Query 017439
Match_columns 371
No_of_seqs 141 out of 545
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017439.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017439hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 3E-101 6E-106 764.1 36.9 353 4-369 7-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 4.8E-93 1.1E-97 700.0 28.4 316 44-371 1-334 (334)
3 PRK14103 trans-aconitate 2-met 99.5 3.8E-12 8.2E-17 120.8 19.2 224 24-350 5-232 (255)
4 PRK01683 trans-aconitate 2-met 99.5 8.1E-12 1.8E-16 118.4 20.9 246 24-371 7-257 (258)
5 TIGR02072 BioC biotin biosynth 99.3 8.2E-11 1.8E-15 108.7 15.7 217 23-347 6-223 (240)
6 PRK10258 biotin biosynthesis p 99.2 7E-10 1.5E-14 104.8 16.1 208 24-342 18-230 (251)
7 COG4106 Tam Trans-aconitate me 98.9 8.4E-08 1.8E-12 88.7 15.4 206 61-352 28-236 (257)
8 PLN02244 tocopherol O-methyltr 98.8 2.4E-07 5.2E-12 92.0 18.9 159 62-300 117-279 (340)
9 PTZ00098 phosphoethanolamine N 98.8 2E-07 4.3E-12 89.3 17.6 194 63-347 52-246 (263)
10 PLN02233 ubiquinone biosynthes 98.8 1.3E-07 2.9E-12 90.4 14.8 164 63-299 73-248 (261)
11 PF13489 Methyltransf_23: Meth 98.8 1.5E-08 3.3E-13 87.8 6.9 138 62-296 21-160 (161)
12 PLN02336 phosphoethanolamine N 98.8 4.4E-07 9.5E-12 93.7 18.5 191 63-348 266-459 (475)
13 PRK15068 tRNA mo(5)U34 methylt 98.8 4.1E-08 8.9E-13 96.8 10.4 148 64-300 123-275 (322)
14 TIGR00740 methyltransferase, p 98.7 1.6E-07 3.5E-12 88.2 12.7 159 64-293 54-221 (239)
15 TIGR02752 MenG_heptapren 2-hep 98.7 5.2E-08 1.1E-12 90.6 9.3 171 64-300 46-219 (231)
16 PRK08317 hypothetical protein; 98.7 2.1E-06 4.5E-11 79.1 19.4 218 63-371 19-240 (241)
17 TIGR00452 methyltransferase, p 98.6 5.2E-07 1.1E-11 88.8 14.4 149 63-300 121-274 (314)
18 PRK11036 putative S-adenosyl-L 98.6 3.7E-07 8.1E-12 86.7 12.3 158 63-300 44-208 (255)
19 PRK11207 tellurite resistance 98.6 7E-07 1.5E-11 81.8 12.8 77 151-299 93-170 (197)
20 PRK11705 cyclopropane fatty ac 98.6 7.5E-06 1.6E-10 82.7 20.7 145 64-300 168-313 (383)
21 PRK06202 hypothetical protein; 98.5 3.7E-06 8E-11 78.6 14.9 165 62-302 59-225 (232)
22 PLN02396 hexaprenyldihydroxybe 98.5 4.6E-07 9.9E-12 89.5 9.0 154 63-300 131-290 (322)
23 PRK15451 tRNA cmo(5)U34 methyl 98.5 1.8E-06 3.9E-11 81.8 12.6 160 63-293 56-224 (247)
24 TIGR00477 tehB tellurite resis 98.5 3.2E-06 6.9E-11 77.4 13.9 136 64-299 31-169 (195)
25 PF08241 Methyltransf_11: Meth 98.5 5E-07 1.1E-11 71.0 7.1 95 68-226 1-95 (95)
26 COG2226 UbiE Methylase involve 98.4 4.6E-07 9.9E-12 85.7 7.0 166 63-298 51-223 (238)
27 PRK12335 tellurite resistance 98.4 2.7E-06 5.9E-11 82.4 12.3 77 151-299 182-259 (287)
28 smart00828 PKS_MT Methyltransf 98.4 1.9E-06 4.1E-11 79.7 10.7 81 151-300 65-145 (224)
29 PF01209 Ubie_methyltran: ubiE 98.4 9E-07 2E-11 83.5 8.3 167 62-299 46-220 (233)
30 PRK00216 ubiE ubiquinone/menaq 98.4 2E-06 4.2E-11 79.6 10.2 164 64-301 52-227 (239)
31 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 7.1E-06 1.5E-10 75.0 12.4 166 63-301 39-212 (223)
32 PF02353 CMAS: Mycolic acid cy 98.3 9.4E-05 2E-09 71.5 20.1 91 205-326 143-234 (273)
33 PLN02490 MPBQ/MSBQ methyltrans 98.3 3.6E-06 7.9E-11 83.7 10.5 146 63-301 113-258 (340)
34 PF03848 TehB: Tellurite resis 98.2 1.2E-05 2.6E-10 73.8 11.6 129 63-300 30-170 (192)
35 PF12847 Methyltransf_18: Meth 98.2 8.1E-06 1.8E-10 66.8 9.1 95 64-228 2-111 (112)
36 KOG2940 Predicted methyltransf 98.2 3.4E-06 7.4E-11 78.8 6.9 144 63-298 72-226 (325)
37 PRK11873 arsM arsenite S-adeno 98.2 1.8E-05 3.9E-10 75.7 11.6 151 63-299 77-230 (272)
38 PF08242 Methyltransf_12: Meth 98.2 5.3E-06 1.1E-10 66.8 6.8 96 68-224 1-99 (99)
39 PF13847 Methyltransf_31: Meth 98.1 9.2E-06 2E-10 70.8 6.8 107 63-230 3-112 (152)
40 TIGR01983 UbiG ubiquinone bios 98.0 4.6E-05 9.9E-10 70.3 10.9 95 151-300 110-204 (224)
41 TIGR02021 BchM-ChlM magnesium 98.0 0.00017 3.7E-09 66.7 14.3 31 271-302 179-209 (219)
42 PRK00121 trmB tRNA (guanine-N( 98.0 4.1E-05 8.8E-10 70.5 10.0 161 31-263 13-176 (202)
43 PRK11088 rrmA 23S rRNA methylt 98.0 0.00013 2.9E-09 69.9 13.8 76 63-162 85-160 (272)
44 COG2230 Cfa Cyclopropane fatty 98.0 0.0011 2.4E-08 64.3 19.6 71 205-300 153-224 (283)
45 PRK06922 hypothetical protein; 98.0 1.8E-05 3.8E-10 84.3 7.7 116 64-228 419-537 (677)
46 smart00138 MeTrc Methyltransfe 98.0 6.1E-05 1.3E-09 72.4 10.7 43 149-227 199-241 (264)
47 TIGR02081 metW methionine bios 97.9 3.4E-05 7.4E-10 70.2 7.9 27 274-301 143-169 (194)
48 TIGR02716 C20_methyl_CrtF C-20 97.9 0.00036 7.8E-09 68.0 15.1 151 62-295 148-302 (306)
49 PRK07580 Mg-protoporphyrin IX 97.9 0.00074 1.6E-08 62.4 16.4 32 272-304 188-219 (230)
50 KOG3010 Methyltransferase [Gen 97.8 0.00066 1.4E-08 64.1 15.0 102 66-234 36-142 (261)
51 PRK05134 bifunctional 3-demeth 97.8 0.00017 3.6E-09 67.2 11.2 96 150-300 111-206 (233)
52 PRK11188 rrmJ 23S rRNA methylt 97.8 0.00026 5.6E-09 65.7 12.1 109 64-231 52-168 (209)
53 TIGR00138 gidB 16S rRNA methyl 97.8 0.00013 2.9E-09 66.1 9.4 128 64-273 43-173 (181)
54 PF05401 NodS: Nodulation prot 97.8 0.00013 2.8E-09 67.0 8.7 95 61-229 41-147 (201)
55 KOG1270 Methyltransferases [Co 97.8 4.6E-05 1E-09 72.6 6.0 77 205-298 172-248 (282)
56 KOG1541 Predicted protein carb 97.8 0.00013 2.8E-09 68.0 8.8 58 148-232 107-164 (270)
57 PLN02336 phosphoethanolamine N 97.7 0.00011 2.5E-09 75.8 9.2 102 64-227 38-141 (475)
58 KOG2361 Predicted methyltransf 97.7 0.00022 4.7E-09 67.3 9.6 195 26-300 31-238 (264)
59 KOG1540 Ubiquinone biosynthesi 97.7 0.0001 2.3E-09 70.0 7.0 174 61-299 98-282 (296)
60 PF08003 Methyltransf_9: Prote 97.7 0.00027 5.9E-09 68.9 9.8 144 63-294 115-262 (315)
61 TIGR03438 probable methyltrans 97.6 0.00024 5.2E-09 69.4 9.0 113 64-233 64-182 (301)
62 PF13649 Methyltransf_25: Meth 97.6 7.8E-05 1.7E-09 60.4 4.7 98 67-222 1-101 (101)
63 PRK05785 hypothetical protein; 97.5 0.00071 1.5E-08 63.5 10.8 75 64-169 52-126 (226)
64 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.0014 3E-08 61.1 12.3 60 206-301 130-189 (213)
65 TIGR00091 tRNA (guanine-N(7)-) 97.5 0.00034 7.4E-09 63.8 8.1 113 64-228 17-132 (194)
66 PRK13255 thiopurine S-methyltr 97.5 0.003 6.6E-08 59.0 14.5 59 207-301 134-192 (218)
67 TIGR03587 Pse_Me-ase pseudamin 97.5 0.0007 1.5E-08 62.6 9.8 76 63-166 43-118 (204)
68 PF00891 Methyltransf_2: O-met 97.5 0.0025 5.4E-08 59.8 13.5 104 62-234 99-205 (241)
69 PRK15001 SAM-dependent 23S rib 97.5 0.00074 1.6E-08 68.2 10.4 105 65-228 230-340 (378)
70 cd02440 AdoMet_MTases S-adenos 97.4 0.00059 1.3E-08 52.7 7.1 99 66-227 1-103 (107)
71 PRK09489 rsmC 16S ribosomal RN 97.4 0.00033 7.2E-09 69.8 6.8 104 65-228 198-303 (342)
72 TIGR02469 CbiT precorrin-6Y C5 97.4 0.0017 3.6E-08 53.6 9.7 21 209-229 103-123 (124)
73 PRK08287 cobalt-precorrin-6Y C 97.4 0.0013 2.9E-08 59.3 9.6 20 63-82 31-50 (187)
74 PLN02585 magnesium protoporphy 97.3 0.0054 1.2E-07 60.6 14.4 28 274-302 275-302 (315)
75 COG4123 Predicted O-methyltran 97.3 0.001 2.2E-08 63.4 8.9 114 62-228 43-170 (248)
76 PRK00107 gidB 16S rRNA methylt 97.3 0.0014 3.1E-08 59.9 9.6 21 208-228 125-145 (187)
77 PF05148 Methyltransf_8: Hypot 97.3 0.0023 5.1E-08 59.4 10.8 85 62-228 71-158 (219)
78 PHA03411 putative methyltransf 97.3 0.0021 4.5E-08 62.2 10.8 120 64-231 65-186 (279)
79 PRK13942 protein-L-isoaspartat 97.3 0.0015 3.2E-08 60.6 9.5 20 63-82 76-95 (212)
80 PF05175 MTS: Methyltransferas 97.3 0.0014 3E-08 58.5 8.9 108 63-228 31-140 (170)
81 PLN02232 ubiquinone biosynthes 97.3 0.00087 1.9E-08 59.4 7.2 47 149-233 40-86 (160)
82 PRK13944 protein-L-isoaspartat 97.2 0.00086 1.9E-08 61.8 7.0 19 64-82 73-91 (205)
83 PRK00312 pcm protein-L-isoaspa 97.2 0.0025 5.4E-08 58.7 9.4 20 63-82 78-97 (212)
84 TIGR00438 rrmJ cell division p 97.1 0.0028 6E-08 57.3 9.4 25 205-229 123-147 (188)
85 TIGR00537 hemK_rel_arch HemK-r 97.1 0.0034 7.5E-08 56.2 9.7 123 64-231 20-143 (179)
86 PF06080 DUF938: Protein of un 97.1 0.004 8.7E-08 57.7 10.2 178 37-300 7-193 (204)
87 PRK14121 tRNA (guanine-N(7)-)- 97.1 0.0021 4.6E-08 65.1 9.1 110 64-228 123-235 (390)
88 TIGR00080 pimt protein-L-isoas 97.1 0.0013 2.8E-08 60.9 6.9 20 63-82 77-96 (215)
89 PF03291 Pox_MCEL: mRNA cappin 97.1 0.00094 2E-08 66.4 6.2 109 63-230 62-188 (331)
90 PRK04266 fibrillarin; Provisio 97.0 0.01 2.2E-07 55.8 11.9 19 64-82 73-91 (226)
91 PRK14967 putative methyltransf 97.0 0.0027 5.8E-08 59.1 7.7 123 64-231 37-162 (223)
92 TIGR03534 RF_mod_PrmC protein- 96.9 0.0019 4.1E-08 60.4 6.6 125 63-228 87-217 (251)
93 PF13659 Methyltransf_26: Meth 96.9 0.0042 9.2E-08 51.0 7.8 24 206-229 93-116 (117)
94 PF07021 MetW: Methionine bios 96.9 0.0045 9.8E-08 56.8 8.4 94 148-301 70-169 (193)
95 PTZ00146 fibrillarin; Provisio 96.9 0.012 2.7E-07 57.4 11.8 19 64-82 133-151 (293)
96 TIGR03533 L3_gln_methyl protei 96.9 0.0098 2.1E-07 57.7 11.1 24 206-229 229-252 (284)
97 PF05891 Methyltransf_PK: AdoM 96.8 0.003 6.5E-08 59.0 6.6 142 62-300 54-202 (218)
98 PF03141 Methyltransf_29: Puta 96.7 0.0011 2.4E-08 68.4 3.4 22 61-82 115-136 (506)
99 KOG3178 Hydroxyindole-O-methyl 96.6 0.053 1.1E-06 53.9 14.3 199 11-302 131-333 (342)
100 COG2242 CobL Precorrin-6B meth 96.5 0.027 5.7E-07 51.5 10.6 21 62-82 33-53 (187)
101 COG2227 UbiG 2-polyprenyl-3-me 96.5 0.011 2.4E-07 55.9 8.1 72 210-300 143-216 (243)
102 KOG3045 Predicted RNA methylas 96.4 0.0078 1.7E-07 57.6 6.2 25 205-229 241-265 (325)
103 PRK11805 N5-glutamine S-adenos 96.4 0.016 3.4E-07 57.0 8.7 22 208-229 243-264 (307)
104 TIGR01177 conserved hypothetic 96.3 0.05 1.1E-06 53.8 11.7 25 207-231 273-297 (329)
105 TIGR00536 hemK_fam HemK family 96.2 0.022 4.8E-07 55.1 8.9 25 205-229 221-245 (284)
106 PRK10901 16S rRNA methyltransf 96.2 0.056 1.2E-06 55.4 12.2 126 64-231 245-375 (427)
107 PRK09328 N5-glutamine S-adenos 96.2 0.033 7.2E-07 52.9 9.9 24 205-228 215-238 (275)
108 TIGR00406 prmA ribosomal prote 96.2 0.014 2.9E-07 56.8 7.2 18 65-82 161-178 (288)
109 PRK07402 precorrin-6B methylas 96.1 0.06 1.3E-06 48.9 10.8 25 206-230 120-144 (196)
110 COG2518 Pcm Protein-L-isoaspar 96.1 0.031 6.7E-07 52.0 8.8 49 154-229 122-170 (209)
111 PRK00811 spermidine synthase; 96.0 0.014 3.1E-07 56.5 6.6 109 62-228 75-191 (283)
112 PRK14904 16S rRNA methyltransf 96.0 0.059 1.3E-06 55.6 11.2 124 64-232 251-381 (445)
113 PRK14968 putative methyltransf 96.0 0.055 1.2E-06 48.0 9.7 24 206-229 126-149 (188)
114 PLN03075 nicotianamine synthas 95.9 0.032 6.9E-07 54.7 8.2 104 63-228 123-233 (296)
115 PRK14903 16S rRNA methyltransf 95.8 0.059 1.3E-06 55.4 10.4 127 64-232 238-370 (431)
116 PRK14902 16S rRNA methyltransf 95.7 0.098 2.1E-06 53.9 11.6 126 64-231 251-382 (444)
117 PF02390 Methyltransf_4: Putat 95.7 0.015 3.3E-07 53.4 5.0 111 66-228 20-133 (195)
118 PRK00517 prmA ribosomal protei 95.6 0.024 5.1E-07 53.8 5.9 19 64-82 120-138 (250)
119 PF01135 PCMT: Protein-L-isoas 95.6 0.035 7.7E-07 51.6 6.9 19 64-82 73-91 (209)
120 TIGR00563 rsmB ribosomal RNA s 95.5 0.1 2.3E-06 53.4 10.6 128 64-232 239-372 (426)
121 PRK14901 16S rRNA methyltransf 95.5 0.16 3.5E-06 52.2 12.0 27 205-231 361-387 (434)
122 PRK01544 bifunctional N5-gluta 95.3 0.035 7.6E-07 58.3 6.5 127 64-228 139-269 (506)
123 TIGR03704 PrmC_rel_meth putati 95.2 0.13 2.7E-06 49.1 9.6 23 207-229 195-217 (251)
124 PRK14966 unknown domain/N5-glu 95.2 0.066 1.4E-06 54.9 8.0 22 207-228 360-381 (423)
125 PRK03612 spermidine synthase; 95.2 0.074 1.6E-06 56.0 8.6 53 210-275 397-449 (521)
126 PRK00377 cbiT cobalt-precorrin 95.2 0.13 2.9E-06 46.8 9.3 20 63-82 40-59 (198)
127 KOG4300 Predicted methyltransf 94.9 0.097 2.1E-06 48.8 7.4 153 63-302 76-235 (252)
128 TIGR00446 nop2p NOL1/NOP2/sun 94.6 0.37 8.1E-06 46.1 10.9 29 204-232 175-203 (264)
129 COG2813 RsmC 16S RNA G1207 met 94.5 0.13 2.9E-06 50.3 7.6 102 65-230 160-268 (300)
130 PRK13943 protein-L-isoaspartat 94.4 0.075 1.6E-06 52.7 5.9 19 64-82 81-99 (322)
131 TIGR00417 speE spermidine synt 94.3 0.085 1.8E-06 50.7 5.8 19 209-227 167-185 (270)
132 PRK04457 spermidine synthase; 94.2 0.12 2.7E-06 49.5 6.7 24 209-232 158-181 (262)
133 KOG2904 Predicted methyltransf 94.2 0.87 1.9E-05 44.3 12.2 120 65-234 150-291 (328)
134 PLN02366 spermidine synthase 94.2 0.14 3E-06 50.5 7.1 110 62-228 90-206 (308)
