Query 017436
Match_columns 371
No_of_seqs 148 out of 167
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4675 Uncharacterized conser 100.0 9E-54 2E-58 407.2 18.3 263 46-342 4-272 (273)
2 PF03735 ENT: ENT domain; Int 99.9 1.7E-27 3.6E-32 189.6 9.4 72 50-122 1-72 (73)
3 PF09465 LBR_tudor: Lamin-B re 99.0 2.7E-10 5.8E-15 87.1 2.9 41 228-268 7-47 (55)
4 smart00743 Agenet Tudor-like d 98.1 3E-06 6.4E-11 63.6 3.7 54 228-282 4-59 (61)
5 smart00333 TUDOR Tudor domain. 96.9 0.001 2.3E-08 48.6 3.5 39 228-268 4-43 (57)
6 cd04508 TUDOR Tudor domains ar 96.6 0.0024 5.3E-08 45.2 3.6 38 230-268 1-39 (48)
7 PF09038 53-BP1_Tudor: Tumour 96.6 0.0017 3.6E-08 57.1 3.1 41 226-267 2-42 (122)
8 PF06003 SMN: Survival motor n 94.0 0.061 1.3E-06 52.2 4.2 48 229-279 71-118 (264)
9 PLN00104 MYST -like histone ac 91.3 1.3 2.8E-05 46.6 9.6 59 228-287 55-119 (450)
10 PF11717 Tudor-knot: RNA bindi 88.8 0.71 1.5E-05 34.6 4.1 49 229-279 3-53 (55)
11 KOG3026 Splicing factor SPF30 87.8 0.41 8.8E-06 46.9 2.7 36 228-263 92-127 (262)
12 KOG4675 Uncharacterized conser 75.0 12 0.00026 37.4 7.5 39 217-255 173-211 (273)
13 PF15057 DUF4537: Domain of un 69.7 5.3 0.00011 34.8 3.4 38 230-268 1-38 (124)
14 PF15315 FRG2: Facioscapulohum 68.5 20 0.00044 33.8 7.0 47 46-92 111-158 (181)
15 PF05641 Agenet: Agenet domain 64.4 7 0.00015 30.3 2.8 38 241-279 18-60 (68)
16 TIGR02612 mob_myst_A mobile my 64.2 11 0.00025 34.0 4.5 47 56-103 3-49 (150)
17 COG3078 Uncharacterized protei 58.2 28 0.0006 32.4 5.9 53 49-102 96-156 (169)
18 PF07039 DUF1325: SGF29 tudor- 56.6 18 0.00039 31.9 4.4 43 229-271 74-117 (130)
19 PF02828 L27: L27 domain; Int 48.6 44 0.00096 24.9 4.8 35 82-117 7-41 (56)
20 PF14717 DUF4465: Domain of un 46.8 13 0.00028 34.9 1.9 43 239-281 104-153 (182)
21 KOG1328 Synaptic vesicle prote 42.0 33 0.00072 39.0 4.4 57 51-109 54-110 (1103)
22 KOG4094 Uncharacterized conser 41.4 1.4E+02 0.003 28.1 7.6 68 49-118 75-152 (178)
23 PF06260 DUF1024: Protein of u 40.7 19 0.0004 30.2 1.8 15 351-365 21-35 (82)
24 COG0231 Efp Translation elonga 38.9 35 0.00076 30.2 3.4 43 229-276 48-95 (131)
25 PF01690 PLRV_ORF5: Potato lea 38.6 44 0.00095 35.8 4.5 50 223-274 53-103 (465)
26 PF04967 HTH_10: HTH DNA bindi 34.5 63 0.0014 24.7 3.7 37 67-105 11-47 (53)
27 PRK05244 Der GTPase activator; 34.2 94 0.002 29.4 5.5 51 50-100 96-153 (177)
28 smart00454 SAM Sterile alpha m 32.7 1.8E+02 0.004 20.7 6.2 52 49-105 8-61 (68)
29 PRK09618 flgD flagellar basal 32.6 59 0.0013 29.6 3.8 39 226-265 88-126 (142)
30 KOG0644 Uncharacterized conser 31.1 47 0.001 38.3 3.5 39 229-267 981-1031(1113)
31 PF07647 SAM_2: SAM domain (St 30.7 58 0.0013 24.1 3.0 51 48-103 7-59 (66)
32 PF14772 NYD-SP28: Sperm tail 29.7 1.1E+02 0.0024 25.3 4.8 27 79-105 73-99 (104)
33 PF07374 DUF1492: Protein of u 29.1 1.7E+02 0.0037 24.3 5.8 49 49-105 47-95 (100)
34 PF09548 Spore_III_AB: Stage I 28.4 3E+02 0.0065 24.9 7.7 60 40-100 63-126 (170)
35 KOG4327 mRNA splicing protein 27.2 1.3E+02 0.0028 29.3 5.2 37 132-174 145-181 (218)
36 COG2944 Predicted transcriptio 27.1 96 0.0021 27.0 4.0 35 84-123 49-83 (104)
37 PF04220 YihI: Der GTPase acti 26.7 1E+02 0.0022 29.0 4.3 52 49-100 96-154 (169)
38 PF14338 Mrr_N: Mrr N-terminal 26.6 1.6E+02 0.0034 23.9 5.0 41 60-102 4-44 (92)
39 PF12701 LSM14: Scd6-like Sm d 26.5 87 0.0019 26.6 3.6 62 225-287 3-77 (96)
40 PF04717 Phage_base_V: Phage-r 24.8 67 0.0014 25.1 2.5 29 246-275 1-29 (79)
41 PRK11546 zraP zinc resistance 24.7 1.2E+02 0.0026 27.7 4.3 39 59-108 49-87 (143)
42 PF15608 PELOTA_1: PELOTA RNA 23.7 2.6E+02 0.0056 24.2 6.0 58 66-123 7-81 (100)
43 KOG1525 Sister chromatid cohes 23.6 8.9 0.00019 45.2 -3.7 47 222-268 982-1029(1266)
44 PF13812 PPR_3: Pentatricopept 23.5 1.9E+02 0.0042 17.9 4.2 30 60-93 2-32 (34)
45 COG1212 KdsB CMP-2-keto-3-deox 22.4 97 0.0021 30.7 3.5 66 39-105 159-241 (247)
46 COG3413 Predicted DNA binding 22.0 1.1E+02 0.0024 28.3 3.7 37 67-105 166-202 (215)
47 PRK03999 translation initiatio 21.7 1.1E+02 0.0023 27.0 3.4 46 229-279 51-101 (129)
48 PF05918 API5: Apoptosis inhib 21.4 31 0.00068 37.5 0.0 7 319-325 545-551 (556)
49 PRK05337 beta-hexosaminidase; 20.2 1.7E+02 0.0036 29.7 4.8 68 28-97 166-251 (337)
50 TIGR00383 corA magnesium Mg(2+ 20.1 51 0.0011 31.8 1.2 46 248-294 3-51 (318)
No 1
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=100.00 E-value=9e-54 Score=407.21 Aligned_cols=263 Identities=43% Similarity=0.719 Sum_probs=216.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHH-HHhhhcCCC
Q 017436 46 MQNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIR-EWRKASGLQ 124 (371)
