RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017438
(371 letters)
>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 364
Score = 618 bits (1596), Expect = 0.0
Identities = 297/368 (80%), Positives = 321/368 (87%), Gaps = 4/368 (1%)
Query: 4 SRSMIFADCSSSTTARLVPFGRSRLLCGGGALCARRRLHVGVGPSLPASLRTTLTVHSSP 63
S++F DCSSSTT+RL+ F R G L RR VG + ++SS
Sbjct: 1 MASLMFTDCSSSTTSRLIHFNRISTPFNGTFLL--RRC-VGPLRVRTTASGRGCCINSSS 57
Query: 64 SPSLPVMNATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKD 123
SPS PV+NA SE AKVIDGKAVAK+IRDEIT EVSRMK++IGVVPGLAVILVGDRKD
Sbjct: 58 SPS-PVINADTGSEGGAKVIDGKAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGDRKD 116
Query: 124 SATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHID 183
SATYVRNKKKAC SVGINSFEV LPED++EQEVLK IS FN+DPSVHGILVQLPLP H+D
Sbjct: 117 SATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMD 176
Query: 184 EQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVV 243
EQ+ILNAVS+EKDVDGFHPLNIGRLAMRGREPLF+PCTPKGCIELLHRY +IKGKRAVV
Sbjct: 177 EQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVV 236
Query: 244 IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPG 303
IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITR+ADIIISAVGQPNMVRGSWIKPG
Sbjct: 237 IGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPG 296
Query: 304 AVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTS 363
AV+IDVGINPVEDA SPRGYRLVGDVCYEEAC+VASA+TPVPGGVGPMTIAMLLSNTLTS
Sbjct: 297 AVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTS 356
Query: 364 AKRVHNFQ 371
AKR+HNFQ
Sbjct: 357 AKRIHNFQ 364
>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase,
putative.
Length = 345
Score = 457 bits (1178), Expect = e-162
Identities = 200/312 (64%), Positives = 238/312 (76%), Gaps = 5/312 (1%)
Query: 58 TVHSSPSPSLPVMNATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVIL 117
+S P P + E VIDG +A++IR +I EV +MK A+G VPGLAV+L
Sbjct: 39 IPYSDPPPPVSFET-----EQKTVVIDGNVIAEEIRTKIASEVRKMKKAVGKVPGLAVVL 93
Query: 118 VGDRKDSATYVRNKKKACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLP 177
VG ++DS TYVRNK KAC+ GI S LPED +E ++L + FN+D S+HGILVQLP
Sbjct: 94 VGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLP 153
Query: 178 LPCHIDEQSILNAVSMEKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIK 237
LP H+DE ILN V +EKDVDGFHPLN+G LAMRGREPLF+ CTPKGC+ELL R G +I
Sbjct: 154 LPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIA 213
Query: 238 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRG 297
GK AVVIGRSNIVG+P +LLLQR DATVS VH+ TK+PE+ITR+ADI+I+A G PN+VRG
Sbjct: 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKADIVIAAAGIPNLVRG 273
Query: 298 SWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLL 357
SW+KPGAV+IDVG PVED+ GYRLVGDVCYEEA VASAITPVPGGVGPMTI MLL
Sbjct: 274 SWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLL 333
Query: 358 SNTLTSAKRVHN 369
NTL +AKR+
Sbjct: 334 CNTLDAAKRIFL 345
>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase
(NADP+).
Length = 299
Score = 430 bits (1106), Expect = e-152
Identities = 187/292 (64%), Positives = 230/292 (78%)
Query: 76 SEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKAC 135
S+ A++IDGKA+AK IR EI EV+++ + G VPGLAV++VG RKDS TYV K+KAC
Sbjct: 5 SDHVAQIIDGKAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKAC 64
Query: 136 QSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEK 195
VGI SF+V LPE+ SE E++ + N +P VHGILVQLPLP HI+E+ ILN +S+EK
Sbjct: 65 AEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEK 124
Query: 196 DVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA 255
DVDGFHPLNIG+LAM+GREPLF+PCTPKGC+ELL R G IKGK+AVV+GRSNIVG+P +
Sbjct: 125 DVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVS 184
Query: 256 LLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 315
LLL + DATV++VHSRT +PE I R+ADI+I+A GQ M++G WIKPGA +IDVG N V
Sbjct: 185 LLLLKADATVTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVS 244
Query: 316 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 367
D GYRLVGDV + E +VA ITPVPGGVGPMT+AMLL NT+ AKRV
Sbjct: 245 DPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRV 296
>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate
dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
[Coenzyme metabolism].
Length = 283
Score = 418 bits (1077), Expect = e-148
Identities = 162/289 (56%), Positives = 205/289 (70%), Gaps = 8/289 (2%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
+IDGKA+A++IR+E+ +V +K G PGLAVILVGD S YVR+KKKA + +GI
Sbjct: 1 MIIDGKALAEKIREELKEKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGI 60
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 200
S LPED +E+E+L I N DP V GILVQLPLP H+DEQ +L A+ EKDVDGF
Sbjct: 61 ASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGF 120
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 260
HP N+G+LA EP F+PCTP G + LL YG D++GK VV+GRSNIVG P ALLL
Sbjct: 121 HPYNLGKLA--QGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLN 178
Query: 261 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 320
+ATV++ HSRTK+ IT+ ADI++ AVG+P+ ++ +KPGAV+IDVGIN V D
Sbjct: 179 ANATVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND---- 234
Query: 321 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
+LVGDV ++ E ASAITPVPGGVGPMT+AMLL NTL +A+R
Sbjct: 235 --GKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQRG 281
>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 397 bits (1023), Expect = e-139
Identities = 155/290 (53%), Positives = 202/290 (69%), Gaps = 9/290 (3%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
A +IDGK VAK+ R+++ EV ++K+ G+VPGLAVILVGD S +YVR KKKA + V
Sbjct: 2 MAVIIDGKEVAKEKREQLKEEVVKLKEQ-GIVPGLAVILVGDDPASHSYVRGKKKAAEKV 60
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
GI S P D +E+E+L I N DP ++GILVQLPLP HIDE++++ +S EKDVD
Sbjct: 61 GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVD 120
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
GFHP+N+GR+ + + F+PCTP G +ELL Y DI GK VV+GRSNIVG P LL
Sbjct: 121 GFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLL 178
Query: 259 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 318
E+ATV+ HS+TKN E+T+QADI+I AVG+P ++ +K GAV+IDVG+N +E+ K
Sbjct: 179 LNENATVTYCHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLENGK 238
Query: 319 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 368
L GDV ++ E AS ITPVPGGVGPMTI ML+ NT+ AKR
Sbjct: 239 ------LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHNTVELAKRAG 282
>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 296
Score = 395 bits (1018), Expect = e-138
Identities = 161/291 (55%), Positives = 204/291 (70%), Gaps = 3/291 (1%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
A +IDGKA A +R + EV+R+K A GV PGLAV+LVG+ S YVR+K K + G
Sbjct: 2 ATIIDGKAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAG 61
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
+ SFE LP DTS+ E+L I+ N DP++HGILVQLPLP H+D ++++ A+ EKDVDG
Sbjct: 62 MASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDG 121
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
H +N GRLA E +PCTP GC+ LL R D+ G AVVIGRSN+VG P A LL
Sbjct: 122 LHVVNAGRLA--TGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLL 179
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
+ATV+I HSRT++ + R+ADI+++AVG+P MV+G WIKPGA +IDVGIN + +
Sbjct: 180 AANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEK 239
Query: 320 PRG-YRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
G RLVGDV + EA EVA AITPVPGGVGPMTIA LL+NTLT+A R
Sbjct: 240 GEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTAACRAAG 290
>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 373 bits (961), Expect = e-130
Identities = 153/292 (52%), Positives = 190/292 (65%), Gaps = 8/292 (2%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
+AK+IDGK +A+Q+R E+ +V A PGLAV+LVG S YV +K+KAC+ V
Sbjct: 2 TAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEV 61
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
G S LPE TSE E+L I N DP++ GILVQLPLP HID +L + +KDVD
Sbjct: 62 GFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVD 121
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
GFHP N+GRLA R PL PCTP+G + LL RYG D G AVV+G SNIVG P +L L
Sbjct: 122 GFHPYNVGRLAQ--RIPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLEL 179
Query: 259 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 318
TV++ H TKN R AD+++ AVG+P + G WIKPGA++IDVGIN +ED K
Sbjct: 180 LLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLEDGK 239
Query: 319 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNF 370
LVGDV +E A E AS ITPVPGGVGPMT+A LL NTL + + H+
Sbjct: 240 ------LVGDVEFETAAERASWITPVPGGVGPMTVATLLENTLQACEEYHDP 285
>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 357 bits (918), Expect = e-123
Identities = 149/291 (51%), Positives = 192/291 (65%), Gaps = 9/291 (3%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
+A++IDG A++KQ+R E + + A G PGLAVILVGD S YVRNK KAC+
Sbjct: 2 TAQLIDGNALSKQLRAEAAQRAAALT-ARGHQPGLAVILVGDNPASQVYVRNKVKACEDN 60
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
G +S + P D SE E+L I N DP +HGILVQLPLP HID ++ A++ EKDVD
Sbjct: 61 GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVD 120
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
GFH N G L M G +PLF PCTP G +++L G ++G AVVIGRSNIVG P A+LL
Sbjct: 121 GFHVANAGAL-MTG-QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLL 178
Query: 259 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 318
+ ATV+I HS+T++ TRQADI+++AVG+ N++ +KPGA +IDVG+N + K
Sbjct: 179 LQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDAGK 238
Query: 319 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
L GDV + EVA ITPVPGGVGPMTI MLL NT+ +A+R
Sbjct: 239 ------LCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAERAAA 283
>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 357 bits (919), Expect = e-123
Identities = 149/290 (51%), Positives = 196/290 (67%), Gaps = 4/290 (1%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
A ++DGKA+A +I + ++ G PGLAV+ VGD SA YVRNK+KAC VG
Sbjct: 2 ALILDGKALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVG 61
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
I SF HLP DTS+ EV I+ N D V GIL+QLPLP H+DE +L+A+ +KD DG
Sbjct: 62 IASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADG 121
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
HPLN+GRL ++G EP CTP G + LL DI GK+AVV+GRS +VG P AL+L
Sbjct: 122 LHPLNLGRL-VKG-EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLL 179
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
