Query 017436
Match_columns 371
No_of_seqs 148 out of 167
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 99.9 3.7E-26 1.3E-30 190.7 10.2 74 47-121 15-88 (102)
2 2fmm_E Protein EMSY; ENT domai 99.9 7.4E-25 2.5E-29 190.0 9.7 73 47-120 7-79 (133)
3 2dig_A Lamin-B receptor; tudor 97.3 0.00013 4.4E-09 57.1 3.3 40 229-268 15-54 (68)
4 2l8d_A Lamin-B receptor; DNA b 97.3 0.00013 4.6E-09 56.7 3.1 40 229-268 12-51 (66)
5 2equ_A PHD finger protein 20-l 97.2 0.00038 1.3E-08 54.8 5.1 53 226-281 9-61 (74)
6 1mhn_A SurviVal motor neuron p 97.0 0.00065 2.2E-08 50.4 4.0 53 229-281 6-58 (59)
7 2g3r_A Tumor suppressor P53-bi 96.9 0.00053 1.8E-08 59.0 3.4 42 226-268 4-45 (123)
8 3p8d_A Medulloblastoma antigen 96.8 0.00085 2.9E-08 52.3 3.5 39 228-268 8-46 (67)
9 4a4f_A SurviVal of motor neuro 96.8 0.0015 5.3E-08 49.2 4.8 52 225-279 7-58 (64)
10 2ldm_A Uncharacterized protein 95.6 0.00032 1.1E-08 56.5 0.0 38 229-268 9-46 (81)
11 3qii_A PHD finger protein 20; 96.6 0.0013 4.4E-08 53.5 3.5 41 226-268 21-61 (85)
12 1g5v_A SurviVal motor neuron p 96.5 0.002 7E-08 52.1 4.2 52 227-281 11-62 (88)
13 3s6w_A Tudor domain-containing 96.4 0.0028 9.7E-08 45.9 4.0 48 229-279 4-51 (54)
14 1ssf_A Transformation related 96.4 0.0023 8E-08 57.0 4.1 42 226-268 8-49 (156)
15 3pnw_C Tudor domain-containing 96.3 0.0027 9.3E-08 49.9 3.5 56 227-282 18-73 (77)
16 2eqj_A Metal-response element- 96.2 0.0036 1.2E-07 48.8 3.6 49 228-281 15-63 (66)
17 2d9t_A Tudor domain-containing 96.1 0.005 1.7E-07 48.2 4.2 57 226-282 9-65 (78)
18 2m0o_A PHD finger protein 1; t 95.5 0.054 1.8E-06 43.5 8.0 50 227-281 27-76 (79)
19 4hcz_A PHD finger protein 1; p 94.6 0.028 9.6E-07 42.8 3.8 49 228-281 5-53 (58)
20 2eko_A Histone acetyltransfera 94.4 0.14 4.9E-06 41.4 7.6 65 226-291 9-78 (87)
21 2xk0_A Polycomb protein PCL; t 94.3 0.068 2.3E-06 42.0 5.4 47 226-279 15-61 (69)
22 2e5q_A PHD finger protein 19; 93.0 0.092 3.2E-06 40.6 4.0 51 228-283 9-59 (63)
23 3fdr_A Tudor and KH domain-con 92.9 0.072 2.5E-06 42.1 3.4 55 226-281 27-81 (94)
24 2eqk_A Tudor domain-containing 92.5 0.14 4.7E-06 41.6 4.5 45 224-268 19-63 (85)
25 2diq_A Tudor and KH domain-con 92.2 0.085 2.9E-06 42.9 3.1 55 226-281 32-86 (110)
26 2rnz_A Histone acetyltransfera 92.0 0.83 2.9E-05 37.5 8.7 58 228-288 27-87 (94)
27 2e5p_A Protein PHF1, PHD finge 90.7 0.19 6.5E-06 39.4 3.4 49 228-281 11-59 (68)
28 3h8z_A FragIle X mental retard 90.4 0.28 9.6E-06 42.2 4.6 49 226-277 60-112 (128)
29 1wgs_A MYST histone acetyltran 89.9 1.5 5E-05 37.7 8.7 50 228-279 14-67 (133)
30 2ro0_A Histone acetyltransfera 88.0 0.47 1.6E-05 38.6 4.1 58 228-288 25-85 (92)
31 2wac_A CG7008-PA; unknown func 87.2 0.45 1.5E-05 41.6 3.8 53 227-281 52-104 (218)
32 3ntk_A Maternal protein tudor; 86.7 0.38 1.3E-05 41.7 3.0 53 227-282 48-100 (169)
33 2lcc_A AT-rich interactive dom 83.5 0.61 2.1E-05 36.6 2.6 51 228-279 7-61 (76)
34 2eqm_A PHD finger protein 20-l 83.2 3.5 0.00012 33.0 7.0 48 228-277 21-68 (88)
35 3dlm_A Histone-lysine N-methyl 81.8 0.91 3.1E-05 42.3 3.4 42 227-268 69-114 (213)
36 2f5k_A MORF-related gene 15 is 76.7 2.8 9.5E-05 34.8 4.4 45 228-275 24-70 (102)
37 2bud_A Males-absent on the fir 74.1 9.1 0.00031 31.4 6.8 55 223-279 11-70 (92)
38 4b9w_A TDRD1, tudor domain-con 73.3 3.6 0.00012 36.2 4.6 41 226-267 65-106 (201)
39 2qqr_A JMJC domain-containing 71.4 1.9 6.4E-05 36.8 2.2 48 228-285 7-54 (118)
40 2hqx_A P100 CO-activator tudor 70.7 2.7 9.2E-05 37.8 3.3 54 227-282 66-119 (246)
41 4b9x_A TDRD1, tudor domain-con 69.4 3.5 0.00012 37.1 3.7 39 228-267 67-106 (226)
42 1b34_A Protein (small nuclear 68.7 4.4 0.00015 33.8 3.9 33 225-258 7-39 (119)
43 2xdp_A Lysine-specific demethy 67.8 1.6 5.6E-05 37.4 1.1 47 228-284 8-54 (123)
44 3sd4_A PHD finger protein 20; 59.6 14 0.00048 27.8 4.9 47 228-276 14-60 (69)
45 3ask_A E3 ubiquitin-protein li 59.3 9.7 0.00033 35.5 4.7 58 229-287 5-74 (226)
46 3bdl_A Staphylococcal nuclease 52.6 9.1 0.00031 39.0 3.6 54 226-281 411-464 (570)
47 2lrq_A Protein MRG15, NUA4 com 56.5 3.2 0.00011 33.1 0.0 45 228-275 14-60 (85)
48 1y96_A Gemin6, SIP2, GEM-assoc 50.1 6.1 0.00021 31.9 1.5 47 224-273 11-57 (86)
49 2l2l_A Transcriptional repress 44.8 17 0.00058 26.0 2.9 15 79-93 5-19 (43)
50 4e9k_A Hypothetical protein; P 42.5 16 0.00055 34.6 3.3 40 240-280 167-207 (241)
51 3m9q_A Protein MALE-specific l 41.3 20 0.00068 29.6 3.3 45 228-274 21-76 (101)
52 3mea_A SAGA-associated factor 41.0 28 0.00097 31.4 4.5 40 229-268 119-159 (180)
53 2ou3_A Tellurite resistance pr 36.6 1.5E+02 0.005 25.0 8.2 55 61-116 97-151 (161)
54 3mp6_A MBP, SGF29, maltose-bin 34.4 36 0.0012 33.5 4.5 38 229-267 460-497 (522)
55 3rpp_A Glutathione S-transfera 33.1 79 0.0027 28.0 6.2 60 57-118 113-172 (234)
56 1r4w_A Glutathione S-transfera 31.0 1.1E+02 0.0039 26.4 6.8 57 60-118 116-172 (226)
57 3m9p_A MALE-specific lethal 3 29.8 42 0.0014 28.2 3.5 47 226-274 19-76 (110)
58 1ucv_A Ephrin type-A receptor 29.3 63 0.0022 24.6 4.3 60 48-118 8-70 (81)
59 2vc8_A Enhancer of mRNA-decapp 27.7 60 0.0021 26.2 3.9 36 225-260 4-39 (84)
60 2xdp_A Lysine-specific demethy 27.1 40 0.0014 28.7 3.0 39 227-267 65-103 (123)
61 3nvo_A Zinc transport protein 25.4 13 0.00043 33.4 -0.5 44 251-294 22-65 (264)
62 3h8z_A FragIle X mental retard 25.1 87 0.003 26.7 4.7 30 233-265 8-37 (128)
63 2lcd_A AT-rich interactive dom 30.8 15 0.00052 31.4 0.0 39 228-268 58-96 (118)
64 3o9x_A Uncharacterized HTH-typ 22.5 1.6E+02 0.0053 23.4 5.6 34 83-121 75-108 (133)
65 1ytr_A Bacteriocin plantaricin 22.0 32 0.0011 22.0 1.1 14 352-365 10-23 (26)
66 2qqr_A JMJC domain-containing 21.2 60 0.0021 27.5 2.9 39 227-267 64-102 (118)
67 1v85_A Similar to ring finger 20.9 1.5E+02 0.0052 22.9 5.1 52 48-104 23-79 (91)
68 4egw_A Magnesium transport pro 20.4 8.1 0.00028 35.3 -2.8 25 268-292 47-71 (280)
69 3pgw_B SM B; protein-RNA compl 20.3 1.9E+02 0.0065 27.1 6.4 32 224-256 8-39 (231)
70 4fzm_A Bacteriocin; phosphatas 20.0 2.8E+02 0.0097 26.7 7.6 49 14-63 4-55 (284)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=99.93 E-value=3.7e-26 Score=190.75 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhc
Q 017436 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS 121 (371)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~g 121 (371)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++++|+.|++||++..+.
T Consensus 15 ~~e~~~~l~~LEleAY~svlrAf~AqG-~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 15 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 359999999999999999999999995 59999999999999999999999999999999999999999998765
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=99.91 E-value=7.4e-25 Score=190.01 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhh
Q 017436 47 QNDMATQIHSVEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWRKA 120 (371)
Q Consensus 47 ~~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~ 120 (371)
