Query 017435
Match_columns 371
No_of_seqs 233 out of 1622
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:33:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1282 Serine carboxypeptidas 100.0 1.8E-89 4E-94 687.5 29.6 306 47-371 24-337 (454)
2 PLN02209 serine carboxypeptida 100.0 7.5E-75 1.6E-79 585.5 29.8 295 49-371 21-328 (437)
3 PLN03016 sinapoylglucose-malat 100.0 7.6E-75 1.7E-79 585.2 29.4 293 49-371 19-324 (433)
4 PF00450 Peptidase_S10: Serine 100.0 2.9E-74 6.2E-79 576.6 22.4 293 57-371 1-303 (415)
5 PTZ00472 serine carboxypeptida 100.0 7.2E-68 1.6E-72 539.6 27.4 272 62-371 43-338 (462)
6 COG2939 Carboxypeptidase C (ca 100.0 8.6E-52 1.9E-56 412.3 16.7 270 64-371 74-371 (498)
7 PLN02213 sinapoylglucose-malat 100.0 1.6E-46 3.6E-51 366.6 19.7 203 140-371 1-210 (319)
8 KOG1283 Serine carboxypeptidas 100.0 3.3E-43 7.2E-48 331.0 10.1 231 66-305 3-242 (414)
9 TIGR03611 RutD pyrimidine util 98.5 3.8E-07 8.2E-12 83.4 7.9 116 82-238 2-117 (257)
10 TIGR01250 pro_imino_pep_2 prol 98.5 5.3E-07 1.2E-11 83.5 8.5 130 67-237 3-132 (288)
11 PRK00870 haloalkane dehalogena 98.5 1.9E-06 4.2E-11 82.8 12.4 140 51-236 9-150 (302)
12 TIGR03056 bchO_mg_che_rel puta 98.4 1.3E-06 2.9E-11 81.5 10.7 123 70-238 10-132 (278)
13 PHA02857 monoglyceride lipase; 98.4 2E-06 4.4E-11 81.2 10.0 125 78-239 10-135 (276)
14 TIGR01249 pro_imino_pep_1 prol 98.4 2.5E-06 5.4E-11 82.5 10.4 125 68-237 6-131 (306)
15 PLN02824 hydrolase, alpha/beta 98.3 2.9E-06 6.4E-11 81.0 10.3 124 69-236 11-137 (294)
16 PRK10673 acyl-CoA esterase; Pr 98.2 7.4E-06 1.6E-10 75.9 8.7 104 90-234 11-114 (255)
17 PLN02298 hydrolase, alpha/beta 98.2 9.8E-06 2.1E-10 79.0 9.9 140 65-238 31-171 (330)
18 PF10340 DUF2424: Protein of u 98.1 9E-06 2E-10 80.8 8.4 133 80-240 105-239 (374)
19 TIGR02240 PHA_depoly_arom poly 98.1 2E-05 4.2E-10 74.7 10.4 117 78-237 11-127 (276)
20 PRK03592 haloalkane dehalogena 98.1 1.9E-05 4E-10 75.5 10.4 120 70-238 11-130 (295)
21 PLN02385 hydrolase; alpha/beta 98.0 2.7E-05 5.9E-10 76.7 10.4 128 77-237 70-198 (349)
22 PF12697 Abhydrolase_6: Alpha/ 98.0 1.2E-05 2.5E-10 71.2 6.9 104 98-239 1-104 (228)
23 PRK03204 haloalkane dehalogena 98.0 4E-05 8.7E-10 73.5 11.1 123 66-236 14-136 (286)
24 PRK06489 hypothetical protein; 98.0 6E-05 1.3E-09 74.7 11.9 142 64-235 39-188 (360)
25 PLN03084 alpha/beta hydrolase 98.0 5.6E-05 1.2E-09 76.0 11.3 133 63-237 101-233 (383)
26 TIGR03695 menH_SHCHC 2-succiny 97.9 4.7E-05 1E-09 68.4 8.3 105 95-236 1-105 (251)
27 PRK11126 2-succinyl-6-hydroxy- 97.9 4E-05 8.6E-10 70.5 7.9 100 95-235 2-101 (242)
28 PLN02652 hydrolase; alpha/beta 97.8 0.00013 2.8E-09 73.7 10.7 129 77-238 119-247 (395)
29 PRK10749 lysophospholipase L2; 97.8 0.00012 2.6E-09 71.6 10.1 126 78-237 40-167 (330)
30 TIGR03343 biphenyl_bphD 2-hydr 97.8 6.4E-05 1.4E-09 70.7 7.7 107 94-235 29-135 (282)
31 PLN02679 hydrolase, alpha/beta 97.8 0.0002 4.4E-09 71.1 11.5 130 66-236 61-191 (360)
32 PLN02894 hydrolase, alpha/beta 97.7 0.00022 4.9E-09 72.1 11.2 119 80-236 93-211 (402)
33 TIGR02427 protocat_pcaD 3-oxoa 97.7 9.7E-05 2.1E-09 66.6 7.8 103 92-234 10-112 (251)
34 PLN02578 hydrolase 97.7 0.00032 6.9E-09 69.4 12.0 112 78-235 75-186 (354)
35 PLN03087 BODYGUARD 1 domain co 97.7 0.00027 5.8E-09 73.2 11.0 134 64-235 174-308 (481)
36 PRK10349 carboxylesterase BioH 97.7 0.00014 3E-09 67.9 7.6 95 96-235 14-108 (256)
37 PLN02211 methyl indole-3-aceta 97.6 0.00029 6.4E-09 67.2 9.4 107 93-236 16-122 (273)
38 COG1506 DAP2 Dipeptidyl aminop 97.6 0.00026 5.5E-09 75.6 9.5 135 77-240 374-511 (620)
39 PLN02965 Probable pheophorbida 97.6 0.00024 5.1E-09 66.5 8.1 100 98-235 6-106 (255)
40 PRK14875 acetoin dehydrogenase 97.6 0.00042 9.2E-09 68.0 10.1 114 78-235 118-231 (371)
41 PRK08775 homoserine O-acetyltr 97.5 0.00045 9.8E-09 67.9 9.8 76 139-237 98-174 (343)
42 TIGR01840 esterase_phb esteras 97.5 0.00031 6.7E-09 64.3 8.0 117 92-236 10-130 (212)
43 PRK05077 frsA fermentation/res 97.5 0.00041 8.8E-09 70.5 9.7 123 78-238 178-302 (414)
44 TIGR01738 bioH putative pimelo 97.5 0.00023 4.9E-09 64.0 6.9 97 95-236 4-100 (245)
45 TIGR03101 hydr2_PEP hydrolase, 97.4 0.0006 1.3E-08 65.3 8.9 125 78-240 9-138 (266)
46 PLN02511 hydrolase 97.3 0.00094 2E-08 67.2 9.5 137 67-237 72-211 (388)
47 KOG4409 Predicted hydrolase/ac 97.3 0.0012 2.7E-08 64.7 9.7 137 63-239 62-198 (365)
48 TIGR02821 fghA_ester_D S-formy 97.2 0.0056 1.2E-07 58.4 12.9 42 189-239 135-176 (275)
49 PRK05855 short chain dehydroge 97.1 0.0021 4.6E-08 66.8 9.9 100 78-209 12-111 (582)
50 PLN02980 2-oxoglutarate decarb 97.1 0.0028 6.1E-08 74.7 11.6 119 81-235 1356-1479(1655)
51 COG0596 MhpC Predicted hydrola 97.1 0.0039 8.5E-08 55.1 9.9 104 95-237 21-124 (282)
52 COG2267 PldB Lysophospholipase 97.0 0.0038 8.3E-08 60.7 9.7 137 66-239 9-145 (298)
53 PF00561 Abhydrolase_1: alpha/ 97.0 0.00094 2E-08 59.9 4.9 77 142-235 2-78 (230)
54 cd00707 Pancreat_lipase_like P 97.0 0.001 2.2E-08 63.9 5.3 113 92-235 33-146 (275)
55 KOG2564 Predicted acetyltransf 97.0 0.003 6.5E-08 60.4 8.2 110 93-235 72-181 (343)
56 PRK00175 metX homoserine O-ace 96.9 0.0064 1.4E-07 60.9 10.7 137 78-236 32-182 (379)
57 PRK07581 hypothetical protein; 96.9 0.0052 1.1E-07 60.1 9.8 130 78-236 25-159 (339)
58 TIGR01607 PST-A Plasmodium sub 96.9 0.0073 1.6E-07 59.4 10.7 156 77-238 6-187 (332)
59 PLN02442 S-formylglutathione h 96.9 0.0079 1.7E-07 57.8 10.4 57 171-239 125-181 (283)
60 KOG1455 Lysophospholipase [Lip 96.8 0.011 2.4E-07 57.2 10.3 138 67-237 28-165 (313)
61 PRK10566 esterase; Provisional 96.8 0.0052 1.1E-07 56.9 8.0 107 82-211 14-126 (249)
62 PRK10985 putative hydrolase; P 96.7 0.0091 2E-07 58.3 9.8 135 69-238 34-170 (324)
63 KOG4178 Soluble epoxide hydrol 96.7 0.016 3.5E-07 56.6 11.2 137 64-240 20-157 (322)
64 TIGR03230 lipo_lipase lipoprot 96.7 0.0066 1.4E-07 62.1 8.4 81 140-235 73-153 (442)
65 KOG1515 Arylacetamide deacetyl 96.6 0.026 5.6E-07 55.9 12.0 146 67-240 62-211 (336)
66 TIGR00976 /NonD putative hydro 96.4 0.0082 1.8E-07 63.2 7.5 129 78-239 6-135 (550)
67 KOG1454 Predicted hydrolase/ac 96.4 0.015 3.2E-07 57.4 8.6 96 93-216 56-152 (326)
68 PRK10115 protease 2; Provision 96.4 0.019 4.1E-07 62.2 10.1 138 76-241 424-564 (686)
69 KOG2100 Dipeptidyl aminopeptid 96.3 0.018 4E-07 62.9 9.7 145 67-239 499-647 (755)
70 PLN00021 chlorophyllase 96.3 0.021 4.5E-07 56.0 9.2 116 92-238 49-168 (313)
71 COG3509 LpqC Poly(3-hydroxybut 96.3 0.03 6.4E-07 54.1 9.8 125 78-236 44-179 (312)
72 PF00975 Thioesterase: Thioest 95.9 0.037 7.9E-07 50.5 8.5 102 96-235 1-103 (229)
73 TIGR03100 hydr1_PEP hydrolase, 95.7 0.056 1.2E-06 51.5 9.2 80 141-239 58-137 (274)
74 TIGR01392 homoserO_Ac_trn homo 95.7 0.087 1.9E-06 51.9 10.6 135 78-236 15-162 (351)
75 PRK10162 acetyl esterase; Prov 95.6 0.041 8.8E-07 53.8 7.8 65 171-239 134-198 (318)
76 PF00326 Peptidase_S9: Prolyl 95.5 0.011 2.4E-07 53.7 3.1 93 140-243 14-106 (213)
77 PF10230 DUF2305: Uncharacteri 95.3 0.12 2.5E-06 49.5 9.6 119 95-238 2-124 (266)
78 KOG1838 Alpha/beta hydrolase [ 95.2 0.25 5.4E-06 50.0 11.9 133 68-236 95-236 (409)
79 PF10503 Esterase_phd: Esteras 95.1 0.064 1.4E-06 50.0 6.8 44 184-236 89-132 (220)
80 PF12695 Abhydrolase_5: Alpha/ 94.8 0.047 1E-06 45.6 4.8 95 97-236 1-95 (145)
81 PF06500 DUF1100: Alpha/beta h 94.6 0.021 4.6E-07 57.7 2.5 81 141-239 219-299 (411)
82 PLN02872 triacylglycerol lipas 94.4 0.27 5.9E-06 49.8 10.1 124 63-206 41-174 (395)
83 COG0657 Aes Esterase/lipase [L 93.5 1.5 3.3E-05 42.2 13.1 53 191-248 151-203 (312)
84 COG4099 Predicted peptidase [G 93.4 1.4 3E-05 43.0 11.9 133 76-237 169-305 (387)
85 PRK11460 putative hydrolase; P 93.3 0.32 6.9E-06 45.3 7.6 52 175-236 87-138 (232)
86 KOG4391 Predicted alpha/beta h 93.2 0.61 1.3E-05 43.5 9.0 124 78-239 64-187 (300)
87 cd00312 Esterase_lipase Estera 92.6 0.43 9.4E-06 49.1 8.2 39 171-210 156-194 (493)
88 PRK11071 esterase YqiA; Provis 92.6 0.12 2.7E-06 46.6 3.7 93 96-238 2-95 (190)
89 PF05990 DUF900: Alpha/beta hy 92.4 0.2 4.4E-06 46.9 4.9 68 170-240 74-141 (233)
90 PF02230 Abhydrolase_2: Phosph 91.8 0.21 4.5E-06 45.7 4.2 74 171-255 86-165 (216)
91 PF07859 Abhydrolase_3: alpha/ 91.5 0.39 8.4E-06 43.1 5.7 63 170-238 47-112 (211)
92 PF01764 Lipase_3: Lipase (cla 90.5 0.63 1.4E-05 39.0 5.7 62 170-236 45-106 (140)
93 cd00741 Lipase Lipase. Lipase 90.4 0.79 1.7E-05 39.4 6.3 44 170-216 9-52 (153)
94 cd00519 Lipase_3 Lipase (class 90.0 0.76 1.6E-05 42.4 6.2 60 171-237 110-169 (229)
95 PRK10252 entF enterobactin syn 89.8 2 4.4E-05 49.4 10.7 103 95-235 1068-1170(1296)
96 PF02129 Peptidase_S15: X-Pro 88.0 0.72 1.6E-05 43.7 4.7 83 141-240 58-140 (272)
97 PLN02454 triacylglycerol lipas 87.9 1.4 3E-05 44.9 6.7 69 168-238 205-273 (414)
98 PRK13604 luxD acyl transferase 87.3 2.9 6.3E-05 40.9 8.4 123 78-237 19-142 (307)
99 COG0400 Predicted esterase [Ge 87.2 3.8 8.2E-05 37.8 8.7 80 167-256 75-157 (207)
100 PRK05371 x-prolyl-dipeptidyl a 86.3 1.6 3.5E-05 48.0 6.7 84 139-238 278-375 (767)
101 PF11144 DUF2920: Protein of u 85.9 1.4 3E-05 44.7 5.4 62 169-239 160-222 (403)
102 PLN02733 phosphatidylcholine-s 85.6 1.4 2.9E-05 45.5 5.3 40 169-211 142-181 (440)
103 PF07819 PGAP1: PGAP1-like pro 84.8 6.8 0.00015 36.4 9.3 65 169-239 60-127 (225)
104 PF06057 VirJ: Bacterial virul 84.4 2 4.2E-05 39.2 5.2 110 95-240 2-111 (192)
105 PF05577 Peptidase_S28: Serine 84.1 1.6 3.5E-05 44.4 5.2 73 166-247 87-159 (434)
106 PF05728 UPF0227: Uncharacteri 84.1 1.2 2.5E-05 40.5 3.6 40 191-242 58-97 (187)
107 COG3319 Thioesterase domains o 83.9 8.3 0.00018 36.8 9.5 104 96-237 1-104 (257)
108 PF11288 DUF3089: Protein of u 83.2 1.5 3.3E-05 40.5 4.1 44 170-215 75-118 (207)
109 smart00824 PKS_TE Thioesterase 82.7 6.4 0.00014 34.3 7.9 76 140-234 25-100 (212)
110 KOG3975 Uncharacterized conser 82.3 1.7 3.8E-05 41.3 4.1 43 166-217 89-131 (301)
111 PF05677 DUF818: Chlamydia CHL 82.3 1.8 4E-05 42.9 4.4 92 91-208 133-231 (365)
112 PLN02571 triacylglycerol lipas 81.6 4.2 9.1E-05 41.5 6.9 69 169-238 204-277 (413)
113 KOG4627 Kynurenine formamidase 81.4 0.8 1.7E-05 42.4 1.5 75 150-239 101-175 (270)
114 KOG2183 Prolylcarboxypeptidase 81.2 4 8.7E-05 41.5 6.4 66 140-209 111-184 (492)
115 TIGR03502 lipase_Pla1_cef extr 79.9 6 0.00013 43.7 7.8 45 167-211 521-574 (792)
116 TIGR01836 PHA_synth_III_C poly 79.9 3.7 8E-05 40.4 5.8 55 173-239 120-174 (350)
117 PRK06765 homoserine O-acetyltr 79.6 2.7 5.9E-05 42.5 4.8 54 166-235 141-195 (389)
118 PRK10439 enterobactin/ferric e 79.5 15 0.00032 37.5 10.1 36 192-236 288-323 (411)
119 PF06342 DUF1057: Alpha/beta h 78.3 37 0.00079 33.1 11.7 104 93-235 33-136 (297)
120 PF00151 Lipase: Lipase; Inte 77.5 0.66 1.4E-05 45.9 -0.3 71 139-215 103-173 (331)
121 PF07519 Tannase: Tannase and 75.1 6.3 0.00014 41.0 6.1 88 169-269 96-192 (474)
122 KOG1552 Predicted alpha/beta h 74.4 12 0.00025 35.8 7.1 111 91-240 56-167 (258)
123 PF03283 PAE: Pectinacetyleste 73.8 20 0.00044 35.9 9.2 150 78-237 34-198 (361)
124 PF08237 PE-PPE: PE-PPE domain 73.7 12 0.00025 35.0 7.0 86 142-235 4-89 (225)
125 KOG3724 Negative regulator of 73.1 55 0.0012 36.2 12.4 94 96-206 90-196 (973)
126 PLN02753 triacylglycerol lipas 72.9 10 0.00022 39.9 6.8 72 167-238 285-361 (531)
127 PLN02719 triacylglycerol lipas 72.0 10 0.00023 39.6 6.7 71 168-238 272-347 (518)
128 KOG2182 Hydrolytic enzymes of 70.6 39 0.00085 35.2 10.3 49 166-214 146-194 (514)
129 PF10081 Abhydrolase_9: Alpha/ 70.6 8.6 0.00019 37.2 5.3 37 168-204 85-121 (289)
130 PF05448 AXE1: Acetyl xylan es 70.2 17 0.00038 35.7 7.6 143 78-238 66-211 (320)
131 COG0627 Predicted esterase [Ge 69.1 11 0.00023 37.2 5.8 130 94-239 52-190 (316)
132 PF11187 DUF2974: Protein of u 68.7 11 0.00023 35.2 5.5 53 173-234 69-121 (224)
133 PLN02934 triacylglycerol lipas 67.8 14 0.00029 38.7 6.5 41 173-216 305-345 (515)
134 PLN02324 triacylglycerol lipas 67.5 16 0.00035 37.3 6.8 70 168-238 192-267 (415)
135 PLN00413 triacylglycerol lipas 65.9 8 0.00017 40.1 4.4 39 174-215 269-307 (479)
136 PLN02310 triacylglycerol lipas 65.4 15 0.00032 37.4 6.1 64 170-237 186-250 (405)
137 PF06259 Abhydrolase_8: Alpha/ 64.8 13 0.00029 33.4 5.1 67 139-212 62-129 (177)
138 PLN02847 triacylglycerol lipas 64.1 13 0.00028 39.7 5.5 60 167-233 225-288 (633)
139 COG2945 Predicted hydrolase of 63.4 9 0.0002 35.1 3.7 59 149-215 68-126 (210)
140 PLN02761 lipase class 3 family 63.0 19 0.00041 37.8 6.5 70 169-238 268-344 (527)
141 PLN02408 phospholipase A1 63.0 12 0.00026 37.6 4.9 46 170-216 179-224 (365)
142 PRK04940 hypothetical protein; 62.1 12 0.00026 33.8 4.3 38 192-241 60-97 (180)
143 PLN03082 Iron-sulfur cluster a 61.7 11 0.00023 33.6 3.9 63 93-156 76-144 (163)
144 PF08538 DUF1749: Protein of u 61.4 16 0.00035 35.7 5.4 72 166-241 81-153 (303)
145 KOG3101 Esterase D [General fu 61.4 67 0.0014 30.2 9.0 41 191-240 140-180 (283)
146 PLN02802 triacylglycerol lipas 61.3 19 0.0004 37.7 6.0 64 170-237 309-372 (509)
147 PLN02162 triacylglycerol lipas 60.6 12 0.00025 38.8 4.4 40 173-215 262-301 (475)
148 COG2272 PnbA Carboxylesterase 60.6 45 0.00097 34.8 8.6 33 176-209 165-197 (491)
149 TIGR01838 PHA_synth_I poly(R)- 60.2 50 0.0011 34.9 9.2 85 141-239 221-305 (532)
150 PLN03037 lipase class 3 family 58.6 24 0.00052 37.0 6.3 64 171-237 296-360 (525)
151 PF12146 Hydrolase_4: Putative 58.5 39 0.00085 25.9 6.2 78 79-180 2-79 (79)
152 PRK14567 triosephosphate isome 58.2 24 0.00051 33.7 5.8 62 168-239 177-238 (253)
153 PF08840 BAAT_C: BAAT / Acyl-C 58.2 7.2 0.00016 35.8 2.3 44 181-234 11-54 (213)
154 PRK07868 acyl-CoA synthetase; 58.0 45 0.00097 37.9 8.9 40 191-238 140-179 (994)
155 PF05057 DUF676: Putative seri 57.8 15 0.00033 33.7 4.4 50 167-217 54-103 (217)
156 PRK14566 triosephosphate isome 55.7 24 0.00052 33.8 5.4 62 168-239 187-248 (260)
157 PF01083 Cutinase: Cutinase; 55.5 22 0.00049 31.7 4.9 82 142-239 41-126 (179)
158 KOG4569 Predicted lipase [Lipi 55.3 26 0.00056 34.7 5.8 58 174-236 156-213 (336)
159 COG4782 Uncharacterized protei 53.2 21 0.00045 35.8 4.6 118 93-240 114-238 (377)
160 TIGR01911 HesB_rel_seleno HesB 52.0 22 0.00047 28.4 3.8 57 97-154 28-89 (92)
161 KOG3079 Uridylate kinase/adeny 51.8 8.6 0.00019 35.0 1.6 16 93-108 5-20 (195)
162 PF00681 Plectin: Plectin repe 50.5 13 0.00028 25.5 2.0 33 233-265 11-43 (45)
163 COG2819 Predicted hydrolase of 49.5 1.3E+02 0.0029 28.9 9.3 36 172-207 113-152 (264)
164 PRK11190 Fe/S biogenesis prote 48.0 41 0.00088 30.7 5.4 63 97-160 25-95 (192)
165 PF00756 Esterase: Putative es 47.2 13 0.00028 34.1 2.2 56 171-239 98-153 (251)
166 PF06821 Ser_hydrolase: Serine 47.1 17 0.00037 32.3 2.8 39 191-237 54-92 (171)
167 PF12740 Chlorophyllase2: Chlo 47.0 32 0.00069 32.9 4.7 64 167-236 62-131 (259)
168 PF03583 LIP: Secretory lipase 46.9 54 0.0012 31.6 6.4 67 168-239 44-116 (290)
169 PLN02429 triosephosphate isome 44.7 46 0.00099 32.8 5.5 62 168-239 237-299 (315)
170 KOG1516 Carboxylesterase and r 43.0 1.4E+02 0.003 31.1 9.3 34 176-210 180-213 (545)
171 COG3208 GrsT Predicted thioest 42.8 28 0.00062 32.9 3.6 65 141-216 34-98 (244)
172 PLN02561 triosephosphate isome 42.6 54 0.0012 31.2 5.5 61 168-238 178-239 (253)
173 PF07849 DUF1641: Protein of u 41.7 9 0.00019 26.1 0.1 17 342-358 15-31 (42)
174 COG3545 Predicted esterase of 41.1 29 0.00063 31.3 3.2 36 191-235 58-93 (181)
175 PRK09504 sufA iron-sulfur clus 40.5 33 0.00072 28.7 3.4 64 95-159 39-108 (122)
176 KOG2382 Predicted alpha/beta h 40.5 1.2E+02 0.0027 29.8 7.7 90 88-203 45-134 (315)
177 KOG1553 Predicted alpha/beta h 40.1 50 0.0011 33.2 4.9 55 167-235 290-344 (517)
178 COG0429 Predicted hydrolase of 39.3 62 0.0013 32.2 5.5 127 70-235 53-185 (345)
179 KOG2281 Dipeptidyl aminopeptid 38.8 55 0.0012 35.4 5.3 125 79-240 623-766 (867)
180 TIGR02011 IscA iron-sulfur clu 38.7 35 0.00075 27.7 3.2 63 96-159 23-91 (105)
181 COG4757 Predicted alpha/beta h 37.3 70 0.0015 30.5 5.2 124 141-270 58-196 (281)
182 PF03403 PAF-AH_p_II: Platelet 35.8 24 0.00051 35.6 2.1 38 193-240 229-266 (379)
183 TIGR03341 YhgI_GntY IscR-regul 35.6 87 0.0019 28.5 5.5 63 97-160 24-94 (190)
184 KOG3967 Uncharacterized conser 35.3 1.2E+02 0.0025 28.6 6.2 42 167-214 171-212 (297)
185 PF05576 Peptidase_S37: PS-10 34.7 2.3E+02 0.0051 29.1 8.8 89 91-205 59-147 (448)
186 PF02450 LCAT: Lecithin:choles 34.5 41 0.00088 33.9 3.5 40 170-213 101-140 (389)
187 PTZ00333 triosephosphate isome 33.9 89 0.0019 29.8 5.5 61 168-238 181-242 (255)
188 PRK14565 triosephosphate isome 33.6 83 0.0018 29.7 5.2 55 167-239 171-225 (237)
189 PF03096 Ndr: Ndr family; Int 33.5 46 0.001 32.3 3.5 121 94-250 22-144 (283)
190 PRK09502 iscA iron-sulfur clus 33.3 34 0.00073 27.9 2.2 62 97-159 26-93 (107)
191 PRK15492 triosephosphate isome 30.7 1.1E+02 0.0024 29.3 5.6 61 168-239 187-248 (260)
192 PRK00042 tpiA triosephosphate 30.3 1.4E+02 0.003 28.4 6.1 61 168-239 178-239 (250)
193 cd00311 TIM Triosephosphate is 30.0 1.3E+02 0.0029 28.3 6.0 60 169-239 175-235 (242)
194 PF14020 DUF4236: Protein of u 29.3 71 0.0015 23.1 3.1 14 143-157 41-54 (55)
195 PF13150 DUF3989: Protein of u 28.4 58 0.0013 25.7 2.7 27 10-36 22-48 (85)
196 PF06028 DUF915: Alpha/beta hy 28.1 1.4E+02 0.003 28.4 5.8 37 167-206 81-117 (255)
197 KOG2931 Differentiation-relate 27.6 1.8E+02 0.0039 28.6 6.4 94 137-251 75-168 (326)
198 PRK06762 hypothetical protein; 27.3 37 0.0008 29.2 1.6 13 96-108 2-14 (166)
199 PF06309 Torsin: Torsin; Inte 25.8 56 0.0012 27.8 2.4 17 92-108 49-65 (127)
200 COG4425 Predicted membrane pro 25.8 92 0.002 32.3 4.2 37 168-204 373-409 (588)
201 PRK13623 iron-sulfur cluster i 25.3 74 0.0016 26.1 3.0 62 97-159 34-101 (115)
202 PF09292 Neil1-DNA_bind: Endon 24.3 45 0.00097 22.2 1.2 11 96-106 25-35 (39)
203 KOG2984 Predicted hydrolase [G 23.6 1.9E+02 0.0042 27.0 5.5 103 78-213 30-135 (277)
204 PLN02517 phosphatidylcholine-s 23.3 1.1E+02 0.0024 32.9 4.4 34 175-211 199-232 (642)
205 KOG2565 Predicted hydrolases o 23.0 5.4E+02 0.012 26.4 8.9 117 78-216 133-253 (469)
206 COG0412 Dienelactone hydrolase 23.0 1.5E+02 0.0033 27.5 5.0 44 169-213 90-133 (236)
207 PF04414 tRNA_deacylase: D-ami 23.0 2.1E+02 0.0046 26.5 5.8 105 97-216 31-152 (213)
208 PF04446 Thg1: tRNAHis guanyly 22.9 92 0.002 26.7 3.2 52 142-200 22-73 (135)
209 PF05277 DUF726: Protein of un 22.9 2.1E+02 0.0045 28.6 6.1 58 170-235 203-260 (345)
210 PF07389 DUF1500: Protein of u 22.6 68 0.0015 25.5 2.1 27 174-202 8-34 (100)
211 KOG2369 Lecithin:cholesterol a 22.5 76 0.0017 32.9 3.0 45 170-214 159-204 (473)
212 PF01738 DLH: Dienelactone hyd 22.2 69 0.0015 28.8 2.4 41 170-211 77-117 (218)
213 COG1075 LipA Predicted acetylt 22.0 1.2E+02 0.0026 29.9 4.3 45 167-214 105-149 (336)
214 COG0218 Predicted GTPase [Gene 22.0 1.3E+02 0.0027 27.8 4.0 59 94-158 23-84 (200)
215 COG3571 Predicted hydrolase of 21.8 1.1E+02 0.0023 27.7 3.4 28 188-215 85-112 (213)
216 PF15253 STIL_N: SCL-interrupt 21.4 1E+02 0.0022 31.5 3.7 37 64-103 198-235 (410)
217 PF01583 APS_kinase: Adenylyls 21.3 55 0.0012 28.8 1.5 14 95-108 1-14 (156)
218 PF00448 SRP54: SRP54-type pro 20.2 4.8E+02 0.01 23.5 7.5 65 140-231 83-147 (196)
219 PF15613 WHIM2: WSTF, HB1, Itc 20.1 1.4E+02 0.0031 19.9 2.9 27 80-106 12-38 (38)
No 1
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-89 Score=687.49 Aligned_cols=306 Identities=51% Similarity=0.952 Sum_probs=274.4
Q ss_pred hhhccccccCCCCCC-CCcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEcc
Q 017435 47 EEEADRIASLPGQPK-VSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINK 125 (371)
Q Consensus 47 ~~~~~~v~~lpg~~~-~~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~ 125 (371)
.+++|+|++|||++. ++|++|||||+|+++.+++||||||||+++|+++||||||||||||||+. |+|.|+|||+|+.
T Consensus 24 ~~~~~~I~~LPG~~~~~~f~~ysGYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~ 102 (454)
T KOG1282|consen 24 VDEADLIKSLPGQPGPLPFKQYSGYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKY 102 (454)
T ss_pred cchhhhhhcCCCCCCCCCcccccceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEcC
Confidence 347899999999996 89999999999999889999999999999999999999999999999997 9999999999999
Q ss_pred CCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccc
Q 017435 126 TASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHY 205 (371)
Q Consensus 126 ~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~y 205 (371)
||.+|..|||||||.||||||||||||||||+++..++. ++|+.+|+|++.||++||++||||++|||||+||||||||
T Consensus 103 ~G~tL~~N~ySWnk~aNiLfLd~PvGvGFSYs~~~~~~~-~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~Y 181 (454)
T KOG1282|consen 103 NGKTLYLNPYSWNKEANILFLDQPVGVGFSYSNTSSDYK-TGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHY 181 (454)
T ss_pred CCCcceeCCccccccccEEEEecCCcCCccccCCCCcCc-CCcHHHHHHHHHHHHHHHHhChhhcCCCeEEeccccccee
Confidence 999999999999999999999999999999999988875 6999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCc-eeeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHHhhcccCC------CCChHHH
Q 017435 206 VPQLAREIMIHNSKSKHP-INLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR------QKESDEC 278 (371)
Q Consensus 206 vP~la~~i~~~n~~~~~~-inLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~~C~~~~------~~~~~~C 278 (371)
||+||++|++.|+....+ |||||++||||++|+..|..++++|+|.||+|++++++.+++.|.... ...+.+|
T Consensus 182 VP~La~~I~~~N~~~~~~~iNLkG~~IGNg~td~~~~~~~~~~~a~~h~liSde~~~~l~~~C~~~~~~~~~~~~~~~~C 261 (454)
T KOG1282|consen 182 VPALAQEILKGNKKCCKPNINLKGYAIGNGLTDPEIDYNGRIPFAWGHGLISDELYESLKRACDFSSDNYANVDPSNTKC 261 (454)
T ss_pred hHHHHHHHHhccccccCCcccceEEEecCcccCccccccchhhhhhhcccCCHHHHHHHHHHhccCcccccccCCchhHH
Confidence 999999999999764334 999999999999999999999999999999999999999999998732 1346789
Q ss_pred HHHHHHHHhhhcCCCCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcchhHhhccCcHHHHhhhCC
Q 017435 279 ESLYTYAMDQEFGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTEKYAEIYYNRPDVQKALHA 358 (371)
Q Consensus 279 ~~~~~~~~~~~~~~in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~~~~~~YLN~~~Vr~ALhv 358 (371)
.++++.+.....++||.|+|+.+.|...+.. ++ . .....++++|.+++.+.|||+++||+||||
T Consensus 262 ~~~~~~~~~~~~~~i~~y~i~~~~C~~~~~~-------~~---~------~~~~~~~~~c~~~~~~~ylN~~~VrkALh~ 325 (454)
T KOG1282|consen 262 NKAVEEFDSKTTGDIDNYYILTPDCYPTSYE-------LK---K------PTDCYGYDPCLSDYAEKYLNRPEVRKALHA 325 (454)
T ss_pred HHHHHHHHHHHhccCchhhhcchhhcccccc-------cc---c------cccccccCCchhhhHHHhcCCHHHHHHhCC
Confidence 9999999844327999999999999862211 00 0 012346789998888999999999999999
Q ss_pred CCCCCCCCcccCC
Q 017435 359 NKTKIPYKWTACR 371 (371)
Q Consensus 359 ~~~~v~~~W~~Cs 371 (371)
+.+.++ +|+.||
T Consensus 326 ~~~~~~-~W~~Cn 337 (454)
T KOG1282|consen 326 NKTSIG-KWERCN 337 (454)
T ss_pred CCCCCC-cccccC
Confidence 977554 799997
No 2
>PLN02209 serine carboxypeptidase
Probab=100.00 E-value=7.5e-75 Score=585.46 Aligned_cols=295 Identities=30% Similarity=0.585 Sum_probs=252.2
Q ss_pred hccccccCCCCC-CCCcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCC
Q 017435 49 EADRIASLPGQP-KVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTA 127 (371)
Q Consensus 49 ~~~~v~~lpg~~-~~~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~ 127 (371)
+.|.|++|||+. .+++++++|||+|+++.+++||||||||+++|+++|+||||||||||||+. |+|.|+|||+++.++
T Consensus 21 ~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~-g~f~e~GP~~~~~~~ 99 (437)
T PLN02209 21 SGSIVKFLPGFKGPLPFELETGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLS-GLFFENGPLALKNKV 99 (437)
T ss_pred ccCeeecCCCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhh-hHHHhcCCceeccCC
Confidence 678899999985 488999999999998778899999999999999999999999999999995 999999999998763
Q ss_pred -----CceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEccccc
Q 017435 128 -----SGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYA 202 (371)
Q Consensus 128 -----~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYg 202 (371)
.++++||+||++.|||||||||+||||||+++.... .+++++|+++++||+.||++||+|+++||||+|||||
T Consensus 100 ~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~--~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYa 177 (437)
T PLN02209 100 YNGSVPSLVSTTYSWTKTANIIFLDQPVGSGFSYSKTPIER--TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYS 177 (437)
T ss_pred CCCCcccceeCCCchhhcCcEEEecCCCCCCccCCCCCCCc--cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcC
Confidence 478999999999999999999999999998766544 3567788999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhccCCCC-ceeeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHHhhcccCC---CCChHHH
Q 017435 203 GHYVPQLAREIMIHNSKSKH-PINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR---QKESDEC 278 (371)
Q Consensus 203 G~yvP~la~~i~~~n~~~~~-~inLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~~C~~~~---~~~~~~C 278 (371)
|||||.+|.+|+++|++... +||||||+||||++||..|..++++|++.||+|++++|+.+++.|.... ...+..|
T Consensus 178 G~yvP~~a~~i~~~~~~~~~~~inl~Gi~igng~td~~~q~~~~~~y~~~~glI~~~~~~~~~~~c~~~~~~~~~~~~~C 257 (437)
T PLN02209 178 GMIVPALVHEISKGNYICCNPPINLQGYVLGNPITHIEFEQNFRIPYAHGMSLISDELYESLKRICKGNYFSVDPSNKKC 257 (437)
T ss_pred ceehHHHHHHHHhhcccccCCceeeeeEEecCcccChhhhhhhHHHHHhccCCCCHHHHHHHHHhcccccccCCCChHHH
Confidence 99999999999998864333 3999999999999999999999999999999999999999999996421 1345789
Q ss_pred HHHHHHHHhhhcCCCCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcc---hhHhhccCcHHHHhh
Q 017435 279 ESLYTYAMDQEFGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTE---KYAEIYYNRPDVQKA 355 (371)
Q Consensus 279 ~~~~~~~~~~~~~~in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~---~~~~~YLN~~~Vr~A 355 (371)
.+++..+.... +.+|.|+++.+.|...... ....+|.. ..++.|||+++||+|
T Consensus 258 ~~~i~~~~~~~-~~~~~~~~~~~~c~~~~~~-----------------------~~~~~c~~~~~~~~~~ylN~~~V~~a 313 (437)
T PLN02209 258 LKLVEEYHKCT-DNINSHHTLIANCDDSNTQ-----------------------HISPDCYYYPYHLVECWANNESVREA 313 (437)
T ss_pred HHHHHHHHHHh-hcCCccccccccccccccc-----------------------cCCCCcccccHHHHHHHhCCHHHHHH
Confidence 99888876666 7789988665568542111 01125642 367899999999999
Q ss_pred hCCCCCCCCCCcccCC
Q 017435 356 LHANKTKIPYKWTACR 371 (371)
Q Consensus 356 Lhv~~~~v~~~W~~Cs 371 (371)
|||+..... .|..|+
T Consensus 314 L~v~~~~~~-~w~~~~ 328 (437)
T PLN02209 314 LHVDKGSIG-EWIRDH 328 (437)
T ss_pred hCCCCCCCC-CCcccc
Confidence 999853323 799995
No 3
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=100.00 E-value=7.6e-75 Score=585.21 Aligned_cols=293 Identities=32% Similarity=0.617 Sum_probs=252.5
Q ss_pred hccccccCCCCC-CCCcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccC-
Q 017435 49 EADRIASLPGQP-KVSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKT- 126 (371)
Q Consensus 49 ~~~~v~~lpg~~-~~~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~- 126 (371)
+.+.|++|||+. .+++++++|||+|+++.+.+||||||||+++|+++|+||||||||||||+. |+|+|+|||+++.+
T Consensus 19 ~~~~v~~lpg~~~~~~~~~~sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~-g~~~e~GP~~~~~~~ 97 (433)
T PLN03016 19 SASIVKFLPGFEGPLPFELETGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLG-GIIFENGPVGLKFEV 97 (433)
T ss_pred ccCeeecCcCCCCCCCeeEEEEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHH-HHHHhcCCceeeccc
Confidence 557899999985 478999999999998777899999999999999999999999999999995 99999999998643
Q ss_pred ----CCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEccccc
Q 017435 127 ----ASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYA 202 (371)
Q Consensus 127 ----~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYg 202 (371)
+.+++.||+||++.||||||||||||||||+++..+. .+|+++|+++++||+.||++||+|+++||||+|||||
T Consensus 98 ~~~~~~~l~~n~~sW~~~anllfiDqPvGtGfSy~~~~~~~--~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYa 175 (433)
T PLN03016 98 FNGSAPSLFSTTYSWTKMANIIFLDQPVGSGFSYSKTPIDK--TGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYS 175 (433)
T ss_pred cCCCCCceeeCCCchhhcCcEEEecCCCCCCccCCCCCCCc--cCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCcc
Confidence 3578999999999999999999999999998776543 4677788999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhccCCCC-ceeeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHHhhcccCC---CCChHHH
Q 017435 203 GHYVPQLAREIMIHNSKSKH-PINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR---QKESDEC 278 (371)
Q Consensus 203 G~yvP~la~~i~~~n~~~~~-~inLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~~C~~~~---~~~~~~C 278 (371)
|||||.+|++|+++|.+... +||||||+||||++||..|..++.+|++.||+|++++++.+++.|.... ...+..|
T Consensus 176 G~yvP~la~~i~~~n~~~~~~~inLkGi~iGNg~t~~~~~~~~~~~y~~~~glI~~~~~~~i~~~c~~~~~~~~~~~~~C 255 (433)
T PLN03016 176 GMIVPALVQEISQGNYICCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQC 255 (433)
T ss_pred ceehHHHHHHHHhhcccccCCcccceeeEecCCCcCchhhhhhHHHHHHhcCCCCHHHHHHHHHHhccccccCCCchHHH
Confidence 99999999999998865333 3999999999999999999999999999999999999999999997432 1346789
Q ss_pred HHHHHHHHhhhcCCCCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcc---hhHhhccCcHHHHhh
Q 017435 279 ESLYTYAMDQEFGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTE---KYAEIYYNRPDVQKA 355 (371)
Q Consensus 279 ~~~~~~~~~~~~~~in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~---~~~~~YLN~~~Vr~A 355 (371)
..++..+.... +++|+|||+.+.|.... + ..+.|.. ..++.|||+++||+|
T Consensus 256 ~~~~~~~~~~~-~~~n~yni~~~~~~~~~-----------------------~--~~~~c~~~~~~~~~~ylN~~~V~~a 309 (433)
T PLN03016 256 LKLTEEYHKCT-AKINIHHILTPDCDVTN-----------------------V--TSPDCYYYPYHLIECWANDESVREA 309 (433)
T ss_pred HHHHHHHHHHh-cCCChhhccCCcccccc-----------------------c--CCCcccccchHHHHHHhCCHHHHHH
Confidence 99988877777 89999999976663210 0 0125653 367899999999999
Q ss_pred hCCCCCCCCCCcccCC
Q 017435 356 LHANKTKIPYKWTACR 371 (371)
Q Consensus 356 Lhv~~~~v~~~W~~Cs 371 (371)
|||+.... .+|..||
T Consensus 310 L~v~~~~~-~~w~~cn 324 (433)
T PLN03016 310 LHIEKGSK-GKWARCN 324 (433)
T ss_pred hCCCCCCC-CCCccCC
Confidence 99975322 2799997
No 4
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=100.00 E-value=2.9e-74 Score=576.55 Aligned_cols=293 Identities=42% Similarity=0.755 Sum_probs=232.5
Q ss_pred CCCCC-CCcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCC-CceeeCC
Q 017435 57 PGQPK-VSFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTA-SGLYLNK 134 (371)
Q Consensus 57 pg~~~-~~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~-~~l~~n~ 134 (371)
||+.. +++++|||||+++++.+.+||||||||+++|+++|||||||||||||||. |+|.|+|||+++.++ .+++.||
T Consensus 1 pg~~~~~~~~~~sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~-g~f~e~GP~~~~~~~~~~l~~n~ 79 (415)
T PF00450_consen 1 PGLDEPVPFKQYSGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMW-GLFGENGPFRINPDGPYTLEDNP 79 (415)
T ss_dssp TT-SS-SSSEEEEEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THH-HHHCTTSSEEEETTSTSEEEE-T
T ss_pred CCCCCCCCceEEEEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceecccc-ccccccCceEEeecccccccccc
Confidence 77664 78999999999997778999999999999999999999999999999995 999999999999553 6899999
Q ss_pred CCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHH
Q 017435 135 LSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIM 214 (371)
Q Consensus 135 ~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~ 214 (371)
+||+++||||||||||||||||+....++ ..+++++|+++++||+.||.+||+|+++||||+||||||+|||.+|.+|+
T Consensus 80 ~sW~~~an~l~iD~PvGtGfS~~~~~~~~-~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~ 158 (415)
T PF00450_consen 80 YSWNKFANLLFIDQPVGTGFSYGNDPSDY-VWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYIL 158 (415)
T ss_dssp T-GGGTSEEEEE--STTSTT-EESSGGGG-S-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHH
T ss_pred cccccccceEEEeecCceEEeeccccccc-cchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhh
Confidence 99999999999999999999999877654 35899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCc-eeeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHHhhcccC--CCCChHHHHHHHHHHHhhh--
Q 017435 215 IHNSKSKHP-INLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFR--RQKESDECESLYTYAMDQE-- 289 (371)
Q Consensus 215 ~~n~~~~~~-inLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~~C~~~--~~~~~~~C~~~~~~~~~~~-- 289 (371)
++|.+...+ ||||||+||||++||..|..++.+|++.||+|++++++.+.+.|... ......+|..+...+....
