH
Confidence 1123455666665444
No 230
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.41 E-value=0.0018 Score=60.82 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=69.6
Q ss_pred CHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCC-------------------CCcC-------C---CC-
Q 017434 216 NWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNH-------------------GARQ-------L---DY- 265 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~-------------------gg~~-------~---~~- 265 (371)
..+.++.+.+.+++|+.+.+....++++.++++|++.+.+++. |.-. . ++
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 5677888888889999998765569999999999999998630 1100 0 00
Q ss_pred ------------c------------------------------cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017434 266 ------------V------------------------------PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 303 (371)
Q Consensus 266 ------------~------------------------------~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~ 303 (371)
+ .+.++.+.++.+.. ++|||++||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~~--~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEWS--PIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHH
Confidence 0 12233334444433 799999999999999998855
Q ss_pred c--CCCEEEEchhHH
Q 017434 304 L--GASGVFVGRPVP 316 (371)
Q Consensus 304 l--GAd~V~iGr~~l 316 (371)
+ |...+.+|++++
T Consensus 222 ~~~g~~~aIvG~Alf 236 (253)
T TIGR02129 222 LSKGKVDLTIGSALD 236 (253)
T ss_pred hcCCCCcEEeeehHH
Confidence 5 666688898765
No 231
>PRK08005 epimerase; Validated
Probab=97.40 E-value=0.02 Score=52.47 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=87.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|...+.+.+++.+++|++.+ ++|.=- | .++ .+-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDvMD----------G-----------------------------~FV---PN~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDIED----------T-----------------------------SFI---NNIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEeccC----------C-----------------------------CcC---Cccc
Confidence 3577788889999999999876 444200 0 000 0122
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHH-HHHHHHhCCCEEEEeCC---------------CCc---------C------
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAED-ASLAIQYGAAGIIVSNH---------------GAR---------Q------ 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~-a~~a~~~Gad~I~vs~~---------------gg~---------~------ 262 (371)
+..+.++++|+.++.|+=+=. +.+|+. ++...++|+|.|+++-- |.. .
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 345678888887777766654 345654 67788889998888521 110 0
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 263 ----LD-----------YV----PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 263 ----~~-----------~~----~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.| +| +..++-+.++++... ...|-+||||. .+.+.+..++|||.+.+||.+.
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~-~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFP-AAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcc-cCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 12 123334444444432 34799999998 7888899999999999999754
No 232
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.39 E-value=0.0017 Score=57.47 Aligned_cols=89 Identities=24% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHH---HhcCCCcEEEecCCC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQ---AAKGRVPVFLDGGVR 293 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~i~via~GGI~ 293 (371)
+.++.+++..+ .+-+.=.+.+.++++.++++|+|.|.+.|. .+ +.+.++.+ ....++.|.++|||.
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 45788888763 332333457899999999999999999873 23 33444433 445579999999996
Q ss_pred CHHHHHHHHHcCCCEEEEchhHHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+++.++...|+|.+.+|+....
T Consensus 138 -~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 138 -LENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp -TTTHHHHHHTT-SEEEECHHHHS
T ss_pred -HHHHHHHHhcCCCEEEcChhhcC
Confidence 89999999999999999997654
No 233
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.38 E-value=0.016 Score=57.97 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=104.7
Q ss_pred cCcceeecccccccccCChHhHHHHHHHHHcCCcE-EecCC-----CCCCHHHHhccCC-CceEEEEeecCChHHHHHHH
Q 017434 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIM-TLSSW-----ATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLV 145 (371)
Q Consensus 73 ~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~-~~s~~-----~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~ 145 (371)
+..|.++-++-... .+.-+.+++.....+..+ =+++. ....++++++..+ .+...-|.. .|.+.+. +
T Consensus 170 ~~~p~L~vALD~~~---~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~-~Di~~~v--v 243 (391)
T PRK13307 170 WDPPYLQVALDLPD---LEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKT-LDTGNLE--A 243 (391)
T ss_pred cccceEEEecCCCC---HHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecc-cChhhHH--H
Confidence 45677776653322 222234444444332231 23321 1223456666544 356666654 4666442 6
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHh
Q 017434 146 KRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQT 225 (371)
Q Consensus 146 ~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~ 225 (371)
+.+.++|++.+.++.-.+ .....+.++.+++
T Consensus 244 ~~~a~aGAD~vTVH~ea~-------------------------------------------------~~ti~~ai~~akk 274 (391)
T PRK13307 244 RMAADATADAVVISGLAP-------------------------------------------------ISTIEKAIHEAQK 274 (391)
T ss_pred HHHHhcCCCEEEEeccCC-------------------------------------------------HHHHHHHHHHHHH
Confidence 677788998887653110 0001133455555
Q ss_pred hcCCCEEEEEc--cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH
Q 017434 226 ITSLPILVKGV--LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA 303 (371)
Q Consensus 226 ~~~~pv~vK~v--~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~ 303 (371)
. ++-+.+-.+ .++.+.......++|.|.+.. +.......+.++.+.++++. ..+++|.++|||. .+++.+++.
T Consensus 275 ~-GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~eti~~l~~ 349 (391)
T PRK13307 275 T-GIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VENVEEALK 349 (391)
T ss_pred c-CCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HHHHHHHHH
Confidence 3 555544222 244443333378999998853 11111224566677777765 3478999999998 888999999
Q ss_pred cCCCEEEEchhHH
Q 017434 304 LGASGVFVGRPVP 316 (371)
Q Consensus 304 lGAd~V~iGr~~l 316 (371)
+|||.+.+||.+.
T Consensus 350 aGADivVVGsaIf 362 (391)
T PRK13307 350 AGADILVVGRAIT 362 (391)
T ss_pred cCCCEEEEeHHHh
Confidence 9999999999865
No 234
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.37 E-value=0.0019 Score=57.62 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=58.0
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCc-CCC-CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGAR-QLD-YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~-~~~-~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+-+.++++.+.+.|+|++.++.--.+ ... ..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-|
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 46789999999999999999853222 111 2344677888888877 6999999999 59999999999999999887
Q ss_pred hH
Q 017434 314 PV 315 (371)
Q Consensus 314 ~~ 315 (371)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 53
No 235
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.37 E-value=0.033 Score=52.29 Aligned_cols=203 Identities=21% Similarity=0.229 Sum_probs=111.8
Q ss_pred ccceeecCcccCccee-ecccccccccCChHhHHHHHHHHHcCCcEEecC-CCCCCHHHHhccCCCceEEEEeecCChHH
Q 017434 63 DMTTTVLGFNISMPIM-IAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WATSSVEEVSSTGPGIRFFQLYVTKHRNV 140 (371)
Q Consensus 63 d~s~~i~G~~~~~Pi~-iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~-~~~~~~eei~~~~~~~~~~QLy~~~d~~~ 140 (371)
++-+.+.+.....+.+ ..|...- ..+-=..+|+.++++|+.+.... +... . .|.-|| .-..+-
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kpR-------t--s~~sf~---G~G~~g 67 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKPR-------T--SAASFQ---GLGLQG 67 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCCC-------C--CCcccC---CCCHHH
Confidence 3444455555554544 4555433 23333589999999999988743 2211 1 344555 223456
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
++.+.+.+++.|...+- ++-.+ +.-+.-..+ .+ -+. +.. . .....+.+
T Consensus 68 l~~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~-vd-ilq-----------------------Igs-~-~~~n~~LL 115 (250)
T PRK13397 68 IRYLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY-LD-VIQ-----------------------VGA-R-NMQNFEFL 115 (250)
T ss_pred HHHHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc-CC-EEE-----------------------ECc-c-cccCHHHH
Confidence 66777777788877543 22111 111110000 00 000 000 0 01134556
Q ss_pred HHHHhhcCCCEEEEEc--cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCc---cchHHHHHHHHHHhcCCCcEEEe--
Q 017434 221 KWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYV---PATVMALEEVVQAAKGRVPVFLD-- 289 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v--~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~i~via~-- 289 (371)
+.+.+ ++.||++|-. .++++ ++.+.+.|..-|.+--+|-+..... ...+..++.+++.. .+||+++
T Consensus 116 ~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~S 192 (250)
T PRK13397 116 KTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVS 192 (250)
T ss_pred HHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCC
Confidence 66654 5899999964 56666 4556678887676643342222111 34566777777765 6899997
Q ss_pred --cCCCC--HHHHHHHHHcCCCEEEEchhH
Q 017434 290 --GGVRR--GTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 290 --GGI~~--~~dv~kal~lGAd~V~iGr~~ 315 (371)
+|.|. ..-...|+++|||+++|-+.+
T Consensus 193 Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 193 HSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133567888999999998854
No 236
>PRK08185 hypothetical protein; Provisional
Probab=97.35 E-value=0.12 Score=49.62 Aligned_cols=109 Identities=16% Similarity=0.267 Sum_probs=75.9
Q ss_pred cCHHHHHHHHHh-CCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAIQY-GAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~~~-Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V 309 (371)
.++++|+...+. |+|.+.++. ||-+. ..+.+ .++.|.++++.+ ++|+++=||...+ +++.+++.+|..-|
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~-~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYP-KDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKI 225 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcC-CCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEE
Confidence 478999988876 999999964 43321 11122 578899999887 7999999998655 55667899999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 226 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 226 NISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred EeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 01 1223344466777778888888754
No 237
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.33 E-value=0.0024 Score=60.38 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 5578888999999998653221 112346788899998876 79999999999999999999999999999997653
No 238
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.32 E-value=0.015 Score=55.45 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=64.7
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCCCcEEEecCCC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 293 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 293 (371)
+.++.+|+..+ .+|. -.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ ..++.+.++|||.
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGIN 245 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 55888887653 3433 3457999999999999999999763 223333343333 3478899999996
Q ss_pred CHHHHHHHHHcCCCEEEEchhH
Q 017434 294 RGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~ 315 (371)
.+++.++..+|+|.+.+|.++
T Consensus 246 -~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 246 -PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred -HHHHHHHHhcCCCEEEeCcce
Confidence 899999999999999999874
No 239
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.30 E-value=0.017 Score=55.30 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=64.7
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCCCcEEEecCCC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGRVPVFLDGGVR 293 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~i~via~GGI~ 293 (371)
+.++.+|+..+ .+ +.-.+.+.++++.+.++|+|.|.+.|. +.+.+.++.+.+ .+++.+-++|||.
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI~ 246 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGIN 246 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCCC
Confidence 45788887664 33 333467999999999999999999763 233444444443 2478899999996
Q ss_pred CHHHHHHHHHcCCCEEEEchh
Q 017434 294 RGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~ 314 (371)
.+.+.++-.+|+|.+.+|.+
T Consensus 247 -~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 247 -LNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred -HHHHHHHHhcCCCEEEECcc
Confidence 89999998999999999986
No 240
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.29 E-value=0.002 Score=59.80 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=52.0
Q ss_pred hCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCC-cEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 248 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV-PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 248 ~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i-~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.|...+.+-..++. +.+.+.+.+.++++.+ +. ||+..|||++.+++.+++..|||.|.+|+.+..
T Consensus 153 ~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 153 LGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred cCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 46666666533322 4456788889998876 56 999999999999999999999999999999874
No 241
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.28 E-value=0.043 Score=52.52 Aligned_cols=107 Identities=14% Similarity=0.191 Sum_probs=75.2
Q ss_pred cCHHHHHHH-HHhCCCEEEEeC---CCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEEE
Q 017434 237 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGVF 310 (371)
Q Consensus 237 ~~~e~a~~a-~~~Gad~I~vs~---~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V~ 310 (371)
.+|+++.+. .+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 467887665 479999999875 5543 2322 468899999887 7999999976666 677789999999999
Q ss_pred EchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 311 VGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 311 iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
++|-+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543210 01 0113334466777888888888754
No 242
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.28 E-value=0.018 Score=52.57 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCC-CCcCC-CCccchHHHHHHHHHHhcC---CCcEEEecCC
Q 017434 219 DVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNH-GARQL-DYVPATVMALEEVVQAAKG---RVPVFLDGGV 292 (371)
Q Consensus 219 ~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~-gg~~~-~~~~~~~~~l~~i~~~~~~---~i~via~GGI 292 (371)
.++.+++. ++.+.+-.. .+..+..+....++|+|.+... .|.+. ...+...+.+.++++..+. ..+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 35555543 444333221 2333333344456898877542 22211 1122234445555554421 1447799999
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+. +++.+++..|+|.|.+||+++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 97 8999999899999999999873
No 243
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.27 E-value=0.0015 Score=60.82 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.|+...+.|+|.+.+..-.+. .+.......+.++.+.+ .+|+.+.|||++.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 35678888999999998653322 13456788888888876 6899999999999999999999999999999654
No 244
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.25 E-value=0.0015 Score=60.68 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=57.1
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.|+...+.|++.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 4567777899999988532111 123356778899998887 59999999999999999999999999999997764
No 245
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.22 E-value=0.0042 Score=59.40 Aligned_cols=87 Identities=20% Similarity=0.177 Sum_probs=68.6
Q ss_pred HHHHHHHhhcC--CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 218 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 218 ~~i~~ir~~~~--~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
+.++.+|+..+ .+|.| .+.+.|+++.+.++|+|.|.+.|- +.+.+.++.+.+++++.+.++|||. .
T Consensus 185 ~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI~-~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNID-M 252 (290)
T ss_pred HHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCCC-H
Confidence 45788888764 33332 357899999999999999999874 3455666666655678999999996 8
Q ss_pred HHHHHHHHcCCCEEEEchhHH
Q 017434 296 TDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l 316 (371)
+.+.++..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 999999889999999999765
No 246
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.21 E-value=0.12 Score=51.18 Aligned_cols=210 Identities=20% Similarity=0.212 Sum_probs=115.3
Q ss_pred CCCCCCccceeecCcccC--cc-eeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEe
Q 017434 57 RDVSKIDMTTTVLGFNIS--MP-IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLY 133 (371)
Q Consensus 57 ~~~~~~d~s~~i~G~~~~--~P-i~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy 133 (371)
+....-|+.+.+.+..+. .| +++.|... -..+.-..+|+.+++.|+.+..... .. ....|..||
T Consensus 98 ~~~~~~~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~--~k------pRtsp~~f~-- 164 (360)
T PRK12595 98 RKKKPEDTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGA--FK------PRTSPYDFQ-- 164 (360)
T ss_pred CccCCCCCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEccc--cC------CCCCCcccc--
Confidence 333334455555444332 33 45666432 2334446889999999998887321 11 011344555
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhccc
Q 017434 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 213 (371)
Q Consensus 134 ~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (371)
.-..+....+-+.+++.|...+. ++ .. .+.-+.-..+ .+. +. +. ...
T Consensus 165 -g~~~e~l~~L~~~~~~~Gl~~~t-~v---~d-~~~~~~l~~~-vd~-lk-----------------------I~--s~~ 211 (360)
T PRK12595 165 -GLGVEGLKILKQVADEYGLAVIS-EI---VN-PADVEVALDY-VDV-IQ-----------------------IG--ARN 211 (360)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEE-ee---CC-HHHHHHHHHh-CCe-EE-----------------------EC--ccc
Confidence 33456667777778888887553 22 11 1111111111 110 00 00 001
Q ss_pred CCCHHHHHHHHhhcCCCEEEEEc--cCHHHH----HHHHHhCCCEEEEeCCCCcCCC---CccchHHHHHHHHHHhcCCC
Q 017434 214 SLNWKDVKWLQTITSLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLD---YVPATVMALEEVVQAAKGRV 284 (371)
Q Consensus 214 ~~~~~~i~~ir~~~~~pv~vK~v--~~~e~a----~~a~~~Gad~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~i 284 (371)
....+.++.+.+ ++.||++|-. .+.++. +...+.|.+-|.+--+|-+..+ .....+..++.+++.. .+
T Consensus 212 ~~n~~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~ 288 (360)
T PRK12595 212 MQNFELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HL 288 (360)
T ss_pred ccCHHHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CC
Confidence 113456666654 5899999965 477774 4455678876766543433222 1123677888888766 68
Q ss_pred cEEEecCCCCH----H--HHHHHHHcCCCEEEEchhH
Q 017434 285 PVFLDGGVRRG----T--DVFKALALGASGVFVGRPV 315 (371)
Q Consensus 285 ~via~GGI~~~----~--dv~kal~lGAd~V~iGr~~ 315 (371)
||+.|.+=..| . -...|+++|||+++|=+.+
T Consensus 289 PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 289 PVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 99996442222 2 3445788999999999866
No 247
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.19 E-value=0.0042 Score=57.80 Aligned_cols=74 Identities=22% Similarity=0.153 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.|+...+.|++.+.+-.-.+.. +.+...+.+.++.+.. ..|+...||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 55778888999999986543321 3455678888887743 25999999999999999999999999999997653
No 248
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.18 E-value=0.0049 Score=58.80 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=69.2
Q ss_pred HHHHHHHhhcC--CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 218 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 218 ~~i~~ir~~~~--~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
+.++.+|+..+ .++. -.+.+.+++..+.++|+|.|.+.|- +.+.+.++.+.++++.++-++|||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 55888888764 3443 3457999999999999999999874 3356666666666678999999996 8
Q ss_pred HHHHHHHHcCCCEEEEchhHH
Q 017434 296 TDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l 316 (371)
+.+.++-.+|+|.+.+|.+..
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 999999899999999998664
No 249
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.18 E-value=0.0027 Score=57.81 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=60.7
Q ss_pred CHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.|+++++.. ++.|....+.+.++++.+.++|+++|+ |-+ .+.+.+..+++ . ++|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SPG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CCC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 456799998877 466777778999999999999999994 321 12233333332 2 677777 9999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 017434 295 GTDVFKALALGASGVFV 311 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~i 311 (371)
+.++.+|+.+||+.|=+
T Consensus 111 ptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 111 PSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998743
No 250
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.12 E-value=0.0092 Score=54.32 Aligned_cols=137 Identities=21% Similarity=0.262 Sum_probs=84.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
..|...+.+.+++++++|++.+=+.+- - | .| .| +-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~d~lHiDiM--D-g--------~f-vp--------------------------------n~~ 43 (201)
T PF00834_consen 8 SADFLNLEEEIKRLEEAGADWLHIDIM--D-G--------HF-VP--------------------------------NLT 43 (201)
T ss_dssp GS-GGGHHHHHHHHHHTT-SEEEEEEE--B-S--------SS-SS--------------------------------SB-
T ss_pred hCCHHHHHHHHHHHHHcCCCEEEEeec--c-c--------cc-CC--------------------------------ccc
Confidence 356777888999999999987644320 0 0 00 01 112
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHH-HHHHHHHhCCCEEEEeCC---------------CCc---------C------
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAE-DASLAIQYGAAGIIVSNH---------------GAR---------Q------ 262 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e-~a~~a~~~Gad~I~vs~~---------------gg~---------~------ 262 (371)
+..+.++++|+.+++|+=+=. +.+|+ -.+...++|+|.|+++-. |.+ .
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 345778999988888877765 34554 367788899998888521 111 0
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 263 ----LD-----------YV----PATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 263 ----~~-----------~~----~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.| +| +..++-+.++++... .++.|.+||||+ .+.+.+..++|||.+.+||.+.
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHHHT--EEEESHHHH
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHHcCCCEEEECHHHh
Confidence 11 22 224444555554432 368999999998 5688888899999999998654
No 251
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.11 E-value=0.0087 Score=56.65 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=59.1
Q ss_pred HHHHHhhcCCCEEEEEc------cCHH-----HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 220 VKWLQTITSLPILVKGV------LTAE-----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v------~~~e-----~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
+..-++.|++|+++ .. .+.. -++.+.|+|||.|++.- +. +.+.++.+.. .+||+.
T Consensus 132 v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVvi 197 (264)
T PRK08227 132 LVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIVI 197 (264)
T ss_pred HHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEEE
Confidence 44555678999987 32 1111 26889999999999831 11 6677787765 799999
Q ss_pred ecCCCCH-HHH----HHHHHcCCCEEEEchhHH
Q 017434 289 DGGVRRG-TDV----FKALALGASGVFVGRPVP 316 (371)
Q Consensus 289 ~GGI~~~-~dv----~kal~lGAd~V~iGr~~l 316 (371)
.||=... +|+ ..++..||.+|.+||-+.
T Consensus 198 aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 198 AGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 9998853 334 457778999999999554
No 252
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=97.10 E-value=0.1 Score=48.59 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=115.1
Q ss_pred HhHHHHHHHHHcCCcEEecCCCC-------CCHHHHh----cc-CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017434 92 GECATARAASAAGTIMTLSSWAT-------SSVEEVS----ST-GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALT 159 (371)
Q Consensus 92 ~e~~~a~aa~~~G~~~~~s~~~~-------~~~eei~----~~-~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vt 159 (371)
.|+.-.+.+.+.|..-.++|..+ ...+++. .. .+++..+|++. .|.+.+.+..++..+.+.. ++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~~-~d~~~m~~eA~~l~~~~~n-v~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVFA-DDLDEMEKEARYIASWGNN-VNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEec-CCHHHHHHHHHHHHhcCCC-eEEE
Confidence 36777888888998888877532 1233332 22 23688999974 6666666666666556543 4432
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEEccCH
Q 017434 160 VDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTA 239 (371)
Q Consensus 160 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~v~~~ 239 (371)
+ |. +.. ......+.++.+++. ++++.+=.+.++
T Consensus 91 I------------------P~--T~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I------------------PV--TNT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E------------------CC--cCc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 2 20 000 000124556777665 788888888999
Q ss_pred HHHHHH---HHhC-CCEEEEeCCCCcCCCCccchHHHHHHHHHHhc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 240 EDASLA---IQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 240 e~a~~a---~~~G-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
..+..+ ..+| +++|... -||-.|.|......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSVF--AGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 888764 4589 6888763 34544555555666666655442 257788765 9999999999999999999998
Q ss_pred hHHHhhh
Q 017434 314 PVPFSLA 320 (371)
Q Consensus 314 ~~l~~~~ 320 (371)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T TIGR02134 201 DILAKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8877653
No 253
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.07 E-value=0.0057 Score=58.69 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=67.9
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+.++.+|+..+ .|+. -.+-+.++++.+.++|+|.|.+.|- +.+.+.++.+..++++.+.++|||. .+
T Consensus 197 ~av~~~r~~~~~~kIe-VEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPVE-VEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 45777776653 4543 3467899999999999999998773 2355666666555688999999996 88
Q ss_pred HHHHHHHcCCCEEEEchhHH
Q 017434 297 DVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l 316 (371)
.+.++-.+|+|.+.+|.+..
T Consensus 265 ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 265 TLREFAETGVDFISVGALTK 284 (296)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 99998889999999998654
No 254
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.0075 Score=57.53 Aligned_cols=87 Identities=18% Similarity=0.184 Sum_probs=68.3
Q ss_pred HHHHHHHhhcC--CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 218 KDVKWLQTITS--LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 218 ~~i~~ir~~~~--~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
+.++.+|+..+ .+|. -.+.+.+++..+.++|+|.|.+.|. +.+.+.++.+.++++..+.++|||. .
T Consensus 181 ~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI~-~ 248 (281)
T PRK06543 181 EALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNVN-L 248 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCCC-H
Confidence 45778887764 3333 3468999999999999999999874 3455566666565677899999996 8
Q ss_pred HHHHHHHHcCCCEEEEchhHH
Q 017434 296 TDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l 316 (371)
+.+.++..+|+|.+.+|.+..
T Consensus 249 ~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 249 NTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 999999889999999998654
No 255
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.01 E-value=0.01 Score=61.40 Aligned_cols=111 Identities=21% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCc-CCCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 221 KWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGAR-QLDYV-PATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~-~~~~~-~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
...|+..+-..++.. +-+.+++..+.+.|+|+|.++--..+ ..+.. +..++.+.++.+.. ++||++-|||. .++
T Consensus 381 ~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~~ 457 (502)
T PLN02898 381 RLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-ASN 457 (502)
T ss_pred HHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HHH
Confidence 445554433334443 46789999999999999997632211 11112 23567777776655 79999999996 999
Q ss_pred HHHHHHcCCC---EEEEchhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 017434 298 VFKALALGAS---GVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFEL 340 (371)
Q Consensus 298 v~kal~lGAd---~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~ 340 (371)
+.+.+++||+ +|.+++.++.. +...+.++.+++.+..
T Consensus 458 ~~~~~~~G~~~~~gvav~~~i~~~------~d~~~~~~~~~~~~~~ 497 (502)
T PLN02898 458 AASVMESGAPNLKGVAVVSALFDQ------EDVLKATRKLHAILTE 497 (502)
T ss_pred HHHHHHcCCCcCceEEEEeHHhcC------CCHHHHHHHHHHHHHH
Confidence 9999999999 99999988732 2233444555554443
No 256
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.01 E-value=0.0073 Score=57.89 Aligned_cols=87 Identities=20% Similarity=0.168 Sum_probs=65.6
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHH---hcCCCcEEEecCCC
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA---AKGRVPVFLDGGVR 293 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~i~via~GGI~ 293 (371)
+.++++|+..+ .|+. -.+.+.+++..+.++|+|.|.+.|-. .+.++++.+. ..+++.+.++|||.
T Consensus 188 ~ai~~~r~~~~~~kIe-VEv~tl~ea~eal~~gaDiI~LDnm~----------~e~vk~av~~~~~~~~~v~ieaSGGI~ 256 (289)
T PRK07896 188 AALRAVRAAAPDLPCE-VEVDSLEQLDEVLAEGAELVLLDNFP----------VWQTQEAVQRRDARAPTVLLESSGGLT 256 (289)
T ss_pred HHHHHHHHhCCCCCEE-EEcCCHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHhccCCCEEEEEECCCC
Confidence 45777877653 4543 34678999999999999999998731 2333333332 24578999999996
Q ss_pred CHHHHHHHHHcCCCEEEEchhHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.+.++-.+|+|.+.+|.+..
T Consensus 257 -~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 257 -LDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred -HHHHHHHHhcCCCEEEeChhhc
Confidence 8999999899999999999765
No 257
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.01 E-value=0.017 Score=53.03 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=60.0
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCc-CCC--CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGAR-QLD--YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~-~~~--~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+-+.+++..+.+.|+|+|.++--..+ +.. ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 35678899999999999999743222 121 1223456666666543 269999999997 899999999999999999
Q ss_pred hhHHH
Q 017434 313 RPVPF 317 (371)
Q Consensus 313 r~~l~ 317 (371)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 98874
No 258
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.00 E-value=0.005 Score=56.14 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=52.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45566789999988543332 2234577888888877 799999999999999999999999999987
No 259
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.99 E-value=0.0086 Score=57.40 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=66.2
Q ss_pred HHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+.++.+|+... .+|.| .+-+.++++.++++|+|.|.+.|- +.+.+.++.+.+++++.+-++|||. .+
T Consensus 194 ~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGIt-~~ 261 (294)
T PRK06978 194 AALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGVN-FD 261 (294)
T ss_pred HHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 34666666442 33332 357899999999999999999874 3355555655555678999999996 88
Q ss_pred HHHHHHHcCCCEEEEchhHH
Q 017434 297 DVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 297 dv~kal~lGAd~V~iGr~~l 316 (371)
.+.++-.+|+|.+.+|.+..
T Consensus 262 ni~~yA~tGVD~IS~galth 281 (294)
T PRK06978 262 TVRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHHhcCCCEEEeCcccc
Confidence 99988889999999998654
No 260
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.97 E-value=0.0049 Score=57.73 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+.|+...+.|+|.+.+-.--+. ..+.+...+.+.++.+.+ .||...||||+.+|+.+++.+||+-|.+|+..+
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 4577888899999998643221 123456788899998875 599999999999999999999999999999554
No 261
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.95 E-value=0.0076 Score=56.85 Aligned_cols=71 Identities=30% Similarity=0.193 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+.|+...+.|++.+.|..-+| +.+...+.+.++++ + .+||-.-||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4668889999999999864332 23456778888888 6 589999999996 9999999999999999997664
No 262
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.94 E-value=0.0045 Score=56.96 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=54.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
|..+...|...|.+. ..|. ..+.+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe-~SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 456677887777776 2222 245677888877653 68999999999999999999999999999998874
No 263
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.93 E-value=0.016 Score=58.36 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=66.4
Q ss_pred HHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCCCCcC-C--CCccchHHHHHHHHHHhc-------CCCcEEEec
Q 017434 222 WLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQ-L--DYVPATVMALEEVVQAAK-------GRVPVFLDG 290 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~gg~~-~--~~~~~~~~~l~~i~~~~~-------~~i~via~G 290 (371)
.+|+..+--.++... -+.+++.++.+.|+|+|.++---.+. . +..+-.++.+.++++.+. ..+||++-|
T Consensus 292 ~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIG 371 (437)
T PRK12290 292 NLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIG 371 (437)
T ss_pred hhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEEC
Confidence 344433222344443 46889999999999999986422221 1 223345666766665542 269999999
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 291 GVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 291 GI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
|| +.+++.+.++.||++|.+-|.++.
T Consensus 372 GI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 372 GI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 99 599999999999999999999874
No 264
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.88 E-value=0.0047 Score=57.15 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=44.8
Q ss_pred HhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 247 QYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 247 ~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
=.|...|.+-...|+ .++.+ ..+.++++.+ .++|+|..|||||.+++.+++..|||.|.+|+.+..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 457888888542222 12222 3444455555 379999999999999999999999999999998864
No 265
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.88 E-value=0.006 Score=57.18 Aligned_cols=72 Identities=31% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 241 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 241 ~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.++...+.|++.+.+.---+. .+.+...+.+.++.+.+ .+|+...|||||.+|+.+++.+||+-|.+|+..+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a--~g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAA--FGGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCC--CCCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 345567788888887542221 13456788899998877 6899999999999999999999999999999654
No 266
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.85 E-value=0.055 Score=50.95 Aligned_cols=70 Identities=30% Similarity=0.369 Sum_probs=55.5
Q ss_pred HHHHHH-HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 240 EDASLA-IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 240 e~a~~a-~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.++.+ ...++|+|+|++.. .+.+++.+.+.++++.+ .+||++.+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 335455 57799999998642 13467888999999988 39999999996 8999998865 999999998753
No 267
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.85 E-value=0.012 Score=54.12 Aligned_cols=81 Identities=25% Similarity=0.167 Sum_probs=60.1
Q ss_pred CHHHHHHHHhhcC----CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 216 NWKDVKWLQTITS----LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 216 ~~~~i~~ir~~~~----~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
..+.|+.+++..+ +.|-+..+.+.++++.+.++|+++|+- -+ ...+.+..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 4567999988873 445555689999999999999999963 11 1123333222 22 577776 9
Q ss_pred CCCHHHHHHHHHcCCCEEEE
Q 017434 292 VRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~i 311 (371)
+.|+.++.+++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 268
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.83 E-value=0.36 Score=46.30 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=76.1
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4788887765 58999999874 4433 3333 567899999888 7999998876666 77888999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 1223344566777788888888754
No 269
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.82 E-value=0.35 Score=46.18 Aligned_cols=107 Identities=20% Similarity=0.333 Sum_probs=73.7
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||.+. .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~--~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYK--GGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887766 47999999974 55432 1133 678899999998 7999998877666 55889999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGC 347 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~ 347 (371)
-+++-+..+... .. ..-.....+.+.+.++..|..+|.
T Consensus 224 Ni~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 224 NINTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999977554210 00 012333445566666777776664
No 270
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.82 E-value=0.01 Score=55.94 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=55.9
Q ss_pred HHHHHHHHhC-CCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 240 EDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 240 e~a~~a~~~G-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+.++.+...| +|+|+|++.+- +.+.+++.+.++++..+ ++|++..||+. ++++.+++.. ||+|.+|+.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~T----G~~~d~~~l~~vr~~~~-~~PvllggGvt-~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKTT----GTEVDLELLKLAKETVK-DTPVLAGSGVN-LENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCCC----CCCCCHHHHHHHHhccC-CCeEEEECCCC-HHHHHHHHhh-CCEEEECCCcc
Confidence 4467666666 99999987531 33568888988887553 68999999996 8999999987 99999999764
No 271
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.80 E-value=0.0084 Score=55.31 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=51.4
Q ss_pred hCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 248 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 248 ~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.|...+.+-..||. +.+-+.+.+..+++.+. ++||+..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 47777776433332 23445677888887763 69999999999999999999999999999998764
No 272
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.76 E-value=0.51 Score=45.29 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=73.7
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-~~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. .+++.|++.+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~Ki 229 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLY---SKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKV 229 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCC---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887765 57999999874 5543 2333 678899999988 799888775333 577888999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++-++..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 230 NVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 01 1123344556677777777777753
No 273
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.76 E-value=0.0098 Score=53.86 Aligned_cols=81 Identities=28% Similarity=0.271 Sum_probs=56.8
Q ss_pred CHHHHHHHHhhc-CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTIT-SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.|+.++++. ++-|.+..+.+.++++.+.++|+++++--+ -+.+.+..+.+. ++|++- |+.|
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~iP--G~~T 110 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYIP--GVMT 110 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEEE--EESS
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCcccC--CcCC
Confidence 457788888887 455666668999999999999999996421 122344444332 677776 8999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 017434 295 GTDVFKALALGASGVFV 311 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~i 311 (371)
+.++.+++.+||+.|=+
T Consensus 111 ptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 111 PTEIMQALEAGADIVKL 127 (196)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999865
No 274
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.71 E-value=0.015 Score=52.23 Aligned_cols=81 Identities=28% Similarity=0.304 Sum_probs=60.5
Q ss_pred CHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.++.+++.++ +++....+.+.+.++.+.++|+|+|...+ . ..+ +.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~~-~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DPE-VVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CHH-HHHHHHHc--CCcEEC--CcCC
Confidence 3457899998875 66666667889999999999999996421 1 112 33333333 567776 8899
Q ss_pred HHHHHHHHHcCCCEEEE
Q 017434 295 GTDVFKALALGASGVFV 311 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~i 311 (371)
.+++.+++.+|||.|.+
T Consensus 107 ~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 107 PTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999998
No 275
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.70 E-value=0.02 Score=56.00 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+.++.++++|+|.|.++.+.|.. ....+.+..+++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 55788899999999987532221 234567788877654 588888 99999999999999999999984
No 276
>PRK08999 hypothetical protein; Provisional
Probab=96.70 E-value=0.0078 Score=58.21 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=58.9
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCcC-CCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGARQ-LDYV-PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~~-~~~~-~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+-+.+++..+.+.|+|+|.++--..+. .... +..++.+.++++.. ++||++-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 357888999999999999997432221 1122 23467777777766 7999999999 79999999999999998876
Q ss_pred hH
Q 017434 314 PV 315 (371)
Q Consensus 314 ~~ 315 (371)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 54
No 277
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.70 E-value=0.067 Score=48.35 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=60.6
Q ss_pred CHHHHHHHHhhcCCCEEEEEc------------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV------------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGR 283 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v------------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 283 (371)
..++|+.+++.+++|++ .++ .+.+++..+.++|++-|.+...-.. .+.+ +++ ++.+..+ .