Q Consensus 46 ~~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iR-e~r~~gg~q 124 (371)
.++||+.+||+||++||++||+||+||+++||||||++|||||++|+||+|||+++++++.+|+.|.+|| +|+..+..|
T Consensus 4 s~~~~~~~~~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~q 83 (273)
T KOG4675|consen 4 SRDEMEAQLHRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQ 83 (273)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchh
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999 466555433
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhhhcccccccccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc----CCCC
Q 017436 125 PGMPSIPQPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQPSSSALRPGPPPGSKGKKPKSFS----TGLA 200 (371)
Q Consensus 125 ~g~~~~~q~~hd~~psPt~~asrKkqK~s~s~~s~~~g~psp~~~p~~qpsssa~k~g~~~~~k~kk~k~~s----~~~~ 200 (371)
--.+ .....-+..|+|+.+.++|+||+.++++++.+.+.+|++++.+++. +.+.+++++ ..++
T Consensus 84 e~~~-e~~~~~~i~p~~~~sta~kiqkn~~~~~a~~~~~~~ps~~~t~~~~------------~~~~a~pss~s~~~p~~ 150 (273)
T KOG4675|consen 84 EWSG-EGRREWPIAPRPHPSTARKIQKNLLANKAIQHNAVLPSPIPTGPLT------------FNNTATPSSFSVPSPVS 150 (273)
T ss_pred hhhh-hhhhccccCCCcCchhHHHhhccccchhhhhcccCCCCccccCCcc------------cCcccccccccCCCCCC
Confidence 2111 1123466779999999999999999999999999999998877664 222222221 1111
Q ss_pred CCcccccCCCCCCCCCCCCCCcCcCCccccceeeeccCCCCCceeeeeeeccC-CCCceeeeccCCCCCCcceeeeccCC
Q 017436 201 GRGQVANRGSSGAFPANGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNP-NEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 201 g~~~~~~r~~~~~~~~~~~~~~~~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~-~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
.| ..+++ ++|||++|...||+++.|||++|++|+. .+++|+|+||.++.+++|+||||+++
T Consensus 151 ~~-------------~n~pp-----~slvgr~v~~k~pdk~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~I 212 (273)
T KOG4675|consen 151 SW-------------GNVPP-----ESLVGRKVWIKWPDKRKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLREI 212 (273)
T ss_pred cc-------------ccCCc-----hhhccccccccCcccccccccccccchhhhhhhhhcccccccccCCccccccccC
Confidence 12 12233 6699999999999999999999999555 45788999999999999999999999
Q ss_pred CCccccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 017436 280 SPEDIKWEGDEPGISRKGGRPGPGRGTKKPLTRGGGVSGAGRGRGTMKPKKGFPFSQNGIGKK 342 (371)
Q Consensus 280 spedi~W~~e~p~i~~r~~~~~~g~g~~r~~~~~g~~~g~grgrg~~k~~k~~~~~qng~g~~ 342 (371)
+||||+|+++++++..+.++.++|.|.++...+++ .++ +||+|..+ |+.+++.|||.+++
T Consensus 213 ~p~DIrw~g~~~~~~~~~~~~~~g~g~~~~t~~~~-~~~-~~~~~~~~-~~~~~~~~ngg~~~ 272 (273)
T KOG4675|consen 213 SPEDIRWEGGDPGNPVAPNHSKPGTGTFNTTRRTQ-SPG-ARGRGPRT-RTGIPKTQNGGGRK 272 (273)
T ss_pred CHHhccccCCCCCcccccCCCCCCcccccccCCcc-Ccc-ccCCCCcc-ccccccccCccccC
Confidence 99999999999999999999999999999888877 333 36665555 78999999995544
No 2
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=99.94 E-value=1.7e-27 Score=189.58 Aligned_cols=72 Identities=57% Similarity=0.932 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhcC
Q 017436 50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASG 122 (371)
Q Consensus 50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~gg 122 (371)
|+++||+||++||++||+||+||++ |||+||+|||+||++|+||||||++++++|++|+.|++||+|+++++
T Consensus 1 ~~~~l~~LE~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~~ 72 (73)
T PF03735_consen 1 MERQLHRLELEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGGN 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-SS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence 6899999999999999999999965 99999999999999999999999999999999999999999998875
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.98 E-value=2.7e-10 Score=87.07 Aligned_cols=41 Identities=29% Similarity=0.627 Sum_probs=34.8
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
-+|.+|++|||+++-||+|.|++||..+.+|.|.|+||++-
T Consensus 7 ~~Ge~V~~rWP~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel 47 (55)
T PF09465_consen 7 AIGEVVMVRWPGSSLYYEGKVLSYDSKSDRYTVLYEDGTEL 47 (55)
T ss_dssp -SS-EEEEE-TTTS-EEEEEEEEEETTTTEEEEEETTS-EE
T ss_pred cCCCEEEEECCCCCcEEEEEEEEecccCceEEEEEcCCCEE
Confidence 37999999999999999999999999999999999999984
No 4
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.10 E-value=3e-06 Score=63.57 Aligned_cols=54 Identities=26% Similarity=0.395 Sum_probs=47.4
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccC--CCCCCcceeeeccCCCCc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI--NTADETWEWVNLKEISPE 282 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~--g~~~EtwEwVdL~e~spe 282 (371)
.+|..|.++|++++.||+|+|+.++. +++|.|.|++ ....|++++.+|+-+.+.