T Consensus 159 ~~~~~~~~~~inLkGi~IGng~~dp~~~~~s~~~~~~~~gli~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 238 (415)
T PF00450_consen 159 QQNKKGDQPKINLKGIAIGNGWIDPRIQYNSYADYAYYHGLIDDQQYDDLNKACEACPQCQKAITECAAALDELSCQYAI 238 (415)
T ss_dssp HHTCC--STTSEEEEEEEESE-SBHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHTTSHSSSCCHHHHHHHHHHHHHHCHH
T ss_pred hccccccccccccccceecCccccccccceeecccccccCcccHHHHHHHHHHhhccccccchhhHHHHHHHhhhhhccc
Confidence 999764334 99999999999999999999999999999999999999999999643 2346688998888877531
Q ss_pred ---cCCCCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcchhHhhccCcHHHHhhhCCCCCCCCCC
Q 017435 290 ---FGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTEKYAEIYYNRPDVQKALHANKTKIPYK 366 (371)
Q Consensus 290 ---~~~in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~~~~~~YLN~~~Vr~ALhv~~~~v~~~ 366 (371)
.+++|+|||+.++|... .. . .......+++..+.+..|||+++||+||||+... ..+
T Consensus 239 ~~~~~~~n~Ydi~~~~~~~~-~~------------~------~~~~~~~~~~~~~~~~~yln~~~Vr~aL~v~~~~-~~~ 298 (415)
T PF00450_consen 239 SQCNGGINPYDIRQPCYNPS-RS------------S------YDNSPSNDPPDDDYLEAYLNRPDVREALHVPVDS-NVN 298 (415)
T ss_dssp HHHHTTSETTSTTSEETT-S-HC------------T------TCCCCTTTTTCHHHHHHHHTSHHHHHHTT-STTT-SSS
T ss_pred ccccCCcceeeeeccccccc-cc------------c------ccccccccccchhhHHHHhccHHHHHhhCCCccc-CCc
Confidence 26999999999743311 00 0 0001112234457889999999999999997322 237
Q ss_pred cccCC
Q 017435 367 WTACR 371 (371)
Q Consensus 367 W~~Cs 371 (371)
|+.|+
T Consensus 299 w~~~~ 303 (415)
T PF00450_consen 299 WQSCN 303 (415)
T ss_dssp --SB-
T ss_pred ccccC
Confidence 99996
No 5
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=100.00 E-value=7.2e-68 Score=539.57 Aligned_cols=272 Identities=30% Similarity=0.636 Sum_probs=230.5
Q ss_pred CCcceEEeEEEecC-CCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCC
Q 017435 62 VSFQQFSGYVPVNK-VPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTE 140 (371)
Q Consensus 62 ~~~~~~sGyl~v~~-~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~ 140 (371)
.++++|+|||+|++ ..+++||||||||+.+|+++|||||||||||||||. |+|.|+|||+|+.++.+++.||+||++.
T Consensus 43 ~~~~~~sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~-G~f~E~GP~~i~~~~~~~~~n~~sW~~~ 121 (462)
T PTZ00472 43 PSVNQWSGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMF-ALLAENGPCLMNETTGDIYNNTYSWNNE 121 (462)
T ss_pred CCCcceeEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHH-hhhccCCCeEEeCCCCceeECCcccccc
Confidence 56899999999975 457899999999999999999999999999999995 9999999999999877899999999999
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
+||||||||+||||||+... ++ ..+++++|+|+++||+.||++||+++++|+||+||||||+|+|.+|.+|+++|+.+
T Consensus 122 ~~~l~iDqP~G~G~S~~~~~-~~-~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~ 199 (462)
T PTZ00472 122 AYVIYVDQPAGVGFSYADKA-DY-DHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKG 199 (462)
T ss_pred cCeEEEeCCCCcCcccCCCC-CC-CCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhcccc
Confidence 99999999999999998654 33 25778999999999999999999999999999999999999999999999998764
Q ss_pred CC-ceeeeEEEeeccccCcccccccchhhhcc-------cccCCHHHHHHHHh---hc-------ccCCCCChHHHHHHH
Q 017435 221 KH-PINLKGIMVGNAVTDNYYDNLGTVTYWWS-------HAMISDKTYQQLIN---TC-------DFRRQKESDECESLY 282 (371)
Q Consensus 221 ~~-~inLkGi~igng~~d~~~~~~~~~~~a~~-------~gli~~~~~~~~~~---~C-------~~~~~~~~~~C~~~~ 282 (371)
+. +||||||+||||++||.+|..++.+|+|. +|+|++++++++.+ .| ..........|..+.
T Consensus 200 ~~~~inLkGi~IGNg~~dp~~q~~~~~~~a~~~~~~~~~~~li~~~~~~~~~~~~~~c~~~~~~c~~~~~~~~~~c~~a~ 279 (462)
T PTZ00472 200 DGLYINLAGLAVGNGLTDPYTQYASYPRLAWDWCKEKLGAPCVSEEAYDEMSSMVPACQKKIKECNSNPDDADSSCSVAR 279 (462)
T ss_pred CCceeeeEEEEEeccccChhhhcccHHHHhhhcccccCCCCccCHHHHHHHHHHHHHHHHHHHhccccCCCcchHHHHHH
Confidence 43 49999999999999999999999999985 58999999988864 24 322112234565554
Q ss_pred HHHHhhh----cCCCCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcc-hhHhhccCcHHHHhhhC
Q 017435 283 TYAMDQE----FGNIDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTE-KYAEIYYNRPDVQKALH 357 (371)
Q Consensus 283 ~~~~~~~----~~~in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~-~~~~~YLN~~~Vr~ALh 357 (371)
..|.... .+++|+||||.+ |.. ++|.+ ..++.|||+++||+|||
T Consensus 280 ~~c~~~~~~~~~~g~n~Ydi~~~-c~~------------------------------~~c~~~~~~~~yLN~~~Vq~AL~ 328 (462)
T PTZ00472 280 ALCNEYIAVYSATGLNNYDIRKP-CIG------------------------------PLCYNMDNTIAFMNREDVQSSLG 328 (462)
T ss_pred HHHHHHHHHHHhcCCChhheecc-CCC------------------------------CCccCHHHHHHHhCCHHHHHHhC
Confidence 4443211 157999999985 732 25653 46899999999999999
Q ss_pred CCCCCCCCCcccCC
Q 017435 358 ANKTKIPYKWTACR 371 (371)
Q Consensus 358 v~~~~v~~~W~~Cs 371 (371)
|+. .+|+.|+
T Consensus 329 v~~----~~w~~c~ 338 (462)
T PTZ00472 329 VKP----ATWQSCN 338 (462)
T ss_pred CCC----CCceeCC
Confidence 973 2799996
No 6
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-52 Score=412.33 Aligned_cols=270 Identities=28% Similarity=0.522 Sum_probs=212.5
Q ss_pred cceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccC-CCceeeCCCCCcCCcc
Q 017435 64 FQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKT-ASGLYLNKLSWNTEAN 142 (371)
Q Consensus 64 ~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~-~~~l~~n~~sW~~~an 142 (371)
+++++||.... -.+|||+|+++++|+++|+||||||||||||+. |+|+|+||++|+.+ ++.--.||+||+.++|
T Consensus 74 v~~~~g~~d~e----d~~ffy~fe~~ndp~~rPvi~wlNGGPGcSS~~-g~l~elGP~rI~~~~~P~~~~NP~SW~~~ad 148 (498)
T COG2939 74 VRDYTGYPDAE----DFFFFYTFESPNDPANRPVIFWLNGGPGCSSVT-GLLGELGPKRIQSGTSPSYPDNPGSWLDFAD 148 (498)
T ss_pred hhhccCCcccc----eeEEEEEecCCCCCCCCceEEEecCCCChHhhh-hhhhhcCCeeeeCCCCCCCCCCccccccCCc
Confidence 44555553222 139999999999999999999999999999994 99999999999988 4322269999999999
Q ss_pred eEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCC--CeEEEcccccccchHHHHHHHHHhccCC
Q 017435 143 LLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGR--EVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 143 ll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~--~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
|||||||+||||||+.... . +.+.+.+.+|++.|++.||+.||++.+. |+||+||||||+|+|.||..|+++|...
T Consensus 149 LvFiDqPvGTGfS~a~~~e-~-~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~ 226 (498)
T COG2939 149 LVFIDQPVGTGFSRALGDE-K-KKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIAL 226 (498)
T ss_pred eEEEecCcccCcccccccc-c-ccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhcccc
Confidence 9999999999999983322 2 2467889999999999999999999988 9999999999999999999999997543
Q ss_pred CCceeeeEEEeecc-ccCcccccccchhhhcc----cccCCHHHHHHHHhhcccCC----------CCChHHHHHHHHHH
Q 017435 221 KHPINLKGIMVGNA-VTDNYYDNLGTVTYWWS----HAMISDKTYQQLINTCDFRR----------QKESDECESLYTYA 285 (371)
Q Consensus 221 ~~~inLkGi~igng-~~d~~~~~~~~~~~a~~----~gli~~~~~~~~~~~C~~~~----------~~~~~~C~~~~~~~ 285 (371)
...+||++++|||| +|||..|+..+..++.. ++..+.+.++++.+.|.... ......|..+...+
T Consensus 227 ~~~~nlssvligng~~t~Pl~~~~~y~~~a~~~~~~~~~l~~e~~~~~~~~~~~d~~~~l~~g~~~~~~~~~c~~~~~~~ 306 (498)
T COG2939 227 NGNVNLSSVLIGNGLWTDPLTQYLTYEPIAAEKGPYDGVLSSEECTKAEKYCAGDYCLALMKGCYDSGSLQPCENASAYL 306 (498)
T ss_pred CCceEeeeeeecCCcccChhHHHHHhhhhHhhcCCCCCcCcHHHHHHHHHHhhhhhHhhhccCCCCchhhhHHHHHHHHH
Confidence 44599999999999 99999999999999875 45666788888888776421 23345688777776
Q ss_pred Hhhh-----cCC---CCccccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcch--hHhhccCcHHHHhh
Q 017435 286 MDQE-----FGN---IDQYNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTEK--YAEIYYNRPDVQKA 355 (371)
Q Consensus 286 ~~~~-----~~~---in~Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~~--~~~~YLN~~~Vr~A 355 (371)
.... ..+ +|+||++.. |.+.... --|+++ .+.+|+|.+.+|++
T Consensus 307 ~~~~~~~~~r~~~~~~n~y~~r~~-~~d~g~~--------------------------~~~y~~~~~~ld~~~~~~~~~~ 359 (498)
T COG2939 307 TGLMREYVGRAGGRLLNVYDIREE-CRDPGLG--------------------------GSCYDTLSTSLDYFNFDPEQEV 359 (498)
T ss_pred Hhcchhhhccccccccccccchhh-cCCCCcc--------------------------cccccceeeccccccccchhcc
Confidence 6432 124 899999984 8652110 134442 56778888888888
Q ss_pred hCCCCCCCCCCcccCC
Q 017435 356 LHANKTKIPYKWTACR 371 (371)
Q Consensus 356 Lhv~~~~v~~~W~~Cs 371 (371)
++...+ +|..|+
T Consensus 360 ~~~~~d----~~~~c~ 371 (498)
T COG2939 360 NDPEVD----NISGCT 371 (498)
T ss_pred cccccc----chhccc
Confidence 876543 577774
No 7
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=100.00 E-value=1.6e-46 Score=366.59 Aligned_cols=203 Identities=32% Similarity=0.564 Sum_probs=169.5
Q ss_pred CcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 140 EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
.|||||||||+||||||+++..++ ++|+++|+|++.||+.||++||+|+++||||+||||||||||.||.+|+++|.+
T Consensus 1 ~aNvLfiDqPvGvGfSy~~~~~~~--~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~ 78 (319)
T PLN02213 1 MANIIFLDQPVGSGFSYSKTPIDK--TGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI 78 (319)
T ss_pred CccEEEecCCCCCCCCCCCCCCCc--cccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccc
Confidence 489999999999999998766543 467778899999999999999999999999999999999999999999998865
Q ss_pred CCC-ceeeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHHhhcccCC---CCChHHHHHHHHHHHhhhcCCCCc
Q 017435 220 SKH-PINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLINTCDFRR---QKESDECESLYTYAMDQEFGNIDQ 295 (371)
Q Consensus 220 ~~~-~inLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~~C~~~~---~~~~~~C~~~~~~~~~~~~~~in~ 295 (371)
.+. +||||||+|||||+||..|..++.+|++.||+|++++++.+++.|.... ......|.+++..+.... +.+|+
T Consensus 79 ~~~~~inLkGi~IGNg~t~~~~~~~~~~~~~~~~gli~~~~~~~~~~~c~~~~~~~~~~~~~c~~~~~~~~~~~-~~~~~ 157 (319)
T PLN02213 79 CCEPPINLQGYMLGNPVTYMDFEQNFRIPYAYGMGLISDEIYEPMKRICNGNYYNVDPSNTQCLKLTEEYHKCT-AKINI 157 (319)
T ss_pred ccCCceeeeEEEeCCCCCCccccchhHhhHHHhcCCCCHHHHHHHHHhcCCCccCCCCCcHHHHHHHHHHHHHH-hcCCH
Confidence 433 4999999999999999999999999999999999999999999997432 134678999888777777 88999
Q ss_pred cccCCCCCCCCCchhhhhhhccccCCCCCCccccccccCCCCCcc---hhHhhccCcHHHHhhhCCCCCCCCCCcccCC
Q 017435 296 YNIYAAPCNNSDGSAAATRHLMRLPHRPHNYKTLRRISGYDPCTE---KYAEIYYNRPDVQKALHANKTKIPYKWTACR 371 (371)
Q Consensus 296 Ydi~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpC~~---~~~~~YLN~~~Vr~ALhv~~~~v~~~W~~Cs 371 (371)
||++.+.|... . . ..+.|.. ..++.|||+++||+||||+... ..+|+.||
T Consensus 158 ~~~~~~~~~~~-~----------------------~--~~~~c~~~~~~~~~~ylN~~~V~~aL~v~~~~-~~~w~~c~ 210 (319)
T PLN02213 158 HHILTPDCDVT-N----------------------V--TSPDCYYYPYHLIECWANDESVREALHIEKGS-KGKWARCN 210 (319)
T ss_pred hhcccCcccCc-c----------------------C--CCCCcccchhHHHHHHhCCHHHHHHhCcCCCC-CCCCccCC
Confidence 99997656321 0 0 0125652 3689999999999999997532 13799997
No 8
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-43 Score=331.01 Aligned_cols=231 Identities=26% Similarity=0.446 Sum_probs=196.3
Q ss_pred eEEeEEEecCCCCceEEEEEEeecCC-CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceE
Q 017435 66 QFSGYVPVNKVPGRALFYWLTEATHN-PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLL 144 (371)
Q Consensus 66 ~~sGyl~v~~~~~~~lfy~f~es~~~-~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll 144 (371)
+-.||++++. +.|+|||++.+..+ ...+|+.|||+||||.||..||+|.|+||...+ +.+|+.+|.+.|+||
T Consensus 3 ~~wg~v~vr~--~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~-----~~~r~~TWlk~adll 75 (414)
T KOG1283|consen 3 EDWGYVDVRT--GAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLD-----GSPRDWTWLKDADLL 75 (414)
T ss_pred ccccceeeec--CceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccC-----CCcCCchhhhhccEE
Confidence 4579999985 78999999988654 378899999999999999889999999999987 556999999999999
Q ss_pred EeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCce
Q 017435 145 FLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPI 224 (371)
Q Consensus 145 ~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~i 224 (371)
|||.|||+||||.+..+.| +++++++|.|+.+.|+.||..||||+.+||||+-|||||+..|.+|..+....+.++-..
T Consensus 76 fvDnPVGaGfSyVdg~~~Y-~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~ 154 (414)
T KOG1283|consen 76 FVDNPVGAGFSYVDGSSAY-TTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKL 154 (414)
T ss_pred EecCCCcCceeeecCcccc-cccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceee
Confidence 9999999999999887666 469999999999999999999999999999999999999999999999999988766669
Q ss_pred eeeEEEeeccccCcccccccchhhhcccccCCHHHHHHHH---hhcccC-C----CCChHHHHHHHHHHHhhhcCCCCcc
Q 017435 225 NLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDKTYQQLI---NTCDFR-R----QKESDECESLYTYAMDQEFGNIDQY 296 (371)
Q Consensus 225 nLkGi~igng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~---~~C~~~-~----~~~~~~C~~~~~~~~~~~~~~in~Y 296 (371)
|+.|+++|++||+|..-..+|.+|++..+++|+...+... .+|... + ..++..+...-+-+..+. +++|.|
T Consensus 155 nf~~VaLGDSWISP~D~V~SWGP~L~~~S~LDD~GLds~ns~A~k~~~~v~~g~~~~AT~~Wg~~e~li~~~s-n~VdfY 233 (414)
T KOG1283|consen 155 NFIGVALGDSWISPEDFVFSWGPLLKHVSRLDDNGLDSSNSGAEKGKGGVDGGKWGGATGGWGGGENLISRES-NGVDFY 233 (414)
T ss_pred cceeEEccCcccChhHhhhcchHHHHhhhhhcccCccchhhhHHhhcccccCCccccccccccCcCcceeecc-cCccee
Confidence 9999999999999999999999999999999998876654 345321 0 123333333434444556 789999
Q ss_pred ccCCCCCCC
Q 017435 297 NIYAAPCNN 305 (371)
Q Consensus 297 di~~~~C~~ 305 (371)
||.++.-.+
T Consensus 234 Nil~~t~~d 242 (414)
T KOG1283|consen 234 NILTKTLGD 242 (414)
T ss_pred eeeccCCCc
Confidence 999874433
No 9
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.48 E-value=3.8e-07 Score=83.39 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=78.0
Q ss_pred EEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCC
Q 017435 82 FYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSS 161 (371)
Q Consensus 82 fy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~ 161 (371)
+|..+.. ..++.|+||+++|.+|.+.. +..+.+ -+.+..+++.+|.| |.|.|-.....
T Consensus 2 ~~~~~~~--~~~~~~~iv~lhG~~~~~~~-~~~~~~------------------~l~~~~~vi~~D~~-G~G~S~~~~~~ 59 (257)
T TIGR03611 2 HYELHGP--PDADAPVVVLSSGLGGSGSY-WAPQLD------------------VLTQRFHVVTYDHR-GTGRSPGELPP 59 (257)
T ss_pred EEEEecC--CCCCCCEEEEEcCCCcchhH-HHHHHH------------------HHHhccEEEEEcCC-CCCCCCCCCcc
Confidence 4554432 22467999999999887766 343321 11234699999988 77776533222
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 162 DLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 162 ~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
. .+.++.++++.+++... ...+++|+|+|+||..+..+|....+. ++++++.+|+.++
T Consensus 60 ~---~~~~~~~~~~~~~i~~~-------~~~~~~l~G~S~Gg~~a~~~a~~~~~~---------v~~~i~~~~~~~~ 117 (257)
T TIGR03611 60 G---YSIAHMADDVLQLLDAL-------NIERFHFVGHALGGLIGLQLALRYPER---------LLSLVLINAWSRP 117 (257)
T ss_pred c---CCHHHHHHHHHHHHHHh-------CCCcEEEEEechhHHHHHHHHHHChHH---------hHHheeecCCCCC
Confidence 2 35566777777777532 345799999999999988888754432 7888888887665
No 10
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.47 E-value=5.3e-07 Score=83.52 Aligned_cols=130 Identities=21% Similarity=0.287 Sum_probs=80.5
Q ss_pred EEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEe
Q 017435 67 FSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFL 146 (371)
Q Consensus 67 ~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~i 146 (371)
..++++++ +..+.|.-+. .+...|.||+++||||++...+..+.+. +. + +-.+++.+
T Consensus 3 ~~~~~~~~---~~~~~~~~~~---~~~~~~~vl~~hG~~g~~~~~~~~~~~~-----------l~-~-----~g~~vi~~ 59 (288)
T TIGR01250 3 IEGIITVD---GGYHLFTKTG---GEGEKIKLLLLHGGPGMSHEYLENLREL-----------LK-E-----EGREVIMY 59 (288)
T ss_pred ccceecCC---CCeEEEEecc---CCCCCCeEEEEcCCCCccHHHHHHHHHH-----------HH-h-----cCCEEEEE
Confidence 34566665 3445554322 2334688999999999986532333210 11 1 14789999
Q ss_pred ecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceee
Q 017435 147 ETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINL 226 (371)
Q Consensus 147 D~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inL 226 (371)
|.| |.|.|.......- ..+.+..++++..++.. +..++++|+|+|+||..+..+|..-. ..+
T Consensus 60 d~~-G~G~s~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~liG~S~Gg~ia~~~a~~~p---------~~v 121 (288)
T TIGR01250 60 DQL-GCGYSDQPDDSDE-LWTIDYFVDELEEVREK-------LGLDKFYLLGHSWGGMLAQEYALKYG---------QHL 121 (288)
T ss_pred cCC-CCCCCCCCCcccc-cccHHHHHHHHHHHHHH-------cCCCcEEEEEeehHHHHHHHHHHhCc---------ccc
Confidence 988 7777653221110 12456667776665543 23456999999999998888886432 348
Q ss_pred eEEEeeccccC
Q 017435 227 KGIMVGNAVTD 237 (371)
Q Consensus 227 kGi~igng~~d 237 (371)
+++++.++...
T Consensus 122 ~~lvl~~~~~~ 132 (288)
T TIGR01250 122 KGLIISSMLDS 132 (288)
T ss_pred ceeeEeccccc
Confidence 88998887654
No 11
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.46 E-value=1.9e-06 Score=82.75 Aligned_cols=140 Identities=21% Similarity=0.236 Sum_probs=88.1
Q ss_pred cccccCCCCCCCCcceEEeEEEecCCCCc--eEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCC
Q 017435 51 DRIASLPGQPKVSFQQFSGYVPVNKVPGR--ALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTAS 128 (371)
Q Consensus 51 ~~v~~lpg~~~~~~~~~sGyl~v~~~~~~--~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~ 128 (371)
.++.+||..+ + .-.|++++...|. +++|.- ..++ +.|.||+++|.|+.+..+ ..+.+
T Consensus 9 ~~~~~~~~~~---~--~~~~~~~~~~~~~~~~i~y~~---~G~~-~~~~lvliHG~~~~~~~w-~~~~~----------- 67 (302)
T PRK00870 9 SRFENLPDYP---F--APHYVDVDDGDGGPLRMHYVD---EGPA-DGPPVLLLHGEPSWSYLY-RKMIP----------- 67 (302)
T ss_pred ccccCCcCCC---C--CceeEeecCCCCceEEEEEEe---cCCC-CCCEEEEECCCCCchhhH-HHHHH-----------
Confidence 4566777655 2 4567888864444 566652 2233 468899999998887773 43331
Q ss_pred ceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHH
Q 017435 129 GLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQ 208 (371)
Q Consensus 129 ~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~ 208 (371)
.|.. +-.+++.+|.| |.|.| .........+.+..++++.++|+. +...++.|+|+|+||..+-.
T Consensus 68 ~L~~------~gy~vi~~Dl~-G~G~S--~~~~~~~~~~~~~~a~~l~~~l~~-------l~~~~v~lvGhS~Gg~ia~~ 131 (302)
T PRK00870 68 ILAA------AGHRVIAPDLI-GFGRS--DKPTRREDYTYARHVEWMRSWFEQ-------LDLTDVTLVCQDWGGLIGLR 131 (302)
T ss_pred HHHh------CCCEEEEECCC-CCCCC--CCCCCcccCCHHHHHHHHHHHHHH-------cCCCCEEEEEEChHHHHHHH
Confidence 1111 23689999988 55554 322111112456677777766653 23458999999999998888
Q ss_pred HHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 209 LAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 209 la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+|..-.+ .++++++.++.+
T Consensus 132 ~a~~~p~---------~v~~lvl~~~~~ 150 (302)
T PRK00870 132 LAAEHPD---------RFARLVVANTGL 150 (302)
T ss_pred HHHhChh---------heeEEEEeCCCC
Confidence 8864332 288888887643
No 12
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.45 E-value=1.3e-06 Score=81.46 Aligned_cols=123 Identities=16% Similarity=0.068 Sum_probs=80.3
Q ss_pred EEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecc
Q 017435 70 YVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETP 149 (371)
Q Consensus 70 yl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~P 149 (371)
|++++ +.+++|- +..+++.|.||+++|.+|.+.. +..+.+ .+ .+..+++.+|.|
T Consensus 10 ~~~~~---~~~~~~~----~~g~~~~~~vv~~hG~~~~~~~-~~~~~~-----------~l-------~~~~~vi~~D~~ 63 (278)
T TIGR03056 10 RVTVG---PFHWHVQ----DMGPTAGPLLLLLHGTGASTHS-WRDLMP-----------PL-------ARSFRVVAPDLP 63 (278)
T ss_pred eeeEC---CEEEEEE----ecCCCCCCeEEEEcCCCCCHHH-HHHHHH-----------HH-------hhCcEEEeecCC
Confidence 44554 4566653 2344556999999999887766 333321 11 123689999988
Q ss_pred cccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEE
Q 017435 150 AGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGI 229 (371)
Q Consensus 150 vGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi 229 (371)
|-|.|....... .+.+..|+++.++++. +..++++|+|+|+||..+..+|.... -.++++
T Consensus 64 -G~G~S~~~~~~~---~~~~~~~~~l~~~i~~-------~~~~~~~lvG~S~Gg~~a~~~a~~~p---------~~v~~~ 123 (278)
T TIGR03056 64 -GHGFTRAPFRFR---FTLPSMAEDLSALCAA-------EGLSPDGVIGHSAGAAIALRLALDGP---------VTPRMV 123 (278)
T ss_pred -CCCCCCCccccC---CCHHHHHHHHHHHHHH-------cCCCCceEEEECccHHHHHHHHHhCC---------cccceE
Confidence 666664322211 3566778888877763 22457899999999987777765332 237899
Q ss_pred EeeccccCc
Q 017435 230 MVGNAVTDN 238 (371)
Q Consensus 230 ~igng~~d~ 238 (371)
++.++..++
T Consensus 124 v~~~~~~~~ 132 (278)
T TIGR03056 124 VGINAALMP 132 (278)
T ss_pred EEEcCcccc
Confidence 998887664
No 13
>PHA02857 monoglyceride lipase; Provisional
Probab=98.37 E-value=2e-06 Score=81.17 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=82.2
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-CcceEEeeccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANLLFLETPAGVGFSY 156 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anll~iD~PvGtGfSy 156 (371)
|..|+|.+++.. +..+|+||.++|..+++.. +-.+.+ .+.+ -.+++.+|.| |.|.|-
T Consensus 10 g~~l~~~~~~~~--~~~~~~v~llHG~~~~~~~-~~~~~~------------------~l~~~g~~via~D~~-G~G~S~ 67 (276)
T PHA02857 10 NDYIYCKYWKPI--TYPKALVFISHGAGEHSGR-YEELAE------------------NISSLGILVFSHDHI-GHGRSN 67 (276)
T ss_pred CCEEEEEeccCC--CCCCEEEEEeCCCccccch-HHHHHH------------------HHHhCCCEEEEccCC-CCCCCC
Confidence 678999888764 3456899999999777766 343331 1223 3689999988 667664
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 157 TNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
.. .....+-....+|+..++..+-+.++ ..+++|+|+|.||..+..+|.+- . -+++|+++.+|.+
T Consensus 68 ~~---~~~~~~~~~~~~d~~~~l~~~~~~~~---~~~~~lvG~S~GG~ia~~~a~~~---p------~~i~~lil~~p~~ 132 (276)
T PHA02857 68 GE---KMMIDDFGVYVRDVVQHVVTIKSTYP---GVPVFLLGHSMGATISILAAYKN---P------NLFTAMILMSPLV 132 (276)
T ss_pred Cc---cCCcCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEcCchHHHHHHHHHhC---c------cccceEEEecccc
Confidence 32 11111333456777777765544443 56899999999998666666431 1 2489999999987
Q ss_pred Ccc
Q 017435 237 DNY 239 (371)
Q Consensus 237 d~~ 239 (371)
++.
T Consensus 133 ~~~ 135 (276)
T PHA02857 133 NAE 135 (276)
T ss_pred ccc
Confidence 643
No 14
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.35 E-value=2.5e-06 Score=82.51 Aligned_cols=125 Identities=18% Similarity=0.287 Sum_probs=77.4
Q ss_pred EeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCC-cCCcceEEe
Q 017435 68 SGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSW-NTEANLLFL 146 (371)
Q Consensus 68 sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW-~~~anll~i 146 (371)
.+|+.+.+ +..++|+-. .+.+.|.||+++|+||.++.. .... .| .+..+++.+
T Consensus 6 ~~~~~~~~--~~~l~y~~~----g~~~~~~lvllHG~~~~~~~~-~~~~-------------------~~~~~~~~vi~~ 59 (306)
T TIGR01249 6 SGYLNVSD--NHQLYYEQS----GNPDGKPVVFLHGGPGSGTDP-GCRR-------------------FFDPETYRIVLF 59 (306)
T ss_pred CCeEEcCC--CcEEEEEEC----cCCCCCEEEEECCCCCCCCCH-HHHh-------------------ccCccCCEEEEE
Confidence 47888775 677888632 222345578999999986542 1100 11 134789999
Q ss_pred ecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceee
Q 017435 147 ETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINL 226 (371)
Q Consensus 147 D~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inL 226 (371)
|.| |.|.|... ......+.++.++++..+++ .. ...+++++|+||||..+-.+|.+-.+. +
T Consensus 60 D~~-G~G~S~~~--~~~~~~~~~~~~~dl~~l~~----~l---~~~~~~lvG~S~GG~ia~~~a~~~p~~---------v 120 (306)
T TIGR01249 60 DQR-GCGKSTPH--ACLEENTTWDLVADIEKLRE----KL---GIKNWLVFGGSWGSTLALAYAQTHPEV---------V 120 (306)
T ss_pred CCC-CCCCCCCC--CCcccCCHHHHHHHHHHHHH----Hc---CCCCEEEEEECHHHHHHHHHHHHChHh---------h
Confidence 988 77766532 11111234455666555544 22 245799999999998887777654332 7
Q ss_pred eEEEeeccccC
Q 017435 227 KGIMVGNAVTD 237 (371)
Q Consensus 227 kGi~igng~~d 237 (371)
+++++.+..+.
T Consensus 121 ~~lvl~~~~~~ 131 (306)
T TIGR01249 121 TGLVLRGIFLL 131 (306)
T ss_pred hhheeeccccC
Confidence 88888776654
No 15
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.33 E-value=2.9e-06 Score=81.01 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=83.0
Q ss_pred eEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeec
Q 017435 69 GYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLET 148 (371)
Q Consensus 69 Gyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~ 148 (371)
=|++++ +.+++|.- ..+ ..|.||++||.++++.++ ..+.+ . +.+.++++.+|.
T Consensus 11 ~~~~~~---~~~i~y~~----~G~-~~~~vlllHG~~~~~~~w-~~~~~-----------~-------L~~~~~vi~~Dl 63 (294)
T PLN02824 11 RTWRWK---GYNIRYQR----AGT-SGPALVLVHGFGGNADHW-RKNTP-----------V-------LAKSHRVYAIDL 63 (294)
T ss_pred ceEEEc---CeEEEEEE----cCC-CCCeEEEECCCCCChhHH-HHHHH-----------H-------HHhCCeEEEEcC
Confidence 366665 56677652 122 237899999999999874 54442 1 234469999998
Q ss_pred ccccccccccCCCCC---CCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCcee
Q 017435 149 PAGVGFSYTNRSSDL---LDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPIN 225 (371)
Q Consensus 149 PvGtGfSy~~~~~~~---~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~in 225 (371)
| |.|.|-....... ...+.++.|+++.++|... ...+++|+|+|.||..+-.+|.+-.+.
T Consensus 64 p-G~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l-------~~~~~~lvGhS~Gg~va~~~a~~~p~~--------- 126 (294)
T PLN02824 64 L-GYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV-------VGDPAFVICNSVGGVVGLQAAVDAPEL--------- 126 (294)
T ss_pred C-CCCCCCCCccccccccccCCHHHHHHHHHHHHHHh-------cCCCeEEEEeCHHHHHHHHHHHhChhh---------
Confidence 8 6666543221100 0135667788888888743 246899999999999988888654443
Q ss_pred eeEEEeecccc
Q 017435 226 LKGIMVGNAVT 236 (371)
Q Consensus 226 LkGi~igng~~ 236 (371)
++++++.|+..
T Consensus 127 v~~lili~~~~ 137 (294)
T PLN02824 127 VRGVMLINISL 137 (294)
T ss_pred eeEEEEECCCc
Confidence 89999998764
No 16
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.17 E-value=7.4e-06 Score=75.86 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcH
Q 017435 90 HNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDG 169 (371)
Q Consensus 90 ~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~ 169 (371)
.++.++|.||+++|.+|.+.. +..+.+ . +.+..+++.+|.| |-|.|.. ... .+.+
T Consensus 11 ~~~~~~~~iv~lhG~~~~~~~-~~~~~~-----------~-------l~~~~~vi~~D~~-G~G~s~~--~~~---~~~~ 65 (255)
T PRK10673 11 QNPHNNSPIVLVHGLFGSLDN-LGVLAR-----------D-------LVNDHDIIQVDMR-NHGLSPR--DPV---MNYP 65 (255)
T ss_pred CCCCCCCCEEEECCCCCchhH-HHHHHH-----------H-------HhhCCeEEEECCC-CCCCCCC--CCC---CCHH
Confidence 456778999999999998877 354432 1 2245799999998 6665542 222 3566
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecc
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNA 234 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng 234 (371)
+.++|+..+|..+ ...+++|+|+|.||..+..+|.+..++ ++++++.++
T Consensus 66 ~~~~d~~~~l~~l-------~~~~~~lvGhS~Gg~va~~~a~~~~~~---------v~~lvli~~ 114 (255)
T PRK10673 66 AMAQDLLDTLDAL-------QIEKATFIGHSMGGKAVMALTALAPDR---------IDKLVAIDI 114 (255)
T ss_pred HHHHHHHHHHHHc-------CCCceEEEEECHHHHHHHHHHHhCHhh---------cceEEEEec
Confidence 7888999888752 335799999999999998888654432 888888764
No 17
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.16 E-value=9.8e-06 Score=78.96 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=85.7
Q ss_pred ceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-Ccce
Q 017435 65 QQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANL 143 (371)
Q Consensus 65 ~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anl 143 (371)
+...++++..+ |..++|+.+........+|+||++||..+.++..+-.+. ..+.+ -.+|
T Consensus 31 ~~~~~~~~~~d--g~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~------------------~~L~~~Gy~V 90 (330)
T PLN02298 31 KGSKSFFTSPR--GLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTA------------------IFLAQMGFAC 90 (330)
T ss_pred ccccceEEcCC--CCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHH------------------HHHHhCCCEE
Confidence 34567777653 778888655432222356899999998543321111111 11333 3799
Q ss_pred EEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCc
Q 017435 144 LFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP 223 (371)
Q Consensus 144 l~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~ 223 (371)
+.+|.| |.|.|- ....+ ..+.+..++|+..+++..-. ..++...+++|+|+|.||..+-.+|.. ..
T Consensus 91 ~~~D~r-GhG~S~--~~~~~-~~~~~~~~~D~~~~i~~l~~-~~~~~~~~i~l~GhSmGG~ia~~~a~~---~p------ 156 (330)
T PLN02298 91 FALDLE-GHGRSE--GLRAY-VPNVDLVVEDCLSFFNSVKQ-REEFQGLPRFLYGESMGGAICLLIHLA---NP------ 156 (330)
T ss_pred EEecCC-CCCCCC--Ccccc-CCCHHHHHHHHHHHHHHHHh-cccCCCCCEEEEEecchhHHHHHHHhc---Cc------
Confidence 999999 555553 22222 12456678888888875433 223345589999999999877655532 11
Q ss_pred eeeeEEEeeccccCc
Q 017435 224 INLKGIMVGNAVTDN 238 (371)
Q Consensus 224 inLkGi~igng~~d~ 238 (371)
-.++|+++.+++.+.
T Consensus 157 ~~v~~lvl~~~~~~~ 171 (330)
T PLN02298 157 EGFDGAVLVAPMCKI 171 (330)
T ss_pred ccceeEEEecccccC
Confidence 238999999987654
No 18
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.11 E-value=9e-06 Score=80.84 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=82.2
Q ss_pred eEEEEEEee--cCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 80 ALFYWLTEA--THNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 80 ~lfy~f~es--~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
.-.||++++ +.+|++||+||++||| |.+.+.=|+.+.. ..+=+...+...+|.+|-..-. -.
T Consensus 105 ~~s~Wlvk~P~~~~pk~DpVlIYlHGG--------GY~l~~~p~qi~~-----L~~i~~~l~~~SILvLDYsLt~---~~ 168 (374)
T PF10340_consen 105 SQSYWLVKAPNRFKPKSDPVLIYLHGG--------GYFLGTTPSQIEF-----LLNIYKLLPEVSILVLDYSLTS---SD 168 (374)
T ss_pred cceEEEEeCCcccCCCCCcEEEEEcCC--------eeEecCCHHHHHH-----HHHHHHHcCCCeEEEEeccccc---cc
Confidence 456999985 3468889999999999 6666666655421 0011111223389999943221 00
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
..+..++ .+..++.+..+...+.. ...++.|.|+|-||+-+-.+.+++.+.+.. +-=|.+++.+||++
T Consensus 169 ~~~~~yP-----tQL~qlv~~Y~~Lv~~~---G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~----~~Pk~~iLISPWv~ 236 (374)
T PF10340_consen 169 EHGHKYP-----TQLRQLVATYDYLVESE---GNKNIILMGDSAGGNLALSFLQYLKKPNKL----PYPKSAILISPWVN 236 (374)
T ss_pred cCCCcCc-----hHHHHHHHHHHHHHhcc---CCCeEEEEecCccHHHHHHHHHHHhhcCCC----CCCceeEEECCCcC
Confidence 0122232 23333333334333222 346899999999999999999998765432 22378999999999
Q ss_pred ccc
Q 017435 238 NYY 240 (371)
Q Consensus 238 ~~~ 240 (371)
+..
T Consensus 237 l~~ 239 (374)
T PF10340_consen 237 LVP 239 (374)
T ss_pred CcC
Confidence 974
No 19
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.11 E-value=2e-05 Score=74.71 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=77.0
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
+..+.||..+. .+..|.||++||-++.+.. +..+.+ . ..+..+++.+|.| |-|.|
T Consensus 11 ~~~~~~~~~~~---~~~~~plvllHG~~~~~~~-w~~~~~-----------~-------L~~~~~vi~~Dl~-G~G~S-- 65 (276)
T TIGR02240 11 GQSIRTAVRPG---KEGLTPLLIFNGIGANLEL-VFPFIE-----------A-------LDPDLEVIAFDVP-GVGGS-- 65 (276)
T ss_pred CcEEEEEEecC---CCCCCcEEEEeCCCcchHH-HHHHHH-----------H-------hccCceEEEECCC-CCCCC--
Confidence 56788876432 2344778999997666666 343331 1 1245799999998 55554
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
..... ..+.+..++++.++|... .-.+++|+|+|+||..+-.+|.+-.+. ++++++.|+...