T Consensus 54 gv~dIkai~~~v~vPII-GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~-RP~~--~~~---~~i~~~k-~ 125 (229)
T COG3010 54 GVEDIKAIRAVVDVPII-GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRP-RPDG--DLE---ELIARIK-Y 125 (229)
T ss_pred chhhHHHHHhhCCCCeE-EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCC-CCcc--hHH---HHHHHhh-c
Confidence 35778999999999986 332 4568999999999999998764322 1122 333 3322221 2
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCEEE
Q 017434 284 VPVFLDGGVRRGTDVFKALALGASGVF 310 (371)
Q Consensus 284 i~via~GGI~~~~dv~kal~lGAd~V~ 310 (371)
-..++.-.+.|.+|.+.|..+|+|.|+
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEe
Confidence 335555678999999999999999874
No 278
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.69 E-value=0.012 Score=53.47 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=58.5
Q ss_pred CHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.|+.+++..+ +-|-+..+++.++++.+.++|+++|+- -+ -..+.+..++ .. ++|.+- |+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P~---------~~~~vi~~a~-~~--~i~~iP--G~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-PG---------TTQELLAAAN-DS--DVPLLP--GAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEeC--CCCC
Confidence 4567888888773 456666689999999999999999853 11 1223333332 22 566665 8999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 017434 295 GTDVFKALALGASGVFV 311 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~i 311 (371)
+.++..++.+||+.|=+
T Consensus 107 ptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 107 PSEVMALREEGYTVLKF 123 (201)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999998843
No 279
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.66 E-value=0.0096 Score=54.47 Aligned_cols=118 Identities=17% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCHHHHHHHHhhcCCCEEEEEc--c-CHHH-HHHHHHhCCCEEEEeCCCCcC---------------------CCC----
Q 017434 215 LNWKDVKWLQTITSLPILVKGV--L-TAED-ASLAIQYGAAGIIVSNHGARQ---------------------LDY---- 265 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v--~-~~e~-a~~a~~~Gad~I~vs~~gg~~---------------------~~~---- 265 (371)
+..+.++++|+...+|+=+|.. . +++. ++.+.++|+|.++++...|.. ...
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 3457889999877666668874 2 3333 477889999999997533210 000
Q ss_pred --------------------c----cchHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEEEEchhHHHhhh
Q 017434 266 --------------------V----PATVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 266 --------------------~----~~~~~~l~~i~~~~~~~i~via~GGI~~~~-dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
| ....+-+.++++..+.++ .+.+|||+... ++.+++..|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 0 001122223333332122 34999999753 6788888999999999986532
Q ss_pred cCChHHHHHHHHHHHHHHH
Q 017434 321 VDGEAGVRKVLQMLRDEFE 339 (371)
Q Consensus 321 ~~G~~gv~~~l~~l~~el~ 339 (371)
+ -..+.++.++++++
T Consensus 199 ---~-d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---A-DPREAAKAINEEIR 213 (215)
T ss_pred ---C-CHHHHHHHHHHHHh
Confidence 1 13455666666554
No 280
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.63 E-value=0.018 Score=52.21 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcCC-CEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 217 WKDVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 217 ~~~i~~ir~~~~~-pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
.+.+-.+.+..+. |++ .+.+.++.+++++.|+..|-|.|+.-..... .+.....+.+-.+.++-+++-+||.|+
T Consensus 175 lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeV---DlstTskL~E~i~kDvilva~SGi~tp 249 (289)
T KOG4201|consen 175 LKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEV---DLSTTSKLLEGIPKDVILVALSGIFTP 249 (289)
T ss_pred HHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeee---chhhHHHHHhhCccceEEEeccCCCCH
Confidence 3444555555544 443 3578899999999999999887753222212 222333444445567889999999999
Q ss_pred HHHHHHHHcCCCEEEEchhHHHh
Q 017434 296 TDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+|+.++-..|..+|.+|..++..
T Consensus 250 dDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 250 DDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHcCceEEEecHHHHhc
Confidence 99999999999999999999864
No 281
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.62 E-value=0.35 Score=46.78 Aligned_cols=109 Identities=15% Similarity=0.172 Sum_probs=75.7
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCHH--------------
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRGT-------------- 296 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~~-------------- 296 (371)
.+|++|.... +.|+|.+-++. ||-+... +.| .++.|.+|++.+ ++|+..=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4688887765 57999999874 4543111 333 677899999888 79999988766666
Q ss_pred --------HHHHHHHcCCCEEEEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 297 --------DVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 297 --------dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
++.|++.+|..-|-+++-+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999976543211 00 1223344556677777777777753
No 282
>PRK06852 aldolase; Validated
Probab=96.59 E-value=0.043 Score=52.98 Aligned_cols=92 Identities=23% Similarity=0.229 Sum_probs=60.1
Q ss_pred HHHHHhhcCCCEEEEEc---------cCHH----HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 220 VKWLQTITSLPILVKGV---------LTAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v---------~~~e----~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
+..-++.|++|+++-.- ..++ -++.+.++|||.|++--.+ +.+....+.+.++.+.. +++||
T Consensus 159 v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpV 233 (304)
T PRK06852 159 IIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKV 233 (304)
T ss_pred HHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcE
Confidence 33444567999886321 1122 2688999999999984321 00112346677777765 36899
Q ss_pred EEecCCCCH-HHHH----HHHH-cCCCEEEEchhHH
Q 017434 287 FLDGGVRRG-TDVF----KALA-LGASGVFVGRPVP 316 (371)
Q Consensus 287 ia~GGI~~~-~dv~----kal~-lGAd~V~iGr~~l 316 (371)
+..||=+.. +|++ .++. .||.+|.+||-+.
T Consensus 234 viaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 234 VCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999998853 3444 4666 8999999999654
No 283
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.55 E-value=0.63 Score=44.60 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=74.0
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-~~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.+++.+|..-|
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---k~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 227 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLY---KKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKV 227 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCc---CCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4678876654 69999999874 5543 3333 677899999888 789988886444 466778999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 228 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 228 NVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1223444566777777788887754
No 284
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.54 E-value=0.8 Score=43.92 Aligned_cols=107 Identities=19% Similarity=0.276 Sum_probs=72.9
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-~~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..-|
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMY---KGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEE
Confidence 4788887765 57999999874 5543 2333 677899999988 789888775333 577888999999999
Q ss_pred EEchhHHHhhh-------cCC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~-------~~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+.. ... ..-.....+.+++..+..|+.+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 230 NVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997654321 001 0113334456677777777777753
No 285
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.52 E-value=0.13 Score=47.79 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCEEEEEc----cCHHHHHHHHHhCCCEEEEeC--CCCcCCCCccchHHHHHHHHHHhcC---CCcEEE
Q 017434 218 KDVKWLQTITSLPILVKGV----LTAEDASLAIQYGAAGIIVSN--HGARQLDYVPATVMALEEVVQAAKG---RVPVFL 288 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v----~~~e~a~~a~~~Gad~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~---~i~via 288 (371)
+.++++|+. +.++-+... ...+..+..++. +|.|.+=. -|......-+..++-+.++++.... ++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 456777765 443322322 234556655553 78877632 2211111223345555555554321 467999
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
||||+ .+.+.+..++|||.+.+|+.+
T Consensus 185 DGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 185 DGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred ECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 99998 778889999999999999974
No 286
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.50 E-value=0.13 Score=47.11 Aligned_cols=90 Identities=13% Similarity=0.128 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCCEEE---EEc--------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 218 KDVKWLQTITSLPILV---KGV--------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~v---K~v--------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
+.++++++..++|++. |.. .+.++++.+.++|+|.|.+...... ...+....+.+..+++.. ++++
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCeE
Confidence 4567777767888863 221 1346889999999998877432111 011112334555555543 5777
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+. ++.+.+++..+..+|+|.+.+.
T Consensus 127 iv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 127 MA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 66 6899999999999999998654
No 287
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.49 E-value=0.023 Score=52.90 Aligned_cols=107 Identities=24% Similarity=0.370 Sum_probs=68.6
Q ss_pred ceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCC
Q 017434 127 IRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 199 (371)
Q Consensus 127 ~~~~QLy~~~d~~----~~~~~~~~a~~a---G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 199 (371)
.-|+.|-.-.|+. ...+.+++++.. |+..+-+..|.|...+|..++.-.+-.|. .+..
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl---------------g~pI 155 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL---------------GSPI 155 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC---------------CcCC
Confidence 3466654433332 234555566655 99988677888888777766521111110 0011
Q ss_pred cchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 200 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
+++ ..-.+++.|+.+++..++||++-+ +.+++|+..+++.|+|++.+..
T Consensus 156 Gsg---------~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 156 GSG---------QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCC---------CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 111 111247889999998889999886 6899999999999999999853
No 288
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.46 E-value=0.023 Score=64.61 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=87.3
Q ss_pred HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEchh
Q 017434 241 DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFL-DGGVRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 241 ~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~via-~GGI~~~~dv~kal~lGAd~V~iGr~ 314 (371)
+|..+++.|+..|++|.++-.......|.+-++..+..++ +.++.||+ +|.+|+.-|+...+.+||++|.-.-+
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYLA 681 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYLA 681 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHHH
Confidence 4778889999999999865322223455666666665554 34678888 89999999999999999999954332
Q ss_pred HH--HhhhcCC------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhccccee
Q 017434 315 VP--FSLAVDG------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHIV 359 (371)
Q Consensus 315 ~l--~~~~~~G------~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 359 (371)
+- ..+...| .+.+.++++.+.++|...|..+|.++++.-++..+.
T Consensus 682 ~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiF 734 (1485)
T PRK11750 682 YETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 734 (1485)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCcccc
Confidence 21 1111222 367889999999999999999999999888776543
No 289
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.46 E-value=0.042 Score=53.01 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=67.9
Q ss_pred HHHHHHHhhcC-CCEEEE---EccCHHHHHHHHH------hCCCEEEEeCC--CCcCCCCccchHHHHHHHHHHhcCCCc
Q 017434 218 KDVKWLQTITS-LPILVK---GVLTAEDASLAIQ------YGAAGIIVSNH--GARQLDYVPATVMALEEVVQAAKGRVP 285 (371)
Q Consensus 218 ~~i~~ir~~~~-~pv~vK---~v~~~e~a~~a~~------~Gad~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~i~ 285 (371)
+.++.+++..+ .+...| .+.+.++++.+++ +|+|.|.+.|- .... ...+.+.+.+..+.++++.+
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCce
Confidence 34666666321 112223 3578999999999 99999999885 1111 11245666666666666789
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+-++|||. .+.+.++..+|+|.+.+|.+..
T Consensus 265 lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 99999997 8999999889999999998654
No 290
>PRK14057 epimerase; Provisional
Probab=96.45 E-value=0.17 Score=47.69 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCEEEEeC-CCCc-CCCCccchHHHHHHHHHHhc---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 238 TAEDASLAIQYGAAGIIVSN-HGAR-QLDYVPATVMALEEVVQAAK---GRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 238 ~~e~a~~a~~~Gad~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~---~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
..+..+..++. +|.|.+=. ..|. ....-+..++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+|
T Consensus 144 p~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 144 PLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEC
Confidence 34555555553 77776532 1111 01112334445555554432 257799999997 678889999999999999
Q ss_pred hhHH
Q 017434 313 RPVP 316 (371)
Q Consensus 313 r~~l 316 (371)
+.+.
T Consensus 222 SalF 225 (254)
T PRK14057 222 SALF 225 (254)
T ss_pred hHhh
Confidence 8753
No 291
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.45 E-value=0.054 Score=51.35 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 217 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+.++.+|+.++.|+.+.. +.++|+++.+.++|+|+++|..
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4668999999999999984 5779999999999999999954
No 292
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.43 E-value=0.012 Score=57.82 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=44.3
Q ss_pred HHHHH--HhCCCEEEEeCCCCc----C------CCCccchHHHHHHHHHHhcCCCcEEE-ecCCCCHHHHHH----HHHc
Q 017434 242 ASLAI--QYGAAGIIVSNHGAR----Q------LDYVPATVMALEEVVQAAKGRVPVFL-DGGVRRGTDVFK----ALAL 304 (371)
Q Consensus 242 a~~a~--~~Gad~I~vs~~gg~----~------~~~~~~~~~~l~~i~~~~~~~i~via-~GGI~~~~dv~k----al~l 304 (371)
++.+. +.|+|.+++--.+.. . .+......+...++.+.. .+|++. +||+ +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 56667 499999998532110 0 001111224455665554 577655 7777 6666665 4457
Q ss_pred CC--CEEEEchhHHH
Q 017434 305 GA--SGVFVGRPVPF 317 (371)
Q Consensus 305 GA--d~V~iGr~~l~ 317 (371)
|| .+|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999997654
No 293
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.42 E-value=0.014 Score=58.54 Aligned_cols=67 Identities=9% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+.++.+.++|+|.|++....| .+....+.+.++++.++ +++|+ .|+|.|.+++.+++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g----~~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHG----HSTRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCC----CChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 578899999999999865322 12345677888888764 46644 488999999999999999999877
No 294
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.41 E-value=0.58 Score=44.97 Aligned_cols=110 Identities=18% Similarity=0.261 Sum_probs=75.5
Q ss_pred cCHHHHHHH-HHhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCHH-HHHHHHHcCCCEE
Q 017434 237 LTAEDASLA-IQYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRGT-DVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a-~~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~~-dv~kal~lGAd~V 309 (371)
.+|++|+.. .+.|+|.+-++- ||.+... ..| .++.|.+|.+.++ ++|+..=||=..++ ++.+++.+|..-|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 467887665 589999999974 5543221 134 5778999999875 69999988765554 8889999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977654211 00 1224445566777888888888864
No 295
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.41 E-value=0.14 Score=46.90 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=59.8
Q ss_pred HHHHHHHHhhcCCCEEEEE--------c---cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCc
Q 017434 217 WKDVKWLQTITSLPILVKG--------V---LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVP 285 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~--------v---~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~ 285 (371)
.+.++.+++.+++|++... + .+.++++.+.++|+|.|.+...-... ..+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PDGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CCCCCHHHHHHHHHhC--CCCe
Confidence 4667888888888986221 1 23568999999999988775421100 0011223444544442 2577
Q ss_pred EEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 286 VFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 286 via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 775 6789999999999999999774
No 296
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.39 E-value=0.028 Score=52.18 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
.+.|+...+.|+..+.+-.--|. ..+++...+.+.++.+.+ ++||=.-||||+-+++.+++.+|++-|.+|+.-
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA-~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGA-KAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccc-ccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 35678888899999987531110 124456788999999988 799999999999999999999999999999954
No 297
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.38 E-value=0.61 Score=44.80 Aligned_cols=107 Identities=15% Similarity=0.226 Sum_probs=75.2
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4788887765 57999999975 4433 3333 577899999888 7999999986666 67788999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+-.+... .. ..-.....+.+++.++..|..+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976443210 00 1223344566677777777777754
No 298
>PLN02591 tryptophan synthase
Probab=96.36 E-value=0.064 Score=50.50 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEeC
Q 017434 217 WKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+.++.+|+.+++|+++. |+.++++++.+.+.|+|+++|..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 355999999999999997 46789999999999999999954
No 299
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.33 E-value=0.14 Score=51.12 Aligned_cols=216 Identities=17% Similarity=0.128 Sum_probs=109.3
Q ss_pred ceeecCcccCcceeecccccccccCCh-----HhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCC--
Q 017434 65 TTTVLGFNISMPIMIAPTAFQKMAHPE-----GECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKH-- 137 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~~~~~~~~-----~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d-- 137 (371)
..+|.+.++++-|+.|||+-.....++ ..+..-+.-++-|+.+++++....+... . ....+..-|+-...+
T Consensus 4 P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~-~-~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 4 PIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEI-E-QFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcc-c-ccCCCCccccccCCHHH
Confidence 467888999999999999632222222 2345555555567888876543221110 0 000011112211112
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCH
Q 017434 138 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 217 (371)
Q Consensus 138 ~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (371)
.+.++++++.+++.|++++ +-+... .|....... ..-+..+.+..+ .. ..........++.
T Consensus 82 i~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~--~~~~~~~~ps~~------------~~---~~~~~~~p~~mt~ 142 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGF--LGEDKPVAPSPI------------PN---RWLPEITCRELTT 142 (382)
T ss_pred hHHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccc--cCCCCccCCCCC------------CC---CcCCCCCCCcCCH
Confidence 3467888888899998765 333221 021110000 000000000000 00 0000001133677
Q ss_pred HHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeC-C-CCc--C----------CCCccc-------hHHHHHHH
Q 017434 218 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-H-GAR--Q----------LDYVPA-------TVMALEEV 276 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~-~-gg~--~----------~~~~~~-------~~~~l~~i 276 (371)
++|+++.+.+ .+-|++|.++|.|+|.++. | |.- | ..+|.+ ..+.+..|
T Consensus 143 ~eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~v 211 (382)
T cd02931 143 EEVETFVGKF-----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEI 211 (382)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHH
Confidence 8888887763 4678999999999999975 4 431 1 112222 34567777
Q ss_pred HHHhcCCCcEEE----------------------ecCCCCHHH---HHHHHH-cCCCEEEEch
Q 017434 277 VQAAKGRVPVFL----------------------DGGVRRGTD---VFKALA-LGASGVFVGR 313 (371)
Q Consensus 277 ~~~~~~~i~via----------------------~GGI~~~~d---v~kal~-lGAd~V~iGr 313 (371)
++.++.+.+|.. .||. +.+| +++.+. .|+|.|-+..
T Consensus 212 r~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 212 KARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred HHhcCCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 777654545443 2233 3444 555565 7999998854
No 300
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.33 E-value=0.046 Score=50.81 Aligned_cols=84 Identities=17% Similarity=0.055 Sum_probs=59.9
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
.|.++.+-+..+...+.++.+.++++|+++|.| |+-. |
T Consensus 135 ~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V--d~~~--------------~-------------------------- 172 (231)
T TIGR00736 135 KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV--DAMY--------------P-------------------------- 172 (231)
T ss_pred CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE--eeCC--------------C--------------------------
Confidence 567777765444445667778888888888754 2100 0
Q ss_pred HhhhhcccCCCHHHHHHHHhhcC-CCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 206 YVANQIDRSLNWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
+.+...|+.|+.+++.++ +||+.=+ +.+.+++...+++|||+|.+.
T Consensus 173 -----g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 173 -----GKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred -----CCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 011136899999999984 9987554 689999999999999999985
No 301
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.32 E-value=0.019 Score=59.72 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCEEEEeCCCCc-C-CCCccchHHHHHHHHHHhcCCCcEEEecCCCCH-----------HHHHHHHHcCC
Q 017434 240 EDASLAIQYGAAGIIVSNHGAR-Q-LDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG-----------TDVFKALALGA 306 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~-~-~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~-----------~dv~kal~lGA 306 (371)
+.|++..+.|||-|++-+-.+. . ...-.+.++.+.++.+.+ .+|+.+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 5588889999999998654331 1 112234578888888877 7999999999998 55899999999
Q ss_pred CEEEEchhHHH
Q 017434 307 SGVFVGRPVPF 317 (371)
Q Consensus 307 d~V~iGr~~l~ 317 (371)
|-|.||+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997664
No 302
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.32 E-value=0.044 Score=51.82 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCC-CEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHH--hcCCCcEEEecCCCC
Q 017434 218 KDVKWLQTITSL-PILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQA--AKGRVPVFLDGGVRR 294 (371)
Q Consensus 218 ~~i~~ir~~~~~-pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~i~via~GGI~~ 294 (371)
+.++..|+..+. +-+--.+-+.+++++++++|+|.|.+.|. +.+.+.++.+. .++++-+=++|||.
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGgIt- 244 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGGIT- 244 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCCCC-
Confidence 348888887532 21222368999999999999999999884 22444445444 44578899999996
Q ss_pred HHHHHHHHHcCCCEEEEchhHH
Q 017434 295 GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.+..+-..|.|.+.+|.+..
T Consensus 245 ~~ni~~yA~tGVD~IS~galth 266 (280)
T COG0157 245 LENIREYAETGVDVISVGALTH 266 (280)
T ss_pred HHHHHHHhhcCCCEEEeCcccc
Confidence 8899998889999999998654
No 303
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.28 E-value=0.32 Score=47.13 Aligned_cols=128 Identities=14% Similarity=0.155 Sum_probs=88.0
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHh
Q 017434 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 128 ~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
..+++. ..+++.+.+.++++.+.|++++-+.++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~--------------------------------------------- 159 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG--------------------------------------------- 159 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------------------------------------
Confidence 334554 3577777778888888999999876531
Q ss_pred hhhcccCCCHHHHHHHHhhcC-CCEEEEEc--cCHHHH----HHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh
Q 017434 208 ANQIDRSLNWKDVKWLQTITS-LPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA 280 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~~~-~pv~vK~v--~~~e~a----~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 280 (371)
++....+.++.+|+.++ .++.++.- .+.++| +.+.+.+++.|-= ...+..++.++++++..
T Consensus 160 ----~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 160 ----DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS 227 (316)
T ss_pred ----ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC
Confidence 01123567888888774 67777753 344554 4455667766631 11234577788888776
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhH
Q 017434 281 KGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPV 315 (371)
Q Consensus 281 ~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~ 315 (371)
++||++++.+.+..|+.++++.| +|.|++--..
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~ 261 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLMK 261 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccc
Confidence 79999999999999999999965 8888876443
No 304
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.26 E-value=0.038 Score=50.73 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=60.3
Q ss_pred CHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.|+.+++..+ +-|....+.+.++++.+.++|++.++.-+. +.+.+..+.+ . .+|++- |+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~-~--~i~~iP--G~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQE-G--PIPLIP--GVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHH-c--CCCEeC--CCCC
Confidence 4567889988774 556666689999999999999999976321 1244444433 2 466664 8999
Q ss_pred HHHHHHHHHcCCCEEEE
Q 017434 295 GTDVFKALALGASGVFV 311 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~i 311 (371)
+.++.+++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999877
No 305
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.25 E-value=0.06 Score=52.67 Aligned_cols=96 Identities=21% Similarity=0.158 Sum_probs=60.0
Q ss_pred HHHhhcCCCEEEEEc------cC-------HH----HHHHHHHhCCCEEEEeCCC---C-------cCC------CCccc
Q 017434 222 WLQTITSLPILVKGV------LT-------AE----DASLAIQYGAAGIIVSNHG---A-------RQL------DYVPA 268 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v------~~-------~e----~a~~a~~~Gad~I~vs~~g---g-------~~~------~~~~~ 268 (371)
.-++.|++|+++-.- .+ ++ -++.+.++|||.|++--.+ + ... .....
T Consensus 186 ~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~ 265 (348)
T PRK09250 186 EEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDH 265 (348)
T ss_pred HHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccc
Confidence 334457999887331 11 11 2678999999999985322 1 000 00112
Q ss_pred hHHHHHHHHHHh-cCCCcEEEecCCCCH-HH----HHHH---HHcCCCEEEEchhHHH
Q 017434 269 TVMALEEVVQAA-KGRVPVFLDGGVRRG-TD----VFKA---LALGASGVFVGRPVPF 317 (371)
Q Consensus 269 ~~~~l~~i~~~~-~~~i~via~GGI~~~-~d----v~ka---l~lGAd~V~iGr~~l~ 317 (371)
..+.++.+.+.+ .+++||+..||=... +| +..+ +..||.+|.+||-...
T Consensus 266 ~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 266 PIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred hHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhc
Confidence 344556666654 347999999998853 33 4456 7789999999996653
No 306
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.24 E-value=0.95 Score=43.51 Aligned_cols=108 Identities=20% Similarity=0.302 Sum_probs=76.5
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCcc--chHHHHHHHHHHhcCCCcEEEecCCCCH-HHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVP--ATVMALEEVVQAAKGRVPVFLDGGVRRG-TDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~i~via~GGI~~~-~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887766 57999999974 55432 123 3678899999988 7999999987766 57888999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 1223345566777777888888754
No 307
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.24 E-value=0.58 Score=45.85 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=118.0
Q ss_pred ceeecccccccccCChHhH----HHHHHHHHcCCcEEecCCCCCCHHHHhccC-CC-ceEEE----------Eee--cCC
Q 017434 76 PIMIAPTAFQKMAHPEGEC----ATARAASAAGTIMTLSSWATSSVEEVSSTG-PG-IRFFQ----------LYV--TKH 137 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~----~~a~aa~~~G~~~~~s~~~~~~~eei~~~~-~~-~~~~Q----------Ly~--~~d 137 (371)
|++||=+|.. | .|++ .+.++|+++|+..+= +-+...+++.... +. .+|.+ +|- .-+
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVK--fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVK--FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELS 74 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEE--eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCC
Confidence 6788887653 3 2443 778899999987551 1123344432211 11 11111 110 124
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC-CC
Q 017434 138 RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS-LN 216 (371)
Q Consensus 138 ~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (371)
.+....+.+.+++.|...+. +|. ....-|+-..++.|. +.. ...+ ..
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~s----tpf-d~~svd~l~~~~v~~-~KI--------------------------aS~~~~n 122 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLS----TPF-DLESADFLEDLGVPR-FKI--------------------------PSGEITN 122 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEE----EeC-CHHHHHHHHhcCCCE-EEE--------------------------CcccccC
Confidence 56677788888888887653 222 122222222232221 000 0011 24
Q ss_pred HHHHHHHHhhcCCCEEEEEc-cCHHHH----HHHHHhCCC---EEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 217 WKDVKWLQTITSLPILVKGV-LTAEDA----SLAIQYGAA---GIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v-~~~e~a----~~a~~~Gad---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
+..|+.+.+ ++.||+++.. .+.++. +.+.+.|.+ .+.++-...+.-......+..++.+++.. .+||..
T Consensus 123 ~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~ 199 (329)
T TIGR03569 123 APLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGY 199 (329)
T ss_pred HHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEE
Confidence 666777765 5999999964 566664 344567875 33332111111111123566777777776 589988
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHH----HHHHHHHHHHHHHHHHHhCC
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV----RKVLQMLRDEFELTMALSGC 347 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~ 347 (371)
++=-..-.-.+.|+++||+ +|=+.|-..-+..|++.- -+-+..|.++++..-..+|.
T Consensus 200 SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~ 260 (329)
T TIGR03569 200 SDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGD 260 (329)
T ss_pred CCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCC
Confidence 7533323344567789999 555554332222332110 12345666777777777774
No 308
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.23 E-value=0.058 Score=49.28 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=57.9
Q ss_pred CHHHHHHHHhhcCCC--EEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 216 NWKDVKWLQTITSLP--ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 216 ~~~~i~~ir~~~~~p--v~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
..+.|+.+++..+.+ |-+..+.+.++++.+.++|+|+++..+ ...+.+ +.+... .++++. |+.
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~-~~~~~~--~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVI-RRAVAL--GMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHH-HHHHHC--CCcEEc--ccC
Confidence 345689998887544 444557899999999999999997521 112222 222222 455555 499
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 017434 294 RGTDVFKALALGASGVFV 311 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~i 311 (371)
|.+++.++..+|||.|.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999986
No 309
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.23 E-value=0.038 Score=51.50 Aligned_cols=107 Identities=23% Similarity=0.345 Sum_probs=69.1
Q ss_pred ceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCC
Q 017434 127 IRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTD 199 (371)
Q Consensus 127 ~~~~QLy~~~d~~----~~~~~~~~a~~a---G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 199 (371)
..|+.|-.-.|+. ...+.+++++.. |+..+-+..|.|...+|..++.-.+-.|. .+..
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl---------------g~pI 155 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL---------------GAPI 155 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC---------------CcCC
Confidence 4477764433332 234556666665 99988677788888777776521111110 0011
Q ss_pred cchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 200 DSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
+++ ..-.+.+.++.+++..++||++-+ +.+++|+..+++.|+|++.+..
T Consensus 156 Gsg---------~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 156 GSG---------LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCC---------CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 111 111246779999998889999885 6899999999999999999853
No 310
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.20 E-value=0.041 Score=54.16 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCEEEEeC-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 239 AEDASLAIQYGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
.+-++.+.++|+|.|++.. ||- ....++.++.+++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~-----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH-----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT-----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc-----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 4568889999999999974 332 2345677888888875 788886 88999999999999999999988
No 311
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.20 E-value=0.065 Score=48.71 Aligned_cols=126 Identities=18% Similarity=0.287 Sum_probs=77.3
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcc
Q 017434 133 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 212 (371)
Q Consensus 133 y~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (371)
|...+.+.+.+-++.++++|++.+++-+-. .+
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~------------------------------------------------~d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALT------------------------------------------------ED 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BE------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeEC------------------------------------------------CC
Confidence 444455577788888999999999863311 12
Q ss_pred cCCCHHHHHHHHhhc-CCCEEEEEc----cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 213 RSLNWKDVKWLQTIT-SLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~-~~pv~vK~v----~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
..++.+.++.+.+.. +.|+++=-. .+++. .+.+.++|++.|-.|+... .....++.|+++.+...+++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 234555566666655 677776543 33443 5678899999998765322 2233456777777776678999
Q ss_pred EEecCCCCHHHHHHHHH-cCCCEEEE
Q 017434 287 FLDGGVRRGTDVFKALA-LGASGVFV 311 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~-lGAd~V~i 311 (371)
++-|||+ .+++.+.++ +|+..+=.
T Consensus 174 m~GgGv~-~~nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 174 MPGGGVR-AENVPELVEETGVREIHG 198 (201)
T ss_dssp EEESS---TTTHHHHHHHHT-SEEEE
T ss_pred EecCCCC-HHHHHHHHHhhCCeEEee
Confidence 9999998 677888777 88877644
No 312
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.15 E-value=0.03 Score=51.70 Aligned_cols=81 Identities=21% Similarity=0.118 Sum_probs=55.6
Q ss_pred CHHHHHHHHhhc-----CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017434 216 NWKDVKWLQTIT-----SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 216 ~~~~i~~ir~~~-----~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G 290 (371)
..+.|+.+++.+ ++-|-+..+.++++++.+.++|+++|+--+ .+.+.+..+. .. ++|++-
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~-~~--~i~~iP-- 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCN-RR--KVPYSP-- 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHH-Hc--CCCEeC--
Confidence 345566665433 244555668999999999999999996311 1223333332 22 566665
Q ss_pred CCCCHHHHHHHHHcCCCEEEE
Q 017434 291 GVRRGTDVFKALALGASGVFV 311 (371)
Q Consensus 291 GI~~~~dv~kal~lGAd~V~i 311 (371)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999999999998744
No 313
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.15 E-value=0.071 Score=50.97 Aligned_cols=119 Identities=23% Similarity=0.253 Sum_probs=74.8
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh-----cCCCcEEE-ecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA-----KGRVPVFL-DGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~i~via-~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
++|..+++.|+..|++|..+........|.+-++..+..++ +.++.+|+ +|-+|+.-|+.-.+..|||+|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 35788899999999999765322112345555566665554 23566555 5679999999999999999984222
Q ss_pred hH--HHhhhcCC-------hHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcccce
Q 017434 314 PV--PFSLAVDG-------EAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI 358 (371)
Q Consensus 314 ~~--l~~~~~~G-------~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 358 (371)
++ +..+...| ++.++++...+.++|...|..+|...++--++.-+
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqi 279 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQI 279 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhccccee
Confidence 11 11122223 36789999999999999999999999988876544
No 314
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.077 Score=51.83 Aligned_cols=91 Identities=18% Similarity=0.302 Sum_probs=70.5
Q ss_pred CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchh
Q 017434 124 GPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGL 203 (371)
Q Consensus 124 ~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 203 (371)
.+.|....+-...|.+.+.+.++.++++|++.+.|+= |.++.+..
T Consensus 140 l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg~---------------------------- 184 (358)
T KOG2335|consen 140 LNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKGL---------------------------- 184 (358)
T ss_pred cCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcCC----------------------------
Confidence 3456666776678999999999999999999987652 22222100
Q ss_pred hhHhhhhcccCCCHHHHHHHHhhcC-CCEEEEE-ccCHHHHHHHHH-hCCCEEEEe
Q 017434 204 ASYVANQIDRSLNWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQ-YGAAGIIVS 256 (371)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~~ir~~~~-~pv~vK~-v~~~e~a~~a~~-~Gad~I~vs 256 (371)
..+..+|+.|+.|++... +||++=| +.+.+|+.++.+ .|+|+|.+.
T Consensus 185 -------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 185 -------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 124568999999999997 9999876 688999999988 999999874
No 315
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.09 E-value=0.53 Score=45.18 Aligned_cols=195 Identities=17% Similarity=0.081 Sum_probs=107.2
Q ss_pred ceeecccccccccCChHhHHHHHHHHHc---------CCcEEe-cCCC-----------CCCHHHHh-------ccCCCc
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAA---------GTIMTL-SSWA-----------TSSVEEVS-------STGPGI 127 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~---------G~~~~~-s~~~-----------~~~~eei~-------~~~~~~ 127 (371)
+.++.|-.+ |..-|+.+.+. |...+. |+.+ ..+++|.. ....-|
T Consensus 9 ~~l~~p~~~--------D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 9 PLERLMEAH--------NGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred CCEEEecCc--------CHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 366777443 45788999999 887554 3221 12344432 222345
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHh
Q 017434 128 RFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYV 207 (371)
Q Consensus 128 ~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (371)
..+=.=...++..+.+.+++..++|+.++.|. |.. .|++... +. ..+....+
T Consensus 81 v~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~--------------~pk~cg~--~~-----------~~~~~~l~ 132 (285)
T TIGR02320 81 IILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKL--------------GLKKNSL--FG-----------NDVAQPQA 132 (285)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccC--------------CCccccc--cC-----------CCCccccc
Confidence 55544444677788889999999999988763 321 1211100 00 00000000
Q ss_pred hhhcccCCCHHHHHHHHhh-c--CCCEEEEE-----ccCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHH
Q 017434 208 ANQIDRSLNWKDVKWLQTI-T--SLPILVKG-----VLTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEE 275 (371)
Q Consensus 208 ~~~~~~~~~~~~i~~ir~~-~--~~pv~vK~-----v~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~ 275 (371)
+.....+.|+..++. . +++|+... ....++ ++...++|||.|.+-. ++.+.+.+.+
T Consensus 133 ----s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~--------~~~~~~ei~~ 200 (285)
T TIGR02320 133 ----SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS--------RKKDPDEILE 200 (285)
T ss_pred ----CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC--------CCCCHHHHHH
Confidence 011112335555544 2 45666651 123333 5778999999999841 1244566666
Q ss_pred HHHHhcC---CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 276 VVQAAKG---RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 276 i~~~~~~---~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+.+.++. ++|++...+-.....+.+.-++|.+.|..|..++++
T Consensus 201 ~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 201 FARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 6666543 568877553111223555557899999999877654
No 316
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.07 E-value=0.059 Score=49.31 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.|+...+.||++|.+....+. . ....+.+..+++.+ ++||+.-|+|++..++..++++|||+|.++.+.+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccC
Confidence 36688899999999988643211 0 12345666676666 7999999999999999999999999999887543
No 317
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.05 E-value=0.027 Score=57.61 Aligned_cols=252 Identities=17% Similarity=0.233 Sum_probs=133.2
Q ss_pred ccccceeecccc-CCCCCCccceeec-CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhc
Q 017434 45 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (371)
Q Consensus 45 ~~~~~~l~pr~l-~~~~~~d~s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~ 122 (371)
.||++.|+|..- ...+++|++|++- +..++.||+-|||...+ |-.++.+.++.|...++.. +.++++..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 599999999754 3446789999885 78899999999997654 6678888888877666643 345543321
Q ss_pred ----cC--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC----CCc-chhHHhhhhcCCCCccccccccc-c
Q 017434 123 ----TG--PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP----RLG-RREADIKNRFVLPPHLTLKNYEG-L 190 (371)
Q Consensus 123 ----~~--~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p----~~g-~r~~d~~~~~~~p~~~~~~~~~~-~ 190 (371)
.. .....-++..-.......+.++...+.++..+.|.=+.. ..| -..+|+..... + ......+.. .