135 PRK01544 bifunctional N5-gluta 93.8 0.19 4.1E-06 52.9 7.7 139 30-228 322-462 (506)
136 KOG1331 Predicted methyltransf 93.7 0.071 1.5E-06 51.7 4.1 55 146-235 96-150 (293)
137 KOG1975 mRNA cap methyltransfe 93.6 0.076 1.6E-06 52.5 4.0 64 132-231 172-240 (389)
138 KOG2899 Predicted methyltransf 93.2 0.33 7E-06 46.4 7.4 23 205-227 186-208 (288)
139 PRK10611 chemotaxis methyltran 93.2 0.32 7E-06 47.5 7.6 44 63-120 115-158 (287)
140 PHA03412 putative methyltransf 92.6 0.5 1.1E-05 45.0 7.9 73 64-161 50-122 (241)
141 PRK01581 speE spermidine synth 92.6 0.2 4.3E-06 50.6 5.3 19 209-227 249-267 (374)
142 smart00650 rADc Ribosomal RNA 92.1 0.37 7.9E-06 42.7 6.0 20 64-83 14-33 (169)
143 COG2890 HemK Methylase of poly 91.6 0.3 6.5E-06 47.4 5.3 23 206-228 216-238 (280)
144 PF05724 TPMT: Thiopurine S-me 91.3 5.8 0.00013 37.1 13.4 26 273-300 166-191 (218)
145 PF12147 Methyltransf_20: Puta 91.3 8.3 0.00018 37.9 14.6 60 210-293 231-292 (311)
146 PF01234 NNMT_PNMT_TEMT: NNMT/ 91.0 0.34 7.4E-06 46.5 4.9 83 152-299 157-239 (256)
147 PF01739 CheR: CheR methyltran 91.0 1.2 2.7E-05 40.9 8.4 118 62-228 30-175 (196)
148 COG0220 Predicted S-adenosylme 90.0 1.2 2.6E-05 42.1 7.5 112 65-228 50-164 (227)
149 PRK13256 thiopurine S-methyltr 89.6 8.4 0.00018 36.3 12.9 21 63-83 43-63 (226)
150 PLN02672 methionine S-methyltr 89.2 0.9 1.9E-05 51.9 7.0 24 208-231 258-281 (1082)
151 PF10294 Methyltransf_16: Puta 88.8 0.61 1.3E-05 41.8 4.4 110 62-232 44-160 (173)
152 TIGR03439 methyl_EasF probable 88.4 2.7 5.9E-05 41.7 9.1 119 63-233 76-202 (319)
153 KOG1499 Protein arginine N-met 88.3 1.1 2.4E-05 44.7 6.2 46 145-225 119-164 (346)
154 PRK00274 ksgA 16S ribosomal RN 88.0 0.64 1.4E-05 44.7 4.3 20 64-83 43-62 (272)
155 PF08123 DOT1: Histone methyla 87.4 2.4 5.2E-05 39.3 7.5 24 203-226 133-156 (205)
156 PRK15128 23S rRNA m(5)C1962 me 87.3 11 0.00023 38.6 12.8 26 203-228 314-339 (396)
157 KOG1271 Methyltransferases [Ge 86.7 7.9 0.00017 35.7 10.2 18 66-83 70-87 (227)
158 PLN02781 Probable caffeoyl-CoA 86.6 2.4 5.3E-05 39.9 7.3 21 62-82 67-87 (234)
159 COG1352 CheR Methylase of chem 86.5 9.9 0.00022 36.8 11.5 69 63-144 96-176 (268)
160 PRK11783 rlmL 23S rRNA m(2)G24 85.6 3.8 8.3E-05 44.9 9.1 19 65-83 540-558 (702)
161 PRK13168 rumA 23S rRNA m(5)U19 84.3 3 6.4E-05 43.0 7.2 20 64-83 298-317 (443)
162 PRK03522 rumB 23S rRNA methylu 82.5 3.6 7.7E-05 40.4 6.7 20 64-83 174-193 (315)
163 PTZ00338 dimethyladenosine tra 82.2 1.5 3.2E-05 42.9 3.9 50 64-121 37-98 (294)
164 PF07942 N2227: N2227-like pro 82.0 16 0.00035 35.4 10.8 23 276-299 220-242 (270)
165 PRK11727 23S rRNA mA1618 methy 81.8 3.4 7.4E-05 41.0 6.2 21 62-82 113-133 (321)
166 TIGR00755 ksgA dimethyladenosi 80.7 5.2 0.00011 37.8 6.9 21 63-83 29-49 (253)
167 PRK14896 ksgA 16S ribosomal RN 80.2 4.8 0.0001 38.3 6.5 20 64-83 30-49 (258)
168 PF13679 Methyltransf_32: Meth 79.9 2.6 5.6E-05 36.3 4.2 23 61-83 23-45 (141)
169 PF02384 N6_Mtase: N-6 DNA Met 78.6 4.6 9.9E-05 39.2 5.9 134 62-230 45-185 (311)
170 COG2263 Predicted RNA methylas 78.5 1.2 2.5E-05 41.1 1.6 20 63-82 45-64 (198)
171 COG2264 PrmA Ribosomal protein 77.9 1.1 2.5E-05 43.9 1.5 20 63-82 162-181 (300)
172 TIGR00478 tly hemolysin TlyA f 77.5 2.9 6.2E-05 39.5 4.0 20 63-82 75-94 (228)
173 PF06325 PrmA: Ribosomal prote 76.9 1.4 3E-05 43.2 1.7 18 65-82 163-180 (295)
174 COG0030 KsgA Dimethyladenosine 76.7 12 0.00025 36.2 7.9 52 64-126 31-94 (259)
175 PF05219 DREV: DREV methyltran 76.5 8.2 0.00018 37.3 6.8 21 63-83 94-114 (265)
176 PF06859 Bin3: Bicoid-interact 76.0 2.7 5.8E-05 35.3 2.9 43 154-228 2-44 (110)
177 PRK10909 rsmD 16S rRNA m(2)G96 73.0 4.2 9.1E-05 37.5 3.8 19 65-83 55-73 (199)
178 PLN02823 spermine synthase 72.0 15 0.00032 36.8 7.6 21 62-82 102-122 (336)
179 TIGR00479 rumA 23S rRNA (uraci 69.8 12 0.00026 38.2 6.7 20 64-83 293-312 (431)
180 PF05185 PRMT5: PRMT5 arginine 68.5 2.9 6.2E-05 43.5 1.8 21 63-83 186-206 (448)
181 PRK11933 yebU rRNA (cytosine-C 68.1 30 0.00065 36.2 9.2 126 63-231 113-245 (470)
182 COG0500 SmtA SAM-dependent met 68.1 16 0.00036 28.5 5.9 25 210-234 137-161 (257)
183 PRK04148 hypothetical protein; 67.9 14 0.00031 32.0 5.7 20 63-82 16-36 (134)
184 KOG4589 Cell division protein 67.2 6.3 0.00014 36.5 3.5 21 62-82 68-88 (232)
185 PF01728 FtsJ: FtsJ-like methy 66.4 6.7 0.00014 34.8 3.6 80 62-165 22-103 (181)
186 PF09243 Rsm22: Mitochondrial 63.6 59 0.0013 31.3 9.7 19 61-79 31-49 (274)
187 PF11968 DUF3321: Putative met 62.5 25 0.00054 33.1 6.6 94 62-230 50-151 (219)
188 COG5459 Predicted rRNA methyla 61.8 34 0.00074 34.7 7.7 62 215-289 212-273 (484)
189 COG4976 Predicted methyltransf 61.6 7.6 0.00016 37.1 3.0 65 206-301 203-267 (287)
190 KOG1500 Protein arginine N-met 61.6 6.4 0.00014 39.5 2.6 71 205-277 260-343 (517)
191 COG1189 Predicted rRNA methyla 59.6 10 0.00023 36.1 3.6 22 61-82 77-98 (245)
192 TIGR02085 meth_trns_rumB 23S r 57.9 12 0.00025 37.8 3.9 19 65-83 235-253 (374)
193 PF00398 RrnaAD: Ribosomal RNA 55.8 72 0.0016 30.3 8.8 52 63-125 30-93 (262)
194 TIGR01444 fkbM_fam methyltrans 54.9 16 0.00036 30.6 3.8 17 66-82 1-17 (143)
195 KOG3191 Predicted N6-DNA-methy 54.4 17 0.00036 33.6 3.8 39 40-86 28-66 (209)
196 TIGR00095 RNA methyltransferas 52.2 8.8 0.00019 34.9 1.8 20 64-83 50-69 (189)
197 KOG2798 Putative trehalase [Ca 52.0 2E+02 0.0044 28.9 11.1 68 205-302 273-340 (369)
198 PRK05031 tRNA (uracil-5-)-meth 51.8 38 0.00082 34.0 6.4 19 65-83 208-226 (362)
199 TIGR02143 trmA_only tRNA (urac 49.1 37 0.0008 34.0 5.8 18 66-83 200-217 (353)
200 KOG3115 Methyltransferase-like 47.0 9.5 0.00021 35.8 1.1 19 63-81 60-78 (249)
201 COG5124 Protein predicted to b 45.5 16 0.00034 33.3 2.2 37 243-279 39-75 (209)
202 PF03962 Mnd1: Mnd1 family; I 45.3 15 0.00033 33.6 2.2 38 243-280 26-63 (188)
203 PF07757 AdoMet_MTase: Predict 43.7 11 0.00025 31.6 1.0 21 62-82 57-77 (112)
204 PRK11524 putative methyltransf 41.5 34 0.00073 33.0 4.1 22 207-228 59-80 (284)
205 PRK00050 16S rRNA m(4)C1402 me 41.5 54 0.0012 32.2 5.5 27 205-231 213-239 (296)
206 COG4798 Predicted methyltransf 40.4 97 0.0021 29.0 6.6 19 64-82 49-67 (238)
207 KOG3433 Protein involved in me 39.9 22 0.00048 32.5 2.3 38 243-280 38-75 (203)
208 PF09445 Methyltransf_15: RNA 33.7 23 0.0005 31.7 1.4 18 66-83 2-19 (163)
209 KOG3420 Predicted RNA methylas 32.8 14 0.0003 32.9 -0.1 19 63-81 48-66 (185)
210 TIGR00730 conserved hypothetic 32.3 65 0.0014 29.1 4.1 41 245-288 137-177 (178)
211 PF02375 JmjN: jmjN domain; I 32.1 17 0.00036 24.0 0.2 14 273-286 1-14 (34)
212 cd08788 CARD_NOD2_2_CARD15 Cas 31.5 52 0.0011 26.1 2.9 41 246-287 13-53 (81)
213 PF09851 SHOCT: Short C-termin 31.0 42 0.0009 21.4 1.9 17 252-268 7-23 (31)
214 PF02268 TFIIA_gamma_N: Transc 31.0 53 0.0012 23.6 2.6 21 245-265 11-31 (49)
215 PF09597 IGR: IGR protein moti 30.7 35 0.00076 25.3 1.7 27 197-223 13-39 (57)
216 PRK11760 putative 23S rRNA C24 30.3 31 0.00068 34.7 1.9 21 62-82 210-230 (357)
217 TIGR02987 met_A_Alw26 type II 29.3 37 0.00081 35.7 2.4 22 63-84 31-52 (524)
218 KOG0820 Ribosomal RNA adenine 29.2 1.8E+02 0.004 28.6 6.8 53 61-121 56-120 (315)
219 PF14904 FAM86: Family of unkn 28.1 47 0.001 27.4 2.2 31 315-345 67-99 (100)
220 COG0293 FtsJ 23S rRNA methylas 28.1 87 0.0019 29.2 4.3 52 24-83 14-65 (205)
221 smart00400 ZnF_CHCC zinc finge 27.8 51 0.0011 23.6 2.2 21 65-85 22-42 (55)
222 PRK04338 N(2),N(2)-dimethylgua 26.7 60 0.0013 33.0 3.2 49 20-82 28-76 (382)
223 KOG1122 tRNA and rRNA cytosine 25.4 5.9E+02 0.013 26.6 9.9 134 61-232 239-375 (460)
224 PF10357 Kin17_mid: Domain of 25.2 51 0.0011 28.4 2.0 26 192-217 10-35 (127)
225 COG2519 GCD14 tRNA(1-methylade 24.9 1.6E+02 0.0035 28.4 5.6 42 210-266 177-218 (256)
226 PF02636 Methyltransf_28: Puta 24.8 81 0.0018 29.7 3.6 24 62-85 17-40 (252)
227 PF03641 Lysine_decarbox: Poss 24.6 93 0.002 26.5 3.6 39 245-286 95-133 (133)
228 PF13260 DUF4051: Protein of u 24.2 1E+02 0.0022 22.1 3.0 27 196-222 22-48 (54)
229 PF02167 Cytochrom_C1: Cytochr 23.2 1.2E+02 0.0025 28.7 4.1 51 140-215 133-183 (219)
230 KOG1661 Protein-L-isoaspartate 22.7 69 0.0015 30.3 2.5 29 186-229 166-194 (237)
231 PHA00457 inhibitor of host bac 21.9 84 0.0018 23.5 2.3 31 268-298 25-58 (63)
232 COG2231 Uncharacterized protei 21.8 1.4E+02 0.003 28.0 4.3 39 245-290 44-82 (215)
233 PF03514 GRAS: GRAS domain fam 21.7 3.1E+02 0.0067 27.7 7.2 46 61-121 108-153 (374)
234 smart00545 JmjN Small domain f 21.6 49 0.0011 22.9 1.0 16 272-287 2-17 (42)
235 PRK00050 16S rRNA m(4)C1402 me 21.2 69 0.0015 31.5 2.3 20 64-83 20-39 (296)
236 PF08784 RPA_C: Replication pr 21.0 45 0.00097 26.8 0.9 17 246-262 79-95 (102)
237 COG0275 Predicted S-adenosylme 20.4 98 0.0021 30.7 3.2 35 197-231 213-247 (314)
238 COG4076 Predicted RNA methylas 20.2 1.6E+02 0.0034 27.6 4.2 54 65-122 34-94 (252)
239 COG3963 Phospholipid N-methylt 20.0 1.3E+02 0.0028 27.6 3.6 21 62-82 47-67 (194)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=2.9e-101 Score=764.10 Aligned_cols=353 Identities=32% Similarity=0.519 Sum_probs=319.1
Q ss_pred ccchhcc-ccceecccCCCCCCchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHH
Q 017439 4 NTFVSNI-SPEAYPMVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 4 ~~~~~~~-~~~~~~M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
|.+++|| ++++|||+||+|++||++||.+|++++..++|+|++||+++.. ... +.++++|||||||+|+||+.++
T Consensus 7 ~~~~~~m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~-~~~---p~~~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 7 NVVVSNMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHL-NSS---PEVPFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ccceecceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccC---CCcceeEEEecCCCCccHHHHH
Confidence 4578999 9999999999999999999999999999999999999988531 211 2368999999999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC----------------cceeeeccCCCccc
Q 017439 83 QNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS----------------KKYFATGVPGSFHG 146 (371)
Q Consensus 83 ~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~----------------~~~f~~gvpgSFy~ 146 (371)
+.||++|++ +|++.+ .+ .| ||||||||||+||||+||++||+. ++||++|||||||+
T Consensus 83 s~iI~~i~~-~~~~~~-~~--~p---e~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~ 155 (386)
T PLN02668 83 DVIVKHMSK-RYESAG-LD--PP---EFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYR 155 (386)
T ss_pred HHHHHHHHH-HhhhcC-CC--CC---cceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccc
Confidence 999999999 988643 33 67 999999999999999999999752 24999999999999
Q ss_pred ccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEE
Q 017439 147 RLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLL 226 (371)
Q Consensus 147 rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 226 (371)
||||++|+||+||++|||||||+|+++.|+.+++||||+||+++++|+|++||++||++||..||++||+||+|||+||+
T Consensus 156 RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl 235 (386)
T PLN02668 156 RLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFL 235 (386)
T ss_pred cccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCCCCCCCCCCCcchHHH-HHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEeecCcc
Q 017439 227 LTPTIRDGIPMFSTPEGTNFDY-LGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFTHPLV 305 (371)
Q Consensus 227 ~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~p~~ 305 (371)
+++||++.++..+...+.+|+. +.++|+|||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|.++..|+
T Consensus 236 ~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~ 315 (386)
T PLN02668 236 VCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSP 315 (386)
T ss_pred EEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCc
Confidence 9999988766555435567877 999999999999999999999999999999999999999999999999999976554
Q ss_pred c---cc----ccHHHHHHhHHHhhhhhhhhhhcHHHHHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEE
Q 017439 306 H---MV----YSAEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLAENMSSICDGKTQDKIELFVLLR 369 (371)
Q Consensus 306 ~---~~----~~~~~~a~~iRa~~~~~l~~h~ge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 369 (371)
. .+ ..+..+++++||++||++.+|||++|+|+||+||++++++++++. .++.+.+.++++|.
