BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017437
(371 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6JHU8|P3H1_CHICK Prolyl 3-hydroxylase 1 OS=Gallus gallus GN=LEPRE1 PE=1 SV=1
Length = 725
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 122 YTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKV 174
+++ S N H V VT G+R + LWF+ D H E ++ + K+L R+++V
Sbjct: 644 FSSGSENPHGVKAVTKGQRCAIALWFTLDPRHSERERVQADDLVKMLFRTEEV 696
>sp|Q9R1J8|P3H1_RAT Prolyl 3-hydroxylase 1 OS=Rattus norvegicus GN=Lepre1 PE=1 SV=1
Length = 728
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 122 YTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKV--PQLCL 179
+++ + N H V VT G+R + LWF+ D H E ++ + K+L ++V PQ
Sbjct: 643 FSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKMLFSPEEVDLPQE-Q 701
Query: 180 PLP 182
PLP
Sbjct: 702 PLP 704
>sp|Q3V1T4|P3H1_MOUSE Prolyl 3-hydroxylase 1 OS=Mus musculus GN=Lepre1 PE=2 SV=2
Length = 739
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 122 YTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKV--PQLCL 179
+++ + N H V VT G+R + LWF+ D H E ++ + K+L ++V PQ
Sbjct: 654 FSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSERDRVQADDLVKMLFSPEEVDLPQE-Q 712
Query: 180 PLP 182
PLP
Sbjct: 713 PLP 715
>sp|Q32P28|P3H1_HUMAN Prolyl 3-hydroxylase 1 OS=Homo sapiens GN=LEPRE1 PE=1 SV=2
Length = 736
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 122 YTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDE 155
+++ + N H V VT G+R + LWF+ D H E
Sbjct: 651 FSSGTENPHGVKAVTRGQRCAIALWFTLDPRHSE 684
>sp|A1A399|BGAL_BIFAA Beta-galactosidase BgaB OS=Bifidobacterium adolescentis (strain
ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) GN=bgaB
PE=1 SV=2
Length = 700
Score = 35.4 bits (80), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 18/175 (10%)
Query: 185 SNMYWFSPNQASPDELGCNICWARMDVLGYDIYYSQNTSSALDCSELLLEPLQL-ARGDN 243
SN ++F ++ DEL C+ LG Y ++++SA+ +PL R
Sbjct: 285 SNDHYFHEGESHLDELACSDALMDSLALGKPWYVMEHSTSAVQ-----WKPLNTRKRKGE 339
Query: 244 LFHQPFANILHALQVVQFFHWKASEFPTSKFETEASKVLHLSQSQK---------ENISN 294
A++ + FF W+AS F F + + V H + K ++
Sbjct: 340 TVRDSLAHVAMGADAINFFQWRASAFGAEAFHS--AMVPHAGEDTKLFRQVCELGASLHT 397
Query: 295 LKSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLLNS 349
L V+ +LA + + E E + S S + W D +R ++ L++
Sbjct: 398 LADAGVQGTELAHSDTAILFSAESEWATRSQTLPSMKLNHWHD-VRDWYRAFLDA 451
>sp|Q6JHU7|P3H2_CHICK Prolyl 3-hydroxylase 2 OS=Gallus gallus GN=LEPREL1 PE=2 SV=1
Length = 694
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 122 YTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKL-----ISILSQKLLHRSD 172
+++ N H V VT G+R + LWF+ D + E ++ I++L Q+ + RS+
Sbjct: 630 FSSGGENPHGVKAVTKGQRCAVALWFTLDPLYRELERIQADEVIAMLDQEHVGRSE 685
>sp|Q7V8P9|Y286_PROMM PKHD-type hydroxylase PMT_0286 OS=Prochlorococcus marinus (strain
MIT 9313) GN=PMT_0286 PE=3 SV=1
Length = 221
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 126 SRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISIL---SQKLLHRSDKVPQLCLPLP 182
S ++H+V+ VT GERL W S +ED ++ L ++ LL + P+L L
Sbjct: 151 STSLHAVETVTAGERLVCVGWIQSYISSNEDRTILFGLNAGARALLAEHGRSPELDLIFQ 210
Query: 183 ASSNM 187
A +N+
Sbjct: 211 AYTNL 215
>sp|A2CBC7|Y2049_PROM3 PKHD-type hydroxylase P9303_20491 OS=Prochlorococcus marinus
(strain MIT 9303) GN=P9303_20491 PE=3 SV=1
Length = 221
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 126 SRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISIL---SQKLLHRSDKVPQLCLPLP 182
S ++H+V+ VT GERL W S +ED ++ L ++ LL + P+L L
Sbjct: 151 STSLHAVETVTAGERLVCVGWIQSYISSNEDRTILFGLNAGARALLAEHGRSPELDLIFQ 210
Query: 183 ASSNM 187
A +N+
Sbjct: 211 AYTNL 215
>sp|B1XWG9|Y1570_LEPCP PKHD-type hydroxylase Lcho_1570 OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=Lcho_1570 PE=3 SV=1
Length = 231
Score = 32.0 bits (71), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 118 DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLH 169
D+ +Y S VH V+ VT G R+ W DE +L+ + Q L+H
Sbjct: 153 DLVLYPGTS--VHRVEPVTRGARVGCFFWIESMVRSDEQRRLLHEMDQHLMH 202
>sp|A5WFM3|Y1523_PSYWF PKHD-type hydroxylase PsycPRwf_1523 OS=Psychrobacter sp. (strain
PRwf-1) GN=PsycPRwf_1523 PE=3 SV=1
Length = 259
Score = 31.6 bits (70), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 118 DVAMYTADSRNVHSVDEVTHGERLTLTLWF--------SRDSSHDEDAKLISILSQKLLH 169
D +Y + S +H V+ VT G+RL + W R HD D I +L QKLL
Sbjct: 151 DAVLYPSTS--LHRVNTVTSGQRLAMVTWVQSLVRSDEQRQILHDLDVSHI-LLRQKLLA 207
Query: 170 RSDKV 174
SD+
Sbjct: 208 TSDQA 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,334,512
Number of Sequences: 539616
Number of extensions: 5376888
Number of successful extensions: 12527
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12517
Number of HSP's gapped (non-prelim): 19
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)