T Consensus 66 ~~~~~--~~~~~~~~~~~~~~i~~l-------~~~~~~LvG~S~GG~va~~~a~~~p~~---------v~~lvl~~~~~~ 127 (276)
T TIGR02240 66 STPRH--PYRFPGLAKLAARMLDYL-------DYGQVNAIGVSWGGALAQQFAHDYPER---------CKKLILAATAAG 127 (276)
T ss_pred CCCCC--cCcHHHHHHHHHHHHHHh-------CcCceEEEEECHHHHHHHHHHHHCHHH---------hhheEEeccCCc
Confidence 32221 124556677777777642 235799999999999888888654432 899999988754
No 20
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.10 E-value=1.9e-05 Score=75.50 Aligned_cols=120 Identities=19% Similarity=0.138 Sum_probs=81.2
Q ss_pred EEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecc
Q 017435 70 YVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETP 149 (371)
Q Consensus 70 yl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~P 149 (371)
+++++ +..++|.-. . +.|.||+++|.|+.+..+ -.+.+ .+.+...++-+|.|
T Consensus 11 ~~~~~---g~~i~y~~~----G--~g~~vvllHG~~~~~~~w-~~~~~------------------~L~~~~~via~D~~ 62 (295)
T PRK03592 11 RVEVL---GSRMAYIET----G--EGDPIVFLHGNPTSSYLW-RNIIP------------------HLAGLGRCLAPDLI 62 (295)
T ss_pred EEEEC---CEEEEEEEe----C--CCCEEEEECCCCCCHHHH-HHHHH------------------HHhhCCEEEEEcCC
Confidence 45554 566777622 1 347899999999888774 44331 12334589999988
Q ss_pred cccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEE
Q 017435 150 AGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGI 229 (371)
Q Consensus 150 vGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi 229 (371)
|-|.|- .... ..+....|+++..+++. +...+++|+|+|.||.++-.+|.+-.+. ++++
T Consensus 63 -G~G~S~--~~~~--~~~~~~~a~dl~~ll~~-------l~~~~~~lvGhS~Gg~ia~~~a~~~p~~---------v~~l 121 (295)
T PRK03592 63 -GMGASD--KPDI--DYTFADHARYLDAWFDA-------LGLDDVVLVGHDWGSALGFDWAARHPDR---------VRGI 121 (295)
T ss_pred -CCCCCC--CCCC--CCCHHHHHHHHHHHHHH-------hCCCCeEEEEECHHHHHHHHHHHhChhh---------eeEE
Confidence 666553 2221 13556677888777764 2346899999999999888888655443 8999
Q ss_pred EeeccccCc
Q 017435 230 MVGNAVTDN 238 (371)
Q Consensus 230 ~igng~~d~ 238 (371)
++.|+...+
T Consensus 122 il~~~~~~~ 130 (295)
T PRK03592 122 AFMEAIVRP 130 (295)
T ss_pred EEECCCCCC
Confidence 999986544
No 21
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=98.04 E-value=2.7e-05 Score=76.74 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-CcceEEeecccccccc
Q 017435 77 PGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANLLFLETPAGVGFS 155 (371)
Q Consensus 77 ~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anll~iD~PvGtGfS 155 (371)
.|..+||..+... +.+.+|+||++||..+.++..+-.+.+ .+.+ -.+++-+|.| |.|.|
T Consensus 70 ~g~~l~~~~~~p~-~~~~~~~iv~lHG~~~~~~~~~~~~~~------------------~l~~~g~~v~~~D~~-G~G~S 129 (349)
T PLN02385 70 RGVEIFSKSWLPE-NSRPKAAVCFCHGYGDTCTFFFEGIAR------------------KIASSGYGVFAMDYP-GFGLS 129 (349)
T ss_pred CCCEEEEEEEecC-CCCCCeEEEEECCCCCccchHHHHHHH------------------HHHhCCCEEEEecCC-CCCCC
Confidence 3678888765432 224569999999986655432111110 1222 3689999998 66665
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 156 YTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 156 y~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
-. ...+. .+-+..++|+.++++.. ...+++...+++|+|+|+||..+-.+|.+-. -.++|+++.+|.
T Consensus 130 ~~--~~~~~-~~~~~~~~dv~~~l~~l-~~~~~~~~~~~~LvGhSmGG~val~~a~~~p---------~~v~glVLi~p~ 196 (349)
T PLN02385 130 EG--LHGYI-PSFDDLVDDVIEHYSKI-KGNPEFRGLPSFLFGQSMGGAVALKVHLKQP---------NAWDGAILVAPM 196 (349)
T ss_pred CC--CCCCc-CCHHHHHHHHHHHHHHH-HhccccCCCCEEEEEeccchHHHHHHHHhCc---------chhhheeEeccc
Confidence 32 22221 24456788888777653 3344555668999999999987766654321 238999999886
Q ss_pred cC
Q 017435 236 TD 237 (371)
Q Consensus 236 ~d 237 (371)
..
T Consensus 197 ~~ 198 (349)
T PLN02385 197 CK 198 (349)
T ss_pred cc
Confidence 54
No 22
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.03 E-value=1.2e-05 Score=71.21 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=71.7
Q ss_pred EEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHH
Q 017435 98 VVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQ 177 (371)
Q Consensus 98 vlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~ 177 (371)
||+++|++|.+.. +..+.+ .+ .+-.+++.+|.| |.|.|-.... +...+-++.++++.+
T Consensus 1 vv~~hG~~~~~~~-~~~~~~-----------~l-------~~~~~v~~~d~~-G~G~s~~~~~--~~~~~~~~~~~~l~~ 58 (228)
T PF12697_consen 1 VVFLHGFGGSSES-WDPLAE-----------AL-------ARGYRVIAFDLP-GHGRSDPPPD--YSPYSIEDYAEDLAE 58 (228)
T ss_dssp EEEE-STTTTGGG-GHHHHH-----------HH-------HTTSEEEEEECT-TSTTSSSHSS--GSGGSHHHHHHHHHH
T ss_pred eEEECCCCCCHHH-HHHHHH-----------HH-------hCCCEEEEEecC-Cccccccccc--cCCcchhhhhhhhhh
Confidence 7899999999976 344442 12 145689999988 6776654332 112355667777777
Q ss_pred HHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 178 FLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 178 fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+|+. .. ..+++|+|+|+||..+-.+|.+..+ .++|+++.++.....
T Consensus 59 ~l~~----~~---~~~~~lvG~S~Gg~~a~~~a~~~p~---------~v~~~vl~~~~~~~~ 104 (228)
T PF12697_consen 59 LLDA----LG---IKKVILVGHSMGGMIALRLAARYPD---------RVKGLVLLSPPPPLP 104 (228)
T ss_dssp HHHH----TT---TSSEEEEEETHHHHHHHHHHHHSGG---------GEEEEEEESESSSHH
T ss_pred cccc----cc---ccccccccccccccccccccccccc---------ccccceeeccccccc
Confidence 7764 22 2689999999999988888865333 399999999988653
No 23
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.03 E-value=4e-05 Score=73.47 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=75.2
Q ss_pred eEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEE
Q 017435 66 QFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLF 145 (371)
Q Consensus 66 ~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~ 145 (371)
..+.+++++ +..++|-- . . ..|.||+++|.|..+.. +-.+.+ .+.+..+++.
T Consensus 14 ~~~~~~~~~---~~~i~y~~---~-G--~~~~iv~lHG~~~~~~~-~~~~~~------------------~l~~~~~vi~ 65 (286)
T PRK03204 14 FESRWFDSS---RGRIHYID---E-G--TGPPILLCHGNPTWSFL-YRDIIV------------------ALRDRFRCVA 65 (286)
T ss_pred ccceEEEcC---CcEEEEEE---C-C--CCCEEEEECCCCccHHH-HHHHHH------------------HHhCCcEEEE
Confidence 345678876 45676652 1 2 34789999999865544 332221 1233579999
Q ss_pred eecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCcee
Q 017435 146 LETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPIN 225 (371)
Q Consensus 146 iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~in 225 (371)
+|.| |.|.| ....+.. .+.+..++++..+++. . ...+++|+|+|+||..+-.+|..-. -.
T Consensus 66 ~D~~-G~G~S--~~~~~~~-~~~~~~~~~~~~~~~~----~---~~~~~~lvG~S~Gg~va~~~a~~~p---------~~ 125 (286)
T PRK03204 66 PDYL-GFGLS--ERPSGFG-YQIDEHARVIGEFVDH----L---GLDRYLSMGQDWGGPISMAVAVERA---------DR 125 (286)
T ss_pred ECCC-CCCCC--CCCCccc-cCHHHHHHHHHHHHHH----h---CCCCEEEEEECccHHHHHHHHHhCh---------hh
Confidence 9988 55555 3222211 2345556666655543 2 3457999999999986555554222 23
Q ss_pred eeEEEeecccc
Q 017435 226 LKGIMVGNAVT 236 (371)
Q Consensus 226 LkGi~igng~~ 236 (371)
+++++++++..
T Consensus 126 v~~lvl~~~~~ 136 (286)
T PRK03204 126 VRGVVLGNTWF 136 (286)
T ss_pred eeEEEEECccc
Confidence 89999988764
No 24
>PRK06489 hypothetical protein; Provisional
Probab=98.00 E-value=6e-05 Score=74.70 Aligned_cols=142 Identities=12% Similarity=0.066 Sum_probs=76.5
Q ss_pred cceEEeEEEecCCCCceEEEEEEeecC---CCCCCCeEEEeCCCCCchhhhhh-hhhhcCCeEEccCCCceeeCCCCCcC
Q 017435 64 FQQFSGYVPVNKVPGRALFYWLTEATH---NPLNKPLVVWLNGGPGCSSVAYG-ASEEIGPFRINKTASGLYLNKLSWNT 139 (371)
Q Consensus 64 ~~~~sGyl~v~~~~~~~lfy~f~es~~---~~~~~PlvlwlnGGPG~Ss~~~g-~~~e~GP~~~~~~~~~l~~n~~sW~~ 139 (371)
+...+|. .++ +..++|.-+.... ++.+.|.||.+||++|.+..+.. .+.+ ..+. ....--.+
T Consensus 39 ~~~~~~~-~~~---g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~---~l~~-------~~~~l~~~ 104 (360)
T PRK06489 39 FTFHSGE-TLP---ELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAG---ELFG-------PGQPLDAS 104 (360)
T ss_pred eeccCCC-CcC---CceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHH---HhcC-------CCCccccc
Confidence 5555674 333 5677776432100 12236889999999987655210 1100 0000 00001135
Q ss_pred CcceEEeecccccccccccCCC---CCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCe-EEEcccccccchHHHHHHHHH
Q 017435 140 EANLLFLETPAGVGFSYTNRSS---DLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREV-YLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~---~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~-yi~GESYgG~yvP~la~~i~~ 215 (371)
..+++.+|.| |.|.|-..... .....+.+..++++..++.+ ++.-.++ +|+|+|+||..+-.+|.+-.+
T Consensus 105 ~~~Via~Dl~-GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~------~lgi~~~~~lvG~SmGG~vAl~~A~~~P~ 177 (360)
T PRK06489 105 KYFIILPDGI-GHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTE------GLGVKHLRLILGTSMGGMHAWMWGEKYPD 177 (360)
T ss_pred CCEEEEeCCC-CCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHH------hcCCCceeEEEEECHHHHHHHHHHHhCch
Confidence 5799999998 66666321110 00012445556665554432 1222355 489999999888877765443
Q ss_pred hccCCCCceeeeEEEeeccc
Q 017435 216 HNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 216 ~n~~~~~~inLkGi~igng~ 235 (371)
. ++++++.++.
T Consensus 178 ~---------V~~LVLi~s~ 188 (360)
T PRK06489 178 F---------MDALMPMASQ 188 (360)
T ss_pred h---------hheeeeeccC
Confidence 3 7788877664
No 25
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.97 E-value=5.6e-05 Score=76.03 Aligned_cols=133 Identities=14% Similarity=0.054 Sum_probs=84.2
Q ss_pred CcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcc
Q 017435 63 SFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEAN 142 (371)
Q Consensus 63 ~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~an 142 (371)
+.++-+|+.... .+-.+||. +..+...|.||.+||.|+.+..+ -.+.+ . +.+..+
T Consensus 101 ~~~~~~~~~~~~--~~~~~~y~----~~G~~~~~~ivllHG~~~~~~~w-~~~~~-----------~-------L~~~~~ 155 (383)
T PLN03084 101 GLKMGAQSQASS--DLFRWFCV----ESGSNNNPPVLLIHGFPSQAYSY-RKVLP-----------V-------LSKNYH 155 (383)
T ss_pred cccccceeEEcC--CceEEEEE----ecCCCCCCeEEEECCCCCCHHHH-HHHHH-----------H-------HhcCCE
Confidence 456667766543 25566665 23444578999999999887763 43331 1 223479
Q ss_pred eEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 143 LLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 143 ll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
++.+|.| |.|+|.......-...+.+..++++..+++.. ...+++|+|+|+||..+-.+|..-.+
T Consensus 156 Via~Dlp-G~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l-------~~~~~~LvG~s~GG~ia~~~a~~~P~------- 220 (383)
T PLN03084 156 AIAFDWL-GFGFSDKPQPGYGFNYTLDEYVSSLESLIDEL-------KSDKVSLVVQGYFSPPVVKYASAHPD------- 220 (383)
T ss_pred EEEECCC-CCCCCCCCcccccccCCHHHHHHHHHHHHHHh-------CCCCceEEEECHHHHHHHHHHHhChH-------
Confidence 9999988 66666432211000135566777887777652 23579999999999755555543222
Q ss_pred ceeeeEEEeeccccC
Q 017435 223 PINLKGIMVGNAVTD 237 (371)
Q Consensus 223 ~inLkGi~igng~~d 237 (371)
.++++++.|+...
T Consensus 221 --~v~~lILi~~~~~ 233 (383)
T PLN03084 221 --KIKKLILLNPPLT 233 (383)
T ss_pred --hhcEEEEECCCCc
Confidence 3899999998654
No 26
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.89 E-value=4.7e-05 Score=68.36 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=65.8
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
+|+||+++|.+|.+.. +-.+.+ .+ .+-.+++-+|.| |.|.|-. .......+.++.+++
T Consensus 1 ~~~vv~~hG~~~~~~~-~~~~~~-----------~L-------~~~~~v~~~d~~-g~G~s~~--~~~~~~~~~~~~~~~ 58 (251)
T TIGR03695 1 KPVLVFLHGFLGSGAD-WQALIE-----------LL-------GPHFRCLAIDLP-GHGSSQS--PDEIERYDFEEAAQD 58 (251)
T ss_pred CCEEEEEcCCCCchhh-HHHHHH-----------Hh-------cccCeEEEEcCC-CCCCCCC--CCccChhhHHHHHHH
Confidence 4889999999888776 333221 11 133689999988 6665532 222111244445555
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+ +..+.+.. ..++++|+|+|+||..+..+|.+..+ .++++++.++..
T Consensus 59 ~---~~~~~~~~---~~~~~~l~G~S~Gg~ia~~~a~~~~~---------~v~~lil~~~~~ 105 (251)
T TIGR03695 59 I---LATLLDQL---GIEPFFLVGYSMGGRIALYYALQYPE---------RVQGLILESGSP 105 (251)
T ss_pred H---HHHHHHHc---CCCeEEEEEeccHHHHHHHHHHhCch---------heeeeEEecCCC
Confidence 2 22222333 35689999999999988888875432 388888887754
No 27
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=97.89 E-value=4e-05 Score=70.48 Aligned_cols=100 Identities=24% Similarity=0.229 Sum_probs=67.7
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
.|.||+++|.+|++..+ -.+.+ . . +..+++.+|.| |.|.|. .... .+-++.|++
T Consensus 2 ~p~vvllHG~~~~~~~w-~~~~~----------------~--l-~~~~vi~~D~~-G~G~S~--~~~~---~~~~~~~~~ 55 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDW-QPVGE----------------A--L-PDYPRLYIDLP-GHGGSA--AISV---DGFADVSRL 55 (242)
T ss_pred CCEEEEECCCCCChHHH-HHHHH----------------H--c-CCCCEEEecCC-CCCCCC--Cccc---cCHHHHHHH
Confidence 58899999999988773 43331 1 1 23799999988 555553 2221 245567777
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
+.++|.. +...+++++|+|+||..+-.+|.+..+ -.++++++.++.
T Consensus 56 l~~~l~~-------~~~~~~~lvG~S~Gg~va~~~a~~~~~--------~~v~~lvl~~~~ 101 (242)
T PRK11126 56 LSQTLQS-------YNILPYWLVGYSLGGRIAMYYACQGLA--------GGLCGLIVEGGN 101 (242)
T ss_pred HHHHHHH-------cCCCCeEEEEECHHHHHHHHHHHhCCc--------ccccEEEEeCCC
Confidence 7777763 235689999999999888777765321 117888887764
No 28
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.81 E-value=0.00013 Score=73.73 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=82.7
Q ss_pred CCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeeccccccccc
Q 017435 77 PGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSY 156 (371)
Q Consensus 77 ~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy 156 (371)
.+..+|++.+.... .+.+|+||++||.++.+.. +-.+.+ .+. .+-.+++-+|.| |-|.|
T Consensus 119 ~~~~l~~~~~~p~~-~~~~~~Vl~lHG~~~~~~~-~~~~a~-----------~L~------~~Gy~V~~~D~r-GhG~S- 177 (395)
T PLN02652 119 RRNALFCRSWAPAA-GEMRGILIIIHGLNEHSGR-YLHFAK-----------QLT------SCGFGVYAMDWI-GHGGS- 177 (395)
T ss_pred CCCEEEEEEecCCC-CCCceEEEEECCchHHHHH-HHHHHH-----------HHH------HCCCEEEEeCCC-CCCCC-
Confidence 35678888776532 3457899999999877654 233221 011 123589999988 55544
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 157 TNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
.....+ ..+.+..++|+..+++..-..+| ..+++|+|+|+||..+..+|. ..+ .+-.++|+++.+|++
T Consensus 178 -~~~~~~-~~~~~~~~~Dl~~~l~~l~~~~~---~~~i~lvGhSmGG~ial~~a~----~p~---~~~~v~glVL~sP~l 245 (395)
T PLN02652 178 -DGLHGY-VPSLDYVVEDTEAFLEKIRSENP---GVPCFLFGHSTGGAVVLKAAS----YPS---IEDKLEGIVLTSPAL 245 (395)
T ss_pred -CCCCCC-CcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHHHHHHHHHHh----ccC---cccccceEEEECccc
Confidence 322222 13455677888888887666665 458999999999987665442 111 012489999999987
Q ss_pred Cc
Q 017435 237 DN 238 (371)
Q Consensus 237 d~ 238 (371)
+.
T Consensus 246 ~~ 247 (395)
T PLN02652 246 RV 247 (395)
T ss_pred cc
Confidence 54
No 29
>PRK10749 lysophospholipase L2; Provisional
Probab=97.80 E-value=0.00012 Score=71.64 Aligned_cols=126 Identities=16% Similarity=0.096 Sum_probs=79.2
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
|..++|+.+... +.+|+||.++|-.+.+.. |..+. +. +. .+-.+++-+|.| |.|.|-.
T Consensus 40 g~~l~~~~~~~~---~~~~~vll~HG~~~~~~~-y~~~~---~~--------l~------~~g~~v~~~D~~-G~G~S~~ 97 (330)
T PRK10749 40 DIPIRFVRFRAP---HHDRVVVICPGRIESYVK-YAELA---YD--------LF------HLGYDVLIIDHR-GQGRSGR 97 (330)
T ss_pred CCEEEEEEccCC---CCCcEEEEECCccchHHH-HHHHH---HH--------HH------HCCCeEEEEcCC-CCCCCCC
Confidence 667898876532 456899999998665544 22222 00 10 123589999988 6676642
Q ss_pred cCCCCC--CCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 158 NRSSDL--LDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 158 ~~~~~~--~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
...... ...+-+..++|+..+++.....++ ..+++++|+|+||..+-.+|.. .. -.++|+++.+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~l~GhSmGG~ia~~~a~~---~p------~~v~~lvl~~p~ 165 (330)
T PRK10749 98 LLDDPHRGHVERFNDYVDDLAAFWQQEIQPGP---YRKRYALAHSMGGAILTLFLQR---HP------GVFDAIALCAPM 165 (330)
T ss_pred CCCCCCcCccccHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEcHHHHHHHHHHHh---CC------CCcceEEEECch
Confidence 211100 012445677788888876554443 5689999999999876666643 21 237999999987
Q ss_pred cC
Q 017435 236 TD 237 (371)
Q Consensus 236 ~d 237 (371)
..
T Consensus 166 ~~ 167 (330)
T PRK10749 166 FG 167 (330)
T ss_pred hc
Confidence 64
No 30
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=97.79 E-value=6.4e-05 Score=70.72 Aligned_cols=107 Identities=15% Similarity=0.082 Sum_probs=63.8
Q ss_pred CCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHH
Q 017435 94 NKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAK 173 (371)
Q Consensus 94 ~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~ 173 (371)
+.|.||+++|.++.+..+ ..+.. .+. .-..+..+++.+|.| |.|.|-... .+. ......++
T Consensus 29 ~~~~ivllHG~~~~~~~~-~~~~~-----------~~~---~l~~~~~~vi~~D~~-G~G~S~~~~-~~~--~~~~~~~~ 89 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGW-SNYYR-----------NIG---PFVDAGYRVILKDSP-GFNKSDAVV-MDE--QRGLVNAR 89 (282)
T ss_pred CCCeEEEECCCCCchhhH-HHHHH-----------HHH---HHHhCCCEEEEECCC-CCCCCCCCc-Ccc--cccchhHH
Confidence 347799999986655442 21110 000 001234799999988 666553211 111 11223466
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 174 DSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 174 ~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
++.++++. +..++++++|+|+||..+-.+|.+-.+. ++++++.+|.
T Consensus 90 ~l~~~l~~-------l~~~~~~lvG~S~Gg~ia~~~a~~~p~~---------v~~lvl~~~~ 135 (282)
T TIGR03343 90 AVKGLMDA-------LDIEKAHLVGNSMGGATALNFALEYPDR---------IGKLILMGPG 135 (282)
T ss_pred HHHHHHHH-------cCCCCeeEEEECchHHHHHHHHHhChHh---------hceEEEECCC
Confidence 66666653 2356899999999999999888755443 7788877764
No 31
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.78 E-value=0.0002 Score=71.12 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=78.2
Q ss_pred eEEeEEEecCCCCc-eEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceE
Q 017435 66 QFSGYVPVNKVPGR-ALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLL 144 (371)
Q Consensus 66 ~~sGyl~v~~~~~~-~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll 144 (371)
....++..+ +. +++|.-..+.....+.|.||.|||.++.+..+ ..+.+ ...+..+++
T Consensus 61 ~~~~~~~~~---g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w-~~~~~------------------~L~~~~~vi 118 (360)
T PLN02679 61 ERCKKWKWK---GEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHW-RRNIG------------------VLAKNYTVY 118 (360)
T ss_pred ccCceEEEC---CceeEEEEEecCcccCCCCCeEEEECCCCCCHHHH-HHHHH------------------HHhcCCEEE
Confidence 345566665 34 67776332110111447899999999888773 43331 122346899
Q ss_pred EeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCce
Q 017435 145 FLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPI 224 (371)
Q Consensus 145 ~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~i 224 (371)
.+|.| |-|.| ....+. ..+.+..++++.++|.. +...+++|+|+|+||..+-.+|..- .. -
T Consensus 119 a~Dl~-G~G~S--~~~~~~-~~~~~~~a~~l~~~l~~-------l~~~~~~lvGhS~Gg~ia~~~a~~~--~P------~ 179 (360)
T PLN02679 119 AIDLL-GFGAS--DKPPGF-SYTMETWAELILDFLEE-------VVQKPTVLIGNSVGSLACVIAASES--TR------D 179 (360)
T ss_pred EECCC-CCCCC--CCCCCc-cccHHHHHHHHHHHHHH-------hcCCCeEEEEECHHHHHHHHHHHhc--Ch------h
Confidence 99999 44544 332221 13556677888777764 2345899999999996654444321 11 1
Q ss_pred eeeEEEeecccc
Q 017435 225 NLKGIMVGNAVT 236 (371)
Q Consensus 225 nLkGi~igng~~ 236 (371)
.++|+++.|+..
T Consensus 180 rV~~LVLi~~~~ 191 (360)
T PLN02679 180 LVRGLVLLNCAG 191 (360)
T ss_pred hcCEEEEECCcc
Confidence 288999888753
No 32
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=97.74 E-value=0.00022 Score=72.06 Aligned_cols=119 Identities=12% Similarity=0.093 Sum_probs=71.9
Q ss_pred eEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccC
Q 017435 80 ALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 80 ~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~ 159 (371)
.+.+..++. +...|.||+++|.++.+... .... ..+.+..+++.+|.| |.|-| ..
T Consensus 93 ~~~~~~~~~---~~~~p~vvllHG~~~~~~~~-~~~~------------------~~L~~~~~vi~~D~r-G~G~S--~~ 147 (402)
T PLN02894 93 FINTVTFDS---KEDAPTLVMVHGYGASQGFF-FRNF------------------DALASRFRVIAIDQL-GWGGS--SR 147 (402)
T ss_pred eEEEEEecC---CCCCCEEEEECCCCcchhHH-HHHH------------------HHHHhCCEEEEECCC-CCCCC--CC
Confidence 444444432 24679999999998766652 2211 012234789999988 55544 32
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 160 SSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 160 ~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
.. +...+.++..+.+.+.+..|.+.. ...+++|+|+|+||..+-.+|.+-. -.++++++.++..
T Consensus 148 ~~-~~~~~~~~~~~~~~~~i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p---------~~v~~lvl~~p~~ 211 (402)
T PLN02894 148 PD-FTCKSTEETEAWFIDSFEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHP---------EHVQHLILVGPAG 211 (402)
T ss_pred CC-cccccHHHHHHHHHHHHHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCc---------hhhcEEEEECCcc
Confidence 21 211122334444566666666543 2357999999999987776665432 2388988888764
No 33
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=97.74 E-value=9.7e-05 Score=66.56 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHH
Q 017435 92 PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRT 171 (371)
Q Consensus 92 ~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~ 171 (371)
+..+|++|+++|-++.+.. +..+.+. + .+..+++.+|.| |.|.|- .... ..+.++.
T Consensus 10 ~~~~~~li~~hg~~~~~~~-~~~~~~~-----------l-------~~~~~v~~~d~~-G~G~s~--~~~~--~~~~~~~ 65 (251)
T TIGR02427 10 ADGAPVLVFINSLGTDLRM-WDPVLPA-----------L-------TPDFRVLRYDKR-GHGLSD--APEG--PYSIEDL 65 (251)
T ss_pred CCCCCeEEEEcCcccchhh-HHHHHHH-----------h-------hcccEEEEecCC-CCCCCC--CCCC--CCCHHHH
Confidence 3367999999986555555 3333321 1 234699999998 666553 2211 1356677
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecc
Q 017435 172 AKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNA 234 (371)
Q Consensus 172 a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng 234 (371)
++++.++++.+ ...+++|+|+|+||..+-.+|.+-.+. ++++++.++
T Consensus 66 ~~~~~~~i~~~-------~~~~v~liG~S~Gg~~a~~~a~~~p~~---------v~~li~~~~ 112 (251)
T TIGR02427 66 ADDVLALLDHL-------GIERAVFCGLSLGGLIAQGLAARRPDR---------VRALVLSNT 112 (251)
T ss_pred HHHHHHHHHHh-------CCCceEEEEeCchHHHHHHHHHHCHHH---------hHHHhhccC
Confidence 77887777642 245799999999999888887653322 666666554
No 34
>PLN02578 hydrolase
Probab=97.74 E-value=0.00032 Score=69.44 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=73.1
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
+.+++|.-. . +.|.||.++|-++.+..+ ....+ . +.+..+++.+|.| |.|.|-
T Consensus 75 ~~~i~Y~~~----g--~g~~vvliHG~~~~~~~w-~~~~~-----------~-------l~~~~~v~~~D~~-G~G~S~- 127 (354)
T PLN02578 75 GHKIHYVVQ----G--EGLPIVLIHGFGASAFHW-RYNIP-----------E-------LAKKYKVYALDLL-GFGWSD- 127 (354)
T ss_pred CEEEEEEEc----C--CCCeEEEECCCCCCHHHH-HHHHH-----------H-------HhcCCEEEEECCC-CCCCCC-
Confidence 567777632 1 235578999876665552 32221 1 2235789999999 555553
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.... ..+.+..++++.+|++.. ...+++|+|+|+||..+..+|.+-.+. ++++++.|+.
T Consensus 128 -~~~~--~~~~~~~a~~l~~~i~~~-------~~~~~~lvG~S~Gg~ia~~~A~~~p~~---------v~~lvLv~~~ 186 (354)
T PLN02578 128 -KALI--EYDAMVWRDQVADFVKEV-------VKEPAVLVGNSLGGFTALSTAVGYPEL---------VAGVALLNSA 186 (354)
T ss_pred -Cccc--ccCHHHHHHHHHHHHHHh-------ccCCeEEEEECHHHHHHHHHHHhChHh---------cceEEEECCC
Confidence 2211 135566677888887753 246899999999999888888765443 8899988764
No 35
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=97.69 E-value=0.00027 Score=73.17 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=81.6
Q ss_pred cceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhh-hhhcCCeEEccCCCceeeCCCCCcCCcc
Q 017435 64 FQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGA-SEEIGPFRINKTASGLYLNKLSWNTEAN 142 (371)
Q Consensus 64 ~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~-~~e~GP~~~~~~~~~l~~n~~sW~~~an 142 (371)
.+.-.-|++.+ +..+||+...... ...+|.||++||.+|.+.++ .. +.+ .+.. .+.+...
T Consensus 174 ~~~~~~~~~~~---~~~l~~~~~gp~~-~~~k~~VVLlHG~~~s~~~W-~~~~~~-----------~L~~---~~~~~yr 234 (481)
T PLN03087 174 CKFCTSWLSSS---NESLFVHVQQPKD-NKAKEDVLFIHGFISSSAFW-TETLFP-----------NFSD---AAKSTYR 234 (481)
T ss_pred cceeeeeEeeC---CeEEEEEEecCCC-CCCCCeEEEECCCCccHHHH-HHHHHH-----------HHHH---HhhCCCE
Confidence 44555778766 4688888654332 22347899999999988873 32 110 0110 1345678
Q ss_pred eEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 143 LLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 143 ll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
++.+|.| ||..+....+. ..+.++.++++. ..+.+. +...+++|+|+|+||..+-.+|.+-.+.
T Consensus 235 Via~Dl~---G~G~S~~p~~~-~ytl~~~a~~l~---~~ll~~---lg~~k~~LVGhSmGG~iAl~~A~~~Pe~------ 298 (481)
T PLN03087 235 LFAVDLL---GFGRSPKPADS-LYTLREHLEMIE---RSVLER---YKVKSFHIVAHSLGCILALALAVKHPGA------ 298 (481)
T ss_pred EEEECCC---CCCCCcCCCCC-cCCHHHHHHHHH---HHHHHH---cCCCCEEEEEECHHHHHHHHHHHhChHh------
Confidence 9999999 44443332211 124445555553 123333 2356899999999999888888754432
Q ss_pred ceeeeEEEeeccc
Q 017435 223 PINLKGIMVGNAV 235 (371)
Q Consensus 223 ~inLkGi~igng~ 235 (371)
++++++.++.
T Consensus 299 ---V~~LVLi~~~ 308 (481)
T PLN03087 299 ---VKSLTLLAPP 308 (481)
T ss_pred ---ccEEEEECCC
Confidence 7888888763
No 36
>PRK10349 carboxylesterase BioH; Provisional
Probab=97.65 E-value=0.00014 Score=67.87 Aligned_cols=95 Identities=19% Similarity=0.138 Sum_probs=63.0
Q ss_pred CeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHH
Q 017435 96 PLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDS 175 (371)
Q Consensus 96 PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~ 175 (371)
|.||+++|.++++..+ -.+.+ .+.+..+++.+|.| |.|.|-. ... .+.++.++++
T Consensus 14 ~~ivllHG~~~~~~~w-~~~~~------------------~L~~~~~vi~~Dl~-G~G~S~~--~~~---~~~~~~~~~l 68 (256)
T PRK10349 14 VHLVLLHGWGLNAEVW-RCIDE------------------ELSSHFTLHLVDLP-GFGRSRG--FGA---LSLADMAEAV 68 (256)
T ss_pred CeEEEECCCCCChhHH-HHHHH------------------HHhcCCEEEEecCC-CCCCCCC--CCC---CCHHHHHHHH
Confidence 5699999988888773 33331 23356899999988 6666532 222 2444455544
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 176 LQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 176 ~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.+ +...+++++|+|+||..+..+|.+-. -.++++++.|+.
T Consensus 69 ~~-----------~~~~~~~lvGhS~Gg~ia~~~a~~~p---------~~v~~lili~~~ 108 (256)
T PRK10349 69 LQ-----------QAPDKAIWLGWSLGGLVASQIALTHP---------ERVQALVTVASS 108 (256)
T ss_pred Hh-----------cCCCCeEEEEECHHHHHHHHHHHhCh---------HhhheEEEecCc
Confidence 32 12357999999999998888876432 238889888763
No 37
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=97.62 E-value=0.00029 Score=67.23 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=68.0
Q ss_pred CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHH
Q 017435 93 LNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTA 172 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a 172 (371)
.++|.||+++|..+.++. |..+.+ .|.. +-.+++-+|.| |.|-|...... . .+.+..+
T Consensus 16 ~~~p~vvliHG~~~~~~~-w~~~~~-----------~L~~------~g~~vi~~dl~-g~G~s~~~~~~-~--~~~~~~~ 73 (273)
T PLN02211 16 RQPPHFVLIHGISGGSWC-WYKIRC-----------LMEN------SGYKVTCIDLK-SAGIDQSDADS-V--TTFDEYN 73 (273)
T ss_pred CCCCeEEEECCCCCCcCc-HHHHHH-----------HHHh------CCCEEEEeccc-CCCCCCCCccc-C--CCHHHHH
Confidence 667999999998777766 333321 1111 13589999998 66655322211 1 3555666
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+++.++|+. .. ...+++|+|+||||..+-.++....+ .++++++.++..
T Consensus 74 ~~l~~~i~~----l~--~~~~v~lvGhS~GG~v~~~~a~~~p~---------~v~~lv~~~~~~ 122 (273)
T PLN02211 74 KPLIDFLSS----LP--ENEKVILVGHSAGGLSVTQAIHRFPK---------KICLAVYVAATM 122 (273)
T ss_pred HHHHHHHHh----cC--CCCCEEEEEECchHHHHHHHHHhChh---------heeEEEEecccc
Confidence 666666653 22 14689999999999977777754332 277887776643
No 38
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00026 Score=75.63 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=84.7
Q ss_pred CCceEEEEEEeecC-CCCC-CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCC-CcCCcceEEeecccccc
Q 017435 77 PGRALFYWLTEATH-NPLN-KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLS-WNTEANLLFLETPAGVG 153 (371)
Q Consensus 77 ~~~~lfy~f~es~~-~~~~-~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~s-W~~~anll~iD~PvGtG 153 (371)
.|..+..|++...+ ++.. -|+||+++||| +++ +|. . ...+... +.+-+.|++++-.--+|
T Consensus 374 dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP--~~~-~~~-------~-------~~~~~q~~~~~G~~V~~~n~RGS~G 436 (620)
T COG1506 374 DGETIHGWLYKPPGFDPRKKYPLIVYIHGGP--SAQ-VGY-------S-------FNPEIQVLASAGYAVLAPNYRGSTG 436 (620)
T ss_pred CCCEEEEEEecCCCCCCCCCCCEEEEeCCCC--ccc-ccc-------c-------cchhhHHHhcCCeEEEEeCCCCCCc
Confidence 36789999887654 3322 49999999999 444 231 0 1111112 34457888888444445
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeec
Q 017435 154 FSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGN 233 (371)
Q Consensus 154 fSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~ign 233 (371)
|+..=......... ....+|+..++. |+.+.|......+.|+|.||||- ++..++.+.. .+|..+...
T Consensus 437 yG~~F~~~~~~~~g-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGy----mtl~~~~~~~------~f~a~~~~~ 504 (620)
T COG1506 437 YGREFADAIRGDWG-GVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGY----MTLLAATKTP------RFKAAVAVA 504 (620)
T ss_pred cHHHHHHhhhhccC-CccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHH----HHHHHHhcCc------hhheEEecc
Confidence 54321111110111 235778888888 88999988888899999999995 4444444432 278888888
Q ss_pred cccCccc
Q 017435 234 AVTDNYY 240 (371)
Q Consensus 234 g~~d~~~ 240 (371)
|.++...
T Consensus 505 ~~~~~~~ 511 (620)
T COG1506 505 GGVDWLL 511 (620)
T ss_pred Ccchhhh
Confidence 8776654
No 39
>PLN02965 Probable pheophorbidase
Probab=97.58 E-value=0.00024 Score=66.55 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=65.3
Q ss_pred EEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHH
Q 017435 98 VVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQ 177 (371)
Q Consensus 98 vlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~ 177 (371)
||++||.++.+..+ -...+ .|. .+...++-+|.| |.|.|-...... .+.+..|+|+.+
T Consensus 6 vvllHG~~~~~~~w-~~~~~-----------~L~------~~~~~via~Dl~-G~G~S~~~~~~~---~~~~~~a~dl~~ 63 (255)
T PLN02965 6 FVFVHGASHGAWCW-YKLAT-----------LLD------AAGFKSTCVDLT-GAGISLTDSNTV---SSSDQYNRPLFA 63 (255)
T ss_pred EEEECCCCCCcCcH-HHHHH-----------HHh------hCCceEEEecCC-cCCCCCCCcccc---CCHHHHHHHHHH
Confidence 88999988766553 32221 111 223689999988 666653221111 355667788887
Q ss_pred HHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 178 FLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 178 fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
+|.. +.. ++++|+|+|+||..+..+|.+..+. ++++++.|+.
T Consensus 64 ~l~~-------l~~~~~~~lvGhSmGG~ia~~~a~~~p~~---------v~~lvl~~~~ 106 (255)
T PLN02965 64 LLSD-------LPPDHKVILVGHSIGGGSVTEALCKFTDK---------ISMAIYVAAA 106 (255)
T ss_pred HHHh-------cCCCCCEEEEecCcchHHHHHHHHhCchh---------eeEEEEEccc
Confidence 7763 222 5899999999998888888644332 7888888775
No 40
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=97.57 E-value=0.00042 Score=67.99 Aligned_cols=114 Identities=20% Similarity=0.184 Sum_probs=72.7
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
+..++|. +..+.+.|.||++||.+|.+.. +..+.+ .+ .+..+++-+|.| |.|.|-.
T Consensus 118 ~~~i~~~----~~g~~~~~~vl~~HG~~~~~~~-~~~~~~-----------~l-------~~~~~v~~~d~~-g~G~s~~ 173 (371)
T PRK14875 118 GRTVRYL----RLGEGDGTPVVLIHGFGGDLNN-WLFNHA-----------AL-------AAGRPVIALDLP-GHGASSK 173 (371)
T ss_pred CcEEEEe----cccCCCCCeEEEECCCCCccch-HHHHHH-----------HH-------hcCCEEEEEcCC-CCCCCCC
Confidence 3456654 2233456899999999888876 344432 11 123689999988 6666632
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
... ..+.+..++++..+++. +...+++|+|+|+||..+..+|..-. -.++++++.++.
T Consensus 174 ~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~lvG~S~Gg~~a~~~a~~~~---------~~v~~lv~~~~~ 231 (371)
T PRK14875 174 AVG----AGSLDELAAAVLAFLDA-------LGIERAHLVGHSMGGAVALRLAARAP---------QRVASLTLIAPA 231 (371)
T ss_pred CCC----CCCHHHHHHHHHHHHHh-------cCCccEEEEeechHHHHHHHHHHhCc---------hheeEEEEECcC
Confidence 111 13455666666666643 23457999999999998888876522 237788877664
No 41
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=97.54 E-value=0.00045 Score=67.93 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=53.3
Q ss_pred CCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHhc
Q 017435 139 TEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIHN 217 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~n 217 (371)
+...++.+|.| |++.+.. .. .+....|+++..+|+. +.- +.+.|+|+|+||..+-.+|.+-.+.
T Consensus 98 ~~~~Vi~~Dl~---G~g~s~~-~~---~~~~~~a~dl~~ll~~-------l~l~~~~~lvG~SmGG~vA~~~A~~~P~~- 162 (343)
T PRK08775 98 ARFRLLAFDFI---GADGSLD-VP---IDTADQADAIALLLDA-------LGIARLHAFVGYSYGALVGLQFASRHPAR- 162 (343)
T ss_pred cccEEEEEeCC---CCCCCCC-CC---CCHHHHHHHHHHHHHH-------cCCCcceEEEEECHHHHHHHHHHHHChHh-
Confidence 56799999999 5543322 22 2445678888888874 222 3467999999999888888765543
Q ss_pred cCCCCceeeeEEEeeccccC
Q 017435 218 SKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 218 ~~~~~~inLkGi~igng~~d 237 (371)
++++++.++...
T Consensus 163 --------V~~LvLi~s~~~ 174 (343)
T PRK08775 163 --------VRTLVVVSGAHR 174 (343)
T ss_pred --------hheEEEECcccc
Confidence 889999887543
No 42
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.54 E-value=0.00031 Score=64.33 Aligned_cols=117 Identities=16% Similarity=0.100 Sum_probs=59.6
Q ss_pred CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCC-CCC---CC
Q 017435 92 PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSD-LLD---TG 167 (371)
Q Consensus 92 ~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~-~~~---~~ 167 (371)
.+..|+||+|||+++..+.. ..-.+ +. .+. + ..-..+|..|.| |.|.+ ...-+ +.. ..
T Consensus 10 ~~~~P~vv~lHG~~~~~~~~-~~~~~---~~------~~a-~----~~g~~Vv~Pd~~-g~~~~--~~~~~~~~~~~~~~ 71 (212)
T TIGR01840 10 TGPRALVLALHGCGQTASAY-VIDWG---WK------AAA-D----RYGFVLVAPEQT-SYNSS--NNCWDWFFTHHRAR 71 (212)
T ss_pred CCCCCEEEEeCCCCCCHHHH-hhhcC---hH------HHH-H----hCCeEEEecCCc-Ccccc--CCCCCCCCccccCC
Confidence 45689999999999876641 21000 00 000 0 012467777766 22211 11000 000 00
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
......++..++....++++ ....+++|+|+|.||..+-.+|..-. -.+.++++..|..
T Consensus 72 ~~~~~~~~~~~i~~~~~~~~-id~~~i~l~G~S~Gg~~a~~~a~~~p---------~~~~~~~~~~g~~ 130 (212)
T TIGR01840 72 GTGEVESLHQLIDAVKANYS-IDPNRVYVTGLSAGGGMTAVLGCTYP---------DVFAGGASNAGLP 130 (212)
T ss_pred CCccHHHHHHHHHHHHHhcC-cChhheEEEEECHHHHHHHHHHHhCc---------hhheEEEeecCCc
Confidence 11223444445544444443 34467999999999987666654321 1267777777653
No 43
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=97.54 E-value=0.00041 Score=70.53 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=73.3
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCch--hhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCS--SVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFS 155 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~S--s~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfS 155 (371)
+..+.-|++... .....|+|| +.||.++. .. +..+.+ .+. .+=.++|-+|.| |.|.|
T Consensus 178 g~~l~g~l~~P~-~~~~~P~Vl-i~gG~~~~~~~~-~~~~~~-----------~La------~~Gy~vl~~D~p-G~G~s 236 (414)
T PRK05077 178 GGPITGFLHLPK-GDGPFPTVL-VCGGLDSLQTDY-YRLFRD-----------YLA------PRGIAMLTIDMP-SVGFS 236 (414)
T ss_pred CcEEEEEEEECC-CCCCccEEE-EeCCcccchhhh-HHHHHH-----------HHH------hCCCEEEEECCC-CCCCC
Confidence 335665655433 335578877 55676653 22 122210 011 112689999999 88877
Q ss_pred cccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 156 YTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 156 y~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
-... . ..+ .......+..|+...|.....++.|+|+|+||.+++.+|..-. -.++++++.+|.