T Consensus 316 ~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~--~~~~~~~~~~~sL~ 384 (386)
T PLN02668 316 LVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKEL--LEKLQFFHIVASLS 384 (386)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh--cccCceEEEEEEEe
Confidence 2 11 235679999999999999999999999999999999999999874 35677888888885
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=4.8e-93 Score=700.02 Aligned_cols=316 Identities=43% Similarity=0.730 Sum_probs=262.2
Q ss_pred HHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchh
Q 017439 44 IAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFN 123 (371)
Q Consensus 44 l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn 123 (371)
+++||++++.... .+++++|||||||+|+||+.+++.||++|++ +|+..+..+ .| +|||||||||+||||
T Consensus 1 ~~~ai~~~~~~~~----~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~-~~~~~~~~~--~~---e~~v~~nDlP~NDFn 70 (334)
T PF03492_consen 1 LEEAIKELYNSSN----NPKPFRIADLGCSSGPNSLLAVSNIIDAIRE-RCRSSNNQP--PP---EFQVFFNDLPSNDFN 70 (334)
T ss_dssp -HHHHHHHHHSTT----TTTEEEEEEES--SSHHHHHHHHHHHHHHHH-HHHCTT-SS-------EEEEEEEE-TTS-HH
T ss_pred ChHHHHHHHhcCC----CCCceEEEecCCCCCccHHHHHHHHHHHHHH-HhhhhcCCC--CC---eEEEEeCCCCCccHH
Confidence 4788888664232 6789999999999999999999999999999 987643223 67 999999999999999
Q ss_pred hhhhcCCCC-------cceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeec-CCCHHH
Q 017439 124 TLFKSVPLS-------KKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCS-GFEKEV 195 (371)
Q Consensus 124 ~lF~~l~~~-------~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~-~~~~~~ 195 (371)
+||++||+. ++||++|||||||+||||++|+||+||++||||||++|+++.+..+++||||+||++ +++++|
T Consensus 71 ~lF~~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v 150 (334)
T PF03492_consen 71 TLFKSLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEV 150 (334)
T ss_dssp HHHHCHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHH
T ss_pred HHHHhChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHH
Confidence 999999875 799999999999999999999999999999999999999999999999999999998 678899
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccc
Q 017439 196 AEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMY 275 (371)
Q Consensus 196 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y 275 (371)
.+||++||++||.+||++||+||+|||+|||+++||++.++.. .+.+.+|++|+++|+|||.||+|++|++|+||+|+|
T Consensus 151 ~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y 229 (334)
T PF03492_consen 151 AKAYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSS-TGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIY 229 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTS-TTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB
T ss_pred HHHHHHHHHHHHHHHHHHhhheeccCcEEEEEEeecccccccc-CCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCcc
Confidence 9999999999999999999999999999999999999865533 345679999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhcCCceEEEEEEEeecCcccc----------cccHHHHHHhHHHhhhhhhhhhhcHHHHHHHHHHHHHH
Q 017439 276 YPFLGELMGHIKRNKNFSIEIMNTFTHPLVHM----------VYSAEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTK 345 (371)
Q Consensus 276 ~ps~eE~~~~i~~~g~F~I~~~e~~~~p~~~~----------~~~~~~~a~~iRa~~~~~l~~h~ge~i~delf~r~~~~ 345 (371)
+||.+|++++|+++|+|+|+++|.+..+++.. ..+++.+++++||++||++++|||++|+|+||+||+++
T Consensus 230 ~ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~ 309 (334)
T PF03492_consen 230 FPSPEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKK 309 (334)
T ss_dssp ---HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 99999999999999999999999996433221 23688999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCCCCeEEEEEEEEeC
Q 017439 346 LAENMSSICDGKTQDKIELFVLLRRN 371 (371)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~L~r~ 371 (371)
+++++++. +.+.++.++++++|+||
T Consensus 310 v~~~~~~~-~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 310 VAEHLEKE-KSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHT-HTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHh-hccCCCcEEEEEEEeeC
Confidence 99999875 33557899999999998
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=3.8e-12 Score=120.82 Aligned_cols=224 Identities=16% Similarity=0.136 Sum_probs=138.0
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCC
Q 017439 24 HSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHD 103 (371)
Q Consensus 24 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~ 103 (371)
..|.+++..|.+....+++. + . .....+|+|+|||+|..+..+. + ++
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~--------l--~-----~~~~~~vLDlGcG~G~~~~~l~--------~-~~--------- 51 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLAR--------V--G-----AERARRVVDLGCGPGNLTRYLA--------R-RW--------- 51 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHh--------C--C-----CCCCCEEEEEcCCCCHHHHHHH--------H-HC---------
Confidence 45999999998766532222 2 1 2345799999999998876554 3 21
Q ss_pred CCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCC
Q 017439 104 NPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNR 183 (371)
Q Consensus 104 ~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nk 183 (371)
| ..+|+..|+-.+- -...+. ..--|..+. ...+.|++++|+++|+.++||+...+
T Consensus 52 -p---~~~v~gvD~s~~~-~~~a~~---~~~~~~~~d----~~~~~~~~~fD~v~~~~~l~~~~d~~------------- 106 (255)
T PRK14103 52 -P---GAVIEALDSSPEM-VAAARE---RGVDARTGD----VRDWKPKPDTDVVVSNAALQWVPEHA------------- 106 (255)
T ss_pred -C---CCEEEEEECCHHH-HHHHHh---cCCcEEEcC----hhhCCCCCCceEEEEehhhhhCCCHH-------------
Confidence 2 2357777764322 222221 112244443 34566788999999999999964311
Q ss_pred CceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q 017439 184 GHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIA 263 (371)
Q Consensus 184 g~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 263 (371)
.+|+.-++-|+|||++++++.+..+. + .+.. +..+..++-..
T Consensus 107 -------------------------~~l~~~~~~LkpgG~l~~~~~~~~~~-~--------~~~~----~~~~~~~~~w~ 148 (255)
T PRK14103 107 -------------------------DLLVRWVDELAPGSWIAVQVPGNFDA-P--------SHAA----VRALARREPWA 148 (255)
T ss_pred -------------------------HHHHHHHHhCCCCcEEEEEcCCCcCC-h--------hHHH----HHHHhccCchh
Confidence 24566667899999999987653211 1 1122 22222211111
Q ss_pred hhhhc--ccCcccccCCHHHHHHHhhcCCceEEEEEEEe-ecCcccccccHHHHHHhHHH-hhhhhhhhhhcHHHHHHHH
Q 017439 264 EEKVD--SFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF-THPLVHMVYSAEFWASLSRA-AFGGLVGQHFGYQFVDRIF 339 (371)
Q Consensus 264 ~e~~d--~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~-~~p~~~~~~~~~~~a~~iRa-~~~~~l~~h~ge~i~delf 339 (371)
. .+. .+..+....+.+++.+++++.| |++...+.. ..+ ....+.+..|+++ .+.+++. .++++..+++-
T Consensus 149 ~-~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ 221 (255)
T PRK14103 149 K-LLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVHQ----LTGEDPVLDWITGTALRPVRE-RLSDDSWEQFR 221 (255)
T ss_pred H-HhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeeee----CCCchhhhhhhhccchhhhhh-hCCHHHHHHHH
Confidence 0 011 1233456789999999999988 987665543 122 1234567788886 3566664 78888889999
Q ss_pred HHHHHHHHHhh
Q 017439 340 NYYSTKLAENM 350 (371)
Q Consensus 340 ~r~~~~~~~~~ 350 (371)
+.+.+.+.+.+
T Consensus 222 ~~~~~~l~~~~ 232 (255)
T PRK14103 222 AELIPLLREAY 232 (255)
T ss_pred HHHHHHHHHHC
Confidence 99999988775
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=8.1e-12 Score=118.36 Aligned_cols=246 Identities=18% Similarity=0.233 Sum_probs=147.5
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCC
Q 017439 24 HSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHD 103 (371)
Q Consensus 24 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~ 103 (371)
..|.+++..|.+.....+.. +. .....+|+|+|||+|..+..+. + ++
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~--------~~-------~~~~~~vLDiGcG~G~~~~~la--------~-~~--------- 53 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLAR--------VP-------LENPRYVVDLGCGPGNSTELLV--------E-RW--------- 53 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhh--------CC-------CcCCCEEEEEcccCCHHHHHHH--------H-HC---------
Confidence 35999998887665432221 21 2345799999999999987666 2 21
Q ss_pred CCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCC
Q 017439 104 NPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNR 183 (371)
Q Consensus 104 ~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nk 183 (371)
| .-+|+..|+...-....=+.++ +--|..+.. ..+.|++++|+++|+.++||+.+.
T Consensus 54 -~---~~~v~gvD~s~~~i~~a~~~~~--~~~~~~~d~----~~~~~~~~fD~v~~~~~l~~~~d~-------------- 109 (258)
T PRK01683 54 -P---AARITGIDSSPAMLAEARSRLP--DCQFVEADI----ASWQPPQALDLIFANASLQWLPDH-------------- 109 (258)
T ss_pred -C---CCEEEEEECCHHHHHHHHHhCC--CCeEEECch----hccCCCCCccEEEEccChhhCCCH--------------
Confidence 1 2367788876543222211221 122444442 345677899999999999996431
Q ss_pred CceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q 017439 184 GHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIA 263 (371)
Q Consensus 184 g~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 263 (371)
..+|+.-.+-|+|||.+++++++.... + .+.. ++++.....-.
T Consensus 110 ------------------------~~~l~~~~~~LkpgG~~~~~~~~~~~~-~--------~~~~----~~~~~~~~~w~ 152 (258)
T PRK01683 110 ------------------------LELFPRLVSLLAPGGVLAVQMPDNLDE-P--------SHVL----MREVAENGPWE 152 (258)
T ss_pred ------------------------HHHHHHHHHhcCCCcEEEEECCCCCCC-H--------HHHH----HHHHHccCchH
Confidence 125777778999999999986442211 1 1111 22222211110
Q ss_pred hhhhc-ccCcccccCCHHHHHHHhhcCCceEEEEEEEe-ecCcccccccHHHHHHhHHH-hhhhhhhhhhcHHHHHHHHH
Q 017439 264 EEKVD-SFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF-THPLVHMVYSAEFWASLSRA-AFGGLVGQHFGYQFVDRIFN 340 (371)
Q Consensus 264 ~e~~d-~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~-~~p~~~~~~~~~~~a~~iRa-~~~~~l~~h~ge~i~delf~ 340 (371)
..+. .-..+.+.++.+++...+.+.| +.++..+.. ..+. .+++.+..|+++ .+.+++ ++++++..+++.+
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~f~~ 225 (258)
T PRK01683 153 -QNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTYYHPM----PSAQAIVEWVKGTGLRPFL-DPLTESEQAAFLA 225 (258)
T ss_pred -HHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeeeeeec----CCchhhhhhhhhccHHHHH-hhCCHHHHHHHHH
Confidence 1111 1112446789999999999988 556444432 2222 356778889887 556776 6899999999999
Q ss_pred HHHHHHHHhhh-hhccC-CCCCeEEEEEEEEeC
Q 017439 341 YYSTKLAENMS-SICDG-KTQDKIELFVLLRRN 371 (371)
Q Consensus 341 r~~~~~~~~~~-~~~~~-~~~~~~~~~~~L~r~ 371 (371)
.|.+.+.+... .- +. -...+..++++-+|+
T Consensus 226 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 226 AYLARIAEAYPLQA-DGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHHCCCCC-CCcEEcccceEEEEEEec
Confidence 99999987743 11 11 113445566666653
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=8.2e-11 Score=108.71 Aligned_cols=217 Identities=18% Similarity=0.197 Sum_probs=138.0
Q ss_pred CCchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCC
Q 017439 23 PHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEH 102 (371)
Q Consensus 23 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~ 102 (371)
..+|.+.+..|+.+.....+.+... . ..++.+|+|+|||+|..+..+. + .
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~-------~-----~~~~~~vLDlG~G~G~~~~~l~--------~-~--------- 55 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEK-------G-----IFIPASVLDIGCGTGYLTRALL--------K-R--------- 55 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhh-------c-----cCCCCeEEEECCCccHHHHHHH--------H-h---------
Confidence 3569999999998777665554311 0 1345789999999999877665 2 1
Q ss_pred CCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcC
Q 017439 103 DNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWN 182 (371)
Q Consensus 103 ~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~n 182 (371)
.| ..+++..|...+..+..-..+++ +-.|+.+ ++-...+|++++|+++++.++||+..
T Consensus 56 -~~---~~~~~~~D~~~~~~~~~~~~~~~-~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~~-------------- 113 (240)
T TIGR02072 56 -FP---QAEFIALDISAGMLAQAKTKLSE-NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCDD-------------- 113 (240)
T ss_pred -CC---CCcEEEEeChHHHHHHHHHhcCC-CCeEEec---chhhCCCCCCceeEEEEhhhhhhccC--------------
Confidence 12 33678888776665555444442 2233333 34455578999999999999999643
Q ss_pred CCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCC
Q 017439 183 RGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLI 262 (371)
Q Consensus 183 kg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli 262 (371)
...+|+...+-|+|||.+++..++.+. +..+..++..
T Consensus 114 ------------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~------------~~~~~~~~~~------- 150 (240)
T TIGR02072 114 ------------------------LSQALSELARVLKPGGLLAFSTFGPGT------------LHELRQSFGQ------- 150 (240)
T ss_pred ------------------------HHHHHHHHHHHcCCCcEEEEEeCCccC------------HHHHHHHHHH-------
Confidence 123688888999999999998765432 1222222221
Q ss_pred chhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEeecCcccccccHHHHHHhHHHhhh-hhhhhhhcHHHHHHHHHH
Q 017439 263 AEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFTHPLVHMVYSAEFWASLSRAAFG-GLVGQHFGYQFVDRIFNY 341 (371)
Q Consensus 263 ~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~p~~~~~~~~~~~a~~iRa~~~-~~l~~h~ge~i~delf~r 341 (371)
....+++.+++.+++.+. |+...++....+.. ..+...+..++|..-. ......++.+...++.+.
T Consensus 151 ---------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 217 (240)
T TIGR02072 151 ---------HGLRYLSLDELKALLKNS--FELLTLEEELITLS--FDDPLDVLRHLKKTGANGLSSGRTSRKQLKAFLER 217 (240)
T ss_pred ---------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEEEe--CCCHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHH
Confidence 112367899999999873 87666554322221 2356778888877333 332334677777777777
Q ss_pred HHHHHH
Q 017439 342 YSTKLA 347 (371)
Q Consensus 342 ~~~~~~ 347 (371)
|.+...
T Consensus 218 ~~~~~~ 223 (240)
T TIGR02072 218 YEQEFQ 223 (240)
T ss_pred HHHhhc
Confidence 766663
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.18 E-value=7e-10 Score=104.77 Aligned_cols=208 Identities=12% Similarity=0.068 Sum_probs=123.0
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCC
Q 017439 24 HSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHD 103 (371)
Q Consensus 24 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~ 103 (371)
.+|.+++..|+.+...+...+ . ....-+|+|+|||+|.+|..+. + +
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l--------~-------~~~~~~vLDiGcG~G~~~~~l~--------~-~---------- 63 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAML--------P-------QRKFTHVLDAGCGPGWMSRYWR--------E-R---------- 63 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhc--------C-------ccCCCeEEEeeCCCCHHHHHHH--------H-c----------
Confidence 358888888887766544332 1 1234689999999998776543 2 1
Q ss_pred CCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCC
Q 017439 104 NPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNR 183 (371)
Q Consensus 104 ~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nk 183 (371)
..+++..|+-..--...=+..+ ...|+.+. +-.--+|++++|+++|+.++||+...+
T Consensus 64 -----~~~v~~~D~s~~~l~~a~~~~~--~~~~~~~d---~~~~~~~~~~fD~V~s~~~l~~~~d~~------------- 120 (251)
T PRK10258 64 -----GSQVTALDLSPPMLAQARQKDA--ADHYLAGD---IESLPLATATFDLAWSNLAVQWCGNLS------------- 120 (251)
T ss_pred -----CCeEEEEECCHHHHHHHHhhCC--CCCEEEcC---cccCcCCCCcEEEEEECchhhhcCCHH-------------
Confidence 1156777764432211111111 12344443 222236888999999999999954422
Q ss_pred CceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q 017439 184 GHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIA 263 (371)
Q Consensus 184 g~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 263 (371)
.+|+.-.+-|+|||.++++.++.++- .-+.++|..+-..
T Consensus 121 -------------------------~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~---- 159 (251)
T PRK10258 121 -------------------------TALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDER---- 159 (251)
T ss_pred -------------------------HHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccC----
Confidence 25666778999999999999876532 3345555532111
Q ss_pred hhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEeecCcccccccHHHHHHhHHHhhhhhh-----hhhhcHHHHHHH
Q 017439 264 EEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFTHPLVHMVYSAEFWASLSRAAFGGLV-----GQHFGYQFVDRI 338 (371)
Q Consensus 264 ~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~p~~~~~~~~~~~a~~iRa~~~~~l-----~~h~ge~i~del 338 (371)
....-+++.+|+.+.+...+ +++ ..+.+... ..++..+...+|..-.... ...++...+.++
T Consensus 160 -------~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~~----f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~ 226 (251)
T PRK10258 160 -------PHANRFLPPDAIEQALNGWR-YQH-HIQPITLW----FDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRL 226 (251)
T ss_pred -------CccccCCCHHHHHHHHHhCC-cee-eeeEEEEE----CCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHH
Confidence 11223678999999998654 543 33333332 2467778888887433222 123556555555
Q ss_pred HHHH
Q 017439 339 FNYY 342 (371)
Q Consensus 339 f~r~ 342 (371)
.+.|
T Consensus 227 ~~~~ 230 (251)
T PRK10258 227 QLAW 230 (251)
T ss_pred HHhc
Confidence 5554
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.87 E-value=8.4e-08 Score=88.67 Aligned_cols=206 Identities=18% Similarity=0.250 Sum_probs=127.8
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeecc
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGV 140 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gv 140 (371)
...+-+|.|||||.|.-|-++. + ++.. -++.--|-..-.-..--..+|. --|.-|.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~--------~-RwP~-------------A~i~GiDsS~~Mla~Aa~rlp~--~~f~~aD 83 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLA--------R-RWPD-------------AVITGIDSSPAMLAKAAQRLPD--ATFEEAD 83 (257)
T ss_pred ccccceeeecCCCCCHHHHHHH--------H-hCCC-------------CeEeeccCCHHHHHHHHHhCCC--Cceeccc
Confidence 4567999999999999998887 4 4421 1344444333222222222221 1233343
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
....-|+...|++||+++||||..-|. .|..-=.+|.|
T Consensus 84 ----l~~w~p~~~~dllfaNAvlqWlpdH~~--------------------------------------ll~rL~~~L~P 121 (257)
T COG4106 84 ----LRTWKPEQPTDLLFANAVLQWLPDHPE--------------------------------------LLPRLVSQLAP 121 (257)
T ss_pred ----HhhcCCCCccchhhhhhhhhhccccHH--------------------------------------HHHHHHHhhCC
Confidence 456679999999999999999555443 23333468999
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCc-ccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNV-PMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~-P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
||.|.+.|++--++ . .+.++ ++.++++- -+.++..+.. ----+|+.-|-+++...+ =+|.--++
T Consensus 122 gg~LAVQmPdN~de--p-------sH~~m----r~~A~~~p-~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T 186 (257)
T COG4106 122 GGVLAVQMPDNLDE--P-------SHRLM----RETADEAP-FAQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHT 186 (257)
T ss_pred CceEEEECCCccCc--h-------hHHHH----HHHHhcCc-hhhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeee
Confidence 99999999875432 1 12332 23333221 1122222111 111467888888887754 45544444
Q ss_pred e-ecCcccccccHHHHHHhHHH-hhhhhhhhhhcHHHHHHHHHHHHHHHHHhhhh
Q 017439 300 F-THPLVHMVYSAEFWASLSRA-AFGGLVGQHFGYQFVDRIFNYYSTKLAENMSS 352 (371)
Q Consensus 300 ~-~~p~~~~~~~~~~~a~~iRa-~~~~~l~~h~ge~i~delf~r~~~~~~~~~~~ 352 (371)
. .++. .+.+.+..|+++ ++.|.+. .++++--..|.++|..++.+++-.