.++++.+||+||++||++||+||+||+ +||||||+|||+||++||||||||+++|+++.+|+.|++||++..+
T Consensus 7 ~~e~~~~lr~LEleAY~svl~Af~AqG-~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g 79 (133)
T 2fmm_E 7 RDECKRILRKLELEAYAGVISALRAQG-DLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSG 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcC
Confidence 469999999999999999999999995 5999999999999999999999999999999999999999998733
No 3
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.31 E-value=0.00013 Score=57.07 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=36.5
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
||..|+-+||-|+.||++.|++++...-.+.|.|.+++.+
T Consensus 15 vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e 54 (68)
T 2dig_A 15 DGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTEL 54 (68)
T ss_dssp SSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEE
T ss_pred cCCEEEEEccCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 7889999999999999999999998888999999996665
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.28 E-value=0.00013 Score=56.73 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=36.6
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
||-.|.-+||-|+.||++.|++++..+-.+.|.|-+++.+
T Consensus 12 vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e 51 (66)
T 2l8d_A 12 DGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTEL 51 (66)
T ss_dssp SSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCCEEEEEcCCCccceEEEEEEeccCCceEEEEecCCCEE
Confidence 7889999999999999999999998888999999996665
No 5
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.22 E-value=0.00038 Score=54.81 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=41.8
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
.--||..|..+|. |+.||.|+|++.+.+ +...|.|+|+ -.|+-...+|+-|++
T Consensus 9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~ 61 (74)
T 2equ_A 9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCG
T ss_pred CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCCh
Confidence 4568999999999 999999999999876 7899999999 544444445555544
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=96.97 E-value=0.00065 Score=50.39 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=39.9
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
+|..|...|.+|+.||.|+|++.+...+...|.|.|-.-.|+=..-||+.+++
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 68899999999999999999999887788899998855443322234444443
No 7
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=96.90 E-value=0.00053 Score=59.04 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=37.8
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.++||.||..+|.+|..||-|+|+.+ ...+++.|.|||++..
T Consensus 4 ~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~ 45 (123)
T 2g3r_A 4 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 45 (123)
T ss_dssp -CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEE
T ss_pred ccccceEEEEEeccCCcCcccEEEEe-ccCCeEEEEEcCCCee
Confidence 67999999999998889999999984 7779999999999985
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=96.79 E-value=0.00085 Score=52.27 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=34.8
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.||.+|..+| .|+.||+|+|++.+.+ +.+.|.|++|+.+
T Consensus 8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~e 46 (67)
T 3p8d_A 8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 46 (67)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceE
Confidence 4899999999 9999999999999998 6799999995554
No 9
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.77 E-value=0.0015 Score=49.22 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=42.6
Q ss_pred CCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 225 ~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
...-+|..|...|.+|+.||.|+|++.+...+...|.|.+-.-. |.|.+++|
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~---e~V~~~~L 58 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNA---EVTPLLNL 58 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEE---EEEEGGGE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCE---EEEeHHHc
Confidence 35568999999999999999999999998878899999886555 34655554
No 10
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.64 E-value=0.00032 Score=56.47 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=32.6
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
+|.+|..+|. |+.||.|+|++.+.+ +...|.|++|+.+
T Consensus 9 vGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E 46 (81)
T 2ldm_A 9 INEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQ 46 (81)
Confidence 7899999999 999999999999854 5789999985443
No 11
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=96.61 E-value=0.0013 Score=53.51 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.2
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.=.||.+|..+| .|..||.|.|++.+.+ +.+.|.|++|+.+
T Consensus 21 ~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~e 61 (85)
T 3qii_A 21 EFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQ 61 (85)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEE
T ss_pred ccccCCEEEEEe-CCCCEeeEEEEEECCC-CeEEEEEeCCCeE
Confidence 446999999999 9999999999999987 6799999995554
No 12
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.53 E-value=0.002 Score=52.11 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=41.9
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
--||-.|...|.+|+.||.|+|+..+...+...|.|.+-.-.| -|.+.+|-|
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E---~V~~~~Lrp 62 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNRE---EQNLSDLLS 62 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEE---EEEGGGCBC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEE---EEcHHHccc
Confidence 4589999999999999999999999987788999998766664 354555443
No 13
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.43 E-value=0.0028 Score=45.95 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=36.5
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
+|-.+...|.+|+.||.|+|++.+...+...|.|.|-.-. |.|.+++|
T Consensus 4 ~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~---e~v~~~~l 51 (54)
T 3s6w_A 4 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNY---EEVLLSNI 51 (54)
T ss_dssp TTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCE---EEEEGGGE
T ss_pred CCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCe---EEEeHHHE
Confidence 6788999999999999999999998878888998775544 34544443
No 14
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.40 E-value=0.0023 Score=57.02 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=37.7
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
+++||.||..+|.+++-||.|+|+.+ ...+++.|.||||...