+ATV+I HSRT++ ITR+ADI+++A G+PN++ +KPGAV++DVGI+ + S
Sbjct: 180 AANATVTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPS--S 237
Query: 320 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
RL GDV +EE VA+AITPVPGGVGPMT+ MLL NT+ S ++ H
Sbjct: 238 DGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQKRHG 287
>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 295
Score = 351 bits (903), Expect = e-121
Identities = 158/292 (54%), Positives = 200/292 (68%), Gaps = 4/292 (1%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
+IDGK V+ +++E+ V + G VPGL VI+VG+ S YVRNK K+C+ +G+N
Sbjct: 3 IIDGKKVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMN 62
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S + LP DT+E+ +LK I N+DP VHGILVQ PLP IDE ++ A+ KDVDGFH
Sbjct: 63 STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFH 122
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLLQR 260
P N+GRL M + F+ CTP G +ELL RY + KGK VV+GRSNIVG P A L+LQ+
Sbjct: 123 PENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQK 182
Query: 261 EDA---TVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 317
TV+I HS TK+ TRQADI+I+A+G+ + +KPGAV+IDVGIN +ED
Sbjct: 183 LKESNCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDP 242
Query: 318 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
+ GYRLVGDV YE ASAITPVPGGVGPMTIAMLL NTL S +RV+N
Sbjct: 243 STKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNTLQSFERVNN 294
>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 347 bits (893), Expect = e-120
Identities = 148/287 (51%), Positives = 204/287 (71%), Gaps = 8/287 (2%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
++IDGKA+A++++ E+ +V+++K+ G+VPGL VILVGD S YVRNK+++ + G
Sbjct: 2 TEIIDGKALAQKMQAELAEKVAKLKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAG 61
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
S V LPE S++E+L I +N DP+ HGILVQLPLP HI+E+ IL A+ +KDVDG
Sbjct: 62 FKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDG 121
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
FHP+N G L GR P+ IPCTP G +E+ Y +++GK AVVIGRSNIVG P A LL
Sbjct: 122 FHPMNTGHL-WSGR-PVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
++ATV++ HSRT+N E+ R+ADI++ A+G+ + V ++K GAV+IDVG+N E+ K
Sbjct: 180 DKNATVTLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENGK- 238
Query: 320 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
L+GDV ++E EVAS ITPVPGGVGPMTI ML+ T +A R
Sbjct: 239 -----LIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQTYQAALR 280
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 337 bits (867), Expect = e-116
Identities = 135/285 (47%), Positives = 182/285 (63%), Gaps = 8/285 (2%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
++DGKA++ +I ++ ++ + G P LAVILVG S TYV K KAC+ VG+
Sbjct: 2 VLLDGKALSYKIEKDLKNKIQILTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGM 61
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 200
+S L E+T+E E+L I N D ++ GILVQLPLP HID + +L A+ KDVDGF
Sbjct: 62 DSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGF 121
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 260
HPLNIG+L + F+P TP G + LL Y +IKGK V+IG SNIVG P A+L+
Sbjct: 122 HPLNIGKLCS-QLDG-FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN 179
Query: 261 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 320
A+VS+ H TK+ T+ ADI+ VG+P++++ S +K GAV++D+GIN + D
Sbjct: 180 AGASVSVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG--- 236
Query: 321 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
RLVGDV +E AS ITPVPGGVGPMTI LL NTL +A+
Sbjct: 237 ---RLVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIAAE 278
>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 317 bits (815), Expect = e-108
Identities = 145/289 (50%), Positives = 193/289 (66%), Gaps = 8/289 (2%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
++IDG AVA QIRD++T + ++DA GV PGLA +L+ D S TYV K++ C+ VG
Sbjct: 2 TEIIDGNAVAAQIRDDLTDAIETLEDA-GVTPGLATVLMSDDPASETYVSMKQRDCEEVG 60
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
I + +V + D +E+ I N D VHGILVQ+P+P H+D++ +L + KDVDG
Sbjct: 61 IEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDG 120
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAA-LLL 258
FHP N+GRL + F PCTP G +LL G D +G VV+GRS+IVG P A LL+
Sbjct: 121 FHPENVGRLV--AGDARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLI 178
Query: 259 QRED---ATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVE 315
Q+ D ATV++ HSRT + TR+ADI+++A G P ++ GS + GA +IDVGIN V
Sbjct: 179 QKADGGNATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRV- 237
Query: 316 DAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA 364
DA + +GY LVGDV +E A E ASAITPVPGGVGPMT AMLL NT+ +A
Sbjct: 238 DADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAA 286
>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 301
Score = 317 bits (813), Expect = e-107
Identities = 153/294 (52%), Positives = 202/294 (68%), Gaps = 6/294 (2%)
Query: 78 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 137
SAK+IDGKA A ++ ++ +V +K A G+ P LAVILVG+ S YVRNK +
Sbjct: 2 MSAKLIDGKAAAARVLAQVREDVRTLK-AAGIEPALAVILVGNDPASQVYVRNKILRAEE 60
Query: 138 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 197
GI S E LP DTS+ +L I+ N DPSV+GIL+QLPLP HIDE +L A++ KDV
Sbjct: 61 AGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDV 120
Query: 198 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 257
DGFH N+G L+ +GR+ L PCTP GC+ LL D+ GK AVVIGRSNIVG P A L
Sbjct: 121 DGFHSENVGGLS-QGRDVL-TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAAL 178
Query: 258 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 317
L + +V++VHSR+ + + + RQADI+++AVG+P ++ W+KPGAV+IDVGIN ++D
Sbjct: 179 LLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD 238
Query: 318 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHNFQ 371
RLVGDV ++ A V SAITPVPGGVGPMTIA L+ NT+T+A+ + Q
Sbjct: 239 GRS---RLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAHAQ 289
>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 315 bits (809), Expect = e-107
Identities = 146/288 (50%), Positives = 186/288 (64%), Gaps = 13/288 (4%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
++DGKA A IR+E+ EV+ + G PGLAVILVG+ S YVRNK++AC+ GI
Sbjct: 3 LLDGKATAATIREELKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIV 62
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S LP DT+++E+ I+ N P + GIL+QLPLP +D Q L + KDVDGFH
Sbjct: 63 SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFH 122
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
P N+GRLA+ P F PCTP G + LL RYG GK+AVV+GRSNIVG P AL+L
Sbjct: 123 PENMGRLAL--GLPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP 180
Query: 262 ----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 317
+ATV++ HSRT + E R+AD + A+G+P V +KPGAV++DVGIN +D
Sbjct: 181 GKFANATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG 240
Query: 318 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
LVGD +E +VASAITPVPGGVGPMTIA LL NT+ S K
Sbjct: 241 -------LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK 281
>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 281
Score = 311 bits (798), Expect = e-105
Identities = 148/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
+++DGKA++ +I++ + EV +K +VPGLAVILVGD S TYV+ K KAC VGI
Sbjct: 2 QILDGKALSDKIKENVKKEVDELKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGI 61
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 200
S +P S++E+L+ I++ N++P++ GILVQLPLP HID IL A+ +KDVDGF
Sbjct: 62 YSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGF 121
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 260
HP N+GRL + G + F+PCTP G +ELL Y D+KGK V+G SNIVG P A LL
Sbjct: 122 HPYNVGRL-VTGLDG-FVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN 179
Query: 261 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 320
+ATV I H TK+ + T++ADI+I VG+PN++ +K GA++ID+GIN ED
Sbjct: 180 ANATVDICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG--- 236
Query: 321 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
RLVGDV +E + S ITPVPGGVGPMTIAMLLSNTL +AK
Sbjct: 237 ---RLVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSNTLKAAK 278
>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 297
Score = 308 bits (790), Expect = e-104
Identities = 146/291 (50%), Positives = 198/291 (68%), Gaps = 4/291 (1%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
SAK+I G + ++I +EI GEV+ +K+ G VPGL ILVG+ S +YV K K +
Sbjct: 2 SAKIIKGTEIREEILEEIRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRL 61
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
G + + + D +E+E+L I +N+D S+HGILVQLPLP HI+E+ +LNA+ +KDVD
Sbjct: 62 GFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVD 121
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
GFHP+N+GRL + G E F+PCTP G E+L R G + G VV+GRSNIVG P A ++
Sbjct: 122 GFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMM 181
Query: 259 QRE----DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPV 314
++ +ATV+IVH+R+KN ++ADI+I A G PN+V+ WIKPGA +IDVG+N V
Sbjct: 182 TQKGPGANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRV 241
Query: 315 EDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
+S L GDV ++ E+A ITPVPGGVGPMTIAML+ NTL SAK
Sbjct: 242 GTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAK 292
>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 294
Score = 307 bits (789), Expect = e-104
Identities = 140/292 (47%), Positives = 191/292 (65%), Gaps = 6/292 (2%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
+IDGK +A I + + + +K + P L VILVGD S YVRNK++ + +G+
Sbjct: 4 IIDGKKIANDITEILATCIDDLKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLR 63
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S + LP SE +++ I+ N+D SVHGILVQLP+P HID+ I+N + EKDVDGFH
Sbjct: 64 SETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFH 123
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
N+GRL ++ IPCTPKGC+ L+ ++ G AVVIGRSNIVG P A LL E
Sbjct: 124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGE 183
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
+ TV+ VHS T++ + +ADI+++AVG PN V+ SWIK GA++IDVGIN +E+
Sbjct: 184 NCTVTTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGVK- 242
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSA---KRVHNF 370
+ VGDV + E + ASAITPVPGGVGPMTIA L+ NT+ +A K + +F
Sbjct: 243 --KFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIAACNQKGIDDF 292
>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 286
Score = 307 bits (787), Expect = e-104
Identities = 145/287 (50%), Positives = 198/287 (68%), Gaps = 9/287 (3%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
