Query 017437
Match_columns 371
No_of_seqs 97 out of 99
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4459 Membrane-associated pr 99.9 1.1E-25 2.5E-30 225.4 -14.2 269 80-366 97-403 (471)
2 KOG4459 Membrane-associated pr 99.8 1.2E-22 2.5E-27 203.9 -3.9 139 8-161 252-446 (471)
3 smart00702 P4Hc Prolyl 4-hydro 99.0 4.4E-09 9.6E-14 90.3 10.2 136 12-148 3-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 98.4 1.2E-06 2.6E-11 82.0 8.2 144 13-164 3-193 (226)
5 PF13640 2OG-FeII_Oxy_3: 2OG-F 96.8 0.00088 1.9E-08 52.4 2.4 30 118-148 70-100 (100)
6 COG3128 PiuC Uncharacterized i 95.2 0.037 8E-07 52.7 5.6 29 118-148 152-180 (229)
7 PLN00052 prolyl 4-hydroxylase; 91.6 1.3 2.8E-05 43.8 9.5 35 118-152 214-255 (310)
8 KOG3710 EGL-Nine (EGLN) protei 90.3 0.3 6.5E-06 47.9 3.7 36 118-154 209-244 (280)
9 PF03171 2OG-FeII_Oxy: 2OG-Fe( 78.6 1.2 2.6E-05 34.8 1.5 23 125-147 74-96 (98)
10 PF09859 Oxygenase-NA: Oxygena 50.2 9.7 0.00021 35.7 1.7 33 108-147 138-170 (173)
11 TIGR01762 chlorin-enz chlorina 39.2 2E+02 0.0044 27.9 8.8 122 13-154 17-145 (288)
12 PRK15401 alpha-ketoglutarate-d 34.2 2.8E+02 0.0061 26.5 8.7 33 10-43 18-52 (213)
13 KOG1591 Prolyl 4-hydroxylase a 34.1 31 0.00067 34.2 2.5 24 9-32 95-119 (289)
14 PF05721 PhyH: Phytanoyl-CoA d 24.0 85 0.0019 26.1 3.1 22 13-34 7-28 (211)
15 cd08788 CARD_NOD2_2_CARD15 Cas 21.9 21 0.00044 30.0 -1.0 17 12-28 22-38 (81)
No 1
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=99.87 E-value=1.1e-25 Score=225.38 Aligned_cols=269 Identities=22% Similarity=0.129 Sum_probs=234.8
Q ss_pred CCCcceeeeeccccccCcCCccccccCCcccccccccc------------------------ceeeeccC--------CC
Q 017437 80 CEFELVIEFTGLISWARGASIGWHCDDNRPYLKQRHFT------------------------DVAMYTAD--------SR 127 (371)
Q Consensus 80 L~~~LyfSfTHLVcwCRsASh~VHaDN~~P~~~~RDYS------------------------RlVgFSSG--------~E 127 (371)
..+..++.+++...||++...++|.+.+.|+.++|+.. =+|+-+.| --
T Consensus 97 a~fg~~le~a~Cl~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyY 176 (471)
T KOG4459|consen 97 AIFGHLLERAACLRRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYY 176 (471)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHH
Confidence 44567888888888999999999999888888877744 33333333 33
Q ss_pred c---ccccccccccceeeEEEecccCCCchhHHHHHHHhhhhhcccCCCCCCccCCCCCCCCccccC-CC-CCCCCCCcc
Q 017437 128 N---VHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILSQKLLHRSDKVPQLCLPLPASSNMYWFS-PN-QASPDELGC 202 (371)