T Consensus 8 ~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k 49 (156)
T 1ssf_A 8 NSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYEC 49 (156)
T ss_dssp CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEE
T ss_pred cchhccEEEEEcCCCCcccccEEEEe-ccCCEEEEEEcCCCee
Confidence 66999999999999999999999996 5567799999999984
No 15
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.29 E-value=0.0027 Score=49.87 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=42.3
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (371)
--+|..|...|.+|+.||.|+|++.+...+...|.|.|-.-.|+=..-||+.|+++
T Consensus 18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 45889999999999999999999999877788899988655544334456666655
No 16
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.18 E-value=0.0036 Score=48.83 Aligned_cols=49 Identities=27% Similarity=0.519 Sum_probs=43.9
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
-||.-|..+| .|.-||+|+|+.-|..++.-.|.|.|+..- ||..++|.+
T Consensus 15 ~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~----w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFEDSSKS----WVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred cCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEccCCEE----EEEeecccc
Confidence 4888999999 999999999999999999999999999876 897777654
No 17
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.11 E-value=0.005 Score=48.25 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=44.0
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (371)
..-+|..|...|.+|+.||.|+|+..+...+...|.|-|-.-.|+=..-||+.|+++
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 446889999999999999999999998877888899877655544334456666654
No 18
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.55 E-value=0.054 Score=43.47 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=43.5
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
=.+|.-|-.+| .|.-||.|+|..-|...++..|.|+|++.- |+..++|.+
T Consensus 27 f~eGeDVLarw-sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~----W~~~kdi~~ 76 (79)
T 2m0o_A 27 LWEGQDVLARW-TDGLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 76 (79)
T ss_dssp CCTTCEEEBCC-TTSCCCEEEEEEEETTTTEEEEEETTSCEE----EEETTTBCC
T ss_pred eccCCEEEEEe-cCCCEEeEEEEEeccCCCEEEEEEcCCCeE----EEEeecccc
Confidence 34788899999 678999999999999999999999999876 998888765
No 19
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=94.64 E-value=0.028 Score=42.83 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=41.9
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
.+|..|..+|-| .-||-|+|...|...+...|.|+|++.- |+.+++|.+
T Consensus 5 ~~GedVLarwsD-G~fYlGtI~~V~~~~~~clV~F~D~s~~----W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECTT-SCEEEEEEEEEETTTTEEEEEETTSCEE----EEEGGGEEE
T ss_pred ccCCEEEEEecC-CCEEeEEEEEEecCCCEEEEEEcCCCeE----EEEhHHccc
Confidence 367789999966 9999999999999988999999999876 887776654
No 20
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.37 E-value=0.14 Score=41.36 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=51.0
Q ss_pred CccccceeeeccC---CCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCCCCccccccCCCC
Q 017436 226 NPLIGRKVWTRWP---EDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPEDIKWEGDEP 291 (371)
Q Consensus 226 ~sLVGrrVkv~WP---dDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spedi~W~~e~p 291 (371)
.-.||-+|.++++ .++.||+|.|.+.+...+ ++-|.|..-+..=- |||....|.-..++|...++
T Consensus 9 ~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlD-EWV~~~rl~~~~~~~p~~~~ 78 (87)
T 2eko_A 9 EIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLD-EWVTHERLDLKKIQFPKKEA 78 (87)
T ss_dssp SCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCC-EEECTTTBCGGGCCCCCCSC
T ss_pred cccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccc-cccCHhHcccccccCCCCCC
Confidence 3458999999997 589999999998887543 67789998877321 79999888777788875433
No 21
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=94.32 E-value=0.068 Score=42.00 Aligned_cols=47 Identities=15% Similarity=0.390 Sum_probs=35.6
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
.=.+|.-|-++|=| ..||.|+|++. .+.+-.|.|+|+++- ||.+++|
T Consensus 15 ~~~~geDVL~rw~D-G~fYLGtIVd~--~~~~ClV~FeD~S~~----Wv~~kdi 61 (69)
T 2xk0_A 15 TYALQEDVFIKCND-GRFYLGTIIDQ--TSDQYLIRFDDQSEQ----WCEPDKL 61 (69)
T ss_dssp CCCTTCEEEEECTT-SCEEEEEEEEE--CSSCEEEEETTCCEE----EECTTTE
T ss_pred ccccCCeEEEEecC-CCEEEEEEEec--CCceEEEEecCCcce----eeeHHHH
Confidence 33588999999965 99999999764 356667899998875 8854443
No 22
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.04 E-value=0.092 Score=40.57 Aligned_cols=51 Identities=24% Similarity=0.448 Sum_probs=42.6
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCcc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPED 283 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sped 283 (371)
.+|.-|..+| .|.-||-|+|+.-|.....-.|.|.|++.- ||..++|.+-.
T Consensus 9 ~eGqdVLarW-sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~~~ 59 (63)
T 2e5q_A 9 TEGQYVLCRW-TDGLYYLGKIKRVSSSKQSCLVTFEDNSKY----WVLWKDIQHAG 59 (63)
T ss_dssp CTTCEEEEEC-TTSCEEEEEECCCCSTTSEEEEEETTSCEE----EEEGGGEECCS
T ss_pred ecCCEEEEEe-cCCCEEEEEEEEEecCCCEEEEEEccCcee----EEEeecccccC
Confidence 4778888999 568999999999999888888899998876 99888876543
No 23
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=92.89 E-value=0.072 Score=42.05 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=37.5
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
..-+|..+-+.|++|+.||.|+|..... ++.-.|.|-|-.-.|+-..-||+.|.+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence 3458889999999999999999999975 355667665555443222224444443
No 24
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.47 E-value=0.14 Score=41.64 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=40.3
Q ss_pred cCCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 224 ~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.+..-+|.-|-+..+++|.||.|.|..-+.++.-|-+.||.|..+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~ 63 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVEL 63 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEE
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEE
Confidence 345568888999999999999999999999999999999999885
No 25
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.25 E-value=0.085 Score=42.86 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=38.3
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
...+|.-+-+.|.+|+.||.|+|+..+.+ +.-.|.|-|-.-.|+-.+-||+.+.+
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~-~~~~V~fvDyGn~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN-GNLDLYFVDFGDNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS-SCEEEEETTTCCEEEECGGGCEECCH
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEeCCCeEEEehHHhhcCcH
Confidence 34578889999999999999999999874 45567666655543323334555544
No 26
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.83 Score=37.50 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=45.5
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCCCCc-cccccC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~spe-di~W~~ 288 (371)
-||-+|.+++ ++.||+|.|.+-....+ ++-|.|..-+..=- |||+...|.-. +++|..