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~-~~~V~dvm~~~ 152 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-K-GKPVSEVMTRE 152 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-C-CCCHHHhhCCC
Confidence 11 111111111111223344566666777887776642210 011 11233321000 0 000000000 0
Q ss_pred ccCCCCC-CCcchhhhHhhhh-------cc------cCCCHHHHHHHHhh------cCCCEEEEEcc-----CHHHHHHH
Q 017434 191 YIGKMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTI------TSLPILVKGVL-----TAEDASLA 245 (371)
Q Consensus 191 ~~~~~~~-~~~~~~~~~~~~~-------~~------~~~~~~~i~~ir~~------~~~pv~vK~v~-----~~e~a~~a 245 (371)
......+ .....+-..+... .| .-.+.+++....+. -+.-+.|.+.. +.+.++.+
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 0000000 0000000000000 00 00122332222111 01223333321 24668889
Q ss_pred HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 246 ~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
.++|+|.|.|...-|. ....++.+.++++.++ ++||++ |+|-|.+++..++.+|||+|-+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~~-~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTYP-DLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhCC-CCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 9999999999763221 2346677888887754 689998 99999999999999999999766
No 318
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.1 Score=49.09 Aligned_cols=87 Identities=30% Similarity=0.355 Sum_probs=59.4
Q ss_pred HHHHHhhcCCCEEEEE------c-----cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCC
Q 017434 220 VKWLQTITSLPILVKG------V-----LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV 284 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~------v-----~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 284 (371)
+..-...+++|+++-. + .+++. ++.+.+.|+|.|++.-.| ..+...++.+.+ .+
T Consensus 135 v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~v 203 (265)
T COG1830 135 VVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GV 203 (265)
T ss_pred HHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CC
Confidence 4444456789988733 1 12222 567899999999984321 236677777777 49
Q ss_pred cEEEecCCCC-HH-HH----HHHHHcCCCEEEEchhHHH
Q 017434 285 PVFLDGGVRR-GT-DV----FKALALGASGVFVGRPVPF 317 (371)
Q Consensus 285 ~via~GGI~~-~~-dv----~kal~lGAd~V~iGr~~l~ 317 (371)
||+..||=.+ .+ ++ ..++..||.++.+||-+..
T Consensus 204 pVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 204 PVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999999887 22 22 3456689999999996653
No 319
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.03 E-value=0.069 Score=49.61 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=29.9
Q ss_pred HHHHHHHHhh-cCCCEEEEE--c-cCHHH-HHHHHHhCCCEEEEeCCCC
Q 017434 217 WKDVKWLQTI-TSLPILVKG--V-LTAED-ASLAIQYGAAGIIVSNHGA 260 (371)
Q Consensus 217 ~~~i~~ir~~-~~~pv~vK~--v-~~~e~-a~~a~~~Gad~I~vs~~gg 260 (371)
.+.++++++. ..+++=+|. + .+++. ++.+.++|+|.++++..+|
T Consensus 43 ~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag 91 (230)
T PRK00230 43 PQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGG 91 (230)
T ss_pred HHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCC
Confidence 4567888876 456677776 3 34544 5667889999999975433
No 320
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.93 E-value=0.035 Score=57.40 Aligned_cols=247 Identities=17% Similarity=0.231 Sum_probs=134.8
Q ss_pred ccccceeecccc-CCCCCCccceeec-CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhc
Q 017434 45 AFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSS 122 (371)
Q Consensus 45 ~~~~~~l~pr~l-~~~~~~d~s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~ 122 (371)
.||++.|+|..- ...+++|++|++- ...++.||+-|||...+ |..||.+.++.|...+++. +.++|++.+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~~--~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIHN--NCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEecC--CCCHHHHHH
Confidence 699999999753 3556788988875 45788999999997665 7799999999999988853 567766543
Q ss_pred cCC-----------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC----CCCc-chhHHhhhhcCCCCcccccc
Q 017434 123 TGP-----------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT----PRLG-RREADIKNRFVLPPHLTLKN 186 (371)
Q Consensus 123 ~~~-----------~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~----p~~g-~r~~d~~~~~~~p~~~~~~~ 186 (371)
... .+ +-+.+ .....++++...+.++..+.|+-+. -..| ...+|++..- ........
T Consensus 91 ~v~kvk~~e~g~i~dp--vtv~p---d~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~d 163 (495)
T PTZ00314 91 EVRKVKRFENGFIMDP--YVLSP---NHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSE 163 (495)
T ss_pred HHhhccccccccccCC--eecCC---CCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHH
Confidence 211 12 12222 2233455566667788777764321 0011 1223332100 00000000
Q ss_pred cccc--ccCCCCCC-CcchhhhHhhhh-------cc--c----CCCHHHHHHHHhh------cCCCEEEEEc--cC---H
Q 017434 187 YEGL--YIGKMDKT-DDSGLASYVANQ-------ID--R----SLNWKDVKWLQTI------TSLPILVKGV--LT---A 239 (371)
Q Consensus 187 ~~~~--~~~~~~~~-~~~~~~~~~~~~-------~~--~----~~~~~~i~~ir~~------~~~pv~vK~v--~~---~ 239 (371)
+... ......+. ....+...+... .+ . -.+.+++...... -...+.|... .+ .
T Consensus 164 iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~ 243 (495)
T PTZ00314 164 VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDI 243 (495)
T ss_pred hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHH
Confidence 0000 00000000 000000000000 00 0 0112222211110 0123333322 22 3
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+.++.+.++|+|.|.+...-|+ ....++.+.++++..+ +++|++ |.|.|.+++..++.+|||+|-+|
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~----s~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGN----SIYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCC----chHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 5578899999999999753222 1234678888888764 588888 99999999999999999999764
No 321
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.88 E-value=1.6 Score=41.78 Aligned_cols=182 Identities=18% Similarity=0.139 Sum_probs=106.1
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe-----cCCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL-----SSWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~-----s~~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ +++.+.+.+|-. +..+ .+.++++.. .+.+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46677887555445555556888888888976544 233445665532 2222 356677653 46677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.++++|++++.+.. |... + ....-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~p--P~~~------------~-------------------------------~~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVVT--PYYN------------K-------------------------------PTQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEECC--CcCC------------C-------------------------------CCHHHHHHHH
Confidence 78899999999999998742 2210 0 0001123445
Q ss_pred HHHHhhcCCCEEEEEc-------cCHHHHHHHHHhC-CCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017434 221 KWLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 292 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v-------~~~e~a~~a~~~G-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI 292 (371)
+.+.+.+++|+++=.. .+++..+++.+.+ +-+|+-+. .+...+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEAT----------GDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEE-C--
Confidence 6666677889887653 4567777775432 22222211 123444445444433444443 3
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
....++..+.+|+++++-|...+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~ 209 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANV 209 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhh
Confidence 23446778899999999887544
No 322
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.88 E-value=0.038 Score=57.21 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=132.7
Q ss_pred hccccceeecccc-CCCCCCccceeec-CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh
Q 017434 44 NAFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (371)
Q Consensus 44 ~~~~~~~l~pr~l-~~~~~~d~s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~ 121 (371)
-.||++.|+|..- ...+++|++|.+- ...++.||+-|||...+ |..+|.+.++.|...++.. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 4699999999753 3446788887763 35677899999997665 6689999999997766753 34555432
Q ss_pred c----cC--C-C--ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC-----CCCCcchhHHhhhhcCCCCccccccc
Q 017434 122 S----TG--P-G--IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVD-----TPRLGRREADIKNRFVLPPHLTLKNY 187 (371)
Q Consensus 122 ~----~~--~-~--~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd-----~p~~g~r~~d~~~~~~~p~~~~~~~~ 187 (371)
. .. . . +-.+.+. ....+.+.++...+.++..+.|+=+ .+..-...+|++..- .+. .....+
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV~---pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-~~~-~~V~eI 168 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVKS---PSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-DRE-TKLSEV 168 (505)
T ss_pred HHHHHhhcccccccCCCeeeC---CCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-ccC-CcHHHH
Confidence 2 11 1 0 0111122 2223345566667778877776422 111111223332100 000 000000
Q ss_pred cccc--cCCCCC-CCcchhhhHhhhh-------cc------cCCCHHHHHHHHhhc---------CCCEEEEEc--c---
Q 017434 188 EGLY--IGKMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTIT---------SLPILVKGV--L--- 237 (371)
Q Consensus 188 ~~~~--~~~~~~-~~~~~~~~~~~~~-------~~------~~~~~~~i~~ir~~~---------~~pv~vK~v--~--- 237 (371)
.... .....+ .....+-+.+... .+ .-++.+++.+..+.- ..-+.|... .
T Consensus 169 Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~ 248 (505)
T PLN02274 169 MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRES 248 (505)
T ss_pred hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCcc
Confidence 0000 000000 0000000000000 00 001334443333321 123444331 1
Q ss_pred CHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 238 TAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 238 ~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
..|-++.+.++|+|.|.+....|. ....|+.+.++++..+ +++||+ |+|.|.+++..++++|||+|.+|
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 236688899999999999764221 2345688899988764 355554 88999999999999999999775
No 323
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.93 Score=41.44 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=66.2
Q ss_pred cCCCHHHHHHHHhhcCCCEEEEEccCH---HHHHHHHHhCCCEEEEeCC-----CCcCCCCccchHHHHHHHHHHhcCCC
Q 017434 213 RSLNWKDVKWLQTITSLPILVKGVLTA---EDASLAIQYGAAGIIVSNH-----GARQLDYVPATVMALEEVVQAAKGRV 284 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~~pv~vK~v~~~---e~a~~a~~~Gad~I~vs~~-----gg~~~~~~~~~~~~l~~i~~~~~~~i 284 (371)
.+.+.+.++++++..++||+--..... .........-+|.+.+... ||+ +-.-+|+.+... ....
T Consensus 83 G~e~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~~~ 155 (208)
T COG0135 83 GDEDPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RLSK 155 (208)
T ss_pred CCCCHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----cccC
Confidence 445678899999988889873333322 2344455666899988874 332 223467777654 1257
Q ss_pred cEEEecCCCCHHHHHHHHHcCC-CEEEEchhH
Q 017434 285 PVFLDGGVRRGTDVFKALALGA-SGVFVGRPV 315 (371)
Q Consensus 285 ~via~GGI~~~~dv~kal~lGA-d~V~iGr~~ 315 (371)
|++..||+. ++++.++++++. .+|=+.+.+
T Consensus 156 ~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 156 PVMLAGGLN-PDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred CEEEECCCC-HHHHHHHHHhcCCceEEecccc
Confidence 899999996 999999999986 888887743
No 324
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.80 E-value=0.22 Score=46.66 Aligned_cols=126 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcc
Q 017434 133 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 212 (371)
Q Consensus 133 y~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (371)
|...+.+.+.+-++.++++|++.+++-+-.| +
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~------------------------------------------------d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDV------------------------------------------------D 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeECC------------------------------------------------C
Confidence 4444445677778888999999988643211 1
Q ss_pred cCCCHHHHHHHHhhc-CCCEEEEEc----cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 213 RSLNWKDVKWLQTIT-SLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~-~~pv~vK~v----~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
...+.+.++.+.+.. ++|+++=-. .++.. .+.+.++|++.|-.|+... .....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhcCCCE-E
Confidence 224555566666655 567766532 23433 5778999999997754321 12234556666666554444 8
Q ss_pred EEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 287 FLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 287 ia~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
++-|||+ .+++.+...+|+..+=..
T Consensus 174 m~GgGV~-~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVR-LSNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCC-HHHHHHHHHcCCCEEeeC
Confidence 8888887 788888778999888654
No 325
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.79 E-value=0.23 Score=48.59 Aligned_cols=187 Identities=16% Similarity=0.123 Sum_probs=103.8
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEE---ecCCCCC------C--------HHHHhccCCCceEEEEeecC
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT---LSSWATS------S--------VEEVSSTGPGIRFFQLYVTK 136 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~---~s~~~~~------~--------~eei~~~~~~~~~~QLy~~~ 136 (371)
..|++++ +.+. .++.-..+++.+.++|+.+. +|..... . ++.+.+...-|.++.|-+
T Consensus 99 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIAS-LNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEE-eCCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 4687766 3332 23333588888888886554 2221111 1 122333334688888754
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
+.+...++++.++++|+++++++=..+.. .-|+.+. . + .. ... ++.....+..
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~~-~-~---~~------------~~g-------lSG~~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLETL-E-V---VP------------NLL-------LSSPAEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Ccccccc-c-e---ec------------CCC-------cCCccchhHH
Confidence 33456788889999999999875322111 0010000 0 0 00 000 1100111245
Q ss_pred HHHHHHHHhhcCCCEEE-EEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchH-HHHHHHHHHhcCCCcEEEecCCCC
Q 017434 217 WKDVKWLQTITSLPILV-KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATV-MALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~v-K~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
++.+.++++..++||+. .++.+.+||.+.+.+|||+|.+... .+..|+..+ +.+.++.+.+. .-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l~-------~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWME-------EHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHHH-------HcCCCC
Confidence 67788888888999884 4579999999999999999998532 122233322 23344444332 347888
Q ss_pred HHHHHHHHH
Q 017434 295 GTDVFKALA 303 (371)
Q Consensus 295 ~~dv~kal~ 303 (371)
-+|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 888765433
No 326
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.77 E-value=2 Score=41.28 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-~~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||-+ .+.| .++.|.+|++.+ ++|+..=||=.. -+++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4688887655 69999999975 5543 3333 677899999988 789888775443 466778999999999
Q ss_pred EEchhHHHhhh-------cCC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLA-------VDG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~-------~~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+-.+.. ... ..-.....+.+++.++..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99997653321 000 0113334455667777777777753
No 327
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.77 E-value=0.049 Score=52.86 Aligned_cols=90 Identities=18% Similarity=0.361 Sum_probs=60.2
Q ss_pred cCCCceEEEEeecCC--hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCc
Q 017434 123 TGPGIRFFQLYVTKH--RNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDD 200 (371)
Q Consensus 123 ~~~~~~~~QLy~~~d--~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (371)
..+.|..+.+-...+ .+.+.++++.++++|+++|.|+--++.-
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q----------------------------------- 164 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ----------------------------------- 164 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC-----------------------------------
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh-----------------------------------
Confidence 344566666655555 6778999999999999999886432210
Q ss_pred chhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHh-CCCEEEEe
Q 017434 201 SGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQY-GAAGIIVS 256 (371)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~-Gad~I~vs 256 (371)
.......|+.++++++.+++||+.=| +.+.++++...+. |+|+|.+.
T Consensus 165 ---------~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 165 ---------RYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---------CCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ---------cCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 01123579999999999999999776 6889999988776 99999984
No 328
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.73 E-value=0.12 Score=49.27 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=89.4
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCC------C-------C----HHHHhccCCCceEEEEeecC
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWAT------S-------S----VEEVSSTGPGIRFFQLYVTK 136 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~------~-------~----~eei~~~~~~~~~~QLy~~~ 136 (371)
..|++++ +.+. .++.=...++.+.+.|+.++-=.++. . . ++++++...-|.++.+-+..
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576554 4332 23323477888888887655211110 0 1 12233333457788876666
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
+.+.+.++++.++++|++.+.++-..... ..+... ..|. .. ....+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~~---~~~~~~--~~~~---~~------------~~~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISGR---VVDLKT--VGPG---PK------------RGTGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcc---ceeccc--Cccc---cC------------CCCCc----cCcHHHHHHH
Confidence 66678899999999999999876322110 000000 0000 00 00000 0000011235
Q ss_pred HHHHHHHHhhc--CCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 217 WKDVKWLQTIT--SLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 217 ~~~i~~ir~~~--~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
++.++++++.+ ++||+.=+ +.+++++..++++|||+|.+.
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 79987665 578999999999999999884
No 329
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.71 E-value=0.18 Score=54.95 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=56.6
Q ss_pred cCHHHHHHHH----Hh---CCCEEEEeCCCCcC-CCCc--cchHHHHHHHHHHhcC-CCcEEEecCCCCHHHHHHHHHcC
Q 017434 237 LTAEDASLAI----QY---GAAGIIVSNHGARQ-LDYV--PATVMALEEVVQAAKG-RVPVFLDGGVRRGTDVFKALALG 305 (371)
Q Consensus 237 ~~~e~a~~a~----~~---Gad~I~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~~-~i~via~GGI~~~~dv~kal~lG 305 (371)
-+.+++..+. .. |+|+|.++--..+. .... +-.++.+.++++.+.. .+||++-||| +.+++.++++.|
T Consensus 109 h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G 187 (755)
T PRK09517 109 ETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG 187 (755)
T ss_pred CCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4666665532 22 59999997432221 2222 2256778888777621 3999999999 599999999999
Q ss_pred CCEEEEchhHHH
Q 017434 306 ASGVFVGRPVPF 317 (371)
Q Consensus 306 Ad~V~iGr~~l~ 317 (371)
|++|.+.+.++.
T Consensus 188 a~giAvisai~~ 199 (755)
T PRK09517 188 IDGLCVVSAIMA 199 (755)
T ss_pred CCEEEEehHhhC
Confidence 999999998873
No 330
>PLN02417 dihydrodipicolinate synthase
Probab=95.68 E-value=0.11 Score=49.55 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=59.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCc-cchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYV-PATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-. .-..+.+..+.+.+.+++||++.=|-.+..|+++ +-++|||+|++-.|++
T Consensus 28 i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y 107 (280)
T PLN02417 28 VNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYY 107 (280)
T ss_pred HHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 3556789999999976644211111 1123345555666667899988666556666665 3458999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~f~~va~ 124 (280)
T PLN02417 108 GKT---SQEGLIKHFETVLD 124 (280)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 45666666655544
No 331
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.60 E-value=0.13 Score=49.65 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=60.6
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCC-ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDY-VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVF----KALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~-~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~----kal~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...- ..-..+.+..+++.+.+++||++.-|-.+-.|.+ ++-++|||+|++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 456678999999997654321111 1113345566666677789999766666666664 34558999999999998
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRDE 337 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~e 337 (371)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 753 456666665555543
No 332
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.60 E-value=2.2 Score=40.58 Aligned_cols=192 Identities=17% Similarity=0.193 Sum_probs=104.0
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEec-CCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCC
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLS-SWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGF 153 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s-~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~ 153 (371)
.-++..|.... +++.-..+|+..+++|..++.. .+...+ .|.-||=. ..+....+-+.+++.|.
T Consensus 28 ~~~iaGPCsie---~~~~~~~~A~~lk~~g~~~~r~~~~kpRT---------s~~s~~G~---g~~gl~~l~~~~~~~Gl 92 (266)
T PRK13398 28 KIIIAGPCAVE---SEEQMVKVAEKLKELGVHMLRGGAFKPRT---------SPYSFQGL---GEEGLKILKEVGDKYNL 92 (266)
T ss_pred EEEEEeCCcCC---CHHHHHHHHHHHHHcCCCEEEEeeecCCC---------CCCccCCc---HHHHHHHHHHHHHHcCC
Confidence 34666776654 2344468999999999986653 221111 22333321 24455556666677887
Q ss_pred cEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEE
Q 017434 154 KAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILV 233 (371)
Q Consensus 154 ~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~v 233 (371)
..+. ++-.+.. -+.-..+ .+- + .+. .......+.++++ ..++.||++
T Consensus 93 ~~~t-e~~d~~~----~~~l~~~-vd~-~-----------------------kIg--a~~~~n~~LL~~~-a~~gkPV~l 139 (266)
T PRK13398 93 PVVT-EVMDTRD----VEEVADY-ADM-L-----------------------QIG--SRNMQNFELLKEV-GKTKKPILL 139 (266)
T ss_pred CEEE-eeCChhh----HHHHHHh-CCE-E-----------------------EEC--cccccCHHHHHHH-hcCCCcEEE
Confidence 6543 2211111 1110000 000 0 000 0001134556666 457999999
Q ss_pred EEc--cCHHHH----HHHHHhCCCEEEEeCCCCcCCCCc-cc--hHHHHHHHHHHhcCCCcEEEecCCCC------HHHH
Q 017434 234 KGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYV-PA--TVMALEEVVQAAKGRVPVFLDGGVRR------GTDV 298 (371)
Q Consensus 234 K~v--~~~e~a----~~a~~~Gad~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~i~via~GGI~~------~~dv 298 (371)
|.. .+.++. +.+...|-.-+.+--.|++....- .. .+..++.+++.. ..||+.|.+=.. ....
T Consensus 140 k~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV~~D~sHs~G~~~~v~~~~ 217 (266)
T PRK13398 140 KRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPIIVDPSHATGRRELVIPMA 217 (266)
T ss_pred eCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCEEEeCCCcccchhhHHHHH
Confidence 975 366664 445567876666654555333221 11 344566665554 589999643222 4667
Q ss_pred HHHHHcCCCEEEEchhHH
Q 017434 299 FKALALGASGVFVGRPVP 316 (371)
Q Consensus 299 ~kal~lGAd~V~iGr~~l 316 (371)
..++++||++++|=+-+-
T Consensus 218 ~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 218 KAAIAAGADGLMIEVHPE 235 (266)
T ss_pred HHHHHcCCCEEEEeccCC
Confidence 788899999999998553
No 333
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.59 E-value=0.13 Score=49.49 Aligned_cols=91 Identities=19% Similarity=0.324 Sum_probs=59.4
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~ka----l~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+.+++|||+.-|- +-.+.++. -++|||++++-.|++
T Consensus 27 ~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 27 VEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355778999999996654321111111 234456666666678999997775 66666643 347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.++++.+.+
T Consensus 106 ~~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 106 TEA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 45666666655544
No 334
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.58 E-value=2.1 Score=41.20 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=107.4
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--c---CCCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVSS-------TGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s---~~~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++=..+.+-..+.|+...+ + ++.+.+.+|-.+ ... -|.+.++-. .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 46778887544444555455777777888875443 2 334456665322 222 355666543 45666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.|++.|++++.+.. |.. + +. ...-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~p--P~y----------~--~~-------------------------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVIV--PYY----------N--KP-------------------------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEcC--ccC----------C--CC-------------------------------CHHHHHHHH
Confidence 67888999999999998742 321 0 00 001123556
Q ss_pred HHHHhhc-CCCEEEEEc-------cCHHHHHHHHH--hCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017434 221 KWLQTIT-SLPILVKGV-------LTAEDASLAIQ--YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 221 ~~ir~~~-~~pv~vK~v-------~~~e~a~~a~~--~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G 290 (371)
+.+.+.+ ++||++=.+ .+++...++.+ -.+-+|+-+. ..+..+.++....+.+..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 7777788 899988754 45677777764 2344444432 123444455444433444443 3
Q ss_pred CCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 291 GVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 291 GI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
- ...++.++.+||++++.|..-+
T Consensus 188 -~--d~~~~~~l~~Ga~G~is~~~n~ 210 (294)
T TIGR02313 188 -I--ELLCLPMLAIGAAGSIAATANV 210 (294)
T ss_pred -c--hHHHHHHHHCCCCEEEecHHhh
Confidence 2 3566778899999999887543
No 335
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.58 E-value=0.12 Score=49.87 Aligned_cols=92 Identities=18% Similarity=0.302 Sum_probs=59.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~ka----l~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.-|- +-.+.++. -.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 356778899999996654321111111 234566666777778999986664 55666543 347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRDE 337 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~e 337 (371)
+.. .++++.+++..+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 456666666665554
No 336
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.56 E-value=0.14 Score=50.00 Aligned_cols=67 Identities=21% Similarity=0.109 Sum_probs=51.0
Q ss_pred HHHHHHHHhC--CCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYG--AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~G--ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+-++.+.++| +|.|++...-|. ....++.++.+++..+ . +.+.-|.|-|++++..++.+|||+|-+|
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 4477788885 999999753221 2346678888888774 3 4555588999999999999999998776
No 337
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.54 E-value=0.58 Score=45.90 Aligned_cols=214 Identities=18% Similarity=0.168 Sum_probs=108.4
Q ss_pred ceeec-CcccCcceeecccccccccCChH-----hHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEE--EeecC
Q 017434 65 TTTVL-GFNISMPIMIAPTAFQKMAHPEG-----ECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQ--LYVTK 136 (371)
Q Consensus 65 s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~-----e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Q--Ly~~~ 136 (371)
..+|. |.++++-|+++||... ..+.+| .+..-..-++-|+.+++++......+ ....+. ..-| +|...
T Consensus 4 P~~i~~~~~lkNRi~~~p~~~~-~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~--~~~~~~-~~~~~~~~~d~ 79 (338)
T cd04733 4 PLTLPNGATLPNRLAKAAMSER-LADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPR--HLEEPG-IIGNVVLESGE 79 (338)
T ss_pred CeEcCCCcEEcccceecccccc-cccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcc--cccCCC-cCCCcccCCHH
Confidence 46788 5999999999999632 222222 23444444445777776653222211 011110 0012 33222
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
..+.++++++.+++.|+++++ -+.. .|.+....... .| +.+..+ .. .. .... .......++
T Consensus 80 ~i~~~~~l~~~vh~~G~~~~~-Ql~h--~G~~~~~~~~~--~~--~~ps~~-------~~--~~-~~~~--~~~~p~~mt 140 (338)
T cd04733 80 DLEAFREWAAAAKANGALIWA-QLNH--PGRQSPAGLNQ--NP--VAPSVA-------LD--PG-GLGK--LFGKPRAMT 140 (338)
T ss_pred HHHHHHHHHHHHHhcCCEEEE-EccC--CCcCCCccCCC--CC--cCCCCC-------cC--cc-cccc--cCCCCCcCC
Confidence 334667888888899997543 3332 22221100000 00 000000 00 00 0000 000112356
Q ss_pred HHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc---C----------CCCccc-------hHHHHHHH
Q 017434 217 WKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR---Q----------LDYVPA-------TVMALEEV 276 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i 276 (371)
.++|+++.+.+ .+-|+++.++|.|+|.++...|+ | ..+|.+ ..+.+..|
T Consensus 141 ~~eI~~~i~~~-----------~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aI 209 (338)
T cd04733 141 EEEIEDVIDRF-----------AHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAI 209 (338)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHH
Confidence 77788877753 36789999999999999643221 1 112222 34677888
Q ss_pred HHHhcCCCcEEEe--------cCCCCHHHH---HHHHH-cCCCEEEEch
Q 017434 277 VQAAKGRVPVFLD--------GGVRRGTDV---FKALA-LGASGVFVGR 313 (371)
Q Consensus 277 ~~~~~~~i~via~--------GGI~~~~dv---~kal~-lGAd~V~iGr 313 (371)
+++++++++|... +|. +.+|. ++.|+ +|.|.+-+..
T Consensus 210 R~avG~d~~v~vris~~~~~~~g~-~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 210 RAAVGPGFPVGIKLNSADFQRGGF-TEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHcCCCCeEEEEEcHHHcCCCCC-CHHHHHHHHHHHHHcCCCEEEecC
Confidence 8887666777653 344 45544 55555 6999987643
No 338
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.53 E-value=0.47 Score=42.59 Aligned_cols=87 Identities=23% Similarity=0.193 Sum_probs=59.0
Q ss_pred HHHHHHHHhh-cCCCEEEEE-ccCH--HHHHHHHHhCCCEEEEeCCCCcCCCCccchHH-HHHHHHHHhcCCCcEEEe-c
Q 017434 217 WKDVKWLQTI-TSLPILVKG-VLTA--EDASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGRVPVFLD-G 290 (371)
Q Consensus 217 ~~~i~~ir~~-~~~pv~vK~-v~~~--e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~i~via~-G 290 (371)
.+.++++++. .+.|+.+=. +.++ ..++.+.++|+|.|.++.... +.... .+..+++ . .++++++ =
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~-~--g~~~~v~~~ 111 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKK-Y--GKEVQVDLI 111 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHH-c--CCeEEEEEe
Confidence 4678888886 478887632 2233 357889999999999954211 11122 2333332 2 5777765 7
Q ss_pred CCCCHHHHHHHHHcCCCEEEEc
Q 017434 291 GVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 291 GI~~~~dv~kal~lGAd~V~iG 312 (371)
+..|+.++.+++..|+|.|.++
T Consensus 112 ~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 112 GVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred CCCCHHHHHHHHHCCCCEEEEc
Confidence 8999999999888999999985
No 339
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.53 E-value=0.062 Score=55.28 Aligned_cols=244 Identities=16% Similarity=0.177 Sum_probs=129.0
Q ss_pred hccccceeeccccC-CC-CCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh
Q 017434 44 NAFSRILFRPRILR-DV-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (371)
Q Consensus 44 ~~~~~~~l~pr~l~-~~-~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~ 121 (371)
-.||++.|+|.... .. +++|++|++ +..++.||+-|||...+ |..||.+.++.|...++.. +.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih~--nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLPQ--DIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEeeC--CCCHHHHH
Confidence 37999999998643 33 478999874 78999999999996654 7799999999997777642 34444332
Q ss_pred cc---CC-------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccccccccc
Q 017434 122 ST---GP-------GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT--PRLGRREADIKNRFVLPPHLTLKNYEG 189 (371)
Q Consensus 122 ~~---~~-------~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~--p~~g~r~~d~~~~~~~p~~~~~~~~~~ 189 (371)
+. .. .+.. + .......+.++...+.++..+.|+-+. +..--..+|++.. +.......+..
T Consensus 84 ~~l~~VKv~~iMi~~pvt--v---~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~~~~~V~diMt 155 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVT--L---SPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---DRFTQVRDVMS 155 (479)
T ss_pred HHHhhcccccccccCCeE--E---CCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---ccCCCHHHhcc
Confidence 21 11 1111 1 122234456666666777766663211 1100112333210 00000000000
Q ss_pred cccCCCCC-CCcchhhhHhhhh-------cc--c----CCCHHHHHHHHhhcCCCE-------EEEE---c--cCHHHHH
Q 017434 190 LYIGKMDK-TDDSGLASYVANQ-------ID--R----SLNWKDVKWLQTITSLPI-------LVKG---V--LTAEDAS 243 (371)
Q Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~-------~~--~----~~~~~~i~~ir~~~~~pv-------~vK~---v--~~~e~a~ 243 (371)
........ .....+...+... .+ . -++..+|......- |. .+.. + ...+.++
T Consensus 156 ~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~--~~~~~~g~l~V~aav~~~~~~~~~a~ 233 (479)
T PRK07807 156 TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT--PAVDAAGRLRVAAAVGINGDVAAKAR 233 (479)
T ss_pred CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC--chhhhhhccchHhhhccChhHHHHHH
Confidence 00000000 0000000000000 00 0 01222222221110 11 0110 0 1135578
Q ss_pred HHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 244 LAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 244 ~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
.+.++|+|.|.+...-|. +...++.+++|++.++ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 234 ~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 234 ALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 889999999999753332 3557788999998875 577776 89999999999999999998744
No 340
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.47 E-value=0.087 Score=48.68 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=32.9
Q ss_pred CHHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEe
Q 017434 216 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs 256 (371)
+...++.+++..++||+|- |+.++.+|..++|.|+|+|-+.
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 4567899999999999987 5689999999999999999874
No 341
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.46 E-value=0.82 Score=44.89 Aligned_cols=127 Identities=22% Similarity=0.317 Sum_probs=74.2
Q ss_pred HHHHHHHHhhcCCCEEEEEcc--CHHH----HHHHHHhCCCEEEEeCCCCcCCCC-cc--chHHHHHHHHHHhcCCCcEE
Q 017434 217 WKDVKWLQTITSLPILVKGVL--TAED----ASLAIQYGAAGIIVSNHGARQLDY-VP--ATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v~--~~e~----a~~a~~~Gad~I~vs~~gg~~~~~-~~--~~~~~l~~i~~~~~~~i~vi 287 (371)
...++++- .++.||++|-.+ +.++ ++.....|-+-+.+--.|.+.... .. ..+..++.+++.. ..|||
T Consensus 190 ~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPVi 266 (335)
T PRK08673 190 FDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPVI 266 (335)
T ss_pred HHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCEE
Confidence 34455554 468999999653 5666 445566788777775555544322 12 2455677777655 58999
Q ss_pred EecCCCCH------HHHHHHHHcCCCEEEEchhHHHhhh-cCChHHH-HHHHHHHHHHHHHHHHHhC
Q 017434 288 LDGGVRRG------TDVFKALALGASGVFVGRPVPFSLA-VDGEAGV-RKVLQMLRDEFELTMALSG 346 (371)
Q Consensus 288 a~GGI~~~------~dv~kal~lGAd~V~iGr~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G 346 (371)
++.+=..+ .-...|+++|||+++|-..+--.-+ +.|...+ -+-+..|.++++..-..+|
T Consensus 267 ~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 267 VDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 87654444 4557788899999999885432111 2332110 0123455555555544444
No 342
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.45 E-value=0.13 Score=53.23 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+-++.+.++|+|.|.|.+.-|. ....++.+..+++..+++++ +..|.|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 4578899999999998643221 12246778888887743344 44588999999999999999999884
No 343
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=95.41 E-value=0.21 Score=48.54 Aligned_cols=88 Identities=10% Similarity=0.275 Sum_probs=61.7
Q ss_pred CceEEEEeec-CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhh
Q 017434 126 GIRFFQLYVT-KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (371)
Q Consensus 126 ~~~~~QLy~~-~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (371)
-|.++.+-.. .+.+...++++.++++|++.|.|+-.+.. +++
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y---------------------------- 176 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY---------------------------- 176 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC----------------------------
Confidence 4677776443 23344678889999999999877532110 000
Q ss_pred hHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHH-HhCCCEEEEe
Q 017434 205 SYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAI-QYGAAGIIVS 256 (371)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~-~~Gad~I~vs 256 (371)
.-+...|+.++++++.+++||+.=| +.++++++.++ +.|+|+|.++
T Consensus 177 ------~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 ------RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred ------CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 0123478999999999999988665 57999999877 5889999984
No 344
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.40 E-value=0.18 Score=48.01 Aligned_cols=92 Identities=25% Similarity=0.367 Sum_probs=59.9
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-.. -..+.+..+++.+.+++||++.-|-.+..+.++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 35567889999998766443211111 123456666676666899988766656665554 3347999999999998
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.+++..+.+
T Consensus 104 ~~~---~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NKP---SQEGIVAHFKAVAD 120 (281)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 752 45666555555544
No 345
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.39 E-value=0.097 Score=49.09 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~ 315 (371)
+-|+...+.||.+|.|-.-+. .-..+++.|..+++.+ ++||+.-..|-+..++.++..+|||+|.+=-.+
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 457888999999999865321 1123567888888887 799999999999999999999999999765443
No 346
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.38 E-value=0.084 Score=48.73 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHH--cCCCEEEEchhHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALA--LGASGVFVGRPVP 316 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~--lGAd~V~iGr~~l 316 (371)
+.|+...+.|+|.+++..--+. .+.+...+.+.++.+. +|+...||||+.+|+.+++. .||+-|.+|+..+
T Consensus 40 ~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 40 DAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 5577788999999998643222 1345677888888774 58999999999999999865 2699999999654
No 347
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.38 E-value=0.099 Score=48.85 Aligned_cols=41 Identities=24% Similarity=0.563 Sum_probs=36.0
Q ss_pred CHHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEe
Q 017434 216 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs 256 (371)
+...|+.+++..++||++- |+.+++|+..++|.|+|++-+.