T Consensus 237 ~~~~---~--~~d---~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p---------~ri~a~V~~~~~ 299 (414)
T PRK05077 237 SKWK---L--TQD---SSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEP---------PRLKAVACLGPV 299 (414)
T ss_pred CCCC---c--ccc---HHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCC---------cCceEEEEECCc
Confidence 4311 1 011 1122234445666677766778999999999999998885321 138899988887
Q ss_pred cCc
Q 017435 236 TDN 238 (371)
Q Consensus 236 ~d~ 238 (371)
++.
T Consensus 300 ~~~ 302 (414)
T PRK05077 300 VHT 302 (414)
T ss_pred cch
Confidence 653
No 44
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.52 E-value=0.00023 Score=64.00 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
+|.||+++|.++.+.. +-.+.+ ...+..+++.+|.| |.|.|- .... .+.++.+++
T Consensus 4 ~~~iv~~HG~~~~~~~-~~~~~~------------------~l~~~~~vi~~d~~-G~G~s~--~~~~---~~~~~~~~~ 58 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEV-FRCLDE------------------ELSAHFTLHLVDLP-GHGRSR--GFGP---LSLADAAEA 58 (245)
T ss_pred CceEEEEcCCCCchhh-HHHHHH------------------hhccCeEEEEecCC-cCccCC--CCCC---cCHHHHHHH
Confidence 4789999998776666 333321 11234789999988 555542 2221 233444444
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+.+.+ ..+++++|+|+||..+..+|.+-.+. ++++++.++..
T Consensus 59 ~~~~~-----------~~~~~lvG~S~Gg~~a~~~a~~~p~~---------v~~~il~~~~~ 100 (245)
T TIGR01738 59 IAAQA-----------PDPAIWLGWSLGGLVALHIAATHPDR---------VRALVTVASSP 100 (245)
T ss_pred HHHhC-----------CCCeEEEEEcHHHHHHHHHHHHCHHh---------hheeeEecCCc
Confidence 43221 25899999999999888887654332 78888877643
No 45
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=97.44 E-value=0.0006 Score=65.30 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=75.7
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCc---hh-hhhhhhhhcCCeEEccCCCceeeCCCCCc-CCcceEEeeccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGC---SS-VAYGASEEIGPFRINKTASGLYLNKLSWN-TEANLLFLETPAGV 152 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~---Ss-~~~g~~~e~GP~~~~~~~~~l~~n~~sW~-~~anll~iD~PvGt 152 (371)
..++|.|+++.... ..+|+||++||-.+- +. + +..+. ..+. .-.+++-+|.| |.
T Consensus 9 ~g~~~~~~~~p~~~-~~~~~VlllHG~g~~~~~~~~~-~~~la------------------~~La~~Gy~Vl~~Dl~-G~ 67 (266)
T TIGR03101 9 HGFRFCLYHPPVAV-GPRGVVIYLPPFAEEMNKSRRM-VALQA------------------RAFAAGGFGVLQIDLY-GC 67 (266)
T ss_pred CCcEEEEEecCCCC-CCceEEEEECCCcccccchhHH-HHHHH------------------HHHHHCCCEEEEECCC-CC
Confidence 45688888876432 336899999985331 11 1 11111 0111 23689999988 66
Q ss_pred ccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEee
Q 017435 153 GFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVG 232 (371)
Q Consensus 153 GfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~ig 232 (371)
|.|-.... + .+....++|+..+++ |++... ..+++|+|+|.||..+..+|.+.. -.++++++-
T Consensus 68 G~S~g~~~-~---~~~~~~~~Dv~~ai~-~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p---------~~v~~lVL~ 130 (266)
T TIGR03101 68 GDSAGDFA-A---ARWDVWKEDVAAAYR-WLIEQG---HPPVTLWGLRLGALLALDAANPLA---------AKCNRLVLW 130 (266)
T ss_pred CCCCCccc-c---CCHHHHHHHHHHHHH-HHHhcC---CCCEEEEEECHHHHHHHHHHHhCc---------cccceEEEe
Confidence 66543211 1 233344566555433 444332 458999999999998887775432 238899999
Q ss_pred ccccCccc
Q 017435 233 NAVTDNYY 240 (371)
Q Consensus 233 ng~~d~~~ 240 (371)
+|.++...
T Consensus 131 ~P~~~g~~ 138 (266)
T TIGR03101 131 QPVVSGKQ 138 (266)
T ss_pred ccccchHH
Confidence 99887654
No 46
>PLN02511 hydrolase
Probab=97.35 E-value=0.00094 Score=67.21 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred EEeEEEecCCCCceEEEEEEee--cCCCCCCCeEEEeCCCCCchhhhhh-hhhhcCCeEEccCCCceeeCCCCCcCCcce
Q 017435 67 FSGYVPVNKVPGRALFYWLTEA--THNPLNKPLVVWLNGGPGCSSVAYG-ASEEIGPFRINKTASGLYLNKLSWNTEANL 143 (371)
Q Consensus 67 ~sGyl~v~~~~~~~lfy~f~es--~~~~~~~PlvlwlnGGPG~Ss~~~g-~~~e~GP~~~~~~~~~l~~n~~sW~~~anl 143 (371)
..-+++..+ |..+.+..+.. ...+.++|+||.++|..|+|...|- .+.. .-..+-.++
T Consensus 72 ~re~l~~~D--G~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~-----------------~~~~~g~~v 132 (388)
T PLN02511 72 RRECLRTPD--GGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLL-----------------RARSKGWRV 132 (388)
T ss_pred eEEEEECCC--CCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHH-----------------HHHHCCCEE
Confidence 445677654 55565543332 2245678999999999998742111 1110 001234589
Q ss_pred EEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCc
Q 017435 144 LFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP 223 (371)
Q Consensus 144 l~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~ 223 (371)
+-+|.| |.|-|-.... .+ .....++|+..+++..-.++| +.+++++|+|.||..+-.++.+-.+ .
T Consensus 133 v~~d~r-G~G~s~~~~~-~~---~~~~~~~Dl~~~i~~l~~~~~---~~~~~lvG~SlGg~i~~~yl~~~~~-------~ 197 (388)
T PLN02511 133 VVFNSR-GCADSPVTTP-QF---YSASFTGDLRQVVDHVAGRYP---SANLYAAGWSLGANILVNYLGEEGE-------N 197 (388)
T ss_pred EEEecC-CCCCCCCCCc-CE---EcCCchHHHHHHHHHHHHHCC---CCCEEEEEechhHHHHHHHHHhcCC-------C
Confidence 999988 4444322111 11 123456677777776666676 5689999999999876555533211 1
Q ss_pred eeeeEEEeeccccC
Q 017435 224 INLKGIMVGNAVTD 237 (371)
Q Consensus 224 inLkGi~igng~~d 237 (371)
..+++.++.++-.|
T Consensus 198 ~~v~~~v~is~p~~ 211 (388)
T PLN02511 198 CPLSGAVSLCNPFD 211 (388)
T ss_pred CCceEEEEECCCcC
Confidence 34666665544334
No 47
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.33 E-value=0.0012 Score=64.71 Aligned_cols=137 Identities=15% Similarity=0.231 Sum_probs=87.3
Q ss_pred CcceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcc
Q 017435 63 SFQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEAN 142 (371)
Q Consensus 63 ~~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~an 142 (371)
..+-.+-|+.+.+ +... |.++-...+++++-++.+||==+.+++.+- |=.+..+.-|
T Consensus 62 ~v~~~~~~v~i~~--~~~i--w~~~~~~~~~~~~plVliHGyGAg~g~f~~-------------------Nf~~La~~~~ 118 (365)
T KOG4409|consen 62 PVPYSKKYVRIPN--GIEI--WTITVSNESANKTPLVLIHGYGAGLGLFFR-------------------NFDDLAKIRN 118 (365)
T ss_pred CCCcceeeeecCC--Ccee--EEEeecccccCCCcEEEEeccchhHHHHHH-------------------hhhhhhhcCc
Confidence 3444566777763 2222 333333445777888889973233333111 3334555789
Q ss_pred eEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 143 LLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 143 ll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
|-.||.| |-|.| .-+. +. .+.+.+-+.+.+-+++|..+.. -.+.+|+|||+||-.....|.+-.++
T Consensus 119 vyaiDll-G~G~S--SRP~-F~-~d~~~~e~~fvesiE~WR~~~~---L~KmilvGHSfGGYLaa~YAlKyPer------ 184 (365)
T KOG4409|consen 119 VYAIDLL-GFGRS--SRPK-FS-IDPTTAEKEFVESIEQWRKKMG---LEKMILVGHSFGGYLAAKYALKYPER------ 184 (365)
T ss_pred eEEeccc-CCCCC--CCCC-CC-CCcccchHHHHHHHHHHHHHcC---CcceeEeeccchHHHHHHHHHhChHh------
Confidence 9999998 44444 3332 22 2333445588899999998774 45799999999998777777666655
Q ss_pred ceeeeEEEeeccccCcc
Q 017435 223 PINLKGIMVGNAVTDNY 239 (371)
Q Consensus 223 ~inLkGi~igng~~d~~ 239 (371)
++-++|.+||--+.
T Consensus 185 ---V~kLiLvsP~Gf~~ 198 (365)
T KOG4409|consen 185 ---VEKLILVSPWGFPE 198 (365)
T ss_pred ---hceEEEeccccccc
Confidence 77789999887665
No 48
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=97.22 E-value=0.0056 Score=58.44 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=31.3
Q ss_pred CCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 189 YKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 189 ~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
....+++|+|+|+||..+-.+|.+-.+ .+++++..+|+.++.
T Consensus 135 ~~~~~~~~~G~S~GG~~a~~~a~~~p~---------~~~~~~~~~~~~~~~ 176 (275)
T TIGR02821 135 LDGERQGITGHSMGGHGALVIALKNPD---------RFKSVSAFAPIVAPS 176 (275)
T ss_pred CCCCceEEEEEChhHHHHHHHHHhCcc---------cceEEEEECCccCcc
Confidence 445679999999999876666654222 278999999998864
No 49
>PRK05855 short chain dehydrogenase; Validated
Probab=97.15 E-value=0.0021 Score=66.83 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
+..+.|+-+ .+.+.|.||++||.++.+.. |..+.+ .+ .+..+++.+|.| |.|.|..
T Consensus 12 g~~l~~~~~----g~~~~~~ivllHG~~~~~~~-w~~~~~-----------~L-------~~~~~Vi~~D~~-G~G~S~~ 67 (582)
T PRK05855 12 GVRLAVYEW----GDPDRPTVVLVHGYPDNHEV-WDGVAP-----------LL-------ADRFRVVAYDVR-GAGRSSA 67 (582)
T ss_pred CEEEEEEEc----CCCCCCeEEEEcCCCchHHH-HHHHHH-----------Hh-------hcceEEEEecCC-CCCCCCC
Confidence 567777643 23457999999999887766 344332 11 234689999988 7777753
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHH
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQL 209 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~l 209 (371)
..... ..+.+..++|+..+++.. .+ ..+++|+|+|+||..+-.+
T Consensus 68 ~~~~~--~~~~~~~a~dl~~~i~~l---~~---~~~~~lvGhS~Gg~~a~~~ 111 (582)
T PRK05855 68 PKRTA--AYTLARLADDFAAVIDAV---SP---DRPVHLLAHDWGSIQGWEA 111 (582)
T ss_pred CCccc--ccCHHHHHHHHHHHHHHh---CC---CCcEEEEecChHHHHHHHH
Confidence 22211 135677888999888752 11 3469999999999544333
No 50
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.13 E-value=0.0028 Score=74.71 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=73.8
Q ss_pred EEEEEEee-cCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccC
Q 017435 81 LFYWLTEA-THNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 81 lfy~f~es-~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~ 159 (371)
+.||..-. ..+.+..|.||+|||.+|++..+ ..+.+ .+ .+..+++.+|.| |-|.|....
T Consensus 1356 ~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w-~~~~~-----------~L-------~~~~rVi~~Dl~-G~G~S~~~~ 1415 (1655)
T PLN02980 1356 FSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDW-IPIMK-----------AI-------SGSARCISIDLP-GHGGSKIQN 1415 (1655)
T ss_pred eEEEEEEEecCCCCCCCeEEEECCCCCCHHHH-HHHHH-----------HH-------hCCCEEEEEcCC-CCCCCCCcc
Confidence 45554221 22345678999999999999873 33331 11 234689999988 555553211
Q ss_pred C--C--CCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 160 S--S--DLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 160 ~--~--~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
. . .....+.+..|+++..+++. +...+++|+|+|+||..+-.+|.+..+. ++++++.+|.
T Consensus 1416 ~~~~~~~~~~~si~~~a~~l~~ll~~-------l~~~~v~LvGhSmGG~iAl~~A~~~P~~---------V~~lVlis~~ 1479 (1655)
T PLN02980 1416 HAKETQTEPTLSVELVADLLYKLIEH-------ITPGKVTLVGYSMGARIALYMALRFSDK---------IEGAVIISGS 1479 (1655)
T ss_pred ccccccccccCCHHHHHHHHHHHHHH-------hCCCCEEEEEECHHHHHHHHHHHhChHh---------hCEEEEECCC
Confidence 1 0 00012455667777766653 2346899999999999888887654332 7888877764
No 51
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.10 E-value=0.0039 Score=55.10 Aligned_cols=104 Identities=23% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
.|.+++++|+|+++... ....+. +..... + .+++.+|+| |.|.|- .. .. .....+++
T Consensus 21 ~~~i~~~hg~~~~~~~~-~~~~~~-----------~~~~~~---~-~~~~~~d~~-g~g~s~-~~--~~---~~~~~~~~ 77 (282)
T COG0596 21 GPPLVLLHGFPGSSSVW-RPVFKV-----------LPALAA---R-YRVIAPDLR-GHGRSD-PA--GY---SLSAYADD 77 (282)
T ss_pred CCeEEEeCCCCCchhhh-HHHHHH-----------hhcccc---c-eEEEEeccc-CCCCCC-cc--cc---cHHHHHHH
Confidence 67999999999999874 331100 000111 1 799999999 999886 11 11 11222455
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
+..+++ .. ...++++.|+|+||..+-.+|....+ .++++++.++...
T Consensus 78 ~~~~~~----~~---~~~~~~l~G~S~Gg~~~~~~~~~~p~---------~~~~~v~~~~~~~ 124 (282)
T COG0596 78 LAALLD----AL---GLEKVVLVGHSMGGAVALALALRHPD---------RVRGLVLIGPAPP 124 (282)
T ss_pred HHHHHH----Hh---CCCceEEEEecccHHHHHHHHHhcch---------hhheeeEecCCCC
Confidence 555544 22 23349999999998777666665544 2777877776655
No 52
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.02 E-value=0.0038 Score=60.68 Aligned_cols=137 Identities=20% Similarity=0.199 Sum_probs=89.0
Q ss_pred eEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEE
Q 017435 66 QFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLF 145 (371)
Q Consensus 66 ~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~ 145 (371)
...|+....+ +..++|+.+++..++. .+|+++||.=..+.- |-.+.+ .+.. .=..++=
T Consensus 9 ~~~~~~~~~d--~~~~~~~~~~~~~~~~--g~Vvl~HG~~Eh~~r-y~~la~-----------~l~~------~G~~V~~ 66 (298)
T COG2267 9 RTEGYFTGAD--GTRLRYRTWAAPEPPK--GVVVLVHGLGEHSGR-YEELAD-----------DLAA------RGFDVYA 66 (298)
T ss_pred cccceeecCC--CceEEEEeecCCCCCC--cEEEEecCchHHHHH-HHHHHH-----------HHHh------CCCEEEE
Confidence 3445555433 6789999888765444 899999998666654 333221 1111 1247888
Q ss_pred eecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCcee
Q 017435 146 LETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPIN 225 (371)
Q Consensus 146 iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~in 225 (371)
+|.| |.|-|.- ...... .+-.....|+..|++..-..+| ..|+||+|||.||-.+...+..-. -.
T Consensus 67 ~D~R-GhG~S~r-~~rg~~-~~f~~~~~dl~~~~~~~~~~~~---~~p~~l~gHSmGg~Ia~~~~~~~~---------~~ 131 (298)
T COG2267 67 LDLR-GHGRSPR-GQRGHV-DSFADYVDDLDAFVETIAEPDP---GLPVFLLGHSMGGLIALLYLARYP---------PR 131 (298)
T ss_pred ecCC-CCCCCCC-CCcCCc-hhHHHHHHHHHHHHHHHhccCC---CCCeEEEEeCcHHHHHHHHHHhCC---------cc
Confidence 9999 7777751 122221 1334455666666666544444 679999999999987766665333 34
Q ss_pred eeEEEeeccccCcc
Q 017435 226 LKGIMVGNAVTDNY 239 (371)
Q Consensus 226 LkGi~igng~~d~~ 239 (371)
++|+++-+|++...
T Consensus 132 i~~~vLssP~~~l~ 145 (298)
T COG2267 132 IDGLVLSSPALGLG 145 (298)
T ss_pred ccEEEEECccccCC
Confidence 99999999999887
No 53
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=96.99 E-value=0.00094 Score=59.95 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=51.3
Q ss_pred ceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCC
Q 017435 142 NLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSK 221 (371)
Q Consensus 142 nll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~ 221 (371)
+|+-+|+| |.|+|....... ...-...++.+.+..+.++.+ ..+++++|+||||..+-.+|..-.+
T Consensus 2 ~vi~~d~r-G~g~S~~~~~~~----~~~~~~~~~~~~~~~~~~~l~---~~~~~~vG~S~Gg~~~~~~a~~~p~------ 67 (230)
T PF00561_consen 2 DVILFDLR-GFGYSSPHWDPD----FPDYTTDDLAADLEALREALG---IKKINLVGHSMGGMLALEYAAQYPE------ 67 (230)
T ss_dssp EEEEEECT-TSTTSSSCCGSG----SCTHCHHHHHHHHHHHHHHHT---TSSEEEEEETHHHHHHHHHHHHSGG------
T ss_pred EEEEEeCC-CCCCCCCCccCC----cccccHHHHHHHHHHHHHHhC---CCCeEEEEECCChHHHHHHHHHCch------
Confidence 68889988 777766300011 223345555666666666655 4459999999999888777765444
Q ss_pred CceeeeEEEeeccc
Q 017435 222 HPINLKGIMVGNAV 235 (371)
Q Consensus 222 ~~inLkGi~igng~ 235 (371)
.++++++.++.
T Consensus 68 ---~v~~lvl~~~~ 78 (230)
T PF00561_consen 68 ---RVKKLVLISPP 78 (230)
T ss_dssp ---GEEEEEEESES
T ss_pred ---hhcCcEEEeee
Confidence 38999988885
No 54
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.99 E-value=0.001 Score=63.95 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCCCeEEEeCCCCCch-hhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHH
Q 017435 92 PLNKPLVVWLNGGPGCS-SVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGR 170 (371)
Q Consensus 92 ~~~~PlvlwlnGGPG~S-s~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~ 170 (371)
..++|++|+++|-.|.. ..++-.+. +.+.-....|++.+|-+.+..-.|.. . ..+...
T Consensus 33 ~~~~p~vilIHG~~~~~~~~~~~~l~----------------~~ll~~~~~nVi~vD~~~~~~~~y~~---a--~~~~~~ 91 (275)
T cd00707 33 NPSRPTRFIIHGWTSSGEESWISDLR----------------KAYLSRGDYNVIVVDWGRGANPNYPQ---A--VNNTRV 91 (275)
T ss_pred CCCCCcEEEEcCCCCCCCCcHHHHHH----------------HHHHhcCCCEEEEEECccccccChHH---H--HHhHHH
Confidence 34579999999977655 22111110 00111134799999988431111110 0 123445
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.++++..+|+...+.. .+...+++|+|+|.||+.+-.+|.++.+ .++.|+..+|.
T Consensus 92 v~~~la~~l~~L~~~~-g~~~~~i~lIGhSlGa~vAg~~a~~~~~---------~v~~iv~LDPa 146 (275)
T cd00707 92 VGAELAKFLDFLVDNT-GLSLENVHLIGHSLGAHVAGFAGKRLNG---------KLGRITGLDPA 146 (275)
T ss_pred HHHHHHHHHHHHHHhc-CCChHHEEEEEecHHHHHHHHHHHHhcC---------ccceeEEecCC
Confidence 6777777777655543 2334679999999999998888876533 27788877664
No 55
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=96.99 E-value=0.003 Score=60.39 Aligned_cols=110 Identities=23% Similarity=0.344 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHH
Q 017435 93 LNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTA 172 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a 172 (371)
..-|+++.+||| |.|.|.|..|.- .+..+- ..-++-+| --|.|=+...+..++ +-+..+
T Consensus 72 t~gpil~l~HG~-G~S~LSfA~~a~-----------el~s~~-----~~r~~a~D-lRgHGeTk~~~e~dl---S~eT~~ 130 (343)
T KOG2564|consen 72 TEGPILLLLHGG-GSSALSFAIFAS-----------ELKSKI-----RCRCLALD-LRGHGETKVENEDDL---SLETMS 130 (343)
T ss_pred CCccEEEEeecC-cccchhHHHHHH-----------HHHhhc-----ceeEEEee-ccccCccccCChhhc---CHHHHH
Confidence 455999999988 999887776641 111110 11247788 458888877766664 778899
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
+|+...++++|..-| -+++|+|||.||-.+.+.|..=.- -+|-|+.+.+=+
T Consensus 131 KD~~~~i~~~fge~~----~~iilVGHSmGGaIav~~a~~k~l--------psl~Gl~viDVV 181 (343)
T KOG2564|consen 131 KDFGAVIKELFGELP----PQIILVGHSMGGAIAVHTAASKTL--------PSLAGLVVIDVV 181 (343)
T ss_pred HHHHHHHHHHhccCC----CceEEEeccccchhhhhhhhhhhc--------hhhhceEEEEEe
Confidence 999999999886544 269999999999887665532111 347788775533
No 56
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=96.93 E-value=0.0064 Score=60.87 Aligned_cols=137 Identities=15% Similarity=0.020 Sum_probs=76.4
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhh--hhcCCeEEccCCCcee-eCCCCCcCCcceEEeeccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGAS--EEIGPFRINKTASGLY-LNKLSWNTEANLLFLETPAGVGF 154 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~--~e~GP~~~~~~~~~l~-~n~~sW~~~anll~iD~PvGtGf 154 (371)
+.+++|.-+-. .+++..|.||.+||-+|.+... ... .+.+|=.+. .+. ....--.+...||-+|.|-+.|.
T Consensus 32 ~~~~~y~~~G~-~~~~~~p~vvl~HG~~~~~~~~-~~~~~~~~~~~~w~----~~~~~~~~l~~~~~~vi~~Dl~G~~~~ 105 (379)
T PRK00175 32 PVELAYETYGT-LNADRSNAVLICHALTGDHHVA-GPHSPDDPKPGWWD----NMVGPGKPIDTDRYFVICSNVLGGCKG 105 (379)
T ss_pred CceEEEEeccc-cCCCCCCEEEEeCCcCCchhhc-ccccccCCCCcchh----hccCCCCccCccceEEEeccCCCCCCC
Confidence 45788875421 1234579999999999988652 211 000000000 000 00000023568999998843444
Q ss_pred ccccCC------C----CCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCC-eEEEcccccccchHHHHHHHHHhccCCCCc
Q 017435 155 SYTNRS------S----DLLDTGDGRTAKDSLQFLIRWIDRFPRYKGRE-VYLTGESYAGHYVPQLAREIMIHNSKSKHP 223 (371)
Q Consensus 155 Sy~~~~------~----~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~-~yi~GESYgG~yvP~la~~i~~~n~~~~~~ 223 (371)
|.+... . ++...+.+..++++..+|+. +.-.+ ++|+|+|+||..+-.+|.+-.+.
T Consensus 106 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~------- 171 (379)
T PRK00175 106 STGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDA-------LGITRLAAVVGGSMGGMQALEWAIDYPDR------- 171 (379)
T ss_pred CCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHH-------hCCCCceEEEEECHHHHHHHHHHHhChHh-------
Confidence 532110 0 00113455566666666653 22345 58999999998888888765443
Q ss_pred eeeeEEEeecccc
Q 017435 224 INLKGIMVGNAVT 236 (371)
Q Consensus 224 inLkGi~igng~~ 236 (371)
++++++.|+..
T Consensus 172 --v~~lvl~~~~~ 182 (379)
T PRK00175 172 --VRSALVIASSA 182 (379)
T ss_pred --hhEEEEECCCc
Confidence 88999988654
No 57
>PRK07581 hypothetical protein; Validated
Probab=96.92 E-value=0.0052 Score=60.07 Aligned_cols=130 Identities=9% Similarity=-0.042 Sum_probs=70.4
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
+..++|.-+.. ..+...|+||+++|++|.+.++ ......||- +. .+...+|-+|.| |.|.|-.
T Consensus 25 ~~~l~y~~~G~-~~~~~~~~vll~~~~~~~~~~~-~~~~~~~~~--------l~------~~~~~vi~~D~~-G~G~S~~ 87 (339)
T PRK07581 25 DARLAYKTYGT-LNAAKDNAILYPTWYSGTHQDN-EWLIGPGRA--------LD------PEKYFIIIPNMF-GNGLSSS 87 (339)
T ss_pred CceEEEEecCc-cCCCCCCEEEEeCCCCCCcccc-hhhccCCCc--------cC------cCceEEEEecCC-CCCCCCC
Confidence 45677664321 1335568888876666555442 211111111 11 235789999999 6666542
Q ss_pred cCCC--CCCC--CCcHHHHHHHHHHHHHHHHhCCCCCCCC-eEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEee
Q 017435 158 NRSS--DLLD--TGDGRTAKDSLQFLIRWIDRFPRYKGRE-VYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVG 232 (371)
Q Consensus 158 ~~~~--~~~~--~~~~~~a~~~~~fL~~f~~~fp~~~~~~-~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~ig 232 (371)
.... .+.. ......++++........+. +.-.+ .+|+|+|+||..+-.+|.+-.+. ++++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---lgi~~~~~lvG~S~GG~va~~~a~~~P~~---------V~~Lvli 155 (339)
T PRK07581 88 PSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK---FGIERLALVVGWSMGAQQTYHWAVRYPDM---------VERAAPI 155 (339)
T ss_pred CCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH---hCCCceEEEEEeCHHHHHHHHHHHHCHHH---------Hhhheee
Confidence 2111 1100 01112445554422222222 23346 57999999999999999876665 7777777
Q ss_pred cccc
Q 017435 233 NAVT 236 (371)
Q Consensus 233 ng~~ 236 (371)
++..
T Consensus 156 ~~~~ 159 (339)
T PRK07581 156 AGTA 159 (339)
T ss_pred ecCC
Confidence 6543
No 58
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=96.91 E-value=0.0073 Score=59.39 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=86.9
Q ss_pred CCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhh-hhhh----cCCeEEccCCCceeeC---CCCC-cCCcceEEee
Q 017435 77 PGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYG-ASEE----IGPFRINKTASGLYLN---KLSW-NTEANLLFLE 147 (371)
Q Consensus 77 ~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g-~~~e----~GP~~~~~~~~~l~~n---~~sW-~~~anll~iD 147 (371)
.|..++++..+.+ ..+.+|+.+||==+-+...+. -..| -+|+.|+.+.. ..++ -..+ .+-.+|+-+|
T Consensus 6 ~g~~l~~~~~~~~---~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry-~~y~~~~~~~l~~~G~~V~~~D 81 (332)
T TIGR01607 6 DGLLLKTYSWIVK---NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNY-YIYKDSWIENFNKNGYSVYGLD 81 (332)
T ss_pred CCCeEEEeeeecc---CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcc-eEeeHHHHHHHHHCCCcEEEec
Confidence 3567887766643 345799999985444432110 0011 13444433211 0011 0122 2347899999
Q ss_pred cccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhC----------------CCCC-CCCeEEEcccccccchHHHH
Q 017435 148 TPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRF----------------PRYK-GREVYLTGESYAGHYVPQLA 210 (371)
Q Consensus 148 ~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~f----------------p~~~-~~~~yi~GESYgG~yvP~la 210 (371)
.| |.|-|-+.........+-+..++|+..+++..-+.. .++. +.|+||.|||.||..+-.++
T Consensus 82 ~r-GHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~ 160 (332)
T TIGR01607 82 LQ-GHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLL 160 (332)
T ss_pred cc-ccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHH
Confidence 87 888776432211111255667888888887654310 0222 57999999999999887776
Q ss_pred HHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 211 REIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 211 ~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
....+.... .....++|+++.+|.+..
T Consensus 161 ~~~~~~~~~-~~~~~i~g~i~~s~~~~i 187 (332)
T TIGR01607 161 ELLGKSNEN-NDKLNIKGCISLSGMISI 187 (332)
T ss_pred HHhcccccc-ccccccceEEEeccceEE
Confidence 654332100 011468999988887643
No 59
>PLN02442 S-formylglutathione hydrolase
Probab=96.87 E-value=0.0079 Score=57.81 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
..+++...+..++.. ....+++|+|+|+||+-+-.+|.+-.+ .+++++..+|..++.
T Consensus 125 ~~~~l~~~i~~~~~~---~~~~~~~i~G~S~GG~~a~~~a~~~p~---------~~~~~~~~~~~~~~~ 181 (283)
T PLN02442 125 VVKELPKLLSDNFDQ---LDTSRASIFGHSMGGHGALTIYLKNPD---------KYKSVSAFAPIANPI 181 (283)
T ss_pred HHHHHHHHHHHHHHh---cCCCceEEEEEChhHHHHHHHHHhCch---------hEEEEEEECCccCcc
Confidence 345555566665543 345679999999999766555543221 278999999998865
No 60
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.77 E-value=0.011 Score=57.16 Aligned_cols=138 Identities=19% Similarity=0.178 Sum_probs=88.8
Q ss_pred EEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEe
Q 017435 67 FSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFL 146 (371)
Q Consensus 67 ~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~i 146 (371)
..-|++.. .|..||.-......+++.+-+|+.++|.=+-+|..|-.+.. +++..| .-+.-+
T Consensus 28 ~~~~~~n~--rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~----~l~~~g-------------~~v~a~ 88 (313)
T KOG1455|consen 28 SESFFTNP--RGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAK----RLAKSG-------------FAVYAI 88 (313)
T ss_pred eeeeEEcC--CCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHH----HHHhCC-------------CeEEEe
Confidence 34455433 37789987766655567788999999976655431221110 111111 246678
Q ss_pred ecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceee
Q 017435 147 ETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINL 226 (371)
Q Consensus 147 D~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inL 226 (371)
|++ |.|.|- ....+. .+-+..++|...|+..+- ...+++..|.|+.|||.||-.+-.++.+ + +--.
T Consensus 89 D~~-GhG~Sd--Gl~~yi-~~~d~~v~D~~~~~~~i~-~~~e~~~lp~FL~GeSMGGAV~Ll~~~k---~------p~~w 154 (313)
T KOG1455|consen 89 DYE-GHGRSD--GLHAYV-PSFDLVVDDVISFFDSIK-EREENKGLPRFLFGESMGGAVALLIALK---D------PNFW 154 (313)
T ss_pred ecc-CCCcCC--CCcccC-CcHHHHHHHHHHHHHHHh-hccccCCCCeeeeecCcchHHHHHHHhh---C------Cccc
Confidence 987 666664 334443 477778888888887653 4668889999999999999766666544 1 1237
Q ss_pred eEEEeeccccC
Q 017435 227 KGIMVGNAVTD 237 (371)
Q Consensus 227 kGi~igng~~d 237 (371)
.|+++..|..-
T Consensus 155 ~G~ilvaPmc~ 165 (313)
T KOG1455|consen 155 DGAILVAPMCK 165 (313)
T ss_pred ccceeeecccc
Confidence 78887777653
No 61
>PRK10566 esterase; Provisional
Probab=96.77 E-value=0.0052 Score=56.94 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=60.1
Q ss_pred EEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-CcceEEeecccccccccccCC
Q 017435 82 FYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANLLFLETPAGVGFSYTNRS 160 (371)
Q Consensus 82 fy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anll~iD~PvGtGfSy~~~~ 160 (371)
+|-++++.......|+||++||++|.... +..+. ..+.+ -.+++.+|.| |.|-|+....
T Consensus 14 ~~~~~p~~~~~~~~p~vv~~HG~~~~~~~-~~~~~------------------~~l~~~G~~v~~~d~~-g~G~~~~~~~ 73 (249)
T PRK10566 14 VLHAFPAGQRDTPLPTVFFYHGFTSSKLV-YSYFA------------------VALAQAGFRVIMPDAP-MHGARFSGDE 73 (249)
T ss_pred eEEEcCCCCCCCCCCEEEEeCCCCcccch-HHHHH------------------HHHHhCCCEEEEecCC-cccccCCCcc
Confidence 33334443223457999999999887654 22221 01222 2578889977 5554442211
Q ss_pred CCCCCCCc-----HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHH
Q 017435 161 SDLLDTGD-----GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAR 211 (371)
Q Consensus 161 ~~~~~~~~-----~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~ 211 (371)
.. ...+ ....+++..++ .++.+.+.....+++|+|+|+||..+-.++.
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~ 126 (249)
T PRK10566 74 AR--RLNHFWQILLQNMQEFPTLR-AAIREEGWLLDDRLAVGGASMGGMTALGIMA 126 (249)
T ss_pred cc--chhhHHHHHHHHHHHHHHHH-HHHHhcCCcCccceeEEeecccHHHHHHHHH
Confidence 10 0010 12344554444 4444455455678999999999998876664
No 62
>PRK10985 putative hydrolase; Provisional
Probab=96.74 E-value=0.0091 Score=58.33 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=67.6
Q ss_pred eEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhh-hhhcCCeEEccCCCceeeCCCCCcCCcceEEee
Q 017435 69 GYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGA-SEEIGPFRINKTASGLYLNKLSWNTEANLLFLE 147 (371)
Q Consensus 69 Gyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~-~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD 147 (371)
-.++..+ |..+.+++.+....+.++|+||.++|.+|++...+.. +.+ .+.. +-.+++-+|
T Consensus 34 ~~~~~~d--g~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~~~~~~-----------~l~~------~G~~v~~~d 94 (324)
T PRK10985 34 QRLELPD--GDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYAHGLLE-----------AAQK------RGWLGVVMH 94 (324)
T ss_pred eEEECCC--CCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHHHHHHH-----------HHHH------CCCEEEEEe
Confidence 3455554 4455444433323345789999999999985421111 110 0111 113567778
Q ss_pred cccccccccccCC-CCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceee
Q 017435 148 TPAGVGFSYTNRS-SDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINL 226 (371)
Q Consensus 148 ~PvGtGfSy~~~~-~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inL 226 (371)
.+ |++-+... ........ .+|+..+++..-++++ ..+++++|+|+||..+-..+.+-.+ . ..+
T Consensus 95 ~r---G~g~~~~~~~~~~~~~~---~~D~~~~i~~l~~~~~---~~~~~~vG~S~GG~i~~~~~~~~~~---~----~~~ 158 (324)
T PRK10985 95 FR---GCSGEPNRLHRIYHSGE---TEDARFFLRWLQREFG---HVPTAAVGYSLGGNMLACLLAKEGD---D----LPL 158 (324)
T ss_pred CC---CCCCCccCCcceECCCc---hHHHHHHHHHHHHhCC---CCCEEEEEecchHHHHHHHHHhhCC---C----CCc
Confidence 76 44322111 11101122 3444444433223454 4689999999999865544433211 1 236
Q ss_pred eEEEeeccccCc
Q 017435 227 KGIMVGNAVTDN 238 (371)
Q Consensus 227 kGi~igng~~d~ 238 (371)
+++++.++-.+.
T Consensus 159 ~~~v~i~~p~~~ 170 (324)
T PRK10985 159 DAAVIVSAPLML 170 (324)
T ss_pred cEEEEEcCCCCH
Confidence 666665555443
No 63
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=96.73 E-value=0.016 Score=56.59 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=91.2
Q ss_pred cceEEeEEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCC-cc
Q 017435 64 FQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTE-AN 142 (371)
Q Consensus 64 ~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~-an 142 (371)
.....+|++++ + +++++.|. .+...|+||.|+|=|=.+=.+ =.-. ..+ ... ..
T Consensus 20 ~~~~hk~~~~~---g--I~~h~~e~--g~~~gP~illlHGfPe~wysw-r~q~-----------~~l-------a~~~~r 73 (322)
T KOG4178|consen 20 SAISHKFVTYK---G--IRLHYVEG--GPGDGPIVLLLHGFPESWYSW-RHQI-----------PGL-------ASRGYR 73 (322)
T ss_pred hhcceeeEEEc---c--EEEEEEee--cCCCCCEEEEEccCCccchhh-hhhh-----------hhh-------hhcceE
Confidence 45678888876 3 77777776 788999999999999877542 1000 011 111 57
Q ss_pred eEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 143 LLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 143 ll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
++.+|.+ ||..++........+....+.|+..+|.. +....++++||+||+..+=.+|....+.-..
T Consensus 74 viA~Dlr---GyG~Sd~P~~~~~Yt~~~l~~di~~lld~-------Lg~~k~~lvgHDwGaivaw~la~~~Perv~~--- 140 (322)
T KOG4178|consen 74 VIAPDLR---GYGFSDAPPHISEYTIDELVGDIVALLDH-------LGLKKAFLVGHDWGAIVAWRLALFYPERVDG--- 140 (322)
T ss_pred EEecCCC---CCCCCCCCCCcceeeHHHHHHHHHHHHHH-------hccceeEEEeccchhHHHHHHHHhChhhcce---
Confidence 8999988 55444444432335777888888888874 3456899999999999888888777665221
Q ss_pred ceeeeEEEeeccccCccc
Q 017435 223 PINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 223 ~inLkGi~igng~~d~~~ 240 (371)
.+++++... ||..+|..
T Consensus 141 lv~~nv~~~-~p~~~~~~ 157 (322)
T KOG4178|consen 141 LVTLNVPFP-NPKLKPLD 157 (322)
T ss_pred EEEecCCCC-Ccccchhh
Confidence 144444433 66666654
No 64
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=96.66 E-value=0.0066 Score=62.15 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=52.7
Q ss_pred CcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 140 EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
..|++-+|.| |++.+...... .+...+|+++.++|+...+.. .+.-.+++|+|+|.|||.+-.+|.+..
T Consensus 73 d~nVI~VDw~---g~g~s~y~~a~--~~t~~vg~~la~lI~~L~~~~-gl~l~~VhLIGHSLGAhIAg~ag~~~p----- 141 (442)
T TIGR03230 73 SANVIVVDWL---SRAQQHYPTSA--AYTKLVGKDVAKFVNWMQEEF-NYPWDNVHLLGYSLGAHVAGIAGSLTK----- 141 (442)
T ss_pred CCEEEEEECC---CcCCCCCcccc--ccHHHHHHHHHHHHHHHHHhh-CCCCCcEEEEEECHHHHHHHHHHHhCC-----
Confidence 4799999999 44432211111 234567788888877554333 244568999999999998887775332
Q ss_pred CCCceeeeEEEeeccc
Q 017435 220 SKHPINLKGIMVGNAV 235 (371)
Q Consensus 220 ~~~~inLkGi~igng~ 235 (371)
-.+..|++.+|.
T Consensus 142 ----~rV~rItgLDPA 153 (442)
T TIGR03230 142 ----HKVNRITGLDPA 153 (442)
T ss_pred ----cceeEEEEEcCC
Confidence 127778777764
No 65
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.62 E-value=0.026 Score=55.90 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=88.7
Q ss_pred EEeEEEecCCCCceEEEEEEeecCC-C-CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCc-CCcce
Q 017435 67 FSGYVPVNKVPGRALFYWLTEATHN-P-LNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWN-TEANL 143 (371)
Q Consensus 67 ~sGyl~v~~~~~~~lfy~f~es~~~-~-~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~-~~anl 143 (371)
.+.-+.++. .+.++-+.|..... + ..+|+|||+|||=-|-+.. -. ....+--++. +.++.
T Consensus 62 ~~~dv~~~~--~~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~-~~--------------~~y~~~~~~~a~~~~~ 124 (336)
T KOG1515|consen 62 TSKDVTIDP--FTNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSA-NS--------------PAYDSFCTRLAAELNC 124 (336)
T ss_pred eeeeeEecC--CCCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCC-CC--------------chhHHHHHHHHHHcCe
Confidence 444455543 67899999987654 3 5899999999997665421 00 0000111121 34455
Q ss_pred EEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHH-HHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 144 LFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIR-WIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 144 l~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~-f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
+-|= |+|--.... .++. .-+..-+.+.-+++. |....=..+ .++|+|.|-||-.+-.+|+++.+.. ..
T Consensus 125 vvvS----VdYRLAPEh-~~Pa-~y~D~~~Al~w~~~~~~~~~~~D~~--rv~l~GDSaGGNia~~va~r~~~~~---~~ 193 (336)
T KOG1515|consen 125 VVVS----VDYRLAPEH-PFPA-AYDDGWAALKWVLKNSWLKLGADPS--RVFLAGDSAGGNIAHVVAQRAADEK---LS 193 (336)
T ss_pred EEEe----cCcccCCCC-CCCc-cchHHHHHHHHHHHhHHHHhCCCcc--cEEEEccCccHHHHHHHHHHHhhcc---CC
Confidence 4432 355554332 2321 223333334444444 666655443 3999999999999999999998753 12
Q ss_pred ceeeeEEEeeccccCccc
Q 017435 223 PINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 223 ~inLkGi~igng~~d~~~ 240 (371)
++.|+|.++.-|++....
T Consensus 194 ~~ki~g~ili~P~~~~~~ 211 (336)
T KOG1515|consen 194 KPKIKGQILIYPFFQGTD 211 (336)
T ss_pred CcceEEEEEEecccCCCC
Confidence 378999999998876654
No 66
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=96.40 E-value=0.0082 Score=63.16 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=76.8
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCc-CCcceEEeeccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWN-TEANLLFLETPAGVGFSY 156 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~-~~anll~iD~PvGtGfSy 156 (371)
|..|+..++... +....|+||.++|-...+....+. + . ....-|. +-..++-+|.+ |.|.|-
T Consensus 6 G~~L~~~~~~P~-~~~~~P~Il~~~gyg~~~~~~~~~--~------------~-~~~~~l~~~Gy~vv~~D~R-G~g~S~ 68 (550)
T TIGR00976 6 GTRLAIDVYRPA-GGGPVPVILSRTPYGKDAGLRWGL--D------------K-TEPAWFVAQGYAVVIQDTR-GRGASE 68 (550)
T ss_pred CCEEEEEEEecC-CCCCCCEEEEecCCCCchhhcccc--c------------c-ccHHHHHhCCcEEEEEecc-ccccCC
Confidence 667887766543 244689999999653332210000 0 0 0011122 34689999966 777775
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 157 TNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+... . .+ ...++|+..+++ |..+.|. .+.++.++|+||||...-.+|.. .+ -.||+++..++..