T Consensus 27 ~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlD-EWV~~~RI~l~~~v~~p~ 87 (94)
T 2rnz_A 27 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLD-EWITTDRINLDKEVLYPK 87 (94)
T ss_dssp CTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTC-EEEETTTBCSSSCCCCCC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccc-cccCHHHcccccCccCCC
Confidence 4899999997 88999999997776553 67789999888322 79998888655 488864
No 27
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.73 E-value=0.19 Score=39.36 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=41.0
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
.+|.-|..+|-| .-||.|+|+.-|.....-.|.|.|++.- ||..++|.+
T Consensus 11 ~eGqdVLarWsD-GlfYlGtV~kV~~~~~~ClV~FeD~s~~----wv~~kdi~~ 59 (68)
T 2e5p_A 11 WEGQDVLARWTD-GLLYLGTIKKVDSAREVCLVQFEDDSQF----LVLWKDISP 59 (68)
T ss_dssp CTTCEEEEECTT-SSEEEEEEEEEETTTTEEEEEETTTEEE----EEETTTEEC
T ss_pred ccCCEEEEEecC-CcEEEeEEEEEecCCcEEEEEEccCCee----eeeeecccc
Confidence 477888899966 9999999999999888888999998876 886666543
No 28
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=90.37 E-value=0.28 Score=42.20 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=35.1
Q ss_pred CccccceeeeccCCCC----CceeeeeeeccCCCCceeeeccCCCCCCcceeeecc
Q 017436 226 NPLIGRKVWTRWPEDN----HFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 277 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn----~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~ 277 (371)
+--+|.+|.++|-.++ +||.|+|+.... ..|.|.|+.-+..=+ |||.+.
T Consensus 60 ~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~~~~~~~-EiV~~~ 112 (128)
T 3h8z_A 60 EITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAACDATYN-EIVTLE 112 (128)
T ss_dssp CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETTC----C-EEECGG
T ss_pred CCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcCCCCCcc-eEEehh
Confidence 4459999999999888 899999999984 689999988665222 577433
No 29
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=89.93 E-value=1.5 Score=37.68 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=38.4
Q ss_pred cccceeeeccCCCCCceeeeeeeccC----CCCceeeeccCCCCCCcceeeeccCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNP----NEGRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~----~tg~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
-||-+|.++|+ |+.||+|.|.+-.. ..-.+.|.|..-+..=- |||....|
T Consensus 14 ~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~D-EWV~~~ri 67 (133)
T 1wgs_A 14 EIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLD-EWVDKNRL 67 (133)
T ss_dssp CTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCC-EEECTTTS
T ss_pred CCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCce-eecChhhc
Confidence 48999999998 77999999997553 23467799998777322 79976665
No 30
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=88.00 E-value=0.47 Score=38.63 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=44.8
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCC--CceeeeccCCCCCCcceeeeccCCCCc-cccccC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVNLKEISPE-DIKWEG 288 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~t--g~H~LvYD~g~~~EtwEwVdL~e~spe-di~W~~ 288 (371)
-||-+|.+++ ++.||+|.|.+-+... -.+-|.|..-+..=- |||....|.-. +++|..
T Consensus 25 ~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlD-EWV~~~rl~l~~~v~~p~ 85 (92)
T 2ro0_A 25 IIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLD-EWITTDRINLDKEVLYPK 85 (92)
T ss_dssp CTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSC-EEEEGGGEETTSCEEECC
T ss_pred cCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccc-cccCHhHcccccCccCCC
Confidence 4899999997 8899999999777655 367789998887311 79988888554 477763
No 31
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=87.21 E-value=0.45 Score=41.60 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=37.4
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
.-+|..|-..|.+|+.||.|+|++... +.-.|.|-|-.-.|+..+=+|+.+++
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPP 104 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCG
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCCh
Confidence 458889999999999999999999876 55667765544433333335555554
No 32
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=86.66 E-value=0.38 Score=41.72 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=37.4
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (371)
.-+|.-+-..|++|+.||.|.|+..+++. .-.|.|-|-.-.|++ =+|+.+.++
T Consensus 48 ~~~G~~c~A~~~~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v--~~lr~l~~~ 100 (169)
T 3ntk_A 48 LKEGALCVAQFPEDEVFYRAQIRKVLDDG-KCEVHFIDFGNNAVT--QQFRQLPEE 100 (169)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSTT-CEEEEETTTTEEEEE--SCEECCCHH
T ss_pred CCCCCEEEEEECCCCcEEEEEEEEECCCC-EEEEEEEecCCeEEh--hhhhccCHH
Confidence 34777888999999999999999998754 566766444443332 355666543
No 33
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=83.55 E-value=0.61 Score=36.55 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=38.9
Q ss_pred cccceeeeccCCC--CCceeeeeeeccCCCC--ceeeeccCCCCCCcceeeeccCC
Q 017436 228 LIGRKVWTRWPED--NHFYEAVITDYNPNEG--RHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 228 LVGrrVkv~WPdD--n~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
.||-+|.++|+++ ..||+|.|.+-+...+ ++.|-|..-+..=- |||....|
T Consensus 7 ~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~D-EWV~~~ri 61 (76)
T 2lcc_A 7 LTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYD-EWVKADRI 61 (76)
T ss_dssp STTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSC-EEEEGGGE
T ss_pred CCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCce-EecChhhc
Confidence 4899999999953 7999999998776554 57789998777322 78865444
No 34
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=83.23 E-value=3.5 Score=32.99 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=37.2
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeecc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLK 277 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~ 277 (371)
-||-||...-+. +.||+++|+.-+....+-.|.||.-+..-- |||+.+
T Consensus 21 ~vGmkLEA~D~~-~~~~~a~i~~v~~~~~~v~VHfdGW~~~yD-eWv~~d 68 (88)
T 2eqm_A 21 EIGARLEALDYL-QKWYPSRIEKIDYEEGKMLVHFERWSHRYD-EWIYWD 68 (88)
T ss_dssp CSSCEEEEECTT-SCEEEEEEEEEETTTTEEEEEESSSTTTEE-EEEETT
T ss_pred CCCCEEEEEcCC-CCeeEEEEEEEeccCCEEEEEECCCCCccc-EEeeCC
Confidence 489999887665 579999999888777888999998864311 688544
No 35
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=81.76 E-value=0.91 Score=42.28 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=34.3
Q ss_pred ccccceeeeccCCCC--Cceeeeeee--ccCCCCceeeeccCCCCC
Q 017436 227 PLIGRKVWTRWPEDN--HFYEAVITD--YNPNEGRHALVYDINTAD 268 (371)
Q Consensus 227 sLVGrrVkv~WPdDn--~fYegvIt~--Yn~~tg~H~LvYD~g~~~ 268 (371)
=.||-||-..|.+.+ .||.|+|.. +.-+.-++.|.||||.+.