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 5577899999999999987 5789999999999999999774
No 348
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.38 E-value=0.15 Score=49.44 Aligned_cols=92 Identities=23% Similarity=0.322 Sum_probs=58.9
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH----HcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL----ALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal----~lGAd~V~iGr~~l 316 (371)
++.+++.|+++|.+.++.|-...-.. -..+.+..+++.+.+++|||+.-|=.+..|+++.. ++|||+|++-.|++
T Consensus 35 v~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 35 VERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred HHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 35567899999999765432111111 12344556666677789999866655666666533 37999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.++++.+.+
T Consensus 115 ~~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 115 LPL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CCC---CHHHHHHHHHHHHH
Confidence 653 35666555555544
No 349
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=95.37 E-value=0.068 Score=49.16 Aligned_cols=97 Identities=20% Similarity=0.141 Sum_probs=54.2
Q ss_pred cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 237 LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 237 ~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.++++...+.|.+-+++.-.--.+.++.......+..+++..+.+..+.++|||+ ++.+-+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~-~~~~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLV-VEDLKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCC-HhhHHHHhcCCCCEEEECCccc
Confidence 344556555666655554421111113333333444555555543345699999999 3434344456999999999954
Q ss_pred HhhhcCChHHHHHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRDEFEL 340 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~el~~ 340 (371)
.+ +-..+.++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 32 1234566666666643
No 350
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.36 E-value=0.16 Score=49.51 Aligned_cols=66 Identities=21% Similarity=0.139 Sum_probs=50.2
Q ss_pred HHHHHHHH--hCCCEEEEeC-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQ--YGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~--~Gad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+-+..+.+ +|+|.|++.. ||- ....++.++.+++.++ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh-----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY-----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 34666777 5999999975 332 2346778899988875 577665 99999999999999999997544
No 351
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.91 Score=40.77 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHH
Q 017434 273 LEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFEL 340 (371)
Q Consensus 273 l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~ 340 (371)
+..+++.. .+..|=.|||+. ++.+-++.++||+.+..|++++.+ + --.++|..|+++...
T Consensus 160 V~~lR~ky-p~l~ievDGGv~-~~ti~~~a~AGAN~iVaGsavf~a----~--d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 160 VEWLREKY-PNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGA----A--DPSDVISLLRNSVEK 219 (224)
T ss_pred HHHHHHhC-CCceEEecCCcC-cchHHHHHHcCCCEEEecceeecC----C--CHHHHHHHHHHHHhh
Confidence 33344333 256677999997 899999999999999999988743 1 123567777776654
No 352
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.29 E-value=0.22 Score=48.56 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=57.6
Q ss_pred CCEEEEEccCHHH---HHHHHHhC--CCEEEEeC-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHH
Q 017434 229 LPILVKGVLTAED---ASLAIQYG--AAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKAL 302 (371)
Q Consensus 229 ~pv~vK~v~~~e~---a~~a~~~G--ad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal 302 (371)
+++.+-...++++ +..+.++| +|.|++.. ||- ....++.++.+++.. ..|++..|.|-+.+++..++
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~-----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~ 155 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH-----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELE 155 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc-----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHH
Confidence 3443333345544 66778989 79999875 442 244667788888877 56888889999999999999
Q ss_pred HcCCCEEEEc
Q 017434 303 ALGASGVFVG 312 (371)
Q Consensus 303 ~lGAd~V~iG 312 (371)
.+|||+|-+|
T Consensus 156 ~aGad~I~V~ 165 (321)
T TIGR01306 156 NAGADATKVG 165 (321)
T ss_pred HcCcCEEEEC
Confidence 9999999877
No 353
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.18 E-value=0.21 Score=48.31 Aligned_cols=92 Identities=25% Similarity=0.363 Sum_probs=58.1
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVF----KALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~----kal~lGAd~V~iGr~~l 316 (371)
++.+++.|+|+|.+-++.|-...-.. -..+.+..+++.+.+++|||+--|=.+-.+++ .+-.+|||++++-.|++
T Consensus 31 v~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred HHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 35678899999999765442111111 12345666677777789998855555445544 33448999999999998
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++|+.+.+..+.+
T Consensus 111 ~k~---~~~gl~~hf~~ia~ 127 (299)
T COG0329 111 NKP---SQEGLYAHFKAIAE 127 (299)
T ss_pred cCC---ChHHHHHHHHHHHH
Confidence 753 34555444444443
No 354
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.16 E-value=2.9 Score=39.43 Aligned_cols=93 Identities=24% Similarity=0.373 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCCCEEEEEc--cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCcc-c--hHHHHHHHHHHhcCCCcEE
Q 017434 217 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDYVP-A--TVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v--~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~-~--~~~~l~~i~~~~~~~i~vi 287 (371)
.+.++++- +.+.||++|-. .|.|+ |+..+..|-..|++--+|=|+.+... - ++.+++-+++.. ..|||
T Consensus 142 F~LLke~G-~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPVi 218 (286)
T COG2876 142 FALLKEVG-RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPVI 218 (286)
T ss_pred hHHHHHhc-ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCEE
Confidence 34444443 34899999964 46665 67778889999998777766554432 2 455677776654 68999
Q ss_pred EecC----CCCHHH--HHHHHHcCCCEEEEc
Q 017434 288 LDGG----VRRGTD--VFKALALGASGVFVG 312 (371)
Q Consensus 288 a~GG----I~~~~d--v~kal~lGAd~V~iG 312 (371)
+|=- =|+.-. +..+++.|||++|+-
T Consensus 219 vDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 219 VDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred ECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9742 222222 335677899999985
No 355
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.14 E-value=0.1 Score=53.65 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=131.3
Q ss_pred hccccceeeccccC-CC-CCCccceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh
Q 017434 44 NAFSRILFRPRILR-DV-SKIDMTTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (371)
Q Consensus 44 ~~~~~~~l~pr~l~-~~-~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~ 121 (371)
..||++.|+|.... .. +++|++|. +..+++.||+-|||--.+ |-.||.+.++.|...++.. +.++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeeccc-ccCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 37999999998642 33 47899988 457899999999996544 8899999999998888854 56666543
Q ss_pred ccC------C----CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC-CCc-chhHHhhhhcCCCCccccccccc
Q 017434 122 STG------P----GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTP-RLG-RREADIKNRFVLPPHLTLKNYEG 189 (371)
Q Consensus 122 ~~~------~----~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p-~~g-~r~~d~~~~~~~p~~~~~~~~~~ 189 (371)
+.. + .+ +.+.+ ...+.+.++...+.+...+.++ |.- ..| ...+|++.. +.......+..
T Consensus 83 e~v~~VKv~eim~~~p--vtv~p---~~tI~eA~~lm~~~~~~~~vVv-D~gklvGIVT~rDL~~~---~~~~~V~dIMt 153 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTP--ITLAP---HDTVSDAMALIHKRAHGAAVVI-LEDRPVGLVTDSDLLGV---DRFTQVRDIMS 153 (475)
T ss_pred HHHhhcchhhccccCC--eEECC---CCCHHHHHHHHHhcCCeEEEEE-ECCEEEEEEEHHHhhcC---CCCCCHHHHcc
Confidence 311 1 12 12222 2233455566666676655543 310 001 112332210 00000000000
Q ss_pred cccCCCCC-CCcchhhhHhhhh-------cc--c----CCCHHHHHHHHhhcCC-----CEEEE---Ec--cCHHHHHHH
Q 017434 190 LYIGKMDK-TDDSGLASYVANQ-------ID--R----SLNWKDVKWLQTITSL-----PILVK---GV--LTAEDASLA 245 (371)
Q Consensus 190 ~~~~~~~~-~~~~~~~~~~~~~-------~~--~----~~~~~~i~~ir~~~~~-----pv~vK---~v--~~~e~a~~a 245 (371)
........ .....+...+... .+ . -.+..+|......-.. -+.+. ++ ...+-++.+
T Consensus 154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~L 233 (475)
T TIGR01303 154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKAL 233 (475)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHH
Confidence 00000000 0000000000000 00 0 0122232222221100 00111 11 123557889
Q ss_pred HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 246 IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 246 ~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
.++|+|.|++...-|+. ....+.++.|++..+ ++|||+ |.+.|.+.+..++.+|||+|-+|-
T Consensus 234 v~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 234 LDAGVDVLVIDTAHGHQ----VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred HHhCCCEEEEeCCCCCc----HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEEECC
Confidence 99999999997533431 446677888887664 699999 779999999999999999987653
No 356
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=95.13 E-value=1.8 Score=40.87 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=65.2
Q ss_pred HHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeC-----CCCcCC-CC-----ccchHHHHHHHHHHh---cCCC
Q 017434 219 DVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-----HGARQL-DY-----VPATVMALEEVVQAA---KGRV 284 (371)
Q Consensus 219 ~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~-----~gg~~~-~~-----~~~~~~~l~~i~~~~---~~~i 284 (371)
-++.+.+. ++++.+=.+.+++.+..+.++|+++|...- ++..++ +. +.+.+..+.++.+.+ ..+.
T Consensus 131 A~~~L~~~-GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 131 AIKDLIAA-GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred HHHHHHHC-CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 34445443 889888889999999999999999998742 121111 00 114455555555443 2255
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 285 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 285 ~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
.|++ ..+++..++.+++ |+|.|-+.-.++..+
T Consensus 210 kiL~-AS~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 210 RVLW-ASFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred eEEE-EeeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 6655 4599999998765 999999988777654
No 357
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.13 E-value=3.3 Score=39.78 Aligned_cols=107 Identities=15% Similarity=0.236 Sum_probs=73.2
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccc--hHHHHHHHHHHhcCCCcEEEecCCCC-HHHHHHHHHcCCCEE
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVPA--TVMALEEVVQAAKGRVPVFLDGGVRR-GTDVFKALALGASGV 309 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~i~via~GGI~~-~~dv~kal~lGAd~V 309 (371)
.+|++|+... +.|+|.+-++. ||.+ .+.| .++.|.+|++.+ ++|+..=||=.. .+++.+++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4688887765 67999999874 5543 3333 677899999888 799988885443 466778999999999
Q ss_pred EEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 310 FVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 310 ~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
-+++-+..+... .. ..-.....+.+++..+..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999976543210 00 1223344566677777777777753
No 358
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=95.12 E-value=0.5 Score=44.62 Aligned_cols=199 Identities=22% Similarity=0.226 Sum_probs=100.9
Q ss_pred chhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccc-------cccccCChHhHHH
Q 017434 24 MVYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTA-------FQKMAHPEGECAT 96 (371)
Q Consensus 24 ~~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~-------~~~~~~~~~e~~~ 96 (371)
..-.|+--|-.|..|..+-..++.+-. +| .--+|.++|-|+.=.|+= ...=.+.+.-+.+
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~G-----------ad--~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~ 77 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAG-----------AD--ALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFEL 77 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcC-----------CC--EEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHH
Confidence 345566666665555444433332211 11 112588888887766641 0000111223466
Q ss_pred HHHHHH--cCCcEEecCCCC----CCHHH----HhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEE-EEecCCCCC
Q 017434 97 ARAASA--AGTIMTLSSWAT----SSVEE----VSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAI-ALTVDTPRL 165 (371)
Q Consensus 97 a~aa~~--~G~~~~~s~~~~----~~~ee----i~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al-~vtvd~p~~ 165 (371)
.+..++ ..+|..+=++.+ ..+++ .+++... .+ +.+.-..+...+.++++++.|.+.+ .++..+|.
T Consensus 78 v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvd--gv-iipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~- 153 (256)
T TIGR00262 78 LKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVD--GV-LVADLPLEESGDLVEAAKKHGVKPIFLVAPNADD- 153 (256)
T ss_pred HHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCC--EE-EECCCChHHHHHHHHHHHHCCCcEEEEECCCCCH-
Confidence 666664 466754322222 13343 2222211 11 1222334566788889999998865 55544432
Q ss_pred cchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHH
Q 017434 166 GRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASL 244 (371)
Q Consensus 166 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~ 244 (371)
.|...+...- + +.. .+... ....|.. ... .+-..+.++++|+.++.|+.+.+ +.++++++.
T Consensus 154 -eri~~i~~~~--~-gfi--y~vs~-------~G~TG~~----~~~-~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~ 215 (256)
T TIGR00262 154 -ERLKQIAEKS--Q-GFV--YLVSR-------AGVTGAR----NRA-ASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ 215 (256)
T ss_pred -HHHHHHHHhC--C-CCE--EEEEC-------CCCCCCc----ccC-ChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH
Confidence 2332222110 0 000 00000 0000000 001 12245779999999899999986 467999999
Q ss_pred HHHhCCCEEEEeC
Q 017434 245 AIQYGAAGIIVSN 257 (371)
Q Consensus 245 a~~~Gad~I~vs~ 257 (371)
+.++|+|++++..
T Consensus 216 ~~~~GADgvVvGS 228 (256)
T TIGR00262 216 AIDAGADGVIVGS 228 (256)
T ss_pred HHHcCCCEEEECH
Confidence 9999999999853
No 359
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.07 E-value=3.2 Score=39.44 Aligned_cols=182 Identities=19% Similarity=0.158 Sum_probs=106.0
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 140 (371)
.|..+.|+.-.+-.+.++-....+-+.+.|+...+ ++ +.+.+.+|-. +... .+.++++-. .+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHH
Confidence 35667777544445555556788888888975443 22 2344555432 2222 356666643 46677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.|+++|++++.+.. |.. + +. ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~--P~~----------~--~~-------------------------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVVT--PYY----------N--KP-------------------------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcc--ccc----------C--CC-------------------------------CHHHHHHHH
Confidence 78899999999999998741 221 0 00 001123456
Q ss_pred HHHHhhcCCCEEEEEc-------cCHHHHHHHHHh-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017434 221 KWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 292 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v-------~~~e~a~~a~~~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI 292 (371)
+.+.+.+++|+++=.. .+++..+++.+. .+-+|+-+. .+...+.++....++++.|+. |.
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G~- 186 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVLS-GD- 186 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEe-CC-
Confidence 6666667889887653 466777776654 233333221 123444555555544554443 31
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
...+...+.+|+++.+.|...+
T Consensus 187 --d~~~~~~~~~G~~G~~s~~~n~ 208 (284)
T cd00950 187 --DALTLPFLALGGVGVISVAANV 208 (284)
T ss_pred --hHhHHHHHHCCCCEEEehHHHh
Confidence 3456778889999999888644
No 360
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=95.07 E-value=0.26 Score=46.96 Aligned_cols=94 Identities=23% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHHhhcCCCEEEEE---ccCHHHHHHHHHhC-CCEEEEeCCCCcCCCCccchHHHHHHHHHHh----cCCCcEEEe
Q 017434 218 KDVKWLQTITSLPILVKG---VLTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAA----KGRVPVFLD 289 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~---v~~~e~a~~a~~~G-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~----~~~i~via~ 289 (371)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|.+.+.+..++ .+....+ +...++ ..++.++++
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~i~~S 245 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEEL---DPAVLIL-KARAHLDGKGLPRVKIEAS 245 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHHH---HHHHHHH-HHHHhhhhcCCCceEEEEe
Confidence 457777776543344453 25688899999999 99998876432110 1111111 111111 136789999
Q ss_pred cCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 290 GGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 290 GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
|||. .+.+..+...|.|.+++|+.+.
T Consensus 246 ggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 246 GGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9997 8888888889999999999775
No 361
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.08 Score=48.23 Aligned_cols=80 Identities=26% Similarity=0.249 Sum_probs=56.7
Q ss_pred CHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.|+.+++..+ .-+-...++++++++.+.++|++.|+-=| -+.+.+..+.+ .++|++- |+.|
T Consensus 51 a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~----------~~~ev~~~a~~---~~ip~~P--G~~T 115 (211)
T COG0800 51 ALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPG----------LNPEVAKAANR---YGIPYIP--GVAT 115 (211)
T ss_pred HHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHh---CCCcccC--CCCC
Confidence 4577999999875 22333347899999999999999985311 12223332222 2677776 9999
Q ss_pred HHHHHHHHHcCCCEEE
Q 017434 295 GTDVFKALALGASGVF 310 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~ 310 (371)
+.++..++++|++.+=
T Consensus 116 ptEi~~Ale~G~~~lK 131 (211)
T COG0800 116 PTEIMAALELGASALK 131 (211)
T ss_pred HHHHHHHHHcChhhee
Confidence 9999999999998763
No 362
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.05 E-value=3.1 Score=41.06 Aligned_cols=112 Identities=10% Similarity=0.204 Sum_probs=76.8
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCC---------------
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVR--------------- 293 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~via~GGI~--------------- 293 (371)
.+|++|+..+ +.|+|.+-++. ||-+.....| -.++.|.+|++.++ ++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887655 68999999874 5543211112 35678999998873 58998888643
Q ss_pred -------CHHHHHHHHHcCCCEEEEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017434 294 -------RGTDVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCRS 349 (371)
Q Consensus 294 -------~~~dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 349 (371)
..+++.|++.+|..-|-+++-+..+... .. ..-.....+.+++.++..|..+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3478999999999999999976543221 00 12233445677888888899988653
No 363
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.45 Score=43.81 Aligned_cols=123 Identities=19% Similarity=0.304 Sum_probs=80.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcc
Q 017434 133 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 212 (371)
Q Consensus 133 y~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (371)
|...+.+.+.+=++.++++|++.+++..-+ .|
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt------------------------------------------------~d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALT------------------------------------------------AD 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeec------------------------------------------------CC
Confidence 433344577888899999999999864311 12
Q ss_pred cCCCHHHHHHHHhhc-CCCEEEEEc----cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE
Q 017434 213 RSLNWKDVKWLQTIT-SLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~-~~pv~vK~v----~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v 286 (371)
..++.+.++.+.+.. ++++.+-.. .++.+ .+++.+.|+..|-.| ||. ....-....|+++.+...+++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 334556677777665 677776543 34444 578999999998774 333 12233445566666666678999
Q ss_pred EEecCCCCHHHHHHH-HHcCCCE
Q 017434 287 FLDGGVRRGTDVFKA-LALGASG 308 (371)
Q Consensus 287 ia~GGI~~~~dv~ka-l~lGAd~ 308 (371)
++-|||+ ++.+... ..+|+.-
T Consensus 175 m~GaGV~-~~N~~~l~~~tg~~e 196 (241)
T COG3142 175 MAGAGVR-AENIAELVLLTGVTE 196 (241)
T ss_pred EeCCCCC-HHHHHHHHHhcCchh
Confidence 9999997 7888777 4467543
No 364
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.01 E-value=3.1 Score=41.11 Aligned_cols=212 Identities=15% Similarity=0.127 Sum_probs=108.0
Q ss_pred ceeecC-cccCcceeecccccccccCChH---h--HHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCCh
Q 017434 65 TTTVLG-FNISMPIMIAPTAFQKMAHPEG---E--CATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHR 138 (371)
Q Consensus 65 s~~i~G-~~~~~Pi~iAPm~~~~~~~~~~---e--~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~ 138 (371)
..+|.+ .++++-|+.|||+.. ....+| + +..-+.-++ |+.+++++....+.+. ...+ ...-+|.....
T Consensus 4 P~~ig~g~~lkNRiv~apm~~~-~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~~--~~~~--~~~~~~~d~~i 77 (353)
T cd04735 4 PFTLKNGVTLKNRFVMAPMTTY-SSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPSG--IGFE--GGFSADDDSDI 77 (353)
T ss_pred CEEcCCCeEEeCcceecccccC-ccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECccc--CcCC--CCceecChhhh
Confidence 457777 999999999999632 222222 2 222222222 4666665533222110 1111 11224444445
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhH-HhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCH
Q 017434 139 NVDAQLVKRAERAGFKAIALTVDTPRLGRREA-DIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNW 217 (371)
Q Consensus 139 ~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~-d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (371)
+.++++++.+++.|++.+ +-+..+ |.... +...+ +..+.+..+ . .. .........++.
T Consensus 78 ~~~~~l~~~vh~~G~~i~-~QL~h~--G~~~~~~~~~~---~~~~~ps~~-----------~-~~---~~~~~~p~~mt~ 136 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAI-LQIFHA--GRMANPALVPG---GDVVSPSAI-----------A-AF---RPGAHTPRELTH 136 (353)
T ss_pred HHHHHHHHHHHhCCCeEE-EEecCC--CCCCCccccCC---CceecCCCC-----------c-cc---CCCCCCCccCCH
Confidence 678889999999998754 444332 21100 00000 000000000 0 00 000001134677
Q ss_pred HHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeC-CCCc------------CCCCccc-------hHHHHHHHH
Q 017434 218 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN-HGAR------------QLDYVPA-------TVMALEEVV 277 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~-~gg~------------~~~~~~~-------~~~~l~~i~ 277 (371)
++|+++.+.+ .+-|++|.++|+|+|.++. ||.- ...+|.+ ..+.+..|+
T Consensus 137 ~eI~~ii~~f-----------~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr 205 (353)
T cd04735 137 EEIEDIIDAF-----------GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQ 205 (353)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 8888887753 3678999999999999964 3220 1112222 345667777
Q ss_pred HHhc----CCCcEEE--------ecCCCCHH---HHHHHHH-cCCCEEEEchhH
Q 017434 278 QAAK----GRVPVFL--------DGGVRRGT---DVFKALA-LGASGVFVGRPV 315 (371)
Q Consensus 278 ~~~~----~~i~via--------~GGI~~~~---dv~kal~-lGAd~V~iGr~~ 315 (371)
++++ .+.+|.. .||+. .+ ++++.|+ .|+|.+-+....
T Consensus 206 ~~vg~~~~~~~~v~~R~s~~~~~~~g~~-~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 206 EVIDKHADKDFILGYRFSPEEPEEPGIR-MEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred HHhccccCCCceEEEEECcccccCCCCC-HHHHHHHHHHHHHcCCCEEEeccCc
Confidence 7765 3445432 45654 34 4456665 699999987643
No 365
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.99 E-value=0.33 Score=47.58 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCEEEEEc-cCHH----HHHHHHHhCCCEEEEeCC---CCcCCCCc-c--chHHHHHHHHHHhcCCCcE
Q 017434 218 KDVKWLQTITSLPILVKGV-LTAE----DASLAIQYGAAGIIVSNH---GARQLDYV-P--ATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v-~~~e----~a~~a~~~Gad~I~vs~~---gg~~~~~~-~--~~~~~l~~i~~~~~~~i~v 286 (371)
+.++.+++..+.|++++.. .+.+ .++.+.++|+|+|.+.-. +.....+. . ..++.+..+++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566676667899999985 3443 367778899999999421 11111111 1 1234566666655 6898
Q ss_pred EEe--cCCCCHHHHHHHHH-cCCCEEEEch
Q 017434 287 FLD--GGVRRGTDVFKALA-LGASGVFVGR 313 (371)
Q Consensus 287 ia~--GGI~~~~dv~kal~-lGAd~V~iGr 313 (371)
++- +++.+..++.+++. .|+|+|.+..
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 866 45556678888765 8999987744
No 366
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.28 Score=45.27 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEe
Q 017434 216 NWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs 256 (371)
+...++-++++.++||+|- |+.++.+|..++|.|+|+|-+.
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 5577899999999999987 5788999999999999999774
No 367
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.98 E-value=2.4 Score=39.63 Aligned_cols=187 Identities=20% Similarity=0.156 Sum_probs=103.4
Q ss_pred eeecccccccccCChHhHHHHHHHHHcCCcEEecCCC------------CCCHHHHhc-------cCCCceEEEE-eecC
Q 017434 77 IMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA------------TSSVEEVSS-------TGPGIRFFQL-YVTK 136 (371)
Q Consensus 77 i~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~------------~~~~eei~~-------~~~~~~~~QL-y~~~ 136 (371)
.++.|..+ |...|+.+.+.|...+..+.+ ..+++|+.. ....|...-+ .++.
T Consensus 10 ~i~~~~~~--------D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g 81 (243)
T cd00377 10 PLVLPGAW--------DALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG 81 (243)
T ss_pred cEEecCCC--------CHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC
Confidence 45566543 558999999999887753321 124455432 2223433322 1223
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
+.+...+.+++..++|+.++.+. |.. .|++... ... ...+ ..+..
T Consensus 82 ~~~~~~~~v~~~~~~G~~gv~iE-D~~--------------~~k~~g~--~~~--------------~~~~----~~ee~ 126 (243)
T cd00377 82 NALNVARTVRELEEAGAAGIHIE-DQV--------------GPKKCGH--HGG--------------KVLV----PIEEF 126 (243)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEe-cCC--------------CCccccC--CCC--------------Ceec----CHHHH
Confidence 66677788888888999988763 211 1111000 000 0000 11112
Q ss_pred HHHHHHHHhhc----CCCEEEEE----c--cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcC
Q 017434 217 WKDVKWLQTIT----SLPILVKG----V--LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG 282 (371)
Q Consensus 217 ~~~i~~ir~~~----~~pv~vK~----v--~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 282 (371)
.+.|+..++.. +.+|+... . ...++ ++.+.++|||.|.+.. +.+.+.+.++.+..
T Consensus 127 ~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~---------~~~~~~~~~~~~~~-- 195 (243)
T cd00377 127 VAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEG---------LKDPEEIRAFAEAP-- 195 (243)
T ss_pred HHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCC---------CCCHHHHHHHHhcC--
Confidence 23455555544 35555551 1 23343 6778999999999832 33567777777775
Q ss_pred CCcEEEe--cCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 283 RVPVFLD--GGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 283 ~i~via~--GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
+.||++. .+-. .-.+...-++|.+.|.+|...+++
T Consensus 196 ~~Pl~~~~~~~~~-~~~~~~l~~lG~~~v~~~~~~~~~ 232 (243)
T cd00377 196 DVPLNVNMTPGGN-LLTVAELAELGVRRVSYGLALLRA 232 (243)
T ss_pred CCCEEEEecCCCC-CCCHHHHHHCCCeEEEEChHHHHH
Confidence 5676654 2221 023444446899999999877654
No 368
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=94.95 E-value=0.26 Score=47.32 Aligned_cols=92 Identities=11% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHhC-CCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhH
Q 017434 242 ASLAIQYG-AAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 315 (371)
Q Consensus 242 a~~a~~~G-ad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~ 315 (371)
++.+++.| +++|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 45677899 9999997654421111111 23345556666667899987644344555553 334799999999998
Q ss_pred HHhhhcCChHHHHHHHHHHHH
Q 017434 316 PFSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 316 l~~~~~~G~~gv~~~l~~l~~ 336 (371)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~yf~~v~~ 124 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTIIA 124 (290)
T ss_pred CCCC---CHHHHHHHHHHHHh
Confidence 8753 34555555555543
No 369
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.94 E-value=0.52 Score=44.57 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=34.8
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
..+.++.+|+.++.|+++.. +.++++++.+.+. ||+++|.+
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34679999998899999985 5789999999986 99999954
No 370
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=94.94 E-value=1.1 Score=42.27 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (371)
.+++.+.+.+++..+.|++++-+.++. ++..
T Consensus 84 ~~~~~~~~~~~~~~~~G~~~~KiKvg~-------------------------------------------------~~~~ 114 (265)
T cd03315 84 GEPAEVAEEARRALEAGFRTFKLKVGR-------------------------------------------------DPAR 114 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCC-------------------------------------------------CHHH
Confidence 466767777777888899988665421 0112
Q ss_pred CHHHHHHHHhhc--CCCEEEEEc--cCHHHH----HHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 216 NWKDVKWLQTIT--SLPILVKGV--LTAEDA----SLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 216 ~~~~i~~ir~~~--~~pv~vK~v--~~~e~a----~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
+.+.++.+|+.+ +.++.+..- .+.+++ +.+.+.|++.|--- ..+..++.+.++++.. ++||+
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 346688888876 345655532 455554 45566777777421 1123467777887776 79999
Q ss_pred EecCCCCHHHHHHHHHcC-CCEEEEc
Q 017434 288 LDGGVRRGTDVFKALALG-ASGVFVG 312 (371)
Q Consensus 288 a~GGI~~~~dv~kal~lG-Ad~V~iG 312 (371)
+++.+.+..|+.+++..+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 8888875
No 371
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.92 E-value=0.63 Score=45.61 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=82.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
++|-+...++++.|.++|++++=+-.-. ...+- .+.... .. +.....+ .+...-+.+. .-.
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt~~------~~~~~----~~~~~~-~~---~~~~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQTFK------AEDLV----SKNAPK-AE---YQKINTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeeeCC------HHHhh----Cccccc-cc---ccccCCc--CCCcHHHHHH---HhC
Confidence 4688889999999999999988653211 11110 010000 00 0000000 0001111221 233
Q ss_pred CCHHHHH---HHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 215 LNWKDVK---WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 215 ~~~~~i~---~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
+.++..+ ..++..+++++ =..++.+.+..+.+.|++.+.|... -...+..|..+++. ..|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~~---gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFL-STPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIARF---GKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 5555544 44455578876 3457788899999999999999532 12345667666553 689999999
Q ss_pred CCCHHHHHHHHH
Q 017434 292 VRRGTDVFKALA 303 (371)
Q Consensus 292 I~~~~dv~kal~ 303 (371)
..+.+++..++.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999998876
No 372
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.92 E-value=3.1 Score=40.14 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=45.7
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcE---EEecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPV---FLDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~v---ia~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
++...++|||.|.+. ++.+.+.+..+.+.++ .|+ +..||-...-.+.+.-++|.+.|..+..++++
T Consensus 171 a~aY~eAGAD~ifi~---------~~~~~~ei~~~~~~~~--~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~a 239 (294)
T TIGR02319 171 SREYVAAGADCIFLE---------AMLDVEEMKRVRDEID--APLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMA 239 (294)
T ss_pred HHHHHHhCCCEEEec---------CCCCHHHHHHHHHhcC--CCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHH
Confidence 466789999999883 2456677888888774 454 44444322234556667899999999887765
No 373
>TIGR03586 PseI pseudaminic acid synthase.
Probab=94.91 E-value=4.2 Score=39.87 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=67.8
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cCHHHHH----HHHHhCCCEEEEeCCCCcCCCC--ccchHHHHHHHHHHhcCCCcEEE
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LTAEDAS----LAIQYGAAGIIVSNHGARQLDY--VPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~~e~a~----~a~~~Gad~I~vs~~gg~~~~~--~~~~~~~l~~i~~~~~~~i~via 288 (371)
.+..++.+.+ ++.||++|.. .+.++.. .+.+.|..-|++- |+-+.... ....+..+..+++.. .+||..
T Consensus 123 n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~ 198 (327)
T TIGR03586 123 DLPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGL 198 (327)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEe
Confidence 4666777765 5899999964 5666643 3446787444431 32211111 122566777777776 589955
Q ss_pred ecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCChHHH----HHHHHHHHHHHHHHHHHhCC
Q 017434 289 DGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV----RKVLQMLRDEFELTMALSGC 347 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~ 347 (371)
+.=-..-.-.+.|+++||+ +|=+.+-..-+..|.+.- -+-+..|.+.++..-..+|.
T Consensus 199 SDHt~G~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~ 259 (327)
T TIGR03586 199 SDHTLGILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGE 259 (327)
T ss_pred eCCCCchHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 5421112334567779998 555544332222232110 01245556666666666664
No 374
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.91 E-value=0.26 Score=47.46 Aligned_cols=92 Identities=22% Similarity=0.340 Sum_probs=58.4
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+|+|.+.++.|-...-... -.+.+..+++.+.+++||++.=|- +-.+.++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 456778999999997654421111111 233455566667778999886663 4555543 3347999999999998
Q ss_pred HhhhcCChHHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRDE 337 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~e 337 (371)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 752 356666665555443
No 375
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.90 E-value=0.21 Score=48.78 Aligned_cols=42 Identities=26% Similarity=0.630 Sum_probs=36.4
Q ss_pred CCHHHHHHHHhhcC-CCEEEEE-ccCHHHHHHHHH-hCCCEEEEe
Q 017434 215 LNWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQ-YGAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~-~pv~vK~-v~~~e~a~~a~~-~Gad~I~vs 256 (371)
..|+.|+++++.++ +||+.=| +.++++++..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9998776 579999998877 579999984
No 376
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=94.88 E-value=0.14 Score=49.25 Aligned_cols=108 Identities=24% Similarity=0.284 Sum_probs=64.2
Q ss_pred cCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcch
Q 017434 123 TGPGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSG 202 (371)
Q Consensus 123 ~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 202 (371)
..+-|.++.+- .+.+...++++.++++|+++|.++-... +.. -+.+.. .|. . .. ... +
T Consensus 155 ~~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~--~~~-~~~~~~--~~~-~--~~---------~~g---g 212 (300)
T TIGR01037 155 KTDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLR--GMK-IDIKTG--KPI-L--AN---------KTG---G 212 (300)
T ss_pred hcCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCC--ccc-cccccC--cee-e--CC---------CCc---c
Confidence 33456777763 3555667888999999999998752211 110 011100 000 0 00 000 0
Q ss_pred hhhHhhhhcccCCCHHHHHHHHhhcCCCEEE-EEccCHHHHHHHHHhCCCEEEEe
Q 017434 203 LASYVANQIDRSLNWKDVKWLQTITSLPILV-KGVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 203 ~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~v-K~v~~~e~a~~a~~~Gad~I~vs 256 (371)
++.....++.++.+.++++.+++||+. .++.+++++.+++++|||+|.+.