T Consensus 4 ~~G~~Ve~~~~~~~~W~~a~V~~~~~-~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 4 KKGDRVEVFSKEEDSWWEAVVTKVLG-DGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred CCCCEEEEEECCCCEEEEEEEEEECC-CCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 47999999999999999999999998 6789999999 666888888888877654
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=96.90 E-value=0.001 Score=48.58 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=34.5
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccC-CCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD 268 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~-g~~~ 268 (371)
-+|..|.+.| +|+.||.|+|++++++ +...|.|.| |+.+
T Consensus 4 ~~G~~~~a~~-~d~~wyra~I~~~~~~-~~~~V~f~D~G~~~ 43 (57)
T smart00333 4 KVGDKVAARW-EDGEWYRARIIKVDGE-QLYEVFFIDYGNEE 43 (57)
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEECCC-CEEEEEEECCCccE
Confidence 5788999999 9999999999999998 888899999 5553
No 6
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.64 E-value=0.0024 Score=45.20 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=31.7
Q ss_pred cceeeeccCCCCCceeeeeeeccCCCCceeeeccC-CCCC
Q 017436 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDI-NTAD 268 (371)
Q Consensus 230 GrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~-g~~~ 268 (371)
|..+.++|++|+.||.|+|..+++ ++.-.|.|.| |+.+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~-~~~~~V~f~DyG~~~ 39 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS-DGKVEVFFVDYGNTE 39 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC-CCcEEEEEEcCCCcE
Confidence 557889999999999999999998 6667788887 5543
No 7
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=96.60 E-value=0.0017 Score=57.15 Aligned_cols=41 Identities=20% Similarity=0.589 Sum_probs=33.8
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~ 267 (371)
.+|||.||-.+|-+++-||.|+|+. +....+..|.||||..
T Consensus 2 ~~~iG~rV~AkWS~n~yyY~G~I~~-~~~~~kykv~FdDG~~ 42 (122)
T PF09038_consen 2 SSFIGLRVFAKWSDNGYYYPGKITS-DKGKNKYKVLFDDGYE 42 (122)
T ss_dssp --STT-EEEEESSTTSEEEEEEEEE-EETTTEEEEEETTS-E
T ss_pred CcccccEEEEEEccCCcccCceEee-cCCCCeEEEEecCCcc
Confidence 4799999999999888889999999 4677899999999986
No 8
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=94.01 E-value=0.061 Score=52.23 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=37.6
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
||-+++..|=+|..||+|+|+..+.+.+.-.|+|+.-.-. |.|.|.+|
T Consensus 71 vGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~---e~v~l~dL 118 (264)
T PF06003_consen 71 VGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNE---EEVNLSDL 118 (264)
T ss_dssp TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCe---Eeeehhhh
Confidence 9999999999999999999999999888778899775443 34545554
No 9
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=91.25 E-value=1.3 Score=46.65 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=45.0
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCC------CceeeeccCCCCCCcceeeeccCCCCcccccc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE------GRHALVYDINTADETWEWVNLKEISPEDIKWE 287 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~t------g~H~LvYD~g~~~EtwEwVdL~e~spedi~W~ 287 (371)
-||-+|.++|..|..||+|.|.+..... .++-|.|..-+..-- |||+...|....++..
T Consensus 55 ~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlD-EWV~~~rLdls~~e~~ 119 (450)
T PLN00104 55 EVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLD-EWVKLEQLDLDTVETV 119 (450)
T ss_pred ccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHh-hccCHhhccccccccc
Confidence 4999999999999999999999887633 356688987766311 6998888865555544
No 10
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=88.81 E-value=0.71 Score=34.62 Aligned_cols=49 Identities=31% Similarity=0.516 Sum_probs=38.2
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
||-+|.+.| .++.||+|.|.+-+...+ ..-|.|..-+..-- |||+.+.|
T Consensus 3 vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~D-eWV~~~~i 53 (55)
T PF11717_consen 3 VGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLD-EWVPESRI 53 (55)
T ss_dssp TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC--EEEETTTE
T ss_pred cCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCce-eeecHHHc
Confidence 788999999 999999999998877654 56689987777322 68876554
No 11
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=87.81 E-value=0.41 Score=46.86 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=32.2
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeecc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYD 263 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD 263 (371)
-||.||++-|+||..||++.|....+.++.-+|.++
T Consensus 92 ~vg~K~~A~~~ddg~~y~AtIe~ita~~~~~ai~f~ 127 (262)
T KOG3026|consen 92 KVGDKVQAVFSDDGQIYDATIEHITAMEGTVAIIFA 127 (262)
T ss_pred ccCCEEEEeecCCCceEEeehhhccCCCCceeEEEe
Confidence 489999999999999999999999998887777554
No 12
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=74.99 E-value=12 Score=37.36 Aligned_cols=39 Identities=10% Similarity=-0.181 Sum_probs=32.3
Q ss_pred CCCCCcCcCCccccceeeeccCCCCCceeeeeeeccCCC
Q 017436 217 NGPSEAATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNE 255 (371)
Q Consensus 217 ~~~~~~~~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~t 255 (371)
....+++..+..+++.++..|+-|+++|.-.+.-||..+
T Consensus 173 ~~~te~iit~~~~~~E~~~~l~~~~~~~~~p~~wvdl~~ 211 (273)
T KOG4675|consen 173 RKFTEAIITQYDAEKEGHHLLVPDINDCNDPWEWVDLRE 211 (273)
T ss_pred ccccccccccchhhhhhhhhcccccccccCCcccccccc
Confidence 345566777778999999999999999999999888743
No 13
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=69.69 E-value=5.3 Score=34.83 Aligned_cols=38 Identities=24% Similarity=0.487 Sum_probs=30.0
Q ss_pred cceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 230 GRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 230 GrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
|.+|-.+|..|+-||.|+|.++= ..+.-.|.|+.++..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~-~~~~~lV~f~~~~~~ 38 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV-SSGQFLVEFDDGDTQ 38 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc-CCCEEEEEECCCCEE
Confidence 67899999999999999999987 445555677566554
No 14
>PF15315 FRG2: Facioscapulohumeral muscular dystrophy candidate 2
Probab=68.47 E-value=20 Score=33.81 Aligned_cols=47 Identities=21% Similarity=0.464 Sum_probs=38.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhC
Q 017436 46 MQNDMATQIHSVEQDAYSSVLRAFKAQS-DAITWEKESLITELRKELR 92 (371)
Q Consensus 46 ~~~~~~~~Ih~LE~eAY~sVLrAF~AQS-~~LSWeKE~LLTeLR~eL~ 92 (371)
+...+..-|+.|--.-|..+.+.-+-|- .+||||+-.+|+.||--|.