T Consensus 69 l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~~ 114 (213)
T 3dlm_A 69 LYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYAS 114 (213)
T ss_dssp CCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCEE
T ss_pred EeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCcc
Confidence 359999999999875 899999993 323446999999999984
No 36
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=76.71 E-value=2.8 Score=34.79 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=35.3
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCC--ceeeeccCCCCCCcceeee
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEG--RHALVYDINTADETWEWVN 275 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg--~H~LvYD~g~~~EtwEwVd 275 (371)
-||-+|.++| ++.||+|.|.+-+...+ .+.|.|..-+..=- |||.
T Consensus 24 ~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~D-EWV~ 70 (102)
T 2f5k_A 24 QEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWD-EWVP 70 (102)
T ss_dssp CTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGC-EEEE
T ss_pred CCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCce-eecc
Confidence 4899999999 78999999998775443 78899998777321 7885
No 37
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=74.14 E-value=9.1 Score=31.36 Aligned_cols=55 Identities=13% Similarity=0.099 Sum_probs=38.5
Q ss_pred CcCCccccceeeeccCCCCCceeeeeeeccCCC-----CceeeeccCCCCCCcceeeeccCC
Q 017436 223 ATYNPLIGRKVWTRWPEDNHFYEAVITDYNPNE-----GRHALVYDINTADETWEWVNLKEI 279 (371)
Q Consensus 223 ~~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~t-----g~H~LvYD~g~~~EtwEwVdL~e~ 279 (371)
+.+.+-=|.+|.++|. ++.||+|.|.+-.... -++-|.|..-+..=- |||....|
T Consensus 11 i~i~~~~~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlD-EWV~~~RL 70 (92)
T 2bud_A 11 IDISENPDKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLD-GWVGRHRI 70 (92)
T ss_dssp CCSTTCTTSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTC-EEEETTTE
T ss_pred EEecCCCCCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccc-cccCHHHh
Confidence 3334444779999997 7899999999755443 367799998888422 68865544
No 38
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=73.34 E-value=3.6 Score=36.23 Aligned_cols=41 Identities=20% Similarity=0.429 Sum_probs=30.6
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeec-cCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTA 267 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvY-D~g~~ 267 (371)
..-+|.-+-+++++|+.||.|.|++..... .-.|.| |.|+.
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~-~~~V~~vDyG~~ 106 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPSG-NVKVHFVDYGNV 106 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTS-CEEEEETTTCCE
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCC-eEEEEEEccCCE
Confidence 345788899999999999999999987643 444544 55554
No 39
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=71.41 E-value=1.9 Score=36.77 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=36.1
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCcccc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDIK 285 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spedi~ 285 (371)
-||.+|...|. ++-||.|.|++-... --|.|.||||+-- +++-||||.
T Consensus 7 ~vGq~V~akh~-ngryy~~~V~~~~~~-~~y~V~F~DgS~s--------~dl~peDIv 54 (118)
T 2qqr_A 7 TAGQKVISKHK-NGRFYQCEVVRLTTE-TFYEVNFDDGSFS--------DNLYPEDIV 54 (118)
T ss_dssp CTTCEEEEECT-TSSEEEEEEEEEEEE-EEEEEEETTSCEE--------EEECGGGBC
T ss_pred ccCCEEEEECC-CCCEEeEEEEEEeeE-EEEEEEcCCCCcc--------CCCCHhhcc
Confidence 38889999998 789999999986433 4577899988753 246677663
No 40
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=70.74 E-value=2.7 Score=37.82 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=35.6
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCc
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPE 282 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spe 282 (371)
.-+|.-+-..|. |+.||.|+|++.+.. +.-.|.|-|-.-.|+-.+=+|+.|.++
T Consensus 66 ~~~G~~c~a~~~-d~~wyRa~V~~~~~~-~~~~V~~vDyGn~~~v~~~~lr~l~~~ 119 (246)
T 2hqx_A 66 PRRGEFCIAKFV-DGEWYRARVEKVESP-AKIHVFYIDYGNREVLPSTRLGTLSPA 119 (246)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEEET-TEEEEEETTTCCEEEECGGGEECCCGG
T ss_pred CCCCCEEEEEcC-CCCEEEEEEEEEcCC-CeEEEEEEeCCCeEEEeHHHhhcCCHh
Confidence 347788889998 899999999999764 355566655333322223356666543
No 41
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=69.44 E-value=3.5 Score=37.09 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=29.5
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeec-cCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVY-DINTA 267 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvY-D~g~~ 267 (371)
-+|.-+-+++.+|+.||.|.|++..+. +.-.|.| |.|+.
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~-~~~~V~~vDyGn~ 106 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPS-GNVKVHFVDYGNV 106 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSS-SEEEEECTTTCCE
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-CeEEEEEEecCCE
Confidence 467888899999999999999998764 3445544 44544
No 42
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=68.74 E-value=4.4 Score=33.81 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=26.5
Q ss_pred CCccccceeeeccCCCCCceeeeeeeccCCCCce
Q 017436 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRH 258 (371)
Q Consensus 225 ~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H 258 (371)
+..++|++|.|.- .++.-|.|++..||..-..+
T Consensus 7 L~~~~gk~V~V~L-k~g~~~~G~L~~~D~~MNlv 39 (119)
T 1b34_A 7 LMKLSHETVTIEL-KNGTQVHGTITGVDVSMNTH 39 (119)
T ss_dssp HHTCTTCEEEEEE-TTCCEEEEEEEEECTTCCEE
T ss_pred HHHhCCCEEEEEE-cCCCEEEEEEEEEcccceEE
Confidence 3568899998854 67899999999999876543
No 43
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=67.80 E-value=1.6 Score=37.36 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=36.3
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCCccc
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISPEDI 284 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spedi 284 (371)
-||.+|...|.+ +-||.|.|++-.. .--|.|.||||+-- +++-||||
T Consensus 8 ~vGq~V~ak~~n-gryy~~~V~~~~~-~~~y~V~F~DgS~s--------~dl~PedI 54 (123)
T 2xdp_A 8 SVGQTVITKHRN-TRYYSCRVMAVTS-QTFYEVMFDDGSFS--------RDTFPEDI 54 (123)
T ss_dssp CTTCCCCCCCCC-CCCCCCEEEEEEE-EEEEEEEETTSCEE--------EEECGGGB
T ss_pred ccCCEEEEECCC-CcEEeEEEEEEee-EEEEEEEcCCCCcc--------CCCCHhHc
Confidence 378888999985 9999999998775 34577899988753 24667777
No 44
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=59.58 E-value=14 Score=27.76 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=34.8
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeec
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNL 276 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL 276 (371)
-||-||.+.=+.+. ||.|+|+.-|...++-.|.||.-+..-- ||++.
T Consensus 14 ~vGmkLEa~d~~~p-~~~AtV~~v~~~~~~~~VhfdGw~~~~D-~W~~~ 60 (69)
T 3sd4_A 14 EVGAQLEARDRLKN-WYPAHIEDIDYEEGKVLIHFKRWNHRYD-EWFCW 60 (69)
T ss_dssp STTCEEEEECTTSC-EEEEEEEEEETTTTEEEEEETTSCGGGC-EEEET
T ss_pred CCCCEEEEEECCCC-ccccEEEEEeccCCEEEEEeCCCCCCCC-EEEcC
Confidence 37888888766655 5999999987777888899997654222 68853
No 45
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.26 E-value=9.7 Score=35.53 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=41.1
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCC---------CceeeeccCCCCCCcceee---eccCCCCcccccc
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNE---------GRHALVYDINTADETWEWV---NLKEISPEDIKWE 287 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~t---------g~H~LvYD~g~~~EtwEwV---dL~e~spedi~W~ 287 (371)
||-.|-.+|...++||||.|..+.... --++|.||+-..+.+- -+ +|+--+..-++|.