AK++DGK +AK R + +V +K G P L+VILVG+ S +YVR+KKKA + +G
Sbjct: 3 AKILDGKQIAKDYRQGLQDQVEALK-EKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIG 61
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
+ S VHL E +E+EVL ++ N+D SV GILVQ+PLP + EQ IL A++ EKDVDG
Sbjct: 62 MISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDG 121
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
FHP+NIG+L + E F+PCTP G +E+L D++GK AVVIGRS+IVG P + LL
Sbjct: 122 FHPINIGKLYI--DEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLL 179
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
+++A+V+I+HSR+K+ + AD+I+SAVG+P +V +K GAVIIDVG P E+ K
Sbjct: 180 QKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENGK- 238
Query: 320 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
L GDV Y+ E+A AITPVPGGVGP+TI M+L+NTL + K
Sbjct: 239 -----LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKM 280
>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 293
Score = 307 bits (787), Expect = e-103
Identities = 139/291 (47%), Positives = 187/291 (64%), Gaps = 6/291 (2%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
++IDGKA++ QI+ EI EV+ + G P LA ILVG S TYV NK KAC+ G
Sbjct: 2 QLIDGKAISAQIKQEIAAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGF 61
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 200
S + D +E+E+L + N D V G +VQLPLP HI EQ ++ A+ KDVDGF
Sbjct: 62 KSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGF 121
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQ 259
HP+N+GR+++ P F+ TP G +ELL RY + GK+ VV+GRSNIVG P A L++Q
Sbjct: 122 HPINVGRMSI--GLPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ 179
Query: 260 RE---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 316
+ D TV++ HSR+KN ++ +ADIII+A+GQP V+ +K GAV+IDVG V D
Sbjct: 180 KAYPGDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPD 239
Query: 317 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 367
A G++L GDV ++E S ITPVPGGVGPMTI L+ NTL + K+
Sbjct: 240 ATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTLLAGKKA 290
>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 305 bits (784), Expect = e-103
Identities = 138/293 (47%), Positives = 187/293 (63%), Gaps = 9/293 (3%)
Query: 74 MASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKK 133
M +++IDGKA+AK+I E+ V R+K G+ PGLA ILVGD S YVR K K
Sbjct: 2 MDESYESRIIDGKALAKKIEAEVRSGVERLKSNRGITPGLATILVGDDPASKMYVRLKHK 61
Query: 134 ACQSVGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSM 193
AC+ VGI + + LP DT+++E+L+ I N VHGIL+QLPLP H+D Q + A+
Sbjct: 62 ACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP 121
Query: 194 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 253
KD DGFHP N+G+L M G E +PCTP G I L YG DI+GK AV++G SN+VG P
Sbjct: 122 AKDADGFHPYNMGKL-MIGDEG-LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKP 179
Query: 254 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 313
A +L +ATVS+ H T + ++ T ADI++ A G ++++ +K GAVI DVGI
Sbjct: 180 MAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITK 239
Query: 314 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
ED ++ GDV +E + AS ITPVPGGVGP+TIAML+ + L A++
Sbjct: 240 EED-------KVYGDVDFENVIKKASLITPVPGGVGPLTIAMLMKHVLMCAEK 285
>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 303 bits (778), Expect = e-102
Identities = 127/293 (43%), Positives = 180/293 (61%), Gaps = 12/293 (4%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
+A ++DGKA A +I+ ++ V+ +K+ G+ PGL +LVGD S YVR K + C V
Sbjct: 2 TAIILDGKATADEIKADLAERVAALKEK-GITPGLGTVLVGDDPGSQAYVRGKHRDCAEV 60
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
GI S LP D +++E+ I N DP+ G +VQLPLP H+DE ++L + KD D
Sbjct: 61 GITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDAD 120
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
G HP N+GRL + PL PCTP+G + LL RY ++ G VVIGR VG P LLL
Sbjct: 121 GLHPTNLGRLVLNEPAPL--PCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLL 178
Query: 259 QR--EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVED 316
R E+ATV++ H+ T++ TR+ADII++A G ++V +KPGA ++DVG++ D
Sbjct: 179 TRRSENATVTLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD 238
Query: 317 AKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVHN 369
+LVGDV + + EVA A++P PGGVGPMT A LL+N + A+R
Sbjct: 239 ------GKLVGDV-HPDVWEVAGAVSPNPGGVGPMTRAFLLTNVVERAERRAG 284
>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 293 bits (750), Expect = 3e-98
Identities = 147/288 (51%), Positives = 208/288 (72%), Gaps = 9/288 (3%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
++IDGK +AK+I++++T EV+ + G PGLAV+LVGD + S TYVRNK+K + G
Sbjct: 2 GEIIDGKKLAKEIQEKVTREVAELVK-EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAG 60
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
+ S + LPE+ +E+++L + N+D ++HGILVQLPLP HI E+ +++ +S +KDVDG
Sbjct: 61 MKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDG 120
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
FHP+N+G L + G++ F+PCTP G IEL+ G I+GKRAVVIGRSNIVG P A LL
Sbjct: 121 FHPVNVGNLFI-GKDS-FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLL 178
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
E+ATV+I HSRTK+ ++ ++ADI++ A G V+ +IKPGA++IDVG++ E+ K
Sbjct: 179 NENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDENNK- 237
Query: 320 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRV 367
L GDV +++ E A ITPVPGGVGPMTI MLL+NTL +AKR+
Sbjct: 238 -----LCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKAAKRI 280
>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NADP binding domain of the Methylene-Tetrahydrofolate
Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
bifunctional enzyme. Tetrahydrofolate is a versatile
carrier of activated one-carbon units. The major
one-carbon folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. In addition, most DHs also
have an associated cyclohydrolase activity which
catalyzes its hydrolysis to N10-formyltetrahydrofolate.
m-THF DH is typically found as part of a multifunctional
protein in eukaryotes. NADP-dependent m-THF DH in
mammals, birds and yeast are components of a
trifunctional enzyme with DH, cyclohydrolase, and
synthetase activities. Certain eukaryotic cells also
contain homodimeric bifunctional DH/cyclodrolase form.
In bacteria, monofucntional DH, as well as bifunctional
m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains the bifunctional
DH/cyclohydrolase. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains.
Length = 168
Score = 284 bits (729), Expect = 1e-96
Identities = 108/172 (62%), Positives = 133/172 (77%), Gaps = 5/172 (2%)
Query: 194 EKDVDGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP 253
EKDVDG HP+N+GRLA+ P FIPCTP G +ELL RYG D+ GK+ VV+GRSNIVG P
Sbjct: 2 EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59
Query: 254 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINP 313
A LL +ATV++ HS+TKN +E T+QADI+I AVG+P +V+G +KPGAV+IDVGIN
Sbjct: 60 LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119
Query: 314 VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
V D G +LVGDV +E A E ASAITPVPGGVGPMT+AML+ NT+ +AK
Sbjct: 120 VPD---KSGGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168
>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 279
Score = 288 bits (738), Expect = 1e-96
Identities = 140/284 (49%), Positives = 185/284 (65%), Gaps = 13/284 (4%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
++DGKAV+++ + + E+ G+ P LA ++VGD S YVR K +AC+ VGI
Sbjct: 2 ILDGKAVSEKRLELLKEEIIES----GLYPRLATVIVGDDPASQMYVRMKHRACERVGIG 57
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S + LP D + + VL+ I N+DP ++GILVQLPLP +D + ++ A+ EKDVDGFH
Sbjct: 58 SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFH 117
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
PLN+GRL + G P F PCTP G + LLH Y I GKRAVV+GRS VG P A LL
Sbjct: 118 PLNLGRL-VSGL-PGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA 175
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
DATV+I HS+T+N + RQADI++SA G+ + +KPGA +IDVGIN V
Sbjct: 176 DATVTICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG----- 230
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
+L GDV ++ E+A AITPVPGGVGPMTIA L+ NT +AK
Sbjct: 231 --KLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK 272
>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 283
Score = 287 bits (737), Expect = 3e-96
Identities = 135/289 (46%), Positives = 190/289 (65%), Gaps = 9/289 (3%)
Query: 78 ASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQS 137
A V+DGKA+AKQI +E++ V +K G P LA ILVGD SATYVR K AC+
Sbjct: 1 MMALVLDGKALAKQIEEELSVRVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRR 60
Query: 138 VGINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDV 197
VG++S +V LP++T+ +++L I N +P VHGIL+Q P+P IDE++ +A+S+ KDV
Sbjct: 61 VGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDV 120
Query: 198 DGFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALL 257
DG L GR+AM E + TP G + LL Y ++ GK AVV+GRS I+G P A++
Sbjct: 121 DGVTCLGFGRMAM--GEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMM 178
Query: 258 LQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 317
L +ATV+I HSRT+N E+ +QADII+ AVG+P +++ WIK GAV++D G +P +
Sbjct: 179 LLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGG 238
Query: 318 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
VGD+ + E+ASA TPVPGGVGPMTI L+ T+ +A++
Sbjct: 239 G-------VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQTVEAAEK 280
>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 286 bits (734), Expect = 6e-96
Identities = 145/284 (51%), Positives = 193/284 (67%), Gaps = 8/284 (2%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
++DGKA++ +I++E+ + +K G+ LAVILVGD S TYV++K KAC+ GI
Sbjct: 3 LLDGKALSAKIKEELKEKNQFLKSK-GIESCLAVILVGDNPASQTYVKSKAKACEECGIK 61
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S HL E+T++ E+L I+ N D SVHGILVQLPLP HI + IL ++ KDVDGFH
Sbjct: 62 SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH 121
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
P+N+G L + G E F+PCTP G ++LL Y D++GK AV+IG SNIVG P A +L
Sbjct: 122 PINVGYLNL-GLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA 180
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
ATVS+ H +TK+ TRQAD+II A G N++R +K G +++DVGIN +E K
Sbjct: 181 GATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLESGK--- 237
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
+VGDV +EE + +S ITPVPGGVGPMTIAMLL NT+ SAK
Sbjct: 238 ---IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAK 278