T Consensus 187 ~Y~h~l----~~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aYP~ 236 (257)
T COG4106 187 TYYHQL----PGADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAYPP 236 (257)
T ss_pred eccccC----CCccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhCCC
Confidence 3 3443 356789999997 8888885 688888899999999999776653
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=98.84 E-value=2.4e-07 Score=92.01 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=89.1
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhh---hhhcCCC-Ccceee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNT---LFKSVPL-SKKYFA 137 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~---lF~~l~~-~~~~f~ 137 (371)
...-+|+|+|||+|.++..+.. ++. .+|+--|+-.+.-.. ..+.-.. .+-.|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~---------~~g--------------~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~ 173 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLAR---------KYG--------------ANVKGITLSPVQAARANALAAAQGLSDKVSFQ 173 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHH---------hcC--------------CEEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence 3457899999999999987762 110 134444443332111 1111010 112343
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
.+. ..+--||++++|+++|..++|++.+. ..+|+.-.+-
T Consensus 174 ~~D---~~~~~~~~~~FD~V~s~~~~~h~~d~--------------------------------------~~~l~e~~rv 212 (340)
T PLN02244 174 VAD---ALNQPFEDGQFDLVWSMESGEHMPDK--------------------------------------RKFVQELARV 212 (340)
T ss_pred EcC---cccCCCCCCCccEEEECCchhccCCH--------------------------------------HHHHHHHHHH
Confidence 333 22333688999999999999884321 1356667788
Q ss_pred cccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEE
Q 017439 218 LVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIM 297 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~ 297 (371)
|+|||++++......+..+.... .-..-...+..+.. .+.+|. ..+.+|+.+++++.| |+....
T Consensus 213 LkpGG~lvi~~~~~~~~~~~~~~----l~~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v~~ 276 (340)
T PLN02244 213 AAPGGRIIIVTWCHRDLEPGETS----LKPDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDIKT 276 (340)
T ss_pred cCCCcEEEEEEeccccccccccc----CCHHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCeeEe
Confidence 99999999987654432221100 00111112222211 122332 358999999999987 988776
Q ss_pred EEe
Q 017439 298 NTF 300 (371)
Q Consensus 298 e~~ 300 (371)
+.+
T Consensus 277 ~d~ 279 (340)
T PLN02244 277 EDW 279 (340)
T ss_pred eeC
Confidence 644
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.83 E-value=2e-07 Score=89.32 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=108.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC-CcceeeeccC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL-SKKYFATGVP 141 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~-~~~~f~~gvp 141 (371)
...+|+|+|||+|..+..+. . ++ ..+|+..|+..+--...=+..+. .+-.|..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~-~~--------------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~--- 105 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------E-KY--------------GAHVHGVDICEKMVNIAKLRNSDKNKIEFEA--- 105 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------h-hc--------------CCEEEEEECCHHHHHHHHHHcCcCCceEEEE---
Confidence 45789999999999887665 2 11 12566777654432211111111 1122333
Q ss_pred CCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccC
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPG 221 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 221 (371)
+++...-+|++++|+++|+.++|++ |. +|...+|+.-++-|+||
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~---~~---------------------------------~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHL---SY---------------------------------ADKKKLFEKCYKWLKPN 149 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhC---CH---------------------------------HHHHHHHHHHHHHcCCC
Confidence 3444545789999999998887653 31 24445788888999999
Q ss_pred ceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEee
Q 017439 222 GLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFT 301 (371)
Q Consensus 222 G~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~ 301 (371)
|+++++-....+... .-+.+...+. .. .+..++++++.+++++.| |++...+...
T Consensus 150 G~lvi~d~~~~~~~~--------~~~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~~ 204 (263)
T PTZ00098 150 GILLITDYCADKIEN--------WDEEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDIS 204 (263)
T ss_pred cEEEEEEeccccccC--------cHHHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeCc
Confidence 999998665443211 0111222111 10 123579999999999987 9987776542
Q ss_pred cCcccccccHHHHHHhHHHhhhhhhhhhhcHHHHHHHHHHHHHHHH
Q 017439 302 HPLVHMVYSAEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLA 347 (371)
Q Consensus 302 ~p~~~~~~~~~~~a~~iRa~~~~~l~~h~ge~i~delf~r~~~~~~ 347 (371)
.-|.. .. ..+...+++-- .-+.+.+|++..+.+-.-+.+.+.
T Consensus 205 ~~~~~--~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 205 DYWLE--LL-QVELKKLEEKK-EEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred HHHHH--HH-HHHHHHHHHhH-HHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22210 01 11112222222 222335677766666666655543
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.79 E-value=1.3e-07 Score=90.45 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=90.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC------CCccee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP------LSKKYF 136 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~------~~~~~f 136 (371)
...+|+|+|||+|..+..+. + ++. | .-+|+.-|.-.+--...=+..+ ..+--|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la--------~-~~~---------~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~ 131 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS--------E-KVG---------S---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEW 131 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH--------H-HhC---------C---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEE
Confidence 35799999999999776554 2 221 1 2256666665543222211111 011124
Q ss_pred eeccCCCccccc-CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 137 ATGVPGSFHGRL-FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 137 ~~gvpgSFy~rL-fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
..+. ...+ +|++|+|++++++++||+.+. ..+|+.-+
T Consensus 132 ~~~d----~~~lp~~~~sfD~V~~~~~l~~~~d~--------------------------------------~~~l~ei~ 169 (261)
T PLN02233 132 IEGD----ATDLPFDDCYFDAITMGYGLRNVVDR--------------------------------------LKAMQEMY 169 (261)
T ss_pred EEcc----cccCCCCCCCEeEEEEecccccCCCH--------------------------------------HHHHHHHH
Confidence 4443 2233 688999999999999995431 23677777
Q ss_pred hhcccCceEEEEecCcCCCCCCCCCCCcchHHH-HHHHHHHHH-HcCCCchhhhcccCcc---cccCCHHHHHHHhhcCC
Q 017439 216 QELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDY-LGSCLYDLA-NMGLIAEEKVDSFNVP---MYYPFLGELMGHIKRNK 290 (371)
Q Consensus 216 ~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv-~eGli~~e~~d~fn~P---~Y~ps~eE~~~~i~~~g 290 (371)
+-|+|||++++.-.+.++.... ..+++. +...+.-+. .-|.- +.+. .++ --+++.+|+.+.+++.|
T Consensus 170 rvLkpGG~l~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~y~--~l~~s~~~f~s~~el~~ll~~aG 240 (261)
T PLN02233 170 RVLKPGSRVSILDFNKSTQPFT-----TSMQEWMIDNVVVPVATGYGLA--KEYE--YLKSSINEYLTGEELEKLALEAG 240 (261)
T ss_pred HHcCcCcEEEEEECCCCCcHHH-----HHHHHHHHhhhhhHHHHHhCCh--HHHH--HHHHHHHhcCCHHHHHHHHHHCC
Confidence 8999999999998877553210 001111 111110000 01211 1110 000 11789999999999987
Q ss_pred ceEEEEEEE
Q 017439 291 NFSIEIMNT 299 (371)
Q Consensus 291 ~F~I~~~e~ 299 (371)
|++.....
T Consensus 241 -F~~~~~~~ 248 (261)
T PLN02233 241 -FSSAKHYE 248 (261)
T ss_pred -CCEEEEEE
Confidence 98665443
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.77 E-value=1.5e-08 Score=87.76 Aligned_cols=138 Identities=22% Similarity=0.276 Sum_probs=86.6
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccC
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVP 141 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvp 141 (371)
....+|+|+|||+|.++..+. + .+ .++...|.-...-.. ...++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~------------~~----~~~~g~D~~~~~~~~------------~~~~~ 64 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------K------------RG----FEVTGVDISPQMIEK------------RNVVF 64 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------H------------TT----SEEEEEESSHHHHHH------------TTSEE
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------H------------hC----CEEEEEECCHHHHhh------------hhhhh
Confidence 456799999999997755443 2 11 256666665433222 00111
Q ss_pred CCcc--cccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 142 GSFH--GRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 142 gSFy--~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
..|. ...+|++++|+|+|+.+|||+.. | ..+|+.-.+-|+
T Consensus 65 ~~~~~~~~~~~~~~fD~i~~~~~l~~~~d-~-------------------------------------~~~l~~l~~~Lk 106 (161)
T PF13489_consen 65 DNFDAQDPPFPDGSFDLIICNDVLEHLPD-P-------------------------------------EEFLKELSRLLK 106 (161)
T ss_dssp EEEECHTHHCHSSSEEEEEEESSGGGSSH-H-------------------------------------HHHHHHHHHCEE
T ss_pred hhhhhhhhhccccchhhHhhHHHHhhccc-H-------------------------------------HHHHHHHHHhcC
Confidence 1121 34458899999999999999653 2 236888889999
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEE
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEI 296 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~ 296 (371)
|||++++..+.+... ....+... ....... --..+.+.++++.++++.| |+|+.
T Consensus 107 pgG~l~~~~~~~~~~--------------~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 107 PGGYLVISDPNRDDP--------------SPRSFLKW---RYDRPYG-----GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp EEEEEEEEEEBTTSH--------------HHHHHHHC---CGTCHHT-----TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred CCCEEEEEEcCCcch--------------hhhHHHhc---CCcCccC-----ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 999999999887431 00111110 1111100 1124669999999999988 98864
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.76 E-value=4.4e-07 Score=93.66 Aligned_cols=191 Identities=16% Similarity=0.199 Sum_probs=107.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc-CCC--Ccceeeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS-VPL--SKKYFATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~-l~~--~~~~f~~g 139 (371)
...+|+|+|||+|..++.+. . ++ ..+++..|+...- -...+. ... .+--|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~-~~--------------~~~v~gvDiS~~~-l~~A~~~~~~~~~~v~~~~~ 321 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------E-NF--------------DVHVVGIDLSVNM-ISFALERAIGRKCSVEFEVA 321 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------H-hc--------------CCEEEEEECCHHH-HHHHHHHhhcCCCceEEEEc
Confidence 34699999999998776554 2 11 1246666764322 111111 110 11123333
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
.+....+|++++|+++|..+++|+...+ .+|+.-++-|+
T Consensus 322 ---d~~~~~~~~~~fD~I~s~~~l~h~~d~~--------------------------------------~~l~~~~r~Lk 360 (475)
T PLN02336 322 ---DCTKKTYPDNSFDVIYSRDTILHIQDKP--------------------------------------ALFRSFFKWLK 360 (475)
T ss_pred ---CcccCCCCCCCEEEEEECCcccccCCHH--------------------------------------HHHHHHHHHcC
Confidence 3455557889999999999999964311 25777778999
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
|||++++....+.+..+. ..+...+. ..| ...++.+++.+.+++.| |++...+.
T Consensus 361 pgG~l~i~~~~~~~~~~~---------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d 414 (475)
T PLN02336 361 PGGKVLISDYCRSPGTPS---------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAED 414 (475)
T ss_pred CCeEEEEEEeccCCCCCc---------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeec
Confidence 999999998776543221 11111111 112 23678999999999987 99887765
Q ss_pred eecCcccccccHHHHHHhHHHhhhhhhhhhhcHHHHHHHHHHHHHHHHH
Q 017439 300 FTHPLVHMVYSAEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLAE 348 (371)
Q Consensus 300 ~~~p~~~~~~~~~~~a~~iRa~~~~~l~~h~ge~i~delf~r~~~~~~~ 348 (371)
....+.. .-..+...+++-.+.++ ..+|++..+.+...+...+..
T Consensus 415 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 415 RTDQFLQ---VLQRELDAVEKEKDEFI-SDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred chHHHHH---HHHHHHHHHHhCHHHHH-HhcCHHHHHHHHHhHHHHHhh
Confidence 4322210 00111111121112222 346666666666666655543
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.76 E-value=4.1e-08 Score=96.84 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=92.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC----CCCcc-eeee
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV----PLSKK-YFAT 138 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l----~~~~~-~f~~ 138 (371)
.-+|+|+|||+|..++.+. . . -| . +|+--| |+..+..-++.+ ....+ .|..
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~-~----------g~---~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~~~~ 178 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------G-A----------GA---K-LVVGID-PSQLFLCQFEAVRKLLGNDQRAHLLP 178 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------H-c----------CC---C-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 4699999999999998766 2 1 12 2 477788 443333332221 11222 2333
Q ss_pred ccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 139 GVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 139 gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
+ . .+.+-.++++|+++|..+|||+.. | ..+|+.-++-|
T Consensus 179 ~---d-~e~lp~~~~FD~V~s~~vl~H~~d-p-------------------------------------~~~L~~l~~~L 216 (322)
T PRK15068 179 L---G-IEQLPALKAFDTVFSMGVLYHRRS-P-------------------------------------LDHLKQLKDQL 216 (322)
T ss_pred C---C-HHHCCCcCCcCEEEECChhhccCC-H-------------------------------------HHHHHHHHHhc
Confidence 2 2 234433789999999999998433 2 23677778899
Q ss_pred ccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEE
Q 017439 219 VPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMN 298 (371)
Q Consensus 219 ~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e 298 (371)
+|||++++..+..+..... .+...+.+..+.-.++.||.+++..++++.| |++.++.
T Consensus 217 kpGG~lvl~~~~i~~~~~~----------------------~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~ 273 (322)
T PRK15068 217 VPGGELVLETLVIDGDENT----------------------VLVPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIV 273 (322)
T ss_pred CCCcEEEEEEEEecCCCcc----------------------ccCchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEE
Confidence 9999999987554432110 0111222233333456799999999999988 9988776
Q ss_pred Ee
Q 017439 299 TF 300 (371)
Q Consensus 299 ~~ 300 (371)
..
T Consensus 274 ~~ 275 (322)
T PRK15068 274 DV 275 (322)
T ss_pred eC
Confidence 54
No 14
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.72 E-value=1.6e-07 Score=88.21 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=92.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC---CCcc-eeeec
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP---LSKK-YFATG 139 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~---~~~~-~f~~g 139 (371)
..+|+|+|||+|..+..+. + ++. .| ..+++.-|+-.+--...=+.+. ...+ -|..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~--------~-~~~--------~p---~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~- 112 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSAR--------R-NIN--------QP---NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC- 112 (239)
T ss_pred CCEEEEecCCCCHHHHHHH--------H-hcC--------CC---CCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE-
Confidence 4589999999999888776 2 221 22 3467777764432211111111 1111 2332
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
+++..- |..+.|+++|++++||++. +|...+|+.-.+-|+
T Consensus 113 --~d~~~~--~~~~~d~v~~~~~l~~~~~------------------------------------~~~~~~l~~i~~~Lk 152 (239)
T TIGR00740 113 --NDIRHV--EIKNASMVILNFTLQFLPP------------------------------------EDRIALLTKIYEGLN 152 (239)
T ss_pred --CChhhC--CCCCCCEEeeecchhhCCH------------------------------------HHHHHHHHHHHHhcC
Confidence 344332 3335889999999999632 233457888889999
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHH-cCCCchhhh----cccCcccccCCHHHHHHHhhcCCceE
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLAN-MGLIAEEKV----DSFNVPMYYPFLGELMGHIKRNKNFS 293 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~-eGli~~e~~----d~fn~P~Y~ps~eE~~~~i~~~g~F~ 293 (371)
|||++++.-..+.+... ..+.+.+.+..+.. +|. +++++ +.+.-.....|++|+++.+++.| |+
T Consensus 153 pgG~l~i~d~~~~~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 153 PNGVLVLSEKFRFEDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CCeEEEEeecccCCCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 99999988654433211 12334444443333 343 44433 22222334579999999999987 75
No 15
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.72 E-value=5.2e-08 Score=90.60 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=92.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC---CCcceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP---LSKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gv 140 (371)
.-+|+|+|||+|..+..+. + .+ .| ..+++..|+..+--...=+.+. ..+--++.+.