T Consensus 69 g~~~--~--~~-~~~~~D~~~~i~-~l~~q~~-~~~~v~~~G~S~GG~~a~~~a~~---~~------~~l~aiv~~~~~~ 132 (550)
T TIGR00976 69 GEFD--L--LG-SDEAADGYDLVD-WIAKQPW-CDGNVGMLGVSYLAVTQLLAAVL---QP------PALRAIAPQEGVW 132 (550)
T ss_pred CceE--e--cC-cccchHHHHHHH-HHHhCCC-CCCcEEEEEeChHHHHHHHHhcc---CC------CceeEEeecCccc
Confidence 4321 1 12 346677776665 6666663 34589999999999765555431 11 2499999988887
Q ss_pred Ccc
Q 017435 237 DNY 239 (371)
Q Consensus 237 d~~ 239 (371)
|..
T Consensus 133 d~~ 135 (550)
T TIGR00976 133 DLY 135 (550)
T ss_pred chh
Confidence 654
No 67
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.36 E-value=0.015 Score=57.35 Aligned_cols=96 Identities=23% Similarity=0.288 Sum_probs=62.8
Q ss_pred CCCCeEEEeCC-CCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHH
Q 017435 93 LNKPLVVWLNG-GPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRT 171 (371)
Q Consensus 93 ~~~PlvlwlnG-GPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~ 171 (371)
.++|-||.++| |-++.+-. + ...+.++....-++-||-| |++|+..... +..-+
T Consensus 56 ~~~~pvlllHGF~~~~~~w~-----~-------------~~~~L~~~~~~~v~aiDl~---G~g~~s~~~~----~~~y~ 110 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSFSWR-----R-------------VVPLLSKAKGLRVLAIDLP---GHGYSSPLPR----GPLYT 110 (326)
T ss_pred CCCCcEEEeccccCCcccHh-----h-------------hccccccccceEEEEEecC---CCCcCCCCCC----CCcee
Confidence 57899999997 43443322 1 1123333334568999999 6776443321 22245
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 172 AKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 172 a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
+.+....++.|+..+ ...+++|+|+||||..+=.+|....+.
T Consensus 111 ~~~~v~~i~~~~~~~---~~~~~~lvghS~Gg~va~~~Aa~~P~~ 152 (326)
T KOG1454|consen 111 LRELVELIRRFVKEV---FVEPVSLVGHSLGGIVALKAAAYYPET 152 (326)
T ss_pred hhHHHHHHHHHHHhh---cCcceEEEEeCcHHHHHHHHHHhCccc
Confidence 666777777777654 366799999999999998888876665
No 68
>PRK10115 protease 2; Provisional
Probab=96.35 E-value=0.019 Score=62.16 Aligned_cols=138 Identities=16% Similarity=0.054 Sum_probs=75.0
Q ss_pred CCCceEEEEEEeecC--CCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcc-eEEeeccccc
Q 017435 76 VPGRALFYWLTEATH--NPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEAN-LLFLETPAGV 152 (371)
Q Consensus 76 ~~~~~lfy~f~es~~--~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~an-ll~iD~PvGt 152 (371)
..|..+-.|++-... .....|+||+.+||||.+... ++..+. ..|....= +++..--=|+
T Consensus 424 ~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p-~f~~~~----------------~~l~~rG~~v~~~n~RGs~ 486 (686)
T PRK10115 424 RDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDA-DFSFSR----------------LSLLDRGFVYAIVHVRGGG 486 (686)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC-CccHHH----------------HHHHHCCcEEEEEEcCCCC
Confidence 346777776654332 235569999999999999653 322221 12333322 3333323344
Q ss_pred ccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEee
Q 017435 153 GFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVG 232 (371)
Q Consensus 153 GfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~ig 232 (371)
||...=...+.. ..-...-+|+..+.+.. ....--....+.|.|-||||..+-.++.+ ..+ .+++++.+
T Consensus 487 g~G~~w~~~g~~-~~k~~~~~D~~a~~~~L-v~~g~~d~~rl~i~G~S~GG~l~~~~~~~---~Pd------lf~A~v~~ 555 (686)
T PRK10115 487 ELGQQWYEDGKF-LKKKNTFNDYLDACDAL-LKLGYGSPSLCYGMGGSAGGMLMGVAINQ---RPE------LFHGVIAQ 555 (686)
T ss_pred ccCHHHHHhhhh-hcCCCcHHHHHHHHHHH-HHcCCCChHHeEEEEECHHHHHHHHHHhc---Chh------heeEEEec
Confidence 444311111000 01112345666555433 33333345679999999999754443321 112 29999999
Q ss_pred ccccCcccc
Q 017435 233 NAVTDNYYD 241 (371)
Q Consensus 233 ng~~d~~~~ 241 (371)
.|++|....
T Consensus 556 vp~~D~~~~ 564 (686)
T PRK10115 556 VPFVDVVTT 564 (686)
T ss_pred CCchhHhhh
Confidence 999998753
No 69
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.018 Score=62.87 Aligned_cols=145 Identities=21% Similarity=0.200 Sum_probs=84.4
Q ss_pred EEeEEEecCCCCceEEEEEEeecC-C-CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-Ccce
Q 017435 67 FSGYVPVNKVPGRALFYWLTEATH-N-PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANL 143 (371)
Q Consensus 67 ~sGyl~v~~~~~~~lfy~f~es~~-~-~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anl 143 (371)
..+-+.++ |-..++++.-..+ + .+.=|++++..||||+-+.. +.+. +..|.+.+.. -+=+
T Consensus 499 ~~~~i~~~---~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~-~~~~-------------~~~~~~~~s~~g~~v 561 (755)
T KOG2100|consen 499 EFGKIEID---GITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVT-SKFS-------------VDWNEVVVSSRGFAV 561 (755)
T ss_pred eeEEEEec---cEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceee-eeEE-------------ecHHHHhhccCCeEE
Confidence 34445442 4566677665543 2 24559999999999943331 2211 2234444433 2457
Q ss_pred EEeecccccccccccCCCC-CCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 144 LFLETPAGVGFSYTNRSSD-LLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 144 l~iD~PvGtGfSy~~~~~~-~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
+.|| +.|+|+.=-..... +..-++ ...+|.....+.+.+.+ ..-...+.|+|-||||- ++..++.+...
T Consensus 562 ~~vd-~RGs~~~G~~~~~~~~~~lG~-~ev~D~~~~~~~~~~~~-~iD~~ri~i~GwSyGGy----~t~~~l~~~~~--- 631 (755)
T KOG2100|consen 562 LQVD-GRGSGGYGWDFRSALPRNLGD-VEVKDQIEAVKKVLKLP-FIDRSRVAIWGWSYGGY----LTLKLLESDPG--- 631 (755)
T ss_pred EEEc-CCCcCCcchhHHHHhhhhcCC-cchHHHHHHHHHHHhcc-cccHHHeEEeccChHHH----HHHHHhhhCcC---
Confidence 8888 77888653221111 111122 24566666666666655 44455699999999994 55555555321
Q ss_pred ceeeeEEEeeccccCcc
Q 017435 223 PINLKGIMVGNAVTDNY 239 (371)
Q Consensus 223 ~inLkGi~igng~~d~~ 239 (371)
--+|.-+-.+|++|-.
T Consensus 632 -~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 632 -DVFKCGVAVAPVTDWL 647 (755)
T ss_pred -ceEEEEEEecceeeee
Confidence 3366668889998887
No 70
>PLN00021 chlorophyllase
Probab=96.30 E-value=0.021 Score=56.02 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=67.6
Q ss_pred CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHH
Q 017435 92 PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRT 171 (371)
Q Consensus 92 ~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~ 171 (371)
..+.|+|+|+||+.+.... |..+.+ .+. +| -..++.+|.+ |++... . ..+.+.
T Consensus 49 ~g~~PvVv~lHG~~~~~~~-y~~l~~-----------~La----s~--G~~VvapD~~---g~~~~~---~---~~~i~d 101 (313)
T PLN00021 49 AGTYPVLLFLHGYLLYNSF-YSQLLQ-----------HIA----SH--GFIVVAPQLY---TLAGPD---G---TDEIKD 101 (313)
T ss_pred CCCCCEEEEECCCCCCccc-HHHHHH-----------HHH----hC--CCEEEEecCC---CcCCCC---c---hhhHHH
Confidence 4567999999999776654 233221 011 11 1456777766 443211 1 122334
Q ss_pred HHHHHHHHHHHHHh-C---CCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 172 AKDSLQFLIRWIDR-F---PRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 172 a~~~~~fL~~f~~~-f---p~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+.++..++.+-++. - .+....+++|+|+|.||..+-.+|....+... ...+++++..+|+...
T Consensus 102 ~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~----~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 102 AAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSL----PLKFSALIGLDPVDGT 168 (313)
T ss_pred HHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhcccccc----ccceeeEEeecccccc
Confidence 55666666553332 1 12334579999999999988888765443211 1458899888887544
No 71
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.28 E-value=0.03 Score=54.10 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=71.2
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcc-----eEEeec----
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEAN-----LLFLET---- 148 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~an-----ll~iD~---- 148 (371)
+...-||++....-++.+||||.|||+=|...-. - +-..|++.|. |+|-|+
T Consensus 44 g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~-~-------------------~~sg~d~lAd~~gFlV~yPdg~~~~ 103 (312)
T COG3509 44 GLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQ-L-------------------HGTGWDALADREGFLVAYPDGYDRA 103 (312)
T ss_pred CCccceEEEcCCCCCCCCCEEEEEecCCCChHHh-h-------------------cccchhhhhcccCcEEECcCccccc
Confidence 5677899988777788889999999987766431 1 1223333332 233221
Q ss_pred --ccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceee
Q 017435 149 --PAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINL 226 (371)
Q Consensus 149 --PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inL 226 (371)
|-+.|=++..... ..+...+..+.+.+.....+| ......+||+|=|-||..+-.|+..-.+- +
T Consensus 104 wn~~~~~~~~~p~~~----~~g~ddVgflr~lva~l~~~~-gidp~RVyvtGlS~GG~Ma~~lac~~p~~---------f 169 (312)
T COG3509 104 WNANGCGNWFGPADR----RRGVDDVGFLRALVAKLVNEY-GIDPARVYVTGLSNGGRMANRLACEYPDI---------F 169 (312)
T ss_pred cCCCcccccCCcccc----cCCccHHHHHHHHHHHHHHhc-CcCcceEEEEeeCcHHHHHHHHHhcCccc---------c
Confidence 2233434322211 112223334444444444444 23455799999999998877777543322 6
Q ss_pred eEEEeecccc
Q 017435 227 KGIMVGNAVT 236 (371)
Q Consensus 227 kGi~igng~~ 236 (371)
.++++..|..
T Consensus 170 aa~A~VAg~~ 179 (312)
T COG3509 170 AAIAPVAGLL 179 (312)
T ss_pred cceeeeeccc
Confidence 6666666655
No 72
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=95.94 E-value=0.037 Score=50.52 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcC-CcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 96 PLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNT-EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 96 PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~-~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
+.|+++++|=|.++. |--+.. . ..+ ..++..|+.| |..- ... . ..+-++.|+.
T Consensus 1 ~~lf~~p~~gG~~~~-y~~la~------------~------l~~~~~~v~~i~~~---~~~~-~~~--~-~~si~~la~~ 54 (229)
T PF00975_consen 1 RPLFCFPPAGGSASS-YRPLAR------------A------LPDDVIGVYGIEYP---GRGD-DEP--P-PDSIEELASR 54 (229)
T ss_dssp -EEEEESSTTCSGGG-GHHHHH------------H------HTTTEEEEEEECST---TSCT-TSH--E-ESSHHHHHHH
T ss_pred CeEEEEcCCccCHHH-HHHHHH------------h------CCCCeEEEEEEecC---CCCC-CCC--C-CCCHHHHHHH
Confidence 357889988786665 333321 0 111 3578889988 5541 111 1 2467778888
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
..+.|+ ...| ..|++|+|.|+||..+=.+|.++.++. .....+++.++.
T Consensus 55 y~~~I~---~~~~---~gp~~L~G~S~Gg~lA~E~A~~Le~~G------~~v~~l~liD~~ 103 (229)
T PF00975_consen 55 YAEAIR---ARQP---EGPYVLAGWSFGGILAFEMARQLEEAG------EEVSRLILIDSP 103 (229)
T ss_dssp HHHHHH---HHTS---SSSEEEEEETHHHHHHHHHHHHHHHTT-------SESEEEEESCS
T ss_pred HHHHhh---hhCC---CCCeeehccCccHHHHHHHHHHHHHhh------hccCceEEecCC
Confidence 777776 3555 339999999999999999999998875 448889888864
No 73
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=95.74 E-value=0.056 Score=51.49 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=53.3
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
.+++-+|.| |.|-|-... .+-+...+|+..+++.+-+..|.+ .+++++|+|.||..+-.+|. ..
T Consensus 58 ~~v~~~Dl~-G~G~S~~~~------~~~~~~~~d~~~~~~~l~~~~~g~--~~i~l~G~S~Gg~~a~~~a~----~~--- 121 (274)
T TIGR03100 58 FPVLRFDYR-GMGDSEGEN------LGFEGIDADIAAAIDAFREAAPHL--RRIVAWGLCDAASAALLYAP----AD--- 121 (274)
T ss_pred CEEEEeCCC-CCCCCCCCC------CCHHHHHHHHHHHHHHHHhhCCCC--CcEEEEEECHHHHHHHHHhh----hC---
Confidence 689999988 666654211 133445677777777655555544 35999999999975544442 11
Q ss_pred CCceeeeEEEeeccccCcc
Q 017435 221 KHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 221 ~~~inLkGi~igng~~d~~ 239 (371)
-.++|+++.||++...
T Consensus 122 ---~~v~~lil~~p~~~~~ 137 (274)
T TIGR03100 122 ---LRVAGLVLLNPWVRTE 137 (274)
T ss_pred ---CCccEEEEECCccCCc
Confidence 2399999999987643
No 74
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=95.70 E-value=0.087 Score=51.91 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=71.7
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcC-CeEEccCCCcee-eCCCCCcCCcceEEeecccc--cc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIG-PFRINKTASGLY-LNKLSWNTEANLLFLETPAG--VG 153 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~G-P~~~~~~~~~l~-~n~~sW~~~anll~iD~PvG--tG 153 (371)
+..++|.-+... +...+|.||++||=.|.+-.. ...+.+ |=.+. .+. ....--.+...|+-+|.| | .|
T Consensus 15 ~~~~~y~~~g~~-~~~~~~~vll~Hg~~~~~~~~--~~~~~~~~~~w~----~~~~~~~~l~~~~~~vi~~D~~-G~~~g 86 (351)
T TIGR01392 15 DVRVAYETYGTL-NAERSNAVLVCHALTGDAHVA--GYHDDGDPGWWD----DLIGPGRAIDTDRYFVVCSNVL-GGCYG 86 (351)
T ss_pred CceEEEEecccc-CCCCCCEEEEcCCcCcchhhc--ccCCCCCCCchh----hccCCCCCcCCCceEEEEecCC-CCCCC
Confidence 567888754321 123468999999887765331 000000 00000 000 000111244689999988 4 33
Q ss_pred cccccC--CCC------CCCCCcHHHHHHHHHHHHHHHHhCCCCCCCC-eEEEcccccccchHHHHHHHHHhccCCCCce
Q 017435 154 FSYTNR--SSD------LLDTGDGRTAKDSLQFLIRWIDRFPRYKGRE-VYLTGESYAGHYVPQLAREIMIHNSKSKHPI 224 (371)
Q Consensus 154 fSy~~~--~~~------~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~-~yi~GESYgG~yvP~la~~i~~~n~~~~~~i 224 (371)
-|-... ... ....+.+..++++..+++. . .-.+ ++|+|+|+||..+-.+|..-.+.
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l---~~~~~~~l~G~S~Gg~ia~~~a~~~p~~-------- 151 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDH----L---GIEQIAAVVGGSMGGMQALEWAIDYPER-------- 151 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHH----c---CCCCceEEEEECHHHHHHHHHHHHChHh--------
Confidence 221100 000 0012445556666666653 2 2335 99999999998888887654332
Q ss_pred eeeEEEeecccc
Q 017435 225 NLKGIMVGNAVT 236 (371)
Q Consensus 225 nLkGi~igng~~ 236 (371)
++++++.++..
T Consensus 152 -v~~lvl~~~~~ 162 (351)
T TIGR01392 152 -VRAIVVLATSA 162 (351)
T ss_pred -hheEEEEccCC
Confidence 88888888754
No 75
>PRK10162 acetyl esterase; Provisional
Probab=95.60 E-value=0.041 Score=53.80 Aligned_cols=65 Identities=6% Similarity=-0.007 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
.+.+.+.++.+.-+++. ....+++|+|+|.||+.+..+|..+.+... .+..++|+++..|++|..
T Consensus 134 D~~~a~~~l~~~~~~~~-~d~~~i~l~G~SaGG~la~~~a~~~~~~~~---~~~~~~~~vl~~p~~~~~ 198 (318)
T PRK10162 134 EIVAVCCYFHQHAEDYG-INMSRIGFAGDSAGAMLALASALWLRDKQI---DCGKVAGVLLWYGLYGLR 198 (318)
T ss_pred HHHHHHHHHHHhHHHhC-CChhHEEEEEECHHHHHHHHHHHHHHhcCC---CccChhheEEECCccCCC
Confidence 34444444444333331 234579999999999999998877755421 124578999999988853
No 76
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=95.47 E-value=0.011 Score=53.73 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=60.8
Q ss_pred CcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 140 EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
=..|+.+|.+.+.||+..-...... ..-....+|+..+++..-++. ......+.|+|.||||+.+-.++.. ..
T Consensus 14 Gy~v~~~~~rGs~g~g~~~~~~~~~-~~~~~~~~D~~~~i~~l~~~~-~iD~~ri~i~G~S~GG~~a~~~~~~---~~-- 86 (213)
T PF00326_consen 14 GYAVLVPNYRGSGGYGKDFHEAGRG-DWGQADVDDVVAAIEYLIKQY-YIDPDRIGIMGHSYGGYLALLAATQ---HP-- 86 (213)
T ss_dssp T-EEEEEE-TTSSSSHHHHHHTTTT-GTTHHHHHHHHHHHHHHHHTT-SEEEEEEEEEEETHHHHHHHHHHHH---TC--
T ss_pred CEEEEEEcCCCCCccchhHHHhhhc-cccccchhhHHHHHHHHhccc-cccceeEEEEcccccccccchhhcc---cc--
Confidence 3578999999888877642221111 123456777777776554444 5556789999999999977766652 21
Q ss_pred CCCceeeeEEEeeccccCcccccc
Q 017435 220 SKHPINLKGIMVGNAVTDNYYDNL 243 (371)
Q Consensus 220 ~~~~inLkGi~igng~~d~~~~~~ 243 (371)
-.++.++.++|.+|+.....
T Consensus 87 ----~~f~a~v~~~g~~d~~~~~~ 106 (213)
T PF00326_consen 87 ----DRFKAAVAGAGVSDLFSYYG 106 (213)
T ss_dssp ----CGSSEEEEESE-SSTTCSBH
T ss_pred ----eeeeeeeccceecchhcccc
Confidence 23799999999999876543
No 77
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=95.30 E-value=0.12 Score=49.48 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=80.8
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCC----CCCCCCcHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSS----DLLDTGDGR 170 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~----~~~~~~~~~ 170 (371)
+++++|+-|-||.-.. |--|.+ .|..+- +....++=+... ||+...... +....+.++
T Consensus 2 ~~li~~IPGNPGlv~f-Y~~Fl~-----------~L~~~l---~~~~~i~~ish~---Gh~~~~~~~~~~~~~~~~sL~~ 63 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEF-YEEFLS-----------ALYEKL---NPQFEILGISHA---GHSTSPSNSKFSPNGRLFSLQD 63 (266)
T ss_pred cEEEEEECCCCChHHH-HHHHHH-----------HHHHhC---CCCCeeEEecCC---CCcCCcccccccCCCCccCHHH
Confidence 5799999999999998 566653 232221 456677777765 777755441 112358889
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+.+.-.+||+++....+ ..+.+++|.|||-|+ +++.+++++... ...+++++++.=|.+..
T Consensus 64 QI~hk~~~i~~~~~~~~-~~~~~liLiGHSIGa----yi~levl~r~~~--~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 64 QIEHKIDFIKELIPQKN-KPNVKLILIGHSIGA----YIALEVLKRLPD--LKFRVKKVILLFPTIED 124 (266)
T ss_pred HHHHHHHHHHHHhhhhc-CCCCcEEEEeCcHHH----HHHHHHHHhccc--cCCceeEEEEeCCcccc
Confidence 99999999999888764 236789999999986 456666665431 12567777666665543
No 78
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=95.22 E-value=0.25 Score=49.97 Aligned_cols=133 Identities=18% Similarity=0.299 Sum_probs=78.8
Q ss_pred EeEEEecCCCCceEEEEEEeecC----CCCCCCeEEEeCCCCCchhhh-----hhhhhhcCCeEEccCCCceeeCCCCCc
Q 017435 68 SGYVPVNKVPGRALFYWLTEATH----NPLNKPLVVWLNGGPGCSSVA-----YGASEEIGPFRINKTASGLYLNKLSWN 138 (371)
Q Consensus 68 sGyl~v~~~~~~~lfy~f~es~~----~~~~~PlvlwlnGGPG~Ss~~-----~g~~~e~GP~~~~~~~~~l~~n~~sW~ 138 (371)
.-+|+..+. |.-..=|+..... +..++|+||.+.|=.|.|.-. .....+.| +++ ++.|
T Consensus 95 Reii~~~DG-G~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G-~r~------VVfN----- 161 (409)
T KOG1838|consen 95 REIIKTSDG-GTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKG-YRV------VVFN----- 161 (409)
T ss_pred eEEEEeCCC-CEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCC-cEE------EEEC-----
Confidence 334444431 3334445543322 246889999999999988521 13344555 332 2222
Q ss_pred CCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhcc
Q 017435 139 TEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNS 218 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~ 218 (371)
+-|-|-|--++..-|. .+..+.-+.+.++++ ++|| ..++|.+|.|+||.. +.+++-+..+
T Consensus 162 ----------~RG~~g~~LtTpr~f~-ag~t~Dl~~~v~~i~---~~~P---~a~l~avG~S~Gg~i---L~nYLGE~g~ 221 (409)
T KOG1838|consen 162 ----------HRGLGGSKLTTPRLFT-AGWTEDLREVVNHIK---KRYP---QAPLFAVGFSMGGNI---LTNYLGEEGD 221 (409)
T ss_pred ----------CCCCCCCccCCCceee-cCCHHHHHHHHHHHH---HhCC---CCceEEEEecchHHH---HHHHhhhccC
Confidence 5677777766655443 344444444444444 6899 679999999999975 4555555432
Q ss_pred CCCCceeeeEEEeecccc
Q 017435 219 KSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 219 ~~~~~inLkGi~igng~~ 236 (371)
+ .-=..|++|-|||=
T Consensus 222 ~---~~l~~a~~v~~Pwd 236 (409)
T KOG1838|consen 222 N---TPLIAAVAVCNPWD 236 (409)
T ss_pred C---CCceeEEEEeccch
Confidence 2 23367889999984
No 79
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=95.08 E-value=0.064 Score=50.00 Aligned_cols=44 Identities=23% Similarity=0.152 Sum_probs=33.0
Q ss_pred HhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 184 DRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 184 ~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
........+.+|++|.|-||.....|+....+. +.++++.+|..
T Consensus 89 ~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~---------faa~a~~sG~~ 132 (220)
T PF10503_consen 89 AARYNIDPSRVYVTGLSNGGMMANVLACAYPDL---------FAAVAVVSGVP 132 (220)
T ss_pred hhhcccCCCceeeEEECHHHHHHHHHHHhCCcc---------ceEEEeecccc
Confidence 333356677899999999998888777655443 78888888863
No 80
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=94.80 E-value=0.047 Score=45.61 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=57.2
Q ss_pred eEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHH
Q 017435 97 LVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSL 176 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~ 176 (371)
+||+++|+.|.... +..+.+ .+.. +-.+++.+|.| |.|-+ .....+++++
T Consensus 1 ~vv~~HG~~~~~~~-~~~~~~-----------~l~~------~G~~v~~~~~~-~~~~~-----------~~~~~~~~~~ 50 (145)
T PF12695_consen 1 VVVLLHGWGGSRRD-YQPLAE-----------ALAE------QGYAVVAFDYP-GHGDS-----------DGADAVERVL 50 (145)
T ss_dssp EEEEECTTTTTTHH-HHHHHH-----------HHHH------TTEEEEEESCT-TSTTS-----------HHSHHHHHHH
T ss_pred CEEEECCCCCCHHH-HHHHHH-----------HHHH------CCCEEEEEecC-CCCcc-----------chhHHHHHHH
Confidence 58999999887655 344432 1111 12467777876 32322 1112344444
Q ss_pred HHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 177 QFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 177 ~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+.+. ..++ ..++++|+|+|.||..+..++.+- . .+++++..+|+.
T Consensus 51 ~~~~---~~~~--~~~~i~l~G~S~Gg~~a~~~~~~~----~------~v~~~v~~~~~~ 95 (145)
T PF12695_consen 51 ADIR---AGYP--DPDRIILIGHSMGGAIAANLAARN----P------RVKAVVLLSPYP 95 (145)
T ss_dssp HHHH---HHHC--TCCEEEEEEETHHHHHHHHHHHHS----T------TESEEEEESESS
T ss_pred HHHH---hhcC--CCCcEEEEEEccCcHHHHHHhhhc----c------ceeEEEEecCcc
Confidence 4333 3333 457899999999999777777622 2 389999999853
No 81
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=94.58 E-value=0.021 Score=57.71 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=52.1
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
-+||-||-| |||+|... . +. +....++..+..|+..-|+.....+.++|-|.||.|++.+|.. +.
T Consensus 219 iA~LtvDmP-G~G~s~~~-~--l~-----~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~l--e~---- 283 (411)
T PF06500_consen 219 IAMLTVDMP-GQGESPKW-P--LT-----QDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAAL--ED---- 283 (411)
T ss_dssp -EEEEE--T-TSGGGTTT----S------S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHH--TT----
T ss_pred CEEEEEccC-CCcccccC-C--CC-----cCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHh--cc----
Confidence 479999999 99998421 1 11 1123455566667778999988899999999999999999852 22
Q ss_pred CCceeeeEEEeeccccCcc
Q 017435 221 KHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 221 ~~~inLkGi~igng~~d~~ 239 (371)
-.|||++.-.|.++..
T Consensus 284 ---~RlkavV~~Ga~vh~~ 299 (411)
T PF06500_consen 284 ---PRLKAVVALGAPVHHF 299 (411)
T ss_dssp ---TT-SEEEEES---SCG
T ss_pred ---cceeeEeeeCchHhhh
Confidence 1299987766655443
No 82
>PLN02872 triacylglycerol lipase
Probab=94.43 E-value=0.27 Score=49.76 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=69.1
Q ss_pred CcceEEeEEEecCCCCceEEEEEEeecC---CCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCc-
Q 017435 63 SFQQFSGYVPVNKVPGRALFYWLTEATH---NPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWN- 138 (371)
Q Consensus 63 ~~~~~sGyl~v~~~~~~~lfy~f~es~~---~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~- 138 (371)
.++.+.-+|+..+ |-.|-.+-++... .+..+|.||.+||..++|..+ ..- +|-. .+ .+-..
T Consensus 41 gy~~e~h~v~T~D--Gy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w-~~~---~~~~------sl---a~~La~ 105 (395)
T PLN02872 41 GYSCTEHTIQTKD--GYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAW-FLN---SPEQ------SL---GFILAD 105 (395)
T ss_pred CCCceEEEEECCC--CcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccce-eec---Cccc------ch---HHHHHh
Confidence 3556677777765 4444444333221 234578999999998888763 211 1200 00 00011
Q ss_pred CCcceEEeecccccccccccCC-----CCCCCCCcHHHH-HHHHHHHHHHHHhCCCCCCCCeEEEcccccccch
Q 017435 139 TEANLLFLETPAGVGFSYTNRS-----SDLLDTGDGRTA-KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYV 206 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~-----~~~~~~~~~~~a-~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yv 206 (371)
+-.++.-.|.. |.|+|+.... ..+-..+-++.| .|+-++++...+.. ..+++++|+|.||..+
T Consensus 106 ~GydV~l~n~R-G~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~----~~~v~~VGhS~Gg~~~ 174 (395)
T PLN02872 106 HGFDVWVGNVR-GTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT----NSKIFIVGHSQGTIMS 174 (395)
T ss_pred CCCCccccccc-ccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc----CCceEEEEECHHHHHH
Confidence 12366667765 7777764221 111012445566 67877777665432 3589999999999654
No 83
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=93.50 E-value=1.5 Score=42.22 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=41.3
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccccccchhh
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLGTVTY 248 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~~~~~~~ 248 (371)
.+++.|+|+|-||+.+..+|...-+... ..+++.++..|++|......++..+
T Consensus 151 p~~i~v~GdSAGG~La~~~a~~~~~~~~-----~~p~~~~li~P~~d~~~~~~~~~~~ 203 (312)
T COG0657 151 PSRIAVAGDSAGGHLALALALAARDRGL-----PLPAAQVLISPLLDLTSSAASLPGY 203 (312)
T ss_pred ccceEEEecCcccHHHHHHHHHHHhcCC-----CCceEEEEEecccCCcccccchhhc
Confidence 5679999999999999999988877521 4588999999999998633333333
No 84
>COG4099 Predicted peptidase [General function prediction only]
Probab=93.36 E-value=1.4 Score=43.01 Aligned_cols=133 Identities=19% Similarity=0.205 Sum_probs=68.7
Q ss_pred CCCceEEEEEEeecC-CCCC--CCeEEEeCCC-CCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccc
Q 017435 76 VPGRALFYWLTEATH-NPLN--KPLVVWLNGG-PGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAG 151 (371)
Q Consensus 76 ~~~~~lfy~f~es~~-~~~~--~PlvlwlnGG-PG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvG 151 (371)
..+..|-|-+|.... +|++ -||||||||+ -|.+-..--+....|-..... --.=.||=.|-
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~--------------pedqcfVlAPQ- 233 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAG--------------PEDQCFVLAPQ- 233 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhhhhcCccceeeec--------------ccCceEEEccc-
Confidence 457889999887643 4433 3999999985 444322111122222222110 00004444451
Q ss_pred cccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEe
Q 017435 152 VGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMV 231 (371)
Q Consensus 152 tGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~i 231 (371)
|+--=+.++- ....--....+.+.+-+..++....+.+|++|-|-||.-.=+++.+..+- +.+.+.
T Consensus 234 --y~~if~d~e~---~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdf---------FAaa~~ 299 (387)
T COG4099 234 --YNPIFADSEE---KTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDF---------FAAAVP 299 (387)
T ss_pred --cccccccccc---ccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchh---------hheeee
Confidence 2110000110 01111112233334334456777788899999999998877777766554 666666
Q ss_pred eccccC
Q 017435 232 GNAVTD 237 (371)
Q Consensus 232 gng~~d 237 (371)
..|--|
T Consensus 300 iaG~~d 305 (387)
T COG4099 300 IAGGGD 305 (387)
T ss_pred ecCCCc
Confidence 666544
No 85
>PRK11460 putative hydrolase; Provisional
Probab=93.27 E-value=0.32 Score=45.27 Aligned_cols=52 Identities=8% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
+.++++.+.++. .....+++|+|.|.||..+-.++.. ... .+.+++..+|.+
T Consensus 87 l~~~i~~~~~~~-~~~~~~i~l~GfS~Gg~~al~~a~~---~~~------~~~~vv~~sg~~ 138 (232)
T PRK11460 87 FIETVRYWQQQS-GVGASATALIGFSQGAIMALEAVKA---EPG------LAGRVIAFSGRY 138 (232)
T ss_pred HHHHHHHHHHhc-CCChhhEEEEEECHHHHHHHHHHHh---CCC------cceEEEEecccc
Confidence 334444333332 3445679999999999887666542 111 145566666654
No 86
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=93.23 E-value=0.61 Score=43.47 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=77.0
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
.-.|.=|...+++ ++|++|.++|--|-= |.+.- ..+. . =-+=..||+-+|-- |-|-|-+
T Consensus 64 ~vtL~a~~~~~E~---S~pTlLyfh~NAGNm----Ghr~~------i~~~--f-----y~~l~mnv~ivsYR-GYG~S~G 122 (300)
T KOG4391|consen 64 KVTLDAYLMLSES---SRPTLLYFHANAGNM----GHRLP------IARV--F-----YVNLKMNVLIVSYR-GYGKSEG 122 (300)
T ss_pred ceeEeeeeecccC---CCceEEEEccCCCcc----cchhh------HHHH--H-----HHHcCceEEEEEee-ccccCCC
Confidence 3456655555443 889999999765542 22220 0000 0 01224689999976 3333332
Q ss_pred cCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 158 NRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 158 ~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
.... .+...+|+...+ ++...|...+.++++.|.|-||..+-.+|..-.++ +.++++-|-+++
T Consensus 123 spsE----~GL~lDs~avld----yl~t~~~~dktkivlfGrSlGGAvai~lask~~~r---------i~~~ivENTF~S 185 (300)
T KOG4391|consen 123 SPSE----EGLKLDSEAVLD----YLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDR---------ISAIIVENTFLS 185 (300)
T ss_pred Cccc----cceeccHHHHHH----HHhcCccCCcceEEEEecccCCeeEEEeeccchhh---------eeeeeeechhcc
Confidence 2211 133333444333 33578899999999999999999988888765543 889999999887
Q ss_pred cc
Q 017435 238 NY 239 (371)
Q Consensus 238 ~~ 239 (371)
-.
T Consensus 186 Ip 187 (300)
T KOG4391|consen 186 IP 187 (300)
T ss_pred ch
Confidence 63
No 87
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=92.64 E-value=0.43 Score=49.15 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHH
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLA 210 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la 210 (371)
.....++++++-...|. -..+++.|+|+|.||+-+-.++
T Consensus 156 D~~~al~wv~~~i~~fg-gd~~~v~~~G~SaG~~~~~~~~ 194 (493)
T cd00312 156 DQRLALKWVQDNIAAFG-GDPDSVTIFGESAGGASVSLLL 194 (493)
T ss_pred HHHHHHHHHHHHHHHhC-CCcceEEEEeecHHHHHhhhHh
Confidence 44455666666656564 2345799999999997654443
No 88
>PRK11071 esterase YqiA; Provisional
Probab=92.61 E-value=0.12 Score=46.57 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=55.0
Q ss_pred CeEEEeCCCCCchhhhhh-hhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 96 PLVVWLNGGPGCSSVAYG-ASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 96 PlvlwlnGGPG~Ss~~~g-~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
|.||+|||-+|++..... .+.+. +..+ . ...+++.+|-| |+. ++.+++
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~-----------l~~~--~--~~~~v~~~dl~---g~~-------------~~~~~~ 50 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNW-----------LAQH--H--PDIEMIVPQLP---PYP-------------ADAAEL 50 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHH-----------HHHh--C--CCCeEEeCCCC---CCH-------------HHHHHH
Confidence 689999998888765311 11110 0000 0 12356888888 431 123444
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+.++.+.. ..++++|+|.|.||.++-.+|.... .+ +++.||..+|
T Consensus 51 ----l~~l~~~~---~~~~~~lvG~S~Gg~~a~~~a~~~~-----------~~-~vl~~~~~~~ 95 (190)
T PRK11071 51 ----LESLVLEH---GGDPLGLVGSSLGGYYATWLSQCFM-----------LP-AVVVNPAVRP 95 (190)
T ss_pred ----HHHHHHHc---CCCCeEEEEECHHHHHHHHHHHHcC-----------CC-EEEECCCCCH
Confidence 44444443 3468999999999998888886431 12 4667887775
No 89
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=92.36 E-value=0.2 Score=46.90 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
..+.++.+||+...+.. ...+++|.+||.|+..+-..-..+.......+..-.|..|++.+|.+|.+.
T Consensus 74 ~s~~~l~~~L~~L~~~~---~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~ 141 (233)
T PF05990_consen 74 FSGPALARFLRDLARAP---GIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDV 141 (233)
T ss_pred HHHHHHHHHHHHHHhcc---CCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHH
Confidence 34444455554433332 367899999999998888777777665432011146889999999888753
No 90
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=91.83 E-value=0.21 Score=45.73 Aligned_cols=74 Identities=12% Similarity=-0.014 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccccccc------
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLG------ 244 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~~~------ 244 (371)
.++.+.+++....+.. ...++++|.|-|-||...-.++..-. -.+.|++..+|++-+..+...
T Consensus 86 s~~~l~~li~~~~~~~--i~~~ri~l~GFSQGa~~al~~~l~~p---------~~~~gvv~lsG~~~~~~~~~~~~~~~~ 154 (216)
T PF02230_consen 86 SAERLDELIDEEVAYG--IDPSRIFLGGFSQGAAMALYLALRYP---------EPLAGVVALSGYLPPESELEDRPEALA 154 (216)
T ss_dssp HHHHHHHHHHHHHHTT----GGGEEEEEETHHHHHHHHHHHCTS---------STSSEEEEES---TTGCCCHCCHCCCC
T ss_pred HHHHHHHHHHHHHHcC--CChhheehhhhhhHHHHHHHHHHHcC---------cCcCEEEEeeccccccccccccccccC
Confidence 4444555555544332 55678999999999987766664221 348999999998865433221
Q ss_pred chhhhcccccC
Q 017435 245 TVTYWWSHAMI 255 (371)
Q Consensus 245 ~~~~a~~~gli 255 (371)
-.+.++.||--
T Consensus 155 ~~pi~~~hG~~ 165 (216)
T PF02230_consen 155 KTPILIIHGDE 165 (216)
T ss_dssp TS-EEEEEETT
T ss_pred CCcEEEEecCC
Confidence 22455666643
No 91
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=91.54 E-value=0.39 Score=43.14 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHh---CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 170 RTAKDSLQFLIRWIDR---FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~---fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+..+|+..+++-..+. + .+...+++|+|+|-||+.+-.++..+.+... ..++++++..|++|.
T Consensus 47 ~~~~D~~~a~~~l~~~~~~~-~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~-----~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 47 AALEDVKAAYRWLLKNADKL-GIDPERIVLIGDSAGGHLALSLALRARDRGL-----PKPKGIILISPWTDL 112 (211)
T ss_dssp HHHHHHHHHHHHHHHTHHHH-TEEEEEEEEEEETHHHHHHHHHHHHHHHTTT-----CHESEEEEESCHSST
T ss_pred ccccccccceeeeccccccc-cccccceEEeecccccchhhhhhhhhhhhcc-----cchhhhhcccccccc
Confidence 4455555555433333 1 2446689999999999999999988877532 349999999999887
No 92
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=90.54 E-value=0.63 Score=39.01 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
...+.+.+.|++..+++| +..+.|+|||-||-.+..+|..+.++.... ..+++-+..|.|-+
T Consensus 45 ~~~~~~~~~l~~~~~~~~---~~~i~itGHSLGGalA~l~a~~l~~~~~~~--~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 45 SLYDQILDALKELVEKYP---DYSIVITGHSLGGALASLAAADLASHGPSS--SSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHHHST---TSEEEEEEETHHHHHHHHHHHHHHHCTTTS--TTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHHHhccc---CccchhhccchHHHHHHHHHHhhhhccccc--ccceeeeecCCccc
Confidence 455677788888888888 468999999999999999999998865321 25577777777655
No 93
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=90.39 E-value=0.79 Score=39.43 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
..++.+...+++...++| ..+++|+|||.||..+-.+|..+.++
T Consensus 9 ~~~~~i~~~~~~~~~~~p---~~~i~v~GHSlGg~lA~l~a~~~~~~ 52 (153)
T cd00741 9 SLANLVLPLLKSALAQYP---DYKIHVTGHSLGGALAGLAGLDLRGR 52 (153)
T ss_pred HHHHHHHHHHHHHHHHCC---CCeEEEEEcCHHHHHHHHHHHHHHhc
Confidence 345556666666666667 56799999999999999999888765
No 94
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=90.01 E-value=0.76 Score=42.38 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
..+++...+.+..+++| +.+++++|||-||-.+-.+|..+.++.. ..+++.+..|.|-+.
T Consensus 110 ~~~~~~~~~~~~~~~~p---~~~i~vtGHSLGGaiA~l~a~~l~~~~~----~~~i~~~tFg~P~vg 169 (229)
T cd00519 110 LYNQVLPELKSALKQYP---DYKIIVTGHSLGGALASLLALDLRLRGP----GSDVTVYTFGQPRVG 169 (229)
T ss_pred HHHHHHHHHHHHHhhCC---CceEEEEccCHHHHHHHHHHHHHHhhCC----CCceEEEEeCCCCCC
Confidence 34455566666666676 5679999999999999888888876531 145888888887663
No 95
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=89.77 E-value=2 Score=49.44 Aligned_cols=103 Identities=12% Similarity=0.123 Sum_probs=67.8
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
.|.++.++|+.|.+.. |..+.+ .......++-+|.| |+.... .. ..+.++.|++
T Consensus 1068 ~~~l~~lh~~~g~~~~-~~~l~~------------------~l~~~~~v~~~~~~---g~~~~~-~~---~~~l~~la~~ 1121 (1296)
T PRK10252 1068 GPTLFCFHPASGFAWQ-FSVLSR------------------YLDPQWSIYGIQSP---RPDGPM-QT---ATSLDEVCEA 1121 (1296)
T ss_pred CCCeEEecCCCCchHH-HHHHHH------------------hcCCCCcEEEEECC---CCCCCC-CC---CCCHHHHHHH
Confidence 4678899999888776 344331 11233577888988 443221 11 1366778888
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
+...++. ..| ..++.|+|+|+||..+-.+|.++.++. ..+..+++.++.