T Consensus 5 i~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~-~~~~~~irprar~~~~~~ 74 (226)
T 3ask_A 5 VNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVV-QMNSRDVRARARTIIKWQ 74 (226)
T ss_dssp TTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEE-EEEGGGEEECCCCBCCGG
T ss_pred cCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCce-ecccccccccccccCCcc
Confidence 788899999999999999999887743 3566899998776442 12 2222344466664
No 46
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=52.63 E-value=9.1 Score=39.01 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=37.4
Q ss_pred CccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCcceeeeccCCCC
Q 017436 226 NPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEWVNLKEISP 281 (371)
Q Consensus 226 ~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~sp 281 (371)
..-+|.-|-..|. |+.||.|+|++.+. .+.-.|.|-|-.-.|+-.+=+|+.|++
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSP 464 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCG
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHHCccCCH
Confidence 4568999999999 99999999999987 455666665554443322334555543
No 47
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=56.46 E-value=3.2 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=33.4
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCC--CceeeeccCCCCCCcceeee
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNE--GRHALVYDINTADETWEWVN 275 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~t--g~H~LvYD~g~~~EtwEwVd 275 (371)
-||-+|.++|. +.||+|.|.+-+... ..+.|.|..-+..=- |||.
T Consensus 14 ~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~D-EWV~ 60 (85)
T 2lrq_A 14 VDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGWSKNWD-EWVP 60 (85)
Confidence 48999999994 479999999877543 467789987766311 6774
No 48
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=50.13 E-value=6.1 Score=31.92 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=34.2
Q ss_pred cCCccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCCCccee
Q 017436 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTADETWEW 273 (371)
Q Consensus 224 ~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~EtwEw 273 (371)
-+.++|||+|++-- .|+..|.|++..|||.+-.=-|.- . ..+++|--
T Consensus 11 el~~li~KeV~V~l-~dg~~y~G~l~tvDp~s~sIvL~n-~-~~~~~~~~ 57 (86)
T 1y96_A 11 EWQDYIYKEVRVTA-SEKNEYKGWVLTTDPVSANIVLVN-F-LEDGSMSV 57 (86)
T ss_dssp HHHHTTTCEEEEEE-TTTEEEEEEEEEECTTTCCEEEEE-E-CTTSCEEE
T ss_pred HHHhhcCCEEEEEE-cCCCEEEEEEEEECCCceEEEEee-c-ccCCeEEE
Confidence 45789999999985 678999999999999876444432 1 44555533
No 49
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=44.84 E-value=17 Score=26.03 Aligned_cols=15 Identities=47% Similarity=0.895 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhCC
Q 017436 79 EKESLITELRKELRV 93 (371)
Q Consensus 79 eKE~LLTeLR~eL~I 93 (371)
|+|.+|.+||.||++
T Consensus 5 ere~~i~~LreeLR~ 19 (43)
T 2l2l_A 5 ERERMIKQLKEELRL 19 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999999984
No 50
>4e9k_A Hypothetical protein; PF14717 family protein, DUF4465, structural genomics, joint for structural genomics, JCSG; 2.31A {Bacteroides ovatus}
Probab=42.47 E-value=16 Score=34.60 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCCceeeeeeeccCCC-CceeeeccCCCCCCcceeeeccCCC
Q 017436 240 DNHFYEAVITDYNPNE-GRHALVYDINTADETWEWVNLKEIS 280 (371)
Q Consensus 240 Dn~fYegvIt~Yn~~t-g~H~LvYD~g~~~EtwEwVdL~e~s 280 (371)
+..||.=+|+-||... -+|-|.= ....-.+|+||||+.|.
T Consensus 167 ~gD~Fklti~Gyd~~g~Ve~yLAD-~~~iV~~W~~vDLSsLG 207 (241)
T 4e9k_A 167 SNDSFKLTIYNYDKTMHVDCYLAE-GTNLLDQWKWVDLTSLG 207 (241)
T ss_dssp TTCEEEEEEEETTSSCEEEEEEEE-TTEECCSCEEEECGGGC
T ss_pred CCCEEEEEEEEECCCCcEEEEEec-CCEEecceEEEcccccC
Confidence 5779999999999432 2344433 23445789999999985
No 51
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=41.34 E-value=20 Score=29.65 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=33.2
Q ss_pred cccceeeeccCC---CCCceeeeeeeccCCC-------CceeeeccCCCCCCcc-eee
Q 017436 228 LIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWV 274 (371)
Q Consensus 228 LVGrrVkv~WPd---Dn~fYegvIt~Yn~~t-------g~H~LvYD~g~~~Etw-EwV 274 (371)
-+|-+|..+++| ..-+|+|.|.+-...+ -.+.|.|..=+ .+| |||
T Consensus 21 ~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn--~rwDEWV 76 (101)
T 3m9q_A 21 HKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWR--PSYDRAV 76 (101)
T ss_dssp CTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSC--GGGCEEE
T ss_pred cCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCC--cCceeec
Confidence 388899999987 6889999999776532 26778886443 344 677
No 52
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=40.99 E-value=28 Score=31.39 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=33.4
Q ss_pred ccceeeeccCCCCCceeeeeeeccCC-CCceeeeccCCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPN-EGRHALVYDINTAD 268 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~-tg~H~LvYD~g~~~ 268 (371)
.|.+|...||+--.||.|+|..=-.. .+.+.|.||+.+.+
T Consensus 119 ~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~ 159 (180)
T 3mea_A 119 KEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYA 159 (180)
T ss_dssp TTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTST
T ss_pred CCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCcc
Confidence 79999999999999999999975433 26888999987643
No 53
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=36.56 E-value=1.5e+02 Score=24.95 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHH
Q 017436 61 AYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIRE 116 (371)
Q Consensus 61 AY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe 116 (371)
.....++.-+| -+.++-.-+.+|.++-..|+||.++-..++.++.......+.|-
T Consensus 97 ~l~~l~~vA~A-DG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~~~~~~~~r~ 151 (161)
T 2ou3_A 97 ILLSAIWVSAA-DGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYYEAALRQKRL 151 (161)
T ss_dssp HHHHHHHHHHT-TSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556 36799999999999999999999999999999988777666665
No 54
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=34.43 E-value=36 Score=33.49 Aligned_cols=38 Identities=32% Similarity=0.601 Sum_probs=32.7
Q ss_pred ccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC
Q 017436 229 IGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (371)
Q Consensus 229 VGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~ 267 (371)
.|.+|...||+--.||.|+|.. -+.++...|.|++.+.