T Consensus 46 ~~~vLDiGcG~G~~~~~la--------~-~~---------~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d 104 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA--------E-AV---------GP---EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN 104 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH--------H-Hh---------CC---CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 4699999999999888666 2 22 12 2367778875433221111111 1111233332
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
+..--+|++++|+++++.++||++.. ..+|+.-.+-|+|
T Consensus 105 ---~~~~~~~~~~fD~V~~~~~l~~~~~~--------------------------------------~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 105 ---AMELPFDDNSFDYVTIGFGLRNVPDY--------------------------------------MQVLREMYRVVKP 143 (231)
T ss_pred ---hhcCCCCCCCccEEEEecccccCCCH--------------------------------------HHHHHHHHHHcCc
Confidence 23323678999999999999995431 1256667788999
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
||++++.-.+.++....... ....+..+-..+..+...+........ ..-..+|+.+|+++.+++.| |++.+++.+
T Consensus 144 gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 144 GGKVVCLETSQPTIPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred CeEEEEEECCCCCChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 99999876554432110000 000000001111111111110000000 01124789999999999988 998877765
No 16
>PRK08317 hypothetical protein; Provisional
Probab=98.70 E-value=2.1e-06 Score=79.06 Aligned_cols=218 Identities=15% Similarity=0.104 Sum_probs=112.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC--CCCcceeeecc
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV--PLSKKYFATGV 140 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l--~~~~~~f~~gv 140 (371)
...+|+|+|||+|..+..+. . ++. | .-+++.-|+-.+-....-+.. ....-.|..+.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a--------~-~~~---------~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA--------R-RVG---------P---EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------H-hcC---------C---CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc
Confidence 45799999999999887666 2 221 1 225666666443222111110 01111233222
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
+...-++++++|++++..++||+.+. ..+|+.-.+-|+|
T Consensus 78 ---~~~~~~~~~~~D~v~~~~~~~~~~~~--------------------------------------~~~l~~~~~~L~~ 116 (241)
T PRK08317 78 ---ADGLPFPDGSFDAVRSDRVLQHLEDP--------------------------------------ARALAEIARVLRP 116 (241)
T ss_pred ---cccCCCCCCCceEEEEechhhccCCH--------------------------------------HHHHHHHHHHhcC
Confidence 22223578899999999999996542 2257777889999
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
||.+++....-+.... .......+..+...|. ..+. + ..+..++.+.+++.| |+...++.+
T Consensus 117 gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~------~-------~~~~~~~~~~l~~aG-f~~~~~~~~ 177 (241)
T PRK08317 117 GGRVVVLDTDWDTLVW--HSGDRALMRKILNFWS---DHFA------D-------PWLGRRLPGLFREAG-LTDIEVEPY 177 (241)
T ss_pred CcEEEEEecCCCceee--cCCChHHHHHHHHHHH---hcCC------C-------CcHHHHHHHHHHHcC-CCceeEEEE
Confidence 9999988753221100 0001111222222222 1110 0 224568999999987 988777766
Q ss_pred ecCcccc-ccc-HHHHHHhHHHhhhhhhhhhhcHHHHHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEeC
Q 017439 301 THPLVHM-VYS-AEFWASLSRAAFGGLVGQHFGYQFVDRIFNYYSTKLAENMSSICDGKTQDKIELFVLLRRN 371 (371)
Q Consensus 301 ~~p~~~~-~~~-~~~~a~~iRa~~~~~l~~h~ge~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 371 (371)
..+.... +.+ ...+...++...+ ...+.++-++++++..++..... ...-.+.++++..||
T Consensus 178 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~k 240 (241)
T PRK08317 178 TLIETDLKEADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARAG-------EFFFSVTGFLVVGRK 240 (241)
T ss_pred EEeccCcchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhcC-------CEEEEEEEEEEEEeC
Confidence 4332110 111 1122222333322 12245566677777766654321 112246666666554
No 17
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.65 E-value=5.2e-07 Score=88.79 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=88.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC----CCCcce-ee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV----PLSKKY-FA 137 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l----~~~~~~-f~ 137 (371)
+.-+|+|+|||+|..+..++ . . -+ . .|+--|.-. .|-.-|..+ .....+ +.
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~--------~-~----------g~---~-~v~GiDpS~-~ml~q~~~~~~~~~~~~~v~~~ 176 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRML--------G-H----------GA---K-SLVGIDPTV-LFLCQFEAVRKLLDNDKRAILE 176 (314)
T ss_pred CCCEEEEeccCCcHHHHHHH--------H-c----------CC---C-EEEEEcCCH-HHHHHHHHHHHHhccCCCeEEE
Confidence 34699999999999876655 2 1 11 1 355555333 222222211 111111 22
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
. +. .+.+-+.+++|+|+|+.+|||+.. | ..+|+.-++-
T Consensus 177 ~---~~-ie~lp~~~~FD~V~s~gvL~H~~d-p-------------------------------------~~~L~el~r~ 214 (314)
T TIGR00452 177 P---LG-IEQLHELYAFDTVFSMGVLYHRKS-P-------------------------------------LEHLKQLKHQ 214 (314)
T ss_pred E---CC-HHHCCCCCCcCEEEEcchhhccCC-H-------------------------------------HHHHHHHHHh
Confidence 1 11 345555679999999999999532 2 1257788889
Q ss_pred cccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEE
Q 017439 218 LVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIM 297 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~ 297 (371)
|+|||+|++.....+.... . .+...+.+..+.-.++.||.+++..++++.| |+..++
T Consensus 215 LkpGG~Lvletl~i~g~~~------~----------------~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i 271 (314)
T TIGR00452 215 LVIKGELVLETLVIDGDLN------T----------------VLVPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRI 271 (314)
T ss_pred cCCCCEEEEEEEEecCccc------c----------------ccCchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEE
Confidence 9999999998764432110 0 0011122233333466799999999999987 987776
Q ss_pred EEe
Q 017439 298 NTF 300 (371)
Q Consensus 298 e~~ 300 (371)
...
T Consensus 272 ~~~ 274 (314)
T TIGR00452 272 LDV 274 (314)
T ss_pred Eec
Confidence 654
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=3.7e-07 Score=86.70 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=90.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC----Ccceeee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL----SKKYFAT 138 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~----~~~~f~~ 138 (371)
.+.+|+|+|||+|..|..+. + + ..+|+..|+-.+--...=+.+.. .+-.|+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la--------~-~---------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~ 99 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA--------E-L---------------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH 99 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH--------H-c---------------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEE
Confidence 45799999999999887776 2 1 11456666544332211111111 1112333
Q ss_pred ccCCCccccc--CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHh
Q 017439 139 GVPGSFHGRL--FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQ 216 (371)
Q Consensus 139 gvpgSFy~rL--fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 216 (371)
+. . ..+ ++++++|++++..+|||+...+ .+|+.-++
T Consensus 100 ~d---~-~~l~~~~~~~fD~V~~~~vl~~~~~~~--------------------------------------~~l~~~~~ 137 (255)
T PRK11036 100 CA---A-QDIAQHLETPVDLILFHAVLEWVADPK--------------------------------------SVLQTLWS 137 (255)
T ss_pred cC---H-HHHhhhcCCCCCEEEehhHHHhhCCHH--------------------------------------HHHHHHHH
Confidence 32 1 112 4678999999999999975421 14566667
Q ss_pred hcccCceEEEEecCcCCCCCCCCCCCcchH-HHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEE
Q 017439 217 ELVPGGLLLLLTPTIRDGIPMFSTPEGTNF-DYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIE 295 (371)
Q Consensus 217 EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~-~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~ 295 (371)
-|+|||++++.+...... .+ ..+..-+. .+..|+...+.. .-.|.+..+++|+.+++++.| |+++
T Consensus 138 ~LkpgG~l~i~~~n~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~~~ 203 (255)
T PRK11036 138 VLRPGGALSLMFYNANGL----------LMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQIM 203 (255)
T ss_pred HcCCCeEEEEEEECccHH----------HHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-CeEe
Confidence 899999999887554211 01 11111111 122333221111 123566789999999999887 9987
Q ss_pred EEEEe
Q 017439 296 IMNTF 300 (371)
Q Consensus 296 ~~e~~ 300 (371)
...-+
T Consensus 204 ~~~gi 208 (255)
T PRK11036 204 GKTGV 208 (255)
T ss_pred eeeeE
Confidence 66654
No 19
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.60 E-value=7e-07 Score=81.82 Aligned_cols=77 Identities=18% Similarity=0.241 Sum_probs=52.0
Q ss_pred CCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEe-c
Q 017439 151 ESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLT-P 229 (371)
Q Consensus 151 ~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~-~ 229 (371)
++++|+++|+.++||+.. .|...+++.-++-|+|||++++.. +
T Consensus 93 ~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred CCCcCEEEEecchhhCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 567999999999999632 234557888889999999965543 3
Q ss_pred CcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 230 TIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 230 gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
..++. +. . .| |-+..+.+|+++.++ | |++.+.+.
T Consensus 137 ~~~~~-~~-~-------------------~~------------~~~~~~~~el~~~~~--~-~~~~~~~~ 170 (197)
T PRK11207 137 DTADY-PC-T-------------------VG------------FPFAFKEGELRRYYE--G-WEMVKYNE 170 (197)
T ss_pred cCCCC-CC-C-------------------CC------------CCCccCHHHHHHHhC--C-CeEEEeeC
Confidence 32211 10 0 01 235578999999887 4 88877743
No 20
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.57 E-value=7.5e-06 Score=82.74 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=89.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGS 143 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgS 143 (371)
..+|+|+|||+|..++.+.+ ++ ..+|+.-|+-.+-....=+......--+..+.
T Consensus 168 g~rVLDIGcG~G~~a~~la~---------~~--------------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D--- 221 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAE---------HY--------------GVSVVGVTISAEQQKLAQERCAGLPVEIRLQD--- 221 (383)
T ss_pred CCEEEEeCCCccHHHHHHHH---------HC--------------CCEEEEEeCCHHHHHHHHHHhccCeEEEEECc---
Confidence 46999999999998876652 11 11344555543332221111111011122222
Q ss_pred cccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCce
Q 017439 144 FHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGL 223 (371)
Q Consensus 144 Fy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 223 (371)
|..+ ++++|.++|...++|+ +. +++..+|+.-.+-|+|||+
T Consensus 222 -~~~l--~~~fD~Ivs~~~~ehv---g~---------------------------------~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 222 -YRDL--NGQFDRIVSVGMFEHV---GP---------------------------------KNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred -hhhc--CCCCCEEEEeCchhhC---Ch---------------------------------HHHHHHHHHHHHHcCCCcE
Confidence 2233 5789999999999884 31 2344578888899999999
Q ss_pred EEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCccc-ccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 224 LLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPM-YYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 224 lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
+++...+.+...... ..-++.+.+|- +.|+.+++.+..+. .|+|+.++.+
T Consensus 263 lvl~~i~~~~~~~~~-------------------------~~~i~~yifp~g~lps~~~i~~~~~~--~~~v~d~~~~ 313 (383)
T PRK11705 263 FLLHTIGSNKTDTNV-------------------------DPWINKYIFPNGCLPSVRQIAQASEG--LFVMEDWHNF 313 (383)
T ss_pred EEEEEccCCCCCCCC-------------------------CCCceeeecCCCcCCCHHHHHHHHHC--CcEEEEEecC
Confidence 999988766431100 01123455663 68999999998774 5999888766
No 21
>PRK06202 hypothetical protein; Provisional
Probab=98.49 E-value=3.7e-06 Score=78.61 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC-Ccceeeecc
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL-SKKYFATGV 140 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~-~~~~f~~gv 140 (371)
.+..+|+|+|||+|.++..+.. ..++ . .| ..+++..|+-.+--. ..+.... .+--+..+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~----~~~~-----~------g~---~~~v~gvD~s~~~l~-~a~~~~~~~~~~~~~~~ 119 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLAR----WARR-----D------GL---RLEVTAIDPDPRAVA-FARANPRRPGVTFRQAV 119 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHH----HHHh-----C------CC---CcEEEEEcCCHHHHH-HHHhccccCCCeEEEEe
Confidence 3567999999999998886552 1111 1 12 357888888665432 2222211 111222222
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
...+- ++++++|+++|+.+|||+.. | ++..+|+.-++-++
T Consensus 120 ~~~l~---~~~~~fD~V~~~~~lhh~~d-~-----------------------------------~~~~~l~~~~r~~~- 159 (232)
T PRK06202 120 SDELV---AEGERFDVVTSNHFLHHLDD-A-----------------------------------EVVRLLADSAALAR- 159 (232)
T ss_pred ccccc---ccCCCccEEEECCeeecCCh-H-----------------------------------HHHHHHHHHHHhcC-
Confidence 22211 27789999999999999643 1 12234555544454
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcC-CCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMG-LIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eG-li~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
|.+++.-+.++.. .+.... ........| .+.++. ...-.-+++.+|+++.+++ | |++.+.-.
T Consensus 160 -~~~~i~dl~~~~~----------~~~~~~-~~~~~~~~~~~~~~d~---~~s~~~~~~~~el~~ll~~-G-f~~~~~~~ 222 (232)
T PRK06202 160 -RLVLHNDLIRSRL----------AYALFW-AGTRLLSRSSFVHTDG---LLSVRRSYTPAELAALAPQ-G-WRVERQWP 222 (232)
T ss_pred -eeEEEeccccCHH----------HHHHHH-HHHHHhccCceeeccc---hHHHHhhcCHHHHHHHhhC-C-CeEEeccc
Confidence 5555555555421 111111 111111112 222222 1112337899999999998 5 99988776
Q ss_pred eec
Q 017439 300 FTH 302 (371)
Q Consensus 300 ~~~ 302 (371)
|..
T Consensus 223 ~~~ 225 (232)
T PRK06202 223 FRY 225 (232)
T ss_pred eee
Confidence 643
No 22
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.49 E-value=4.6e-07 Score=89.49 Aligned_cols=154 Identities=13% Similarity=0.097 Sum_probs=89.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC---CC-Ccceeee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV---PL-SKKYFAT 138 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l---~~-~~~~f~~ 138 (371)
...+|+|+|||+|..+..+. + . ..+|+.-|.-..-....-+.. +. .+-.|..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La--------~--~--------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~ 186 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA--------R--M--------------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLC 186 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH--------H--c--------------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEe
Confidence 34699999999999877554 1 0 124555555543322221111 00 1112333
Q ss_pred ccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 139 GVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 139 gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
+ ++.+--++++++|++++..+|||+.+.+ .||+.-++-|
T Consensus 187 ~---dae~l~~~~~~FD~Vi~~~vLeHv~d~~--------------------------------------~~L~~l~r~L 225 (322)
T PLN02396 187 T---TAEKLADEGRKFDAVLSLEVIEHVANPA--------------------------------------EFCKSLSALT 225 (322)
T ss_pred c---CHHHhhhccCCCCEEEEhhHHHhcCCHH--------------------------------------HHHHHHHHHc
Confidence 3 2222124678999999999999965422 2788888899
Q ss_pred ccCceEEEEecCcCCCCCCCCCCCcchHHHH--HHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEE
Q 017439 219 VPGGLLLLLTPTIRDGIPMFSTPEGTNFDYL--GSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEI 296 (371)
Q Consensus 219 ~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l--~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~ 296 (371)
+|||++++....+... . .+..+ ..-+...+..|. .....+.+++|+++.+++.| |++..
T Consensus 226 kPGG~liist~nr~~~--------~-~~~~i~~~eyi~~~lp~gt---------h~~~~f~tp~eL~~lL~~aG-f~i~~ 286 (322)
T PLN02396 226 IPNGATVLSTINRTMR--------A-YASTIVGAEYILRWLPKGT---------HQWSSFVTPEELSMILQRAS-VDVKE 286 (322)
T ss_pred CCCcEEEEEECCcCHH--------H-HHHhhhhHHHHHhcCCCCC---------cCccCCCCHHHHHHHHHHcC-CeEEE
Confidence 9999999998755311 0 00000 001111111121 01123679999999999987 99887
Q ss_pred EEEe
Q 017439 297 MNTF 300 (371)
Q Consensus 297 ~e~~ 300 (371)
+.-+
T Consensus 287 ~~G~ 290 (322)
T PLN02396 287 MAGF 290 (322)
T ss_pred Eeee
Confidence 7655
No 23
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.48 E-value=1.8e-06 Score=81.82 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=88.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc-CC---CC-cceee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS-VP---LS-KKYFA 137 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~-l~---~~-~~~f~ 137 (371)
...+|+|+|||+|.+++.+. + .+. .| ..+++.-|.-..-- ...+. +. .. +--+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~--------~-~~~--------~~---~~~v~gvD~S~~ml-~~A~~~~~~~~~~~~v~~~ 114 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVR--------R-NIH--------HD---NCKIIAIDNSPAMI-ERCRRHIDAYKAPTPVDVI 114 (247)
T ss_pred CCCEEEEEcccCCHHHHHHH--------H-hcC--------CC---CCeEEEEeCCHHHH-HHHHHHHHhcCCCCCeEEE
Confidence 34689999999999888765 2 111 12 33566666543321 11111 11 11 11122
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
. |++.+ + |....|+++++.++||++. . +...+|+.-++-
T Consensus 115 ~---~d~~~-~-~~~~~D~vv~~~~l~~l~~--~----------------------------------~~~~~l~~i~~~ 153 (247)
T PRK15451 115 E---GDIRD-I-AIENASMVVLNFTLQFLEP--S----------------------------------ERQALLDKIYQG 153 (247)
T ss_pred e---CChhh-C-CCCCCCEEehhhHHHhCCH--H----------------------------------HHHHHHHHHHHh
Confidence 2 22222 2 3345899999999999652 1 122367777889
Q ss_pred cccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhccc---Cccccc-CCHHHHHHHhhcCCceE
Q 017439 218 LVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSF---NVPMYY-PFLGELMGHIKRNKNFS 293 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f---n~P~Y~-ps~eE~~~~i~~~g~F~ 293 (371)
|+|||.+++.-.-..+... ..+.+...|.++....-.+++++..+ ---... -|+++..+++++.| |+
T Consensus 154 LkpGG~l~l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F~ 224 (247)
T PRK15451 154 LNPGGALVLSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FE 224 (247)
T ss_pred cCCCCEEEEEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-ch
Confidence 9999999997533222211 22344555665554544555555321 001222 37888888888877 54
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.48 E-value=3.2e-06 Score=77.35 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=78.9
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC--C-cceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL--S-KKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~--~-~~~f~~gv 140 (371)
+.+|+|+|||+|.+++.+.. + -.+|+.-|+..+--. ..+.... . +-.+..+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~---------~---------------g~~V~~iD~s~~~l~-~a~~~~~~~~~~v~~~~~d 85 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL---------A---------------GYDVRAWDHNPASIA-SVLDMKARENLPLRTDAYD 85 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH---------C---------------CCeEEEEECCHHHHH-HHHHHHHHhCCCceeEecc
Confidence 46999999999999998772 1 114555666432211 1111100 0 00111111
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
. ...-+++++|+++|+.++||++. .|+..+++.-++-|+|
T Consensus 86 ---~-~~~~~~~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~Lkp 125 (195)
T TIGR00477 86 ---I-NAAALNEDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRP 125 (195)
T ss_pred ---c-hhccccCCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCC
Confidence 1 11123468999999999999532 2344578888899999
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
||++++......+..+. | . .|-|-.+++|+++.++. |++.+.+.