T Consensus 111 lRKsLVtslR~~SEaIYqD~aq~~aQq~~spLt~EQl~~L~qL~gpL~ 158 (181)
T PF15315_consen 111 LRKSLVTSLRAMSEAIYQDLAQVQAQQHHSPLTWEQLSQLAQLRGPLC 158 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHhccHHH
Confidence 5568889999999999998887666553 3699999999999998774
No 15
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=64.36 E-value=7 Score=30.33 Aligned_cols=38 Identities=21% Similarity=0.453 Sum_probs=26.6
Q ss_pred CCceeeeeeeccCCCCceeeeccCCCCCC-----cceeeeccCC
Q 017436 241 NHFYEAVITDYNPNEGRHALVYDINTADE-----TWEWVNLKEI 279 (371)
Q Consensus 241 n~fYegvIt~Yn~~tg~H~LvYD~g~~~E-----twEwVdL~e~ 279 (371)
..||.|+|.+.+... +..|.|++-..++ .-|||+.+.|
T Consensus 18 gaWf~a~V~~~~~~~-~~~V~Y~~~~~~~~~~~~l~e~V~~~~i 60 (68)
T PF05641_consen 18 GAWFPATVLKENGDD-KYLVEYDDLPDEDGESPPLKEWVDARRI 60 (68)
T ss_dssp -EEEEEEEEEEETT--EEEEEETT-SS--------EEEEEGGGE
T ss_pred cEEEEEEEEEeCCCc-EEEEEECCcccccccccccEEEechheE
Confidence 679999999999876 8999997655531 3578877664
No 16
>TIGR02612 mob_myst_A mobile mystery protein A. Members of this protein family are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein B, a member of the Fic protein family (pfam02661). This protein is encoded by the upstream member of the gene pair and belongs to a family of helix-turn-helix DNA binding proteins (pfam01381).
Probab=64.18 E-value=11 Score=34.04 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 017436 56 SVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLS 103 (371)
Q Consensus 56 ~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~ 103 (371)
.|.++.|...|.+|+.. +.+++.++..|..+|+++++|.++=-+.+.
T Consensus 3 ~~~~~q~~~~l~~~~~~-~~~~~p~~~~Ir~~R~~lGmTq~eLAerlG 49 (150)
T TIGR02612 3 KLALRQLDQRLVALAGA-GAIQTPKEGWVRAIRKALGMSGAQLAGRLG 49 (150)
T ss_pred HHHHHHHHHHHHHHhhc-cccccCcHHHHHHHHHHcCCCHHHHHHHhC
Confidence 57788899999998774 789999999999999999999887665543
No 17
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.18 E-value=28 Score=32.41 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHhccCCCChHHH-------HHHHHHHHHhCCChHHHHHHH
Q 017436 49 DMATQIHSVEQDAY-SSVLRAFKAQSDAITWEKE-------SLITELRKELRVSDEEHRELL 102 (371)
Q Consensus 49 ~~~~~Ih~LE~eAY-~sVLrAF~AQS~~LSWeKE-------~LLTeLR~eL~IS~eEH~~~l 102 (371)
+-..+|..||.++- .++|-+|-| ...|+-+.. .-|.+|+.+|+||+++...-|
T Consensus 96 ~p~~EL~~LEnde~L~~LLdrLda-getLs~edQ~~VD~~LDRI~~LMe~LGl~~dddEdDl 156 (169)
T COG3078 96 SPQAELELLENDERLDALLDRLDA-GETLSAEDQQWVDAKLDRIDELMEKLGLSYDDDEDDL 156 (169)
T ss_pred CHHHHHHHhhhhHHHHHHHHHhhc-cCcccHHHHHHHHHHHHHHHHHHHHhCCccCCchHHH
Confidence 44578899998876 678888888 477775543 347899999999988875543
No 18
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=56.62 E-value=18 Score=31.90 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=33.2
Q ss_pred ccceeeeccCCCCCceeeeeeeccC-CCCceeeeccCCCCCCcc
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNP-NEGRHALVYDINTADETW 271 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~-~tg~H~LvYD~g~~~Etw 271 (371)
.|.+|...||+--.||.|+|..=.. ..+...|.||+.+..+..
T Consensus 74 ~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~ 117 (130)
T PF07039_consen 74 KGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGY 117 (130)
T ss_dssp TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSB
T ss_pred CCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCc
Confidence 6789999999999999999998743 447888999999887643
No 19
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein.; PDB: 1ZL8_B 1VA8_A 3LRA_A 3UIT_A 1Y74_D 1RSO_B.
Probab=48.64 E-value=44 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHH
Q 017436 82 SLITELRKELRVSDEEHRELLSKVNADDIILRIREW 117 (371)
Q Consensus 82 ~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~ 117 (371)
++|++|...+..+ .+...+|.+|-++++++.|++.
T Consensus 7 e~L~~L~~~~~~~-~~~~~eL~~lL~~p~~~aLl~~ 41 (56)
T PF02828_consen 7 ELLEELQSLSSAS-QEDAQELQQLLQSPHFQALLEV 41 (56)
T ss_dssp HHHHHHHHHTSST-HHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHhccCCC-hHHHHHHHHHHcCHHHHHHHHH
Confidence 6888999999998 7888899999999999999885
No 20
>PF14717 DUF4465: Domain of unknown function (DUF4465); PDB: 4E9K_A.
Probab=46.85 E-value=13 Score=34.90 Aligned_cols=43 Identities=26% Similarity=0.643 Sum_probs=24.7
Q ss_pred CCCCceeeeeeeccCC----CCceee-eccCCC--CCCcceeeeccCCCC
Q 017436 239 EDNHFYEAVITDYNPN----EGRHAL-VYDINT--ADETWEWVNLKEISP 281 (371)
Q Consensus 239 dDn~fYegvIt~Yn~~----tg~H~L-vYD~g~--~~EtwEwVdL~e~sp 281 (371)
.++.||+=+|+-||.+ +-+|-| .|..+. +-.+|.||||+.|..