>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Length = 160
Score = 280 bits (720), Expect = 2e-95
Identities = 101/166 (60%), Positives = 127/166 (76%), Gaps = 8/166 (4%)
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 260
HP+N+GRL + EP F+PCTP+G +ELL RYG D+ GK VVIGRSNIVG P ALLL
Sbjct: 1 HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58
Query: 261 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 320
+ATV++ HS+TK+ EITR+ADI++ AVG+P +++ W+KPGAV+IDVGIN VE
Sbjct: 59 ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113
Query: 321 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
+LVGDV +E E ASAITPVPGGVGPMT+AMLL NT+ +AKR
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKR 158
>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 284 bits (728), Expect = 7e-95
Identities = 138/288 (47%), Positives = 193/288 (67%), Gaps = 9/288 (3%)
Query: 79 SAKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSV 138
+A+ + G A+ + E+ ++++ VP L V+ +G+ S +YVR K + +++
Sbjct: 2 AARELSGPPAAEAVYAELRARLAKLPF----VPHLRVVRLGEDPASVSYVRLKDRQAKAL 57
Query: 139 GINSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
G+ S LPE TS++E+L+ I+ N DP V GILVQLPLP HID Q +L A+ KDVD
Sbjct: 58 GLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVD 117
Query: 199 GFHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLL 258
GFHPLN+GRL M G E L PCTP G + LL YG + GK VV+GRSNIVG P A LL
Sbjct: 118 GFHPLNVGRLWM-GGEALE-PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALL 175
Query: 259 QREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAK 318
REDATV++ HS+T++ +TR+AD+++ AVG+P+++ ++PGAV++DVGIN V
Sbjct: 176 LREDATVTLAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNG 235
Query: 319 SPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
L GDV + E EVA A+TPVPGGVGPMT+AML++NT+ +A R
Sbjct: 236 GRD--ILTGDV-HPEVAEVAGALTPVPGGVGPMTVAMLMANTVIAALR 280
>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 278
Score = 283 bits (726), Expect = 9e-95
Identities = 116/279 (41%), Positives = 177/279 (63%), Gaps = 9/279 (3%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
++I+GK VA +I++EI V K+ +P +A ILVG+ S Y+ N++K S+GI
Sbjct: 3 QIINGKEVALKIKEEIKNFVEERKENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGI 62
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGF 200
+ ++ L E SE++++ I N D +VHGI++QLPLP H+DE+ I N + KD+D
Sbjct: 63 DFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCL 122
Query: 201 HPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQR 260
+++G+ E F+PCTP I L+ DI+GK VVIGRSNIVG P A LL
Sbjct: 123 TFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN 180
Query: 261 EDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSP 320
E+ATV+I HS+TKN +E+ ++ADI++ A+G+P + ++K GA++IDVG + V
Sbjct: 181 ENATVTICHSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG---- 236
Query: 321 RGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSN 359
++ GDV +++ + AS ITPVPGGVG +T +L+ N
Sbjct: 237 ---KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIKN 272
>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 275 bits (704), Expect = 2e-91
Identities = 147/285 (51%), Positives = 196/285 (68%), Gaps = 8/285 (2%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
+IDGK +A +++ E+ EV + A GV GL V+ VGD SA YVR K+K C+ VGI
Sbjct: 3 LIDGKQIAAKVKGEVATEVRALA-ARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT 61
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S E HLP T++ E+L I+ N DP+VHGILVQLPLP H+DE+++L+A+S KD DGFH
Sbjct: 62 SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFH 121
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
P N+G L++ G + PCTP G + +L D KGKRA+V+GRSNIVG P A++L
Sbjct: 122 PFNVGALSI-GIAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLER 180
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
ATV+I HSRT + +ADI+++A+G+ +V+G+W+K GAV+IDVG+N + D
Sbjct: 181 HATVTIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG---- 236
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
+LVGDV + A ASAITPVPGGVGPMT AMLL NT+ AKR
Sbjct: 237 --KLVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVNTVELAKR 279
>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 275 bits (704), Expect = 2e-91
Identities = 134/287 (46%), Positives = 191/287 (66%), Gaps = 9/287 (3%)
Query: 80 AKVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVG 139
A +DG+AV+K+I ++ V+++ V P LAV+LVG S YVRNK++ + +G
Sbjct: 1 ATRLDGRAVSKKILADLKQTVAKLAQQ-DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIG 59
Query: 140 INSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDG 199
+ S LPE T++ ++L ++ N DP V ILVQLPLP +DEQ++++A+ +KDVDG
Sbjct: 60 VRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDG 119
Query: 200 FHPLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQ 259
F P+++GRL EP + TP G + LL Y D+ GKR V++GRSNIVG P A L+
Sbjct: 120 FSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMV 177
Query: 260 REDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKS 319
DATV+I HS+T+N +++T++ADI++ AVG P+ + +KPGAV+IDVGI+ D K
Sbjct: 178 NHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGADGK- 236
Query: 320 PRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
L+GDV +ASAITPVPGGVGPMTIA L++ T+T AKR
Sbjct: 237 -----LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAKR 278
>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 282
Score = 266 bits (681), Expect = 6e-88
Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 8/287 (2%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
+IDGK+++K +++ + +V K + P L I+VG+ S TYV +K+KAC VGI+
Sbjct: 3 LIDGKSLSKDLKERLATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGID 62
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S + LPE T+E E+L+ I N+D SVH ILVQLPLP HI++ +++ ++ EKDVDGFH
Sbjct: 63 SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH 122
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
P N+GRL +R ++ L CTPKG + +L YG +G AVV+G SN+VG P + LL
Sbjct: 123 PTNVGRLQLRDKKCLE-SCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA 181
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
ATV+ H T + + T +ADI+I AVG+PN + +K GAV+IDVGIN V+
Sbjct: 182 KATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG----- 236
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKRVH 368
++VGDV + + +AITPVPGGVGPMTI LL NT A+ ++
Sbjct: 237 --KIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELN 281
>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 287
Score = 264 bits (676), Expect = 5e-87
Identities = 136/289 (47%), Positives = 184/289 (63%), Gaps = 10/289 (3%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
++ G A+ I I +S A PGLAV+L+G+ S YV K K +G+
Sbjct: 2 LLKGAPAAEHILATIKENISASSTA----PGLAVVLIGNDPASEVYVGMKVKKATDLGMV 57
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S LP D + ++LK I N+DP++HGILVQLPLP H+D Q+IL A+S +KDVDG H
Sbjct: 58 SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLH 117
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMP-AALLLQR 260
P+N+G+L + G FIPCTP G IELL Y + G+ ++GRSNIVG P AALL+Q+
Sbjct: 118 PVNMGKLLL-GETDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQK 176
Query: 261 E---DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDA 317
+ATV+++HS+++N EI + ADIII+A+G P ++ I AVI+DVG + V A
Sbjct: 177 HPDTNATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVP-A 235
Query: 318 KSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAKR 366
+P+GY LVGDV + AITPVPGGVGPMT+AML+ NT S R
Sbjct: 236 ANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRNTWESYLR 284
>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 288
Score = 256 bits (656), Expect = 4e-84
Identities = 123/284 (43%), Positives = 178/284 (62%), Gaps = 7/284 (2%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
+IDGKA+A +I ++ E+ +K P LA++LVGD S YV+NK K +GI+
Sbjct: 4 IIDGKALANEILADLKLEIQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGID 63
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
+ V+L +++ I+ N D + GI+VQLPLP ID+ IL+AVS KD+DGFH
Sbjct: 64 TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFH 123
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
PLN+G L G FIPCT GC+ ++ +Y ++ GK V+IGRSNIVG P + LL +E
Sbjct: 124 PLNVGYL-HSGISQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKE 182
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
+ +V+I HS+T N IT +ADI+++A+G P + + P +++IDVGIN +
Sbjct: 183 NCSVTICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS------ 236
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
G +++GDV +E ITPVPGG+GPMTIA LL NT+ + K
Sbjct: 237 GNKIIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNTVKAFK 280
>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 284
Score = 254 bits (649), Expect = 5e-83
Identities = 132/284 (46%), Positives = 182/284 (64%), Gaps = 12/284 (4%)
Query: 82 VIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGIN 141
++DGK ++++IR+EI + K +P LA ILVG+ S TYV K KAC VG+
Sbjct: 5 LLDGKKLSEKIRNEIRETIEERKTKNKRIPKLATILVGNNPASETYVSMKVKACHKVGMG 64
Query: 142 SFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFH 201
S + L E T+ +E+L I N DP+V GIL+Q P+P IDE++ + +++EKDVDG
Sbjct: 65 SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVT 124
Query: 202 PLNIGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQRE 261
L+ G+L+M G E ++PCTP G + LL YG D+ GK AVV+GRS I+G P A+LL
Sbjct: 125 TLSFGKLSM-GVET-YLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEM 182
Query: 262 DATVSIVHSRTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPR 321
+ATV++ HS+T+N I RQADII+ AVG+P ++ WI GAV++D G NP
Sbjct: 183 NATVTLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNPGN------ 236
Query: 322 GYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
VGD+ +A + +S TPVPGGVGPMTIA+LL TL S K
Sbjct: 237 ----VGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQTLYSFK 276
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 175 bits (445), Expect = 2e-54
Identities = 68/118 (57%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
Query: 81 KVIDGKAVAKQIRDEITGEVSRMKDAIGVVPGLAVILVGDRKDSATYVRNKKKACQSVGI 140
K++DGKA+AK+I++E+ EV+++K G+ P LAVILVGD S YVR+K+KA + +GI
Sbjct: 1 KILDGKALAKKIKEELKEEVAKLK-EKGITPKLAVILVGDDPASQVYVRSKRKAAEELGI 59
Query: 141 NSFEVHLPEDTSEQEVLKHISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVD 198
S + LPED +E+E+L I N DPSVHGILVQLPLP HIDE ILNA+ EKDVD
Sbjct: 60 ESELIRLPEDITEEELLALIEKLNADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117
>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of
methylene-tetrahydrofolate dehydrogenase and
methylene-tetrahydrofolate dehydrogenase/cyclohydrolase.