T Consensus 213 ----~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 213 ----LSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred ----ccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 000001123457788899988999885 45789999999999999999884
No 377
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.86 E-value=0.13 Score=49.84 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=97.8
Q ss_pred ceeecCcccCcceeecccccccccCChHhHHHHHHHHHcCCcEE-ec--CCC--C------------------------C
Q 017434 65 TTTVLGFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-LS--SWA--T------------------------S 115 (371)
Q Consensus 65 s~~i~G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~-~s--~~~--~------------------------~ 115 (371)
..+|.|++++..+++.---+ |+ .-.+.++....|.-++ ++ ... . +
T Consensus 74 ~~~i~~~~~~sRl~~Gtg~y-----~s-~~~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ 147 (326)
T PRK11840 74 SWTVAGKTFSSRLLVGTGKY-----KD-FEETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCY 147 (326)
T ss_pred CeEECCEEEecceeEecCCC-----CC-HHHHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCC
Confidence 57889999999998865221 11 2356666666676544 11 111 0 1
Q ss_pred CHHH------HhccCCCceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCcc
Q 017434 116 SVEE------VSSTGPGIRFFQLYVTKHRN----VDAQLVKRAERA---GFKAIALTVDTPRLGRREADIKNRFVLPPHL 182 (371)
Q Consensus 116 ~~ee------i~~~~~~~~~~QLy~~~d~~----~~~~~~~~a~~a---G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~ 182 (371)
+-+| +++...+.-|+.|-.-.|+. ...+.+++++.. |+..+.+..|.|...+|..++.-..-.|
T Consensus 148 ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmP--- 224 (326)
T PRK11840 148 TAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMP--- 224 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEee---
Confidence 1111 11111245688875533332 234566666666 9999888999998887777652100001
Q ss_pred ccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEe
Q 017434 183 TLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs 256 (371)
..+..+++. +-.+.+.|+.+++..++||++- |+.+++|+..++|+|+|++-+.
T Consensus 225 ------------l~~pIGsg~---------gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 225 ------------LGAPIGSGL---------GIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred ------------ccccccCCC---------CCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 001111111 1115677888888889999987 5789999999999999999874
No 378
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.83 E-value=4 Score=39.24 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=107.5
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.+|-. +... .|.++++- .+.+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46677777444444555556888888888976543 22 2345665532 2222 46777874 35777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.++++|++++.+. .|.+- + .+ ..-..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y~------------~--~s-----------------------------~~~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYLI------------N--GE-----------------------------QEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC------------C--CC-----------------------------HHHHHHHH
Confidence 7788999999999999873 23210 0 00 00123445
Q ss_pred HHHHhhcCCCEEEEEc----cCHHHHHHHHH-h-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC-
Q 017434 221 KWLQTITSLPILVKGV----LTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR- 293 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v----~~~e~a~~a~~-~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~- 293 (371)
+.+.+.+++|+++=.. .+++...++.+ . .+-+|+-+. .++..+.++.+..+++..|+. |-.
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~--G~~~ 190 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLG--GMPT 190 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEe--CCCc
Confidence 6666777899887542 46777777765 2 344444431 234455555555544444443 322
Q ss_pred CHHHHHHHHHcCCCEEEEchhHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l 316 (371)
....++..+.+||++++.|-.-+
T Consensus 191 ~d~~~~~~~~~Ga~G~is~~~n~ 213 (296)
T TIGR03249 191 AEVTAPAYLPLGVTSYSSAIFNF 213 (296)
T ss_pred chhhHHHHHhCCCCEEEecHHHh
Confidence 13446777889999999887543
No 379
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.80 E-value=3.8 Score=38.85 Aligned_cols=181 Identities=18% Similarity=0.170 Sum_probs=108.7
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCCcEEe--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNVD 141 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 141 (371)
|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ + ++.+.+.+|-. +..+ .+.++++-. .+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHH
Confidence 5567777545445566666888888888876544 2 22345555432 2222 455666643 455567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.++++.++++|++++.+. .|... + . ...-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y~------------~--~-----------------------------~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYYN------------K--P-----------------------------SQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcCC------------C--C-----------------------------CHHHHHHHHH
Confidence 788999999999999873 22210 0 0 0011234566
Q ss_pred HHHhhcCCCEEEEEc-------cCHHHHHHHHHh-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 222 WLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v-------~~~e~a~~a~~~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
.+.+.+++|+++-.. .+++..+++.+. .+-+|+-+. .....+.++.+..++++.|+. | -
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-~- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-G-D- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c-c-
Confidence 777778899998653 467887777752 233333321 234455556555544444443 3 2
Q ss_pred CHHHHHHHHHcCCCEEEEchhHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l 316 (371)
...+...+.+|+++.+.|...+
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n~ 205 (281)
T cd00408 184 -DDLLLPALALGADGAISGAANV 205 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHhh
Confidence 5778888999999999987543
No 380
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.78 E-value=0.19 Score=48.54 Aligned_cols=112 Identities=17% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhh
Q 017434 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (371)
Q Consensus 125 ~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (371)
..|.++.|-+ +.+.+.++++.++++|+++|+++ ++- .+...-|+...-..+ .+..+ +. .+
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~-Nt~-~~~~~id~~~~~~~~-~~~~~------------~~---~g 227 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAI-NTV-NSLMGVDLDGTPPAP-GVEGK------------TT---YG 227 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEe-ccc-ccccccccccCCccc-cccCC------------CC---cC
Confidence 3678888754 44567789999999999998763 221 110000100000000 00000 00 00
Q ss_pred hHhhhhcccCCCHHHHHHHHhhc--CCCEEEE-EccCHHHHHHHHHhCCCEEEEeC
Q 017434 205 SYVANQIDRSLNWKDVKWLQTIT--SLPILVK-GVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~ir~~~--~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.++.....+..|+.|.++++.+ ++||+.= ++.+.+|+.+++.+|||+|.+..
T Consensus 228 -g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 -GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred -cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 0111112334789999999999 7898755 46899999999999999999853
No 381
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.76 E-value=0.14 Score=52.93 Aligned_cols=247 Identities=16% Similarity=0.190 Sum_probs=130.5
Q ss_pred hccccceeecccc-CCCCCCccceeec-CcccCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHh
Q 017434 44 NAFSRILFRPRIL-RDVSKIDMTTTVL-GFNISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVS 121 (371)
Q Consensus 44 ~~~~~~~l~pr~l-~~~~~~d~s~~i~-G~~~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~ 121 (371)
..||++.|+|... ...+++|++|.+- +..+..||+-|||...+ +..++.+.++.|...++.. +.+.++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 3699999999854 3446788888763 56678999999998765 5678888888887777753 34555432
Q ss_pred c-------cCC----CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCcccccccc
Q 017434 122 S-------TGP----GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDT--PRLGRREADIKNRFVLPPHLTLKNYE 188 (371)
Q Consensus 122 ~-------~~~----~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~--p~~g~r~~d~~~~~~~p~~~~~~~~~ 188 (371)
+ ... .+.+ +. ....+.++++...+.++..+.|.=+. +..-...+|++........+ ..+.
T Consensus 81 ~~I~~vk~~~dim~~~~v~--i~---~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V--~dim 153 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVT--VT---PDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPV--SEVM 153 (486)
T ss_pred HHHHHhhhhhhcccCCCeE--eC---CCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcH--HHHc
Confidence 1 111 1222 21 22234456666666777666553110 00001122221100000000 0000
Q ss_pred c-cccCCCCC-CCcchhhhHhhhh-------cc------cCCCHHHHHHHHhh------cCCCEEEEEcc-----CHHHH
Q 017434 189 G-LYIGKMDK-TDDSGLASYVANQ-------ID------RSLNWKDVKWLQTI------TSLPILVKGVL-----TAEDA 242 (371)
Q Consensus 189 ~-~~~~~~~~-~~~~~~~~~~~~~-------~~------~~~~~~~i~~ir~~------~~~pv~vK~v~-----~~e~a 242 (371)
. ........ .....+...+... .+ .-.+.+++...... ....+.+.... +.+.+
T Consensus 154 ~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a 233 (486)
T PRK05567 154 TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERA 233 (486)
T ss_pred CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHH
Confidence 0 00000000 0000000000000 00 00122332221111 01234445432 24678
Q ss_pred HHHHHhCCCEEEEeC-CCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 243 SLAIQYGAAGIIVSN-HGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 243 ~~a~~~Gad~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+.+.++|+|.|++.. ||.. ...++.+..+++..+ ++||++ |+|.|.+++..++.+|||+|-+|
T Consensus 234 ~~L~~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~p-~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 234 EALVEAGVDVLVVDTAHGHS-----EGVLDRVREIKAKYP-DVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHhCCCEEEEECCCCcc-----hhHHHHHHHHHhhCC-CCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 899999999998864 3321 235567777777653 688888 99999999999999999999875
No 382
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.74 E-value=1 Score=42.44 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec-CCCCHHHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG-GVRRGTDVF 299 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G-GI~~~~dv~ 299 (371)
++++.+.++|||.|.+- +++. +...++.+.+ ++|+|.-| |-.+-.+++
T Consensus 162 ~ra~a~~~AGA~~i~lE---------~v~~-~~~~~i~~~v--~iP~igiGaG~~~dgqvl 210 (254)
T cd06557 162 EDALALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIPTIGIGAGPDCDGQVL 210 (254)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCCEEEeccCCCCCceee
Confidence 56788899999999983 2443 6788888888 79999877 444444444
No 383
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=94.73 E-value=0.42 Score=47.02 Aligned_cols=123 Identities=20% Similarity=0.189 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCC
Q 017434 137 HRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLN 216 (371)
Q Consensus 137 d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (371)
+.+.+.+.++++.+.|++++-+.++..... . ....++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------------------------------------~------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------------------------------------G------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------------------------------------h------HHHHHH
Confidence 466677778888889999987765421100 0 001235
Q ss_pred HHHHHHHHhhc--CCCEEEEEc--cCHHHHHHH----HHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEE
Q 017434 217 WKDVKWLQTIT--SLPILVKGV--LTAEDASLA----IQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFL 288 (371)
Q Consensus 217 ~~~i~~ir~~~--~~pv~vK~v--~~~e~a~~a----~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via 288 (371)
.+.++.+|+.+ +.++.+..- .+.+++... .+.+++.|-= ...+..++.+.++++.. ++||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEe
Confidence 67789999887 467777642 466666443 3445544421 11123567778888776 799999
Q ss_pred ecCCCCHHHHHHHHHcC-CCEEEEc
Q 017434 289 DGGVRRGTDVFKALALG-ASGVFVG 312 (371)
Q Consensus 289 ~GGI~~~~dv~kal~lG-Ad~V~iG 312 (371)
+..+.+..|+.+++..| +|.|.+-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999977 8888764
No 384
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.73 E-value=0.35 Score=46.36 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=86.2
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEE-e--cCCC-C-------CC-------HHHHhccCCCceEEEEeec
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-L--SSWA-T-------SS-------VEEVSSTGPGIRFFQLYVT 135 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~-~--s~~~-~-------~~-------~eei~~~~~~~~~~QLy~~ 135 (371)
..|++++=++ . .++.=...++.+.++|+.++ + ++-. . .+ ++.+++..+-|.++.|-+
T Consensus 89 ~~p~ivsi~g-~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~- 163 (296)
T cd04740 89 GTPVIASIAG-S---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP- 163 (296)
T ss_pred CCcEEEEEec-C---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-
Confidence 4576655433 2 23323477888888887655 3 2110 0 11 122333334578888743
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (371)
+.+...++++.++++|++++.+. ++-. +. .-+.+.. .|. + .. ..+ .++.....+.
T Consensus 164 -~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~--~~~-~--~~---------------~~g-g~sg~~~~~~ 218 (296)
T cd04740 164 -NVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETR--KPI-L--GN---------------VTG-GLSGPAIKPI 218 (296)
T ss_pred -CchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccC--cee-e--cC---------------Ccc-eecCcccchH
Confidence 44557788899999999998663 2211 10 0000000 000 0 00 000 0010012234
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
.++.++.+++.+++||+.=+ +.+++++..++++|||.|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 67889999998899988755 578999999999999999884
No 385
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.70 E-value=0.25 Score=47.24 Aligned_cols=90 Identities=24% Similarity=0.335 Sum_probs=55.9
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHH----HHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKA----LALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~ka----l~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+++++||++.=|=.+-.++++. -.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 466788999999997664422111111 233455556667778998886555556666543 348999999999987
Q ss_pred HhhhcCChHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQML 334 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l 334 (371)
+.. .++++.++++.+
T Consensus 108 ~~~---s~~~l~~y~~~i 122 (289)
T PF00701_consen 108 FKP---SQEELIDYFRAI 122 (289)
T ss_dssp SSC---CHHHHHHHHHHH
T ss_pred ccc---hhhHHHHHHHHH
Confidence 642 345555554443
No 386
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.68 E-value=0.32 Score=46.58 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=57.5
Q ss_pred HHHHHHh-CCCEEEEeCCCCcCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHH----HHHHcCCCEEEEchhH
Q 017434 242 ASLAIQY-GAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVF----KALALGASGVFVGRPV 315 (371)
Q Consensus 242 a~~a~~~-Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~----kal~lGAd~V~iGr~~ 315 (371)
++.+.+. |+++|.+.++.|-...-.. -..+.+..+.+.+.+++|||+.=|-.+-.+++ .+..+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4566788 9999999776442211111 12344555666666789999844434444444 3445899999999998
Q ss_pred HHhhhcCChHHHHHHHHHHHH
Q 017434 316 PFSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 316 l~~~~~~G~~gv~~~l~~l~~ 336 (371)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 8752 45666555555544
No 387
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.67 E-value=0.35 Score=46.23 Aligned_cols=92 Identities=22% Similarity=0.325 Sum_probs=57.8
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... -.+.+..+.+.+.+++||++.=|-.+.++.++ +-.+|||+|++..|++
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 355678999999986654422111111 23445566666667899987655555666553 3347999999999998
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.+++..+.+
T Consensus 105 ~~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 105 NKP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 753 34555555555443
No 388
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.64 E-value=0.051 Score=53.59 Aligned_cols=104 Identities=19% Similarity=0.118 Sum_probs=67.0
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
-|.++.|-+..+.+.+.++++.++++|+++|.++=..+.. . ++ .-+. . .+ .....++.
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~----~~~~-~--~~---------~~gg~SG~-- 269 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GL----KGLP-N--AD---------EAGGLSGR-- 269 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-cc----cccc-c--CC---------CCCCcccH--
Confidence 5788888765555568889999999999999886332210 0 00 0000 0 00 00000110
Q ss_pred HhhhhcccCCCHHHHHHHHhhc--CCCEE-EEEccCHHHHHHHHHhCCCEEEEe
Q 017434 206 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~v~~~e~a~~a~~~Gad~I~vs 256 (371)
. .....|+.++.+++.+ ++||+ +.++.+.+++...+.+|||.|.+.
T Consensus 270 ~-----~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 270 P-----LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred H-----HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 0 1123678899999988 78987 456799999999999999999874
No 389
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=94.58 E-value=0.35 Score=46.07 Aligned_cols=92 Identities=22% Similarity=0.354 Sum_probs=56.9
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... ..+.+..+++.+.+++||++.=|-.+..+.++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 456778999999997654422111111 23345556666666889876544445566554 3448999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 642 34555555555444
No 390
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.55 E-value=4.2 Score=39.06 Aligned_cols=189 Identities=17% Similarity=0.101 Sum_probs=102.1
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCCcEEecC-CC-----------CCCHHHHh-------ccCCCceEEEEe-ec
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSS-WA-----------TSSVEEVS-------STGPGIRFFQLY-VT 135 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~-~~-----------~~~~eei~-------~~~~~~~~~QLy-~~ 135 (371)
..+++|-.+ |..-|+.+.++|...+..+ .. ..+++|+. ...+-|..+=+= ++
T Consensus 13 ~~l~~p~~~--------Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~Gy 84 (285)
T TIGR02317 13 DILQIPGAI--------NAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGF 84 (285)
T ss_pred CcEEeCCCC--------CHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCC
Confidence 356677443 4578899999998766432 21 12344432 222234333321 12
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (371)
.+...+.+.+++.+++|+.+|.|. |.- .|++.... .+ ...+ +...
T Consensus 85 G~~~~v~~tv~~~~~aG~agi~IE-Dq~--------------~pK~cgh~---------------~g-~~lv----~~ee 129 (285)
T TIGR02317 85 GEAFNVARTVREMEDAGAAAVHIE-DQV--------------LPKRCGHL---------------PG-KELV----SREE 129 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEe-cCC--------------CccccCCC---------------CC-cccc----CHHH
Confidence 446667778888888998887663 321 12211100 00 0000 0111
Q ss_pred CHHHHHHHHhhc-CCCEEEEEc------cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCC
Q 017434 216 NWKDVKWLQTIT-SLPILVKGV------LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRV 284 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~v------~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 284 (371)
-.+.|+..++.. +.++++=-. ...++ ++...++|||.|.+- ++.+.+.+.++.+.+ ++
T Consensus 130 ~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~---------g~~~~e~i~~~~~~i--~~ 198 (285)
T TIGR02317 130 MVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE---------ALTSLEEFRQFAKAV--KV 198 (285)
T ss_pred HHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC---------CCCCHHHHHHHHHhc--CC
Confidence 123355555543 334444322 12333 466789999999882 244567777888877 46
Q ss_pred cEE---EecCCCCHHHHHHHHHcCCCEEEEchhHHHh
Q 017434 285 PVF---LDGGVRRGTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 285 ~vi---a~GGI~~~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
|++ ..+|-.-.-++.+.-++|.+.|..|..++++
T Consensus 199 Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 199 PLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred CEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 773 3344211124556667899999999877764
No 391
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.51 E-value=0.12 Score=50.59 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=65.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..+.. . ...-|. .. ....+
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~------~~~~~~---~~------------~~~gG--- 256 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P------GLLRSP---LA------------NETGG--- 256 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c------cccccc---cc------------CCCCc---
Confidence 5788888655555577889999999999999875322110 0 000000 00 00000
Q ss_pred HhhhhcccCCCHHHHHHHHhhc--CCCEEE-EEccCHHHHHHHHHhCCCEEEEe
Q 017434 206 YVANQIDRSLNWKDVKWLQTIT--SLPILV-KGVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~v-K~v~~~e~a~~a~~~Gad~I~vs 256 (371)
++........++.++.+++.+ ++||+. .++.+.+|+..++.+|||.|.+.
T Consensus 257 -~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 257 -LSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -cCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 000001123578899999988 689874 45789999999999999999884
No 392
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=94.50 E-value=0.12 Score=52.17 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhh
Q 017434 125 PGIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLA 204 (371)
Q Consensus 125 ~~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (371)
..|.++.|-+ +...+.++++.++++|++++.++ ++-. +...-|+++.-..|. +.+ .... +
T Consensus 168 ~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~------~~~-------~~~~---g 227 (420)
T PRK08318 168 RLPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI------VNG-------KSSH---G 227 (420)
T ss_pred CCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce------ecC-------CCCc---c
Confidence 3688988864 34447788899999999998863 3211 100011110000010 000 0000 0
Q ss_pred hHhhhhcccCCCHHHHHHHHhhc---CCCEE-EEEccCHHHHHHHHHhCCCEEEEeC
Q 017434 205 SYVANQIDRSLNWKDVKWLQTIT---SLPIL-VKGVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 205 ~~~~~~~~~~~~~~~i~~ir~~~---~~pv~-vK~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.++.....++.|+.|.++++.+ ++||+ +.++.+.+|+...+.+|||+|.+..
T Consensus 228 -g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 228 -GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred -cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 0111011234789999999987 78987 4458999999999999999999854
No 393
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.50 E-value=0.5 Score=46.15 Aligned_cols=42 Identities=14% Similarity=0.437 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHH-hCCCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQ-YGAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~-~Gad~I~vs 256 (371)
..|+.++++++.+++||+.=| +.++++++.+++ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 368999999999999988765 579999999987 699999884
No 394
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=94.50 E-value=2.2 Score=41.45 Aligned_cols=239 Identities=17% Similarity=0.203 Sum_probs=122.7
Q ss_pred eeecCccc---CcceeecccccccccCChHhHHHHHHHHHcCCcEE-ecCCCCCCHHHHhccC-----------CCceEE
Q 017434 66 TTVLGFNI---SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-LSSWATSSVEEVSSTG-----------PGIRFF 130 (371)
Q Consensus 66 ~~i~G~~~---~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~-~s~~~~~~~eei~~~~-----------~~~~~~ 130 (371)
.+++|+.+ ..|++||=+|..--..-+--.++..+|+++|+..+ +-+. ...+.+.... .+.-.+
T Consensus 2 ~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGADavKfQt~--~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 2 IKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGADAVKFQTF--YTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred eeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcceeeeecc--cccccccccccCCccccccccccccHH
Confidence 35666554 46999999876432222222478899999998866 3221 1111111110 011123
Q ss_pred EEee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhh
Q 017434 131 QLYV--TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVA 208 (371)
Q Consensus 131 QLy~--~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (371)
|+|- .-+.++..++.+.|++.|.-.+ .+|. ..+..|+-+.++.|. ...
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~----SSPf-d~~svd~l~~~~~~a-yKI------------------------ 129 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFF----SSPF-DLTAVDLLESLNPPA-YKI------------------------ 129 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEE----ecCC-CHHHHHHHHhcCCCe-EEe------------------------
Confidence 3332 2356677888889999885332 2343 344455444444331 000
Q ss_pred hhcccCC-CHHHHHHHHhhcCCCEEEEEc-cCHHHH----HHHHHhCCCEEE-EeCCCCcCCCCccchHHHHHHHHHHhc
Q 017434 209 NQIDRSL-NWKDVKWLQTITSLPILVKGV-LTAEDA----SLAIQYGAAGII-VSNHGARQLDYVPATVMALEEVVQAAK 281 (371)
Q Consensus 209 ~~~~~~~-~~~~i~~ir~~~~~pv~vK~v-~~~e~a----~~a~~~Gad~I~-vs~~gg~~~~~~~~~~~~l~~i~~~~~ 281 (371)
...+. ....|+.+.+. +.|+++-.. .+.++. ..+.+.|...++ ++-...+.-......+..++.+++.+
T Consensus 130 --aS~E~~~~plik~iA~~-~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 130 --ASGEINDLPLIKYIAKK-GKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred --cCccccChHHHHHHHhc-CCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Confidence 01122 23557777664 669988743 445543 455677876443 33222211111112455677777777
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhhcCC--------hHHHHHHHHHHHHHHHHHHHHhCC
Q 017434 282 GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDG--------EAGVRKVLQMLRDEFELTMALSGC 347 (371)
Q Consensus 282 ~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~~~G--------~~gv~~~l~~l~~el~~~m~~~G~ 347 (371)
+++|=.+.-=..-.-.+-|+++||..+ -+.|.......| +++. ..|.+.++..-..+|.
T Consensus 206 -n~~vGlSDHT~g~~a~l~AvALGA~vi--EKHFtldk~~~GpD~~fSldP~ef----k~mv~~ir~~~~alG~ 272 (347)
T COG2089 206 -NAIVGLSDHTLGILAPLAAVALGASVI--EKHFTLDKSREGPDHAFSLDPDEF----KEMVDAIRQVEKALGD 272 (347)
T ss_pred -CCccccccCccchhHHHHHHHhcccce--eeeeeecCCCCCCCcceecCHHHH----HHHHHHHHHHHHHhCC
Confidence 566655542222233445788998754 555544333334 3444 4555555556666664
No 395
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.49 E-value=0.41 Score=46.71 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCceEEEEeecCCh----HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCc
Q 017434 125 PGIRFFQLYVTKHR----NVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDD 200 (371)
Q Consensus 125 ~~~~~~QLy~~~d~----~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (371)
+.|..+.+-.+.+. +...++++.++++|+++|.|+--+... .++. +. .+
T Consensus 123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~--------qg~s-g~----~~-------------- 175 (318)
T TIGR00742 123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL--------SGLS-PK----EN-------------- 175 (318)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh--------cCCC-cc----cc--------------
Confidence 45677776543222 455678888899999998776433210 1111 00 00
Q ss_pred chhhhHhhhhcccCCCHHHHHHHHhhc-CCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 201 SGLASYVANQIDRSLNWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~i~~ir~~~-~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
. .-++..|+.+.++++.+ ++||+.=| +.+.+|+...++ |+|+|.++
T Consensus 176 ----~-----~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 176 ----R-----EIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred ----c-----cCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 0 01235789999999987 79987544 689999998886 99999884
No 396
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.46 E-value=1.3 Score=43.77 Aligned_cols=127 Identities=18% Similarity=0.294 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCCCEEEEEc--cCHHH----HHHHHHhCCCEEEEeCCCCcCCC----CccchHHHHHHHHHHhcCCCcE
Q 017434 217 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLD----YVPATVMALEEVVQAAKGRVPV 286 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v--~~~e~----a~~a~~~Gad~I~vs~~gg~~~~----~~~~~~~~l~~i~~~~~~~i~v 286 (371)
...++++.+ ++.||++|-. .+.++ ++...+.|-+-|.+--.|-+... .-...+.+++.+++.. .+||
T Consensus 198 ~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lPV 274 (352)
T PRK13396 198 FSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLPI 274 (352)
T ss_pred HHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCCE
Confidence 455666654 5899999964 36766 45566778877777655543332 1234677888887765 6899
Q ss_pred EEec----CCCC--HHHHHHHHHcCCCEEEEchhHHHhhh-cCChHHH-HHHHHHHHHHHHHHHHHhC
Q 017434 287 FLDG----GVRR--GTDVFKALALGASGVFVGRPVPFSLA-VDGEAGV-RKVLQMLRDEFELTMALSG 346 (371)
Q Consensus 287 ia~G----GI~~--~~dv~kal~lGAd~V~iGr~~l~~~~-~~G~~gv-~~~l~~l~~el~~~m~~~G 346 (371)
|+|- |.+. ..-...|+++|||+++|=..+--.-+ +.|...+ -+-++.|.++++..-..+|
T Consensus 275 i~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g 342 (352)
T PRK13396 275 MIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVG 342 (352)
T ss_pred EECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 9984 3222 23445677899999999875432111 1232110 0124455555665555555
No 397
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.43 E-value=0.42 Score=45.94 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=58.1
Q ss_pred HHHHHH-hCCCEEEEeCCCCcCCCCcc-chHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhH
Q 017434 242 ASLAIQ-YGAAGIIVSNHGARQLDYVP-ATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPV 315 (371)
Q Consensus 242 a~~a~~-~Gad~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~ 315 (371)
++.+.+ .|+++|.+.++.|-...-.. --...+..+++.+.+++||++.=|-.+-.|+++ +-++|||+|++-.|+
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 356778 99999999776442111111 123445666677777899999666556666654 455899999999999
Q ss_pred HHhhhcCChHHHHHHHHHHH
Q 017434 316 PFSLAVDGEAGVRKVLQMLR 335 (371)
Q Consensus 316 l~~~~~~G~~gv~~~l~~l~ 335 (371)
++.. .++++.++++.+.
T Consensus 110 y~~~---~~~~l~~~f~~va 126 (293)
T PRK04147 110 YYPF---SFEEICDYYREII 126 (293)
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 8653 2455544444443
No 398
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.42 E-value=0.43 Score=46.41 Aligned_cols=42 Identities=21% Similarity=0.608 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHH-HhCCCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAI-QYGAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~-~~Gad~I~vs 256 (371)
..|+.++.+++.+++||+.=| +.+++++..++ +.|+|+|.+.
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 358889999999999988765 68899999998 6899999883
No 399
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=94.31 E-value=0.23 Score=46.98 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=92.1
Q ss_pred cCcccCcceeeccc-------ccccccCChHhHHHHHHHHHc--CCcEEecCCCC----CCHHHHh---ccCCCceEEEE
Q 017434 69 LGFNISMPIMIAPT-------AFQKMAHPEGECATARAASAA--GTIMTLSSWAT----SSVEEVS---STGPGIRFFQL 132 (371)
Q Consensus 69 ~G~~~~~Pi~iAPm-------~~~~~~~~~~e~~~a~aa~~~--G~~~~~s~~~~----~~~eei~---~~~~~~~~~QL 132 (371)
+|.++|-|+.=.|+ ++..-+..+.-+.+.+..++. ++|.++=++.+ ..++... +..+ .-.+ |
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~G-vdGl-i 127 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAG-VDGL-L 127 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcC-CCEE-E
Confidence 58888888877775 122112334456777777755 46777755443 2444421 1121 1111 2
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhc
Q 017434 133 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLG-RREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQI 211 (371)
Q Consensus 133 y~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (371)
-+.-..+.-.++.+.+++.|.+-|.+. .|... +|.+.+...- .++.- + .......|... .
T Consensus 128 vpDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a---~GFiY--~-------vs~~GvTG~~~-----~ 188 (265)
T COG0159 128 VPDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAA---SGFIY--Y-------VSRMGVTGARN-----P 188 (265)
T ss_pred eCCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhC---CCcEE--E-------EecccccCCCc-----c
Confidence 233345556677778888888776653 34432 4444332211 00000 0 00000001000 0
Q ss_pred ccCCCHHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEe
Q 017434 212 DRSLNWKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 212 ~~~~~~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs 256 (371)
......+.++++|+.+++|+.+. |+.++++++.+.+. +|+++|.
T Consensus 189 ~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 189 VSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred cchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 01124567999999999999998 57899999999999 9999995
No 400
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.28 E-value=0.48 Score=45.63 Aligned_cols=154 Identities=25% Similarity=0.230 Sum_probs=86.3
Q ss_pred cCcceeecccccccccCChHhHHHHHHHHHcC-CcEE-e--cC----C-C-C--CC---HHH----HhccCCCceEEEEe
Q 017434 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAG-TIMT-L--SS----W-A-T--SS---VEE----VSSTGPGIRFFQLY 133 (371)
Q Consensus 73 ~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G-~~~~-~--s~----~-~-~--~~---~ee----i~~~~~~~~~~QLy 133 (371)
+..|++++=++ . +++.=...++.++++| ..++ + |. . . . .. +.+ +++...-|.++.+-
T Consensus 90 ~~~p~i~si~g-~---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAG-S---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEecc-C---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 35687665433 2 2433347777888887 6544 3 11 0 0 0 01 122 33333457777764
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhccc
Q 017434 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 213 (371)
Q Consensus 134 ~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (371)
+ +.+...++++.++++|++++.++ ++ ..+.+. +.+... |. + .. .. + .++.....
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~-nt-~~g~~~-~~~~~~--~~-~--~~------------~~---g-g~sg~~~~ 219 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLI-NT-LKGMAI-DIKTRK--PI-L--AN------------VT---G-GLSGPAIK 219 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEE-cc-cccccc-ccccCc--ee-e--cC------------Cc---C-ccCCcCcc
Confidence 3 44566788899999999998763 21 111110 000000 00 0 00 00 0 01100112
Q ss_pred CCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 214 SLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 214 ~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
+..++.++++++.+++||+.=+ +.+++++.+++.+|+|.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 3467889999999999988554 679999999999999999884
No 401
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=94.25 E-value=0.47 Score=45.48 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=57.1
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccc-hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHH----HHHcCCCEEEEchhHH
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPA-TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFK----ALALGASGVFVGRPVP 316 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~i~via~GGI~~~~dv~k----al~lGAd~V~iGr~~l 316 (371)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.=|-.+-.+.++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 456778999999986554321111111 23445566666767899876444444555553 3347999999999987
Q ss_pred HhhhcCChHHHHHHHHHHHH
Q 017434 317 FSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 317 ~~~~~~G~~gv~~~l~~l~~ 336 (371)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 643 45666555555544
No 402
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.23 E-value=2.4 Score=41.37 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=59.5
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCC-CC--c-cchHHHHHHHHHHhcCCCcEEEecCCCC--------------
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQL-DY--V-PATVMALEEVVQAAKGRVPVFLDGGVRR-------------- 294 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~-~~--~-~~~~~~l~~i~~~~~~~i~via~GGI~~-------------- 294 (371)
.+|++|+... +.|+|.+-++. ||-+.. ++ . .-.++.|.+|.+.++ ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 4688887765 57999999874 554421 11 1 126778999998873 589998886532
Q ss_pred --------HHHHHHHHHcCCCEEEEchhHHHh
Q 017434 295 --------GTDVFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 295 --------~~dv~kal~lGAd~V~iGr~~l~~ 318 (371)
-+|+.|++.+|..-|-+++-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 389999999999999999976543
No 403
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.22 E-value=0.49 Score=46.26 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=50.4
Q ss_pred HHHHHHHHhCC--CEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 240 EDASLAIQYGA--AGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 240 e~a~~a~~~Ga--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
+.+..++++|+ |.|.+...-| ......+.++++++..+ ++|||+ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~p-~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHLP-ETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhCC-CCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788899965 9999964212 22445667888888763 466555 66889999999999999999877
No 404
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.20 E-value=1.7 Score=41.22 Aligned_cols=140 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred eecccccccccCChHhHHHHHHHHHcCCcEEecCCC------------CCCHHH-------HhccCCCc-eEEEE----e
Q 017434 78 MIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWA------------TSSVEE-------VSSTGPGI-RFFQL----Y 133 (371)
Q Consensus 78 ~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~------------~~~~ee-------i~~~~~~~-~~~QL----y 133 (371)
++.|.++ |...|+.+.++|+..+++.-+ ..+++| |++..+.+ ...=+ |
T Consensus 17 i~~~tay--------D~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y 88 (264)
T PRK00311 17 IVMLTAY--------DYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSY 88 (264)
T ss_pred EEEEeCC--------CHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCc
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhccc
Q 017434 134 VTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDR 213 (371)
Q Consensus 134 ~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (371)
.....+......+..+++|+.++-+ -+.
T Consensus 89 ~~~~~~av~~a~r~~~~aGa~aVki----------------------------------------------------Edg 116 (264)
T PRK00311 89 QASPEQALRNAGRLMKEAGAHAVKL----------------------------------------------------EGG 116 (264)
T ss_pred cCCHHHHHHHHHHHHHHhCCeEEEE----------------------------------------------------cCc
Q ss_pred CCCHHHHHHHHhhcCCCEE---------------EEEc--------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchH
Q 017434 214 SLNWKDVKWLQTITSLPIL---------------VKGV--------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATV 270 (371)
Q Consensus 214 ~~~~~~i~~ir~~~~~pv~---------------vK~v--------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~ 270 (371)
....+.|+.+++. ++||+ .|.. ...++++.+.++|||.|.+ -+++.