T Consensus 104 ~~gD~fkl~i~G~d~~g~~~~ve~yLAdyr~~~~~iv~~W~~vDLssLg~ 153 (182)
T PF14717_consen 104 EDGDYFKLTITGYDADGSTGTVEFYLADYRNDKDYIVDDWQWVDLSSLGE 153 (182)
T ss_dssp -TT-EEEEEEEETTSS----EEEEEEEETTE----E--S-EEEE-GGG-E
T ss_pred CCCCEEEEEEEEecCccccceEEEEEeecccccceeecceeEEeccccCc
Confidence 3578999999999986 234444 555322 346799999998753
No 21
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=41.95 E-value=33 Score=39.01 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhH
Q 017436 51 ATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADD 109 (371)
Q Consensus 51 ~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De 109 (371)
..+|..|+-+|-+-|+.++-+ +.+-=++|.|+..+|..|+++-+||-+...+|...+
T Consensus 54 ~~~~e~ly~ealytvl~~~g~--~d~e~~~e~l~sy~~~~fg~~~~eh~~~~e~v~~~k 110 (1103)
T KOG1328|consen 54 KKQIEALYVEALYTITHKLGQ--GDVEESQESLYKYVRNAFGGDAAEHNALMEKVKQNK 110 (1103)
T ss_pred HHHHHHHhhhhHHhhhHhhcC--CcchhhhhHHHHHHHHHhCCCHhHhhhccccccCCC
Confidence 478899999999999999984 788888999999999999999999998887776554
No 22
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.37 E-value=1.4e+02 Score=28.06 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=46.0
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHhccCCCChHHHHHHH-HHHHHhC----CChHHHHHHHHHhchhHHHHHH---HHHh
Q 017436 49 DMATQIH--SVEQDAYSSVLRAFKAQSDAITWEKESLIT-ELRKELR----VSDEEHRELLSKVNADDIILRI---REWR 118 (371)
Q Consensus 49 ~~~~~Ih--~LE~eAY~sVLrAF~AQS~~LSWeKE~LLT-eLR~eL~----IS~eEH~~~l~~v~~De~i~~i---Re~r 118 (371)
.++.+++ +.|++++.+-.=|=+- ..++-|||..|. +|++|++ +|-+|-.++-...-++-.+.-| |+|-
T Consensus 75 ~Ler~lRl~R~E~~~WN~dFWa~hN--~~F~~eKedFi~~kL~~EsG~~~~vsA~ems~FYk~FL~kn~~~hm~YNr~WY 152 (178)
T KOG4094|consen 75 ELERQLRLAREELNQWNSDFWAEHN--QLFDREKEDFIERKLQQESGRLEHVSANEMSEFYKDFLNKNHVAHMAYNREWY 152 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHhhhHHHHHHHhHHHH
Confidence 4555544 5677888776655544 367889999994 7899998 7888877766655555444444 6664
No 23
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=40.74 E-value=19 Score=30.23 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=13.2
Q ss_pred ccchhHHHHHHHHHH
Q 017436 351 HTETLIKEVCGQMKK 365 (371)
Q Consensus 351 ~t~slikeVervf~~ 365 (371)
.|+-|+||||.||.|
T Consensus 21 dte~llkEiedVYKK 35 (82)
T PF06260_consen 21 DTEGLLKEIEDVYKK 35 (82)
T ss_pred chHHHHHHHHHHHHH
Confidence 488999999999876
No 24
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=38.94 E-value=35 Score=30.24 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=35.7
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC-----CCcceeeec
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA-----DETWEWVNL 276 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~-----~EtwEwVdL 276 (371)
=|+++...+|-+.....++|.+- .+.+.|.||+. .||||-++|
T Consensus 48 tG~~~e~~f~~~~kve~a~ie~~-----~~q~lY~dg~~~~FMD~etyeq~~v 95 (131)
T COG0231 48 TGKKVEKTFKADDKVEVAIVERK-----TAQYLYIDGDFYVFMDLETYEQYEL 95 (131)
T ss_pred CCCEEEEEEcCCCEEEEeEEeee-----eEEEEEcCCCeEEEccCCCceEEEe
Confidence 47789999999999999998764 46789999998 699998844
No 25
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=38.55 E-value=44 Score=35.76 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=28.3
Q ss_pred CcCCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC-Ccceee
Q 017436 223 ATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD-ETWEWV 274 (371)
Q Consensus 223 ~~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~-EtwEwV 274 (371)
+.+.+|= -.-+.||=|++.-+.=+--.|..++..-++.|=..-+. =+| .|
T Consensus 53 I~v~~l~-~q~~~yiEdE~~~~~~i~a~w~snn~~~A~p~f~~Pvp~G~~-sV 103 (465)
T PF01690_consen 53 ISVRSLN-SQRMRYIEDENWNWVNIDAGWYSNNSVKAIPMFVFPVPKGKW-SV 103 (465)
T ss_pred eEeeccC-ceeEEEEecccceeEEecceeEecCcceeeeEEEEecCCceE-EE
Confidence 4444443 34446786665555555558888888777655444443 334 45
No 26
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=34.47 E-value=63 Score=24.68 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 017436 67 RAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 105 (371)
Q Consensus 67 rAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v 105 (371)
.|+.. |=++|-++.-|++|-++|+||...=.+.|+++
T Consensus 11 ~A~~~--GYfd~PR~~tl~elA~~lgis~st~~~~LRra 47 (53)
T PF04967_consen 11 AAYEL--GYFDVPRRITLEELAEELGISKSTVSEHLRRA 47 (53)
T ss_pred HHHHc--CCCCCCCcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444 88999999999999999999998877777776
No 27
>PRK05244 Der GTPase activator; Provisional
Probab=34.17 E-value=94 Score=29.38 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHH-------HHHHHHHHhCCChHHHHH
Q 017436 50 MATQIHSVEQDAYSSVLRAFKAQSDAITWEKES-------LITELRKELRVSDEEHRE 100 (371)
Q Consensus 50 ~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~-------LLTeLR~eL~IS~eEH~~ 100 (371)
-+.+|-.||-++.-.+|-.-.-....|+-+-.. -|..|+.+|+|++++-.+
T Consensus 96 pEqEL~~LEnD~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~LM~~LGI~~edd~~ 153 (177)
T PRK05244 96 PEQELEKLENDERLNALLDRLEAGETLSAEDQKWVDEKLDRIDELMEKLGISDDDDEE 153 (177)
T ss_pred HHHHHHHHhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 378999999999966666555556778755433 368899999999887544
No 28
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=32.68 E-value=1.8e+02 Score=20.68 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHH-HHHHHHhCCChHHHHHHHHHh
Q 017436 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWEK-ESLI-TELRKELRVSDEEHRELLSKV 105 (371)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeK-E~LL-TeLR~eL~IS~eEH~~~l~~v 105 (371)
++..=|..+...-|. .+|..+ .++-.. -.+. .+..++++|.+..|+..|.+.
T Consensus 8 ~v~~wL~~~g~~~y~---~~f~~~--~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~ 61 (68)
T smart00454 8 SVADWLESIGLEQYA---DNFRKN--GIDGALLLLLTSEEDLKELGITKLGHRKKILKA 61 (68)
T ss_pred HHHHHHHHCChHHHH---HHHHHC--CCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHH
Confidence 445555555555554 455553 333332 2333 566789999999999966444
No 29
>PRK09618 flgD flagellar basal body rod modification protein; Provisional
Probab=32.61 E-value=59 Score=29.61 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=30.0
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDIN 265 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g 265 (371)
.+||||.|.+- =+|...+.|+|+.-.-.+|...+++++|
T Consensus 88 ~slVGk~V~~~-~~~g~~~tG~V~~V~~~~g~~~~~~v~G 126 (142)
T PRK09618 88 SELIGKEVEWE-GEDGEIVSGTVTSVKQKDGDYPLVLDNG 126 (142)
T ss_pred HHHhCCEEEEE-eCCCCEEEEEEEEEEEcCCcEEEEEECC
Confidence 56999999854 3456789999998777778777777666
No 30
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=31.09 E-value=47 Score=38.29 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=30.7
Q ss_pred ccceeeeccCCC----CCceeeeeeeccCCC--------CceeeeccCCCC
Q 017436 229 IGRKVWTRWPED----NHFYEAVITDYNPNE--------GRHALVYDINTA 267 (371)
Q Consensus 229 VGrrVkv~WPdD----n~fYegvIt~Yn~~t--------g~H~LvYD~g~~ 267 (371)
++-+++|||-|. ..||||.|-+-.|.+ .++.|+||-++.