NAD(P) binding domains of methylene-tetrahydrofolate
dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase
bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is
a versatile carrier of activated one-carbon units. The
major one-carbon folate donors are N-5
methyltetrahydrofolate, N5,N10-m-THF, and
N10-formayltetrahydrofolate. The oxidation of metabolic
intermediate m-THF to m-THF requires the enzyme m-THF
DH. In addition, most DHs also have an associated
cyclohydrolase activity which catalyzes its hydrolysis
to N10-formyltetrahydrofolate. m-THF DH is typically
found as part of a multifunctional protein in
eukaryotes. NADP-dependent m-THF DH in mammals, birds
and yeast are components of a trifunctional enzyme with
DH, cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, mono-functional DH,
as well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express a
monofunctional DH. M-THF DH, like other amino acid
DH-like NAD(P)-binding domains, is a member of the
Rossmann fold superfamily which includes glutamate,
leucine, and phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 140
Score = 123 bits (310), Expect = 3e-34
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 218 IPCTPKGC-------IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS 270
PCTP ELL++ G + GK+ +V+GRS IVG P LLQR+ ATV
Sbjct: 1 GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60
Query: 271 RTKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVGINPVEDAKSPRGYRLVGDVC 330
+T + AD+++ +P V WIKPGA +I+ +
Sbjct: 61 KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPT---------------KLS 105
Query: 331 YEEACEVASAITPVPGGVGPMTIAMLLSNTLTSAK 365
++ E AS P+ GGVG +T+AM + N + S +
Sbjct: 106 GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140
>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of
methylene-tetrahydrofolate dehydrogenase. The
NAD-binding domain of methylene-tetrahydrofolate
dehydrogenase (m-THF DH). M-THF is a versatile carrier
of activated one-carbon units. The major one-carbon
folate donors are N-5 methyltetrahydrofolate,
N5,N10-m-THF, and N10-formayltetrahydrofolate. The
oxidation of metabolic intermediate m-THF to m-THF
requires the enzyme m-THF DH. M-THF DH is a component of
an unusual monofunctional enzyme; in eukaryotes, m-THF
DH is typically found as part of a multifunctional
protein. NADP-dependent m-THF DHs in mammals, birds and
yeast are components of a trifunctional enzyme with DH,
cyclohydrolase, and synthetase activities. Certain
eukaryotic cells also contain homodimeric bifunctional
DH/cyclodrolase form. In bacteria, monofunctional DH, as
well as bifunctional DH/cyclodrolase are found. In
addition, yeast (S. cerevisiae) also express an
monofunctional DH. This family contains only the
monofunctional DHs from S. cerevisiae and certain
bacteria. M-THF DH, like other amino acid DH-like
NAD(P)-binding domains, is a member of the Rossmann fold
superfamily which includes glutamate, leucine, and
phenylalanine DHs, m-THF DH,
methylene-tetrahydromethanopterin DH, m-THF
DH/cyclohydrolase, Shikimate DH-like proteins, malate
oxidoreductases, and glutamyl tRNA reductase. Amino acid
DHs catalyze the deamination of amino acids to keto
acids with NAD(P)+ as a cofactor. The NAD(P)-binding
Rossmann fold superfamily includes a wide variety of
protein families including NAD(P)- binding domains of
alcohol DHs, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 197
Score = 77.9 bits (192), Expect = 6e-17
Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 58/207 (28%)
Query: 194 EKDVDGFHPL-------NIGRLAMRGREPLFIPCTPKGCIELLH---------RYGFDIK 237
KDV+G NI L R+ +PCTP +++L YG +
Sbjct: 2 HKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLY 61
Query: 238 GKRAVVIGRSNIVGMPAALLLQREDATV-SI--------------------VHSRTKNPE 276
GK +I RS +VG P A LL + A V S+ V
Sbjct: 62 GKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTL 121
Query: 277 EITRQADIIISAVGQPNM-VRGSWIKPGAVIIDV-GINPVEDAKSPRGYRLVGDVCYEEA 334
+ Q+D++I+ V PN V +K GA+ I+ I E
Sbjct: 122 DCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEP----------------SV 165
Query: 335 CEVASAITPVPGGVGPMTIAMLLSNTL 361
E AS P +G +TIAMLL N L
Sbjct: 166 KEKASIYVPS---IGKVTIAMLLRNLL 189
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino
acid dehydrogenase-like proteins. Amino acid
dehydrogenase(DH)-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and are found
in glutamate, leucine, and phenylalanine DHs (DHs),
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 86
Score = 44.3 bits (105), Expect = 4e-06
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 220 CTPKGCIELLHRYGF----DIKGKRAVVIGRSNIVGMP-AALLLQREDATVSIVHSRTKN 274
T G + LL G +KGK VV+G VG A LL V +
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGE-VGKGIAKLLADEGGKKVVLCDR---- 55
Query: 275 PEEITRQADIIISAVGQPNMVRG---SWIKPGAVIIDVG 310
DI+++A V + I GAV+ID+
Sbjct: 56 --------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. Alanine dehydrogenase catalyzes the
NAD-dependent reversible reductive amination of pyruvate
into alanine.
Length = 149
Score = 37.9 bits (89), Expect = 0.002
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 263 ATVSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI- 311
A + ++S+ + EE ++AD++I AV P MV+ +KPG+VI+DV
Sbjct: 65 ARFTTLYSQAELLEEAVKEADLVIGAVLIPGAKAPKLVTREMVKS--MKPGSVIVDVAAD 122
Query: 312 --NPVEDAK 318
+E ++
Sbjct: 123 QGGCIETSR 131
>gnl|CDD|240630 cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic
domains. Alanine dehydrogenase (L-AlaDH) catalyzes the
NAD-dependent conversion of pyruvate to L-alanine via
reductive amination. Like formate dehydrogenase and
related enzymes, L-AlaDH is comprised of 2 domains
connected by a long alpha helical stretch, each
resembling a Rossmann fold NAD-binding domain. The
NAD-binding domain is inserted within the linear
sequence of the more divergent catalytic domain. Ligand
binding and active site residues are found in the cleft
between the subdomains. L-AlaDH is typically hexameric
and is critical in carbon and nitrogen metabolism in
micro-organisms.
Length = 359
Score = 38.5 bits (91), Expect = 0.004
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 12/57 (21%)
Query: 265 VSIVHSRTKNPEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGI 311
V+ ++S N EE ++AD++I AV P MV+ +KPG+VI+DV I
Sbjct: 215 VTTLYSNPANLEEALKEADLVIGAVLIPGAKAPKLVTEEMVK--TMKPGSVIVDVAI 269
>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
tetrahydromethanopterin dehydrogenase. Methylene
Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
binding domain. NADP-dependent H4MPT DH catalyzes the
dehydrogenation of methylene- H4MPT and
methylene-tetrahydrofolate (H4F) with NADP+ as cofactor.
H4F and H4MPT are both cofactors that carry the
one-carbon units between the formyl and methyl oxidation
level. H4F and H4MPT are structurally analogous to each
other with respect to the pterin moiety, but each has
distinct side chain. H4MPT is present only in anaerobic
methanogenic archaea and aerobic methylotrophic
proteobacteria. H4MPT seems to have evolved
independently from H4F and functions as a distinct
carrier in C1 metabolism. Amino acid DH-like
NAD(P)-binding domains are members of the Rossmann fold
superfamily and include glutamate, leucine, and
phenylalanine DHs, methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha-beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 194
Score = 37.0 bits (86), Expect = 0.008
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 31/115 (26%)
Query: 229 LHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEIT--------- 279
L G D+KGK AVV+G + VG AA+LL RE A V +V R +
Sbjct: 19 LELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GRDLERAQKAADSLRARFG 77
Query: 280 ------------------RQADIII--SAVGQPNMVRGSW-IKPGAVIIDVGINP 313
+ AD++ A G + + +W KP AV DV P
Sbjct: 78 EGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVP 132
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 1. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
assimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 227
Score = 36.7 bits (86), Expect = 0.009
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 224 GCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 265
E L + G + G R + G N VG AA L A V
Sbjct: 17 ATREALKKLGIGLAGARVAIQGFGN-VGSHAARFLHEAGAKV 57
>gnl|CDD|180421 PRK06141, PRK06141, ornithine cyclodeaminase; Validated.
Length = 314
Score = 36.4 bits (85), Expect = 0.015
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 254 AALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPN-MVRGSWIKPGA 304
A L Q DA V + E RQADII A +VRG W+KPG
Sbjct: 168 AELRAQGFDAEVV------TDLEAAVRQADIISCATLSTEPLVRGEWLKPGT 213
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 34.6 bits (80), Expect = 0.028
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 37/123 (30%)
Query: 224 GCIELLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK----- 273
G + L G ++KGK+ +++G R+ L + A + IV +RT
Sbjct: 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYA-----LAELGAAKIVIV-NRTLEKAKA 58
Query: 274 ---------------NPEEITRQADIIISAV-----GQPNM-VRGSWIKPGAVIIDVGIN 312
+ EE+ +AD+II+ + + S +KPG V+ DV N
Sbjct: 59 LAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN 118
Query: 313 PVE 315
P+E
Sbjct: 119 PLE 121
>gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
metabolism].