Q Consensus 128 N---pHGVkAVTkGqRCAlALWFTlDp~H~E~erll~~l~~~~~~~~~~~p~~~lp~pas~~myw~~-~~-~~s~~~~g~ 202 (371)
+ .|.+..+|.++|=....||.++.++ ...+.++++ ||..++++|.|.+|||++ |- +.+.+++||
T Consensus 177 q~~l~~s~d~l~DlE~~~~~~~Fir~v~~----y~~~d~~~~-------v~~ve~AL~e~~~~~~~Cr~lceg~~e~i~f 245 (471)
T KOG4459|consen 177 QTMLGVSEDELTDLERREHEQWFIRGVRL----YSGEDPRQC-------VPEVELALPESFNMYEECRALCEGSYENIGF 245 (471)
T ss_pred HhccCCCcccccccccchHHHHHHHHhhh----ccccCchhc-------chhHHHHHHHHHHHHHHHHhhcCCccccccc
Confidence 4 7889999999999999999999887 222222332 356789999999999999 44 389999999
Q ss_pred eeeeeeeeeeeeEEEeecCCCCccChhhhhccceeeccCCccchhhhHhHHHHHhhheeeecccCCCCCccccccccc-h
Q 017437 203 NICWARMDVLGYDIYYSQNTSSALDCSELLLEPLQLARGDNLFHQPFANILHALQVVQFFHWKASEFPTSKFETEASK-V 281 (371)
Q Consensus 203 di~~ar~~~lg~~~~~~~~~~~~~d~~ell~~p~~l~r~~~l~~~~f~nilhalqvvqfy~wkas~l~~~~~~~~~~~-v 281 (371)
|.+ +|++-++++|..-+.++..- .++.|++ ++...|+..+++.|+|+.| ++||+|||.|+ .|+..+..+.. +
T Consensus 246 ~~~-~~l~~~~~ai~d~~~e~~~C-~~~cl~~-L~p~~g~~~v~k~~as~y~---ylQFa~ykise-~tqA~~~~~syLl 318 (471)
T KOG4459|consen 246 DYN-EQLNDLYRAIADLYLEVLEC-KLNCLAK-LAPHTGGKTVLKFFASHYH---YLQFAYYKISE-VTQAAECAASYLL 318 (471)
T ss_pred hhh-hhcchHHHHHHHhcccHHHH-HHHHHhc-cCcCCCCCcHHHHHHHHHH---HHHHHHhhHHH-HHHhhccccceee
Confidence 999 99999999999999998888 8899999 9999999999999999999 99999999999 66667777666 9
Q ss_pred hccchhhHhhhhcccceeeccccchhhhccccccccccccccccchhhHHHhhHHHHHHHHHHHHHhccCcceeeceeee
Q 017437 282 LHLSQSQKENISNLKSVFVKNNQLAETVFRPVIINEKEQQSFSWANFSAAVTAWEDYIRKLHKQLLNSLPHWRTHQSIFS 361 (371)
Q Consensus 282 ~~~s~~q~e~i~~l~s~~l~d~~~~~~~f~~~~~~~~~~~~f~w~~~~~av~~we~y~~~l~k~l~~~lp~wr~~~~i~~ 361 (371)
..+|+++.+++...++++++|+++..+-|++.|+.+...+.-.-..+..+++-|+.|.++.-++|....|.|.|.++|.+
T Consensus 319 f~~sh~v~r~~l~y~q~~r~d~~l~a~~~~~d~ea~e~~~~~~~~~~~~~~a~~~~~dd~~~~el~~t~~d~~t~~a~~k 398 (471)
T KOG4459|consen 319 FDPSHSVMRQNLAYYQVHRLDHELHADNFGPDPEAEECWNEPPLYTELDYFALLYLNDDFEGGELLFTEPDAKTYTAISK 398 (471)
T ss_pred eCCcHHHHHHHHHHHHHHhccccchhhhcCcCchHHHHhccchHHHHHHhhccHhhcCccccccceecCCcccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 017437 362 CPLDE 366 (371)
Q Consensus 362 v~~~~ 366 (371)
+.++-
T Consensus 399 ~~~~r 403 (471)
T KOG4459|consen 399 PECGR 403 (471)
T ss_pred ccccc
Confidence 87753
No 2
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=99.83 E-value=1.2e-22 Score=203.87 Aligned_cols=139 Identities=19% Similarity=0.289 Sum_probs=112.3
Q ss_pred CCCceEEecCccCHHHHHHHHHHHhhhccCCCCCCCCCCcccceeecC--CCccccccccchhHHHHHHHhhccCCCcce