T Consensus 981 ~~d~crvwwrda~~e~g~WWeG~ils~~pksp~fpdSpwery~v~~~~~e~ 1031 (1113)
T KOG0644|consen 981 CRDKCRVWWRDAGEEDGAWWEGRILSVKPKSPDFPDSPWERYIVRYDNTET 1031 (1113)
T ss_pred cccceeEEEccCCCcCCceeeeeeeeccCCCCCCCCCcceeEEEEecCCcc
Confidence 466999999775 679999998665554 688899998844
No 31
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=30.66 E-value=58 Score=24.13 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc-C-CCChHHHHHHHHHHHHhCCChHHHHHHHH
Q 017436 48 NDMATQIHSVEQDAYSSVLRAFKAQS-D-AITWEKESLITELRKELRVSDEEHRELLS 103 (371)
Q Consensus 48 ~~~~~~Ih~LE~eAY~sVLrAF~AQS-~-~LSWeKE~LLTeLR~eL~IS~eEH~~~l~ 103 (371)
.++..=|..+.++.|...++...-.+ . -+.... .+|+ +++|++..||.-+-
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~----~~L~-~lGI~~~~~r~kll 59 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTE----EDLK-ELGITNLGHRRKLL 59 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCH----HHHH-HTTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCH----HHHH-HcCCCCHHHHHHHH
Confidence 46777788888888887777665531 1 122222 3554 99999999987443
No 32
>PF14772 NYD-SP28: Sperm tail
Probab=29.69 E-value=1.1e+02 Score=25.34 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHh
Q 017436 79 EKESLITELRKELRVSDEEHRELLSKV 105 (371)
Q Consensus 79 eKE~LLTeLR~eL~IS~eEH~~~l~~v 105 (371)
.|..||.+|..+|.-.+++|...|++=
T Consensus 73 ~Kd~lI~~L~~eL~~~deqy~~~lr~q 99 (104)
T PF14772_consen 73 RKDALIKELQQELKEADEQYVKALRKQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488889999999999988888877654
No 33
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=29.13 E-value=1.7e+02 Score=24.25 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 017436 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 105 (371)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v 105 (371)
++...|.+|+-.-|+.||+-+|- +.++|+ +...+|+||...=-.+.+++
T Consensus 47 ei~~~I~~l~d~~~r~iL~~~Yi--~~~~~~------~I~~~l~~S~~t~yr~~~~A 95 (100)
T PF07374_consen 47 EIRRAINKLEDPDERLILRMRYI--NKLTWE------QIAEELNISRRTYYRIHKKA 95 (100)
T ss_pred HHHHHHHHccChhHHHHHHHHHH--cCCCHH------HHHHHHCCCHHHHHHHHHHH
Confidence 45567778888889999999999 468997 46778999965544444433
No 34
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=28.36 E-value=3e+02 Score=24.87 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=47.5
Q ss_pred CCCcccchhhHHHHHHHHH----HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHH
Q 017436 40 SASLPRMQNDMATQIHSVE----QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRE 100 (371)
Q Consensus 40 ~~py~r~~~~~~~~Ih~LE----~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~ 100 (371)
..||...-.+++.++.+-+ .+|+...+..+... ..|+-+..++|.+|=+.|+.||.+...
T Consensus 63 ~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~-~~L~~~d~e~L~~lg~~LG~~D~~~Q~ 126 (170)
T PF09548_consen 63 EGPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKE-SALKKEDKEILLELGKSLGYSDREMQE 126 (170)
T ss_pred cchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhc-CCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 3455555567788888777 67777777777764 689999999999999999999988765
No 35
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=27.23 E-value=1.3e+02 Score=29.30 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=21.5
Q ss_pred CCCCCCCCCCcchhhhhhcccccccccCcCCCCCCCCCCCCCC
Q 017436 132 QPVHDPAPSPTVSASRKKTKTSQSVASLSTGAPSPGMHPSVQP 174 (371)
Q Consensus 132 q~~hd~~psPt~~asrKkqK~s~s~~s~~~g~psp~~~p~~qp 174 (371)
...|+..|+ |-++++|+ ++|=.+|-+|.|+++|+.-|
T Consensus 145 k~~~s~sp~-T~sa~~~~-----s~p~~sfmpppPP~pp~i~p 181 (218)
T KOG4327|consen 145 KSENSRSPG-TKSANIKK-----SAPWNSFMPPPPPMPPPICP 181 (218)
T ss_pred cccccCCCC-Cccccccc-----cCCccccCCCCCCCCcccCC
Confidence 345666665 33455542 44556677777777666544
No 36
>COG2944 Predicted transcriptional regulator [Transcription]
Probab=27.14 E-value=96 Score=27.01 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhcCC
Q 017436 84 ITELRKELRVSDEEHRELLSKVNADDIILRIREWRKASGL 123 (371)
Q Consensus 84 LTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~gg~ 123 (371)
|..||+.|++|.++-..+|.-- +.++|+|.++.--
T Consensus 49 Ik~iRe~~~lSQ~vFA~~L~vs-----~~Tv~~WEqGr~k 83 (104)
T COG2944 49 IKAIREKLGLSQPVFARYLGVS-----VSTVRKWEQGRKK 83 (104)
T ss_pred HHHHHHHhCCCHHHHHHHHCCC-----HHHHHHHHcCCcC
Confidence 6689999999999988887544 7899999887643
No 37
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=26.66 E-value=1e+02 Score=28.99 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH-------HHHHHHHHHhCCChHHHHH
Q 017436 49 DMATQIHSVEQDAYSSVLRAFKAQSDAITWEKE-------SLITELRKELRVSDEEHRE 100 (371)
Q Consensus 49 ~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE-------~LLTeLR~eL~IS~eEH~~ 100 (371)
.-+.+|-.||-++.-..|-.-.-....||-+-. .-|..|+.+|+|++++-.+
T Consensus 96 spEqEL~~LEnD~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~LGi~~ddd~e 154 (169)
T PF04220_consen 96 SPEQELEMLENDERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEELGIEDDDDDE 154 (169)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 456889999999986665555444677775443 3368999999999887763
No 38
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=26.65 E-value=1.6e+02 Score=23.86 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHH
Q 017436 60 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELL 102 (371)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l 102 (371)
+-+.-+|++++...+.++ ..+|+..+...+++++|+=.+.+
T Consensus 4 ~~~~piL~~L~~~g~~~~--~~ei~~~v~~~~~ls~e~~~~~~ 44 (92)
T PF14338_consen 4 ELMPPILEALKDLGGSAS--RKEIYERVAERFGLSDEERNERL 44 (92)
T ss_pred HHHHHHHHHHHHcCCCcC--HHHHHHHHHHHhCCCHHHHHHHc
Confidence 446789999999666555 56899999999999999655544
No 39
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=26.53 E-value=87 Score=26.61 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=43.7
Q ss_pred CCccccceeeeccCCCCCceeeeeeeccCCCCceee--eccCCCC-----------CCcceeeeccCCCCcccccc
Q 017436 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHAL--VYDINTA-----------DETWEWVNLKEISPEDIKWE 287 (371)
Q Consensus 225 ~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~L--vYD~g~~-----------~EtwEwVdL~e~spedi~W~ 287 (371)
.+++||++|..-=-.| -=|||++...|++...=.| |+-.|++ .+.|++|-++.-.=.|++-.
