BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017439
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 175/360 (48%), Gaps = 52/360 (14%)
Query: 17 MVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGP 76
M GG G +SYA NS Q +++ +K + A I ++ ++ IADLGCS+GP
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTV----TTRLAIADLGCSSGP 64
Query: 77 NTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKY- 135
N A+ +I+ +E ++ + E ++P E+Q+F ND NDFN +F+S+P+
Sbjct: 65 NALFAVTELIKTVEELRKKMGRE---NSP---EYQIFLNDLPGNDFNAIFRSLPIENDVD 118
Query: 136 ---FATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHI-LCSGF 191
F GVPGSF+GRLFP ++LH H+S +L WLS++P I + N+G+I + +
Sbjct: 119 GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMANTC 172
Query: 192 EKEVAEAYSAQFKNDIESFLNARAQELVXXXXXXXXXXXIRDGIPMFSTPEGTNFDYLGS 251
+ V AY QF+ D FL RAQE+V R ST + L
Sbjct: 173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG-RRSEDRASTECCLIWQLLAM 231
Query: 252 CLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFTHPLVHMVYSA 311
L + + GLI EEK+D FN+P Y P E+ I + +F I+ H+ S
Sbjct: 232 ALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLID----------HIEASE 281
Query: 312 EFWASLSRAAFGG--------------------LVGQHFGYQFVDRIFNYYSTKLAENMS 351
+W+S ++ GG L+ HFG ++ +F+ Y + E MS
Sbjct: 282 IYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 175/356 (49%), Gaps = 33/356 (9%)
Query: 13 EAYPMVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGC 72
E M GG+G SYAKNS Y + ++ K ++ +R+ L ++ + + K+ADLGC
Sbjct: 5 EVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELL--RANLPNINKCIKVADLGC 62
Query: 73 STGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP-- 130
++GPNT + +++I+++I+ + + E E Q+F ND NDFN++FK +P
Sbjct: 63 ASGPNTLLTVRDIVQSIDKVGQEKKNELERPT-----IQIFLNDLFPNDFNSVFKLLPSF 117
Query: 131 ---LSKK-------YFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPA 180
L K+ +PGSF+ RLFPE S+H H+ L WLS++P +
Sbjct: 118 YRKLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIG 177
Query: 181 WNRGHILCSGFEK-EVAEAYSAQFKNDIESFLNARAQELVXXXXXXXXXXXIRDGIPMFS 239
N+G I S + V +AY QF D +FL ++EL I G+ + +
Sbjct: 178 TNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELF--SHGRMLLTCICKGVELDA 235
Query: 240 TPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299
D L + DL G + EEK+DSFN+P+Y P E+ ++ +F I + T
Sbjct: 236 R---NAIDLLEMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLET 292
Query: 300 FTHPLVHMVYS-------AEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLAE 348
F L +S AE+ AS RA + ++ HFG + IF+ ++ A+
Sbjct: 293 FK-VLYDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAK 347
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 112/365 (30%), Positives = 172/365 (47%), Gaps = 43/365 (11%)
Query: 17 MVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLD--LKSLRLDTSST---FKIADLG 71
M GG G SYA NS+ Q M A + L+ L+++ L++S++ F DLG
Sbjct: 9 MKGGKGQDSYANNSLAQ--------AMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 72 CSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL 131
CS+G NT + I++ I K D D P EF FF+D +NDFNTLF+ +P
Sbjct: 61 CSSGANTVHIIDFIVKHIS--KRFDAAGI--DPP---EFTAFFSDLPSNDFNTLFQLLPP 113
Query: 132 ---------------SKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNS 176
++ YF GVPGSF+ RLFP ++ H++ +L WLS++P+ +T+
Sbjct: 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDR 173
Query: 177 NSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVXXXXXXXXXXXIRDGIP 236
S A+NRG + G ++ AY QF+ D+ FL ARA E+ P
Sbjct: 174 RSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDP 233
Query: 237 MFSTPEGTNF-DYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIE 295
G F + DL GL+A EK D FN+P+Y P L + + N +F+I+
Sbjct: 234 TDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAID 293
Query: 296 IMNTFT--HPLV-----HMVYSAEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLAE 348
+ + PLV +AS R+ G LV H G + +++F+ ++
Sbjct: 294 KLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATS 353
Query: 349 NMSSI 353
+ +
Sbjct: 354 HAKDV 358
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/373 (29%), Positives = 176/373 (47%), Gaps = 49/373 (13%)
Query: 13 EAYPMVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGC 72
E M GG+G SYAKNS Y ++ K ++ I++ L ++ + + FK+ DLGC
Sbjct: 5 EVLHMNGGEGDTSYAKNSSYNLFLIR-VKPVLEQCIQELL--RANLPNINKCFKVGDLGC 61
Query: 73 STGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP-- 130
++GPNTF +++I+++I+ + + E E Q+F ND NDFN++FK +P
Sbjct: 62 ASGPNTFSTVRDIVQSIDKVGQEKKNELERPT-----IQIFLNDLFQNDFNSVFKLLPSF 116
Query: 131 ---LSKK-------YFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPA 180
L K+ +PGSF+ RLFPE S+H H+ L WLS++P + +
Sbjct: 117 YRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS 176
Query: 181 WNRGHILCSGFEK-EVAEAYSAQFKNDIESFLNARAQELVXXXXXXXXXXXIRDGIPMFS 239
N+G I S + + +AY QF D +FL ++EL+ D F
Sbjct: 177 VNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDE---FD 233
Query: 240 TPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299
P + D L + DL G + EEK+DSFNVP+Y P E+ ++ +F I + T
Sbjct: 234 HP--NSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291
Query: 300 FTHPL-------------VHMVYS------AEFWASLSRAAFGGLVGQHFGYQFVDRIFN 340
F P H S A AS+ R+ + ++ HFG + I
Sbjct: 292 FNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFG----EAILP 347
Query: 341 YYSTKLAENMSSI 353
S ++A+N + +
Sbjct: 348 DLSHRIAKNAAKV 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,158,153
Number of Sequences: 62578
Number of extensions: 454917
Number of successful extensions: 882
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 5
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)