Q 017437 8 SERRRVIVRNILSKEECEELELIHKSCSTVGYRPNVFSTTLSHLIATN--SSHFIVPFVPIRERLKEKVEEFFGCEFELV 85 (371)
Q Consensus 8 ~~sqRVVlDGvlS~eEC~eL~~La~aaataGYRp~t~~~t~~~l~a~g--a~~~lvp~~~vsEkvR~~vEsYF~L~~~Ly 85 (371)
.+..|.|.|++++..+| ++.+|++- .||++.-++.+..++. -.++. ||+++| +.++||...++|+
T Consensus 252 ~~~~~ai~d~~~e~~~C-~~~cl~~L------~p~~g~~~v~k~~as~y~ylQFa--~ykise----~tqA~~~~~syLl 318 (471)
T KOG4459|consen 252 NDLYRAIADLYLEVLEC-KLNCLAKL------APHTGGKTVLKFFASHYHYLQFA--YYKISE----VTQAAECAASYLL 318 (471)
T ss_pred chHHHHHHHhcccHHHH-HHHHHhcc------CcCCCCCcHHHHHHHHHHHHHHH--HhhHHH----HHHhhccccceee
Confidence 56789999999999999 99999982 2555443333322221 01111 688998 8999999999999
Q ss_pred eeeeccccccCcC---------CccccccCCc------------ccccccccc---------------------------
Q 017437 86 IEFTGLISWARGA---------SIGWHCDDNR------------PYLKQRHFT--------------------------- 117 (371)
Q Consensus 86 fSfTHLVcwCRsA---------Sh~VHaDN~~------------P~~~~RDYS--------------------------- 117 (371)
|++||+| ||++ -|++|+||+. |.++.|||+
T Consensus 319 f~~sh~v--~r~~l~y~q~~r~d~~l~a~~~~~d~ea~e~~~~~~~~~~~~~~a~~~~~dd~~~~el~~t~~d~~t~~a~ 396 (471)
T KOG4459|consen 319 FDPSHSV--MRQNLAYYQVHRLDHELHADNFGPDPEAEECWNEPPLYTELDYFALLYLNDDFEGGELLFTEPDAKTYTAI 396 (471)
T ss_pred eCCcHHH--HHHHHHHHHHHhccccchhhhcCcCchHHHHhccchHHHHHHhhccHhhcCccccccceecCCcccchhhc
Confidence 9999999 8875 4899999974 345567777
Q ss_pred ------ceeeeccCCCcccccccccccceeeEEEecccCCCchhHHHHHH
Q 017437 118 ------DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLIS 161 (371)
Q Consensus 118 ------RlVgFSSG~ENpHGVkAVTkGqRCAlALWFTlDp~H~E~erll~ 161 (371)
|+++|++|.|||||||+||||.||++|||+|++|.|+|.+++++
T Consensus 397 ~k~~~~re~~~~~g~e~~~~~~~~~kg~e~~~~lw~~~~~~~re~~~~~~ 446 (471)
T KOG4459|consen 397 SKPECGRECAFSSGAENPHGVKAVTKGLECAVALWPTLAPLNRECESIVA 446 (471)
T ss_pred cccccccchhhhccccCccchhhhhhhhHHhhhcCcccChhhhcccchhH
Confidence 99999999999999999999999999999999999999997443
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.97 E-value=4.4e-09 Score=90.29 Aligned_cols=136 Identities=23% Similarity=0.310 Sum_probs=87.1
Q ss_pred eEEecCccCHHHHHHHHHHHhhhccC--CCCCCCCCCcccceeecCCCccccc--cccchhHHHHHHHhhccCCC--cce
Q 017437 12 RVIVRNILSKEECEELELIHKSCSTV--GYRPNVFSTTLSHLIATNSSHFIVP--FVPIRERLKEKVEEFFGCEF--ELV 85 (371)
Q Consensus 12 RVVlDGvlS~eEC~eL~~La~aaata--GYRp~t~~~t~~~l~a~ga~~~lvp--~~~vsEkvR~~vEsYF~L~~--~Ly 85 (371)
.+++++|||++||+.|+.+++..... .+.+...+..-......... .+.. .-++.+++++.+..++.+.. ...