T Consensus 117 ~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~l---------E~v~~- 185 (264)
T PRK00311 117 EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVL---------ECVPA- 185 (264)
T ss_pred HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEE---------cCCCH-
Q ss_pred HHHHHHHHHhcCCCcEEEec
Q 017434 271 MALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 271 ~~l~~i~~~~~~~i~via~G 290 (371)
+...++.+.+ ++|+|.-|
T Consensus 186 ~~~~~i~~~l--~iP~igiG 203 (264)
T PRK00311 186 ELAKEITEAL--SIPTIGIG 203 (264)
T ss_pred HHHHHHHHhC--CCCEEEec
No 405
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.17 E-value=0.026 Score=50.11 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=81.7
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhH
Q 017434 127 IRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASY 206 (371)
Q Consensus 127 ~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (371)
...|=|+ .|-..+.+++++++++|-. ++|++|.- .|++ . ...+-+|
T Consensus 21 ~~vfLl~--g~I~~l~~~v~~~~~~gK~-vfVHiDli----------~Gl~------~---------------D~~~i~~ 66 (175)
T PF04309_consen 21 EVVFLLT--GDIGNLKDIVKRLKAAGKK-VFVHIDLI----------EGLS------R---------------DEAGIEY 66 (175)
T ss_dssp SEEEE-S--EECCCHHHHHHHHHHTT-E-EEEECCGE----------ETB-------S---------------SHHHHHH
T ss_pred CEEEEEc--CcHHHHHHHHHHHHHcCCE-EEEEehhc----------CCCC------C---------------CHHHHHH
Confidence 4455454 4677788999999999855 56788842 1221 0 0011223
Q ss_pred hhhhcccC----CCHHHHHHHHhhcCCCEEEEEc----cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHH
Q 017434 207 VANQIDRS----LNWKDVKWLQTITSLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV 277 (371)
Q Consensus 207 ~~~~~~~~----~~~~~i~~ir~~~~~pv~vK~v----~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~ 277 (371)
+.....++ -....++..++. ++.-+-+.- .+.+. .+.+.+..+|+|-+= ++- ....+.+++
T Consensus 67 L~~~~~~dGIISTk~~~i~~Ak~~-gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-------Pg~--~p~vi~~i~ 136 (175)
T PF04309_consen 67 LKEYGKPDGIISTKSNLIKRAKKL-GLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-------PGV--MPKVIKKIR 136 (175)
T ss_dssp HHHTT--SEEEESSHHHHHHHHHT-T-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-------SCC--HHHHHCCCC
T ss_pred HHHcCCCcEEEeCCHHHHHHHHHc-CCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-------hHH--HHHHHHHHH
Confidence 32222121 123556666654 665555542 22333 455668899999882 221 113344444
Q ss_pred HHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 278 QAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 278 ~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
+.+ ++|||+.|=|++.+|+.++|..||++|....+-+|
T Consensus 137 ~~~--~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 137 EET--NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCC--SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred Hhc--CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 433 68999999999999999999999999999888776
No 406
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.12 E-value=0.59 Score=42.80 Aligned_cols=42 Identities=21% Similarity=0.619 Sum_probs=36.0
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHh-CCCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQY-GAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~-Gad~I~vs 256 (371)
..|+.++.+++.+++||+.=+ +.+++++..+++. |+|+|.+.
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 368889999999999998865 5789999999998 89999884
No 407
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.93 E-value=0.69 Score=40.84 Aligned_cols=81 Identities=23% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcC-CCcEEEecCCCC--------HHHHHHHHHcCCCEEEEc
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKG-RVPVFLDGGVRR--------GTDVFKALALGASGVFVG 312 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~i~via~GGI~~--------~~dv~kal~lGAd~V~iG 312 (371)
++.+.+.|+++|.+.+ ..+..+++..++ ++||++.=|-.+ -+.+.++..+|||++++.
T Consensus 19 ~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 19 CDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 5677889999998842 556667677666 789776433332 355667777999999999
Q ss_pred hhHHHhhhcCChHHHHHHHHHHHH
Q 017434 313 RPVPFSLAVDGEAGVRKVLQMLRD 336 (371)
Q Consensus 313 r~~l~~~~~~G~~gv~~~l~~l~~ 336 (371)
-|+.+.... .++++.+.+..+.+
T Consensus 86 ~~~~~~~~~-~~~~~~~~~~~i~~ 108 (201)
T cd00945 86 INIGSLKEG-DWEEVLEEIAAVVE 108 (201)
T ss_pred ccHHHHhCC-CHHHHHHHHHHHHH
Confidence 887654310 13444444444443
No 408
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.87 E-value=6.2 Score=37.63 Aligned_cols=183 Identities=16% Similarity=0.096 Sum_probs=104.4
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHh-------ccC-C-CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVS-------STG-P-GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~-~-~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+..++ ++ +.+.+.+|-. +.. + .+.++++-. .+.+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHH
Confidence 35567776434434444445777777778876443 22 2334555422 222 2 456666543 45667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.|++.|++++.+.. |.+ + + ...+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~p--P~y----------~--~-------------------------------~~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVVT--PYY----------N--K-------------------------------PTQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEcC--CcC----------C--C-------------------------------CCHHHHHHHH
Confidence 77899999999999998742 221 0 0 0001123456
Q ss_pred HHHHhhcCCCEEEEEc-------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 221 KWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v-------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
+.+.+.+++||++=.. .+++..+++.+.. ..+-+= +.. ..+..+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~-~v~giK-------~s~-~d~~~~~~l~~~~~~~~~v~~--G-- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEP-NIVAIK-------EAT-GNLERISEIKAIAPDDFVVLS--G-- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCC-CEEEEE-------eCC-CCHHHHHHHHHhcCCCeEEEE--C--
Confidence 6677777899987653 4667777777643 222221 111 123445556555543455444 2
Q ss_pred CHHHHHHHHHcCCCEEEEchhHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l 316 (371)
...-++..+.+|+++.+.|...+
T Consensus 184 ~d~~~~~~~~~G~~G~i~~~~~~ 206 (285)
T TIGR00674 184 DDALTLPMMALGGKGVISVTANV 206 (285)
T ss_pred chHHHHHHHHcCCCEEEehHHHh
Confidence 12456788899999999887654
No 409
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.41 Score=46.42 Aligned_cols=174 Identities=24% Similarity=0.259 Sum_probs=96.4
Q ss_pred hHhHHHHHHHHHcC-CcEEe---cCCCCCC----------HHH----HhccCCCceEEEEeecCChHHHHHHHHHHHHcC
Q 017434 91 EGECATARAASAAG-TIMTL---SSWATSS----------VEE----VSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAG 152 (371)
Q Consensus 91 ~~e~~~a~aa~~~G-~~~~~---s~~~~~~----------~ee----i~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG 152 (371)
+.-...++...+++ ..++. |+-.... +++ +++...-|.++.|-+ +.+.+.++++.++++|
T Consensus 109 ~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g 186 (310)
T COG0167 109 EAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcC
Confidence 33457777788877 44442 3221111 122 223334688888865 7888899999999999
Q ss_pred CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcC--CC
Q 017434 153 FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITS--LP 230 (371)
Q Consensus 153 ~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~--~p 230 (371)
.++++++ ++-..+.+ -|+... -| ..++ +..+- .+..+ .+...+.|+++++.++ +|
T Consensus 187 ~Dgl~~~-NT~~~~~~-id~~~~--~~---~~~~----------~~GGL-SG~~i-----kp~al~~v~~l~~~~~~~ip 243 (310)
T COG0167 187 ADGLIAI-NTTKSGMK-IDLETK--KP---VLAN----------ETGGL-SGPPL-----KPIALRVVAELYKRLGGDIP 243 (310)
T ss_pred CcEEEEE-eecccccc-cccccc--cc---ccCc----------CCCCc-Ccccc-----hHHHHHHHHHHHHhcCCCCc
Confidence 9999875 43221110 011000 00 0000 00000 00011 1235678899988876 89
Q ss_pred EE-EEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHH-HHHHHHHHhcCCCcEEEecCCCCHHHHH
Q 017434 231 IL-VKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVM-ALEEVVQAAKGRVPVFLDGGVRRGTDVF 299 (371)
Q Consensus 231 v~-vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~i~via~GGI~~~~dv~ 299 (371)
|+ +.|+.+.+||..-+.+||+.+.|... -.+.||.-.. ....+.+.+. .-|+.+-+|+.
T Consensus 244 IIGvGGI~s~~DA~E~i~aGA~~vQv~Ta---l~~~Gp~i~~~I~~~l~~~l~-------~~g~~si~d~i 304 (310)
T COG0167 244 IIGVGGIETGEDALEFILAGASAVQVGTA---LIYKGPGIVKEIIKGLARWLE-------EKGFESIQDII 304 (310)
T ss_pred EEEecCcCcHHHHHHHHHcCCchheeeee---eeeeCchHHHHHHHHHHHHHH-------HcCCCCHHHHh
Confidence 76 34578999999999999999998542 1233444332 2333333332 23677766665
No 410
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.77 E-value=6.8 Score=37.76 Aligned_cols=180 Identities=15% Similarity=0.060 Sum_probs=96.9
Q ss_pred hHHHHHHHHHcCCcEE-ecCC--C--C--------CCHHHHh-------ccCCCceEEEEe-ecCChHHHHHHHHHHHHc
Q 017434 93 ECATARAASAAGTIMT-LSSW--A--T--------SSVEEVS-------STGPGIRFFQLY-VTKHRNVDAQLVKRAERA 151 (371)
Q Consensus 93 e~~~a~aa~~~G~~~~-~s~~--~--~--------~~~eei~-------~~~~~~~~~QLy-~~~d~~~~~~~~~~a~~a 151 (371)
|..-|+.+.+.|...+ +|+. + + .+++|+. ...+-|...=+= ++.+...+.+.+++.+++
T Consensus 26 Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 26 NAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 4578899999998766 3332 1 1 2333332 222234333221 124777778889999999
Q ss_pred CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhc-CCC
Q 017434 152 GFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTIT-SLP 230 (371)
Q Consensus 152 G~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~-~~p 230 (371)
|+.++.|. |.. .|++.... . + ...+ +...-.+.|+..++.- +.+
T Consensus 106 Gaagi~IE-Dq~--------------~pK~cg~~--~-----------~---~~lv----~~ee~~~kI~Aa~~a~~~~d 150 (292)
T PRK11320 106 GAAAVHIE-DQV--------------GAKRCGHR--P-----------N---KEIV----SQEEMVDRIKAAVDARTDPD 150 (292)
T ss_pred CCeEEEEe-cCC--------------CccccCCC--C-----------C---Cccc----CHHHHHHHHHHHHHhccCCC
Confidence 99887663 321 12211100 0 0 0000 0111123344444433 344
Q ss_pred EEEEEc------cCHHH----HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEE---EecCCCCHHH
Q 017434 231 ILVKGV------LTAED----ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVF---LDGGVRRGTD 297 (371)
Q Consensus 231 v~vK~v------~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~vi---a~GGI~~~~d 297 (371)
+++=-. ...++ ++...++|||.|.+. ++.+.+.+.++.+.+ ++|++ ..+|-.-.-+
T Consensus 151 ~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~---------~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s 219 (292)
T PRK11320 151 FVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE---------AMTELEMYRRFADAV--KVPILANITEFGATPLFT 219 (292)
T ss_pred eEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec---------CCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCC
Confidence 444322 12333 566789999999983 244677788888777 56773 3344221123
Q ss_pred HHHHHHcCCCEEEEchhHHHh
Q 017434 298 VFKALALGASGVFVGRPVPFS 318 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~~l~~ 318 (371)
+.+.-++|.+.|..|...+++
T Consensus 220 ~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 220 TEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCcEEEEChHHHHH
Confidence 445556899999999877654
No 411
>PLN02411 12-oxophytodienoate reductase
Probab=93.70 E-value=3.3 Score=41.56 Aligned_cols=228 Identities=17% Similarity=0.123 Sum_probs=106.6
Q ss_pred cceeecCcccCcceeeccccccccc--CC-hHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHH
Q 017434 64 MTTTVLGFNISMPIMIAPTAFQKMA--HP-EGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNV 140 (371)
Q Consensus 64 ~s~~i~G~~~~~Pi~iAPm~~~~~~--~~-~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~ 140 (371)
...+|.+.++++-|++|||....-. .| +-.+..-+.-++-| .+++++....+.+ .... +....+|.....+.
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~--g~~~--~~~~gi~~d~~i~~ 88 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPT--APGF--PHVPGIYSDEQVEA 88 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcc--cCcC--CCCCccCCHHHHHH
Confidence 4577889999999999999643210 11 11233333333335 6666654322211 0111 11112333223346
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
++++++.+++.|++++ +-+..+ |............++ +..... .... ........+ ..........++.++|
T Consensus 89 ~~~l~~avH~~G~~i~-~QL~H~--Gr~~~~~~~~~~~~~-~~~s~~-~~~~-~~~~~~~~~--~~~~~~~pr~mt~~eI 160 (391)
T PLN02411 89 WKKVVDAVHAKGSIIF-CQLWHV--GRASHQVYQPGGAAP-ISSTNK-PISE-RWRILMPDG--SYGKYPKPRALETSEI 160 (391)
T ss_pred HHHHHHHHHhcCCEEE-EeccCC--CCCCccccccCCCCc-cCCccc-cccC-CcccccCCc--cccCCCCCccCCHHHH
Confidence 6788888889998864 344322 221100000000000 000000 0000 000000000 0000001134677788
Q ss_pred HHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc---C----------CCCccc-------hHHHHHHHHHHh
Q 017434 221 KWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR---Q----------LDYVPA-------TVMALEEVVQAA 280 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~ 280 (371)
+++.+.+ .+-|++|.++|.|+|.++..-|+ | ..+|.+ .++.+..|++++
T Consensus 161 ~~ii~~f-----------~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~v 229 (391)
T PLN02411 161 PEVVEHY-----------RQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAI 229 (391)
T ss_pred HHHHHHH-----------HHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHc
Confidence 8887753 46789999999999999643232 1 112222 446677777776
Q ss_pred cCC-CcEEEec-----------CCCCHHHHHHHHHc-------CCCEEEEchhH
Q 017434 281 KGR-VPVFLDG-----------GVRRGTDVFKALAL-------GASGVFVGRPV 315 (371)
Q Consensus 281 ~~~-i~via~G-----------GI~~~~dv~kal~l-------GAd~V~iGr~~ 315 (371)
+.+ +-|=.++ ++..+..+.+.|+. |.|.+-+....
T Consensus 230 g~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~ 283 (391)
T PLN02411 230 GADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPR 283 (391)
T ss_pred CCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCc
Confidence 533 2222221 12234456666662 58888877643
No 412
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.69 E-value=0.97 Score=43.84 Aligned_cols=42 Identities=17% Similarity=0.303 Sum_probs=36.7
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
+|..++++++.+++||+.-| +.+.+++..++..|+|+|.+.+
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 57888999998899998886 6789999999999999999864
No 413
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=93.69 E-value=6.8 Score=37.50 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=106.0
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+...+.|+..++ + ++...+.||-. +..+ -|.+.++- . +.+.
T Consensus 5 ~~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~ 82 (289)
T cd00951 5 LSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTAT 82 (289)
T ss_pred EEEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHH
Confidence 35567777544444555556788888888976543 2 23445666532 2222 46677774 3 6777
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..+++++++++|++++.+. .|.+. + . +..-..+..
T Consensus 83 ~i~~a~~a~~~Gad~v~~~--pP~y~------------~--~-----------------------------~~~~i~~~f 117 (289)
T cd00951 83 AIAYAQAAEKAGADGILLL--PPYLT------------E--A-----------------------------PQEGLYAHV 117 (289)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC------------C--C-----------------------------CHHHHHHHH
Confidence 7889999999999999873 22210 0 0 001123446
Q ss_pred HHHHhhcCCCEEEEEc----cCHHHHHHHHH-h-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 221 KWLQTITSLPILVKGV----LTAEDASLAIQ-Y-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v----~~~e~a~~a~~-~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.+.+.+++|+++=.. .+++...++.+ . .+-+|+-+. ..+..+.++.+..+++..|+ .|-.+
T Consensus 118 ~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds~----------~d~~~~~~~~~~~~~~~~v~--~G~~~ 185 (289)
T cd00951 118 EAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDGV----------GDIELMRRIVAKLGDRLLYL--GGLPT 185 (289)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE--eCCCc
Confidence 6677777899887643 46777777765 3 233333221 13444555555544344333 33332
Q ss_pred HHH-HHHHHHcCCCEEEEchhHH
Q 017434 295 GTD-VFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 ~~d-v~kal~lGAd~V~iGr~~l 316 (371)
.++ +..++.+||++++-|.+-+
T Consensus 186 ~d~~~~~~l~~Ga~G~is~~~n~ 208 (289)
T cd00951 186 AEVFALAYLAMGVPTYSSAVFNF 208 (289)
T ss_pred chHhHHHHHHCCCCEEEechhhh
Confidence 233 6788899999998886543
No 414
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=93.65 E-value=6.1 Score=36.86 Aligned_cols=99 Identities=20% Similarity=0.154 Sum_probs=70.8
Q ss_pred HHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---cCC-CcEEEecCCCCH
Q 017434 220 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAA---KGR-VPVFLDGGVRRG 295 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~-i~via~GGI~~~ 295 (371)
++.+.+. ++++-+=.+.+.+.|..+.++|+++|..+ -||-.|++......+.+++..+ ... ..+++ -+++.+
T Consensus 108 i~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSpF--vgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~v-as~~~~ 183 (239)
T COG0176 108 IKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISPF--VGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLV-ASARFP 183 (239)
T ss_pred HHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEee--cchHHhhccCchHHHHHHHHHHHHhccccceEEE-ecCccH
Confidence 4444443 67877778899999999999999988763 3554566555444555555443 222 34555 459999
Q ss_pred HHHHHHHHcCCCEEEEchhHHHhhhcC
Q 017434 296 TDVFKALALGASGVFVGRPVPFSLAVD 322 (371)
Q Consensus 296 ~dv~kal~lGAd~V~iGr~~l~~~~~~ 322 (371)
.++..+..+|||.+-+.-.++..+..+
T Consensus 184 ~~~~~~~l~G~d~~Tip~~~l~~l~~~ 210 (239)
T COG0176 184 NHVYIAALAGADVLTIPPDLLKQLLKH 210 (239)
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHhc
Confidence 999999999999999998888776554
No 415
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.63 E-value=7.2 Score=37.61 Aligned_cols=183 Identities=16% Similarity=0.078 Sum_probs=106.1
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--S---SWATSSVEEVS-------STGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++.+.+.||-. +... -|.+..+- . +.+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 56777887544444555556788888888876543 2 23445665432 2222 45677773 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++++.++++|++++.+. .|.+. .| ...-..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y~-----------~~--------------------------------~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYLT-----------EA--------------------------------PQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC-----------CC--------------------------------CHHHHHHHH
Confidence 8889999999999999873 22210 00 000123446
Q ss_pred HHHHhhcCCCEEEEEc----cCHHHHHHHH-Hh-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 221 KWLQTITSLPILVKGV----LTAEDASLAI-QY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v----~~~e~a~~a~-~~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.+.+.+++||++=.. .+++...++. +. .+-+|+-+. .++..+.++.+..+++..|+. |..+
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl~--G~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYLG--GLPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEe--CCCc
Confidence 6677777899887542 4677777776 43 233444321 134455555555544454442 3221
Q ss_pred -HHHHHHHHHcCCCEEEEchhHH
Q 017434 295 -GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 295 -~~dv~kal~lGAd~V~iGr~~l 316 (371)
-..+..++.+||++...|.+-+
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~ 215 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNF 215 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhh
Confidence 2234566789999988777543
No 416
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.57 E-value=0.24 Score=45.73 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 248 YGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 248 ~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.|...+.+--.||. +.|...+.++.+.+ ..++|.-||||+++.+.+...+|||.+..|..+.
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 35555555333332 33445555554443 4599999999999999999889999999999664
No 417
>PLN02979 glycolate oxidase
Probab=93.46 E-value=0.72 Score=45.69 Aligned_cols=42 Identities=24% Similarity=0.451 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 269 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 269 ~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+|+.|..+++.- ++|||+ .||.+.+|+.++..+|+|+|.++.
T Consensus 211 tW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 211 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 577788887765 789888 557899999999999999999875
No 418
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.42 E-value=0.4 Score=46.17 Aligned_cols=83 Identities=23% Similarity=0.349 Sum_probs=59.2
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc-----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----QLDYVPATV----MALEEVVQAAKGRVPVFLDG--GVRRGT 296 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~i~via~G--GI~~~~ 296 (371)
+.|+++-++.+.-.|+.+.++|.++|.+|+++-. .-|.+.-++ +.+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688888888899999999999999999875311 123333333 3345555555 79999987 677888
Q ss_pred HH----HHHHHcCCCEEEEc
Q 017434 297 DV----FKALALGASGVFVG 312 (371)
Q Consensus 297 dv----~kal~lGAd~V~iG 312 (371)
++ .++..+||.++.|-
T Consensus 94 ~v~r~V~~~~~aGaagi~IE 113 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIE 113 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 86 34555899999883
No 419
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.39 E-value=0.86 Score=42.39 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=32.8
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
..|+.|++++ .++||+.=+ +.+.++++.+++.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3577788886 678987644 689999999999999999985
No 420
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.35 E-value=0.41 Score=45.96 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=59.5
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATV----MALEEVVQAAKGRVPVFLDG--GVRRGTD 297 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~i~via~G--GI~~~~d 297 (371)
+-|+++-++.+.-.|+.+.++|.++|.+|+++-. .-|.+.-++ +.+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 4688888888899999999999999999875321 123232222 3445555555 79999986 7777777
Q ss_pred H----HHHHHcCCCEEEEch
Q 017434 298 V----FKALALGASGVFVGR 313 (371)
Q Consensus 298 v----~kal~lGAd~V~iGr 313 (371)
+ .++..+|+.++.|--
T Consensus 90 v~~tv~~~~~aG~agi~IED 109 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIED 109 (285)
T ss_pred HHHHHHHHHHcCCeEEEEec
Confidence 5 355558999998843
No 421
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.29 E-value=0.95 Score=43.65 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=59.7
Q ss_pred HHHHhhcCCCEEEEEcc--CHH----HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 221 KWLQTITSLPILVKGVL--TAE----DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v~--~~e----~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
+.+++..+.|+++.... +++ .++.+.+.|+++|.++-... + .+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~-~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-V-LGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-C-CCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444445688877642 333 35667788999999853210 0 01113467888888876 5898885 5889
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 017434 295 GTDVFKALALGASGVFVG 312 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iG 312 (371)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
No 422
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.22 E-value=0.78 Score=42.96 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCCEEEEEcc---CH----HHHHHHHHhCCCEEEEeCC-----CCcC-CCCccch---HHHHHHHHHHhc
Q 017434 218 KDVKWLQTITSLPILVKGVL---TA----EDASLAIQYGAAGIIVSNH-----GARQ-LDYVPAT---VMALEEVVQAAK 281 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~---~~----e~a~~a~~~Gad~I~vs~~-----gg~~-~~~~~~~---~~~l~~i~~~~~ 281 (371)
+.++.|...+.+|+++=+-. +. +.++++.++|+++|.+-.. .|.. ...-.+. .+.+..++++..
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~ 138 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD 138 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh
Confidence 44677777778998876532 33 3367788999999999321 1110 0011122 233444455544
Q ss_pred C--CCcEEEe-----cCCCCHHHHH----HHHHcCCCEEEEchhH
Q 017434 282 G--RVPVFLD-----GGVRRGTDVF----KALALGASGVFVGRPV 315 (371)
Q Consensus 282 ~--~i~via~-----GGI~~~~dv~----kal~lGAd~V~iGr~~ 315 (371)
+ +++|++= .|-..-++++ .+.++|||+|++-.+.
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4 6777776 2112233433 3444899999987653
No 423
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=93.21 E-value=0.44 Score=45.11 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCEEEE-EccCHHHHHHHHHhCCCEEEEeC
Q 017434 217 WKDVKWLQTITSLPILVK-GVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK-~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+.++.+|+.+++|+.+. |+.++++++.+. .|+|+++|..
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 467999999999999998 578999999988 9999999953
No 424
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.20 E-value=2.1 Score=38.52 Aligned_cols=89 Identities=21% Similarity=0.129 Sum_probs=55.2
Q ss_pred CHHHHHHHHhhc-CCCEEEEE-ccCHH--HHHHHHHhCCCEEEEeCCCCcCCCCccchH-HHHHHHHHHhcCCCcEEEe-
Q 017434 216 NWKDVKWLQTIT-SLPILVKG-VLTAE--DASLAIQYGAAGIIVSNHGARQLDYVPATV-MALEEVVQAAKGRVPVFLD- 289 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~-v~~~e--~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i~via~- 289 (371)
..+.++.+|+.. +.++.+-. +.++. +++.+.++|+|.|.++... .+..+ +.+..+++ . .++++..
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA------DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 356788888874 33444322 23544 6899999999999985321 11122 33333333 2 5777765
Q ss_pred cCCCCH-HHHHHHHHcCCCEEEEch
Q 017434 290 GGVRRG-TDVFKALALGASGVFVGR 313 (371)
Q Consensus 290 GGI~~~-~dv~kal~lGAd~V~iGr 313 (371)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 355544 777888889999998853
No 425
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.20 E-value=8 Score=36.85 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=104.3
Q ss_pred ceeecccccccccCChHhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017434 76 PIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVS-------STGP--GIRFFQLYVTKHRNVD 141 (371)
Q Consensus 76 Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~~~ 141 (371)
|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.+|-. +..+ .+.++++- ..+.+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 5556676443333444445777778888986543 22 2234554422 2222 46777764 3577788
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHHH
Q 017434 142 AQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDVK 221 (371)
Q Consensus 142 ~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (371)
.++++.++++|++++.+.. |... + .+ ..-..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~~--P~~~------------~--~s-----------------------------~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIP--PYYF------------K--PS-----------------------------QEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEE--STSS------------S--CC-----------------------------HHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEec--cccc------------c--ch-----------------------------hhHHHHHHH
Confidence 8999999999999998753 3210 0 00 000234567
Q ss_pred HHHhhcCCCEEEEEc-------cCHHHHHHHHHhC-CCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 222 WLQTITSLPILVKGV-------LTAEDASLAIQYG-AAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 222 ~ir~~~~~pv~vK~v-------~~~e~a~~a~~~G-ad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
.+.+.+++|+++=.. .+++...++.+.. +-+|+.+. .++..+.++.....+++.|+ .|
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---
Confidence 777788999998764 3566667766632 22333221 12344555555555555544 34
Q ss_pred CHHHHHHHHHcCCCEEEEchhHHH
Q 017434 294 RGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
....+..++.+|+++++.|.+.++
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~~ 210 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANVF 210 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGTH
T ss_pred ccccccccccccCCEEEEcccccC
Confidence 455688999999999999986543
No 426
>PTZ00411 transaldolase-like protein; Provisional
Probab=93.12 E-value=1.1 Score=43.83 Aligned_cols=101 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred CHHHHHHHHhhc--CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCC-------------CccchHHHHHHHHHHh
Q 017434 216 NWKDVKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 280 (371)
Q Consensus 216 ~~~~i~~ir~~~--~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 280 (371)
+|+=++.++... ++++-+=.+.+...|..|.++|++.|...- ||-.| .+.+.+..+.++...+
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPfV--GRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPFV--GRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEeec--chHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 565555444332 788888888999999999999999988642 22111 1334556666666554
Q ss_pred c--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 281 K--GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 281 ~--~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
. +--..|....+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 224 k~~g~~T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 224 KKHGYKTIVMGASFRNTGEILE--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred HHcCCCeEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence 2 2234566677999999998 389999999887776554
No 427
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.06 E-value=9 Score=37.00 Aligned_cols=183 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred cceeecccccccccCChHhHHHHHHHHHcCCcEEe--cC---CCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASAAGTIMTL--SS---WATSSVEEVSS-------TGP--GIRFFQLYVTKHRNV 140 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~--s~---~~~~~~eei~~-------~~~--~~~~~QLy~~~d~~~ 140 (371)
.|.++.|+.-.+-.+.++-..+.+-..+.|+..++ +| +.+.+.+|-.+ ... -|...+.-. .+.+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHH
Confidence 57777887643435555556778888888976444 22 34456665322 222 356666654 45666
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHHH
Q 017434 141 DAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKDV 220 (371)
Q Consensus 141 ~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 220 (371)
..++.+.|++.|++++.+. +|.+ ... ...-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-----------------~k~--------------------------~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-----------------NKP--------------------------SQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-----------------cCC--------------------------ChHHHHHHH
Confidence 7789999999999999863 2322 000 011134567
Q ss_pred HHHHhhcCCCEEEEEc-------cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 221 KWLQTITSLPILVKGV-------LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 221 ~~ir~~~~~pv~vK~v-------~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
+++.+.+++|+++=.+ .++|...++.+. -..+-+=.. ..++..+.++....+.+-=++.+|+
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~-~nivgiKd~--------~gd~~~~~~~~~~~~~~~f~v~~G~-- 191 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEH-PNIVGVKDS--------SGDLDRLEEIIAALGDRDFIVLSGD-- 191 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcC-CCEEEEEeC--------CcCHHHHHHHHHhcCccCeeEEeCc--
Confidence 8888888999998875 467888887772 222222111 1245666666665532111344442
Q ss_pred CHHHHHHHHHcCCCEEEEchhH
Q 017434 294 RGTDVFKALALGASGVFVGRPV 315 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr~~ 315 (371)
-+.++..+.+|++++..+..-
T Consensus 192 -d~~~~~~~~~G~~G~is~~~N 212 (299)
T COG0329 192 -DELALPALLLGADGVISVTAN 212 (299)
T ss_pred -hHHHHHHHhCCCCeEEecccc
Confidence 466778888999999988843
No 428
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=93.05 E-value=1.5 Score=43.15 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=96.3
Q ss_pred hhhhhcCCccchhhHHHhHhccccceeeccccCCCCCCccceeecCcccCcceeecccccccccC--ChHhHHHHHHHHH
Q 017434 25 VYDYYASGAEDQWTLQENRNAFSRILFRPRILRDVSKIDMTTTVLGFNISMPIMIAPTAFQKMAH--PEGECATARAASA 102 (371)
Q Consensus 25 ~~~y~~~g~~~~~t~~~n~~~~~~~~l~pr~l~~~~~~d~s~~i~G~~~~~Pi~iAPm~~~~~~~--~~~e~~~a~aa~~ 102 (371)
....+.++......++.+...+....-.|... +.|+... .|++...+.+ ..-+..+--.+..
T Consensus 39 glG~ia~~~~~~e~l~~~i~~~~~~~~~p~~~----------~~f~~~~------~~v~~~~l~~~~~~~~~~~~~ii~~ 102 (336)
T COG2070 39 GLGIIASGGLPAEQLRAEIRKIRALTDKPFVA----------NNFGSAP------APVNVNILVARRNAAEAGVDAIIEG 102 (336)
T ss_pred CccccccccCCHHHHHHHHHHHHHhcCCcchh----------ccccccc------ccchhheecccccchHHhhhhHHhc
Confidence 34455666666566677776666666655432 1122110 2222222222 2223455556666
Q ss_pred cCCcEEecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc
Q 017434 103 AGTIMTLSSWATSSVEEVSSTGP-GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPH 181 (371)
Q Consensus 103 ~G~~~~~s~~~~~~~eei~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~ 181 (371)
+|++.+.+++...+-+.+..... +...+.... +.+..++++++|.++++.- .+..|
T Consensus 103 ~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~~--g~eAG--------------- 159 (336)
T COG2070 103 AGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIAQ--GAEAG--------------- 159 (336)
T ss_pred CCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEec--CCcCC---------------
Confidence 79999988776434343332211 223333322 2456678888999988751 11110
Q ss_pred cccccccccccCCCCCCCcchhhhHhhhhcccCC-CHHHHHHHHhhcC-CCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 182 LTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL-NWKDVKWLQTITS-LPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~ir~~~~-~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+... .+..+ +...+.++++.++ +||+.-| +.+.+.+..++.+||++|.+.+
T Consensus 160 -----------------------GH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT 214 (336)
T COG2070 160 -----------------------GHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGADGVQMGT 214 (336)
T ss_pred -----------------------CcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccHHHHhhh
Confidence 00000 01122 3466889999998 8999886 6789999999999999999854
No 429
>TIGR03586 PseI pseudaminic acid synthase.
Probab=93.02 E-value=2.5 Score=41.36 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=86.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccC
Q 017434 135 TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRS 214 (371)
Q Consensus 135 ~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (371)
++|.+...++++.|.++|++++=.-.- ..+.+-... .++.....+ ..+. +...-+.+. ...
T Consensus 13 ~G~~~~A~~lI~~A~~aGAdavKFQ~~------~~~~l~~~~-~~~~~~~~~-------~~~~--~~~~~~~~~---~~e 73 (327)
T TIGR03586 13 NGSLERALAMIEAAKAAGADAIKLQTY------TPDTITLDS-DRPEFIIKG-------GLWD--GRTLYDLYQ---EAH 73 (327)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEeeec------cHHHhhccc-ccccccccc-------CCcC--CccHHHHHH---Hhh
Confidence 468889999999999999998754321 111110000 000000000 0000 000111111 122
Q ss_pred CCHHH---HHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 215 LNWKD---VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 215 ~~~~~---i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
+.++. +...++..+++++ =.+++.+.+..+.+.|++.+.+... -...+..|..+.+. ..||+.+-|
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG 142 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIF-SSPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTG 142 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECC
Confidence 34444 5555777788876 3457788899999999999999542 12345667766553 689999999
Q ss_pred CCCHHHHHHHHH----cCCCEEEE
Q 017434 292 VRRGTDVFKALA----LGASGVFV 311 (371)
Q Consensus 292 I~~~~dv~kal~----lGAd~V~i 311 (371)
..+.+++..++. .|..-|.+
T Consensus 143 ~~t~~Ei~~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 143 IATLEEIQEAVEACREAGCKDLVL 166 (327)
T ss_pred CCCHHHHHHHHHHHHHCCCCcEEE
Confidence 999999988776 47644544
No 430
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.00 E-value=1.4 Score=39.57 Aligned_cols=79 Identities=29% Similarity=0.249 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCC-EEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHH
Q 017434 218 KDVKWLQTITSLP-ILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGT 296 (371)
Q Consensus 218 ~~i~~ir~~~~~p-v~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~ 296 (371)
+.++.+++....- +-...+...++++.+.++|+|+|+.... ++ .+.++++.. .++.+. | +.|.+
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~-------~~----~~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV-------DP----ELIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC-------CH----HHHHHHHHc--CCCEEc-C-cCCHH
Confidence 4466666553321 2222346779999999999999965221 11 122333333 455543 4 99999
Q ss_pred HHHHHHHcCCCEEEE
Q 017434 297 DVFKALALGASGVFV 311 (371)
Q Consensus 297 dv~kal~lGAd~V~i 311 (371)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999997
No 431
>PLN02535 glycolate oxidase
Probab=92.93 E-value=0.84 Score=45.33 Aligned_cols=91 Identities=19% Similarity=0.305 Sum_probs=62.0
Q ss_pred HHHHHhhcCCCEEEEEcc------CHHHHHHHHHhCCCEEEEeC----CCCcC--------------CC-----------
Q 017434 220 VKWLQTITSLPILVKGVL------TAEDASLAIQYGAAGIIVSN----HGARQ--------------LD----------- 264 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v~------~~e~a~~a~~~Gad~I~vs~----~gg~~--------------~~----------- 264 (371)
++.+.+..+.|.+++.-. +.+..+++.++|+.+|++.- .|.|. ..
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 334444445678887642 33457889999999999842 11110 00
Q ss_pred ------------CccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 265 ------------YVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 265 ------------~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+..
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEeC
Confidence 0123677788887765 689888 668999999999999999998863
No 432
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=92.85 E-value=5.5 Score=41.28 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCCcEEEecCCCCHHHHHHHHH------cC-----CCEEEEchhHHHh
Q 017434 282 GRVPVFLDGGVRRGTDVFKALA------LG-----ASGVFVGRPVPFS 318 (371)
Q Consensus 282 ~~i~via~GGI~~~~dv~kal~------lG-----Ad~V~iGr~~l~~ 318 (371)
++|-+|+-|||.+++|...+|- .| .|++.+|+..|..