T Consensus 1122 ~~~~i~~---~~~---~~p~~l~G~S~Gg~vA~e~A~~l~~~~------~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1122 HLATLLE---QQP---HGPYHLLGYSLGGTLAQGIAARLRARG------EEVAFLGLLDTW 1170 (1296)
T ss_pred HHHHHHh---hCC---CCCEEEEEechhhHHHHHHHHHHHHcC------CceeEEEEecCC
Confidence 8877764 233 358999999999999999998886653 236666666553
No 96
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=88.04 E-value=0.72 Score=43.75 Aligned_cols=83 Identities=24% Similarity=0.292 Sum_probs=54.6
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
..+|.+| .-|+|-|-+..... ..+.++|.++.+ +|..+.|- .+-++-++|.||+|.....+|.. +
T Consensus 58 Y~vV~~D-~RG~g~S~G~~~~~-----~~~e~~D~~d~I-~W~~~Qpw-s~G~VGm~G~SY~G~~q~~~A~~---~---- 122 (272)
T PF02129_consen 58 YAVVVQD-VRGTGGSEGEFDPM-----SPNEAQDGYDTI-EWIAAQPW-SNGKVGMYGISYGGFTQWAAAAR---R---- 122 (272)
T ss_dssp -EEEEEE--TTSTTS-S-B-TT-----SHHHHHHHHHHH-HHHHHCTT-EEEEEEEEEETHHHHHHHHHHTT---T----
T ss_pred CEEEEEC-CcccccCCCccccC-----ChhHHHHHHHHH-HHHHhCCC-CCCeEEeeccCHHHHHHHHHHhc---C----
Confidence 4688889 56999887654321 445666666655 46667754 34479999999999887777751 1
Q ss_pred CCceeeeEEEeeccccCccc
Q 017435 221 KHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 221 ~~~inLkGi~igng~~d~~~ 240 (371)
+-.||.|+...+..|...
T Consensus 123 --~p~LkAi~p~~~~~d~~~ 140 (272)
T PF02129_consen 123 --PPHLKAIVPQSGWSDLYR 140 (272)
T ss_dssp ---TTEEEEEEESE-SBTCC
T ss_pred --CCCceEEEecccCCcccc
Confidence 134999999988877654
No 97
>PLN02454 triacylglycerol lipase
Probab=87.92 E-value=1.4 Score=44.88 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
...+.+++...+++..+++|..+ ..++++|||.||-.+-..|..|.+.... ...++++.+..|.|-+..
T Consensus 205 ~~S~r~qvl~~V~~l~~~Yp~~~-~sI~vTGHSLGGALAtLaA~di~~~g~~-~~~~~V~~~TFGsPRVGN 273 (414)
T PLN02454 205 KLSARSQLLAKIKELLERYKDEK-LSIVLTGHSLGASLATLAAFDIVENGVS-GADIPVTAIVFGSPQVGN 273 (414)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC-ceEEEEecCHHHHHHHHHHHHHHHhccc-ccCCceEEEEeCCCcccC
Confidence 34678889999999999998763 3599999999999888888888765321 112567778888887655
No 98
>PRK13604 luxD acyl transferase; Provisional
Probab=87.28 E-value=2.9 Score=40.94 Aligned_cols=123 Identities=11% Similarity=0.134 Sum_probs=69.1
Q ss_pred CceEEEEEEeec-CCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeeccccccccc
Q 017435 78 GRALFYWLTEAT-HNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSY 156 (371)
Q Consensus 78 ~~~lfy~f~es~-~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy 156 (371)
|..|.=|+.+.+ +++...|+||..+| .|+....+..+. .+=+.+=.++|-.|.--|+|=|-
T Consensus 19 G~~L~Gwl~~P~~~~~~~~~~vIi~HG-f~~~~~~~~~~A-----------------~~La~~G~~vLrfD~rg~~GeS~ 80 (307)
T PRK13604 19 GQSIRVWETLPKENSPKKNNTILIASG-FARRMDHFAGLA-----------------EYLSSNGFHVIRYDSLHHVGLSS 80 (307)
T ss_pred CCEEEEEEEcCcccCCCCCCEEEEeCC-CCCChHHHHHHH-----------------HHHHHCCCEEEEecCCCCCCCCC
Confidence 677888877764 34566788888774 444421111111 12223345788888654567663
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 157 TNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
++.. +...+.-...+....++++ +.. ..+++|.|+|.||..+...|. . .+++++++..|+.
T Consensus 81 G~~~-~~t~s~g~~Dl~aaid~lk----~~~---~~~I~LiG~SmGgava~~~A~----~-------~~v~~lI~~sp~~ 141 (307)
T PRK13604 81 GTID-EFTMSIGKNSLLTVVDWLN----TRG---INNLGLIAASLSARIAYEVIN----E-------IDLSFLITAVGVV 141 (307)
T ss_pred Cccc-cCcccccHHHHHHHHHHHH----hcC---CCceEEEEECHHHHHHHHHhc----C-------CCCCEEEEcCCcc
Confidence 3221 1211111223333344443 321 357999999999977433331 1 3488999999998
Q ss_pred C
Q 017435 237 D 237 (371)
Q Consensus 237 d 237 (371)
+
T Consensus 142 ~ 142 (307)
T PRK13604 142 N 142 (307)
T ss_pred c
Confidence 8
No 99
>COG0400 Predicted esterase [General function prediction only]
Probab=87.23 E-value=3.8 Score=37.84 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccc---cc
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYD---NL 243 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~---~~ 243 (371)
+....+..+.+||....+++. ...+++++.|-|-|+.++..+..... -.++|+++-+|..-+..+ ..
T Consensus 75 dl~~~~~~~~~~l~~~~~~~g-i~~~~ii~~GfSqGA~ial~~~l~~~---------~~~~~ail~~g~~~~~~~~~~~~ 144 (207)
T COG0400 75 DLDLETEKLAEFLEELAEEYG-IDSSRIILIGFSQGANIALSLGLTLP---------GLFAGAILFSGMLPLEPELLPDL 144 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHhC-CChhheEEEecChHHHHHHHHHHhCc---------hhhccchhcCCcCCCCCcccccc
Confidence 445567778888888887774 44578999999999987766654332 248888888887766542 22
Q ss_pred cchhhhcccccCC
Q 017435 244 GTVTYWWSHAMIS 256 (371)
Q Consensus 244 ~~~~~a~~~gli~ 256 (371)
.-.+....||--|
T Consensus 145 ~~~pill~hG~~D 157 (207)
T COG0400 145 AGTPILLSHGTED 157 (207)
T ss_pred CCCeEEEeccCcC
Confidence 2344455555433
No 100
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=86.32 E-value=1.6 Score=48.04 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=52.3
Q ss_pred CCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCC--------------CCCCCCeEEEccccccc
Q 017435 139 TEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFP--------------RYKGREVYLTGESYAGH 204 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp--------------~~~~~~~yi~GESYgG~ 204 (371)
+=..++++| ..|+|-|-+.... ...+..+|..+.++ |....+ .+.+-++-++|.||||.
T Consensus 278 rGYaVV~~D-~RGtg~SeG~~~~-----~~~~E~~D~~~vIe-Wl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~ 350 (767)
T PRK05371 278 RGFAVVYVS-GIGTRGSDGCPTT-----GDYQEIESMKAVID-WLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGT 350 (767)
T ss_pred CCeEEEEEc-CCCCCCCCCcCcc-----CCHHHHHHHHHHHH-HHhhCCccccccccccccccCCCCCeeEEEEEcHHHH
Confidence 347899999 4599888764321 22334445444443 555321 13355899999999997
Q ss_pred chHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 205 YVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 205 yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
..-.+|..- . -.||.|+-..|+.|.
T Consensus 351 ~~~~aAa~~---p------p~LkAIVp~a~is~~ 375 (767)
T PRK05371 351 LPNAVATTG---V------EGLETIIPEAAISSW 375 (767)
T ss_pred HHHHHHhhC---C------CcceEEEeeCCCCcH
Confidence 666555321 1 349999988877653
No 101
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=85.86 E-value=1.4 Score=44.67 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 169 GRTAKDSLQFLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
-.+|.|...+|..-..+||..+. .|+.+.|.|||| |...|+.+|.= -.+.||+=-+++.-|.
T Consensus 160 IMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~-yla~l~~k~aP--------~~~~~~iDns~~~~p~ 222 (403)
T PF11144_consen 160 IMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGG-YLAHLCAKIAP--------WLFDGVIDNSSYALPP 222 (403)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHH-HHHHHHHhhCc--------cceeEEEecCccccch
Confidence 36899999999999999999985 799999999987 77777776643 3466666666666653
No 102
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=85.60 E-value=1.4 Score=45.45 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHH
Q 017435 169 GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAR 211 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~ 211 (371)
++..+++.+.+++.+++.+ .+++.|+|||.||.++-.++.
T Consensus 142 ~~~~~~Lk~lIe~~~~~~g---~~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 142 PETMDGLKKKLETVYKASG---GKKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred HHHHHHHHHHHHHHHHHcC---CCCEEEEEECHhHHHHHHHHH
Confidence 4567888889998888765 678999999999987666554
No 103
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=84.76 E-value=6.8 Score=36.40 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEE-EeeccccCcc
Q 017435 169 GRTAKDSLQFLIRWIDRF--PRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGI-MVGNAVTDNY 239 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~f--p~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi-~igng~~d~~ 239 (371)
...++.+.+.++...+.+ ..-..+++.|+|||.||.. ...|....+.. +-.+++| .+|.|...+.
T Consensus 60 ~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlv-ar~~l~~~~~~-----~~~v~~iitl~tPh~g~~ 127 (225)
T PF07819_consen 60 QRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLV-ARSALSLPNYD-----PDSVKTIITLGTPHRGSP 127 (225)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHH-HHHHHhccccc-----cccEEEEEEEcCCCCCcc
Confidence 355666666676666655 2224678999999999963 33222222111 1235555 5666766554
No 104
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=84.36 E-value=2 Score=39.24 Aligned_cols=110 Identities=15% Similarity=0.252 Sum_probs=74.0
Q ss_pred CCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHH
Q 017435 95 KPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKD 174 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~ 174 (371)
|-++|++.|-=|...++ .-+.+ .+...| ..|+=||++ .|--.. -+.+++|.|
T Consensus 2 Dt~~v~~SGDgGw~~~d-~~~a~----~l~~~G-------------~~VvGvdsl-----~Yfw~~-----rtP~~~a~D 53 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLD-KQIAE----ALAKQG-------------VPVVGVDSL-----RYFWSE-----RTPEQTAAD 53 (192)
T ss_pred CEEEEEEeCCCCchhhh-HHHHH----HHHHCC-------------CeEEEechH-----HHHhhh-----CCHHHHHHH
Confidence 45778888766766654 22221 011111 245556654 443222 267899999
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
+-..++.+.++.. .+.+.|+|-|+|.-.+|.+..++...-++ .++++++..+-.....
T Consensus 54 l~~~i~~y~~~w~---~~~vvLiGYSFGADvlP~~~nrLp~~~r~-----~v~~v~Ll~p~~~~dF 111 (192)
T PF06057_consen 54 LARIIRHYRARWG---RKRVVLIGYSFGADVLPFIYNRLPAALRA-----RVAQVVLLSPSTTADF 111 (192)
T ss_pred HHHHHHHHHHHhC---CceEEEEeecCCchhHHHHHhhCCHHHHh-----heeEEEEeccCCcceE
Confidence 9999999888654 78899999999999999999999776442 4888888777554443
No 105
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=84.12 E-value=1.6 Score=44.36 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccccccc
Q 017435 166 TGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLGT 245 (371)
Q Consensus 166 ~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~~~~ 245 (371)
-+.+|+-.|+..|++.+-.++....+.|++++|-||||..+.-+-.+-.+- +.|.+--++.+....++..|
T Consensus 87 Lt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~---------~~ga~ASSapv~a~~df~~y 157 (434)
T PF05577_consen 87 LTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHL---------FDGAWASSAPVQAKVDFWEY 157 (434)
T ss_dssp -SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT----------SEEEEET--CCHCCTTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCe---------eEEEEeccceeeeecccHHH
Confidence 478999999999999988778766778999999999998666555444332 66777777777666555444
Q ss_pred hh
Q 017435 246 VT 247 (371)
Q Consensus 246 ~~ 247 (371)
.+
T Consensus 158 ~~ 159 (434)
T PF05577_consen 158 FE 159 (434)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 106
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=84.05 E-value=1.2 Score=40.51 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccccc
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDN 242 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~ 242 (371)
...+.|+|.|.||-|+-.+|.+. +++. ++.||.+.|....
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~-----------~~~a-vLiNPav~p~~~l 97 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERY-----------GLPA-VLINPAVRPYELL 97 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHh-----------CCCE-EEEcCCCCHHHHH
Confidence 44599999999999999988644 3555 7889999997543
No 107
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.93 E-value=8.3 Score=36.82 Aligned_cols=104 Identities=15% Similarity=0.182 Sum_probs=66.6
Q ss_pred CeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHH
Q 017435 96 PLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDS 175 (371)
Q Consensus 96 PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~ 175 (371)
|.+++++++=|.-...-.+..+++|- .-++-++.| ||--. .... .+.++.|+..
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~-------------------~~v~~l~a~---g~~~~--~~~~--~~l~~~a~~y 54 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPL-------------------LPVYGLQAP---GYGAG--EQPF--ASLDDMAAAY 54 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccC-------------------ceeeccccC---ccccc--cccc--CCHHHHHHHH
Confidence 67889998766543211222333332 245667777 43321 1112 3567777777
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 176 LQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 176 ~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
.+.|+ +..|+ -|.+|.|.|+||..+=.+|.++..+-+. ..-++|.+....
T Consensus 55 v~~Ir---~~QP~---GPy~L~G~S~GG~vA~evA~qL~~~G~~------Va~L~llD~~~~ 104 (257)
T COG3319 55 VAAIR---RVQPE---GPYVLLGWSLGGAVAFEVAAQLEAQGEE------VAFLGLLDAVPP 104 (257)
T ss_pred HHHHH---HhCCC---CCEEEEeeccccHHHHHHHHHHHhCCCe------EEEEEEeccCCC
Confidence 77776 57884 4999999999999999999999887643 555666665554
No 108
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=83.16 E-value=1.5 Score=40.45 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
-+-.|+..+.+.|++.++ ++|||+|+|||-|+..+-.|-++-.+
T Consensus 75 ~ay~DV~~AF~~yL~~~n--~GRPfILaGHSQGs~~l~~LL~e~~~ 118 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYN--NGRPFILAGHSQGSMHLLRLLKEEIA 118 (207)
T ss_pred hhHHHHHHHHHHHHHhcC--CCCCEEEEEeChHHHHHHHHHHHHhc
Confidence 355677888888888887 48999999999999876665554433
No 109
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=82.72 E-value=6.4 Score=34.25 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=47.5
Q ss_pred CcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 140 EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
..+++.+|.| |+...... ..+.+..++.....+. ...+ ..++.++|+|+||..+-.+|..+.++..
T Consensus 25 ~~~v~~~~~~---g~~~~~~~----~~~~~~~~~~~~~~l~---~~~~---~~~~~l~g~s~Gg~~a~~~a~~l~~~~~- 90 (212)
T smart00824 25 RRDVSALPLP---GFGPGEPL----PASADALVEAQAEAVL---RAAG---GRPFVLVGHSSGGLLAHAVAARLEARGI- 90 (212)
T ss_pred CccEEEecCC---CCCCCCCC----CCCHHHHHHHHHHHHH---HhcC---CCCeEEEEECHHHHHHHHHHHHHHhCCC-
Confidence 4578889977 44322111 1234445555554444 2333 4689999999999999999988876532
Q ss_pred CCCceeeeEEEeecc
Q 017435 220 SKHPINLKGIMVGNA 234 (371)
Q Consensus 220 ~~~~inLkGi~igng 234 (371)
.++++++.++
T Consensus 91 -----~~~~l~~~~~ 100 (212)
T smart00824 91 -----PPAAVVLLDT 100 (212)
T ss_pred -----CCcEEEEEcc
Confidence 2666666554
No 110
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.31 E-value=1.7 Score=41.29 Aligned_cols=43 Identities=21% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhc
Q 017435 166 TGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHN 217 (371)
Q Consensus 166 ~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n 217 (371)
.+.+++.+.=++|++++. | +++++||.|||-|. ++..+|+..+
T Consensus 89 fsL~~QV~HKlaFik~~~---P--k~~ki~iiGHSiGa----Ym~Lqil~~~ 131 (301)
T KOG3975|consen 89 FSLQDQVDHKLAFIKEYV---P--KDRKIYIIGHSIGA----YMVLQILPSI 131 (301)
T ss_pred cchhhHHHHHHHHHHHhC---C--CCCEEEEEecchhH----HHHHHHhhhc
Confidence 467778888888988754 3 47789999999874 5666666654
No 111
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=82.30 E-value=1.8 Score=42.89 Aligned_cols=92 Identities=21% Similarity=0.222 Sum_probs=54.0
Q ss_pred CCCCCCeEEEeCCCCCchhhhhhhhhhc-CCeEEccCCCceeeCCCCCc-----CCcceEEeecccccccccccCCCCCC
Q 017435 91 NPLNKPLVVWLNGGPGCSSVAYGASEEI-GPFRINKTASGLYLNKLSWN-----TEANLLFLETPAGVGFSYTNRSSDLL 164 (371)
Q Consensus 91 ~~~~~PlvlwlnGGPG~Ss~~~g~~~e~-GP~~~~~~~~~l~~n~~sW~-----~~anll~iD~PvGtGfSy~~~~~~~~ 164 (371)
+++++--+|+.||- |.++|. .= +......|. ..+|++...-| |||+|.+..+.
T Consensus 133 ~a~~~RWiL~s~GN--------g~~~E~~~~---------~~~~~~~~~~~ak~~~aNvl~fNYp-GVg~S~G~~s~--- 191 (365)
T PF05677_consen 133 EAKPQRWILVSNGN--------GECYENRAM---------LDYKDDWIQRFAKELGANVLVFNYP-GVGSSTGPPSR--- 191 (365)
T ss_pred CCCCCcEEEEEcCC--------hHHhhhhhh---------hccccHHHHHHHHHcCCcEEEECCC-ccccCCCCCCH---
Confidence 56778899999975 333332 00 001112333 35899999977 99999654321
Q ss_pred CCCcHHHHHHHHHHHHHHHHhCC-CCCCCCeEEEcccccccchHH
Q 017435 165 DTGDGRTAKDSLQFLIRWIDRFP-RYKGREVYLTGESYAGHYVPQ 208 (371)
Q Consensus 165 ~~~~~~~a~~~~~fL~~f~~~fp-~~~~~~~yi~GESYgG~yvP~ 208 (371)
.+..++++...++ +...+ --+.+++.+-|+|-||-....
T Consensus 192 -~dLv~~~~a~v~y----L~d~~~G~ka~~Ii~yG~SLGG~Vqa~ 231 (365)
T PF05677_consen 192 -KDLVKDYQACVRY----LRDEEQGPKAKNIILYGHSLGGGVQAE 231 (365)
T ss_pred -HHHHHHHHHHHHH----HHhcccCCChheEEEeeccccHHHHHH
Confidence 1233344444444 43333 235578999999999976443
No 112
>PLN02571 triacylglycerol lipase
Probab=81.64 E-value=4.2 Score=41.45 Aligned_cols=69 Identities=9% Similarity=0.151 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC-----CCceeeeEEEeeccccCc
Q 017435 169 GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS-----KHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~-----~~~inLkGi~igng~~d~ 238 (371)
..+.++++..|+.+.+++|.. ..+++++|||.||-.+-..|..|....-.. ...+++..+..|.|-+..
T Consensus 204 ~Sar~qvl~eV~~L~~~y~~e-~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~~~~~~~~~~V~v~TFGsPRVGN 277 (413)
T PLN02571 204 TSARDQVLNEVGRLVEKYKDE-EISITICGHSLGAALATLNAVDIVANGFNRSKSRPNKSCPVTAFVFASPRVGD 277 (413)
T ss_pred hhHHHHHHHHHHHHHHhcCcc-cccEEEeccchHHHHHHHHHHHHHHhcccccccccccCcceEEEEeCCCCccC
Confidence 345678888899988888865 347999999999999988888887632110 112567778888876654
No 113
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=81.39 E-value=0.8 Score=42.38 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=53.2
Q ss_pred cccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEE
Q 017435 150 AGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGI 229 (371)
Q Consensus 150 vGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi 229 (371)
+-|||.+++... +.+++..++.++++--|+.+|.-+ .+-+.|||-|.|.+..+..++-+ -.+.|+
T Consensus 101 asvgY~l~~q~h-----tL~qt~~~~~~gv~filk~~~n~k--~l~~gGHSaGAHLa~qav~R~r~--------prI~gl 165 (270)
T KOG4627|consen 101 ASVGYNLCPQVH-----TLEQTMTQFTHGVNFILKYTENTK--VLTFGGHSAGAHLAAQAVMRQRS--------PRIWGL 165 (270)
T ss_pred EEeccCcCcccc-----cHHHHHHHHHHHHHHHHHhcccce--eEEEcccchHHHHHHHHHHHhcC--------chHHHH
Confidence 456888875442 567888889999888888887543 48999999998876666555322 347777
Q ss_pred EeeccccCcc
Q 017435 230 MVGNAVTDNY 239 (371)
Q Consensus 230 ~igng~~d~~ 239 (371)
++-.|+-+-.
T Consensus 166 ~l~~GvY~l~ 175 (270)
T KOG4627|consen 166 ILLCGVYDLR 175 (270)
T ss_pred HHHhhHhhHH
Confidence 7777775543
No 114
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=81.25 E-value=4 Score=41.49 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=40.3
Q ss_pred CcceEEee-------cccccccccccCCC-CCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHH
Q 017435 140 EANLLFLE-------TPAGVGFSYTNRSS-DLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQL 209 (371)
Q Consensus 140 ~anll~iD-------~PvGtGfSy~~~~~-~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~l 209 (371)
.|-|||+| +|.|.- ||.+... .| .+.+|+-.|+.++|+ ++++..-=...|++.+|-||||+..+-+
T Consensus 111 ~AllVFaEHRyYGeS~PFG~~-s~k~~~hlgy--LtseQALADfA~ll~-~lK~~~~a~~~pvIafGGSYGGMLaAWf 184 (492)
T KOG2183|consen 111 KALLVFAEHRYYGESLPFGSQ-SYKDARHLGY--LTSEQALADFAELLT-FLKRDLSAEASPVIAFGGSYGGMLAAWF 184 (492)
T ss_pred CceEEEeehhccccCCCCcch-hccChhhhcc--ccHHHHHHHHHHHHH-HHhhccccccCcEEEecCchhhHHHHHH
Confidence 35677777 576666 5533221 23 355666666665554 5555544446699999999999654443
No 115
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=79.95 E-value=6 Score=43.66 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHHHHHHH------H---hCCCCCCCCeEEEcccccccchHHHHH
Q 017435 167 GDGRTAKDSLQFLIRWI------D---RFPRYKGREVYLTGESYAGHYVPQLAR 211 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~------~---~fp~~~~~~~yi~GESYgG~yvP~la~ 211 (371)
+-.+.+.|++......- . .+..+...++++.|||.||..+..++.
T Consensus 521 n~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 521 NLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred CHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHH
Confidence 45677777776655432 1 133355779999999999998888874
No 116
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=79.87 E-value=3.7 Score=40.36 Aligned_cols=55 Identities=11% Similarity=-0.085 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
.++..+++...++.+ ..+++++|+|+||..+-.++..-.+ .++++++.++.++..
T Consensus 120 ~~~~~~v~~l~~~~~---~~~i~lvGhS~GG~i~~~~~~~~~~---------~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 120 GYIDKCVDYICRTSK---LDQISLLGICQGGTFSLCYAALYPD---------KIKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHHHHhC---CCcccEEEECHHHHHHHHHHHhCch---------heeeEEEeccccccC
Confidence 345555555555554 5689999999999876655542211 278888888877754
No 117
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=79.63 E-value=2.7 Score=42.46 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCCCCeE-EEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 166 TGDGRTAKDSLQFLIRWIDRFPRYKGREVY-LTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 166 ~~~~~~a~~~~~fL~~f~~~fp~~~~~~~y-i~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.+..+.++++..+|+. +.-.++. ++|+|+||..+-.+|.+-.+. ++++++.++.
T Consensus 141 ~t~~d~~~~~~~ll~~-------lgi~~~~~vvG~SmGG~ial~~a~~~P~~---------v~~lv~ia~~ 195 (389)
T PRK06765 141 VTILDFVRVQKELIKS-------LGIARLHAVMGPSMGGMQAQEWAVHYPHM---------VERMIGVIGN 195 (389)
T ss_pred CcHHHHHHHHHHHHHH-------cCCCCceEEEEECHHHHHHHHHHHHChHh---------hheEEEEecC
Confidence 3555566666666653 2344665 999999999988888776664 7777777653
No 118
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=79.51 E-value=15 Score=37.49 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 192 REVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 192 ~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
....|+|.|+||.-.-.+|..-.+. +.+++..+|.+
T Consensus 288 ~~~~IaG~S~GGl~AL~~al~~Pd~---------Fg~v~s~Sgs~ 323 (411)
T PRK10439 288 DRTVVAGQSFGGLAALYAGLHWPER---------FGCVLSQSGSF 323 (411)
T ss_pred cceEEEEEChHHHHHHHHHHhCccc---------ccEEEEeccce
Confidence 3589999999998766666443332 77788888754
No 119
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=78.26 E-value=37 Score=33.06 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=61.5
Q ss_pred CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHHH
Q 017435 93 LNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTA 172 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a 172 (371)
....+|+=++|-||+-== |--+=|...+ .--.++=|.-| ||..+....+.. .+.++-+
T Consensus 33 s~~gTVv~~hGsPGSH~D----FkYi~~~l~~--------------~~iR~I~iN~P---Gf~~t~~~~~~~-~~n~er~ 90 (297)
T PF06342_consen 33 SPLGTVVAFHGSPGSHND----FKYIRPPLDE--------------AGIRFIGINYP---GFGFTPGYPDQQ-YTNEERQ 90 (297)
T ss_pred CCceeEEEecCCCCCccc----hhhhhhHHHH--------------cCeEEEEeCCC---CCCCCCCCcccc-cChHHHH
Confidence 445589999999998631 1111111111 11235667778 777655444332 2333344
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.|...++++- +.+ ..+.+.|||-|+--+-.+|... .+.|+++.||.
T Consensus 91 ----~~~~~ll~~l-~i~-~~~i~~gHSrGcenal~la~~~-----------~~~g~~lin~~ 136 (297)
T PF06342_consen 91 ----NFVNALLDEL-GIK-GKLIFLGHSRGCENALQLAVTH-----------PLHGLVLINPP 136 (297)
T ss_pred ----HHHHHHHHHc-CCC-CceEEEEeccchHHHHHHHhcC-----------ccceEEEecCC
Confidence 4455555543 343 5688889999998777777533 37799999984
No 120
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=77.47 E-value=0.66 Score=45.89 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=48.1
Q ss_pred CCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 139 TEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
.-.||+.||.-.+..-.|... ..+...+++.+..||......+ .+...+++|+|+|.|+|.+-.+++++..
T Consensus 103 ~d~NVI~VDWs~~a~~~Y~~a-----~~n~~~vg~~la~~l~~L~~~~-g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 103 GDYNVIVVDWSRGASNNYPQA-----VANTRLVGRQLAKFLSFLINNF-GVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp S-EEEEEEE-HHHHSS-HHHH-----HHHHHHHHHHHHHHHHHHHHHH----GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred CCceEEEEcchhhccccccch-----hhhHHHHHHHHHHHHHHHHhhc-CCChhHEEEEeeccchhhhhhhhhhccC
Confidence 357999999876665544321 1245667888888887766442 2335689999999999998888888766
No 121
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=75.09 E-value=6.3 Score=40.96 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccccccc--ch
Q 017435 169 GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLG--TV 246 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~~~--~~ 246 (371)
.+++.---..++.||.+-|++ -|..|.|=||+-.-..|++..+. ++||+.|.|.++....... +.
T Consensus 96 h~~~~~aK~l~~~~Yg~~p~~----sY~~GcS~GGRqgl~~AQryP~d---------fDGIlAgaPA~~~~~~~~~~~~~ 162 (474)
T PF07519_consen 96 HETTVVAKALIEAFYGKAPKY----SYFSGCSTGGRQGLMAAQRYPED---------FDGILAGAPAINWTHLQLAHAWP 162 (474)
T ss_pred HHHHHHHHHHHHHHhCCCCCc----eEEEEeCCCcchHHHHHHhChhh---------cCeEEeCCchHHHHHHHHHhhhh
Confidence 344444456778999998866 59999999999999999988876 9999999999987543221 11
Q ss_pred hhh-c--ccccCCHHHHHHH----Hhhccc
Q 017435 247 TYW-W--SHAMISDKTYQQL----INTCDF 269 (371)
Q Consensus 247 ~~a-~--~~gli~~~~~~~~----~~~C~~ 269 (371)
..+ . ....++..+++.+ .++|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~avl~~CD~ 192 (474)
T PF07519_consen 163 AQVMYPDPGGYLSPCKLDLIHAAVLAACDA 192 (474)
T ss_pred hhhhccCCCCCCCHHHHHHHHHHHHHhccc
Confidence 111 1 1356777776654 456764
No 122
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=74.42 E-value=12 Score=35.77 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=68.5
Q ss_pred CCCCCCeEEEeCCCCCchh-hhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcH
Q 017435 91 NPLNKPLVVWLNGGPGCSS-VAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDG 169 (371)
Q Consensus 91 ~~~~~PlvlwlnGGPG~Ss-~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~ 169 (371)
.....+.+|+.+|--.--+ | ..+|.+. +=.=..|++=.|-- |-|.|-++... .+.-
T Consensus 56 ~~~~~~~lly~hGNa~Dlgq~-~~~~~~l-----------------~~~ln~nv~~~DYS-GyG~S~G~psE----~n~y 112 (258)
T KOG1552|consen 56 PEAAHPTLLYSHGNAADLGQM-VELFKEL-----------------SIFLNCNVVSYDYS-GYGRSSGKPSE----RNLY 112 (258)
T ss_pred ccccceEEEEcCCcccchHHH-HHHHHHH-----------------hhcccceEEEEecc-cccccCCCccc----ccch
Confidence 3344699999998621111 2 1333322 22223577778854 77777654432 3566
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
...+..++.|++ ++- +..+++|+|.|-|..-.-.+| .+ -.+.|+++-+|+++-..
T Consensus 113 ~Di~avye~Lr~---~~g--~~~~Iil~G~SiGt~~tv~La----sr-------~~~~alVL~SPf~S~~r 167 (258)
T KOG1552|consen 113 ADIKAVYEWLRN---RYG--SPERIILYGQSIGTVPTVDLA----SR-------YPLAAVVLHSPFTSGMR 167 (258)
T ss_pred hhHHHHHHHHHh---hcC--CCceEEEEEecCCchhhhhHh----hc-------CCcceEEEeccchhhhh
Confidence 778888888885 331 467899999999964322222 22 22999999999987654
No 123
>PF03283 PAE: Pectinacetylesterase
Probab=73.84 E-value=20 Score=35.87 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=75.4
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhh---hhhhhhcCCeE-----EccCC---CceeeCCCCCcCCcceEEe
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVA---YGASEEIGPFR-----INKTA---SGLYLNKLSWNTEANLLFL 146 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~---~g~~~e~GP~~-----~~~~~---~~l~~n~~sW~~~anll~i 146 (371)
|..-.|++-+. .....+-+||.|.||=.|.+.. ....+++|-.. +..+| ..-..||.=++ .|++||
T Consensus 34 GS~~~yy~~~g-~g~~s~~~li~leGGG~C~~~~tC~~r~~t~~gss~~~~~~~~~~Gils~~~~~Np~f~~--wN~V~v 110 (361)
T PF03283_consen 34 GSPPGYYFRPG-SGSGSNKWLIFLEGGGWCWDAETCAQRSSTNLGSSKNWPKTFAFSGILSNDPAENPDFYN--WNHVFV 110 (361)
T ss_pred CCCCcEEEccC-CCCCCceEEEEeccchhcCChhHHhhhccCccccccchhhhccccccccCCcccCCcccc--ccEEEE
Confidence 34444555443 2355678999999999998741 01123444222 11111 11234553222 577777
Q ss_pred ecccccccccccCCC--CCCCCCcHHHHHHH-HHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCC
Q 017435 147 ETPAGVGFSYTNRSS--DLLDTGDGRTAKDS-LQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKH 222 (371)
Q Consensus 147 D~PvGtGfSy~~~~~--~~~~~~~~~~a~~~-~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~ 222 (371)
= -=+|=++.-+.. ........-....+ ..+|.....+ +++ ..++.|+|.|-||.-+..-+.+|.+.-..
T Consensus 111 p--YC~Gd~~~G~~~~~~~~~~~l~frG~~i~~avl~~l~~~gl~~--a~~vlltG~SAGG~g~~~~~d~~~~~lp~--- 183 (361)
T PF03283_consen 111 P--YCDGDSHSGDVEPVDYGGTTLYFRGYRILRAVLDDLLSNGLPN--AKQVLLTGCSAGGLGAILHADYVRDRLPS--- 183 (361)
T ss_pred E--ecCCccccCcccccccCCceeEeecHHHHHHHHHHHHHhcCcc--cceEEEeccChHHHHHHHHHHHHHHHhcc---
Confidence 3 334444432211 11000111222333 3444444444 443 34699999999998887777777765321
Q ss_pred ceeeeEEEeeccccC
Q 017435 223 PINLKGIMVGNAVTD 237 (371)
Q Consensus 223 ~inLkGi~igng~~d 237 (371)
...++++.=..-++|
T Consensus 184 ~~~v~~~~DsG~f~d 198 (361)
T PF03283_consen 184 SVKVKCLSDSGFFLD 198 (361)
T ss_pred CceEEEecccccccc
Confidence 144555544433443
No 124
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=73.73 E-value=12 Score=35.01 Aligned_cols=86 Identities=16% Similarity=0.128 Sum_probs=56.1
Q ss_pred ceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCC
Q 017435 142 NLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSK 221 (371)
Q Consensus 142 nll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~ 221 (371)
+...|+-|.+.+.=-+-....+. .+..+-++.+...+..+.. ..+++.|+|.|-|+..+-...+++.+.....
T Consensus 4 ~~~~V~YPa~f~P~~g~~~~t~~-~Sv~~G~~~L~~ai~~~~~-----~~~~vvV~GySQGA~Va~~~~~~l~~~~~~~- 76 (225)
T PF08237_consen 4 NVVAVDYPASFWPVTGIGSPTYD-ESVAEGVANLDAAIRAAIA-----AGGPVVVFGYSQGAVVASNVLRRLAADGDPP- 76 (225)
T ss_pred ceEEecCCchhcCcCCCCCCccc-hHHHHHHHHHHHHHHhhcc-----CCCCEEEEEECHHHHHHHHHHHHHHhcCCCC-
Confidence 45567777644331111111121 3556677778888887554 4789999999999998888888887743211
Q ss_pred CceeeeEEEeeccc
Q 017435 222 HPINLKGIMVGNAV 235 (371)
Q Consensus 222 ~~inLkGi~igng~ 235 (371)
.=++.-+++|||.
T Consensus 77 -~~~l~fVl~gnP~ 89 (225)
T PF08237_consen 77 -PDDLSFVLIGNPR 89 (225)
T ss_pred -cCceEEEEecCCC
Confidence 1468899999984
No 125
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.12 E-value=55 Score=36.18 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=54.0
Q ss_pred CeEEEeCCCCCch-------hhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCc
Q 017435 96 PLVVWLNGGPGCS-------SVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGD 168 (371)
Q Consensus 96 PlvlwlnGGPG~S-------s~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~ 168 (371)
=-||++-|--|+- |.. .+-...||++=..+ .+||++. +...+=|=| -||- ..-...
T Consensus 90 IPVLFIPGNAGSyKQvRSiAS~a-~n~y~~~~~e~t~~----~d~~~~~-DFFaVDFnE-----e~tA------m~G~~l 152 (973)
T KOG3724|consen 90 IPVLFIPGNAGSYKQVRSIASVA-QNAYQGGPFEKTED----RDNPFSF-DFFAVDFNE-----EFTA------MHGHIL 152 (973)
T ss_pred ceEEEecCCCCchHHHHHHHHHH-hhhhcCCchhhhhc----ccCcccc-ceEEEcccc-----hhhh------hccHhH
Confidence 3478888877753 332 45567899984333 2467666 222111111 1111 111245
Q ss_pred HHHHHHHHHHHHHHHHh---CCCCC---CCCeEEEcccccccch
Q 017435 169 GRTAKDSLQFLIRWIDR---FPRYK---GREVYLTGESYAGHYV 206 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~---fp~~~---~~~~yi~GESYgG~yv 206 (371)
.++++.+.+++..-+.. -+||+ ...+.|+||||||..+
T Consensus 153 ~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVA 196 (973)
T KOG3724|consen 153 LDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVA 196 (973)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHH
Confidence 56788777777665544 45565 4559999999999743
No 126
>PLN02753 triacylglycerol lipase
Probab=72.89 E-value=10 Score=39.85 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCC--CCCCCeEEEcccccccchHHHHHHHHHhccC--C-CCceeeeEEEeeccccCc
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPR--YKGREVYLTGESYAGHYVPQLAREIMIHNSK--S-KHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~--~~~~~~yi~GESYgG~yvP~la~~i~~~n~~--~-~~~inLkGi~igng~~d~ 238 (371)
+...+.++++..++...+++|. .....++|+|||.||-.+-..|..|.+..-. . ...+++.-+..|.|-+..
T Consensus 285 ~k~S~reQVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~Dla~~g~n~~~~~~~~pV~vyTFGsPRVGN 361 (531)
T PLN02753 285 AKFSAREQILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYDIAEMGLNRSKKGKVIPVTVLTYGGPRVGN 361 (531)
T ss_pred chhhHHHHHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHHHHHhcccccccCccCceEEEEeCCCCccC
Confidence 4456788899999999888874 2345799999999999999888888764211 1 112566677777776554
No 127
>PLN02719 triacylglycerol lipase
Probab=71.97 E-value=10 Score=39.60 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCC--CCCeEEEcccccccchHHHHHHHHHhccC--CCC-ceeeeEEEeeccccCc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYK--GREVYLTGESYAGHYVPQLAREIMIHNSK--SKH-PINLKGIMVGNAVTDN 238 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~--~~~~yi~GESYgG~yvP~la~~i~~~n~~--~~~-~inLkGi~igng~~d~ 238 (371)
...+.++++..|++..+++|... ...++|+|||.||-.+-..|..|.+..-. ... .+++.-+..|.|-+..
T Consensus 272 k~SaReQVl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl~~~gln~~~~~~~~pVtvyTFGsPRVGN 347 (518)
T PLN02719 272 KFSAREQVLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDVAEMGLNRTRKGKVIPVTAFTYGGPRVGN 347 (518)
T ss_pred chhHHHHHHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHHHHhcccccccccccceEEEEecCCCccC
Confidence 34567788999999888998652 34699999999999999999888764211 111 2456667777775544
No 128
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=70.62 E-value=39 Score=35.25 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHH
Q 017435 166 TGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIM 214 (371)
Q Consensus 166 ~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~ 214 (371)
-+.+|+-.|+.+|++.-=.+|+.-.+.+++.+|-||.|...+=+-....
T Consensus 146 LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yP 194 (514)
T KOG2182|consen 146 LSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYP 194 (514)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCc
Confidence 4678999999999998888898766669999999999976554444333
No 129
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.61 E-value=8.6 Score=37.21 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEccccccc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGH 204 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~ 204 (371)
-.++|+.|++.+......-|+=..-++|+.|||-|..
T Consensus 85 a~~a~~aL~~aV~~~~~~lP~~~RPkL~l~GeSLGa~ 121 (289)
T PF10081_consen 85 AREAARALFEAVYARWSTLPEDRRPKLYLYGESLGAY 121 (289)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccCCeEEEeccCcccc
Confidence 4568888899998888888887666799999999753
No 130
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=70.17 E-value=17 Score=35.65 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=67.9
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhh--hhhhhcCCeEEccCCCceeeCCCCCc-CCcceEEeeccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAY--GASEEIGPFRINKTASGLYLNKLSWN-TEANLLFLETPAGVGF 154 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~--g~~~e~GP~~~~~~~~~l~~n~~sW~-~~anll~iD~PvGtGf 154 (371)
+..++=|++.-+......|.||.++|..|.+.... -.+...|=..+..|- ...- ...+..-...+..-||
T Consensus 66 g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~~~~~~~a~~G~~vl~~d~-------rGqg~~~~d~~~~~~~~~~g~ 138 (320)
T PF05448_consen 66 GSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDPFDLLPWAAAGYAVLAMDV-------RGQGGRSPDYRGSSGGTLKGH 138 (320)
T ss_dssp GEEEEEEEEEES-SSSSEEEEEEE--TT--GGGHHHHHHHHHTT-EEEEE---------TTTSSSS-B-SSBSSS-SSSS
T ss_pred CCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCcccccccccCCeEEEEecC-------CCCCCCCCCccccCCCCCccH
Confidence 56777777766545678899999999888765321 123344433332221 1100 0001000011112232
Q ss_pred ccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecc
Q 017435 155 SYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNA 234 (371)
Q Consensus 155 Sy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng 234 (371)
-.-...+...+.=-.....|.+..+ .|....|+...+.+.++|+|-||...-.+|. +.. .+++++...|
T Consensus 139 ~~~g~~~~~e~~yyr~~~~D~~rav-d~l~slpevD~~rI~v~G~SqGG~lal~~aa-Ld~---------rv~~~~~~vP 207 (320)
T PF05448_consen 139 ITRGIDDNPEDYYYRRVYLDAVRAV-DFLRSLPEVDGKRIGVTGGSQGGGLALAAAA-LDP---------RVKAAAADVP 207 (320)
T ss_dssp TTTTTTS-TTT-HHHHHHHHHHHHH-HHHHTSTTEEEEEEEEEEETHHHHHHHHHHH-HSS---------T-SEEEEESE
T ss_pred HhcCccCchHHHHHHHHHHHHHHHH-HHHHhCCCcCcceEEEEeecCchHHHHHHHH-hCc---------cccEEEecCC
Confidence 2110000000000012233444443 3566789998889999999999987666554 322 2888888887
Q ss_pred ccCc
Q 017435 235 VTDN 238 (371)
Q Consensus 235 ~~d~ 238 (371)
+...
T Consensus 208 ~l~d 211 (320)
T PF05448_consen 208 FLCD 211 (320)
T ss_dssp SSSS
T ss_pred Cccc
Confidence 6544
No 131
>COG0627 Predicted esterase [General function prediction only]
Probab=69.05 E-value=11 Score=37.20 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=68.9
Q ss_pred CCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCcee--eC-CCCCcCCcceEEeecccccccccccCCCCCCCCCcHH
Q 017435 94 NKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLY--LN-KLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGR 170 (371)
Q Consensus 94 ~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~--~n-~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~ 170 (371)
++.-|+|+.+|..|.. -.+...++++-..+...+. -+ -.-+....++--|+ |+|.|.|+-.+-..-. ....