T Consensus 3 i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 81 (178)
T smart00702 3 VVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGT-WLELLKGDLVIERIRQRLADFLGLLRGLPLS 81 (178)
T ss_pred EEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecce-ecCCCCCCHHHHHHHHHHHHHHCCCchhhcc
Confidence 57999999999999999999764431 11111111000011110000 0111 13677889999999998752 233
Q ss_pred eeeeccccccCcCCccccccCCcccc-cccccc--------------------------------ceeeeccCC-Ccccc
Q 017437 86 IEFTGLISWARGASIGWHCDDNRPYL-KQRHFT--------------------------------DVAMYTADS-RNVHS 131 (371)
Q Consensus 86 fSfTHLVcwCRsASh~VHaDN~~P~~-~~RDYS--------------------------------RlVgFSSG~-ENpHG 131 (371)
..-..+++...+.....|.|+..+.. ..|.+| ++|.|.++. ..+|+
T Consensus 82 ~~~~~~~~Y~~g~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~~~~~~~~H~ 161 (178)
T smart00702 82 AEDAQVARYGPGGHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGLGLMVCATVKPKKGDLLFFPSGRGRSLHG 161 (178)
T ss_pred CcceEEEEECCCCcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCCCCccceEEeCCCCcEEEEeCCCCCcccc
Confidence 44445554556667789999863211 123333 899999887 89999
Q ss_pred cccccccceeeEEEecc
Q 017437 132 VDEVTHGERLTLTLWFS 148 (371)
Q Consensus 132 VkAVTkGqRCAlALWFT 148 (371)
|.+|++|.|.++..||.
T Consensus 162 v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 162 VCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCcceeCCEEEEEEEEC
Confidence 99999999999999983
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=98.37 E-value=1.2e-06 Score=81.96 Aligned_cols=144 Identities=18% Similarity=0.299 Sum_probs=80.4
Q ss_pred EEecCccCHHHHHHHHHHHhhhccCCCC-CCCCCCcccceeecCCCccccccccchhHHHHHHHhhccCCCcceeeee--
Q 017437 13 VIVRNILSKEECEELELIHKSCSTVGYR-PNVFSTTLSHLIATNSSHFIVPFVPIRERLKEKVEEFFGCEFELVIEFT-- 89 (371)
Q Consensus 13 VVlDGvlS~eEC~eL~~La~aaataGYR-p~t~~~t~~~l~a~ga~~~lvp~~~vsEkvR~~vEsYF~L~~~LyfSfT-- 89 (371)
+++++|+|++||++++.+..++ ||. |+... ....-.+.+-.+ +..--++..++.+.|+.+.. ..|||+++.
T Consensus 3 ~~I~~vLs~eec~~~~~~le~~---~~~dg~~ta-G~~~~~vKnN~q-l~~d~~~a~~l~~~i~~~L~-~~~l~~sa~lp 76 (226)
T PRK05467 3 LHIPDVLSPEEVAQIRELLDAA---EWVDGRVTA-GAQAAQVKNNQQ-LPEDSPLARELGNLILDALT-RNPLFFSAALP 76 (226)
T ss_pred eeecccCCHHHHHHHHHHHHhc---CCccCCcCc-Cccchhcccccc-cCCCCHHHHHHHHHHHHHHh-cCchhhhhccc
Confidence 5789999999999999888654 333 11100 000000011001 01112234445555555543 225555442
Q ss_pred ------ccccccCcCCccccccCCcc-----ccc-ccccc--------------------------------ceeeeccC
Q 017437 90 ------GLISWARGASIGWHCDDNRP-----YLK-QRHFT--------------------------------DVAMYTAD 125 (371)
Q Consensus 90 ------HLVcwCRsASh~VHaDN~~P-----~~~-~RDYS--------------------------------RlVgFSSG 125 (371)
++.|...|..-+.|.||... .-+ .||+| +||.|.|.