T Consensus 126 gG~lli~~~~~~~~~~~----------------------~---------~-~~~~~~~~~el~~~f~~---~~~~~~~e 169 (195)
T TIGR00477 126 GGYNLIVAAMDTADYPC----------------------H---------M-PFSFTFKEDELRQYYAD---WELLKYNE 169 (195)
T ss_pred CcEEEEEEecccCCCCC----------------------C---------C-CcCccCCHHHHHHHhCC---CeEEEeec
Confidence 99966554322221110 1 0 12346789999998873 88877763
No 25
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.47 E-value=5e-07 Score=70.95 Aligned_cols=95 Identities=26% Similarity=0.308 Sum_probs=61.1
Q ss_pred eeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccc
Q 017439 68 ADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGR 147 (371)
Q Consensus 68 aDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~r 147 (371)
+|+|||+|.++..+. + + . ...++-.|.-..--...=+.......-+..+. +..-
T Consensus 1 LdiG~G~G~~~~~l~--------~-~--~------------~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d---~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA--------K-R--G------------GASVTGIDISEEMLEQARKRLKNEGVSFRQGD---AEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHH--------H-T--T------------TCEEEEEES-HHHHHHHHHHTTTSTEEEEESB---TTSS
T ss_pred CEecCcCCHHHHHHH--------h-c--c------------CCEEEEEeCCHHHHHHHHhcccccCchheeeh---HHhC
Confidence 699999999999888 3 1 0 12566666655533333333332222244443 4444
Q ss_pred cCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEE
Q 017439 148 LFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLL 226 (371)
Q Consensus 148 LfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl 226 (371)
-||++|+|+++++.++||+ + |...+|+.-++=|||||++++
T Consensus 55 ~~~~~sfD~v~~~~~~~~~---~-----------------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 PFPDNSFDVVFSNSVLHHL---E-----------------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SS-TT-EEEEEEESHGGGS---S-----------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccccccccceeec---c-----------------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 7799999999999999997 2 233478888899999999985
No 26
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.43 E-value=4.6e-07 Score=85.73 Aligned_cols=166 Identities=22% Similarity=0.184 Sum_probs=102.9
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCc---ceeeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSK---KYFATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~---~~f~~g 139 (371)
+..+|+|+|||||--|+.+. + .+. .-+|+.-|...+..+.-=+.+.... -.|+.|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k-~~g-------------~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------K-SVG-------------TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------H-hcC-------------CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 57999999999999999887 3 221 2367888887777666555554321 235555
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
. .-+=-||++|+|++.+++.||++.+++. .|+--++=||
T Consensus 109 d---Ae~LPf~D~sFD~vt~~fglrnv~d~~~--------------------------------------aL~E~~RVlK 147 (238)
T COG2226 109 D---AENLPFPDNSFDAVTISFGLRNVTDIDK--------------------------------------ALKEMYRVLK 147 (238)
T ss_pred c---hhhCCCCCCccCEEEeeehhhcCCCHHH--------------------------------------HHHHHHHhhc
Confidence 4 2333369999999999999999877665 3555667999
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHH-HHHHHHHcCCCc--hhhh-cccCcccccCCHHHHHHHhhcCCceEEE
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGS-CLYDLANMGLIA--EEKV-DSFNVPMYYPFLGELMGHIKRNKNFSIE 295 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~-al~~mv~eGli~--~e~~-d~fn~P~Y~ps~eE~~~~i~~~g~F~I~ 295 (371)
|||++++.=+..++..+... ..+..... ++-.+. .+++ .+++ --.....-+|+.+++.+.+++.| |+.+
T Consensus 148 pgG~~~vle~~~p~~~~~~~----~~~~~~~~~v~P~~g--~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i 220 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRK----AYILYYFKYVLPLIG--KLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEV 220 (238)
T ss_pred CCeEEEEEEcCCCCchhhHH----HHHHHHHHhHhhhhc--eeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEE
Confidence 99999888888765432111 01111111 111110 1111 1111 01122233899999999999977 8755
Q ss_pred EEE
Q 017439 296 IMN 298 (371)
Q Consensus 296 ~~e 298 (371)
..+
T Consensus 221 ~~~ 223 (238)
T COG2226 221 RYE 223 (238)
T ss_pred eeE
Confidence 533
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.42 E-value=2.7e-06 Score=82.40 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=54.5
Q ss_pred CCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecC
Q 017439 151 ESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPT 230 (371)
Q Consensus 151 ~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 230 (371)
++++|+++|+.++|+++. +++..+|+.-.+-|+|||++++....
T Consensus 182 ~~~fD~I~~~~vl~~l~~------------------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 182 QEEYDFILSTVVLMFLNR------------------------------------ERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cCCccEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 678999999999999632 34556888888999999997765533
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcc-cccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 231 IRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVP-MYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 231 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
..+..+ ...| -+..+.+|+++.+.. |+|.+.+.
T Consensus 226 ~~~~~~---------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~e 259 (287)
T PRK12335 226 DTEDYP---------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYNE 259 (287)
T ss_pred ccccCC---------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEec
Confidence 222110 0122 346789999999975 99888753
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.41 E-value=1.9e-06 Score=79.72 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecC
Q 017439 151 ESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPT 230 (371)
Q Consensus 151 ~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 230 (371)
++++|+++|..++|++.+ +..+|+.-++-|+|||++++.-..
T Consensus 65 ~~~fD~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 65 PDTYDLVFGFEVIHHIKD--------------------------------------KMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCCEeehHHHHHhCCC--------------------------------------HHHHHHHHHHHcCCCCEEEEEEcc
Confidence 458999999999999533 233788888999999999987653
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 231 IRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 231 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
.+.... . . .-..+.|.++.+|+.+.+++.| |++...+.+
T Consensus 107 ~~~~~~----------------~---------~-----~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 107 ANLLSA----------------I---------E-----HEETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred cccCcc----------------c---------c-----ccccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 221100 0 0 0113456899999999999876 999888766
No 29
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.40 E-value=9e-07 Score=83.54 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC---Ccceeee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL---SKKYFAT 138 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~---~~~~f~~ 138 (371)
....+|+|+|||+|-.|+.+. + +. .| ..+|+..|...+--..-=+.+.. .+--|+.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~--------~-~~---------~~---~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELA--------R-RV---------GP---NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHG--------G-GS---------S------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHH--------H-HC---------CC---ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 345799999999999888776 3 22 12 34688888776663333222221 1223666
Q ss_pred ccCCCccccc-CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 139 GVPGSFHGRL-FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 139 gvpgSFy~rL-fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
|. -+.| ||++|+|.+++++.||-+.+.+ ..|+.-.+=
T Consensus 105 ~d----a~~lp~~d~sfD~v~~~fglrn~~d~~--------------------------------------~~l~E~~RV 142 (233)
T PF01209_consen 105 GD----AEDLPFPDNSFDAVTCSFGLRNFPDRE--------------------------------------RALREMYRV 142 (233)
T ss_dssp -B----TTB--S-TT-EEEEEEES-GGG-SSHH--------------------------------------HHHHHHHHH
T ss_pred cC----HHHhcCCCCceeEEEHHhhHHhhCCHH--------------------------------------HHHHHHHHH
Confidence 66 4444 6999999999999999854422 246666689
Q ss_pred cccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhccc----CcccccCCHHHHHHHhhcCCceE
Q 017439 218 LVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSF----NVPMYYPFLGELMGHIKRNKNFS 293 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~f----n~P~Y~ps~eE~~~~i~~~g~F~ 293 (371)
|||||++++.=.++++.... ...|...-..+.=++ -.+++.+ .+.+ ..-.-+|+.+|+.+.+++.| |+
T Consensus 143 LkPGG~l~ile~~~p~~~~~-----~~~~~~y~~~ilP~~-g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~ 214 (233)
T PF01209_consen 143 LKPGGRLVILEFSKPRNPLL-----RALYKFYFKYILPLI-GRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG-FK 214 (233)
T ss_dssp EEEEEEEEEEEEEB-SSHHH-----HHHHHH-------------------------------------------------
T ss_pred cCCCeEEEEeeccCCCCchh-----hceeeeeeccccccc-ccccccc-cccccccccccccccccccccccccccc-cc
Confidence 99999999888887754210 001111111000010 1222222 1111 11123789999999999987 88
Q ss_pred EEEEEE
Q 017439 294 IEIMNT 299 (371)
Q Consensus 294 I~~~e~ 299 (371)
..+.+.
T Consensus 215 ~v~~~~ 220 (233)
T PF01209_consen 215 NVEYRP 220 (233)
T ss_dssp ------
T ss_pred cccccc
Confidence 655443
No 30
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.39 E-value=2e-06 Score=79.60 Aligned_cols=164 Identities=19% Similarity=0.145 Sum_probs=92.6
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC---Cc-ceeeec
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL---SK-KYFATG 139 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~---~~-~~f~~g 139 (371)
..+|+|+|||+|..+..+. . .+. + ..+++..|+..+-....=+.+.. .. -.|..
T Consensus 52 ~~~vldiG~G~G~~~~~l~--------~-~~~---------~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~- 109 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALA--------K-AVG---------K---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ- 109 (239)
T ss_pred CCeEEEeCCCCCHHHHHHH--------H-HcC---------C---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe-
Confidence 4799999999999888776 2 211 0 23577777755432222121111 11 12222
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
+++.+..++++++|++++++.+|++++.+ .+|+...+-|+
T Consensus 110 --~d~~~~~~~~~~~D~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~L~ 149 (239)
T PRK00216 110 --GDAEALPFPDNSFDAVTIAFGLRNVPDID--------------------------------------KALREMYRVLK 149 (239)
T ss_pred --cccccCCCCCCCccEEEEecccccCCCHH--------------------------------------HHHHHHHHhcc
Confidence 23444446778999999999999865422 25777778999
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHH--------HHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCc
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLY--------DLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKN 291 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~--------~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~ 291 (371)
|||++++.-...++.. .+..+.+.+. .+........+.+. +.-..+++.+|++.++++.|
T Consensus 150 ~gG~li~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG- 217 (239)
T PRK00216 150 PGGRLVILEFSKPTNP---------PLKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG- 217 (239)
T ss_pred CCcEEEEEEecCCCch---------HHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-
Confidence 9999988765443221 0112211111 11111110000000 00013579999999999987
Q ss_pred eEEEEEEEee
Q 017439 292 FSIEIMNTFT 301 (371)
Q Consensus 292 F~I~~~e~~~ 301 (371)
|++.+...+.
T Consensus 218 f~~~~~~~~~ 227 (239)
T PRK00216 218 FERVRYRNLT 227 (239)
T ss_pred Cceeeeeeee
Confidence 9887777653
No 31
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.33 E-value=7.1e-06 Score=75.02 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=93.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC-CCcceeeeccC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP-LSKKYFATGVP 141 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~-~~~~~f~~gvp 141 (371)
...+|+|+|||+|..+..+. + ++. . ..+++.-|....-....=+.++ ..+--|..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~-~~~--------~----~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~--- 94 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------K-SAP--------D----RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ--- 94 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------H-hcC--------C----CceEEEEECCHHHHHHHHHHhccCCCceEEe---
Confidence 45799999999999888766 2 211 0 1356677764322222211111 11112222
Q ss_pred CCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccC
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPG 221 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 221 (371)
+.+.+-.++++++|+++++..+|+... ...+|+.-.+.|+||
T Consensus 95 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 95 ADAEALPFEDNSFDAVTIAFGLRNVTD--------------------------------------IQKALREMYRVLKPG 136 (223)
T ss_pred cchhcCCCCCCcEEEEEEeeeeCCccc--------------------------------------HHHHHHHHHHHcCCC
Confidence 334444467889999999999998543 123688888999999
Q ss_pred ceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHH-HHH--cCCCchhhhcccCc----ccccCCHHHHHHHhhcCCceEE
Q 017439 222 GLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYD-LAN--MGLIAEEKVDSFNV----PMYYPFLGELMGHIKRNKNFSI 294 (371)
Q Consensus 222 G~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~-mv~--eGli~~e~~d~fn~----P~Y~ps~eE~~~~i~~~g~F~I 294 (371)
|++++.-....... .+..+.+.+.. |.. .+.... ..+.+.. ..-+++.+|++.++++.| |++
T Consensus 137 G~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~ 205 (223)
T TIGR01934 137 GRLVILEFSKPANA---------LLKKFYKFYLKNVLPSIGGLISK-NAEAYTYLPESIRAFPSQEELAAMLKEAG-FEE 205 (223)
T ss_pred cEEEEEEecCCCch---------hhHHHHHHHHHHhhhhhhhhhcC-CchhhHHHHHHHHhCCCHHHHHHHHHHcC-Ccc
Confidence 99997654332221 12222222221 110 011110 0111110 112578999999999987 998
Q ss_pred EEEEEee
Q 017439 295 EIMNTFT 301 (371)
Q Consensus 295 ~~~e~~~ 301 (371)
...+...
T Consensus 206 ~~~~~~~ 212 (223)
T TIGR01934 206 VRYRSLT 212 (223)
T ss_pred ceeeeee
Confidence 8877663
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.31 E-value=9.4e-05 Score=71.52 Aligned_cols=91 Identities=22% Similarity=0.274 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCccc-ccCCHHHHH
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPM-YYPFLGELM 283 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~-Y~ps~eE~~ 283 (371)
+++..|++.-++-|+|||++++...+..+..... +...+.+-+..+.+|- +.|+.+|+.
T Consensus 143 ~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~--------------------~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 143 KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA--------------------ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH--------------------CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred hHHHHHHHHHHHhcCCCcEEEEEecccccccchh--------------------hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 5677799999999999999999987765431100 0000001123333454 568999999
Q ss_pred HHhhcCCceEEEEEEEeecCcccccccHHHHHHhHHHhhhhhh
Q 017439 284 GHIKRNKNFSIEIMNTFTHPLVHMVYSAEFWASLSRAAFGGLV 326 (371)
Q Consensus 284 ~~i~~~g~F~I~~~e~~~~p~~~~~~~~~~~a~~iRa~~~~~l 326 (371)
..+++.| |+|++.+.+. ..++.++|.|.+.+.
T Consensus 203 ~~~~~~~-l~v~~~~~~~----------~hY~~Tl~~W~~~f~ 234 (273)
T PF02353_consen 203 RAAEDAG-LEVEDVENLG----------RHYARTLRAWRENFD 234 (273)
T ss_dssp HHHHHTT--EEEEEEE-H----------HHHHHHHHHHHHHHH
T ss_pred HHHhcCC-EEEEEEEEcC----------cCHHHHHHHHHHHHH
Confidence 9888765 9999887652 334555555555544
No 33
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.31 E-value=3.6e-06 Score=83.67 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=87.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPG 142 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpg 142 (371)
...+|+|+|||+|..++.+. + ++ | ..+++..|+..+--...-+..+..+--+. .|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La--------~-~~----------~---~~~VtgVD~S~~mL~~A~~k~~~~~i~~i---~g 167 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV--------K-HV----------D---AKNVTILDQSPHQLAKAKQKEPLKECKII---EG 167 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH--------H-HC----------C---CCEEEEEECCHHHHHHHHHhhhccCCeEE---ec
Confidence 34799999999999887766 2 11 1 22577777754432222111111111222 23
Q ss_pred CcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 143 SFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
+..+--+|++++|+++++.++|++.+. ...|+.-.+-|+|||
T Consensus 168 D~e~lp~~~~sFDvVIs~~~L~~~~d~--------------------------------------~~~L~e~~rvLkPGG 209 (340)
T PLN02490 168 DAEDLPFPTDYADRYVSAGSIEYWPDP--------------------------------------QRGIKEAYRVLKIGG 209 (340)
T ss_pred cHHhCCCCCCceeEEEEcChhhhCCCH--------------------------------------HHHHHHHHHhcCCCc
Confidence 333334678999999999999984321 124777778999999
Q ss_pred eEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEee
Q 017439 223 LLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFT 301 (371)
Q Consensus 223 ~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~ 301 (371)
++++.-....+ .| +...+.+ ....+++.+|+.+.+++.| |+...++.+.
T Consensus 210 ~LvIi~~~~p~-----------~~--~~r~~~~----------------~~~~~~t~eEl~~lL~~aG-F~~V~i~~i~ 258 (340)
T PLN02490 210 KACLIGPVHPT-----------FW--LSRFFAD----------------VWMLFPKEEEYIEWFTKAG-FKDVKLKRIG 258 (340)
T ss_pred EEEEEEecCcc-----------hh--HHHHhhh----------------hhccCCCHHHHHHHHHHCC-CeEEEEEEcC
Confidence 99876322111 00 0100110 0112579999999999976 9988877763
No 34
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.24 E-value=1.2e-05 Score=73.84 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=78.1
Q ss_pred CceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC
Q 017439 63 STFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP 130 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~ 130 (371)
++-+++|+|||.|+||+-+.+ ..|+.+.+ .-...+ ++|+...-|+..-+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~-~a~~~~---------l~i~~~~~Dl~~~~--------- 90 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQR-LAEEEG---------LDIRTRVADLNDFD--------- 90 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHH-HHHHTT----------TEEEEE-BGCCBS---------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHhhcC---------ceeEEEEecchhcc---------
Confidence 357999999999999999986 34554444 211111 24677777764322
Q ss_pred CCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHH
Q 017439 131 LSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESF 210 (371)
Q Consensus 131 ~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~F 210 (371)
+++..|+++|...+|.|.. +.+..+
T Consensus 91 -------------------~~~~yD~I~st~v~~fL~~------------------------------------~~~~~i 115 (192)
T PF03848_consen 91 -------------------FPEEYDFIVSTVVFMFLQR------------------------------------ELRPQI 115 (192)
T ss_dssp --------------------TTTEEEEEEESSGGGS-G------------------------------------GGHHHH
T ss_pred -------------------ccCCcCEEEEEEEeccCCH------------------------------------HHHHHH
Confidence 2356899999999999653 123346
Q ss_pred HHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCC
Q 017439 211 LNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNK 290 (371)
Q Consensus 211 L~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g 290 (371)
++...+.++|||.+++...-..+..+. ..+ |-+...++|++.....