T Consensus 52 ~~ipV~~~l~G~t~~~---~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~-p~G~~~sfY~d~~~~~-~~~~- 125 (316)
T COG0627 52 RDIPVLYLLSGLTCNE---PNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVM-PLGGGASFYSDWTQPP-WASG- 125 (316)
T ss_pred CCCCEEEEeCCCCCCC---CceEeccchhhhhhhcCeEEecCCCCcccCCCCccccc-cCCCccceecccccCc-cccC-
Confidence 4445666666778773 1233444544333322111 11 22344555555555 7999988732211100 0000
Q ss_pred HHHHHHHHHH-----HHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 171 TAKDSLQFLI-----RWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 171 ~a~~~~~fL~-----~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
..+.+.||. .|.+.||.-+. ..--|+|+|.||+=+=.+|.+-.++ ++.++=-+|+++|.
T Consensus 126 -~~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~---------f~~~sS~Sg~~~~s 190 (316)
T COG0627 126 -PYQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDR---------FKSASSFSGILSPS 190 (316)
T ss_pred -ccchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcch---------hceecccccccccc
Confidence 133333333 45556764332 2568999999998777777544332 66677777777776
No 132
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=68.73 E-value=11 Score=35.22 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecc
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNA 234 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng 234 (371)
+...+++++..+.++. +++|+|||=||..+-+.|..+.+... -.++.+..-||
T Consensus 69 ~~A~~yl~~~~~~~~~----~i~v~GHSkGGnLA~yaa~~~~~~~~-----~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPG----KIYVTGHSKGGNLAQYAAANCDDEIQ-----DRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCC----CEEEEEechhhHHHHHHHHHccHHHh-----hheeEEEEeeC
Confidence 4455677777777763 59999999999988888877554322 12556665555
No 133
>PLN02934 triacylglycerol lipase
Probab=67.85 E-value=14 Score=38.74 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
.++...|+++.+++|. .+++++|||-||-.+-.+|..+...
T Consensus 305 ~~v~~~lk~ll~~~p~---~kIvVTGHSLGGALAtLaA~~L~l~ 345 (515)
T PLN02934 305 YAVRSKLKSLLKEHKN---AKFVVTGHSLGGALAILFPTVLVLQ 345 (515)
T ss_pred HHHHHHHHHHHHHCCC---CeEEEeccccHHHHHHHHHHHHHHh
Confidence 3577788888888985 4699999999999888887666543
No 134
>PLN02324 triacylglycerol lipase
Probab=67.46 E-value=16 Score=37.31 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC------CCceeeeEEEeeccccCc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS------KHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~------~~~inLkGi~igng~~d~ 238 (371)
...+-+++..-|++..+++|.. ...++|+|||-||-.+-..|..|.+..... ...+++.-+..|.|-+..
T Consensus 192 k~SareqVl~eV~~L~~~Yp~e-~~sItvTGHSLGGALAtLaA~dl~~~~~n~~~~~~~~~~~~V~v~TFGsPRVGN 267 (415)
T PLN02324 192 TTSAQEQVQGELKRLLELYKNE-EISITFTGHSLGAVMSVLSAADLVYGKKNKINISLQKKQVPITVFAFGSPRIGD 267 (415)
T ss_pred hhHHHHHHHHHHHHHHHHCCCC-CceEEEecCcHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEecCCCcCC
Confidence 3456778888889988888853 236999999999998888888887642110 112555666666665544
No 135
>PLN00413 triacylglycerol lipase
Probab=65.92 E-value=8 Score=40.06 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 174 DSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 174 ~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
++...|++.++.+| +.+++++|||.||..+-..|..+..
T Consensus 269 ~i~~~Lk~ll~~~p---~~kliVTGHSLGGALAtLaA~~L~~ 307 (479)
T PLN00413 269 TILRHLKEIFDQNP---TSKFILSGHSLGGALAILFTAVLIM 307 (479)
T ss_pred HHHHHHHHHHHHCC---CCeEEEEecCHHHHHHHHHHHHHHh
Confidence 56777888888888 4469999999999988888876654
No 136
>PLN02310 triacylglycerol lipase
Probab=65.35 E-value=15 Score=37.43 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhCCCC-CCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 170 RTAKDSLQFLIRWIDRFPRY-KGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~-~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
.+..++...++...+.+++- ....+.|+|||.||-.+-..|..|.+.... +++.-+..|.|-+.
T Consensus 186 sa~~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~dl~~~~~~----~~v~vyTFGsPRVG 250 (405)
T PLN02310 186 SASEQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYEAATTIPD----LFVSVISFGAPRVG 250 (405)
T ss_pred hHHHHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHHHHHhCcC----cceeEEEecCCCcc
Confidence 45566777777777766532 234699999999999888877777553211 44556666666554
No 137
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=64.81 E-value=13 Score=33.42 Aligned_cols=67 Identities=21% Similarity=0.146 Sum_probs=40.4
Q ss_pred CCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhC-CCCCCCCeEEEcccccccchHHHHHH
Q 017435 139 TEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRF-PRYKGREVYLTGESYAGHYVPQLARE 212 (371)
Q Consensus 139 ~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~f-p~~~~~~~yi~GESYgG~yvP~la~~ 212 (371)
+.|-|.|++-.+..+.....-... --+..|.+|..|+...=..+ | ...+-++|||||...+-..+..
T Consensus 62 ~vAvV~WlgYdaP~~~~~~a~~~~----~A~~ga~~L~~f~~gl~a~~~~---~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 62 SVAVVAWLGYDAPAGGLPDAASPG----YARAGAPRLARFLDGLRATHGP---DAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred CeEEEEEcCCCCCCCccccccCch----HHHHHHHHHHHHHHHhhhhcCC---CCCEEEEEecchhHHHHHHhhh
Confidence 678889985444311111111111 12456777777777765555 3 4468999999998877666554
No 138
>PLN02847 triacylglycerol lipase
Probab=64.12 E-value=13 Score=39.66 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=38.0
Q ss_pred CcHHHHHHHHH----HHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeec
Q 017435 167 GDGRTAKDSLQ----FLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGN 233 (371)
Q Consensus 167 ~~~~~a~~~~~----fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~ign 233 (371)
+--..|+.+.. .|.+-+..||.| ++.|+|||.||-.+..++..+.++.. .-+++.+..|-
T Consensus 225 Gml~AArwI~~~i~~~L~kal~~~PdY---kLVITGHSLGGGVAALLAilLRe~~~----fssi~CyAFgP 288 (633)
T PLN02847 225 GMVAAARWIAKLSTPCLLKALDEYPDF---KIKIVGHSLGGGTAALLTYILREQKE----FSSTTCVTFAP 288 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCC---eEEEeccChHHHHHHHHHHHHhcCCC----CCCceEEEecC
Confidence 44444554444 445556668855 69999999999988888766543221 14456666664
No 139
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=63.44 E-value=9 Score=35.15 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=43.8
Q ss_pred ccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 149 PAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 149 PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
=-|||=|.+..... .++.+.|....+.++ .++|+-. .+.++|-|+|+-.+-.+|.+..+
T Consensus 68 fRgVG~S~G~fD~G---iGE~~Da~aaldW~~---~~hp~s~--~~~l~GfSFGa~Ia~~la~r~~e 126 (210)
T COG2945 68 FRGVGRSQGEFDNG---IGELEDAAAALDWLQ---ARHPDSA--SCWLAGFSFGAYIAMQLAMRRPE 126 (210)
T ss_pred ccccccccCcccCC---cchHHHHHHHHHHHH---hhCCCch--hhhhcccchHHHHHHHHHHhccc
Confidence 34899888776655 367778888888887 4888643 36999999998777777766544
No 140
>PLN02761 lipase class 3 family protein
Probab=63.02 E-value=19 Score=37.80 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-C--CCCeEEEcccccccchHHHHHHHHHhccC----CCCceeeeEEEeeccccCc
Q 017435 169 GRTAKDSLQFLIRWIDRFPRY-K--GREVYLTGESYAGHYVPQLAREIMIHNSK----SKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~-~--~~~~yi~GESYgG~yvP~la~~i~~~n~~----~~~~inLkGi~igng~~d~ 238 (371)
..+.++++..++...+.+|.. + ...++|+|||.||-.+-..|..|.+.+-. ....+++.-+..|.|-+..
T Consensus 268 ~SaR~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~DIa~~gln~~~~~~~~~PVtv~TFGsPRVGN 344 (527)
T PLN02761 268 FSAREQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYDIAELNLNHVPENNYKIPITVFSFSGPRVGN 344 (527)
T ss_pred hhHHHHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHHHHHhccccccccccCCceEEEEcCCCCcCC
Confidence 456778889999988888643 2 23599999999999998888888764321 0112556667777765544
No 141
>PLN02408 phospholipase A1
Probab=62.98 E-value=12 Score=37.62 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
...+++.+-++...+++|.. ...++|+|||.||-.+-..|..|.+.
T Consensus 179 s~r~qVl~eI~~ll~~y~~~-~~sI~vTGHSLGGALAtLaA~dl~~~ 224 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDE-PLSLTITGHSLGAALATLTAYDIKTT 224 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCC-CceEEEeccchHHHHHHHHHHHHHHh
Confidence 46677888888888888864 34699999999999988888888764
No 142
>PRK04940 hypothetical protein; Provisional
Probab=62.07 E-value=12 Score=33.80 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=29.9
Q ss_pred CCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccc
Q 017435 192 REVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYD 241 (371)
Q Consensus 192 ~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~ 241 (371)
.++.|+|.|-||-|+-.+|.+. .++. +|.||.+.|...
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~-----------g~~a-VLiNPAv~P~~~ 97 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLC-----------GIRQ-VIFNPNLFPEEN 97 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHH-----------CCCE-EEECCCCChHHH
Confidence 4789999999999999888753 2444 567999999653
No 143
>PLN03082 Iron-sulfur cluster assembly; Provisional
Probab=61.71 E-value=11 Score=33.58 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=45.5
Q ss_pred CCCCeEEEeCCCCCchhhhhhhhhhcCC----eEEccCCCceeeCCCC--CcCCcceEEeeccccccccc
Q 017435 93 LNKPLVVWLNGGPGCSSVAYGASEEIGP----FRINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSY 156 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~Ss~~~g~~~e~GP----~~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy 156 (371)
+..+|=|-+.|| |||++.|++-.+.-| ..+..+|.++...+.+ +.+-+.|=|+|...|.||-.
T Consensus 76 ~~~~LRl~V~~g-GCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~IDYve~l~~~gF~f 144 (163)
T PLN03082 76 EDKMLRLSVETG-GCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVV 144 (163)
T ss_pred CCceEEEEEecC-CCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEEEeecCCCCCeeEE
Confidence 446788999998 999986665433322 4555566666666666 55667788999999999987
No 144
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=61.44 E-value=16 Score=35.69 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=40.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCC-CCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccc
Q 017435 166 TGDGRTAKDSLQFLIRWIDRFPR-YKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYD 241 (371)
Q Consensus 166 ~~~~~~a~~~~~fL~~f~~~fp~-~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~ 241 (371)
.+.++.++++-.+++.+-..... +...++.|.|||=|..=+-.... ..+.. ...-.++|+++-.|+-|.+..
T Consensus 81 ~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~---~~~~~-~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 81 SSLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLS---SPNPS-PSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp --HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHH---H-TT----CCCEEEEEEEEE---TTST
T ss_pred chhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHh---ccCcc-ccccceEEEEEeCCCCChhHh
Confidence 35677788888777765555322 34568999999999765544333 32210 112669999999999888743
No 145
>KOG3101 consensus Esterase D [General function prediction only]
Probab=61.37 E-value=67 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=24.9
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
..+.-|+|||+|||=+-.++.+=. -..|.+---.|..+|..
T Consensus 140 ~~k~~IfGHSMGGhGAl~~~Lkn~---------~kykSvSAFAPI~NP~~ 180 (283)
T KOG3101|consen 140 PLKVGIFGHSMGGHGALTIYLKNP---------SKYKSVSAFAPICNPIN 180 (283)
T ss_pred chhcceeccccCCCceEEEEEcCc---------ccccceeccccccCccc
Confidence 345889999999985443332111 23566666666666653
No 146
>PLN02802 triacylglycerol lipase
Probab=61.33 E-value=19 Score=37.74 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
.+.+++..-++.+++++|.. ...++|+|||.||-.+-..|..|.+.... .+.+.-+..|.|-+.
T Consensus 309 S~reqVl~eV~~Ll~~Y~~e-~~sI~VTGHSLGGALAtLaA~dL~~~~~~---~~pV~vyTFGsPRVG 372 (509)
T PLN02802 309 SLSESVVGEVRRLMEKYKGE-ELSITVTGHSLGAALALLVADELATCVPA---APPVAVFSFGGPRVG 372 (509)
T ss_pred hHHHHHHHHHHHHHHhCCCC-cceEEEeccchHHHHHHHHHHHHHHhCCC---CCceEEEEcCCCCcc
Confidence 45677888888888888743 23699999999999988888888664321 123455566665443
No 147
>PLN02162 triacylglycerol lipase
Probab=60.62 E-value=12 Score=38.85 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 173 KDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 173 ~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
..+.+.|+..+.++|. .+++++|||.||-.+-.+|..+..
T Consensus 262 ~~I~~~L~~lL~k~p~---~kliVTGHSLGGALAtLaAa~L~~ 301 (475)
T PLN02162 262 YTIRQMLRDKLARNKN---LKYILTGHSLGGALAALFPAILAI 301 (475)
T ss_pred HHHHHHHHHHHHhCCC---ceEEEEecChHHHHHHHHHHHHHH
Confidence 3455667777788884 469999999999987777666654
No 148
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=60.55 E-value=45 Score=34.78 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEcccccccchHHH
Q 017435 176 LQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQL 209 (371)
Q Consensus 176 ~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~l 209 (371)
++.+++.-+.|--= ..++-|+|||-|++-+-.+
T Consensus 165 LkWV~~NIe~FGGD-p~NVTl~GeSAGa~si~~L 197 (491)
T COG2272 165 LKWVRDNIEAFGGD-PQNVTLFGESAGAASILTL 197 (491)
T ss_pred HHHHHHHHHHhCCC-ccceEEeeccchHHHHHHh
Confidence 34445555555422 2469999999998765443
No 149
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=60.19 E-value=50 Score=34.94 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=50.5
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKS 220 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~ 220 (371)
..++-||-+ |-|.|... . .-++-+.+.+.++|..+.+.. ...+++++|+|.||..+...+........
T Consensus 221 f~V~~iDwr-gpg~s~~~----~--~~ddY~~~~i~~al~~v~~~~---g~~kv~lvG~cmGGtl~a~ala~~aa~~~-- 288 (532)
T TIGR01838 221 HTVFVISWR-NPDASQAD----K--TFDDYIRDGVIAALEVVEAIT---GEKQVNCVGYCIGGTLLSTALAYLAARGD-- 288 (532)
T ss_pred cEEEEEECC-CCCccccc----C--ChhhhHHHHHHHHHHHHHHhc---CCCCeEEEEECcCcHHHHHHHHHHHHhCC--
Confidence 467778865 55554321 1 112223344666666655444 36789999999999987663332222210
Q ss_pred CCceeeeEEEeeccccCcc
Q 017435 221 KHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 221 ~~~inLkGi~igng~~d~~ 239 (371)
+-.++++++.+..+|..
T Consensus 289 --~~rv~slvll~t~~Df~ 305 (532)
T TIGR01838 289 --DKRIKSATFFTTLLDFS 305 (532)
T ss_pred --CCccceEEEEecCcCCC
Confidence 02388888888888865
No 150
>PLN03037 lipase class 3 family protein; Provisional
Probab=58.57 E-value=24 Score=37.04 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhCCCC-CCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 171 TAKDSLQFLIRWIDRFPRY-KGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~-~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
+.+++..-++...+.+++. ....++|+|||.||-.+-..|..|.+..... .++.-+..|.|-+.
T Consensus 296 areQVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~DIa~~~p~~---~~VtvyTFGsPRVG 360 (525)
T PLN03037 296 ASEQVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYEAARSVPAL---SNISVISFGAPRVG 360 (525)
T ss_pred hHHHHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHHHHHhCCCC---CCeeEEEecCCCcc
Confidence 4456667777777777643 2346999999999998888887776643210 13444455555443
No 151
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=58.54 E-value=39 Score=25.90 Aligned_cols=78 Identities=23% Similarity=0.165 Sum_probs=46.1
Q ss_pred ceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeeccccccccccc
Q 017435 79 RALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTN 158 (371)
Q Consensus 79 ~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~ 158 (371)
.+||+..++.+.. .+.+|+.++|--..|.- |..+.+ .|.. +-.+|+-+|+. |-|.|-+.
T Consensus 2 ~~L~~~~w~p~~~--~k~~v~i~HG~~eh~~r-y~~~a~-----------~L~~------~G~~V~~~D~r-GhG~S~g~ 60 (79)
T PF12146_consen 2 TKLFYRRWKPENP--PKAVVVIVHGFGEHSGR-YAHLAE-----------FLAE------QGYAVFAYDHR-GHGRSEGK 60 (79)
T ss_pred cEEEEEEecCCCC--CCEEEEEeCCcHHHHHH-HHHHHH-----------HHHh------CCCEEEEECCC-cCCCCCCc
Confidence 4677776655332 68899999987444443 344332 1211 12468889977 77777542
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH
Q 017435 159 RSSDLLDTGDGRTAKDSLQFLI 180 (371)
Q Consensus 159 ~~~~~~~~~~~~~a~~~~~fL~ 180 (371)
.. . ..+-++..+|+..|++
T Consensus 61 rg--~-~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 61 RG--H-IDSFDDYVDDLHQFIQ 79 (79)
T ss_pred cc--c-cCCHHHHHHHHHHHhC
Confidence 22 2 2355677777777663
No 152
>PRK14567 triosephosphate isomerase; Provisional
Probab=58.23 E-value=24 Score=33.69 Aligned_cols=62 Identities=15% Similarity=0.300 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+.+.++++..++++++.++-+-....+=|. |||-.-|.=+..|++. -+++|++||.+.+|++
T Consensus 177 s~e~i~~~~~~IR~~l~~~~~~~a~~v~Il---YGGSV~~~N~~~l~~~-------~diDG~LVGgasL~~~ 238 (253)
T PRK14567 177 SLEQIQETHQFIRSLLAKVDERLAKNIKIV---YGGSLKAENAKDILSL-------PDVDGGLIGGASLKAA 238 (253)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccceEE---EcCcCCHHHHHHHHcC-------CCCCEEEeehhhhcHH
Confidence 356889999999999877522112233333 9999999999999886 3599999999998875
No 153
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=58.15 E-value=7.2 Score=35.80 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecc
Q 017435 181 RWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNA 234 (371)
Q Consensus 181 ~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng 234 (371)
+|++.+|+...+++-|.|-|.||-.+-.+|....+ ++.++..||
T Consensus 11 ~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~----------i~avVa~~p 54 (213)
T PF08840_consen 11 DWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQ----------ISAVVAISP 54 (213)
T ss_dssp HHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSS----------EEEEEEES-
T ss_pred HHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCC----------ccEEEEeCC
Confidence 57789999998999999999999988888876642 666665555
No 154
>PRK07868 acyl-CoA synthetase; Validated
Probab=57.96 E-value=45 Score=37.93 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
..+++|+|+|.||..+-.+|.. ... -.++++++.+.-+|.
T Consensus 140 ~~~v~lvG~s~GG~~a~~~aa~--~~~------~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 140 GRDVHLVGYSQGGMFCYQAAAY--RRS------KDIASIVTFGSPVDT 179 (994)
T ss_pred CCceEEEEEChhHHHHHHHHHh--cCC------CccceEEEEeccccc
Confidence 3579999999999988777653 111 137888776666554
No 155
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=57.75 E-value=15 Score=33.69 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhc
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHN 217 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n 217 (371)
+.+..++.+.+.|.+..+..+.- .+++.++|||.||.++=.+...+.+..
T Consensus 54 gI~~~g~rL~~eI~~~~~~~~~~-~~~IsfIgHSLGGli~r~al~~~~~~~ 103 (217)
T PF05057_consen 54 GIDVCGERLAEEILEHIKDYESK-IRKISFIGHSLGGLIARYALGLLHDKP 103 (217)
T ss_pred hhHHHHHHHHHHHHHhccccccc-cccceEEEecccHHHHHHHHHHhhhcc
Confidence 44567888888888877776543 468999999999998876666665543
No 156
>PRK14566 triosephosphate isomerase; Provisional
Probab=55.71 E-value=24 Score=33.78 Aligned_cols=62 Identities=16% Similarity=0.397 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+.+.|+++..||++++.+.-......+=|. |||-.-|.=+..|... -+++|++||..-.|+.
T Consensus 187 t~e~a~~v~~~IR~~l~~~~~~~a~~~rIl---YGGSV~~~N~~~l~~~-------~dIDG~LVGgASL~~~ 248 (260)
T PRK14566 187 TPEQAQEVHAFIRKRLSEVSPFIGENIRIL---YGGSVTPSNAADLFAQ-------PDVDGGLIGGASLNST 248 (260)
T ss_pred CHHHHHHHHHHHHHHHHhcCccccccceEE---ecCCCCHhHHHHHhcC-------CCCCeEEechHhcCHH
Confidence 456789999999999875421112233333 9999999999999886 3599999999988884
No 157
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=55.49 E-value=22 Score=31.72 Aligned_cols=82 Identities=16% Similarity=0.219 Sum_probs=51.5
Q ss_pred ceEEeeccccccc-ccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHH--HHHhcc
Q 017435 142 NLLFLETPAGVGF-SYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLARE--IMIHNS 218 (371)
Q Consensus 142 nll~iD~PvGtGf-Sy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~--i~~~n~ 218 (371)
.+--|+-|+..+. +|. .+....++++...|+.+..+-| +.++.|+|-|-|+..+-.++.. +...
T Consensus 41 ~~~~V~YpA~~~~~~y~--------~S~~~G~~~~~~~i~~~~~~CP---~~kivl~GYSQGA~V~~~~~~~~~l~~~-- 107 (179)
T PF01083_consen 41 AVQGVEYPASLGPNSYG--------DSVAAGVANLVRLIEEYAARCP---NTKIVLAGYSQGAMVVGDALSGDGLPPD-- 107 (179)
T ss_dssp EEEE--S---SCGGSCH--------HHHHHHHHHHHHHHHHHHHHST---TSEEEEEEETHHHHHHHHHHHHTTSSHH--
T ss_pred EEEecCCCCCCCccccc--------ccHHHHHHHHHHHHHHHHHhCC---CCCEEEEecccccHHHHHHHHhccCChh--
Confidence 3444667777766 332 2556778888999999999999 5689999999999877776655 1000
Q ss_pred CCCCceeeeE-EEeeccccCcc
Q 017435 219 KSKHPINLKG-IMVGNAVTDNY 239 (371)
Q Consensus 219 ~~~~~inLkG-i~igng~~d~~ 239 (371)
..=++.+ +++|||.-.+.
T Consensus 108 ---~~~~I~avvlfGdP~~~~~ 126 (179)
T PF01083_consen 108 ---VADRIAAVVLFGDPRRGAG 126 (179)
T ss_dssp ---HHHHEEEEEEES-TTTBTT
T ss_pred ---hhhhEEEEEEecCCcccCC
Confidence 0034666 47788876543
No 158
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=55.26 E-value=26 Score=34.66 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 174 DSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 174 ~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
.+.+-++.-..++| +..++++|||-||..+...|..|...... ....++-+-.|-|-+
T Consensus 156 ~~~~~~~~L~~~~~---~~~i~vTGHSLGgAlA~laa~~i~~~~~~--~~~~v~v~tFG~PRv 213 (336)
T KOG4569|consen 156 GLDAELRRLIELYP---NYSIWVTGHSLGGALASLAALDLVKNGLK--TSSPVKVYTFGQPRV 213 (336)
T ss_pred HHHHHHHHHHHhcC---CcEEEEecCChHHHHHHHHHHHHHHcCCC--CCCceEEEEecCCCc
Confidence 34444444456777 55799999999999999999999986532 114455555555543
No 159
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.17 E-value=21 Score=35.80 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=64.6
Q ss_pred CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEc----cCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCc
Q 017435 93 LNKPLVVWLNGGPGCSSVAYGASEEIGPFRIN----KTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGD 168 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~----~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~ 168 (371)
..+-++++++| |.+=.|=+++|.. ..+...+.=-+||-..++++ ||-| |
T Consensus 114 ~~k~vlvFvHG--------fNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~--------~Yn~-----------D 166 (377)
T COG4782 114 SAKTVLVFVHG--------FNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLL--------GYNY-----------D 166 (377)
T ss_pred CCCeEEEEEcc--------cCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeee--------eccc-----------c
Confidence 56779999996 4555666666532 12211222223444444321 3332 3
Q ss_pred HHHHHHHHHHHHHHHHh---CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 169 GRTAKDSLQFLIRWIDR---FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~---fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
.+.+++....|+.+++. -+. -.++||..||.|.--+-..-+++.-++.. ..+..++=+++-.|-+|-+.
T Consensus 167 reS~~~Sr~aLe~~lr~La~~~~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~-~l~~ki~nViLAaPDiD~DV 238 (377)
T COG4782 167 RESTNYSRPALERLLRYLATDKP--VKRIYLLAHSMGTWLLMEALRQLAIRADR-PLPAKIKNVILAAPDIDVDV 238 (377)
T ss_pred hhhhhhhHHHHHHHHHHHHhCCC--CceEEEEEecchHHHHHHHHHHHhccCCc-chhhhhhheEeeCCCCChhh
Confidence 33333333334433332 222 45799999999886665555555544332 12256888899888888764
No 160
>TIGR01911 HesB_rel_seleno HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.
Probab=52.05 E-value=22 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=31.2
Q ss_pred eEEEeCCCCCchhhhhhhhhhc---CCeEEccCCCceeeCCCCCcC--CcceEEeeccccccc
Q 017435 97 LVVWLNGGPGCSSVAYGASEEI---GPFRINKTASGLYLNKLSWNT--EANLLFLETPAGVGF 154 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~~e~---GP~~~~~~~~~l~~n~~sW~~--~anll~iD~PvGtGf 154 (371)
|=|.+.|| |||++.|++=.+. +-..+..++.++.-.+.|-.- -+.|=|++...|.||
T Consensus 28 LRi~v~~g-GCsG~~Y~~~ld~~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy~~~~~g~gF 89 (92)
T TIGR01911 28 IRIHFAGM-GCMGPMFNLIADEEKEGDEIEKIHDLTFLIDKNLIDQFGGFSIECAEENFGAGF 89 (92)
T ss_pred EEEEEeCC-CccCcccceEecCCCCCCEEEEeCCEEEEECHHHHHHhCCCEEEEecCCCCCcE
Confidence 77778888 9999876554322 112233334444444444333 234556666666665
No 161
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=51.82 E-value=8.6 Score=34.98 Aligned_cols=16 Identities=44% Similarity=1.066 Sum_probs=14.0
Q ss_pred CCCCeEEEeCCCCCch
Q 017435 93 LNKPLVVWLNGGPGCS 108 (371)
Q Consensus 93 ~~~PlvlwlnGGPG~S 108 (371)
.+.|.|+|+=|||||-
T Consensus 5 ~~~~~IifVlGGPGsg 20 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSG 20 (195)
T ss_pred ccCCCEEEEEcCCCCC
Confidence 4578999999999986
No 162
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=50.53 E-value=13 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=26.1
Q ss_pred ccccCcccccccchhhhcccccCCHHHHHHHHh
Q 017435 233 NAVTDNYYDNLGTVTYWWSHAMISDKTYQQLIN 265 (371)
Q Consensus 233 ng~~d~~~~~~~~~~~a~~~gli~~~~~~~~~~ 265 (371)
.|.+||.....--.+-|...|+||.+.+..+.+
T Consensus 11 gGiidp~tg~~lsv~~A~~~glId~~~~~~L~e 43 (45)
T PF00681_consen 11 GGIIDPETGERLSVEEAIQRGLIDSDTAQKLLE 43 (45)
T ss_dssp TSEEETTTTEEEEHHHHHHTTSS-HHHHHHHHH
T ss_pred eeEEeCCCCeEEcHHHHHHCCCcCHHHHHHHHc
Confidence 477899887766677899999999999888764
No 163
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=49.50 E-value=1.3e+02 Score=28.87 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=22.1
Q ss_pred HHHHHHHHH----HHHHhCCCCCCCCeEEEcccccccchH
Q 017435 172 AKDSLQFLI----RWIDRFPRYKGREVYLTGESYAGHYVP 207 (371)
Q Consensus 172 a~~~~~fL~----~f~~~fp~~~~~~~yi~GESYgG~yvP 207 (371)
|..+.+||. =|.++-=+.+..+--|+||||||..+-
T Consensus 113 ~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl 152 (264)
T COG2819 113 GDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVL 152 (264)
T ss_pred hHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHH
Confidence 444455544 455552223344589999999998664
No 164
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=47.99 E-value=41 Score=30.70 Aligned_cols=63 Identities=17% Similarity=0.342 Sum_probs=40.3
Q ss_pred eEEEeCCCCCchhhhhhhhh----hc--CCeEEccCCCceeeCCCC--CcCCcceEEeecccccccccccCC
Q 017435 97 LVVWLNGGPGCSSVAYGASE----EI--GPFRINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNRS 160 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~~----e~--GP~~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~~ 160 (371)
+=|.+.| +|||++.|++-. |. +=..+..+|-++...+.| +.+-+.|=|+|...|.||...+.+
T Consensus 25 LRI~V~~-gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDyve~~~g~gF~f~NPN 95 (192)
T PRK11190 25 IRVFVIN-PGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAPN 95 (192)
T ss_pred EEEEEEC-CCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEEeecCCCCceEEECCC
Confidence 3344444 589976555433 11 223444455566666665 666788999999999999996554
No 165
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=47.24 E-value=13 Score=34.11 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
..+++..+|++ +|+-...+ ..|+|.|.||.-+-.+|.+-.+. +.+++..+|.+++.
T Consensus 98 l~~el~p~i~~---~~~~~~~~-~~i~G~S~GG~~Al~~~l~~Pd~---------F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 98 LTEELIPYIEA---NYRTDPDR-RAIAGHSMGGYGALYLALRHPDL---------FGAVIAFSGALDPS 153 (251)
T ss_dssp HHTHHHHHHHH---HSSEEECC-EEEEEETHHHHHHHHHHHHSTTT---------ESEEEEESEESETT
T ss_pred hhccchhHHHH---hcccccce-eEEeccCCCcHHHHHHHHhCccc---------cccccccCcccccc
Confidence 44455555554 34433343 89999999998777666543332 88999999988876
No 166
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=47.15 E-value=17 Score=32.25 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=26.8
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccC
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTD 237 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d 237 (371)
..+.+|+|||.|+.-+-..+. .+. ..+++|+++..|+-.
T Consensus 54 ~~~~ilVaHSLGc~~~l~~l~--~~~------~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 54 DEPTILVAHSLGCLTALRWLA--EQS------QKKVAGALLVAPFDP 92 (171)
T ss_dssp TTTEEEEEETHHHHHHHHHHH--HTC------CSSEEEEEEES--SC
T ss_pred CCCeEEEEeCHHHHHHHHHHh--hcc------cccccEEEEEcCCCc
Confidence 457999999999876555554 222 256999999999843
No 167
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=47.02 E-value=32 Score=32.94 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHHHHHHHHh-CC-----CCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeecccc
Q 017435 167 GDGRTAKDSLQFLIRWIDR-FP-----RYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVT 236 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~-fp-----~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~ 236 (371)
.+.+.+..+.++|.+=++. .| .+ ..+.|+|||=||+-+-.+|....+ ....+++++++..+|+=
T Consensus 62 ~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~--s~l~l~GHSrGGk~Af~~al~~~~----~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 62 DEVASAAEVIDWLAKGLESKLPLGVKPDF--SKLALAGHSRGGKVAFAMALGNAS----SSLDLRFSALILLDPVD 131 (259)
T ss_pred hhHHHHHHHHHHHHhcchhhccccccccc--cceEEeeeCCCCHHHHHHHhhhcc----cccccceeEEEEecccc
Confidence 4455666666665551111 22 22 259999999999954444433211 11237899999988864
No 168
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=46.93 E-value=54 Score=31.63 Aligned_cols=67 Identities=24% Similarity=0.196 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHHHHhCCC--C-CCCCeEEEcccccccchHHHHHHHHHhccCCCCc-ee--eeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPR--Y-KGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP-IN--LKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~--~-~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~-in--LkGi~igng~~d~~ 239 (371)
-...|..+++.++.-.+..+. + .+.++.|+|.|=||+=. ..|.++... - .+ ++ |.|.+.|.+..|..
T Consensus 44 ~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa-~~AA~l~~~-Y---ApeL~~~l~Gaa~gg~~~dl~ 116 (290)
T PF03583_consen 44 GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAA-LWAAELAPS-Y---APELNRDLVGAAAGGPPADLA 116 (290)
T ss_pred cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHH-HHHHHHhHH-h---CcccccceeEEeccCCccCHH
Confidence 345677777777765544442 2 35689999999998754 333333322 1 23 88 99999999987754
No 169
>PLN02429 triosephosphate isomerase
Probab=44.69 E-value=46 Score=32.81 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+.+.++.+..++++|+.. +.+-....+-|. |||-.-|.-+..|... -+++|+.||.+.+++.
T Consensus 237 s~e~~~~v~~~IR~~l~~~~~~~va~~irIL---YGGSV~~~N~~el~~~-------~diDG~LVGgASL~~~ 299 (315)
T PLN02429 237 SPQQAQEVHVAVRGWLKKNVSEEVASKTRII---YGGSVNGGNSAELAKE-------EDIDGFLVGGASLKGP 299 (315)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhhccCceEE---EcCccCHHHHHHHhcC-------CCCCEEEeecceecHH
Confidence 356788899999998875 433222334444 9999999999998876 4599999999998765
No 170
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=42.99 E-value=1.4e+02 Score=31.10 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCCCCeEEEcccccccchHHHH
Q 017435 176 LQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLA 210 (371)
Q Consensus 176 ~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la 210 (371)
++++++....|- =..+++-|+|||.||..|-.+.
T Consensus 180 L~wv~~~I~~FG-Gdp~~vTl~G~saGa~~v~~l~ 213 (545)
T KOG1516|consen 180 LRWVKDNIPSFG-GDPKNVTLFGHSAGAASVSLLT 213 (545)
T ss_pred HHHHHHHHHhcC-CCCCeEEEEeechhHHHHHHHh
Confidence 445555555554 1245699999999998875543
No 171
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.85 E-value=28 Score=32.93 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=43.6
Q ss_pred cceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
-.++=|+-| |-|=-+. .. . .++.++.|..+...|.. -+..+|+-++|+|+||+.+=.+|.++.+.
T Consensus 34 iel~avqlP-GR~~r~~--ep-~-~~di~~Lad~la~el~~------~~~d~P~alfGHSmGa~lAfEvArrl~~~ 98 (244)
T COG3208 34 IELLAVQLP-GRGDRFG--EP-L-LTDIESLADELANELLP------PLLDAPFALFGHSMGAMLAFEVARRLERA 98 (244)
T ss_pred hheeeecCC-CcccccC--Cc-c-cccHHHHHHHHHHHhcc------ccCCCCeeecccchhHHHHHHHHHHHHHc
Confidence 356778877 4432221 11 1 24666677766665542 35578999999999999988899888765
No 172
>PLN02561 triosephosphate isomerase
Probab=42.59 E-value=54 Score=31.23 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 168 DGRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+.+.++++..++++++.+ |..-....+-|. |||-.-|.=+..|... .+++|+.||.+.+|+
T Consensus 178 s~~~~~~v~~~Ir~~l~~~~~~~~a~~i~IL---YGGSV~~~N~~~l~~~-------~~iDG~LVG~ASL~~ 239 (253)
T PLN02561 178 TPAQAQEVHDELRKWLHKNVSPEVAATTRII---YGGSVTGANCKELAAQ-------PDVDGFLVGGASLKP 239 (253)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccceEE---EeCCcCHHHHHHHhcC-------CCCCeEEEehHhhHH
Confidence 356788889999988764 432223344454 9999999999998776 459999999999987
No 173
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=41.68 E-value=9 Score=26.06 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=14.3
Q ss_pred hHhhccCcHHHHhhhCC
Q 017435 342 YAEIYYNRPDVQKALHA 358 (371)
Q Consensus 342 ~~~~YLN~~~Vr~ALhv 358 (371)
-+..-|++||||++|++
T Consensus 15 gl~~~l~DpdvqrgL~~ 31 (42)
T PF07849_consen 15 GLLRALRDPDVQRGLGF 31 (42)
T ss_pred HHHHHHcCHHHHHHHHH
Confidence 45667999999999986
No 174
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=41.06 E-value=29 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 191 GREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 191 ~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
.+|.||++||-|+.-+...+..+.. .++|+++..|.
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~---------~V~GalLVApp 93 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQR---------QVAGALLVAPP 93 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhh---------ccceEEEecCC
Confidence 5689999999998777666666654 28999998874
No 175
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=40.52 E-value=33 Score=28.75 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCeEEEeCCCCCchhhhhhhh--hhcCCe--EEccCCCceeeCCCC--CcCCcceEEeecccccccccccC
Q 017435 95 KPLVVWLNGGPGCSSVAYGAS--EEIGPF--RINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 95 ~PlvlwlnGGPG~Ss~~~g~~--~e~GP~--~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~ 159 (371)
..|=|-+.|| |||++.|++- .|.+|- .++.++.++...+.+ +.+-+.|=|+|.+.|.||-..+.
T Consensus 39 ~~LRi~v~~g-GCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~IDy~~~~~~~gF~f~NP 108 (122)
T PRK09504 39 KGVRLGVKQT-GCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTEVDYVREGLNQIFKFHNP 108 (122)
T ss_pred ceEEEEEECC-CCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcEEEeecCCCcceEEEECC
Confidence 3466666654 9998765542 444443 333444444444444 55667788999999999987543
No 176
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=40.47 E-value=1.2e+02 Score=29.84 Aligned_cols=90 Identities=19% Similarity=0.095 Sum_probs=53.7
Q ss_pred ecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCC
Q 017435 88 ATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTG 167 (371)
Q Consensus 88 s~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~ 167 (371)
+..+.++.|-++.++|==|+--.+ .-+. .+ |...-. +.+.-||.- --|.|-..+. .+
T Consensus 45 ~~~~~~~~Pp~i~lHGl~GS~~Nw-~sv~------k~-----Ls~~l~-----~~v~~vd~R-nHG~Sp~~~~-----h~ 101 (315)
T KOG2382|consen 45 SSENLERAPPAIILHGLLGSKENW-RSVA------KN-----LSRKLG-----RDVYAVDVR-NHGSSPKITV-----HN 101 (315)
T ss_pred cccccCCCCceEEecccccCCCCH-HHHH------HH-----hccccc-----CceEEEecc-cCCCCccccc-----cC
Confidence 344678889999999744433221 2221 00 000000 156666744 5676653332 24
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAG 203 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG 203 (371)
-+..|.|+..||..+-. .++..+..|.|||.||
T Consensus 102 ~~~ma~dv~~Fi~~v~~---~~~~~~~~l~GHsmGG 134 (315)
T KOG2382|consen 102 YEAMAEDVKLFIDGVGG---STRLDPVVLLGHSMGG 134 (315)
T ss_pred HHHHHHHHHHHHHHccc---ccccCCceecccCcch
Confidence 57789999998886432 2456789999999999
No 177
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=40.05 E-value=50 Score=33.19 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
++..+++.+.+|-..-+ .|+..++.|.|-|-||.-+...|.-. -++|++++-.-+
T Consensus 290 n~~nA~DaVvQfAI~~L----gf~~edIilygWSIGGF~~~waAs~Y----------PdVkavvLDAtF 344 (517)
T KOG1553|consen 290 NTLNAADAVVQFAIQVL----GFRQEDIILYGWSIGGFPVAWAASNY----------PDVKAVVLDATF 344 (517)
T ss_pred cchHHHHHHHHHHHHHc----CCCccceEEEEeecCCchHHHHhhcC----------CCceEEEeecch
Confidence 56666666666655422 34578999999999998887777533 458888874443
No 178
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=39.25 E-value=62 Score=32.17 Aligned_cols=127 Identities=26% Similarity=0.347 Sum_probs=68.9
Q ss_pred EEEecCCCCceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhh-----hhhhhcCCeEEccCCCceeeCCCCCcCCcceE
Q 017435 70 YVPVNKVPGRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAY-----GASEEIGPFRINKTASGLYLNKLSWNTEANLL 144 (371)
Q Consensus 70 yl~v~~~~~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~-----g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll 144 (371)
-|...+ .+--.+.|... ......|+||-++|==|.|.-.| ..+.+-| | .++
T Consensus 53 ~v~~pd-g~~~~ldw~~~--p~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg-----------------~----~~V 108 (345)
T COG0429 53 RLETPD-GGFIDLDWSED--PRAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRG-----------------W----LVV 108 (345)
T ss_pred EEEcCC-CCEEEEeeccC--ccccCCceEEEEeccCCCCcCHHHHHHHHHHHhcC-----------------C----eEE
Confidence 444443 24456777432 12345699999999666663111 2233322 2 344
Q ss_pred EeecccccccccccC-CCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCc
Q 017435 145 FLETPAGVGFSYTNR-SSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHP 223 (371)
Q Consensus 145 ~iD~PvGtGfSy~~~-~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~ 223 (371)
-++-- |=|.... .......++. +|+..||..-.+++| .+++|.+|-|.||. .+|..+.+.... .