T Consensus 460 ~~~~v~a~~p~tt~fy~a~v~~-~~~~~~~~~~f~~~~~ 497 (522)
T 3mp6_A 460 PGTKVLARYPETTTFYPAIVIG-TKRDGTCRLRFDGEEE 497 (522)
T ss_dssp TTCEEEEECTTCSEEEEEEEEE-ECTTSCEEEEETTC--
T ss_pred CCCEEEEECCCCcceEeEEEec-CCCCCeEEEEecCCCC
Confidence 8999999999999999999999 4666889999999754
No 55
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=33.11 E-value=79 Score=28.02 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHh
Q 017436 57 VEQDAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (371)
Q Consensus 57 LE~eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r 118 (371)
...+.+.++.+|+..+.. .....+.|.++=.+++++.++=.+++..+.+++....|++-.
T Consensus 113 ~~~~~~~al~~A~~~~g~--di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~ 172 (234)
T 3rpp_A 113 MLEKASRELWMRVWSRNE--DITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETT 172 (234)
T ss_dssp GHHHHHHHHHHHHHTSCC--CCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344667888899999754 445677899999999999988788888888887777777644
No 56
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=31.01 E-value=1.1e+02 Score=26.35 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHh
Q 017436 60 DAYSSVLRAFKAQSDAITWEKESLITELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (371)
Q Consensus 60 eAY~sVLrAF~AQS~~LSWeKE~LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r 118 (371)
+.+.++.+|+..+. ..+..+..|.++=.+++++.++=.+++..+++++....|++..
T Consensus 116 ~~~~alf~a~~~~~--~~i~~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~ 172 (226)
T 1r4w_A 116 KVSRELWMRIWSRD--EDITESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETT 172 (226)
T ss_dssp HHHHHHHHHHHTSC--CCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHH
Confidence 44466777777754 3455667788899999999877788888888887777777654
No 57
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=29.83 E-value=42 Score=28.19 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=33.7
Q ss_pred CccccceeeeccCC---CCCceeeeeeeccCCC-------CceeeeccCCCCCCcc-eee
Q 017436 226 NPLIGRKVWTRWPE---DNHFYEAVITDYNPNE-------GRHALVYDINTADETW-EWV 274 (371)
Q Consensus 226 ~sLVGrrVkv~WPd---Dn~fYegvIt~Yn~~t-------g~H~LvYD~g~~~Etw-EwV 274 (371)
.=.+|-+|.+++++ .+.||+|.|.+-...+ -.+.|.|..=+. +| |||
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~--~wDEWV 76 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR--SWDRWA 76 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG--GGCEEE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCc--chhhcc
Confidence 34589999999885 3689999999776532 258889965443 44 577
No 58
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=29.26 E-value=63 Score=24.62 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHH--HHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHh
Q 017436 48 NDMATQIHSVEQDAYSSVLRAFKAQSDAIT-WEKESLI--TELRKELRVSDEEHRELLSKVNADDIILRIREWR 118 (371)
Q Consensus 48 ~~~~~~Ih~LE~eAY~sVLrAF~AQS~~LS-WeKE~LL--TeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r 118 (371)
.++..=|+.|.++-|... |.+. .++ ++.-..| .+| ++|+|+.-.||.-+.+. |+.||+..
T Consensus 8 ~~V~~WL~~lgL~~Y~~~---F~~~--~~d~~~~l~~lt~~DL-~~lGI~~~GhrkkIl~a-----i~~l~~~~ 70 (81)
T 1ucv_A 8 LTVGDWLDSIRMGRYRDH---FAAG--GYSSLGMVLRMNAQDV-RALGITLMGHQKKILGS-----IQTMRAQL 70 (81)
T ss_dssp SBHHHHHHHTTCGGGHHH---HHHT--TCCBHHHHTTCCHHHH-HHHTCCCHHHHHHHHHH-----HHHHHHHH
T ss_pred chHHHHHHHCCCHHHHHH---HHHc--CCChHHHHHHcCHHHH-HhCCCCChhHHHHHHHH-----HHHHHHHH
Confidence 467788999999999554 5552 333 5543333 355 58999999999855433 45555543
No 59
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=27.68 E-value=60 Score=26.24 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=30.5
Q ss_pred CCccccceeeeccCCCCCceeeeeeeccCCCCceee
Q 017436 225 YNPLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHAL 260 (371)
Q Consensus 225 ~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~L 260 (371)
-+.+||..|-+-==+|-+-|+|.|+++|+.+..=.|
T Consensus 4 a~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL 39 (84)
T 2vc8_A 4 ATDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISL 39 (84)
T ss_dssp -CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEE
T ss_pred cccccCCEEEEEECCCceEEEEEEEEeccCCCeEEE
Confidence 378999999999999999999999999998754333
No 60
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=27.08 E-value=40 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=29.1
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~ 267 (371)
+.+|-.|+|.|+|-. -|.|+...++.. ..+.|.++|+..
T Consensus 65 P~~G~~V~V~W~DG~-~y~a~f~g~~~~-~~YtV~FeDgs~ 103 (123)
T 2xdp_A 65 PAEGEVVQVKWPDGK-LYGAKYFGSNIA-HMYQVEFEDGSQ 103 (123)
T ss_dssp CCTTCEEEEECTTSC-EEEEEEEEEEEE-EEEEEECTTSCE
T ss_pred CCCCCEEEEEcCCCC-EEeEEEeeeeeE-EEEEEEECCCCe
Confidence 356789999998754 788888876542 456788999875
No 61
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=25.39 E-value=13 Score=33.38 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=28.8
Q ss_pred ccCCCCceeeeccCCCCCCcceeeeccCCCCccccccCCCCCcc
Q 017436 251 YNPNEGRHALVYDINTADETWEWVNLKEISPEDIKWEGDEPGIS 294 (371)
Q Consensus 251 Yn~~tg~H~LvYD~g~~~EtwEwVdL~e~spedi~W~~e~p~i~ 294 (371)
||+.-+-+.+..+.-..++.|-||||..-++++++|..+.-++.
T Consensus 22 ~~~~g~~~~~~~~~~~~~~~~~Wi~l~~p~~~e~~~l~~~~~l~ 65 (264)
T 3nvo_A 22 LDGRGGVKPLEDNDVIDSQHPCWLHLNYTHPDSARWLASTPLLP 65 (264)
T ss_dssp ECSSSCEEECCTTCEECTTSCEEEEEETTSHHHHHHHHHCTTSC
T ss_pred EcCCCCcccCCHHhcccCCCCEEEEeCCCCHHHHHHHHhccCCC
Confidence 34444444443332222567889999999999999987666663
No 62
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=25.12 E-value=87 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.2
Q ss_pred eeeccCCCCCceeeeeeeccCCCCceeeeccCC
Q 017436 233 VWTRWPEDNHFYEAVITDYNPNEGRHALVYDIN 265 (371)
Q Consensus 233 Vkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g 265 (371)
|.|+= ++..||+|+|+++. +..-.|.|+..
T Consensus 8 VEV~~-~~G~~y~a~V~~v~--~d~~~V~f~n~ 37 (128)
T 3h8z_A 8 VEVRG-SNGAFYKGFVKDVH--EDSVTIFFENN 37 (128)
T ss_dssp EEEEC-TTSCEEEEEEEEEC--SSEEEEEETTC
T ss_pred EEEec-CCCCEEEEEEEEEe--CCcEEEEEccc
Confidence 44443 66899999999985 45577899754
No 63
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=30.78 E-value=15 Score=31.35 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=31.4
Q ss_pred cccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCCC
Q 017436 228 LIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTAD 268 (371)
Q Consensus 228 LVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~~ 268 (371)
.||..|.+.-|+ +.|-+|+|...--. ..+.|+|||||+.