T Consensus 3 ~~~~IGs~ISlisk~~-iRYeG~L~~Id~~~sTItL~nVr~~GtE~R~~~~~ipp~~~v~~~I~Fr~sDIkdL~v~ 77 (96)
T PF12701_consen 3 ADPYIGSKISLISKSD-IRYEGILYSIDTEDSTITLKNVRSFGTEGRPTDREIPPSDEVYDYIVFRGSDIKDLKVI 77 (96)
T ss_dssp CCCCTTCEEEEEETTT-EEEEEEEEEEETTTTEEEEEEEEETTETTSS-SS---C-CSSSSEEEEETTTEEEEEEC
T ss_pred cccccCCEEEEEECCC-cEEEEEEEEEcCCCCEEEeeeeeecCcCCCCcCcccCCCCceeeEEEEEccccceEEEE
Confidence 3789999998776665 8899999999998865554 5556664 36688885554444444444
No 40
>PF04717 Phage_base_V: Phage-related baseplate assembly protein; InterPro: IPR006531 This domain occurs in a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail []. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. It is also found in Vgr-related proteins. Genes encoding type VI secretion systems (T6SS) are widely distributed in pathogenic Gram-negative bacterial species. In Vibrio cholerae, T6SS have been found to secrete three related proteins extracellularly, VgrG-1, VgrG-2, and VgrG-3. VgrG-1 can covalently cross-link actin in vitro, and this activity was used to demonstrate that V. cholerae can translocate VgrG-1 into macrophages by a T6SS-dependent mechanism. VgrG-related proteins likely assemble into a trimeric complex that is analogous to that formed by the two trimeric proteins gp27 and gp5 that make up the baseplate "tail spike" of Escherichia coli bacteriophage T4. The VgrG components of the T6SS apparatus might assemble a "cell-puncturing device" analogous to phage tail spikes to deliver effector protein domains through membranes of target host cells []. Gp5 is an integral component of the virion baseplate of bacteriophage T4. T4 Gp5 consists of 3 domains connected via long linkers: the N-terminal oligosaccharide/oligonucleotide-binding (OB)-fold domain, the middle lysozyme domain, and the C-terminal triplestranded-helix. The equivalent of the Gp5 OB-fold domain in the structure of VgrG is the domain of unknown function comprising residues 380-470 and conserved in all known VgrGs. This entry represents the OB-fold domain which consists of a 5-stranded antiparallel-barrel with a Greek-key topology [].; PDB: 3AQJ_C 3QR8_A 2P5Z_X.
Probab=24.84 E-value=67 Score=25.14 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=21.1
Q ss_pred eeeeeccCCCCceeeeccCCCCCCcceeee
Q 017436 246 AVITDYNPNEGRHALVYDINTADETWEWVN 275 (371)
Q Consensus 246 gvIt~Yn~~tg~H~LvYD~g~~~EtwEwVd 275 (371)
|+|++.|+.+++-+|.|++....+| .|+.
T Consensus 1 G~V~~v~~~~grvrV~~~~~~~~~s-~Wl~ 29 (79)
T PF04717_consen 1 GTVTAVDPDKGRVRVRFPDDGDIVS-DWLP 29 (79)
T ss_dssp EEEEEEETTTTEEEEE-B-CTTEEE-EEEE
T ss_pred CeEEEEECCCCEEEEEEecCCCccc-eEEE
Confidence 7899999999999999965555555 5773
No 41
>PRK11546 zraP zinc resistance protein; Provisional
Probab=24.71 E-value=1.2e+02 Score=27.75 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchh
Q 017436 59 QDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNAD 108 (371)
Q Consensus 59 ~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~D 108 (371)
+.++..+...|++++ .+||.+|.--..|=..++..-+.|
T Consensus 49 Qa~~q~I~~~f~~~t-----------~~LRqqL~aKr~ELnALl~~~~pD 87 (143)
T PRK11546 49 QAAWQKIHNDFYAQT-----------SALRQQLVSKRYEYNALLTANPPD 87 (143)
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 444555555555542 344444444444444444444444
No 42
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=23.67 E-value=2.6e+02 Score=24.22 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=47.0
Q ss_pred HHHHHhccCCCChHHHHHHHHHHHHhCCCh---------HHHHHHHHHh--------chhHHHHHHHHHhhhcCC
Q 017436 66 LRAFKAQSDAITWEKESLITELRKELRVSD---------EEHRELLSKV--------NADDIILRIREWRKASGL 123 (371)
Q Consensus 66 LrAF~AQS~~LSWeKE~LLTeLR~eL~IS~---------eEH~~~l~~v--------~~De~i~~iRe~r~~gg~ 123 (371)
+.....+....+|.-...+++|..+++|+| |.=|-+|+++ ..|+.++-|+.+-+..|.
T Consensus 7 ~~~~~~~~~~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~~~pd~~Hl~~LA~ekgV 81 (100)
T PF15608_consen 7 AEWLSQQDRAPTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDPDDPDLAHLLLLAEEKGV 81 (100)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCCCCccHHHHHHHHHHcCC
Confidence 445556667799999999999999999998 6778899987 566888888888776664
No 43
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.60 E-value=8.9 Score=45.22 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=42.6
Q ss_pred cCcCCccccceeeeccCCCCCceee-eeeeccCCCCceeeeccCCCCC
Q 017436 222 AATYNPLIGRKVWTRWPEDNHFYEA-VITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 222 ~~~~~sLVGrrVkv~WPdDn~fYeg-vIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.+...++||..+..||+.|+.||.+ .|..|+.....|.++|++.++.