T Consensus 77 ~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~~~Vkp~aG~~vlfps~ 156 (226)
T PRK05467 77 RKIHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGEHRVKLPAGDLVLYPST 156 (226)
T ss_pred cccccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCCCcEEEecCCCeEEEECCC
Confidence 12222335567799998621 111 23444 99999974
Q ss_pred CCcccccccccccceeeEEEecccCCCchhHHHHHHHhh
Q 017437 126 SRNVHSVDEVTHGERLTLTLWFSRDSSHDEDAKLISILS 164 (371)
Q Consensus 126 ~ENpHGVkAVTkGqRCAlALWFTlDp~H~E~erll~~l~ 164 (371)
.+|.|.+||+|.|.++..|+--=-+-.++-.+|=.|+
T Consensus 157 --~lH~v~pVt~G~R~~~~~Wi~S~v~~~~~R~~lf~ld 193 (226)
T PRK05467 157 --SLHRVTPVTRGVRVASFFWIQSLVRDDSQRELLFDLD 193 (226)
T ss_pred --CceeeeeccCccEEEEEecHHHHcCCHHHHHHHHhHH
Confidence 8999999999999999999864333333334444443
No 5
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=96.77 E-value=0.00088 Score=52.40 Aligned_cols=30 Identities=30% Similarity=0.753 Sum_probs=29.1
Q ss_pred ceeeeccCCCcccccccc-cccceeeEEEecc
Q 017437 118 DVAMYTADSRNVHSVDEV-THGERLTLTLWFS 148 (371)
Q Consensus 118 RlVgFSSG~ENpHGVkAV-TkGqRCAlALWFT 148 (371)
|+|.|.+ ...+|||++| ++|+|++|..||+
T Consensus 70 ~~v~F~~-~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 70 RLVIFPS-DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp EEEEEES-CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred EEEEEeC-CCCeecCcccCCCCCEEEEEEEEC
Confidence 9999999 8999999999 9999999999996
No 6
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=95.21 E-value=0.037 Score=52.70 Aligned_cols=29 Identities=34% Similarity=0.771 Sum_probs=25.8
Q ss_pred ceeeeccCCCcccccccccccceeeEEEecc
Q 017437 118 DVAMYTADSRNVHSVDEVTHGERLTLTLWFS 148 (371)
Q Consensus 118 RlVgFSSG~ENpHGVkAVTkGqRCAlALWFT 148 (371)
.+|.|-| +..|.|.+||+|+|.|.-.|.-
T Consensus 152 dLVlypS--tSlH~VtPVTRg~R~asffW~q 180 (229)
T COG3128 152 DLVLYPS--TSLHEVTPVTRGERFASFFWIQ 180 (229)
T ss_pred CEEEccc--ccceeccccccCceEEEeeehH
Confidence 7888885 5699999999999999999974
No 7
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=91.62 E-value=1.3 Score=43.82 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=28.0
Q ss_pred ceeeecc-------CCCcccccccccccceeeEEEecccCCC
Q 017437 118 DVAMYTA-------DSRNVHSVDEVTHGERLTLTLWFSRDSS 152 (371)
Q Consensus 118 RlVgFSS-------G~ENpHGVkAVTkGqRCAlALWFTlDp~ 152 (371)
++|-|-+ +....|+.-+|++|.+-++..|+-..+-
T Consensus 214 ~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~ 255 (310)
T PLN00052 214 DAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSY 255 (310)
T ss_pred eEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeecccc
Confidence 6666654 3466899999999999999999987554
No 8
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=90.26 E-value=0.3 Score=47.90 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=31.4
Q ss_pred ceeeeccCCCcccccccccccceeeEEEecccCCCch
Q 017437 118 DVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHD 154 (371)
Q Consensus 118 RlVgFSSG~ENpHGVkAVTkGqRCAlALWFTlDp~H~ 154 (371)
||+-|=|+.+|||.|+++-.+ |-||++|+-.-.+-.