T Consensus 58 ~vG~~ve~~~~~-~~~~~~~I~~i~D~-S~YtVVFdDGD~k 96 (118)
T 2lcd_A 58 RVGAIVETRTSD-GSFQEAIISKLTDA-SWYTVVFDDGDER 96 (118)
Confidence 388899999985 69999999865433 4577899999985
No 64
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.54 E-value=1.6e+02 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhchhHHHHHHHHHhhhc
Q 017436 83 LITELRKELRVSDEEHRELLSKVNADDIILRIREWRKAS 121 (371)
Q Consensus 83 LLTeLR~eL~IS~eEH~~~l~~v~~De~i~~iRe~r~~g 121 (371)
-|.+||+.+++|.++-.+.+. + ...+|..|..+.
T Consensus 75 ~l~~~R~~~glsq~~la~~~g-~----s~~~i~~~E~g~ 108 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFG-G----GVNAFSRYEKGN 108 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC-S----CTTHHHHHHHTS
T ss_pred HHHHHHHHcCCCHHHHHHHHC-C----CHHHHHHHHCCC
Confidence 488999999999998766653 2 134677776643
No 65
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.04 E-value=32 Score=21.97 Aligned_cols=14 Identities=43% Similarity=0.359 Sum_probs=11.7
Q ss_pred cchhHHHHHHHHHH
Q 017436 352 TETLIKEVCGQMKK 365 (371)
Q Consensus 352 t~slikeVervf~~ 365 (371)
..+-||+|.++|.+
T Consensus 10 gataikqvkklfkk 23 (26)
T 1ytr_A 10 GATAIKQVKKLFKK 23 (26)
T ss_dssp SSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHH
Confidence 45789999999976
No 66
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.24 E-value=60 Score=27.48 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=28.2
Q ss_pred ccccceeeeccCCCCCceeeeeeeccCCCCceeeeccCCCC
Q 017436 227 PLIGRKVWTRWPEDNHFYEAVITDYNPNEGRHALVYDINTA 267 (371)
Q Consensus 227 sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg~H~LvYD~g~~ 267 (371)
+..|-.|+|.|+|-. -|.|+...++.. ..+.|.++|+..
T Consensus 64 P~~G~~V~V~W~DG~-~y~a~f~g~~~~-~~Y~V~feDgs~ 102 (118)
T 2qqr_A 64 PAEGEVVQVRWTDGQ-VYGAKFVASHPI-QMYQVEFEDGSQ 102 (118)
T ss_dssp CCTTCEEEEECTTSC-EEEEEEEEEEEE-EEEEEEETTSCE
T ss_pred CCCCCEEEEEcCCCC-EeeeEEeceeEE-EEEEEEECCCCE
Confidence 356779999998864 778777765532 456688888875
No 67
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=20.91 E-value=1.5e+02 Score=22.92 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHH--HHHHHHHHHHHhccCCCChHHHHHH--HHHH-HHhCCChHHHHHHHHH
Q 017436 48 NDMATQIHSVEQ--DAYSSVLRAFKAQSDAITWEKESLI--TELR-KELRVSDEEHRELLSK 104 (371)
Q Consensus 48 ~~~~~~Ih~LE~--eAY~sVLrAF~AQS~~LSWeKE~LL--TeLR-~eL~IS~eEH~~~l~~ 104 (371)
.++..=|+.+.+ .-|. ..|.. ..|+.+.=-.| .+|+ ..|+|..--|+.-+.+
T Consensus 23 ~dV~~WL~~~gl~~~~Y~---~~F~~--~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~ 79 (91)
T 1v85_A 23 EEVVLWLEQLGPWASLYR---DRFLS--ERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILT 79 (91)
T ss_dssp HHHHHHHHHHCGGGHHHH---HHHHH--TTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHH---HHHHH--hCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHH
Confidence 477788888877 7775 66776 36777755555 4577 5799999999985543
No 68
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=20.43 E-value=8.1 Score=35.33 Aligned_cols=25 Identities=16% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCcceeeeccCCCCccccccCCCCC
Q 017436 268 DETWEWVNLKEISPEDIKWEGDEPG 292 (371)
Q Consensus 268 ~EtwEwVdL~e~spedi~W~~e~p~ 292 (371)
+.+|=||||..-+++|++|.++.=|
T Consensus 47 d~~~vWIdl~~Pt~eEl~~l~~~f~ 71 (280)
T 4egw_A 47 DYRLIWIDCYDPKDEELYKLSKKIG 71 (280)
T ss_dssp SSSCEEEEEESCCHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHC
Confidence 4578899999999999999654433
No 69
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=20.33 E-value=1.9e+02 Score=27.08 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=26.4
Q ss_pred cCCccccceeeeccCCCCCceeeeeeeccCCCC
Q 017436 224 TYNPLIGRKVWTRWPEDNHFYEAVITDYNPNEG 256 (371)
Q Consensus 224 ~~~sLVGrrVkv~WPdDn~fYegvIt~Yn~~tg 256 (371)
.+..+|+++|+|.- .|+--|.|++..||..-.
T Consensus 8 kL~klIdKrV~V~L-kdGRel~GtLkgFDq~MN 39 (231)
T 3pgw_B 8 KMLQHIDYRMRCIL-QDGRIFIGTFKAFDKHMN 39 (231)
T ss_pred HHHHhcCCeEEEEE-CCCcEEEEEEEEEccccc
Confidence 45679999999987 567889999999997554
No 70
>4fzm_A Bacteriocin; phosphatase, divalent cation binding, lipid II binding, anti protein; 2.83A {Pseudomonas syringae PV} PDB: 4fzn_A
Probab=20.00 E-value=2.8e+02 Score=26.75 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCc---ccccCCCcccchhhHHHHHHHHHHHHHH
Q 017436 14 DLPPSHHNRFQRGVRPTGNGRS---AVIGSASLPRMQNDMATQIHSVEQDAYS 63 (371)
Q Consensus 14 dlpp~~q~r~~r~~~~~gng~~---~~~~~~py~r~~~~~~~~Ih~LE~eAY~ 63 (371)
.|||+|-.-.+- ....||++. -+.+..+|+|.......+-.-||..||+
T Consensus 4 eLPpt~v~~yp~-~~~~g~~~~~g~~~~~g~~~p~~i~~~~~~~~~l~~~a~~ 55 (284)
T 4fzm_A 4 ELPPTYITPYPE-ISAGGNGTYRGQDLSSGQSFPRGMQNPVATVLLLQGDLYC 55 (284)
T ss_dssp CCCTTCCCSSCC-SSTTTTTTSSCCCCSCSCSSCTTSCCHHHHHHHHHHHHHT
T ss_pred ecCCeEeecCCC-cccCCCceeeeeecCCCCCccccccchhhhhheecccEEE
Confidence 489997532222 133455543 1345677899888888889999999994
Done!