T Consensus 982 ~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~ 1029 (1266)
T KOG1525|consen 982 LAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEE 1029 (1266)
T ss_pred hhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhh
Confidence 4566899999999999999999999 7889999999999999999984
No 44
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.52 E-value=1.9e+02 Score=17.88 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhccCCCChHHH-HHHHHHHHHhCC
Q 017436 60 DAYSSVLRAFKAQSDAITWEKE-SLITELRKELRV 93 (371)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE-~LLTeLR~eL~I 93 (371)
..|..+|+||.... .|+.- .++.++++ .+|
T Consensus 2 ~ty~~ll~a~~~~g---~~~~a~~~~~~M~~-~gv 32 (34)
T PF13812_consen 2 HTYNALLRACAKAG---DPDAALQLFDEMKE-QGV 32 (34)
T ss_pred cHHHHHHHHHHHCC---CHHHHHHHHHHHHH-hCC
Confidence 47999999999953 45554 34444443 555
No 45
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.39 E-value=97 Score=30.75 Aligned_cols=66 Identities=21% Similarity=0.208 Sum_probs=48.3
Q ss_pred cCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHhccCCCChHHHHHHHHHHHH----------------hCCChHHHHHH
Q 017436 39 GSASLPRMQNDMATQIHSVEQDAY-SSVLRAFKAQSDAITWEKESLITELRKE----------------LRVSDEEHREL 101 (371)
Q Consensus 39 ~~~py~r~~~~~~~~Ih~LE~eAY-~sVLrAF~AQS~~LSWeKE~LLTeLR~e----------------L~IS~eEH~~~ 101 (371)
..+||.|-+..-..-++-+-..|| ...|+.|.+= .+=..|+.+-|++||-. .+|.+.|.++-
T Consensus 159 s~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~-~ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~ 237 (247)
T COG1212 159 APIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVAL-KPSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLER 237 (247)
T ss_pred CCCCCcccccCCcchhheeehHHhHHHHHHHHHhc-CCchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHH
Confidence 578999886211356888999999 5788888884 56778999999999965 45666666665
Q ss_pred HHHh
Q 017436 102 LSKV 105 (371)
Q Consensus 102 l~~v 105 (371)
.+++
T Consensus 238 v~~~ 241 (247)
T COG1212 238 VRKI 241 (247)
T ss_pred HHHH
Confidence 4444
No 46
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=22.00 E-value=1.1e+02 Score=28.30 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.1
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 017436 67 RAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKV 105 (371)
Q Consensus 67 rAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v 105 (371)
.||.. |=+.|-+..=|.+|-++|+||.-.=.+.|+++
T Consensus 166 ~A~~~--GYFd~PR~~~l~dLA~~lGISkst~~ehLRrA 202 (215)
T COG3413 166 LAYKM--GYFDYPRRVSLKDLAKELGISKSTLSEHLRRA 202 (215)
T ss_pred HHHHc--CCCCCCccCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45555 88999999999999999999998888888777
No 47
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=21.72 E-value=1.1e+02 Score=27.04 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=35.2
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC-----CCcceeeeccCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA-----DETWEWVNLKEI 279 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~-----~EtwEwVdL~e~ 279 (371)
=|+++-..|+.........|. .....+.|.+++. +||||-++|..-
T Consensus 51 tG~~~e~~~~s~d~~e~~~ve-----~~~~qylY~dg~~~~fMd~eTyeq~~i~~~ 101 (129)
T PRK03999 51 DGQKRSLVQPVDAKVEVPIIE-----KKTGQVLSIMGDVVQLMDLETYETFEIPIP 101 (129)
T ss_pred CCCEEEEEecCCCceeeeeEE-----eEEEEEEEecCCEEEEecCCCceEEEecCC
Confidence 577889999999888887773 3445688988866 589998876643
No 48
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=21.43 E-value=31 Score=37.53 Aligned_cols=7 Identities=71% Similarity=1.403 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 017436 319 AGRGRGT 325 (371)
Q Consensus 319 ~grgrg~ 325 (371)
+|||||.
T Consensus 545 gg~grg~ 551 (556)
T PF05918_consen 545 GGRGRGR 551 (556)
T ss_dssp -------
T ss_pred CCCCCcc
Confidence 4445443
No 49
>PRK05337 beta-hexosaminidase; Provisional
Probab=20.19 E-value=1.7e+02 Score=29.65 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=37.3
Q ss_pred CCCCCCCcccccCCCcccchhhHHHHHHHHHHHHHHHHHHH-----------HHhc-cCCCChHHHHHHHH-HHHHhC--
Q 017436 28 RPTGNGRSAVIGSASLPRMQNDMATQIHSVEQDAYSSVLRA-----------FKAQ-SDAITWEKESLITE-LRKELR-- 92 (371)
Q Consensus 28 ~~~gng~~~~~~~~py~r~~~~~~~~Ih~LE~eAY~sVLrA-----------F~AQ-S~~LSWeKE~LLTe-LR~eL~-- 92 (371)
+|-|+|......-+-.+ ....-..+|++-++..|...+++ |-+- ..+-+.. ..+|++ ||+||+
T Consensus 166 HFpG~G~~~~dsh~~~~-~~~~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S-~~~l~~lLR~elGF~ 243 (337)
T PRK05337 166 HFPGHGAVEADSHVETP-VDERPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFS-RYWLQDILRQELGFD 243 (337)
T ss_pred ccCCCCCCcCCCCCCCC-CCCCCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCC-HHHHHHHHHHhcCCC
Confidence 78888876422222211 11122356677789999888875 2111 1123333 456765 899987
Q ss_pred ---CChHH
Q 017436 93 ---VSDEE 97 (371)
Q Consensus 93 ---IS~eE 97 (371)
|||+-
T Consensus 244 G~ViSD~l 251 (337)
T PRK05337 244 GVIFSDDL 251 (337)
T ss_pred EEEEecch
Confidence 46653
No 50
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=20.13 E-value=51 Score=31.76 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeeccCCCCceeeec--cCCCCCCcceeeeccCCCCcc-ccccCCCCCcc
Q 017436 248 ITDYNPNEGRHALVY--DINTADETWEWVNLKEISPED-IKWEGDEPGIS 294 (371)
Q Consensus 248 It~Yn~~tg~H~LvY--D~g~~~EtwEwVdL~e~sped-i~W~~e~p~i~ 294 (371)
+.+||..+ .+...+ +..-.++++-|||+...++|| ++|..+.-++.
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~Widl~~p~~~e~~~~l~~~~~l~ 51 (318)
T TIGR00383 3 AIAIEKSR-LIKIPFFEEFSQELNTVLWIDLIEPTDEETLAKLGQFFAIH 51 (318)
T ss_pred EEEEcccc-ceEecchhhhcCCCCceEEEEccCCCcHHHHHHHHHHcCcC
Confidence 45677764 223333 222346778899999999999 89987666553
Done!