Length = 371
Score = 35.4 bits (82), Expect = 0.037
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 30/105 (28%)
Query: 236 IKGKRAVVIGRSNIVGMPAALLLQREDATVSI------------------VHSRTKNP-- 275
+ + VV+G +VG AA + A V+I VH+ P
Sbjct: 166 VLPAKVVVLG-GGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSN 224
Query: 276 -EEITRQADIIISAV-----GQPNMVRGSWI---KPGAVIIDVGI 311
EE ++AD++I AV P +V + KPG+VI+DV I
Sbjct: 225 IEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAI 269
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific
2-hydroxy acid dehydrogenases and related
dehydrogenases. The formate/glycerate dehydrogenase
like family contains a diverse group of enzymes such as
formate dehydrogenase (FDH), glycerate dehydrogenase
(GDH), D-lactate dehydrogenase, L-alanine dehydrogenase,
and S-Adenosylhomocysteine hydrolase, that share a
common 2-domain structure. Despite often low sequence
identity, these proteins typically have a characteristic
arrangement of 2 similar domains of the alpha/beta
Rossmann fold NAD+ binding form. The NAD(P) binding
domain is inserted within the linear sequence of the
mostly N-terminal catalytic domain. Structurally, these
domains are connected by extended alpha helices and
create a cleft in which NAD(P) is bound, primarily to
the C-terminal portion of the 2nd (internal) domain.
While many members of this family are dimeric, alanine
DH is hexameric and phosphoglycerate DH is tetrameric.
2-hydroxyacid dehydrogenases are enzymes that catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate dehydrogenase (FDH) catalyzes the NAD+-dependent
oxidation of formate ion to carbon dioxide with the
concomitant reduction of NAD+ to NADH. FDHs of this
family contain no metal ions or prosthetic groups.
Catalysis occurs though direct transfer of a hydride ion
to NAD+ without the stages of acid-base catalysis
typically found in related dehydrogenases.
Length = 310
Score = 34.5 bits (79), Expect = 0.066
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 235 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE--------------EITR 280
D+ GK VV+G + +VG AA +L+ A V I + E E
Sbjct: 157 DVAGKTVVVVG-AGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALA 215
Query: 281 QADIIISAVGQPNMVRGSWI--------KPGAVIIDVGINPVEDAKSPRGYRLVG 327
+AD+I++ P G + KPG+VI++V + V ++ L
Sbjct: 216 EADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEE 270
>gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 34.3 bits (79), Expect = 0.077
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 231 RYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG 290
R D+ GKR ++ G S+ +G AA R ATV V R + + AD I A G
Sbjct: 33 RQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV---ADRITRAGG 89
>gnl|CDD|235738 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
Length = 379
Score = 33.5 bits (77), Expect = 0.16
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 264 TVSIVHSRTKNPEEITRQADIIISA----VGQPN---MVRGSWIKPGAVIIDVGINPVED 316
V +V S EE+ R +DI+ G P+ V+ W+KPGA ++ +++
Sbjct: 210 NVEVVDSI----EEVVRGSDIVTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRIDE 265
Query: 317 AKSPRGYRLVGD------VCYEEACEVASAITPVPGG 347
R V D +EE + A + PV G
Sbjct: 266 GMEQGDVRKVVDNTGLYEAWFEEVPKPAHNLIPVIGV 302
>gnl|CDD|223450 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 33.4 bits (77), Expect = 0.18
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 226 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP---------- 275
+EL R +K K+ +VIG + G A L + + +RT
Sbjct: 166 VELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGA 224
Query: 276 -----EEIT---RQADIIISAVGQP-------NMVRGSWIKPGAVIIDVGINP 313
EE+ +AD++IS+ P + R I+ +I+D+ P
Sbjct: 225 EAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIA-VP 276
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related
proteins of the D-specific 2-hydroxy dehydrogenase
family. This group contains a variety of proteins
variously identified as glycerate dehydrogenase (GDH,
aka Hydroxypyruvate Reductase) and other enzymes of the
2-hydroxyacid dehydrogenase family. GDH catalyzes the
reversible reaction of (R)-glycerate + NAD+ to
hydroxypyruvate + NADH + H+. 2-hydroxyacid
dehydrogenases catalyze the conversion of a wide variety
of D-2-hydroxy acids to their corresponding keto acids.
The general mechanism is (R)-lactate + acceptor to
pyruvate + reduced acceptor. Formate/glycerate and
related dehydrogenases of the D-specific 2-hydroxyacid
dehydrogenase superfamily include groups such as formate
dehydrogenase, glycerate dehydrogenase, L-alanine
dehydrogenase, and S-adenosylhomocysteine hydrolase.
Despite often low sequence identity, these proteins
typically have a characteristic arrangement of 2 similar
subdomains of the alpha/beta Rossmann-fold NAD+ binding
form. The NAD+ binding domain is inserted within the
linear sequence of the mostly N-terminal catalytic
domain, which has a similar domain structure to the
internal NAD binding domain. Structurally, these domains
are connected by extended alpha helices and create a
cleft in which NAD is bound, primarily to the C-terminal
portion of the 2nd (internal) domain. Some related
proteins have similar structural subdomain but with a
tandem arrangement of the catalytic and NAD-binding
subdomains in the linear sequence. While many members of
this family are dimeric, alanine DH is hexameric and
phosphoglycerate DH is tetrameric.
Length = 315
Score = 33.0 bits (76), Expect = 0.22
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 233 GFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------------EEITR 280
G ++ GK ++G I G+ A L + V + +SR++ +E+
Sbjct: 139 GRELAGKTVGIVGTGAI-GLRVARLFKAFGCKV-LAYSRSEKEEAKALGIEYVSLDELLA 196
Query: 281 QADIIISAVGQPNMVRG-------SWIKPGAVIIDVGINPVEDAK 318
++DI+ + + +G + +K A++I+ PV D +
Sbjct: 197 ESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNE 241
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 33.3 bits (76), Expect = 0.22
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 235 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK 273
++KGK VIG N M AA +R V+IV+ RTK
Sbjct: 444 EVKGKEVFVIGGGN-TAMDAARTAKRLGGNVTIVYRRTK 481
>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino
acid transport and metabolism].
Length = 411
Score = 33.0 bits (76), Expect = 0.24
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 9/59 (15%)
Query: 211 RGREPLFIPCTPKGCI----ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATV 265
GR T G E L G D++G R V G N VG AA L A V
Sbjct: 180 LGRSE----ATGYGVFYAIREALKALGDDLEGARVAVQGFGN-VGQYAAEKLHELGAKV 233
>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 32.9 bits (76), Expect = 0.25
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 38/114 (33%)
Query: 228 LLHRYGFDIKGKRAVVIG-----RSNIVGMPAALLLQREDATVSIVHSRTK--------- 273
L R G D+KGKR +++G R+ I+ LL A ++IV +RT
Sbjct: 113 LEERLGVDLKGKRILILGAGGAARAVILP-----LLDLGVAEITIV-NRTVERAEELAKL 166
Query: 274 -----------NPEEITRQADIIISA--VG-QPNMVRG----SWIKPGAVIIDV 309
+E D+II+A G + S ++PG ++ D+
Sbjct: 167 FGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM 220
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 32.0 bits (74), Expect = 0.26
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 52/139 (37%)
Query: 251 GMPAALLLQREDATVSIVHSRTK---------------NPEEITRQADIIISAVGQPNMV 295
G P AL L + TV+ V++RT +P E AD++I+ V V
Sbjct: 12 GSPMALNLLKAGYTVT-VYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAV 70
Query: 296 RGSW---------IKPGAVIIDVG-INPVEDAK------SPRGYRLVGDVCYEEACEVAS 339
+KPG +IID +P +D + + +G +
Sbjct: 71 DAVILGEDGLLPGLKPGDIIIDGSTSDP-DDTRRRAKELAEKGIHFLD------------ 117
Query: 340 AITPVPGGV-----GPMTI 353
PV GG G ++I
Sbjct: 118 --APVSGGEEGAEAGTLSI 134
>gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.
Length = 261
Score = 32.4 bits (74), Expect = 0.26
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 235 DIKGKRAVVIGRSNIVGMPAALLLQREDATVSI-VHSRTKNPEEITRQADIIISAVGQPN 293
D++GK V+ G S +G A+ +E A V I S + ++ A+ I A G+
Sbjct: 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDV---AEEIKKAGGEAI 60
Query: 294 MVRG 297
V+G
Sbjct: 61 AVKG 64
>gnl|CDD|225280 COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin
homolog [Amino acid transport and metabolism].
Length = 330
Score = 32.7 bits (75), Expect = 0.29
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 270 SRTKNPEEITRQADIIISA-VGQPNMVRGSWIKPGAVIIDVGINPVE 315
+ EE ADI+++A +++ W+KPG I +G +
Sbjct: 184 GAADSAEEAVEGADIVVTATPSTEPVLKAEWLKPGTHINAIGADAPG 230
>gnl|CDD|129609 TIGR00518, alaDH, alanine dehydrogenase. The family of known
L-alanine dehydrogenases includes representatives from
the Proteobacteria, Firmicutes, and Cyanobacteria, all
with about 50 % identity or better. An outlier to this
group in both sequence and gap pattern is the homolog
from Helicobacter pylori, an epsilon division
Proteobacteria, which must be considered a putative
alanine dehydrogenase. Related proteins include
saccharopine dehydrogenase and the N-terminal half of
the NAD(P) transhydrogenase alpha subunit. All of these
related proteins bind NAD and/or NADP [Energy
metabolism, Amino acids and amines].
Length = 370
Score = 32.6 bits (74), Expect = 0.33
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 257 LLQREDATVSIVHSRTKNPEEI---TRQADIIISAV-----GQPNMVRGSWI---KPGAV 305
L Q + +H+R N EI ++AD++I AV P +V S + KPGAV
Sbjct: 203 LRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAV 262
Query: 306 IIDVGINP---VEDAKSPRGYRLVGDVCYEEACEVASAITPVPGGVGPMTIAMLLSNT 360
I+DV I+ VE ++ P + Y V + +PG V P T L+N
Sbjct: 263 IVDVAIDQGGCVETSR-PTTH---DQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNA 315
>gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional.
Length = 253
Score = 31.5 bits (71), Expect = 0.49
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISA----- 288
FD+ GKRA++ G S +G AL A V+I ++ + + + AD I ++
Sbjct: 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIA---ARHLDALEKLADEIGTSGGKVV 61
Query: 289 -----VGQPNMVRG 297
V Q V
Sbjct: 62 PVCCDVSQHQQVTS 75
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism
/ General function prediction only].