T Consensus 109 v~~~R---gcs~~~n~~p~~yh~G~t---~D~~~~l~~l~~~~~---~r~~~avG~SLGgn---mLa~ylgeeg~d---~ 173 (345)
T COG0429 109 VFHFR---GCSGEANTSPRLYHSGET---EDIRFFLDWLKARFP---PRPLYAVGFSLGGN---MLANYLGEEGDD---L 173 (345)
T ss_pred EEecc---cccCCcccCcceecccch---hHHHHHHHHHHHhCC---CCceEEEEecccHH---HHHHHHHhhccC---c
Confidence 44533 3333322 2222122333 455555544445677 78999999999985 466777665322 2
Q ss_pred eeeeEEEeeccc
Q 017435 224 INLKGIMVGNAV 235 (371)
Q Consensus 224 inLkGi~igng~ 235 (371)
....++++-+|+
T Consensus 174 ~~~aa~~vs~P~ 185 (345)
T COG0429 174 PLDAAVAVSAPF 185 (345)
T ss_pred ccceeeeeeCHH
Confidence 346666776664
No 179
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=38.79 E-value=55 Score=35.41 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=65.5
Q ss_pred ceEEEEEEeecC--CC-CCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCc----------ceEE
Q 017435 79 RALFYWLTEATH--NP-LNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEA----------NLLF 145 (371)
Q Consensus 79 ~~lfy~f~es~~--~~-~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~a----------nll~ 145 (371)
.-+.|-.+-..+ +| ..-|++|.+-||||.- ++.|.+.|.+.. -|++
T Consensus 623 g~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQ---------------------lVnnsfkgi~ylR~~~LaslGy~Vv~ 681 (867)
T KOG2281|consen 623 GLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQ---------------------LVNNSFKGIQYLRFCRLASLGYVVVF 681 (867)
T ss_pred CcEEEEEEEccccCCCCCCCceEEEEcCCCceE---------------------EeeccccceehhhhhhhhhcceEEEE
Confidence 345555433222 33 3469999999999853 455777776642 2588
Q ss_pred eecccccccccccCCCCC----C-CCCcHHHHHHHHHHHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHhccC
Q 017435 146 LETPAGVGFSYTNRSSDL----L-DTGDGRTAKDSLQFLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 146 iD~PvGtGfSy~~~~~~~----~-~~~~~~~a~~~~~fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
||.- | |-- .+..+ . ..+.. .++|-.+-|+-.-++.- |.. ..+-|-|-||||- |+...+.+..
T Consensus 682 IDnR---G-S~h-RGlkFE~~ik~kmGqV-E~eDQVeglq~Laeq~g-fidmdrV~vhGWSYGGY----LSlm~L~~~P- 749 (867)
T KOG2281|consen 682 IDNR---G-SAH-RGLKFESHIKKKMGQV-EVEDQVEGLQMLAEQTG-FIDMDRVGVHGWSYGGY----LSLMGLAQYP- 749 (867)
T ss_pred EcCC---C-ccc-cchhhHHHHhhccCee-eehhhHHHHHHHHHhcC-cccchheeEeccccccH----HHHHHhhcCc-
Confidence 9954 3 110 00000 0 01111 12333334433223332 222 3589999999994 3333333321
Q ss_pred CCCceeeeEEEeeccccCccc
Q 017435 220 SKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 220 ~~~~inLkGi~igng~~d~~~ 240 (371)
--++-.+-|.|+++...
T Consensus 750 ----~IfrvAIAGapVT~W~~ 766 (867)
T KOG2281|consen 750 ----NIFRVAIAGAPVTDWRL 766 (867)
T ss_pred ----ceeeEEeccCcceeeee
Confidence 12677777888888763
No 180
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=38.74 E-value=35 Score=27.68 Aligned_cols=63 Identities=24% Similarity=0.372 Sum_probs=38.4
Q ss_pred CeEEEeCCCCCchhhhhhhh--hhcCCe--EEccCCCceeeCCCC--CcCCcceEEeecccccccccccC
Q 017435 96 PLVVWLNGGPGCSSVAYGAS--EEIGPF--RINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 96 PlvlwlnGGPG~Ss~~~g~~--~e~GP~--~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~ 159 (371)
+|=|.+.+| |||++.|++- .|..+- .+..++-++...+.+ +.+-+.|=|+|.+.|.||...+.
T Consensus 23 ~lRi~v~~~-GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~~~nP 91 (105)
T TIGR02011 23 GLRLGVKTS-GCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKEGLNEGFKFTNP 91 (105)
T ss_pred eEEEEEeCC-CCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecCCCcceEEEECC
Confidence 455556655 8888655543 344443 233344444444444 56667888999999999987543
No 181
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=37.30 E-value=70 Score=30.47 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=60.8
Q ss_pred cceEEeecccccccccccCCCCCCCCCc-HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 141 ANLLFLETPAGVGFSYTNRSSDLLDTGD-GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 141 anll~iD~PvGtGfSy~~~~~~~~~~~~-~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
..||-.|-- |+|=|-....+... ..- +=+-.|+-..|..-=++-| ..|.|.+||||||+-.=.+++.= +.+..
T Consensus 58 f~Vlt~dyR-G~g~S~p~~~~~~~-~~~~DwA~~D~~aal~~~~~~~~---~~P~y~vgHS~GGqa~gL~~~~~-k~~a~ 131 (281)
T COG4757 58 FEVLTFDYR-GIGQSRPASLSGSQ-WRYLDWARLDFPAALAALKKALP---GHPLYFVGHSFGGQALGLLGQHP-KYAAF 131 (281)
T ss_pred ceEEEEecc-cccCCCccccccCc-cchhhhhhcchHHHHHHHHhhCC---CCceEEeeccccceeecccccCc-cccee
Confidence 356666643 66655543332211 111 1133344444433222334 67999999999999765555432 11100
Q ss_pred ---CC-----C---c-eeeeEEEeeccccCcccccccchh-hhcccc-cCCHHHHHHHHhhcccC
Q 017435 220 ---SK-----H---P-INLKGIMVGNAVTDNYYDNLGTVT-YWWSHA-MISDKTYQQLINTCDFR 270 (371)
Q Consensus 220 ---~~-----~---~-inLkGi~igng~~d~~~~~~~~~~-~a~~~g-li~~~~~~~~~~~C~~~ 270 (371)
+. . . -.|+.+.++|=..-|..-...+.. -+...| -++-..+.+..+=|..+
T Consensus 132 ~vfG~gagwsg~m~~~~~l~~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p 196 (281)
T COG4757 132 AVFGSGAGWSGWMGLRERLGAVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHP 196 (281)
T ss_pred eEeccccccccchhhhhcccceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCc
Confidence 00 0 0 345556666655544443333221 123334 34556677777778764
No 182
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=35.76 E-value=24 Score=35.58 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=22.0
Q ss_pred CeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCccc
Q 017435 193 EVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYY 240 (371)
Q Consensus 193 ~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~ 240 (371)
.+-++||||||--+-..+. +. ..++..++.+||.-|..
T Consensus 229 ~i~~~GHSFGGATa~~~l~---~d-------~r~~~~I~LD~W~~Pl~ 266 (379)
T PF03403_consen 229 RIGLAGHSFGGATALQALR---QD-------TRFKAGILLDPWMFPLG 266 (379)
T ss_dssp EEEEEEETHHHHHHHHHHH---H--------TT--EEEEES---TTS-
T ss_pred heeeeecCchHHHHHHHHh---hc-------cCcceEEEeCCcccCCC
Confidence 5899999999965443332 22 23788889999988753
No 183
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=35.56 E-value=87 Score=28.47 Aligned_cols=63 Identities=19% Similarity=0.372 Sum_probs=40.3
Q ss_pred eEEEeCCCCCchhhhhhhh----hhcCC--eEEccCCCceeeCCCC--CcCCcceEEeecccccccccccCC
Q 017435 97 LVVWLNGGPGCSSVAYGAS----EEIGP--FRINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNRS 160 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~----~e~GP--~~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~~ 160 (371)
|=|.+.| .|||++.|++- .|..+ ..+..+|-++...+.| +.+-+-|=|++...|.||...+.+
T Consensus 24 LRv~V~~-gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyve~~~g~gF~f~NPn 94 (190)
T TIGR03341 24 IRVFVVN-PGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPN 94 (190)
T ss_pred EEEEEEC-CccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEeecCCCceeEEeCCc
Confidence 4445554 58987665552 22222 3344455555555555 777888999999999999996644
No 184
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.25 E-value=1.2e+02 Score=28.63 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHH
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIM 214 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~ 214 (371)
+..+.|+..+..+. .| -+...+|++.|||||---..+..+..
T Consensus 171 t~veh~~yvw~~~v-----~p-a~~~sv~vvahsyGG~~t~~l~~~f~ 212 (297)
T KOG3967|consen 171 TPVEHAKYVWKNIV-----LP-AKAESVFVVAHSYGGSLTLDLVERFP 212 (297)
T ss_pred chHHHHHHHHHHHh-----cc-cCcceEEEEEeccCChhHHHHHHhcC
Confidence 44556666655443 23 23457999999999975554444443
No 185
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=34.67 E-value=2.3e+02 Score=29.13 Aligned_cols=89 Identities=22% Similarity=0.273 Sum_probs=55.2
Q ss_pred CCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHH
Q 017435 91 NPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGR 170 (371)
Q Consensus 91 ~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~ 170 (371)
...++|+||...| |+... .|.+-.+ +=.=.+|.|+||.-. -|=|... ..|....+..+
T Consensus 59 k~~drPtV~~T~G--------Y~~~~--~p~r~Ep----------t~Lld~NQl~vEhRf-F~~SrP~-p~DW~~Lti~Q 116 (448)
T PF05576_consen 59 KDFDRPTVLYTEG--------YNVST--SPRRSEP----------TQLLDGNQLSVEHRF-FGPSRPE-PADWSYLTIWQ 116 (448)
T ss_pred cCCCCCeEEEecC--------ccccc--Cccccch----------hHhhccceEEEEEee-ccCCCCC-CCCcccccHhH
Confidence 4467899998886 23321 2333111 111236899999641 1112211 22333357889
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccc
Q 017435 171 TAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHY 205 (371)
Q Consensus 171 ~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~y 205 (371)
+|.|.....+.|-..+| .++.-+|-|=||+-
T Consensus 117 AA~D~Hri~~A~K~iY~----~kWISTG~SKGGmT 147 (448)
T PF05576_consen 117 AASDQHRIVQAFKPIYP----GKWISTGGSKGGMT 147 (448)
T ss_pred hhHHHHHHHHHHHhhcc----CCceecCcCCCcee
Confidence 99999999999877676 36889999999974
No 186
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=34.47 E-value=41 Score=33.93 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHH
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREI 213 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i 213 (371)
+.+..+...++.-++.. ++++.|+|||+||.++-.+-...
T Consensus 101 ~~~~~lk~~ie~~~~~~----~~kv~li~HSmGgl~~~~fl~~~ 140 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKN----GKKVVLIAHSMGGLVARYFLQWM 140 (389)
T ss_pred HHHHHHHHHHHHHHHhc----CCcEEEEEeCCCchHHHHHHHhc
Confidence 34455555555544433 67999999999998776665555
No 187
>PTZ00333 triosephosphate isomerase; Provisional
Probab=33.94 E-value=89 Score=29.77 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCc
Q 017435 168 DGRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDN 238 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~ 238 (371)
+.+.++++..++++++.. |.......+-|. |||-.-|.=+..|... -+++|+.||.+.+++
T Consensus 181 ~~e~i~~~~~~IR~~l~~~~~~~~~~~~~IL---YGGSV~~~N~~~l~~~-------~~vDG~LvG~asl~~ 242 (255)
T PTZ00333 181 TPEQAQEVHAFIRKWLAEKVGADVAEATRII---YGGSVNEKNCKELIKQ-------PDIDGFLVGGASLKP 242 (255)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccccceEE---EcCCCCHHHHHHHhcC-------CCCCEEEEehHhhhh
Confidence 456788899999988764 432223334444 9999999999998775 459999999998874
No 188
>PRK14565 triosephosphate isomerase; Provisional
Probab=33.63 E-value=83 Score=29.69 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
-+.+.++....+++++. .++-|. |||-.-|.-+..+.+. -+++|+.||.+.+|++
T Consensus 171 a~~e~i~~~~~~Ir~~~--------~~~~Il---YGGSV~~~N~~~l~~~-------~~iDG~LvG~asl~~~ 225 (237)
T PRK14565 171 PSNDAIAEAFEIIRSYD--------SKSHII---YGGSVNQENIRDLKSI-------NQLSGVLVGSASLDVD 225 (237)
T ss_pred CCHHHHHHHHHHHHHhC--------CCceEE---EcCccCHhhHHHHhcC-------CCCCEEEEechhhcHH
Confidence 34567888899998762 123333 9999999999999884 3599999999999875
No 189
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=33.50 E-value=46 Score=32.27 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred CCCeEEEeCC-CCCchh-hhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccccCCCCCCCCCcHHH
Q 017435 94 NKPLVVWLNG-GPGCSS-VAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRT 171 (371)
Q Consensus 94 ~~PlvlwlnG-GPG~Ss-~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~ 171 (371)
++|.+|=.+- |.-.-| .. ++|.. | .-.-..+..-+.=||.| |-...-..-..+|...+.++.
T Consensus 22 ~kp~ilT~HDvGlNh~scF~-~ff~~--~------------~m~~i~~~f~i~Hi~aP-Gqe~ga~~~p~~y~yPsmd~L 85 (283)
T PF03096_consen 22 NKPAILTYHDVGLNHKSCFQ-GFFNF--E------------DMQEILQNFCIYHIDAP-GQEEGAATLPEGYQYPSMDQL 85 (283)
T ss_dssp TS-EEEEE--TT--HHHHCH-HHHCS--H------------HHHHHHTTSEEEEEE-T-TTSTT-----TT-----HHHH
T ss_pred CCceEEEeccccccchHHHH-HHhcc--h------------hHHHHhhceEEEEEeCC-CCCCCcccccccccccCHHHH
Confidence 6898888885 554445 32 44331 1 11123456778889988 444433333444433578889
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcccccccchhhhc
Q 017435 172 AKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWW 250 (371)
Q Consensus 172 a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~~~~~~~~~~a~ 250 (371)
|+++...|..| . =+.++-.|+--|+-....+|..-.+ .+.|+++.|+.... .+|.++++
T Consensus 86 Ae~l~~Vl~~f-----~--lk~vIg~GvGAGAnIL~rfAl~~p~---------~V~GLiLvn~~~~~----~gw~Ew~~ 144 (283)
T PF03096_consen 86 AEMLPEVLDHF-----G--LKSVIGFGVGAGANILARFALKHPE---------RVLGLILVNPTCTA----AGWMEWFY 144 (283)
T ss_dssp HCTHHHHHHHH-----T-----EEEEEETHHHHHHHHHHHHSGG---------GEEEEEEES---S-------HHHHHH
T ss_pred HHHHHHHHHhC-----C--ccEEEEEeeccchhhhhhccccCcc---------ceeEEEEEecCCCC----ccHHHHHH
Confidence 99998888765 2 3458889999888777777743322 28899998875444 35555543
No 190
>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional
Probab=33.25 E-value=34 Score=27.89 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=36.8
Q ss_pred eEEEeCCCCCchhhhhhhh--hhcCC--eEEccCCCceeeCCCC--CcCCcceEEeecccccccccccC
Q 017435 97 LVVWLNGGPGCSSVAYGAS--EEIGP--FRINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~--~e~GP--~~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~ 159 (371)
|=|.+. ++|||++.|.+- .|..+ ..+..++-++...+.+ +-+-+.|=|+|.+.|.||...+.
T Consensus 26 LRi~v~-~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NP 93 (107)
T PRK09502 26 LRLGVR-TSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNP 93 (107)
T ss_pred EEEEEE-CCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEeeCCCCceEEEECC
Confidence 444444 458887654442 34333 2233344444444433 66777899999999999988543
No 191
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.74 E-value=1.1e+02 Score=29.29 Aligned_cols=61 Identities=16% Similarity=0.300 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+.+.+++...++++++.. +-+- ...+-|. |||-.-|.-+..|... -+++|+.||....|+.
T Consensus 187 s~e~~~~~~~~Ir~~l~~~~~~~-~~~irIL---YGGSV~~~N~~~l~~~-------~diDG~LvG~aSl~~~ 248 (260)
T PRK15492 187 SADYADEKHAVIKQCLIELFGDA-GDDIPVF---YGGSVNAENANELFGQ-------PHIDGLFIGRSAWDAD 248 (260)
T ss_pred CHHHHHHHHHHHHHHHHHHhccc-cCceeEE---EcCccCHHHHHHHhcC-------CCCCEEEeehhhcCHH
Confidence 345678889999988653 4322 2344554 9999999999999876 3599999999988875
No 192
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=30.26 E-value=1.4e+02 Score=28.42 Aligned_cols=61 Identities=21% Similarity=0.348 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 168 DGRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
+.+.++++..|+++++.. |. -....+-|. |||-.-|.=+..+... -+++|+.||.+.++++
T Consensus 178 s~~~~~~v~~~Ir~~l~~~~~-~~~~~~~Il---YGGSV~~~N~~~l~~~-------~~vDG~LVG~Asl~~~ 239 (250)
T PRK00042 178 TPEQAQEVHAFIRAVLAELYG-EVAEKVRIL---YGGSVKPDNAAELMAQ-------PDIDGALVGGASLKAE 239 (250)
T ss_pred CHHHHHHHHHHHHHHHHHhcc-cccCCceEE---EcCCCCHHHHHHHhcC-------CCCCEEEEeeeeechH
Confidence 356788899999998864 33 112334444 9999999999998876 4599999999998765
No 193
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=29.96 E-value=1.3e+02 Score=28.33 Aligned_cols=60 Identities=20% Similarity=0.424 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHh-CCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccccCcc
Q 017435 169 GRTAKDSLQFLIRWIDR-FPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAVTDNY 239 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~-fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~~d~~ 239 (371)
.+.+++...++++++.. +.+ ....+-|. |||-.-|.=+..+.+.. +++|+.||.+.+|+.
T Consensus 175 ~~~~~ev~~~ir~~l~~~~~~-~~~~~~Il---YGGSV~~~N~~~l~~~~-------~vDG~LVG~Asl~~~ 235 (242)
T cd00311 175 PEQAQEVHAFIRKLLAELYGE-VAEKVRIL---YGGSVNPENAAELLAQP-------DIDGVLVGGASLKAE 235 (242)
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccCceeEE---ECCCCCHHHHHHHhcCC-------CCCEEEeehHhhCHH
Confidence 45688888999998875 433 23344444 99999999999888753 499999999998764
No 194
>PF14020 DUF4236: Protein of unknown function (DUF4236)
Probab=29.28 E-value=71 Score=23.12 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=10.4
Q ss_pred eEEeecccccccccc
Q 017435 143 LLFLETPAGVGFSYT 157 (371)
Q Consensus 143 ll~iD~PvGtGfSy~ 157 (371)
-+-++-| |+|+||.
T Consensus 41 ~~t~~iP-GtGlsyr 54 (55)
T PF14020_consen 41 RTTVGIP-GTGLSYR 54 (55)
T ss_pred EEEEEcC-CCccEEe
Confidence 3567777 8999984
No 195
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=28.38 E-value=58 Score=25.71 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=20.6
Q ss_pred eeccchhHHHHHHHHHHHHHHHHHhhh
Q 017435 10 IAAHQRHEISLSMLSLFLALNLLASSC 36 (371)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (371)
|++.+|+.+.+.|+.+|.++++-.+..
T Consensus 22 Lsp~~R~~vvl~ml~~fa~l~ly~~~~ 48 (85)
T PF13150_consen 22 LSPKQRLRVVLVMLVLFAALCLYMTVS 48 (85)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999887766655544
No 196
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=28.11 E-value=1.4e+02 Score=28.39 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccch
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYV 206 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yv 206 (371)
+..+.|+-+..+|...-+++ .=+.+.++|||+||.-+
T Consensus 81 ~~~~qa~wl~~vl~~L~~~Y---~~~~~N~VGHSmGg~~~ 117 (255)
T PF06028_consen 81 NYKKQAKWLKKVLKYLKKKY---HFKKFNLVGHSMGGLSW 117 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----SEEEEEEETHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc---CCCEEeEEEECccHHHH
Confidence 45677888888887655544 34579999999999754
No 197
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=27.62 E-value=1.8e+02 Score=28.64 Aligned_cols=94 Identities=11% Similarity=0.030 Sum_probs=57.7
Q ss_pred CcCCcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 137 WNTEANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 137 W~~~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
..+++-+.=||.| |--..-..-..+|...+.++.|+++...|+.| .+ +-++=+|+--|.-....+|..-.++
T Consensus 75 i~~~fcv~HV~~P-Gqe~gAp~~p~~y~yPsmd~LAd~l~~VL~~f-----~l--k~vIg~GvGAGAyIL~rFAl~hp~r 146 (326)
T KOG2931|consen 75 ILEHFCVYHVDAP-GQEDGAPSFPEGYPYPSMDDLADMLPEVLDHF-----GL--KSVIGMGVGAGAYILARFALNHPER 146 (326)
T ss_pred HHhheEEEecCCC-ccccCCccCCCCCCCCCHHHHHHHHHHHHHhc-----Cc--ceEEEecccccHHHHHHHHhcChhh
Confidence 3345677888877 33222222233433347788999999999854 23 3477788887766666666533332
Q ss_pred ccCCCCceeeeEEEeeccccCcccccccchhhhcc
Q 017435 217 NSKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWS 251 (371)
Q Consensus 217 n~~~~~~inLkGi~igng~~d~~~~~~~~~~~a~~ 251 (371)
+-|+++.|.. -...+|+++++.
T Consensus 147 ---------V~GLvLIn~~----~~a~gwiew~~~ 168 (326)
T KOG2931|consen 147 ---------VLGLVLINCD----PCAKGWIEWAYN 168 (326)
T ss_pred ---------eeEEEEEecC----CCCchHHHHHHH
Confidence 8899998864 234567776554
No 198
>PRK06762 hypothetical protein; Provisional
Probab=27.30 E-value=37 Score=29.24 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=11.8
Q ss_pred CeEEEeCCCCCch
Q 017435 96 PLVVWLNGGPGCS 108 (371)
Q Consensus 96 PlvlwlnGGPG~S 108 (371)
|.++|+.|.|||-
T Consensus 2 ~~li~i~G~~GsG 14 (166)
T PRK06762 2 TTLIIIRGNSGSG 14 (166)
T ss_pred CeEEEEECCCCCC
Confidence 7899999999986
No 199
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=25.85 E-value=56 Score=27.85 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=14.8
Q ss_pred CCCCCeEEEeCCCCCch
Q 017435 92 PLNKPLVVWLNGGPGCS 108 (371)
Q Consensus 92 ~~~~PlvlwlnGGPG~S 108 (371)
..++||||=++|.||+-
T Consensus 49 ~p~KpLVlSfHG~tGtG 65 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTG 65 (127)
T ss_pred CCCCCEEEEeecCCCCc
Confidence 45789999999999985
No 200
>COG4425 Predicted membrane protein [Function unknown]
Probab=25.81 E-value=92 Score=32.33 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCCeEEEccccccc
Q 017435 168 DGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGH 204 (371)
Q Consensus 168 ~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~ 204 (371)
-.++|+.+.+..-.+...-|+=..-++|+.|||-|..
T Consensus 373 g~~aa~aLf~aVy~yw~qLP~~sRPKLylhG~SLGa~ 409 (588)
T COG4425 373 GADAARALFEAVYGYWTQLPKSSRPKLYLHGESLGAM 409 (588)
T ss_pred chhHHHHHHHHHHHHHHhCCcCCCCceEEeccccccc
Confidence 3568999999999999999988777899999999853
No 201
>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional
Probab=25.26 E-value=74 Score=26.13 Aligned_cols=62 Identities=29% Similarity=0.470 Sum_probs=34.4
Q ss_pred eEEEeCCCCCchhhhhhhhhhcCC----eEEccCCCceeeCCCC--CcCCcceEEeecccccccccccC
Q 017435 97 LVVWLNGGPGCSSVAYGASEEIGP----FRINKTASGLYLNKLS--WNTEANLLFLETPAGVGFSYTNR 159 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~~e~GP----~~~~~~~~~l~~n~~s--W~~~anll~iD~PvGtGfSy~~~ 159 (371)
|=|.+.|| |||++.|++-.+..| ..+..+|-++...+.+ +.+-+.|=|+|.+.|.||-..+.
T Consensus 34 LRi~v~~~-GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~IDy~~~~~~~~F~f~NP 101 (115)
T PRK13623 34 LRVYITGG-GCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNP 101 (115)
T ss_pred EEEEEeCC-CCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEEEeecCCCcceEEEECC
Confidence 45555554 888765544333222 2233344444433333 44456788888888888877543
No 202
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=24.34 E-value=45 Score=22.21 Aligned_cols=11 Identities=36% Similarity=1.123 Sum_probs=5.7
Q ss_pred CeEEEeCCCCC
Q 017435 96 PLVVWLNGGPG 106 (371)
Q Consensus 96 PlvlwlnGGPG 106 (371)
--.||++|-||
T Consensus 25 gRTiWFqGdPG 35 (39)
T PF09292_consen 25 GRTIWFQGDPG 35 (39)
T ss_dssp S-EEEESS---
T ss_pred CCEEEeeCCCC
Confidence 45789999887
No 203
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=23.59 E-value=1.9e+02 Score=27.03 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=59.1
Q ss_pred CceEEEEEEeecCCCCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCcCCcceEEeecccccccccc
Q 017435 78 GRALFYWLTEATHNPLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWNTEANLLFLETPAGVGFSYT 157 (371)
Q Consensus 78 ~~~lfy~f~es~~~~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~ 157 (371)
|.+|.|--+- +-.--||.+-|.-||+-.+|+.=.++ .++ -. ...|+-+|-| |-|=|..
T Consensus 30 g~ql~y~~~G-----~G~~~iLlipGalGs~~tDf~pql~~-------------l~k--~l-~~TivawDPp-GYG~SrP 87 (277)
T KOG2984|consen 30 GTQLGYCKYG-----HGPNYILLIPGALGSYKTDFPPQLLS-------------LFK--PL-QVTIVAWDPP-GYGTSRP 87 (277)
T ss_pred CceeeeeecC-----CCCceeEecccccccccccCCHHHHh-------------cCC--CC-ceEEEEECCC-CCCCCCC
Confidence 5677776222 12246888999999998764322211 010 11 1678999955 5444443
Q ss_pred cCCCCCCC---CCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHH
Q 017435 158 NRSSDLLD---TGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREI 213 (371)
Q Consensus 158 ~~~~~~~~---~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i 213 (371)
... ++.. .-|.+.|-|+.++|. -.+|-|.|-|=||.-.-..|.+-
T Consensus 88 P~R-kf~~~ff~~Da~~avdLM~aLk----------~~~fsvlGWSdGgiTalivAak~ 135 (277)
T KOG2984|consen 88 PER-KFEVQFFMKDAEYAVDLMEALK----------LEPFSVLGWSDGGITALIVAAKG 135 (277)
T ss_pred Ccc-cchHHHHHHhHHHHHHHHHHhC----------CCCeeEeeecCCCeEEEEeeccC
Confidence 221 2211 134555666665553 45799999999998765555433
No 204
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=23.28 E-value=1.1e+02 Score=32.94 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHH
Q 017435 175 SLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAR 211 (371)
Q Consensus 175 ~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~ 211 (371)
+-..++.-++.. .++++.|+|||+||.++=.|-.
T Consensus 199 LK~lIE~ay~~n---ggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 199 LKSNIELMVATN---GGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred HHHHHHHHHHHc---CCCeEEEEEeCCchHHHHHHHH
Confidence 334444444443 2578999999999987766654
No 205
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=23.05 E-value=5.4e+02 Score=26.39 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=64.0
Q ss_pred CceEEEEEEeecC-C-CCCCCeEEEeCCCCCchhhhhhhhhhcCCeEEccCCCceeeCCCCCc-C-CcceEEeecccccc
Q 017435 78 GRALFYWLTEATH-N-PLNKPLVVWLNGGPGCSSVAYGASEEIGPFRINKTASGLYLNKLSWN-T-EANLLFLETPAGVG 153 (371)
Q Consensus 78 ~~~lfy~f~es~~-~-~~~~PlvlwlnGGPG~Ss~~~g~~~e~GP~~~~~~~~~l~~n~~sW~-~-~anll~iD~PvGtG 153 (371)
|-+++|--..... + .++---+|.++|=||+=- -|...=|..-++.. ++-. + ...|+-=- =.|-|
T Consensus 133 GL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~----EFykfIPlLT~p~~-------hg~~~d~~FEVI~PS-lPGyg 200 (469)
T KOG2565|consen 133 GLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVR----EFYKFIPLLTDPKR-------HGNESDYAFEVIAPS-LPGYG 200 (469)
T ss_pred ceeEEEEEecCCccccCCcccceEEecCCCchHH----HHHhhhhhhcCccc-------cCCccceeEEEeccC-CCCcc
Confidence 5578877553321 1 222234567899999753 22333344433321 1111 1 22333322 23555
Q ss_pred cccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHh
Q 017435 154 FSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 154 fSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
||-..+..++ +..++|+-+...+- ++.-++|||=|--||......+|....+.
T Consensus 201 wSd~~sk~GF---n~~a~ArvmrkLMl-------RLg~nkffiqGgDwGSiI~snlasLyPen 253 (469)
T KOG2565|consen 201 WSDAPSKTGF---NAAATARVMRKLML-------RLGYNKFFIQGGDWGSIIGSNLASLYPEN 253 (469)
T ss_pred cCcCCccCCc---cHHHHHHHHHHHHH-------HhCcceeEeecCchHHHHHHHHHhhcchh
Confidence 5554444443 66677776666654 34457899998888887777777766553
No 206
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.01 E-value=1.5e+02 Score=27.55 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHH
Q 017435 169 GRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREI 213 (371)
Q Consensus 169 ~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i 213 (371)
.+...|+..++ .|+.+.|+-....+.++|-|+||+.+=.+|...
T Consensus 90 ~~~~~d~~a~~-~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 90 AEVLADIDAAL-DYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHH-HHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 45555555554 467778877777899999999999777776543
No 207
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=22.95 E-value=2.1e+02 Score=26.53 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=53.4
Q ss_pred eEEEeCCCCCchhhhhhhhhhcCCeEEc-------------cCCCceee--CCCCC-cCCcceEEeecccccccccccCC
Q 017435 97 LVVWLNGGPGCSSVAYGASEEIGPFRIN-------------KTASGLYL--NKLSW-NTEANLLFLETPAGVGFSYTNRS 160 (371)
Q Consensus 97 lvlwlnGGPG~Ss~~~g~~~e~GP~~~~-------------~~~~~l~~--n~~sW-~~~anll~iD~PvGtGfSy~~~~ 160 (371)
|++=..|-||-..++ |.-.|++|..-. .++..+.. --|.= .-..=.+|||- | .+.
T Consensus 31 LTvH~tGN~~~a~~G-G~p~~la~a~P~~~~~~l~~l~~~~~e~y~v~~EaTHHGPt~~~~Ps~FvEI----G----Ste 101 (213)
T PF04414_consen 31 LTVHTTGNFGEAEYG-GKPGELAPANPRLMKALLRALKKHAPEGYEVSYEATHHGPTDLSVPSVFVEI----G----STE 101 (213)
T ss_dssp EEEE--EESS--TTS-S-TTEE-BB-HHHHHHHHHHHHHHGGCT-EEEE--S-SS-----SBEEEEEE----E----ESH
T ss_pred EEEeCCCCCCccccC-CCCCccccCCHHHHHHHHHHHHHhccCCCEEEEEeeccCCCCCCCCcEEEEe----C----CCH
Confidence 667777888876665 666666654311 11211111 11111 12234677772 3 122
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHHHh
Q 017435 161 SDLLDTGDGRTAKDSLQFLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIMIH 216 (371)
Q Consensus 161 ~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~~~ 216 (371)
. ..+|..+++.+...+.+.+..-++-.- ..+.-+| ||||+|.+...+++.
T Consensus 102 ~---eW~d~~a~~~vA~avl~~~~~~~~~~~~~~~ig~G---G~HYapr~t~~~l~~ 152 (213)
T PF04414_consen 102 E---EWNDPDAAEAVARAVLEVLESDEKAECCPVAIGFG---GGHYAPRFTKLALET 152 (213)
T ss_dssp H---HHT-HHHHHHHHHHHHHHHHHTTCSTT-EEEEEE----S-TT-HHHHHHHHHC
T ss_pred H---HhCChHHHHHHHHHHHHHhcccccccccceeEEec---CcccchhhhhhhhcC
Confidence 2 247888899998888888887664321 3455555 799999999999875
No 208
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=22.94 E-value=92 Score=26.74 Aligned_cols=52 Identities=21% Similarity=0.299 Sum_probs=34.8
Q ss_pred ceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEccc
Q 017435 142 NLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGES 200 (371)
Q Consensus 142 nll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GES 200 (371)
=||-|| |.||+.-...-.+..-+|+...+.+.+.-...++.+++ ..+..|+|
T Consensus 22 ivvRiD---G~~F~kft~~~~f~KP~D~r~~~~M~~aa~~l~~~~~~----~~~aY~~S 73 (135)
T PF04446_consen 22 IVVRID---GRGFHKFTKRHGFEKPNDERFLKAMNEAAKALMEEFPD----IVLAYGQS 73 (135)
T ss_dssp EEEEEE---ETTHHHHHHHTT--SS--HHHHHHHHHHHHHHHHHSSS----EEEEEEET
T ss_pred EEEEEe---CcchhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhCCC----cEEEEEcC
Confidence 478899 88998754443455567888999999999988888872 34444444
No 209
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=22.88 E-value=2.1e+02 Score=28.60 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccCCCCceeeeEEEeeccc
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSKSKHPINLKGIMVGNAV 235 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~~~~~inLkGi~igng~ 235 (371)
++.+.+.+.|. ...+ ..||+-|+|+|-|+..|=..-..+.+++.. .+--.-++||.|.
T Consensus 203 ~aG~~LA~~L~----~~~~-G~RpVtLvG~SLGarvI~~cL~~L~~~~~~---~lVe~VvL~Gapv 260 (345)
T PF05277_consen 203 KAGKVLADALL----SRNQ-GERPVTLVGHSLGARVIYYCLLELAERKAF---GLVENVVLMGAPV 260 (345)
T ss_pred HHHHHHHHHHH----HhcC-CCCceEEEeecccHHHHHHHHHHHHhcccc---CeEeeEEEecCCC
Confidence 34455555554 3333 688999999999999999888888876321 1322344556554
No 210
>PF07389 DUF1500: Protein of unknown function (DUF1500); InterPro: IPR009974 This family consists of several Orthopoxvirus specific proteins, which include Vaccinia virus, B6 protein, they are around 100 residues in length. The function of this family is unknown.
Probab=22.60 E-value=68 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCeEEEccccc
Q 017435 174 DSLQFLIRWIDRFPRYKGREVYLTGESYA 202 (371)
Q Consensus 174 ~~~~fL~~f~~~fp~~~~~~~yi~GESYg 202 (371)
++|++.+.|+-+| |..+.|.+-|+||+
T Consensus 8 dIYDAvRaflLr~--Y~~KrfIV~g~S~~ 34 (100)
T PF07389_consen 8 DIYDAVRAFLLRH--YYDKRFIVYGRSNA 34 (100)
T ss_pred hHHHHHHHHHHHH--HccceEEEecchHH
Confidence 6778888887776 44678999999994
No 211
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=22.49 E-value=76 Score=32.92 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-CCeEEEcccccccchHHHHHHHH
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKG-REVYLTGESYAGHYVPQLAREIM 214 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~-~~~yi~GESYgG~yvP~la~~i~ 214 (371)
+..++.+.-|++.++..-+..+ +++.|++||.||.|+=++-....
T Consensus 159 e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~ 204 (473)
T KOG2369|consen 159 EERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVE 204 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhccc
Confidence 3445555555555555333334 89999999999999877765443
No 212
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.16 E-value=69 Score=28.79 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHH
Q 017435 170 RTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAR 211 (371)
Q Consensus 170 ~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~ 211 (371)
...+++.. ...+++..|+....++-++|-|+||.++-.+|.
T Consensus 77 ~~~~~~~a-a~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~ 117 (218)
T PF01738_consen 77 QVAADLQA-AVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAA 117 (218)
T ss_dssp HHHHHHHH-HHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHC
T ss_pred HHHHHHHH-HHHHHHhccccCCCcEEEEEEecchHHhhhhhh
Confidence 34444433 345667777666778999999999988776663
No 213
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=22.05 E-value=1.2e+02 Score=29.89 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=35.6
Q ss_pred CcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHH
Q 017435 167 GDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIM 214 (371)
Q Consensus 167 ~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~ 214 (371)
+....++++...+.+.+.... .+++.|.|||.||.-+..++..+-
T Consensus 105 ~~~~~~~ql~~~V~~~l~~~g---a~~v~LigHS~GG~~~ry~~~~~~ 149 (336)
T COG1075 105 SLAVRGEQLFAYVDEVLAKTG---AKKVNLIGHSMGGLDSRYYLGVLG 149 (336)
T ss_pred cccccHHHHHHHHHHHHhhcC---CCceEEEeecccchhhHHHHhhcC
Confidence 455678888888888777665 578999999999999887776554
No 214
>COG0218 Predicted GTPase [General function prediction only]
Probab=21.96 E-value=1.3e+02 Score=27.77 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCCeEEEeCC-CCCchhhhhhhhhh-cCCeEEc-cCCCceeeCCCCCcCCcceEEeeccccccccccc
Q 017435 94 NKPLVVWLNG-GPGCSSVAYGASEE-IGPFRIN-KTASGLYLNKLSWNTEANLLFLETPAGVGFSYTN 158 (371)
Q Consensus 94 ~~PlvlwlnG-GPG~Ss~~~g~~~e-~GP~~~~-~~~~~l~~n~~sW~~~anll~iD~PvGtGfSy~~ 158 (371)
+-|=|.++-. -=|=||+. -.+.. -+=-|+. .-|.|-..|-+.|... +.+||-| ||.|..
T Consensus 23 ~~~EIaF~GRSNVGKSSlI-N~l~~~k~LArtSktPGrTq~iNff~~~~~--~~lVDlP---GYGyAk 84 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLI-NALTNQKNLARTSKTPGRTQLINFFEVDDE--LRLVDLP---GYGYAK 84 (200)
T ss_pred CCcEEEEEccCcccHHHHH-HHHhCCcceeecCCCCCccceeEEEEecCc--EEEEeCC---Cccccc
Confidence 3345555443 34778874 44442 2212222 2345666788877776 8899999 999864
No 215
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=21.77 E-value=1.1e+02 Score=27.65 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCCCCCeEEEcccccccchHHHHHHHHH
Q 017435 188 RYKGREVYLTGESYAGHYVPQLAREIMI 215 (371)
Q Consensus 188 ~~~~~~~yi~GESYgG~yvP~la~~i~~ 215 (371)
.+..-|+.|-|.||||.....+|..+..
T Consensus 85 ~l~~gpLi~GGkSmGGR~aSmvade~~A 112 (213)
T COG3571 85 GLAEGPLIIGGKSMGGRVASMVADELQA 112 (213)
T ss_pred cccCCceeeccccccchHHHHHHHhhcC
Confidence 4556689999999999998888877654
No 216
>PF15253 STIL_N: SCL-interrupting locus protein N-terminus
Probab=21.43 E-value=1e+02 Score=31.46 Aligned_cols=37 Identities=32% Similarity=0.613 Sum_probs=27.1
Q ss_pred cceEEeEEEecCCCCceEEEEEEeecCCCCCCCeE-EEeCC
Q 017435 64 FQQFSGYVPVNKVPGRALFYWLTEATHNPLNKPLV-VWLNG 103 (371)
Q Consensus 64 ~~~~sGyl~v~~~~~~~lfy~f~es~~~~~~~Plv-lwlnG 103 (371)
.....|||+.+. .+++.. ..|+.....+.||| +||.|
T Consensus 198 ~~~k~GfLTmDq--tRkl~l-LlesDpk~~slPLVGiWlsG 235 (410)
T PF15253_consen 198 GTYKSGFLTMDQ--TRKLLL-LLESDPKASSLPLVGIWLSG 235 (410)
T ss_pred cccccceeeEcc--ccceEE-EeccCCCccCCCceeeEecC
Confidence 346899999986 577777 66765555676865 89986
No 217
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=21.35 E-value=55 Score=28.82 Aligned_cols=14 Identities=43% Similarity=0.916 Sum_probs=11.1
Q ss_pred CCeEEEeCCCCCch
Q 017435 95 KPLVVWLNGGPGCS 108 (371)
Q Consensus 95 ~PlvlwlnGGPG~S 108 (371)
+|.||||.|=||+-
T Consensus 1 ~g~vIwltGlsGsG 14 (156)
T PF01583_consen 1 KGFVIWLTGLSGSG 14 (156)
T ss_dssp S-EEEEEESSTTSS
T ss_pred CCEEEEEECCCCCC
Confidence 58999999988875
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=20.18 E-value=4.8e+02 Score=23.48 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=35.5
Q ss_pred CcceEEeecccccccccccCCCCCCCCCcHHHHHHHHHHHHHHHHhCCCCCCCCeEEEcccccccchHHHHHHHHHhccC
Q 017435 140 EANLLFLETPAGVGFSYTNRSSDLLDTGDGRTAKDSLQFLIRWIDRFPRYKGREVYLTGESYAGHYVPQLAREIMIHNSK 219 (371)
Q Consensus 140 ~anll~iD~PvGtGfSy~~~~~~~~~~~~~~~a~~~~~fL~~f~~~fp~~~~~~~yi~GESYgG~yvP~la~~i~~~n~~ 219 (371)
..++++||.| |.|. .+.+..+.+..++ +.- ...+++++=.+..|.-.-..+....+.
T Consensus 83 ~~D~vlIDT~---Gr~~----------~d~~~~~el~~~~----~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~--- 139 (196)
T PF00448_consen 83 GYDLVLIDTA---GRSP----------RDEELLEELKKLL----EAL---NPDEVHLVLSATMGQEDLEQALAFYEA--- 139 (196)
T ss_dssp TSSEEEEEE----SSSS----------THHHHHHHHHHHH----HHH---SSSEEEEEEEGGGGGHHHHHHHHHHHH---
T ss_pred CCCEEEEecC---Ccch----------hhHHHHHHHHHHh----hhc---CCccceEEEecccChHHHHHHHHHhhc---
Confidence 3789999998 7664 2233333343333 332 234677777777665443333333332
Q ss_pred CCCceeeeEEEe
Q 017435 220 SKHPINLKGIMV 231 (371)
Q Consensus 220 ~~~~inLkGi~i 231 (371)
++++|+++
T Consensus 140 ----~~~~~lIl 147 (196)
T PF00448_consen 140 ----FGIDGLIL 147 (196)
T ss_dssp ----SSTCEEEE
T ss_pred ----ccCceEEE
Confidence 56777776
No 219
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=20.15 E-value=1.4e+02 Score=19.87 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=11.7
Q ss_pred eEEEEEEeecCCCCCCCeEEEeCCCCC
Q 017435 80 ALFYWLTEATHNPLNKPLVVWLNGGPG 106 (371)
Q Consensus 80 ~lfy~f~es~~~~~~~PlvlwlnGGPG 106 (371)
+-+|||-.+........--+|+.+||+
T Consensus 12 NrYwwf~~s~~~~~~~~~~~~v~~~~~ 38 (38)
T PF15613_consen 12 NRYWWFSSSSSNSQYYNGGRFVEQGPD 38 (38)
T ss_pred ceEEEEecccccCCCCCceEEEEeCCC
Confidence 455666333332223333444444553
Done!