T Consensus 209 rLlffwSdrrnPhev~Pa~~t-ryaitvwyfda~era 244 (280)
T KOG3710|consen 209 RLLFFWSDRRNPHEVQPAYAT-RYAITVWYFDAKERA 244 (280)
T ss_pred eEEEEEecCCCcccccccccc-ceEEEEEEeccccch
Confidence 999999999999999999886 789999997655444
No 9
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=78.57 E-value=1.2 Score=34.77 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=15.0
Q ss_pred CCCcccccccccccceeeEEEec
Q 017437 125 DSRNVHSVDEVTHGERLTLTLWF 147 (371)
Q Consensus 125 G~ENpHGVkAVTkGqRCAlALWF 147 (371)
-...+|+|.++++|.|++++.|+
T Consensus 74 ~~~~~HrV~~~~~~~R~s~~~f~ 96 (98)
T PF03171_consen 74 YPATLHRVVPPTEGERYSLTFFL 96 (98)
T ss_dssp S----EEEE--STS-EEEEEEEE
T ss_pred cCCceeeeEcCCCCCEEEEEEEE
Confidence 45679999999999999999997
No 10
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=50.20 E-value=9.7 Score=35.72 Aligned_cols=33 Identities=45% Similarity=0.613 Sum_probs=24.6
Q ss_pred ccccccccccceeeeccCCCcccccccccccceeeEEEec
Q 017437 108 RPYLKQRHFTDVAMYTADSRNVHSVDEVTHGERLTLTLWF 147 (371)
Q Consensus 108 ~P~~~~RDYSRlVgFSSG~ENpHGVkAVTkGqRCAlALWF 147 (371)
+|.-.-|.|.|+-. =|||..|..|+|.+|.|=|
T Consensus 138 RPv~G~rG~yRv~~-------RHgVS~vrsG~R~tLgliF 170 (173)
T PF09859_consen 138 RPVRGARGYYRVNM-------RHGVSRVRSGERHTLGLIF 170 (173)
T ss_pred CCcCCCccceeccc-------ccccccccccceEEEEEEe
Confidence 45555556655422 4999999999999999977
No 11
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=39.15 E-value=2e+02 Score=27.89 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=63.6
Q ss_pred EEecCccCHHHHHHHHHHHhhhccCCCCCCCCCCc-ccceeecCCCccccc-c--ccchhHHHHHHHhhccCCCcceeee
Q 017437 13 VIVRNILSKEECEELELIHKSCSTVGYRPNVFSTT-LSHLIATNSSHFIVP-F--VPIRERLKEKVEEFFGCEFELVIEF 88 (371)
Q Consensus 13 VVlDGvlS~eEC~eL~~La~aaataGYRp~t~~~t-~~~l~a~ga~~~lvp-~--~~vsEkvR~~vEsYF~L~~~LyfSf 88 (371)
|++.+++|+||..+|..-...... .++..+... .......-..+...+ | +-..+++..+++..++- +.++..