Length = 324
Score = 31.8 bits (73), Expect = 0.53
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 26/106 (24%)
Query: 227 ELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPE---------- 276
GFD++GK +IG I G A L+ V + + R+ NPE
Sbjct: 135 GPDPLLGFDLRGKTLGIIGLGRI-GQAVARRLKGFGMKV-LYYDRSPNPEAEKELGARYV 192
Query: 277 ---EITRQADIIISAVGQP------NMV---RGSWIKPGAVIIDVG 310
E+ ++DII P +++ + +KPGA++++
Sbjct: 193 DLDELLAESDIISLHC--PLTPETRHLINAEELAKMKPGAILVNTA 236
>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase.
Length = 426
Score = 31.4 bits (72), Expect = 0.71
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 236 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHS-------------RTKNPEEITRQA 282
I GK AVV G + VG A L+ + A V + EE+ QA
Sbjct: 205 IAGKVAVVCGYGD-VGKGCAQSLRGQGARVIVTEIDPICALQAAMDGFEVVTMEEVAPQA 263
Query: 283 DIIISAVGQPNMVRGSWI---KPGAVIIDVG 310
DI ++ G +++ + K GA++ ++G
Sbjct: 264 DIFVTTTGNKDVITREHMRAMKDGAIVCNIG 294
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 31.0 bits (71), Expect = 0.90
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 274 NPEEITRQADIIISAVGQPNMVRG---------SWIKPGAVIIDVGINPVEDAK 318
+P E +AD++I+ + VR +KPGA++ID+ E A+
Sbjct: 50 SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETAR 103
>gnl|CDD|217026 pfam02423, OCD_Mu_crystall, Ornithine cyclodeaminase/mu-crystallin
family. This family contains the bacterial Ornithine
cyclodeaminase enzyme EC:4.3.1.12, which catalyzes the
deamination of ornithine to proline. This family also
contains mu-Crystallin the major component of the eye
lens in several Australian marsupials, mRNA for this
protein has also been found in human retina.
Length = 313
Score = 30.8 bits (70), Expect = 0.96
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 255 ALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPN--MVRGSWIKPGAVIIDVGIN 312
A LQ + + EE ADI+++ +++ W+KPG I VG +
Sbjct: 171 ARNLQEPGFEIVAC----TSAEEAVEGADIVVTVTPDKEFPILKAEWVKPGVHINAVGAD 226
Query: 313 PVEDAKSPRGYRLVGDVCYE 332
+ L D+ +
Sbjct: 227 CPGKTELDPDILLRADIFVD 246
>gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 253
Score = 30.8 bits (70), Expect = 1.0
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 237 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVG-QPNMV 295
GK A++ G S+ +G A+L R A +++ + EE TRQ+ + + +V
Sbjct: 2 SGKVAIITGSSSGIGAGTAILFARLGARLALTGRDAERLEE-TRQSCLQAGVSEKKILLV 60
Query: 296 RG 297
Sbjct: 61 VA 62
>gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional.
Length = 252
Score = 30.4 bits (69), Expect = 1.2
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 291
FD+ GK A+V G S +G A LL ++ A V IV SR + AD I++A G+
Sbjct: 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHV-IVSSR--KLDGCQAVADAIVAAGGK 58
>gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 250
Score = 30.1 bits (68), Expect = 1.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 238 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP-----EEIT---RQADIIISAV 289
GK A+V G S +G AL L E +++ ++R++ EEI R+A + + V
Sbjct: 4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANV 63
Query: 290 GQPNMVRG 297
G ++
Sbjct: 64 GDVEKIKE 71
>gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional.
Length = 290
Score = 30.4 bits (69), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 236 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQA 282
+KGK A++ G + +G A+L +E A ++IV+ T+Q
Sbjct: 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQR 90
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 267
++G+ AVV G S+ +G+ LL A+V+I
Sbjct: 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAI 37
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 175
Score = 29.4 bits (67), Expect = 2.0
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 25/109 (22%)
Query: 223 KGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNP------- 275
G G ++ GK +IG I G A L+ V I + R
Sbjct: 20 AGRWRPDALLGRELSGKTVGIIGLGRI-GRAVARRLKAFGMKV-IAYDRYPKAEAEALGA 77
Query: 276 -----EEITRQADIIISAVGQP------NMV---RGSWIKPGAVIIDVG 310
+E+ ++D++ + P +++ R + +KPGA++I+
Sbjct: 78 RYVSLDELLAESDVVSLHL--PLTPETRHLINAERLALMKPGAILINTA 124
>gnl|CDD|72716 pfam09301, DUF1970, Domain of unknown function (DUF1970). Members
of this family consist of various uncharacterized viral
hypothetical proteins.
Length = 117
Score = 28.6 bits (63), Expect = 2.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 50 PASLRTTLTV--HSSPSPSLPVMNATMASE--ASAKVIDGKAVAKQIRDEITGEVS 101
P + TL V ++SPS +LP N + SA + G +A ++ D IT +++
Sbjct: 46 PQAGSVTLPVAGYTSPSLTLPNRNRSCGCNPAVSAAMAQGADLASKLTDSITSQLN 101
>gnl|CDD|197280 cd09183, PLDc_FAM83C_N, N-terminal phospholipase D-like domain of
the uncharacterized protein, Family with sequence
similarity 83C. N-terminal phospholipase D (PLD)-like
domain of the uncharacterized protein, Family with
sequence similarity 83C (FAM83C). Since the N-terminal
PLD-like domain of FAM83 proteins shows only trace
similarity to the PLD catalytic domain and lacks the
functionally important histidine residue, FAM83 proteins
may share a similar three-dimensional fold with PLD
enzymes, but are most unlikely to carry PLD activity.
The N-terminus of FAM83C shows high homology to other
FAM83 family members, indicating that FAM83C might have
arisen early in vertebrate evolution by duplication of a
gene in the FAM83 family.
Length = 274
Score = 29.4 bits (66), Expect = 3.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 65 PSLPVMNATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDAIGVV 110
P +P+ AT AS A++ + A I+D I +S K I +V
Sbjct: 103 PEIPL--ATKASPTEAQIFFQRDKANNIKDLIRSLISMAKTVIAIV 146
>gnl|CDD|233242 TIGR01035, hemA, glutamyl-tRNA reductase. This enzyme, together
with glutamate-1-semialdehyde-2,1-aminomutase
(TIGR00713), leads to the production of
delta-amino-levulinic acid from Glu-tRNA [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 417
Score = 29.3 bits (66), Expect = 3.9
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 226 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------- 272
+EL R +KGK+A++IG + + A LL++ + I +RT
Sbjct: 168 VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIA-NRTYERAEDLAKELGG 226
Query: 273 -----KNPEEITRQADIIISAVGQPNMV 295
++ EE +ADI+IS+ G P+ +
Sbjct: 227 EAVKFEDLEEYLAEADIVISSTGAPHPI 254
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 28.8 bits (65), Expect = 4.3
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 19/86 (22%)
Query: 226 IELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPE 276
+EL + ++KGK+ +VIG + G AA L + + +RT +
Sbjct: 166 VELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGG 224
Query: 277 EITR---------QADIIISAVGQPN 293
+AD++ISA G P+
Sbjct: 225 NAVPLDELLELLNEADVVISATGAPH 250
>gnl|CDD|116052 pfam07431, DUF1512, Protein of unknown function (DUF1512). This
family consists of several archaeal proteins of around
370 residues in length. The function of this family is
unknown.
Length = 356
Score = 28.9 bits (65), Expect = 4.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 331 YEEACEVASAITPVPGGVGPMTIAMLLSN 359
Y EAC P+ GP+ A L+ N
Sbjct: 169 YMEACNAFLKGVPIGDSAGPLVAARLIGN 197
>gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase.
N(5)-(carboxyethyl)ornithine synthase (ceo_syn)
catalyzes the NADP-dependent conversion of
N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine +
pyruvate. Ornithine plays a key role in the urea cycle,
which in mammals is used in arginine biosynthesis, and
is a precursor in polyamine synthesis. ceo_syn is
related to the NAD-dependent L-alanine dehydrogenases.
Like formate dehydrogenase and related enzymes, ceo_syn
is comprised of 2 domains connected by a long alpha
helical stretch, each resembling a Rossmann fold
NAD-binding domain. The NAD-binding domain is inserted
within the linear sequence of the more divergent
catalytic domain. These ceo_syn proteins have a
partially conserved NAD-binding motif and active site
residues that are characteristic of related enzymes such
as Saccharopine Dehydrogenase.
Length = 295
Score = 28.7 bits (65), Expect = 4.4
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 12/82 (14%)
Query: 238 GKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKN--PEEITRQADIIISAVGQPNMV 295
+ V+G N A L+ A V++ RT+ EE++ + DII++ + Q
Sbjct: 154 QTKVAVLGFGN-TARGAIRALKLGGADVTVYTRRTEALFKEELS-EYDIIVNCILQDTDR 211
Query: 296 RGSWI--------KPGAVIIDV 309
I KPGA+IIDV
Sbjct: 212 PDHIIYEEDLKRLKPGALIIDV 233
>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related
dehydrogenases. Alanine dehydrogenase/Transhydrogenase,
such as the hexameric L-alanine dehydrogenase of
Phormidium lapideum, contain 2 Rossmann fold-like
domains linked by an alpha helical region. Related
proteins include Saccharopine Dehydrogenase (SDH),
bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme,
N(5)-(carboxyethyl)ornithine synthase, and Rubrum
transdehydrogenase. Alanine dehydrogenase (L-AlaDH)
catalyzes the NAD-dependent conversion of pyrucate to
L-alanine via reductive amination. Transhydrogenases
found in bacterial and inner mitochondrial membranes
link NAD(P)(H)-dependent redox reactions to proton
translocation. The energy of the proton electrochemical
gradient (delta-p), generated by the respiratory
electron transport chain, is consumed by
transhydrogenase in NAD(P)+ reduction. Transhydrogenase
is likely involved in the regulation of the citric acid
cycle. Rubrum transhydrogenase has 3 components, dI,
dII, and dIII. dII spans the membrane while dI and dIII
protrude on the cytoplasmic/matirx side. DI contains 2
domains with Rossmann folds, linked by a long alpha
helix, and contains a NAD binding site. Two dI
polypeptides (represented in this sub-family)
spontaneously form a heterotrimer with one dIII in the
absence of dII. In the heterotrimer, both dI chains may
bind NAD, but only one is well-ordered. dIII also binds
a well-ordered NADP, but in a different orientation than
classical Rossmann domains.