T Consensus 116 ~~~m~~~~~pGG~~li~~~~~~~d~p~-------------------------------~~~-~~f~~~~~EL~~~y~d-- 161 (192)
T PF03848_consen 116 IENMKAATKPGGYNLIVTFMETPDYPC-------------------------------PSP-FPFLLKPGELREYYAD-- 161 (192)
T ss_dssp HHHHHHTEEEEEEEEEEEEB--SSS---------------------------------SS---S--B-TTHHHHHTTT--
T ss_pred HHHHHhhcCCcEEEEEEEecccCCCCC-------------------------------CCC-CCcccCHHHHHHHhCC--
Confidence 777889999999988855432221110 012 2334578999999884
Q ss_pred ceEEEEEEEe
Q 017439 291 NFSIEIMNTF 300 (371)
Q Consensus 291 ~F~I~~~e~~ 300 (371)
|+|.+.+..
T Consensus 162 -W~il~y~E~ 170 (192)
T PF03848_consen 162 -WEILKYNED 170 (192)
T ss_dssp -SEEEEEEEE
T ss_pred -CeEEEEEcc
Confidence 998877553
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.22 E-value=8.1e-06 Score=66.76 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=63.8
Q ss_pred ceEEeeecCCCCcccHHHHH--------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC
Q 017439 64 TFKIADLGCSTGPNTFIAMQ--------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV 129 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~--------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l 129 (371)
.-+|+|+|||+|..++.+.+ ..++..++ +....+ . .+ .+++...|+ ..++.
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~--~--~~---~i~~~~~d~-~~~~~------ 66 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARE-RAAEEG--L--SD---RITFVQGDA-EFDPD------ 66 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-HHHHTT--T--TT---TEEEEESCC-HGGTT------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcC--C--CC---CeEEEECcc-ccCcc------
Confidence 35899999999999999997 55666665 542211 0 22 566777666 22211
Q ss_pred CCCcceeeeccCCCcccccCCCCceeEEEecC-CccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHH
Q 017439 130 PLSKKYFATGVPGSFHGRLFPESSLHVAHTSN-ALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIE 208 (371)
Q Consensus 130 ~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~-alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~ 208 (371)
....+|+++++. ++|++-.. .+..
T Consensus 67 --------------------~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~ 91 (112)
T PF12847_consen 67 --------------------FLEPFDLVICSGFTLHFLLPL-----------------------------------DERR 91 (112)
T ss_dssp --------------------TSSCEEEEEECSGSGGGCCHH-----------------------------------HHHH
T ss_pred --------------------cCCCCCEEEECCCccccccch-----------------------------------hHHH
Confidence 112299999999 77752211 3455
Q ss_pred HHHHHHHhhcccCceEEEEe
Q 017439 209 SFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~~ 228 (371)
.+|+.-.+-|+|||+|++..
T Consensus 92 ~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 92 RVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 67888889999999999874
No 36
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=3.4e-06 Score=78.79 Aligned_cols=144 Identities=22% Similarity=0.328 Sum_probs=94.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhh--------hhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcc
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELI--------KYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKK 134 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~--------~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~ 134 (371)
..-..+|+|||-|..+..+...-|+.+-.+ .|++ ++ .| +++...+.-|-..-|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~---~q--dp-~i~~~~~v~DEE~Ld------------- 132 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD---AQ--DP-SIETSYFVGDEEFLD------------- 132 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc---cC--CC-ceEEEEEecchhccc-------------
Confidence 345789999999999988876555443110 1221 22 34 122222222322222
Q ss_pred eeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 017439 135 YFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNAR 214 (371)
Q Consensus 135 ~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~R 214 (371)
|-+||+|+++||-++||..+.|.. +...
T Consensus 133 --------------f~ens~DLiisSlslHW~NdLPg~--------------------------------------m~~c 160 (325)
T KOG2940|consen 133 --------------FKENSVDLIISSLSLHWTNDLPGS--------------------------------------MIQC 160 (325)
T ss_pred --------------ccccchhhhhhhhhhhhhccCchH--------------------------------------HHHH
Confidence 578999999999999999999963 3334
Q ss_pred HhhcccCceEEEEecCcCCCCCCCCCCCcchHHH-HHHHHHHHHHcCCCchhhhcccCcccccC--CHHHHHHHhhcCCc
Q 017439 215 AQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDY-LGSCLYDLANMGLIAEEKVDSFNVPMYYP--FLGELMGHIKRNKN 291 (371)
Q Consensus 215 a~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~-l~~al~~mv~eGli~~e~~d~fn~P~Y~p--s~eE~~~~i~~~g~ 291 (371)
...|||.|.++..++|-+. .+++ .+--|.+|..+|-|++ -..| ...++-.++.+.|
T Consensus 161 k~~lKPDg~FiasmlggdT-----------LyELR~slqLAelER~GGiSp---------hiSPf~qvrDiG~LL~rAG- 219 (325)
T KOG2940|consen 161 KLALKPDGLFIASMLGGDT-----------LYELRCSLQLAELEREGGISP---------HISPFTQVRDIGNLLTRAG- 219 (325)
T ss_pred HHhcCCCccchhHHhcccc-----------HHHHHHHhhHHHHHhccCCCC---------CcChhhhhhhhhhHHhhcC-
Confidence 5789999999999988643 3443 4455779999999863 3333 4556777788876
Q ss_pred eEEEEEE
Q 017439 292 FSIEIMN 298 (371)
Q Consensus 292 F~I~~~e 298 (371)
|....+.
T Consensus 220 F~m~tvD 226 (325)
T KOG2940|consen 220 FSMLTVD 226 (325)
T ss_pred cccceec
Confidence 7755443
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.17 E-value=1.8e-05 Score=75.70 Aligned_cols=151 Identities=15% Similarity=0.145 Sum_probs=83.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc---CCCCcceeeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS---VPLSKKYFATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~---l~~~~~~f~~g 139 (371)
..-+|+|+|||+|..++.+. . .+. + .-+|+.-|.-.+-....=+. ..-.+-.|..+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~-~~g---------~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~ 135 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------R-RVG---------P---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG 135 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------H-HhC---------C---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 34699999999998776554 2 111 1 22567777644332211111 11111123333
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
.+..--+|++++|+++|+.++||....+ ..|+.-.+-|+
T Consensus 136 ---d~~~l~~~~~~fD~Vi~~~v~~~~~d~~--------------------------------------~~l~~~~r~Lk 174 (272)
T PRK11873 136 ---EIEALPVADNSVDVIISNCVINLSPDKE--------------------------------------RVFKEAFRVLK 174 (272)
T ss_pred ---chhhCCCCCCceeEEEEcCcccCCCCHH--------------------------------------HHHHHHHHHcC
Confidence 3322235788999999999999942211 13555567899
Q ss_pred cCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 220 PGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 220 pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
|||++++.-....... .+.+...+. +.. |.+ ....+.+|+.+++++.| |....+..
T Consensus 175 pGG~l~i~~~~~~~~~----------~~~~~~~~~-~~~-~~~-----------~~~~~~~e~~~~l~~aG-f~~v~i~~ 230 (272)
T PRK11873 175 PGGRFAISDVVLRGEL----------PEEIRNDAE-LYA-GCV-----------AGALQEEEYLAMLAEAG-FVDITIQP 230 (272)
T ss_pred CCcEEEEEEeeccCCC----------CHHHHHhHH-HHh-ccc-----------cCCCCHHHHHHHHHHCC-CCceEEEe
Confidence 9999998754322211 122222221 111 111 12457899999999877 87766543
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.17 E-value=5.3e-06 Score=66.83 Aligned_cols=96 Identities=24% Similarity=0.211 Sum_probs=48.3
Q ss_pred eeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC---CCCcceeeeccCCCc
Q 017439 68 ADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV---PLSKKYFATGVPGSF 144 (371)
Q Consensus 68 aDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSF 144 (371)
+|+|||+|..+..++ + ++ | ..+++..|.-..--...=+.+ .....-.........
T Consensus 1 LdiGcG~G~~~~~l~--------~-~~----------~---~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 58 (99)
T PF08242_consen 1 LDIGCGTGRLLRALL--------E-EL----------P---DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDL 58 (99)
T ss_dssp -EESTTTS-TTTTHH--------H-HC--------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS-
T ss_pred CEeCccChHHHHHHH--------H-hC----------C---CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCCh
Confidence 699999999999888 3 22 2 457778887766542111111 111112222222222
Q ss_pred ccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceE
Q 017439 145 HGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLL 224 (371)
Q Consensus 145 y~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 224 (371)
.... +++++|+|+++.+|||+ + |+..+|+.-++-|+|||+|
T Consensus 59 ~~~~-~~~~fD~V~~~~vl~~l---~-----------------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 59 FDYD-PPESFDLVVASNVLHHL---E-----------------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --CC-C----SEEEEE-TTS-----S------------------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhcc-cccccceehhhhhHhhh---h-----------------------------------hHHHHHHHHHHHcCCCCCC
Confidence 2221 22799999999999997 2 2234788888999999986
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.07 E-value=9.2e-06 Score=70.84 Aligned_cols=107 Identities=24% Similarity=0.318 Sum_probs=69.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCc---hhhhhhcCCCCcceeeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNND---FNTLFKSVPLSKKYFATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~ND---Fn~lF~~l~~~~~~f~~g 139 (371)
+..+|+|+|||+|..++.+.. +. .| ..+++.-|+-..- -+..++.+...+--|..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~---------~~---------~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~ 61 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK---------EL---------NP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG 61 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH---------HS---------TT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHH---------hc---------CC---CCEEEEEECcHHHHHHhhcccccccccccceEEe
Confidence 468999999999999988772 11 11 2357777776533 233333443333345555
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcc
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELV 219 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~ 219 (371)
.=-+ ..+.++ +++|+++++.++||+.. ...+|+.-.+-|+
T Consensus 62 d~~~-l~~~~~-~~~D~I~~~~~l~~~~~--------------------------------------~~~~l~~~~~~lk 101 (152)
T PF13847_consen 62 DIED-LPQELE-EKFDIIISNGVLHHFPD--------------------------------------PEKVLKNIIRLLK 101 (152)
T ss_dssp BTTC-GCGCSS-TTEEEEEEESTGGGTSH--------------------------------------HHHHHHHHHHHEE
T ss_pred ehhc-cccccC-CCeeEEEEcCchhhccC--------------------------------------HHHHHHHHHHHcC
Confidence 5333 222244 89999999999999443 2235777778999
Q ss_pred cCceEEEEecC
Q 017439 220 PGGLLLLLTPT 230 (371)
Q Consensus 220 pGG~lvl~~~g 230 (371)
+||++++....
T Consensus 102 ~~G~~i~~~~~ 112 (152)
T PF13847_consen 102 PGGILIISDPN 112 (152)
T ss_dssp EEEEEEEEEEE
T ss_pred CCcEEEEEECC
Confidence 99999998876
No 40
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.02 E-value=4.6e-05 Score=70.31 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=55.5
Q ss_pred CCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecC
Q 017439 151 ESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPT 230 (371)
Q Consensus 151 ~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 230 (371)
++++|+++++.++|+... ...+|+.-.+-|+|||.+++....
T Consensus 110 ~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 110 AKSFDVVTCMEVLEHVPD--------------------------------------PQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCccEEEehhHHHhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 478999999999888432 123677777889999999887654
Q ss_pred cCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 231 IRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 231 r~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
++.. ......+. .++. .+..... ......+.+.+++.+++++.| |+|..+..+
T Consensus 152 ~~~~--------~~~~~~~~---~~~~-~~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~~ 204 (224)
T TIGR01983 152 RTPK--------SYLLAIVG---AEYI-LRIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKGL 204 (224)
T ss_pred CCch--------HHHHHHHh---hhhh-hhcCCCC----cCChhhcCCHHHHHHHHHHcC-CeeeeeeeE
Confidence 3211 00011110 0111 1111110 001112558899999999876 999877754
No 41
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.00 E-value=0.00017 Score=66.70 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=25.6
Q ss_pred CcccccCCHHHHHHHhhcCCceEEEEEEEeec
Q 017439 271 NVPMYYPFLGELMGHIKRNKNFSIEIMNTFTH 302 (371)
Q Consensus 271 n~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~ 302 (371)
..++++++++|+.+++++.| |++...+....
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~~ 209 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVST 209 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeecccc
Confidence 34678899999999999887 99998886643
No 42
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.00 E-value=4.1e-05 Score=70.48 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCccee
Q 017439 31 IYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEF 110 (371)
Q Consensus 31 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei 110 (371)
.+|+.+.....|.+-...-+... .+ .....+|+|+|||+|..+..+.. + .| ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~VLDiGcGtG~~~~~la~---------~----------~p---~~ 65 (202)
T PRK00121 13 KGQQRAIEELWPRLSPAPLDWAE--LF---GNDAPIHLEIGFGKGEFLVEMAK---------A----------NP---DI 65 (202)
T ss_pred cchhhhhcccchhhcCCCCCHHH--Hc---CCCCCeEEEEccCCCHHHHHHHH---------H----------CC---Cc
Confidence 45666666666665322211111 11 23567999999999999998762 1 11 22
Q ss_pred EEEecCCCcCchhhhhhcC---CCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCcee
Q 017439 111 QVFFNDHSNNDFNTLFKSV---PLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHIL 187 (371)
Q Consensus 111 ~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~ 187 (371)
+|+..|.-..--..+-+.+ ...+-.|..+..-..+.+.+|++++|.++++++.+|..... .. .
T Consensus 66 ~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~-~~----------~--- 131 (202)
T PRK00121 66 NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRH-HK----------R--- 131 (202)
T ss_pred cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccc-cc----------c---
Confidence 4555555443333222221 11111233332101133457889999999999888855311 00 0
Q ss_pred ecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCc
Q 017439 188 CSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIA 263 (371)
Q Consensus 188 ~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~ 263 (371)
..+...||+.-++-|+|||.+++..... +.+...+..|...|+-.
T Consensus 132 ----------------~~~~~~~l~~i~~~LkpgG~l~i~~~~~---------------~~~~~~~~~~~~~g~~~ 176 (202)
T PRK00121 132 ----------------RLVQPEFLALYARKLKPGGEIHFATDWE---------------GYAEYMLEVLSAEGGFL 176 (202)
T ss_pred ----------------ccCCHHHHHHHHHHcCCCCEEEEEcCCH---------------HHHHHHHHHHHhCcccc
Confidence 0123457888889999999999876322 34555666666777643
No 43
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.99 E-value=0.00013 Score=69.94 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=43.0
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPG 142 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpg 142 (371)
...+|+|+|||+|..+..+.. .... .. ..+++..|+-.+--...=+..+ +--|..+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~---------~~~~-------~~---~~~v~giD~s~~~l~~A~~~~~--~~~~~~~d-- 141 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALAD---------ALPE-------IT---TMQLFGLDISKVAIKYAAKRYP--QVTFCVAS-- 141 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHH---------hccc-------cc---CCeEEEECCCHHHHHHHHHhCC--CCeEEEee--
Confidence 346899999999998887762 1111 10 1257777775543322212211 11233332
Q ss_pred CcccccCCCCceeEEEecCC
Q 017439 143 SFHGRLFPESSLHVAHTSNA 162 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~a 162 (371)
..+--||++|+|+++|..+
T Consensus 142 -~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 142 -SHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred -cccCCCcCCceeEEEEecC
Confidence 2222367899999998654
No 44
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.0011 Score=64.27 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcc-cccCCHHHHH
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVP-MYYPFLGELM 283 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P-~Y~ps~eE~~ 283 (371)
+.+..|++.-.+-|+|||+|++...+....... . ...-.+.+.+| -+.||..++.
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~---------------------~~~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---R---------------------FPDFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---c---------------------chHHHHHhCCCCCcCCCHHHHH
Confidence 556679999999999999999999887654210 0 00111222233 2468999999
Q ss_pred HHhhcCCceEEEEEEEe
Q 017439 284 GHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 284 ~~i~~~g~F~I~~~e~~ 300 (371)
..+++.| |.+...+.+
T Consensus 209 ~~~~~~~-~~v~~~~~~ 224 (283)
T COG2230 209 ELASEAG-FVVLDVESL 224 (283)
T ss_pred HHHHhcC-cEEehHhhh
Confidence 9988876 998877755
No 45
>PRK06922 hypothetical protein; Provisional
Probab=97.96 E-value=1.8e-05 Score=84.26 Aligned_cols=116 Identities=22% Similarity=0.172 Sum_probs=71.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC-C-cceeeeccC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL-S-KKYFATGVP 141 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~-~-~~~f~~gvp 141 (371)
..+|+|+|||+|..+..+. + + .| ..+++.-|+..+-=...=+.++. . +-.+..|..
T Consensus 419 g~rVLDIGCGTG~ls~~LA--------~-~----------~P---~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa 476 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIE--------E-E----------TE---DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA 476 (677)
T ss_pred CCEEEEeCCCCCHHHHHHH--------H-h----------CC---CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch
Confidence 4699999999998776554 2 2 22 34677777776532222111211 1 112333332
Q ss_pred CCcccccCCCCceeEEEecCCcccc-CCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWL-SKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWL-S~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
.. ....||++++|++++++++||+ +.+|..-. .++ .+|...+|+.-.+-|+|
T Consensus 477 ~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~---------------------~edl~kiLreI~RVLKP 529 (677)
T PRK06922 477 IN-LSSSFEKESVDTIVYSSILHELFSYIEYEGK-----KFN---------------------HEVIKKGLQSAYEVLKP 529 (677)
T ss_pred Hh-CccccCCCCEEEEEEchHHHhhhhhcccccc-----ccc---------------------HHHHHHHHHHHHHHcCC
Confidence 22 1223788999999999999964 55552110 011 25777889999999999
Q ss_pred CceEEEEe
Q 017439 221 GGLLLLLT 228 (371)
Q Consensus 221 GG~lvl~~ 228 (371)
||++++.=
T Consensus 530 GGrLII~D 537 (677)
T PRK06922 530 GGRIIIRD 537 (677)
T ss_pred CcEEEEEe
Confidence 99999963
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.96 E-value=6.1e-05 Score=72.37 Aligned_cols=43 Identities=30% Similarity=0.486 Sum_probs=33.4
Q ss_pred CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEE
Q 017439 149 FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 149 fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 227 (371)
+|.+++|+|+|.++|||++. | +....|+.-++-|+|||.|++.