T Consensus 17 v~~~~~~s~eei~~L~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~llG~--~v~l~~ 92 (288)
T TIGR01762 17 IGPFTLYSPEEMKETWKRIRLRLL--DRSAAPYQDLGGTNIANYDRHLDDDFLASHICRPEICHRVESILGP--NVLCWR 92 (288)
T ss_pred EeCcCCCCHHHHHHHHHHHHHHhh--ccccccccCCCCceeEeeeecccCHHHHHHhcCHHHHHHHHHHhCC--cEEeee
Confidence 789999999999998764421111 111000000 000000000111111 1 34568888999998864 467778
Q ss_pred eccccccCcC---CccccccCCccccccccccceeeeccCCCcccccccccccceeeEEEecccCCCch
Q 017437 89 TGLISWARGA---SIGWHCDDNRPYLKQRHFTDVAMYTADSRNVHSVDEVTHGERLTLTLWFSRDSSHD 154 (371)
Q Consensus 89 THLVcwCRsA---Sh~VHaDN~~P~~~~RDYSRlVgFSSG~ENpHGVkAVTkGqRCAlALWFTlDp~H~ 154 (371)
++++ ++-+ ..+||.|.. |+.. .|.-+. |..-..+..-+|+.|.-||+.-.
T Consensus 93 ~~~~--~K~pg~~~~~wHQD~~--y~~~----------~~~~~~--~~p~~~~~~~~vt~wiaLdd~t~ 145 (288)
T TIGR01762 93 TEFF--PKYPGDEGTDWHQADT--FANA----------SGKPQL--VWPENEEFGGTITVWTAFTDATI 145 (288)
T ss_pred ceee--eeCCCCCCCCCCccCc--cccc----------CCcccc--cccccCCCCCeEEEEEEcccCCc
Confidence 8988 5532 368999943 3321 011111 22222333457788888887654
No 12
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=34.20 E-value=2.8e+02 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=19.2
Q ss_pred CceEEecCccCHHHHHHHHH-HHhhhccCCCC-CCC
Q 017437 10 RRRVIVRNILSKEECEELEL-IHKSCSTVGYR-PNV 43 (371)
Q Consensus 10 sqRVVlDGvlS~eEC~eL~~-La~aaataGYR-p~t 43 (371)
..-|++.|+. .++.++|.. |...++.+.+| +.+
T Consensus 18 ~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~ 52 (213)
T PRK15401 18 PGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVT 52 (213)
T ss_pred CCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceec
Confidence 3467899996 677776654 33333345444 443
No 13
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=34.11 E-value=31 Score=34.19 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.2
Q ss_pred CCceE-EecCccCHHHHHHHHHHHh
Q 017437 9 ERRRV-IVRNILSKEECEELELIHK 32 (371)
Q Consensus 9 ~sqRV-VlDGvlS~eEC~eL~~La~ 32 (371)
-.+|+ +.-+|||++||+.|+.||+
T Consensus 95 w~P~~~~yhd~ls~~e~d~l~~lak 119 (289)
T KOG1591|consen 95 WDPRVVLYHDFLSDEECDHLISLAK 119 (289)
T ss_pred cCCceEeehhcCCHHHHHHHHHhhh
Confidence 34554 6799999999999999997
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=24.00 E-value=85 Score=26.09 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=18.6
Q ss_pred EEecCccCHHHHHHHHHHHhhh
Q 017437 13 VIVRNILSKEECEELELIHKSC 34 (371)
Q Consensus 13 VVlDGvlS~eEC~eL~~La~aa 34 (371)
||+.|+++++||++|.......
T Consensus 7 vvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 7 VVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp EEETTSS-HHHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHHH
Confidence 6899999999999998887765
No 15
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.90 E-value=21 Score=30.05 Aligned_cols=17 Identities=24% Similarity=0.663 Sum_probs=14.2
Q ss_pred eEEecCccCHHHHHHHH
Q 017437 12 RVIVRNILSKEECEELE 28 (371)
Q Consensus 12 RVVlDGvlS~eEC~eL~ 28 (371)
|.+-+|++|.+||.+..
T Consensus 22 ~ll~~G~is~~Ecd~Ir 38 (81)
T cd08788 22 LLLTRGFFSSYDCDEIR 38 (81)
T ss_pred HHHHcCCccHhhcchhh
Confidence 45678999999999874
Done!