Length = 317
Score = 28.9 bits (65), Expect = 4.6
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 275 PEEITRQADIIISAVGQPN----------MVRGSWIKPGAVIIDVGINP 313
E+ +Q DI+I+A+ +V +K GAVI+D+ +
Sbjct: 217 LEKELKQTDILINAILVDGPRAPILIMEELV--GPMKRGAVIVDLAADQ 263
>gnl|CDD|234016 TIGR02791, VirB5, P-type DNA transfer protein VirB5. The VirB5
protein is involved in the type IV DNA secretion systems
typified by the Agrobacterium Ti plasmid vir system
where it interacts with several other proteins essential
for proper pilus formation. VirB5 is homologous to the
IncN (N-type) conjugation system protein TraC as well as
the P-type protein TrbJ and the F-type protein TraE.
Length = 220
Score = 28.7 bits (64), Expect = 4.7
Identities = 13/67 (19%), Positives = 30/67 (44%)
Query: 47 PSLPASLRTTLTVHSSPSPSLPVMNATMASEASAKVIDGKAVAKQIRDEITGEVSRMKDA 106
++ +L L S+ +PV + + A A+ I+ A K ++++ ++ + K
Sbjct: 4 HAISCALTAALAAASAAVAGIPVTDPASIANALAQAIEQMAALKTQYEQLSEQIEQYKQQ 63
Query: 107 IGVVPGL 113
G + G
Sbjct: 64 YGSLTGN 70
>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional.
Length = 254
Score = 28.7 bits (65), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 237 KGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQPNMVR 296
GK A++ G S+ +G AA L RE A V +V +R E+ + I + G+ +
Sbjct: 5 NGKVAIITGASSGIGRAAAKLFAREGAKV-VVGAR--RQAELDQLVAEIRAEGGEAVALA 61
Query: 297 G 297
G
Sbjct: 62 G 62
>gnl|CDD|236313 PRK08618, PRK08618, ornithine cyclodeaminase; Validated.
Length = 325
Score = 28.9 bits (65), Expect = 4.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 272 TKNPEEITRQADIIISAVGQPNMVRGSWIKPGAVIIDVG 310
+ +E +ADII++ V +K G I VG
Sbjct: 183 VNSADEAIEEADIIVTVTNAKTPVFSEKLKKGVHINAVG 221
>gnl|CDD|218150 pfam04559, Herpes_UL17, Herpesvirus UL17 protein. UL17 protein is
required for DNA cleavage and packaging in herpes
viruses. It has been shown to associate with immature
B-type capsids, and is required for the the localisation
of capsids and capsid proteins to the intranuclear sites
where viral DNA is cleaved and packaged. In the virion,
UL17 is a component of the tegument, which is a protein
layer surrounding the viral capsid.
Length = 496
Score = 28.9 bits (65), Expect = 5.4
Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 23/133 (17%)
Query: 159 HISVFNDDPSVHGILVQLPLPCHIDEQSILNAVSMEKDVDGFHPLNIG--RLAMRGREPL 216
VF + + G+ LP+ C E D + P ++ RL++ E
Sbjct: 76 RSPVFRRERAPGGLFTSLPIFCE------------EGDPGRYDPFDVVALRLSIPDGEFR 123
Query: 217 FIPCTPKGCIELL---HRYGFDIKGKRAVVIGRSNIVGMPAALLLQR---EDATVSIVHS 270
I T ELL RY D + R + + AAL +
Sbjct: 124 DILFTYL---ELLPGGTRYNADGRRLRELCRQFLAYIRRGAALPPAAAPGAFDEPAPEAR 180
Query: 271 RTKNPEEITRQAD 283
EI
Sbjct: 181 LEDPFFEILSLIR 193
>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal
domain. This family now also contains the lysine
2-oxoglutarate reductases.
Length = 150
Score = 27.9 bits (63), Expect = 5.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 264 TVSIVHSRTKNPEEITRQADIIISAVGQP----------NMVRGSWIKPGAVIIDVGI 311
+ + S + E +AD++I V P MV+ +KPG+VI+DV I
Sbjct: 67 VETDIFSNCEYLAEAIAEADLVIGTVLIPGARAPKLVTREMVKT--MKPGSVIVDVAI 122
>gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 28.3 bits (64), Expect = 6.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV 268
F +KGK AV+ G ++G A L R A V+I+
Sbjct: 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAIL 40
>gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical
(c) SDR. CAD catalyzes the NADP-dependent reduction of
clavulanate-9-aldehyde to clavulanic acid, a
beta-lactamase inhibitor. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 243
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 236 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQ 281
++GK A+V G S+ +G A L E A V+I R E + +
Sbjct: 1 LQGKVALVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADE 46
>gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase.
Length = 410
Score = 28.2 bits (63), Expect = 7.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 205 IGRLAMRGREPLFIPCTPKGCIELLHRYGFDIKGKRAVVIGRSNIVGMPAALLLQREDA- 263
+GR A GR +F LL +G I G+ V+ G N VG AA L+ +
Sbjct: 179 LGREAATGRGVVF------ATEALLAEHGKSIAGQTFVIQGFGN-VGSWAAQLIHEKGGK 231
Query: 264 --TVSIVHSRTKNPEEI 278
VS + KN +
Sbjct: 232 IVAVSDITGAVKNENGL 248
>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like,
classical (c) SDRs. Ga5DH catalyzes the NADP-dependent
conversion of carbon source D-gluconate and
5-keto-D-gluconate. This SDR subgroup has a classical
Gly-rich NAD(P)-binding motif and a conserved active
site tetrad pattern. However, it has been proposed that
Arg104 (Streptococcus suis Ga5DH numbering), as well as
an active site Ca2+, play a critical role in catalysis.
In addition to Ga5DHs this subgroup contains Erwinia
chrysanthemi KduD which is involved in pectin
degradation, and is a putative
2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107,15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 248
Score = 28.1 bits (63), Expect = 7.4
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRQADIIISAVGQ 291
F +KGK A+V G S +G A L A + +++SR + E +Q I G
Sbjct: 1 FSLKGKVALVTGASRGIGFGIASGLAEAGANI-VINSRNEEKAEEAQQL---IEKEGV 54
>gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional.
Length = 255
Score = 28.2 bits (63), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSI 267
FD+ G+RA+V G S +G A L + A V +
Sbjct: 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVIL 39
>gnl|CDD|222002 pfam13241, NAD_binding_7, Putative NAD(P)-binding. This domain is
found in fungi, plants, archaea and bacteria.
Length = 104
Score = 26.6 bits (60), Expect = 8.3
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV-------------HSRTKNPEEITR 280
D+KGKR +V+G V + L A V++V R P ++
Sbjct: 3 LDLKGKRVLVVGGGE-VALRKIRALLEAGAKVTVVSPEILEAEGLVRLIQREFEPGDLDG 61
Query: 281 QADIIISAVGQP 292
AD++I+A P
Sbjct: 62 -ADLVIAATDDP 72
>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase
NodG; Reviewed.
Length = 245
Score = 28.0 bits (62), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 234 FDIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEI 278
FD+ G++A+V G S +G A LL + A V + +R + E +
Sbjct: 2 FDLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEAL 46
>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.
Length = 423
Score = 28.2 bits (64), Expect = 8.6
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 31/93 (33%)
Query: 235 DIKGKRAVVIGRSNIVGMPAALL---LQREDATVSIVHSRTKN----------------- 274
D+ GK+ +VIG G L+ L + V +RT
Sbjct: 179 DLSGKKVLVIG----AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLD 234
Query: 275 --PEEITRQADIIISAVGQPNMVRGSWIKPGAV 305
PE + +ADI+IS+ G P+ + I G V
Sbjct: 235 ELPEAL-AEADIVISSTGAPHPI----IGKGMV 262
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 27.5 bits (62), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 78 ASAKVIDGKAVAKQIRDEITGEVS 101
A + ID +AV K+I + I G VS
Sbjct: 32 AKSGRIDFEAVLKEICEIIDGPVS 55
>gnl|CDD|236016 PRK07424, PRK07424, bifunctional sterol desaturase/short chain
dehydrogenase; Validated.
Length = 406
Score = 27.7 bits (62), Expect = 9.6
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 233 GFDIKGKRAVVIGRSNIVGMPAALL--LQREDATVSIVHSRTKNPEEITRQAD------- 283
+KGK V G S +G ALL L ++ A V + T N ++IT + +
Sbjct: 173 ALSLKGKTVAVTGASGTLGQ--ALLKELHQQGAKVVAL---TSNSDKITLEINGEDLPVK 227
Query: 284 IIISAVGQPNMVRGSWIKPGAVIIDVGIN 312
+ VGQ + K +II+ GIN
Sbjct: 228 TLHWQVGQEAALAELLEKVDILIINHGIN 256
>gnl|CDD|235205 PRK04028, PRK04028, glutamyl-tRNA(Gln) amidotransferase subunit E;
Validated.
Length = 630
Score = 27.9 bits (63), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 99 EVSRMKDAIGVVPGLAVILVGDRKDSA 125
EV +++A+G A ILV D ++ A
Sbjct: 359 EVEALREALGAGENDAFILVADEEEKA 385
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0831 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,974,190
Number of extensions: 1865782
Number of successful extensions: 2097
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1982
Number of HSP's successfully gapped: 126
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)