T Consensus 212 ~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 212 DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 4899999999999999998763 23 4999999987753
No 433
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.84 E-value=0.92 Score=43.68 Aligned_cols=112 Identities=18% Similarity=0.085 Sum_probs=64.8
Q ss_pred CCCceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHh-hhhcCCCCccccccccccccCCCCCCCc
Q 017434 124 GPGIRFFQLYVTKHRNVDAQLVKRAERA--GFKAIALTVDTPRLGRREADI-KNRFVLPPHLTLKNYEGLYIGKMDKTDD 200 (371)
Q Consensus 124 ~~~~~~~QLy~~~d~~~~~~~~~~a~~a--G~~al~vtvd~p~~g~r~~d~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 200 (371)
...|.++.|-+..|.+.+.++++.+.++ |++++.++ ++-..+... |. +.. |. +...+ .....
T Consensus 156 ~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~i-d~~~~~---~~-~~~~~---------~~gG~ 220 (294)
T cd04741 156 YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVL-DPERET---VV-LKPKT---------GFGGL 220 (294)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccc-cCCCCC---cc-cCCCC---------CCCCc
Confidence 3468999997766766777888888888 88888753 221110000 00 000 00 00000 00000
Q ss_pred chhhhHhhhhcccCCCHHHHHHHHhhcC--CCEEEE-EccCHHHHHHHHHhCCCEEEEeC
Q 017434 201 SGLASYVANQIDRSLNWKDVKWLQTITS--LPILVK-GVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~i~~ir~~~~--~pv~vK-~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
+| ..+ ....++.++.+++.++ +||+.= ++.+.+|+...+.+|||+|.+..
T Consensus 221 SG--~~i-----~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 221 AG--AYL-----HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred Cc--hhh-----HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 00 010 1124567788888884 897754 47899999999999999999853
No 434
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=92.75 E-value=0.86 Score=44.14 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=62.2
Q ss_pred HHHHHHHhhcC--CCEEEEEccCH----HHHHHHHHh---CCCEEEEeCCCCcCCCCccchHHHHHHHHHHh---c-CCC
Q 017434 218 KDVKWLQTITS--LPILVKGVLTA----EDASLAIQY---GAAGIIVSNHGARQLDYVPATVMALEEVVQAA---K-GRV 284 (371)
Q Consensus 218 ~~i~~ir~~~~--~pv~vK~v~~~----e~a~~a~~~---Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 284 (371)
+.++.+++..+ .|+.+ .+-+. +++..+.++ ++|.|.+.|.+++ .| ...+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G-~~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RG-VFRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CC-CHHHHHHHHHHHHHhCCCCCe
Confidence 34677777664 45543 33333 356666666 4899999886432 11 1334445555443 2 367
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 285 PVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 285 ~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.|+++||| +.+.+.++..+|+|.+.+|+....
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 89999999 689999998899999999996653
No 435
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.73 E-value=0.41 Score=44.35 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=53.7
Q ss_pred HHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 245 AIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 245 a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
....++|+|+++++. .+.++..+.|..+++.. ++||++.+|+. .+.+.+.|.. ||++.+|+.+=.
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv~-~eN~~~~l~~-adG~IvgT~lK~ 237 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGVN-PENIEELLKI-ADGVIVGTSLKK 237 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCCC-HHHHHHHHHH-cCceEEEEEEcc
Confidence 566789999998752 24578889999888887 59999999996 8899988888 999999997643
No 436
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=92.71 E-value=0.45 Score=46.62 Aligned_cols=90 Identities=13% Similarity=0.258 Sum_probs=70.3
Q ss_pred CHHHHHHHHhh-cCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 216 NWKDVKWLQTI-TSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 216 ~~~~i~~ir~~-~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
+.++++.+|+. +++||+.|. +.++.....+..+|||+|-+.-. .+ ....+..+.++...+ .+.+++. |+
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaa---iL--~~~~L~~l~~~A~~L--Gme~LVE--VH 238 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAA---VL--PDLDIKYMLKICKSL--GMAALIE--VH 238 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHH---hC--CHHHHHHHHHHHHHc--CCeEEEE--eC
Confidence 57899999998 899999997 68899999999999999976321 01 122455566666666 5667664 89
Q ss_pred CHHHHHHHHHc-CCCEEEEchh
Q 017434 294 RGTDVFKALAL-GASGVFVGRP 314 (371)
Q Consensus 294 ~~~dv~kal~l-GAd~V~iGr~ 314 (371)
+.+++.+++.+ ||+.++|=.-
T Consensus 239 ~~~ElerAl~~~ga~iIGINNR 260 (338)
T PLN02460 239 DEREMDRVLGIEGVELIGINNR 260 (338)
T ss_pred CHHHHHHHHhcCCCCEEEEeCC
Confidence 99999999998 9999998763
No 437
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=92.69 E-value=0.69 Score=49.72 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=69.8
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
++++++.+|+.+++||+.|. +.++..+..+..+|||+|-+.-. .+ ....+..+.+....+ .+.+++. |++
T Consensus 99 s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~---~L--~~~~l~~l~~~a~~l--Gme~LvE--vh~ 169 (695)
T PRK13802 99 SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVA---AL--DDAQLKHLLDLAHEL--GMTVLVE--THT 169 (695)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHh---hc--CHHHHHHHHHHHHHc--CCeEEEE--eCC
Confidence 57899999999999999997 67889999999999999987421 01 122455555555555 5667764 899
Q ss_pred HHHHHHHHHcCCCEEEEch
Q 017434 295 GTDVFKALALGASGVFVGR 313 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr 313 (371)
.+|+.+++.+||+.++|=.
T Consensus 170 ~~el~~a~~~ga~iiGINn 188 (695)
T PRK13802 170 REEIERAIAAGAKVIGINA 188 (695)
T ss_pred HHHHHHHHhCCCCEEEEeC
Confidence 9999999999999998875
No 438
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.67 E-value=1 Score=44.73 Aligned_cols=42 Identities=24% Similarity=0.451 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 269 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 269 ~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+|+.|..+++.- ++|||+ .||.+.+|+.+++.+|+|+|.+..
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 577788887765 789888 557899999999999999999875
No 439
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.66 E-value=9 Score=38.51 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=66.1
Q ss_pred CHHHHHHHHhh--cCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCC-------------CccchHHHHHHHHHHh
Q 017434 216 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 280 (371)
Q Consensus 216 ~~~~i~~ir~~--~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 280 (371)
+|+=++.++.. -++++-+=.+.+.+.|..|.++|++.|...- ||-.| ..-|.+..+.++.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPfV--gRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPFV--GRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 45544444432 2788888888999999999999999888642 22111 1123455666666554
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhh
Q 017434 281 K---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSL 319 (371)
Q Consensus 281 ~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~ 319 (371)
. -+..|++ ..+|+..++.+ .+|||.+-|.-.++..+
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L 256 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQL 256 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHH
Confidence 2 1344444 56999999998 47999999887666543
No 440
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.63 E-value=0.93 Score=44.58 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred HhccCCCceEEEEee------cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccC
Q 017434 120 VSSTGPGIRFFQLYV------TKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIG 193 (371)
Q Consensus 120 i~~~~~~~~~~QLy~------~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~ 193 (371)
|++..+.+..+.+-. ..+.+...+++++++++|++.+.|+..+... +. . .
T Consensus 202 ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~--~-------- 257 (337)
T PRK13523 202 VKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I--D-------- 257 (337)
T ss_pred HHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C--C--------
Confidence 334334455666543 1255667788888888999988876543110 00 0 0
Q ss_pred CCCCCCcchhhhHhhhhcccCCCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhC-CCEEEE
Q 017434 194 KMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYG-AAGIIV 255 (371)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~G-ad~I~v 255 (371)
..+.+.|+..+.+|+.+++||+.-+ +.++++++.+++.| +|.|.+
T Consensus 258 -----------------~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 258 -----------------VYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred -----------------CCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 0112356778899999999987665 46899999999887 999866
No 441
>PLN02858 fructose-bisphosphate aldolase
Probab=92.63 E-value=19 Score=42.18 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=74.4
Q ss_pred CHHHHHHHH-HhCCCEEEEeC---CCCcCCCCccchHHHHHHHHHHhc-CCCcEEEecC--CCCHHHHHHHHHcCCCEEE
Q 017434 238 TAEDASLAI-QYGAAGIIVSN---HGARQLDYVPATVMALEEVVQAAK-GRVPVFLDGG--VRRGTDVFKALALGASGVF 310 (371)
Q Consensus 238 ~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~i~via~GG--I~~~~dv~kal~lGAd~V~ 310 (371)
++++|+..+ +.|+|.+-++- ||-+......-.++.|.+|++.+. .++|+..=|| +. -+++.|++.+|..-|-
T Consensus 1251 ~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~KiN 1329 (1378)
T PLN02858 1251 DVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKFN 1329 (1378)
T ss_pred CHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEEE
Confidence 567877655 57999999874 554421111126788999999883 2589888774 54 5778899999999999
Q ss_pred EchhHHHhhh----cCC----hHHHHHHHHHHHHHHHHHHHHhCCC
Q 017434 311 VGRPVPFSLA----VDG----EAGVRKVLQMLRDEFELTMALSGCR 348 (371)
Q Consensus 311 iGr~~l~~~~----~~G----~~gv~~~l~~l~~el~~~m~~~G~~ 348 (371)
+++-+..+.. ..+ ..-.....+.+++-.+..|..+|..
T Consensus 1330 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1330 VNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred eCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997654321 111 1223445566777888888888754
No 442
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=92.57 E-value=0.35 Score=45.43 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=69.1
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
..+.++.+++.+.+||..|. +.++.....+..+|+|+|-+--.- -....+..+.+....+ .+.++.. |++
T Consensus 95 s~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~-----L~~~~l~el~~~A~~L--Gm~~LVE--Vh~ 165 (254)
T COG0134 95 SFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA-----LDDEQLEELVDRAHEL--GMEVLVE--VHN 165 (254)
T ss_pred CHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHh-----cCHHHHHHHHHHHHHc--CCeeEEE--ECC
Confidence 56889999999999999997 578899999999999998652100 0111234444444444 5666664 899
Q ss_pred HHHHHHHHHcCCCEEEEchhHHH
Q 017434 295 GTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
.+++.+++.+||+.++|-.-=+.
T Consensus 166 ~eEl~rAl~~ga~iIGINnRdL~ 188 (254)
T COG0134 166 EEELERALKLGAKIIGINNRDLT 188 (254)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcc
Confidence 99999999999999999874443
No 443
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=92.56 E-value=1.8 Score=39.77 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=46.7
Q ss_pred ccCHHHHHHHHHhCCCEEEEeC---CCCcC-CCCccchHH---HHHHHHHHh---cC-CCcEEEecCCCCHHHHHHHHH-
Q 017434 236 VLTAEDASLAIQYGAAGIIVSN---HGARQ-LDYVPATVM---ALEEVVQAA---KG-RVPVFLDGGVRRGTDVFKALA- 303 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~---~gg~~-~~~~~~~~~---~l~~i~~~~---~~-~i~via~GGI~~~~dv~kal~- 303 (371)
+.++++|+.+.++|+|.|+.+- .||.- ...+.+.-+ .+..+.++. .. -+++.--|=|.+++|..--+.
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 4799999999999999998752 23321 112222222 222222222 22 356666666999999987776
Q ss_pred -cCCCEEEEch
Q 017434 304 -LGASGVFVGR 313 (371)
Q Consensus 304 -lGAd~V~iGr 313 (371)
-|+|+..=++
T Consensus 243 c~~~~gfygas 253 (276)
T COG5564 243 CPGCDGFYGAS 253 (276)
T ss_pred CCCCCcccccc
Confidence 4788754333
No 444
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.51 E-value=1.1 Score=42.09 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 218 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
..+....+..++.++ -...+.+.+..+.+.|++++.|... -...+..|..+++ ...|||.+-|..+-++
T Consensus 59 ~~L~~~~~~~gi~f~-stpfd~~s~d~l~~~~~~~~KIaS~-------dl~n~~lL~~~A~---tgkPvIlSTG~stl~E 127 (241)
T PF03102_consen 59 KELFEYCKELGIDFF-STPFDEESVDFLEELGVPAYKIASG-------DLTNLPLLEYIAK---TGKPVILSTGMSTLEE 127 (241)
T ss_dssp HHHHHHHHHTT-EEE-EEE-SHHHHHHHHHHT-SEEEE-GG-------GTT-HHHHHHHHT---T-S-EEEE-TT--HHH
T ss_pred HHHHHHHHHcCCEEE-ECCCCHHHHHHHHHcCCCEEEeccc-------cccCHHHHHHHHH---hCCcEEEECCCCCHHH
Confidence 344444445566554 2346788899999999999999532 2334556666654 3689999999999999
Q ss_pred HHHHHH
Q 017434 298 VFKALA 303 (371)
Q Consensus 298 v~kal~ 303 (371)
+.+++.
T Consensus 128 I~~Av~ 133 (241)
T PF03102_consen 128 IERAVE 133 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988876
No 445
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=92.45 E-value=2.3 Score=37.47 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCC
Q 017434 217 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNH 258 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~ 258 (371)
.+.++++.++++.|++..| +.+.|++..|+++||-+++.||.
T Consensus 133 Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 133 PKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred HHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 4778999999999999887 47889999999999999987764
No 446
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.43 E-value=1.6 Score=41.35 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 239 AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 239 ~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
.+.|+...+.||++|.+...... -..+++.+..+++.+ ++||+.--=|..+.++..+..+|||+|.+.-..+
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~----f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l 144 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERF----FQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAAL 144 (260)
T ss_pred HHHHHHHHhCCCeEEEEeccccc----CCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccC
Confidence 35578889999999998543211 112367788888877 7999987788899999999999999999876543
No 447
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.37 E-value=1.4 Score=40.20 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=35.9
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEE
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIV 255 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~v 255 (371)
..+.++.+++.++.|+++.+ +.++|+++.+.++|+|+|++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 36789999999999999996 67999999999999999987
No 448
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.32 E-value=0.98 Score=41.09 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=47.0
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEe-----cCC-CCH-------HHHHHHH
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD-----GGV-RRG-------TDVFKAL 302 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~-----GGI-~~~-------~dv~kal 302 (371)
+.+.+++..|.+.|||.|-+-.+- ...+-.|+...+..+++.. ++||.+. |++ .|. +|+..+.
T Consensus 7 v~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~ 82 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLR 82 (201)
T ss_dssp ESSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHH
Confidence 368999999999999999985421 1112256778888888866 6887764 222 222 4677788
Q ss_pred HcCCCEEEEch
Q 017434 303 ALGASGVFVGR 313 (371)
Q Consensus 303 ~lGAd~V~iGr 313 (371)
.+|||++.+|=
T Consensus 83 ~~GadG~VfG~ 93 (201)
T PF03932_consen 83 ELGADGFVFGA 93 (201)
T ss_dssp HTT-SEEEE--
T ss_pred HcCCCeeEEEe
Confidence 89999999994
No 449
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=92.31 E-value=0.6 Score=47.77 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=69.3
Q ss_pred CHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCC
Q 017434 216 NWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRR 294 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~ 294 (371)
++++++.+|+.+++||+.|- +.++.....+..+|||+|-+.-.- -.+..+..+.+....+ .+..++ -|++
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~-----L~~~~l~~l~~~a~~l--Gl~~lv--Evh~ 168 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSV-----LDDEQYRQLAAVAHSL--NMGVLT--EVSN 168 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHh-----CCHHHHHHHHHHHHHc--CCcEEE--EECC
Confidence 57889999999999999997 578888999999999999874210 1122455555555555 466666 4899
Q ss_pred HHHHHHHHHcCCCEEEEchh
Q 017434 295 GTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 295 ~~dv~kal~lGAd~V~iGr~ 314 (371)
.+|+.+++.+||+.++|=.-
T Consensus 169 ~~El~~al~~~a~iiGiNnR 188 (454)
T PRK09427 169 EEELERAIALGAKVIGINNR 188 (454)
T ss_pred HHHHHHHHhCCCCEEEEeCC
Confidence 99999999999999988763
No 450
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.27 E-value=6.2 Score=36.34 Aligned_cols=92 Identities=13% Similarity=-0.023 Sum_probs=54.3
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cCHH-HHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LTAE-DASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~~e-~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
..+.++++++.++.|+-+-.. .+++ ....+.++|+|+|++ |.+. +........+..+++. .+-+-.+-.-.
T Consensus 53 g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~~ 125 (229)
T PLN02334 53 GPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNPG 125 (229)
T ss_pred CHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECCC
Confidence 347789998887777665553 3444 477889999999988 4431 0011223444444432 23233332223
Q ss_pred CHHHHHHHHHcC--CCEEEEchh
Q 017434 294 RGTDVFKALALG--ASGVFVGRP 314 (371)
Q Consensus 294 ~~~dv~kal~lG--Ad~V~iGr~ 314 (371)
|..+..+.+..+ +|.|++|.-
T Consensus 126 t~~~~~~~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 126 TPVEAVEPVVEKGLVDMVLVMSV 148 (229)
T ss_pred CCHHHHHHHHhccCCCEEEEEEE
Confidence 556666655444 999999863
No 451
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=92.25 E-value=2 Score=41.71 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=43.9
Q ss_pred CCc-EEEecCCCCHHHHHHHH----HcCCC--EEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 283 RVP-VFLDGGVRRGTDVFKAL----ALGAS--GVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 283 ~i~-via~GGI~~~~dv~kal----~lGAd--~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
++| |+.++|+. .+.+.+.| ..||. +|..||+.=+ ++|.-++..=.+..+.||.-.|..++++|+.
T Consensus 242 ~~P~i~LSaGV~-~~~F~~~l~~A~~aGa~fnGvL~GRAtW~-------~~v~~~~~~g~~a~~~wL~t~g~~ni~~Ln~ 313 (329)
T PRK04161 242 HLPYIYLSAGVS-AKLFQETLVFAAEAGAQFNGVLCGRATWA-------GSVPVYITEGEEAARKWLCTEGFQNIDELNR 313 (329)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHhcCCCcccEEeehhhhh-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 577 77888886 44444443 37998 9999997643 2233232333556677788888888888876
Q ss_pred cc
Q 017434 356 NH 357 (371)
Q Consensus 356 ~~ 357 (371)
..
T Consensus 314 vl 315 (329)
T PRK04161 314 VL 315 (329)
T ss_pred HH
Confidence 54
No 452
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=92.09 E-value=0.28 Score=48.17 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=65.9
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhh
Q 017434 126 GIRFFQLYVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLAS 205 (371)
Q Consensus 126 ~~~~~QLy~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (371)
.|.|+.|.+..+.+.+.++++.++++|+++++++ ++-. . + +. +.-| ... + .....+| .
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~~~-~~~--~---------~~GGlSG--~ 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQGP-KNS--D---------ETGGLSG--K 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---ccCc-ccc--C---------CCCcccC--H
Confidence 5889999877666678899999999999999874 3321 1 0 00 0000 000 0 0000011 0
Q ss_pred HhhhhcccCCCHHHHHHHHhhc--CCCEE-EEEccCHHHHHHHHHhCCCEEEEe
Q 017434 206 YVANQIDRSLNWKDVKWLQTIT--SLPIL-VKGVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 206 ~~~~~~~~~~~~~~i~~ir~~~--~~pv~-vK~v~~~e~a~~a~~~Gad~I~vs 256 (371)
.+ .+...+.+..+++.. ++|++ +.++.+.+|+...+.+||+.|.+.
T Consensus 269 ~i-----~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 269 PL-----QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HH-----HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 11 123456788887776 58887 556899999999999999999874
No 453
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.03 E-value=0.69 Score=44.58 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=59.1
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc-----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR-----QLDYVPATV----MALEEVVQAAKGRVPVFLDG--GVRRGT 296 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~-----~~~~~~~~~----~~l~~i~~~~~~~i~via~G--GI~~~~ 296 (371)
+-|+++-++.+.-.|+.+.++|.+++.+|+.+.. .-|.+.-++ ..+.+|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 4688888888899999999999999999764321 123333333 3345555555 79999987 666666
Q ss_pred HH----HHHHHcCCCEEEEch
Q 017434 297 DV----FKALALGASGVFVGR 313 (371)
Q Consensus 297 dv----~kal~lGAd~V~iGr 313 (371)
++ .++..+||.++.|--
T Consensus 93 ~v~r~V~~~~~aGaagi~IED 113 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLED 113 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEEC
Confidence 65 455668999998843
No 454
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=91.93 E-value=2.2 Score=41.38 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=42.7
Q ss_pred CCc-EEEecCCCCHHHHHHHH----HcCC--CEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhhhcc
Q 017434 283 RVP-VFLDGGVRRGTDVFKAL----ALGA--SGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 355 (371)
Q Consensus 283 ~i~-via~GGI~~~~dv~kal----~lGA--d~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~l~~ 355 (371)
++| |+.++|+. .+.+.+.| ..|| ++|..||+.=+ ++|..++..=.+..+.||.-.|..++++|+.
T Consensus 240 ~~P~i~LSaGV~-~~~F~~~l~~A~~aGa~fsGvL~GRAtW~-------~~v~~~~~~g~~~~~ewL~t~g~~ni~~Ln~ 311 (324)
T PRK12399 240 HLPYIYLSAGVS-AELFQETLVFAHEAGAKFNGVLCGRATWA-------GSVKVYIEQGEAAAREWLRTEGFENIDELNK 311 (324)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHHcCCCcceEEeehhhhH-------hhhhhhhcCCHHHHHHHHHHHhHHHHHHHHH
Confidence 577 77888886 44444444 4699 79999997643 2233233333455666777777777777765
Q ss_pred cc
Q 017434 356 NH 357 (371)
Q Consensus 356 ~~ 357 (371)
..
T Consensus 312 vl 313 (324)
T PRK12399 312 VL 313 (324)
T ss_pred HH
Confidence 43
No 455
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.90 E-value=0.74 Score=43.06 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=56.6
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcC----CCCccchHHH----HHHHHHHhcCCCcEEEecCCCCH---H
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQ----LDYVPATVMA----LEEVVQAAKGRVPVFLDGGVRRG---T 296 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~----~~~~~~~~~~----l~~i~~~~~~~i~via~GGI~~~---~ 296 (371)
+-|+++-++.+.-.|+.+.++|+|.|.+++.+... -|.+.-+++. +..|.+.+ ..+||++|.---++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 56888888888889999999999999998753321 2333334433 33333333 14799999844433 5
Q ss_pred H----HHHHHHcCCCEEEEc
Q 017434 297 D----VFKALALGASGVFVG 312 (371)
Q Consensus 297 d----v~kal~lGAd~V~iG 312 (371)
+ +.+.+.+||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 456667999999994
No 456
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=91.86 E-value=5.5 Score=37.27 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG 290 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G 290 (371)
+.++...++|||.|.+- ++ +.+.+.++.+.+ ++|+++.|
T Consensus 160 ~Ra~ay~~AGAd~i~~e---------~~-~~e~~~~i~~~~--~~P~~~~g 198 (240)
T cd06556 160 ADALAYAPAGADLIVME---------CV-PVELAKQITEAL--AIPLAGIG 198 (240)
T ss_pred HHHHHHHHcCCCEEEEc---------CC-CHHHHHHHHHhC--CCCEEEEe
Confidence 34677889999999983 23 567788888887 68998866
No 457
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=91.86 E-value=1.9 Score=38.27 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHHHHhhcCCCEEEEEc-cCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCH
Q 017434 217 WKDVKWLQTITSLPILVKGV-LTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRG 295 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~ 295 (371)
.+.|++|.+.+.+||..|.. .+.-+|+.+...|+|+|.=|-- + .|. +.-..|-+.. -++|.++ |-++.
T Consensus 60 P~~I~eI~~aVsIPVMAK~RIGHfvEAqiLealgVD~IDESEV----L--TpA--D~~~HI~K~~-F~vPFVc--GarnL 128 (208)
T PF01680_consen 60 PKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV----L--TPA--DEENHIDKHN-FKVPFVC--GARNL 128 (208)
T ss_dssp HHHHHHHHHH-SSEEEEEEETT-HHHHHHHHHTT-SEEEEETT----S----S---SS----GGG--SS-EEE--EESSH
T ss_pred HHHHHHHHHheEeceeeccccceeehhhhHHHhCCceeccccc----c--ccc--cccccccchh-CCCCeEe--cCCCH
Confidence 46789999999999999985 6778999999999999987641 0 011 1111122221 2678776 77899
Q ss_pred HHHHHHHHcCCCEE
Q 017434 296 TDVFKALALGASGV 309 (371)
Q Consensus 296 ~dv~kal~lGAd~V 309 (371)
.+++.-+.-||..+
T Consensus 129 GEALRRI~EGAaMI 142 (208)
T PF01680_consen 129 GEALRRIAEGAAMI 142 (208)
T ss_dssp HHHHHHHHTT-SEE
T ss_pred HHHHhhHHhhhhhh
Confidence 99999999998754
No 458
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.73 E-value=7.6 Score=36.10 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (371)
.+.+...++++...++|++.|.++...+. +.. + ...-
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~----------------~~~-------------------------p--~~~~ 52 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASP----------------KAV-------------------------P--QMED 52 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCc----------------ccc-------------------------c--cCCC
Confidence 36777788999999999999887542211 000 0 0112
Q ss_pred CHHHHHHHHhhc-CCCEEEEEccC-HHHHHHHHHhCCCEEEEeCCCCcC-----CCCcc-chHHHHHHHHHHhc-CCCcE
Q 017434 216 NWKDVKWLQTIT-SLPILVKGVLT-AEDASLAIQYGAAGIIVSNHGARQ-----LDYVP-ATVMALEEVVQAAK-GRVPV 286 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~v~~-~e~a~~a~~~Gad~I~vs~~gg~~-----~~~~~-~~~~~l~~i~~~~~-~~i~v 286 (371)
.++.++.+++.. +.++. -.+.+ .++++.+.++|++.|.++..+... +..+. ..++.+.+..+... ..+++
T Consensus 53 ~~~~i~~l~~~~~~~~~~-~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v 131 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQ-ALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEV 131 (265)
T ss_pred HHHHHHHHHhccCCcEEE-EEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 467788888875 34443 23334 788999999999999997643210 00111 12222222222211 13444
Q ss_pred EEec-CC----CCHHHHH----HHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHH
Q 017434 287 FLDG-GV----RRGTDVF----KALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEF 338 (371)
Q Consensus 287 ia~G-GI----~~~~dv~----kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el 338 (371)
..+- .+ .+.+++. ++.++|++.+.+.-..- .--++.+.++++.+++.+
T Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 132 EGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVG----LATPEEVAELVKALREAL 188 (265)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcC----CcCHHHHHHHHHHHHHhC
Confidence 3333 23 3344333 34558999998876421 123566666666665543
No 459
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=91.73 E-value=2.1 Score=42.03 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=35.6
Q ss_pred cCCCHHHHHHHHhhc-CCCEEEEE-ccCHHHHHHHHHhCCCEEEEe
Q 017434 213 RSLNWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~-~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs 256 (371)
++..|+.++.+++.+ ++||+.=| +.++++++.+++ |+|+|.+.
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 445789999999886 89988754 689999999887 79999984
No 460
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=91.58 E-value=2.2 Score=41.49 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=68.9
Q ss_pred CHHHHHHHHhhc--CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCC-------------ccchHHHHHHHHHHh
Q 017434 216 NWKDVKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDY-------------VPATVMALEEVVQAA 280 (371)
Q Consensus 216 ~~~~i~~ir~~~--~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 280 (371)
+|+=++.++... ++++-+=.+.+.+.+..|.++|++.|... -||-.|+ .-+.+..+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 555555444432 78888888999999999999999988864 2221111 124555666666554
Q ss_pred c--C-CCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 281 K--G-RVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 281 ~--~-~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
. + +. .+....+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 212 ~~~~~~T-~vmaASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 212 KKFGYKT-KVMGASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHcCCCc-EEEecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 2 2 34 444567999999997 579999999988876654
No 461
>PRK05269 transaldolase B; Provisional
Probab=91.48 E-value=14 Score=36.08 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=68.5
Q ss_pred CHHHHHHHHhhc--CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCC-------------CccchHHHHHHHHHHh
Q 017434 216 NWKDVKWLQTIT--SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 280 (371)
Q Consensus 216 ~~~~i~~ir~~~--~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 280 (371)
+|+=++.++... ++++-+=.+.+.+.+..|.++|++.|...- ||-.| .+.+.+..+.++.+.+
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfV--gRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFV--GRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEeec--cHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 455444443322 788888888999999999999999888642 22111 1334556666666554
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 281 K---GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 281 ~---~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
. -+..|++ ..+|+..++.+ ..|+|.|-+.-.++..+.
T Consensus 214 k~~~~~t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMG-ASFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 2 2455655 57999999997 569999988887776654
No 462
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.45 E-value=1.2 Score=41.73 Aligned_cols=74 Identities=23% Similarity=0.236 Sum_probs=52.8
Q ss_pred ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEe-----cCC-CCH-------HHHHHHH
Q 017434 236 VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLD-----GGV-RRG-------TDVFKAL 302 (371)
Q Consensus 236 v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~-----GGI-~~~-------~dv~kal 302 (371)
+.+++++..|.+.|||.|-+-..- ...+-.|+...+..+++.+ ++||.+. |++ .+. .|+..+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~L--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~ 83 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAAP--KEGGLTPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVR 83 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccCc--CCCCcCCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 478999999999999999885320 1112256778888888876 6887764 332 222 4666777
Q ss_pred HcCCCEEEEch
Q 017434 303 ALGASGVFVGR 313 (371)
Q Consensus 303 ~lGAd~V~iGr 313 (371)
.+|||+|.+|-
T Consensus 84 ~~GadGvV~G~ 94 (248)
T PRK11572 84 ELGFPGLVTGV 94 (248)
T ss_pred HcCCCEEEEee
Confidence 79999999994
No 463
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.41 E-value=1.2 Score=41.58 Aligned_cols=85 Identities=26% Similarity=0.317 Sum_probs=56.7
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCC-HH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATV----MALEEVVQAAKGRVPVFLDG--GVRR-GT 296 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~i~via~G--GI~~-~~ 296 (371)
+.|+++-++.+.-.|+.+.++|.++|.+|+++-. ..|.+.-++ +.+.+|...+ ++||++|+ |..+ +.
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 4799999999999999999999999999864211 134333333 3455666666 79999987 6665 43
Q ss_pred ----HHHHHHHcCCCEEEEchh
Q 017434 297 ----DVFKALALGASGVFVGRP 314 (371)
Q Consensus 297 ----dv~kal~lGAd~V~iGr~ 314 (371)
.+.+...+|+.++.|---
T Consensus 86 ~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHcCCcEEEeecc
Confidence 344556689999998543
No 464
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.40 E-value=0.47 Score=43.86 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=38.2
Q ss_pred CCHHHHHHHHhhc-CCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 215 LNWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 215 ~~~~~i~~ir~~~-~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
...+.++.+++.+ +.|+++.+ +.+.|+++.+.++|+|.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 3578899999998 89999886 6899999999999999999965
No 465
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=91.30 E-value=2.8 Score=41.26 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=35.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhC-CCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYG-AAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~G-ad~I~vs 256 (371)
+.++..+.+|+.+++||++-+..++++++.+++.| +|.|.++
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 272 QPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred cchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 45678899999999999988876799999999876 9999873
No 466
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=91.28 E-value=5.6 Score=37.74 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec-CCCCHHHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG-GVRRGTDVF 299 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G-GI~~~~dv~ 299 (371)
++++.+.++||++|.+- +.+ .+...+|.+.+ ++|+|.-| |-.+-.+++
T Consensus 164 ~~A~a~e~AGA~~ivlE---------~vp-~~~a~~It~~l--~iP~iGIGaG~~~dGQvl 212 (263)
T TIGR00222 164 EDALALEEAGAQLLVLE---------CVP-VELAAKITEAL--AIPVIGIGAGNVCDGQIL 212 (263)
T ss_pred HHHHHHHHcCCCEEEEc---------CCc-HHHHHHHHHhC--CCCEEeeccCCCCCceee
Confidence 45788899999999983 234 37778888888 79999876 444444444
No 467
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.26 E-value=2.5 Score=41.71 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=58.6
Q ss_pred CCEEEEEc------cCHHHHHHHHHhCCCEEEEeCC----CCc--------CCC-------------------------C
Q 017434 229 LPILVKGV------LTAEDASLAIQYGAAGIIVSNH----GAR--------QLD-------------------------Y 265 (371)
Q Consensus 229 ~pv~vK~v------~~~e~a~~a~~~Gad~I~vs~~----gg~--------~~~-------------------------~ 265 (371)
.|+++-.- .+.+..+++.++|+++|+++-- |-| +.. .
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57766442 2245578899999999999621 111 100 0
Q ss_pred ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 266 VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 266 ~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|+|.+..
T Consensus 198 ~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 198 PTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 124577788888776 7899987 68899999999999999999875
No 468
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.22 E-value=0.47 Score=43.77 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhc-CCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 216 NWKDVKWLQTIT-SLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 216 ~~~~i~~ir~~~-~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
..+.++.+++.+ +.|+++.+ +.++|+++.+.++|||.|++++
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 457799999998 99999986 5799999999999999999965
No 469
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=91.12 E-value=0.49 Score=42.07 Aligned_cols=41 Identities=34% Similarity=0.453 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 217 WKDVKWLQTITSLPILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+.++++++.++.|++..| +.+.|++..++++|+++|..|+
T Consensus 129 p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 129 PKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 3567888888999999887 5789999999999999999875
No 470
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.08 E-value=2.9 Score=39.04 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=33.8
Q ss_pred HHHHHHHHhhc-CCCEEEEEc-cCHHHHHHHHHhCCCEEEEeC
Q 017434 217 WKDVKWLQTIT-SLPILVKGV-LTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 217 ~~~i~~ir~~~-~~pv~vK~v-~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.+.++++|+.. +.|+.+-+. .++++++.+.++|+|++++..
T Consensus 173 ~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 173 ERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred HHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 45688888877 579888764 599999999999999999853
No 471
>PRK12346 transaldolase A; Provisional
Probab=91.06 E-value=2.9 Score=40.71 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCHHHHHHHHhh--cCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCC-------------CccchHHHHHHHHHH
Q 017434 215 LNWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQA 279 (371)
Q Consensus 215 ~~~~~i~~ir~~--~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~ 279 (371)
.+|+=++.++.. -++++-+=.+++.+.+..|.++|++.|... -||-.+ .+.+.+..+.++.+.
T Consensus 134 aT~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~ 211 (316)
T PRK12346 134 STWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDY 211 (316)
T ss_pred CCHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHH
Confidence 356655555443 278888888999999999999999998764 222111 134455666666655
Q ss_pred hc--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 280 AK--GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 280 ~~--~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
.. +--+.|....+|+..++. + .+|+|.+-+.-.++..+.
T Consensus 212 ~k~~~~~T~Vm~ASfRn~~qi~-a-laG~d~lTi~p~ll~~L~ 252 (316)
T PRK12346 212 YKQHRYETIVMGASFRRTEQIL-A-LAGCDRLTISPNLLKELQ 252 (316)
T ss_pred HHHcCCCcEEEecccCCHHHHH-H-HhCCCEEeCCHHHHHHHH
Confidence 42 212444456699999998 3 469999999987776654
No 472
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=91.05 E-value=3 Score=40.64 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=68.5
Q ss_pred CHHHHHHHHhh--cCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCC-------------CccchHHHHHHHHHHh
Q 017434 216 NWKDVKWLQTI--TSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLD-------------YVPATVMALEEVVQAA 280 (371)
Q Consensus 216 ~~~~i~~ir~~--~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 280 (371)
+|+=++.++.. -++++-+=.+++.+.+..|.++|++.|...- ||-.| ...+.+..+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFV--gRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFV--GRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeec--chHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 55555444433 2788888889999999999999999988642 22111 1134556666666554
Q ss_pred c--CCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHHHhhh
Q 017434 281 K--GRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLA 320 (371)
Q Consensus 281 ~--~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l~~~~ 320 (371)
. +--..+....+|+..++.+ .+|||.+-|.-.++..+.
T Consensus 212 k~~g~~T~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 212 KKHGYPTEVMGASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHcCCCcEEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 2 2123445567999999997 569999999877776554
No 473
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=91.04 E-value=15 Score=35.18 Aligned_cols=179 Identities=17% Similarity=0.127 Sum_probs=105.8
Q ss_pred cceeecccccccccCChHhHHHHHHHHH-cCCcEEe--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChH
Q 017434 75 MPIMIAPTAFQKMAHPEGECATARAASA-AGTIMTL--SS---WATSSVEEVS-------STGP--GIRFFQLYVTKHRN 139 (371)
Q Consensus 75 ~Pi~iAPm~~~~~~~~~~e~~~a~aa~~-~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~QLy~~~d~~ 139 (371)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+..++ ++ +.+.+.+|-. +..+ -+.++++-. .+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHH
Confidence 4667788755554555555688888888 8875443 32 3345665532 2222 356777643 4667
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCCCHHH
Q 017434 140 VDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSLNWKD 219 (371)
Q Consensus 140 ~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (371)
...++.+.++++|++++.+. .|.. + +. ..+-..+.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~--~P~y----------~--~~-------------------------------~~~~l~~~ 121 (293)
T PRK04147 87 EAQELAKYATELGYDAISAV--TPFY----------Y--PF-------------------------------SFEEICDY 121 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCcC----------C--CC-------------------------------CHHHHHHH
Confidence 77789999999999999874 2321 0 00 00112345
Q ss_pred HHHHHhhcCCCEEEEEc-------cCHHHHHHHHHh-CCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecC
Q 017434 220 VKWLQTITSLPILVKGV-------LTAEDASLAIQY-GAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGG 291 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v-------~~~e~a~~a~~~-Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GG 291 (371)
.+.+.+.+++|+++=.. .+++...++.+. .+-+|+-+. ..+..+.++.+..+ +..| .+|.
T Consensus 122 f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v-~~G~ 189 (293)
T PRK04147 122 YREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLI-YNGF 189 (293)
T ss_pred HHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEee
Confidence 66777778899988753 466777777653 233333321 12344455555443 3444 3342
Q ss_pred CCCHHHHHHHHHcCCCEEEEchh
Q 017434 292 VRRGTDVFKALALGASGVFVGRP 314 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~iGr~ 314 (371)
.+-+...+.+|+++++.+..
T Consensus 190 ---d~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 190 ---DEMFASGLLAGADGAIGSTY 209 (293)
T ss_pred ---hHHHHHHHHcCCCEEEechh
Confidence 35567788899999987764
No 474
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=91.04 E-value=5.2 Score=36.68 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=39.0
Q ss_pred cCCCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEe
Q 017434 213 RSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVS 256 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs 256 (371)
+..-++.++++++...+|++.=|..+++.+..+.++|+++|.|.
T Consensus 143 ~~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34568889999998889999888899999999999999999985
No 475
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.01 E-value=9.7 Score=34.44 Aligned_cols=125 Identities=18% Similarity=0.044 Sum_probs=74.2
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC
Q 017434 136 KHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL 215 (371)
Q Consensus 136 ~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (371)
.|.....+.++++.++|++.+-+.+- | + + +. .+..+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~---~--------------------------~~---~~~~~ 48 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVM---------D---G---H--------------------------FV---PNLTI 48 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCc---------c---C---C--------------------------cC---CCcCc
Confidence 56667788999999999999876320 0 0 0 00 01113
Q ss_pred CHHHHHHHHhhcCCCEEEEEc-cC-HHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCC
Q 017434 216 NWKDVKWLQTITSLPILVKGV-LT-AEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVR 293 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v-~~-~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~ 293 (371)
..+.++++++.++.|+.+-.. .+ .+....+.++|+|+|.+ |++.. ......+..+++ . .+.+..+-+-.
T Consensus 49 ~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~ 119 (220)
T PRK05581 49 GPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPA 119 (220)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCC
Confidence 457788888766545433222 22 34567778999999999 44310 111223333332 2 34444444556
Q ss_pred CHHHHHHHHHcCCCEEEEch
Q 017434 294 RGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 294 ~~~dv~kal~lGAd~V~iGr 313 (371)
+..+..+.+..++|.+.++.
T Consensus 120 t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 77788888877899888875
No 476
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=90.57 E-value=8.8 Score=33.60 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeC
Q 017434 215 LNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
..++.++++++..++|+++-|..+.+++..+.++|+|++.++.
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEeh
Confidence 4678888888878899998887788999999999999998853
No 477
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=90.47 E-value=1.3 Score=38.98 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHHHhhcCCCEEEEEc----cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCC
Q 017434 218 KDVKWLQTITSLPILVKGV----LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGV 292 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v----~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI 292 (371)
..+...++. +++.+-..- ...+. .....+.++|.|-+ +++ -....+.++.+.. ++|||+.|=|
T Consensus 86 ~~i~~Akk~-~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEv-------LPG--v~Pkvi~~i~~~t--~~piIAGGLi 153 (181)
T COG1954 86 NVIKKAKKL-GILAIQRLFILDSIALEKGIKQIEKSEPDFIEV-------LPG--VMPKVIKEITEKT--HIPIIAGGLI 153 (181)
T ss_pred HHHHHHHHc-CCceeeeeeeecHHHHHHHHHHHHHcCCCEEEE-------cCc--ccHHHHHHHHHhc--CCCEEecccc
Confidence 344444443 555554432 22333 35566789999988 222 1235666676665 7999999999
Q ss_pred CCHHHHHHHHHcCCCEEEEchhHHH
Q 017434 293 RRGTDVFKALALGASGVFVGRPVPF 317 (371)
Q Consensus 293 ~~~~dv~kal~lGAd~V~iGr~~l~ 317 (371)
++-+|+..||..||-+|--..--+|
T Consensus 154 ~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 154 ETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred ccHHHHHHHHHhCcEEEeecchhhc
Confidence 9999999999999999976544444
No 478
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.45 E-value=8.6 Score=37.60 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEec-CCCCHHHHHHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDG-GVRRGTDVFKA 301 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~G-GI~~~~dv~ka 301 (371)
++|+.+.++||++|++-. .+.. ...+|.+.+ .+|+|.-| |-.+-.+++-.
T Consensus 186 ~dA~ale~AGAf~ivLE~---------Vp~~-la~~It~~l--~IPtIGIGAG~~cDGQVLV~ 236 (332)
T PLN02424 186 ETALALQEAGCFAVVLEC---------VPAP-VAAAITSAL--QIPTIGIGAGPFCSGQVLVY 236 (332)
T ss_pred HHHHHHHHcCCcEEEEcC---------CcHH-HHHHHHHhC--CCCEEeecCCCCCCceeEeH
Confidence 568889999999999832 3333 667788887 79999876 54444555433
No 479
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.36 E-value=2.9 Score=39.79 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCCCEEEEEc--cCHHH----HHHHHHhCCCEEEEeCCCCcCCCC-ccchHHHHHHHHHHhcCCCcEEEe
Q 017434 217 WKDVKWLQTITSLPILVKGV--LTAED----ASLAIQYGAAGIIVSNHGARQLDY-VPATVMALEEVVQAAKGRVPVFLD 289 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v--~~~e~----a~~a~~~Gad~I~vs~~gg~~~~~-~~~~~~~l~~i~~~~~~~i~via~ 289 (371)
.+.++.+.+ ++.||.+|-- +++++ +++..+.|-..|.+--+|-+..+. -...+..++.+++.. ...|||+|
T Consensus 120 tdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~-t~lPVi~D 197 (281)
T PRK12457 120 TDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT-GDLPVIFD 197 (281)
T ss_pred HHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC-CCCCEEEe
Confidence 355555544 6899999965 67776 677788899999987666542111 233556677776642 25899987
Q ss_pred ---------------cCCCCH--HHHHHHHHcCCCEEEEch
Q 017434 290 ---------------GGVRRG--TDVFKALALGASGVFVGR 313 (371)
Q Consensus 290 ---------------GGI~~~--~dv~kal~lGAd~V~iGr 313 (371)
||-|.- .=+..+++.|||++++=.
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 444322 224467789999999986
No 480
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.25 E-value=4 Score=35.00 Aligned_cols=85 Identities=19% Similarity=0.226 Sum_probs=58.5
Q ss_pred HHHHHHHhhcCCCEEEEEc-cCHHH-HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc----CCCcEEEecC
Q 017434 218 KDVKWLQTITSLPILVKGV-LTAED-ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK----GRVPVFLDGG 291 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v-~~~e~-a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~----~~i~via~GG 291 (371)
+.+..+-+..+.-|+.-+. .++++ +..|++..+|.|.+|..-|. ..+..+.+.+.++ +++. +..||
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~GG 101 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVGG 101 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-EeecC
Confidence 5566666666777776664 56766 56677999999999975331 2344455554442 2444 47799
Q ss_pred CCCHHHHHHHHHcCCCEEE
Q 017434 292 VRRGTDVFKALALGASGVF 310 (371)
Q Consensus 292 I~~~~dv~kal~lGAd~V~ 310 (371)
+-.++|..+.-++|.+.+.
T Consensus 102 vip~~d~~~l~~~G~~~if 120 (143)
T COG2185 102 VIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred ccCchhHHHHHHhCcceee
Confidence 9999998888889998875
No 481
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.15 E-value=3.7 Score=38.76 Aligned_cols=71 Identities=24% Similarity=0.261 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEchhHH
Q 017434 240 EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 240 e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr~~l 316 (371)
+-|+...++||++|.|-.-. ..-..+++.|..+++.+ ++||..-==|-++.++.++..+|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 44788889999999986421 12234678888888887 7999998889999999999999999998765554
No 482
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=90.14 E-value=5.8 Score=39.13 Aligned_cols=112 Identities=13% Similarity=0.224 Sum_probs=77.2
Q ss_pred cCHHHHHHHH-HhCCCEEEEeC---CCCcCCCCcc----chHHHHHHHHHHhcCCCcEEEecCCCCH-------------
Q 017434 237 LTAEDASLAI-QYGAAGIIVSN---HGARQLDYVP----ATVMALEEVVQAAKGRVPVFLDGGVRRG------------- 295 (371)
Q Consensus 237 ~~~e~a~~a~-~~Gad~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~i~via~GGI~~~------------- 295 (371)
.+|++|+... +.|+|.+-++. ||-+.....| -.++.|.+|.+.++ ++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4788887655 67999999874 5543211012 35677899988873 5999998876554
Q ss_pred ---------HHHHHHHHcCCCEEEEchhHHHhhhc-------CC------hHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017434 296 ---------TDVFKALALGASGVFVGRPVPFSLAV-------DG------EAGVRKVLQMLRDEFELTMALSGCRS 349 (371)
Q Consensus 296 ---------~dv~kal~lGAd~V~iGr~~l~~~~~-------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 349 (371)
+++.+++.+|..-|-+++-+..+... .. ..-.....+.+++..+..|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543210 11 12234445667888888888888653
No 483
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=12 Score=36.99 Aligned_cols=162 Identities=21% Similarity=0.242 Sum_probs=89.2
Q ss_pred cCcceeecccccccccCChHhHHHHHHHHHcCCcEEecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcC
Q 017434 73 ISMPIMIAPTAFQKMAHPEGECATARAASAAGTIMTLSSWATSSVEEVSSTGPGIRFFQLYVTKHRNVDAQLVKRAERAG 152 (371)
Q Consensus 73 ~~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~aG 152 (371)
+..|.+++|- +++.-.+.|-+.|+..+.-....... .. +- .....+.+++.++.|+++|
T Consensus 4 ~~~~ell~pa---------g~l~~l~~ai~~GADaVY~G~~~~~~-----R~---~a----~nfs~~~l~e~i~~ah~~g 62 (347)
T COG0826 4 MGKPELLAPA---------GNLEDLKAAIAAGADAVYIGEKEFGL-----RR---RA----LNFSVEDLAEAVELAHSAG 62 (347)
T ss_pred CCcceeecCC---------CCHHHHHHHHHcCCCEEEeCCccccc-----cc---cc----ccCCHHHHHHHHHHHHHcC
Confidence 4567777774 35678888888887666432211110 00 01 0234555788888888888
Q ss_pred CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcccCC--CHHHHHHHHhhc-CC
Q 017434 153 FKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQIDRSL--NWKDVKWLQTIT-SL 229 (371)
Q Consensus 153 ~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ir~~~-~~ 229 (371)
.+.. +++++.........+...+. .......|.-. +.-.|..+++.. ++
T Consensus 63 kk~~-V~~N~~~~~~~~~~~~~~l~---------------------------~l~e~GvDaviv~Dpg~i~l~~e~~p~l 114 (347)
T COG0826 63 KKVY-VAVNTLLHNDELETLERYLD---------------------------RLVELGVDAVIVADPGLIMLARERGPDL 114 (347)
T ss_pred CeEE-EEeccccccchhhHHHHHHH---------------------------HHHHcCCCEEEEcCHHHHHHHHHhCCCC
Confidence 8654 34554332211111100000 00000001111 234466676666 68
Q ss_pred CEEEEE---ccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhc-CCCcEEEecCC
Q 017434 230 PILVKG---VLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAK-GRVPVFLDGGV 292 (371)
Q Consensus 230 pv~vK~---v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~-~~i~via~GGI 292 (371)
|+.+-. +.+.+.++...+.|+..+++.- .-+.+.|.++++..+ -++.|++-|+.
T Consensus 115 ~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~r---------Els~~ei~~i~~~~~~veiEvfVhGal 172 (347)
T COG0826 115 PIHVSTQANVTNAETAKFWKELGAKRVVLPR---------ELSLEEIKEIKEQTPDVEIEVFVHGAL 172 (347)
T ss_pred cEEEeeeEecCCHHHHHHHHHcCCEEEEeCc---------cCCHHHHHHHHHhCCCceEEEEEecch
Confidence 888764 3678889999999987777632 234566777777664 35667777763
No 484
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=90.05 E-value=4.1 Score=39.86 Aligned_cols=96 Identities=16% Similarity=0.109 Sum_probs=60.9
Q ss_pred CHHHHHHHHhhcC-CCEEEEEc------cCHHHHHHHH-HhCCCEEEEeCCCCc--CCCCccchH----HHHHHHHHHhc
Q 017434 216 NWKDVKWLQTITS-LPILVKGV------LTAEDASLAI-QYGAAGIIVSNHGAR--QLDYVPATV----MALEEVVQAAK 281 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v------~~~e~a~~a~-~~Gad~I~vs~~gg~--~~~~~~~~~----~~l~~i~~~~~ 281 (371)
.++.++.+|+..+ .|+++-.- .+++++..+. ..++|++.++-.... ....+...+ +.|..+++.+
T Consensus 99 ~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~- 177 (326)
T cd02811 99 LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL- 177 (326)
T ss_pred hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-
Confidence 3466778888775 88765432 1566665554 478999998532110 111222233 4566677666
Q ss_pred CCCcEEEe--cCCCCHHHHHHHHHcCCCEEEEch
Q 017434 282 GRVPVFLD--GGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 282 ~~i~via~--GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
++||++= |--.+.+++.+....|+|++.++.
T Consensus 178 -~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 178 -SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred -CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 7899883 433677888878889999999864
No 485
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=89.97 E-value=4.9 Score=38.05 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=61.9
Q ss_pred HHHHHHHHhhcCCCEEEEEc-c-CHHHH----HHHHHhCCCEEEEeCCCCcCCCC---ccchHHHHHHHHHHhcCCCcEE
Q 017434 217 WKDVKWLQTITSLPILVKGV-L-TAEDA----SLAIQYGAAGIIVSNHGARQLDY---VPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 217 ~~~i~~ir~~~~~pv~vK~v-~-~~e~a----~~a~~~Gad~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~i~vi 287 (371)
...++.+. .++.||++|.. . ++++. +.+.+.|.+-|.+--+|-+..+. -...+..+..+++.. .+||+
T Consensus 122 ~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV~ 198 (260)
T TIGR01361 122 FELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPII 198 (260)
T ss_pred HHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCEE
Confidence 45566664 46899999965 3 67664 44557788767664333322211 134667788887765 68999
Q ss_pred Eec----CCCC--HHHHHHHHHcCCCEEEEchhHH
Q 017434 288 LDG----GVRR--GTDVFKALALGASGVFVGRPVP 316 (371)
Q Consensus 288 a~G----GI~~--~~dv~kal~lGAd~V~iGr~~l 316 (371)
.|. |.+. ..-...|+++||++++|=+.+-
T Consensus 199 ~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 199 VDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred EcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 943 3222 2344478889999999988653
No 486
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.85 E-value=4.1 Score=39.46 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhhcCCCEEEEEc-cCHHHHHHHHHh-CCCEEEEe
Q 017434 215 LNWKDVKWLQTITSLPILVKGV-LTAEDASLAIQY-GAAGIIVS 256 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~v-~~~e~a~~a~~~-Gad~I~vs 256 (371)
..++.++.+++.+++||+.-+. .++++++.+++. |+|.|.+.
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 4567789999999999998764 569999999998 79999873
No 487
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.85 E-value=1.6 Score=41.61 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCCccchHH----HHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVM----ALEEVVQAAKGRVPVFLDG--GVRRGTD 297 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~i~via~G--GI~~~~d 297 (371)
+.|+++-++.++-.|+.+.++|.++|.+|++|-. --|.+..+++ .+.+|.+++ ++||++|. |..++..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 5688888889999999999999999999876422 1244444443 345555555 89999886 5555444
Q ss_pred H----HHHHHcCCCEEEEch
Q 017434 298 V----FKALALGASGVFVGR 313 (371)
Q Consensus 298 v----~kal~lGAd~V~iGr 313 (371)
+ .++...|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 4 455668999887754
No 488
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=89.73 E-value=11 Score=33.81 Aligned_cols=42 Identities=24% Similarity=0.461 Sum_probs=36.7
Q ss_pred CHHHHHHHHhhcC-CCEEEEEccCHHHHHHHHHhCCCEEEEeC
Q 017434 216 NWKDVKWLQTITS-LPILVKGVLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 216 ~~~~i~~ir~~~~-~pv~vK~v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
.++.++++++..+ .||++=|..+.+++..+.++|+|++.++.
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEeH
Confidence 4788999988886 99998887799999999999999999853
No 489
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=89.68 E-value=5.6 Score=37.45 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=73.0
Q ss_pred HHHHHHhhc---CCCEEEEEcc------CH------------HHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHH
Q 017434 219 DVKWLQTIT---SLPILVKGVL------TA------------EDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVV 277 (371)
Q Consensus 219 ~i~~ir~~~---~~pv~vK~v~------~~------------e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~ 277 (371)
.|+++-+.+ ++|+++-.+. +. +-++...+.|+|.+.|---+ +.-...-+++....
T Consensus 148 ~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv----yveGe~~ea~~~f~ 223 (306)
T COG3684 148 YIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV----YVEGEQEEAAAAFQ 223 (306)
T ss_pred HHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce----eccCccHHHHHHHH
Confidence 355554444 7999887641 11 11355667899999884321 11112334444333
Q ss_pred HHhc-CCCc-EEEecCCCC---HHHHHHHHHcCCCEEEEchhHHHhhhcCChHHHHHHHHHHHHHHHHHHHHhCCCCHhh
Q 017434 278 QAAK-GRVP-VFLDGGVRR---GTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKE 352 (371)
Q Consensus 278 ~~~~-~~i~-via~GGI~~---~~dv~kal~lGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~l~~ 352 (371)
+.-. .++| |+.+.||.. ...+.-|...||++|..||+.-.+....|. ...+.++.-.|+.++++
T Consensus 224 ~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~v~~g~-----------d~~re~Lrt~g~~ni~e 292 (306)
T COG3684 224 RQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAGVVEQGE-----------DAAREWLRTVGFPNLDE 292 (306)
T ss_pred HhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhcccccCc-----------HHHHHHHHhhccccHHH
Confidence 3211 1677 788889974 345556777999999999986443332343 33455667778888888
Q ss_pred hccc
Q 017434 353 ITRN 356 (371)
Q Consensus 353 l~~~ 356 (371)
|++-
T Consensus 293 L~~v 296 (306)
T COG3684 293 LNKV 296 (306)
T ss_pred HHHH
Confidence 7653
No 490
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=89.61 E-value=2.5 Score=39.02 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHH
Q 017434 218 KDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTD 297 (371)
Q Consensus 218 ~~i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~d 297 (371)
+.+..+++..+.|+++- +....+.+.|+|+|.++... ..+.++++.+. .-.+|+.+..++..+
T Consensus 61 ~~l~~l~~~~gv~liIN-----d~~dlA~~~~adGVHLg~~d-----------~~~~~~r~~~~-~~~iiG~s~~~s~~~ 123 (221)
T PRK06512 61 EKLVPVIQEAGAAALIA-----GDSRIAGRVKADGLHIEGNL-----------AALAEAIEKHA-PKMIVGFGNLRDRHG 123 (221)
T ss_pred HHHHHHHHHhCCEEEEe-----CHHHHHHHhCCCEEEECccc-----------cCHHHHHHhcC-CCCEEEecCCCCHHH
Confidence 44666777778888864 24677888999999884320 11345554442 223565555678888
Q ss_pred HHHHHHcCCCEEEEchh
Q 017434 298 VFKALALGASGVFVGRP 314 (371)
Q Consensus 298 v~kal~lGAd~V~iGr~ 314 (371)
+.++...|||.|.+|--
T Consensus 124 a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 124 AMEIGELRPDYLFFGKL 140 (221)
T ss_pred HHHhhhcCCCEEEECCC
Confidence 99998999999999964
No 491
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=89.54 E-value=0.79 Score=42.64 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhcCC-CEEEEE-ccCHHHHHHHHHhCCCEEEEeC
Q 017434 216 NWKDVKWLQTITSL-PILVKG-VLTAEDASLAIQYGAAGIIVSN 257 (371)
Q Consensus 216 ~~~~i~~ir~~~~~-pv~vK~-v~~~e~a~~a~~~Gad~I~vs~ 257 (371)
..+.++.+++.++. |+++.+ +.+.++++.++++|||+|+|++
T Consensus 171 ~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 171 PPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 57889999999988 999986 6889999999999999999965
No 492
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.49 E-value=2.4 Score=40.03 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHhhcCCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCCccchHHH-H---HHHHHHhcCCCc-EEEec
Q 017434 220 VKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATVMA-L---EEVVQAAKGRVP-VFLDG 290 (371)
Q Consensus 220 i~~ir~~~~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~i~-via~G 290 (371)
++.+++. +-|+++-++.+.-.|+.+.++|+|.|.++...+. .-|.+.-+++. + ..+++.. +.| |++|-
T Consensus 4 lr~l~~~-~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~ 80 (254)
T cd06557 4 LQKMKKA-GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADM 80 (254)
T ss_pred HHHHHhC-CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeC
Confidence 3444432 5688888888888999999999999986422111 12344444443 2 3333333 578 88876
Q ss_pred C---CCC-HHH----HHHHHH-cCCCEEEE
Q 017434 291 G---VRR-GTD----VFKALA-LGASGVFV 311 (371)
Q Consensus 291 G---I~~-~~d----v~kal~-lGAd~V~i 311 (371)
+ ..+ .++ +.+.+. .||++|.|
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 5 434 333 567777 99999999
No 493
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.48 E-value=4.4 Score=39.89 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhhcCCCEEEEE-ccCHHHHHHHHHhC-CCEEEE
Q 017434 215 LNWKDVKWLQTITSLPILVKG-VLTAEDASLAIQYG-AAGIIV 255 (371)
Q Consensus 215 ~~~~~i~~ir~~~~~pv~vK~-v~~~e~a~~a~~~G-ad~I~v 255 (371)
+.|+.++.+++.+++||++-+ +.++++++.+++.| +|.|.+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 457888999999999999877 46899999999866 999977
No 494
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=89.33 E-value=21 Score=34.34 Aligned_cols=69 Identities=20% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHhCCCEEEEeCCCCcCCCCccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHHh
Q 017434 242 ASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPFS 318 (371)
Q Consensus 242 a~~a~~~Gad~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~~ 318 (371)
++...++|||.|.+ +++ ..+.+.+..+.+.+...+|++...|-.-.-.....-++| ...|..|...+++
T Consensus 172 a~aY~eAGAD~ifv--~~~------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~a 241 (290)
T TIGR02321 172 GQAYEEAGADAILI--HSR------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRA 241 (290)
T ss_pred HHHHHHcCCCEEEe--cCC------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHH
Confidence 46678999999988 221 245677778888775567886654322112233455678 7888888776654
No 495
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=89.33 E-value=2 Score=41.36 Aligned_cols=84 Identities=20% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCCEEEEEccCHHHHHHHHHhCCCEEEEeCCCCc----CCCCccchH----HHHHHHHHHhcCCCcEEEec--CCCCHHH
Q 017434 228 SLPILVKGVLTAEDASLAIQYGAAGIIVSNHGAR----QLDYVPATV----MALEEVVQAAKGRVPVFLDG--GVRRGTD 297 (371)
Q Consensus 228 ~~pv~vK~v~~~e~a~~a~~~Gad~I~vs~~gg~----~~~~~~~~~----~~l~~i~~~~~~~i~via~G--GI~~~~d 297 (371)
+.++++-++.+.-.|+.+.++|.++|.+|+++-. .-|.+.-++ +.+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4577777888888999999999999999875311 134443333 3455555555 79999986 5555445
Q ss_pred H----HHHHHcCCCEEEEch
Q 017434 298 V----FKALALGASGVFVGR 313 (371)
Q Consensus 298 v----~kal~lGAd~V~iGr 313 (371)
+ .++..+|+.++.|--
T Consensus 92 v~~tV~~~~~aGvagi~IED 111 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVMED 111 (290)
T ss_pred HHHHHHHHHHcCCeEEEEeC
Confidence 4 345558999998843
No 496
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=89.26 E-value=5.4 Score=39.90 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=60.9
Q ss_pred CCHHHHHHHHhhcC-CCEEEEEc---------cCHHH----HHHHHHhCCCEEEEeCCCC-------cCCCCccc----h
Q 017434 215 LNWKDVKWLQTITS-LPILVKGV---------LTAED----ASLAIQYGAAGIIVSNHGA-------RQLDYVPA----T 269 (371)
Q Consensus 215 ~~~~~i~~ir~~~~-~pv~vK~v---------~~~e~----a~~a~~~Gad~I~vs~~gg-------~~~~~~~~----~ 269 (371)
|..|.+..|++..+ --+.+-++ .+.|+ +....+-|.|.+-+++.-. ......+. .
T Consensus 226 f~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~ 305 (400)
T KOG0134|consen 226 FPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFF 305 (400)
T ss_pred hhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccch
Confidence 67899999999863 12222222 12233 5666788899665643100 00011111 1
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcC-CCEEEEchhHHH
Q 017434 270 VMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALG-ASGVFVGRPVPF 317 (371)
Q Consensus 270 ~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lG-Ad~V~iGr~~l~ 317 (371)
.+....++...+ ..-|-+.||.++.+...+++..| .|+|+.||+++.
T Consensus 306 ~~f~e~~r~~~k-gt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~a 353 (400)
T KOG0134|consen 306 VEFAETIRPVFK-GTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLA 353 (400)
T ss_pred hhhhhHHHHHhc-CcEEEecCCccCHHHHHHHHhcCCceeEEecchhcc
Confidence 223334444542 23455667899999999999999 569999999975
No 497
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=89.18 E-value=26 Score=35.18 Aligned_cols=192 Identities=15% Similarity=0.028 Sum_probs=96.9
Q ss_pred CcceeecccccccccCChHhHHHHHHHHHcCCcEE-e--cCCCC-----------CC---HHHH----hccCCCceEEEE
Q 017434 74 SMPIMIAPTAFQKMAHPEGECATARAASAAGTIMT-L--SSWAT-----------SS---VEEV----SSTGPGIRFFQL 132 (371)
Q Consensus 74 ~~Pi~iAPm~~~~~~~~~~e~~~a~aa~~~G~~~~-~--s~~~~-----------~~---~eei----~~~~~~~~~~QL 132 (371)
..|+|.|=|+..+ ++.=..+++.+.+.|+.+. + |.-.. .. +.+| .+....|.|+.|
T Consensus 113 ~~pvIaSi~~~~s---~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEYN---KDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCCC---HHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 3588877654332 3323478888889887554 2 21111 11 2233 223346899998
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCCCCCCCcchhhhHhhhhcc
Q 017434 133 YVTKHRNVDAQLVKRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLYIGKMDKTDDSGLASYVANQID 212 (371)
Q Consensus 133 y~~~d~~~~~~~~~~a~~aG~~al~vtvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (371)
-+ +...+.++++.++++|+++++++ ++-..+.. -|+.+.-..|. +. . .. .....+| ..+.
T Consensus 190 sP--n~t~i~~ia~aa~~~Gadgi~li-NT~~~~~~-ID~~t~~p~~~-~~-----~---~~-~~GGlSG--~alk---- 249 (385)
T PLN02495 190 TP--NITDITQPARVALKSGCEGVAAI-NTIMSVMG-INLDTLRPEPC-VE-----G---YS-TPGGYSS--KAVR---- 249 (385)
T ss_pred CC--ChhhHHHHHHHHHHhCCCEEEEe-cccCcccc-cccccCccccc-cC-----C---CC-CCCCccc--hhhh----
Confidence 65 44457889999999999999874 33211000 01110000000 00 0 00 0000000 0110
Q ss_pred cCCCHHHHHHHHhhc------CCCEEE-EEccCHHHHHHHHHhCCCEEEEeCCCCcCCCCccchH-HHHHHHHHHhcCCC
Q 017434 213 RSLNWKDVKWLQTIT------SLPILV-KGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATV-MALEEVVQAAKGRV 284 (371)
Q Consensus 213 ~~~~~~~i~~ir~~~------~~pv~v-K~v~~~e~a~~a~~~Gad~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~i 284 (371)
+.....+.++++.+ ++||+- .|+.+.+||...+.+||+.|.|... .+..|+..+ +.+.++.+++..
T Consensus 250 -piAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta---~~~~Gp~vi~~i~~~L~~~m~~-- 323 (385)
T PLN02495 250 -PIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTG---VMMHGYPLVKNLCAELQDFMKK-- 323 (385)
T ss_pred -HHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeee---eeecCcHHHHHHHHHHHHHHHH--
Confidence 11223344444443 377653 3578999999999999999998542 122334322 234445444421
Q ss_pred cEEEecCCCCHHHHH
Q 017434 285 PVFLDGGVRRGTDVF 299 (371)
Q Consensus 285 ~via~GGI~~~~dv~ 299 (371)
=|+.+-+|+.
T Consensus 324 -----~G~~si~e~~ 333 (385)
T PLN02495 324 -----HNFSSIEDFR 333 (385)
T ss_pred -----cCCCCHHHHh
Confidence 2566666655
No 498
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.16 E-value=4.7 Score=40.16 Aligned_cols=42 Identities=31% Similarity=0.519 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEch
Q 017434 269 TVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGR 313 (371)
Q Consensus 269 ~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iGr 313 (371)
+|+.|.++++.. ++||++= ||.+.+|+.++.++|+|+|.++.
T Consensus 216 ~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 216 SPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 577888888876 6899976 69999999999999999998875
No 499
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.15 E-value=17 Score=33.09 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=55.8
Q ss_pred CHHHHHHHHhhcCCCEEEEEc--cCHHHHHHHH--HhCCCEEEEeCC----CCcCCCCccchHHHHHHHHHHhcCCCcEE
Q 017434 216 NWKDVKWLQTITSLPILVKGV--LTAEDASLAI--QYGAAGIIVSNH----GARQLDYVPATVMALEEVVQAAKGRVPVF 287 (371)
Q Consensus 216 ~~~~i~~ir~~~~~pv~vK~v--~~~e~a~~a~--~~Gad~I~vs~~----gg~~~~~~~~~~~~l~~i~~~~~~~i~vi 287 (371)
+.+.++.+++..+++++ |-+ ...++...+. ...+|++.+... ||+ +-.-.|..+. ..+ ..|++
T Consensus 88 ~~~~~~~l~~~~~~~ii-k~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt---G~~~dw~~l~---~~~--~~p~~ 158 (210)
T PRK01222 88 TPEFCRQLKRRYGLPVI-KALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT---GKTFDWSLLP---AGL--AKPWI 158 (210)
T ss_pred CHHHHHHHHhhcCCcEE-EEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC---CCccchHHhh---hcc--CCCEE
Confidence 34567788877777765 433 2333333332 236899888753 222 1122445441 122 46999
Q ss_pred EecCCCCHHHHHHHHH-cCCCEEEEchhH
Q 017434 288 LDGGVRRGTDVFKALA-LGASGVFVGRPV 315 (371)
Q Consensus 288 a~GGI~~~~dv~kal~-lGAd~V~iGr~~ 315 (371)
..|||. ++++.+++. .+..+|=+.+.+
T Consensus 159 LAGGi~-peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 159 LAGGLN-PDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred EECCCC-HHHHHHHHHhcCCCEEEecCce
Confidence 999996 899999998 488888887644
No 500
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.11 E-value=4.1 Score=40.32 Aligned_cols=82 Identities=22% Similarity=0.317 Sum_probs=57.2
Q ss_pred CCCEEEEEcc------CHHHHHHHHHhCCCEEEEeC----CCCcC--------CC--------------C----------
Q 017434 228 SLPILVKGVL------TAEDASLAIQYGAAGIIVSN----HGARQ--------LD--------------Y---------- 265 (371)
Q Consensus 228 ~~pv~vK~v~------~~e~a~~a~~~Gad~I~vs~----~gg~~--------~~--------------~---------- 265 (371)
+-|.+++.-. +.+..+++.++|+..|+++- .|.|. .. .
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA 203 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence 4567777632 33457888899999988853 11110 00 0
Q ss_pred --ccchHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHcCCCEEEEc
Q 017434 266 --VPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVG 312 (371)
Q Consensus 266 --~~~~~~~l~~i~~~~~~~i~via~GGI~~~~dv~kal~lGAd~V~iG 312 (371)
...+|+.+..+++.. ++||++= ||.+++|+.++..+|+|+|.+.
T Consensus 204 ~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 204 AKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred ccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEEe
Confidence 112567788888776 6899987 5899999999999999999983
Done!