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~-----------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P-----------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H-----------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999643 1 2233677778899999999874
No 47
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.92 E-value=3.4e-05 Score=70.19 Aligned_cols=27 Identities=7% Similarity=0.065 Sum_probs=23.5
Q ss_pred cccCCHHHHHHHhhcCCceEEEEEEEee
Q 017439 274 MYYPFLGELMGHIKRNKNFSIEIMNTFT 301 (371)
Q Consensus 274 ~Y~ps~eE~~~~i~~~g~F~I~~~e~~~ 301 (371)
..+++.+|+.+++++.| |++.....++
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 45789999999999987 9999988774
No 48
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.89 E-value=0.00036 Score=68.04 Aligned_cols=151 Identities=16% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhh-cCCC---Ccceee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFK-SVPL---SKKYFA 137 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~-~l~~---~~~~f~ 137 (371)
.+..+|+|+|||+|..++.+. + + .| ..+++.-|+|. --...+ .+.. ..+ +
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~--------~-~----------~p---~~~~~~~D~~~--~~~~a~~~~~~~gl~~r--v 201 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML--------K-H----------FP---ELDSTILNLPG--AIDLVNENAAEKGVADR--M 201 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH--------H-H----------CC---CCEEEEEecHH--HHHHHHHHHHhCCccce--E
Confidence 345799999999998887776 3 2 23 45677778863 112211 1111 112 3
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
..++|+|++.-+|+ .|+++.+..+|-. ++ ++-..+|+.-++-
T Consensus 202 ~~~~~d~~~~~~~~--~D~v~~~~~lh~~---~~---------------------------------~~~~~il~~~~~~ 243 (306)
T TIGR02716 202 RGIAVDIYKESYPE--ADAVLFCRILYSA---NE---------------------------------QLSTIMCKKAFDA 243 (306)
T ss_pred EEEecCccCCCCCC--CCEEEeEhhhhcC---Ch---------------------------------HHHHHHHHHHHHh
Confidence 34667888655565 4999988888831 21 1122367777889
Q ss_pred cccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEE
Q 017439 218 LVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIE 295 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~ 295 (371)
|+|||++++.=.-.++... ..+..+...+. .-|... .+.-+++.+|+.+++++.| |+..
T Consensus 244 L~pgG~l~i~d~~~~~~~~-------~~~~~~~~~~~---~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 244 MRSGGRLLILDMVIDDPEN-------PNFDYLSHYIL---GAGMPF--------SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred cCCCCEEEEEEeccCCCCC-------chhhHHHHHHH---Hccccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence 9999999887432222110 01222222221 112210 1123566899999999987 8644
No 49
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.88 E-value=0.00074 Score=62.39 Aligned_cols=32 Identities=6% Similarity=0.062 Sum_probs=25.4
Q ss_pred cccccCCHHHHHHHhhcCCceEEEEEEEeecCc
Q 017439 272 VPMYYPFLGELMGHIKRNKNFSIEIMNTFTHPL 304 (371)
Q Consensus 272 ~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~p~ 304 (371)
.+.+..+.+|+.+.++..| |++...+.+...+
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~ 219 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERISSGF 219 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeeccchh
Confidence 3566789999999999887 9998888765443
No 50
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.84 E-value=0.00066 Score=64.11 Aligned_cols=102 Identities=22% Similarity=0.247 Sum_probs=63.2
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcc
Q 017439 66 KIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFH 145 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy 145 (371)
.+.|+|||+|..++.+. . .+ + +|+..|.-...-+ +.+..+ +.-..-+|-++-
T Consensus 36 ~a~DvG~G~Gqa~~~ia--------e-~~--------------k-~VIatD~s~~mL~-~a~k~~---~~~y~~t~~~ms 87 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIA--------E-HY--------------K-EVIATDVSEAMLK-VAKKHP---PVTYCHTPSTMS 87 (261)
T ss_pred eEEEeccCCCcchHHHH--------H-hh--------------h-hheeecCCHHHHH-HhhcCC---CcccccCCcccc
Confidence 89999999996666555 2 11 1 3455555443322 111111 111222233333
Q ss_pred ----cccC-CCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 146 ----GRLF-PESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 146 ----~rLf-P~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
..|. +++|||+|.+.-|+|| =|+.+|++.-.+-|++
T Consensus 88 ~~~~v~L~g~e~SVDlI~~Aqa~HW---------------------------------------Fdle~fy~~~~rvLRk 128 (261)
T KOG3010|consen 88 SDEMVDLLGGEESVDLITAAQAVHW---------------------------------------FDLERFYKEAYRVLRK 128 (261)
T ss_pred ccccccccCCCcceeeehhhhhHHh---------------------------------------hchHHHHHHHHHHcCC
Confidence 2333 5999999999999999 2556688888899999
Q ss_pred CceEEEEecCcCCC
Q 017439 221 GGLLLLLTPTIRDG 234 (371)
Q Consensus 221 GG~lvl~~~gr~~~ 234 (371)
.|-+++...-+++.
T Consensus 129 ~Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 129 DGGLIAVWNYNDDF 142 (261)
T ss_pred CCCEEEEEEccCCC
Confidence 88777777666543
No 51
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.83 E-value=0.00017 Score=67.20 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=57.6
Q ss_pred CCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEec
Q 017439 150 PESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 150 P~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
+++++|+++++..+++.... ..+|+...+-|+|||++++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~--------------------------------------~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDP--------------------------------------ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCCH--------------------------------------HHHHHHHHHHcCCCcEEEEEec
Confidence 55789999999888874321 1257777788999999998876
Q ss_pred CcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 230 TIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 230 gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
++.... ..+.... ...+..++- . .......+.+++|+.+++++.| |++.+....
T Consensus 153 ~~~~~~--------~~~~~~~---~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 206 (233)
T PRK05134 153 NRNLKS--------YLLAIVG---AEYVLRMLP-K----GTHDYKKFIKPSELAAWLRQAG-LEVQDITGL 206 (233)
T ss_pred CCChHH--------HHHHHhh---HHHHhhhcC-c----ccCchhhcCCHHHHHHHHHHCC-CeEeeeeeE
Confidence 532110 0111111 111111111 0 0011123678999999999977 998877643
No 52
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.82 E-value=0.00026 Score=65.69 Aligned_cols=109 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGS 143 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgS 143 (371)
.-+|+|+|||+|..|..++ + +.. + .-.|+.-|+-. .+ .++ .-.+..| +
T Consensus 52 ~~~VLDlG~GtG~~t~~l~--------~-~~~---------~---~~~V~aVDi~~--~~----~~~--~v~~i~~---D 99 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV--------T-QIG---------D---KGRVIACDILP--MD----PIV--GVDFLQG---D 99 (209)
T ss_pred CCEEEEEcccCCHHHHHHH--------H-HcC---------C---CceEEEEeccc--cc----CCC--CcEEEec---C
Confidence 3589999999999888776 3 221 1 12566666633 11 111 1123333 3
Q ss_pred cccc--------cCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 144 FHGR--------LFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 144 Fy~r--------LfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
+.+. -++++++|+++|+.+.||... |. .| . ..+ .......|+.=.
T Consensus 100 ~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~~L~~~~ 152 (209)
T PRK11188 100 FRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVELALDMCR 152 (209)
T ss_pred CCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHHHHHHHH
Confidence 4432 257889999999999999332 21 11 0 000 111346788888
Q ss_pred hhcccCceEEEEecCc
Q 017439 216 QELVPGGLLLLLTPTI 231 (371)
Q Consensus 216 ~EL~pGG~lvl~~~gr 231 (371)
+-|+|||++++.....
T Consensus 153 ~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 153 DVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHcCCCCEEEEEEecC
Confidence 9999999999966543
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.78 E-value=0.00013 Score=66.09 Aligned_cols=128 Identities=16% Similarity=0.229 Sum_probs=73.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchh---hhhhcCCCCcceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFN---TLFKSVPLSKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn---~lF~~l~~~~~~f~~gv 140 (371)
..+|+|+|||+|..|+.+. . . .| ..+|+.-|.-.+--. ...+...-.+--+..+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la--------~-~----------~~---~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d 100 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--------I-A----------RP---ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGR 100 (181)
T ss_pred CCeEEEecCCCCccHHHHH--------H-H----------CC---CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecc
Confidence 5799999999999988775 1 1 11 235667776654211 11111211121233443
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
. ..+.+.+++|+++|.. +|++ | .+++.-.+-|+|
T Consensus 101 ~----~~~~~~~~fD~I~s~~-~~~~---~--------------------------------------~~~~~~~~~Lkp 134 (181)
T TIGR00138 101 A----EDFQHEEQFDVITSRA-LASL---N--------------------------------------VLLELTLNLLKV 134 (181)
T ss_pred h----hhccccCCccEEEehh-hhCH---H--------------------------------------HHHHHHHHhcCC
Confidence 2 2234578999999865 3331 1 134444566999
Q ss_pred CceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcc
Q 017439 221 GGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVP 273 (371)
Q Consensus 221 GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P 273 (371)
||++++.. |... ..-+....+.+..+|+ ..-+.+++..|
T Consensus 135 gG~lvi~~-~~~~------------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 135 GGYFLAYK-GKKY------------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred CCEEEEEc-CCCc------------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 99999874 2211 1334444566667787 45667777777
No 54
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.75 E-value=0.00013 Score=67.05 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=68.1
Q ss_pred CCCceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS 128 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~ 128 (371)
.+..-+++|+|||.|..|..+.. ..|+..++ ++.. .| .+++..-|+|.-
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~-Rl~~-------~~---~V~~~~~dvp~~-------- 101 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARE-RLAG-------LP---HVEWIQADVPEF-------- 101 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHH-HTTT--------S---SEEEEES-TTT---------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHH-hcCC-------CC---CeEEEECcCCCC--------
Confidence 45678999999999999998864 55666666 5543 44 677777777652
Q ss_pred CCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHH
Q 017439 129 VPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIE 208 (371)
Q Consensus 129 l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~ 208 (371)
.|++++|+++.+-.+++|+.. .|+.
T Consensus 102 --------------------~P~~~FDLIV~SEVlYYL~~~-----------------------------------~~L~ 126 (201)
T PF05401_consen 102 --------------------WPEGRFDLIVLSEVLYYLDDA-----------------------------------EDLR 126 (201)
T ss_dssp ----------------------SS-EEEEEEES-GGGSSSH-----------------------------------HHHH
T ss_pred --------------------CCCCCeeEEEEehHhHcCCCH-----------------------------------HHHH
Confidence 388899999999999998652 4567
Q ss_pred HHHHHHHhhcccCceEEEEec
Q 017439 209 SFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
.++..-.+-|.|||.||+.-.
T Consensus 127 ~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 127 AALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEe
Confidence 788888899999999999664
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.75 E-value=4.6e-05 Score=72.56 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHH
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMG 284 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~ 284 (371)
+|...||++-.+-|+|||+++++..-|.-.-. . +.- .+.+.+...|-.|.-.-|+ |.+++|+..
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~--~-~~i----~~~E~vl~ivp~Gth~~ek---------fi~p~e~~~ 235 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSF--A-GTI----FLAEIVLRIVPKGTHTWEK---------FINPEELTS 235 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHh--h-ccc----cHHHHHHHhcCCCCcCHHH---------cCCHHHHHH
Confidence 45667999999999999999999987742110 0 011 1222233367778776666 889999999
Q ss_pred HhhcCCceEEEEEE
Q 017439 285 HIKRNKNFSIEIMN 298 (371)
Q Consensus 285 ~i~~~g~F~I~~~e 298 (371)
+++.++ +.++.+-
T Consensus 236 ~l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 236 ILNANG-AQVNDVV 248 (282)
T ss_pred HHHhcC-cchhhhh
Confidence 999975 7765554
No 56
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.75 E-value=0.00013 Score=68.01 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=45.1
Q ss_pred cCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEE
Q 017439 148 LFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 148 LfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 227 (371)
=|+++++|-++|-.|+|||=..-+...+ =++.+..|+..-..-|++|++-|+.
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s~~~---------------------------P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKSLHV---------------------------PKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCccccC---------------------------hHHHHHHHhhhhhhhhccCceeEEE
Confidence 3799999999999999997554332211 1367778999999999999999999
Q ss_pred ecCcC
Q 017439 228 TPTIR 232 (371)
Q Consensus 228 ~~gr~ 232 (371)
+--..
T Consensus 160 fYpen 164 (270)
T KOG1541|consen 160 FYPEN 164 (270)
T ss_pred ecccc
Confidence 95443
No 57
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.73 E-value=0.00011 Score=75.79 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=61.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC-C-CcceeeeccC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP-L-SKKYFATGVP 141 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~-~-~~~~f~~gvp 141 (371)
..+|+|+|||+|.+|..+... + . +|+..|.-..--..- +... . .+-.|..+.-
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~---------~--------------~-~v~giD~s~~~l~~a-~~~~~~~~~i~~~~~d~ 92 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK---------A--------------G-QVIALDFIESVIKKN-ESINGHYKNVKFMCADV 92 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh---------C--------------C-EEEEEeCCHHHHHHH-HHHhccCCceEEEEecc
Confidence 358999999999999987721 1 0 234444322211110 0011 0 1112333332
Q ss_pred CCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccC
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPG 221 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 221 (371)
... .--+|++++|+++|+.++||++. .++..+|+.-++-|+||
T Consensus 93 ~~~-~~~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 93 TSP-DLNISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVG 135 (475)
T ss_pred ccc-ccCCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCC
Confidence 111 11258899999999999999643 23445788888999999
Q ss_pred ceEEEE
Q 017439 222 GLLLLL 227 (371)
Q Consensus 222 G~lvl~ 227 (371)
|+|++.
T Consensus 136 G~l~~~ 141 (475)
T PLN02336 136 GYIFFR 141 (475)
T ss_pred eEEEEE
Confidence 999875
No 58
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00022 Score=67.28 Aligned_cols=195 Identities=18% Similarity=0.169 Sum_probs=107.8
Q ss_pred hHHhhHHHHHHHH--------HHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhccc
Q 017439 26 YAKNSIYQEAIVN--------GSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDD 97 (371)
Q Consensus 26 Y~~nS~~Q~~~~~--------~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~ 97 (371)
|.+++.-+....- +-..++.+...+++..+ ...+.+|+++|||.|...+.++ +..
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll----------~~~-- 93 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLL----------KTS-- 93 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhh----------hcC--
Confidence 5555555444432 13567777777655432 2234499999999998888777 222
Q ss_pred CCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC--Ccce--eeeccCCCcccccCCCCceeEEEecCCccccCCCCccc
Q 017439 98 CECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL--SKKY--FATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEI 173 (371)
Q Consensus 98 ~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~--~~~~--f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l 173 (371)
+ .| .+.+|.+|-..+-=+-+ +.-.. ...+ |+.-.-++=-..-++++|+|++..-+.| |-+|+.
T Consensus 94 ---~--n~---~l~v~acDfsp~Ai~~v-k~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe- 160 (264)
T KOG2361|consen 94 ---P--NN---RLKVYACDFSPRAIELV-KKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE- 160 (264)
T ss_pred ---C--CC---CeEEEEcCCChHHHHHH-HhccccchhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChH-
Confidence 2 34 58899998777652222 22111 1111 2222211113333455666665444332 334331
Q ss_pred cCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHH
Q 017439 174 TNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCL 253 (371)
Q Consensus 174 ~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al 253 (371)
-+.+-+..-.+-|||||.|++-=.|+.+... +
T Consensus 161 --------------------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dlaq----------------l 192 (264)
T KOG2361|consen 161 --------------------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ----------------L 192 (264)
T ss_pred --------------------------------HHHHHHHHHHHHhCCCcEEEEeecccchHHH----------------H
Confidence 1222355666889999999998777765311 1
Q ss_pred HHHHHcCCCchhhh-cccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 254 YDLANMGLIAEEKV-DSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 254 ~~mv~eGli~~e~~-d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
+-. .+-.|++..+ ..=--+.|+.+.+|+++++.+.| |..++++.-
T Consensus 193 RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 193 RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 110 1222222111 12234789999999999999987 877666543
No 59
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.68 E-value=0.0001 Score=69.99 Aligned_cols=174 Identities=20% Similarity=0.238 Sum_probs=101.8
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc-----CCCC-cc
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS-----VPLS-KK 134 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~-----l~~~-~~ 134 (371)
+.+..+++|.+||||-.|+.++.. +.. +.+. . +=.|...|.-.+.-+--=+. |... .-
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~----v~s-~~~~-------~----~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~ 161 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRH----VKS-QFGD-------R----ESKVTVLDINPHMLAVGKQRAKKRPLKASSRV 161 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHh----hcc-ccCC-------C----CceEEEEeCCHHHHHHHHHHHhhcCCCcCCce
Confidence 455699999999999999998832 222 2211 1 23677777765543322111 1111 13
Q ss_pred eeeeccCCCccccc-CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHH
Q 017439 135 YFATGVPGSFHGRL-FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNA 213 (371)
Q Consensus 135 ~f~~gvpgSFy~rL-fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~ 213 (371)
.++.|. -+.| ||++|+|...+++.+.-..+++.. ..+||+
T Consensus 162 ~w~~~d----AE~LpFdd~s~D~yTiafGIRN~th~~k~----------------------l~EAYR------------- 202 (296)
T KOG1540|consen 162 EWVEGD----AEDLPFDDDSFDAYTIAFGIRNVTHIQKA----------------------LREAYR------------- 202 (296)
T ss_pred EEEeCC----cccCCCCCCcceeEEEecceecCCCHHHH----------------------HHHHHH-------------
Confidence 455555 4455 699999999999998865554432 345665
Q ss_pred HHhhcccCceEEEEecCcCCCCCCCCCCCcchHHH---HHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCC
Q 017439 214 RAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDY---LGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNK 290 (371)
Q Consensus 214 Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~---l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g 290 (371)
=|||||++.|.-+..-+..+.......+.++. +.+.+....+.+..=-+-+. -+|+.||+...+++.|
T Consensus 203 ---VLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG 273 (296)
T KOG1540|consen 203 ---VLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG 273 (296)
T ss_pred ---hcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC
Confidence 89999999988887766433211111222222 23333322222221111111 1789999999999987
Q ss_pred ceEEEE-EEE
Q 017439 291 NFSIEI-MNT 299 (371)
Q Consensus 291 ~F~I~~-~e~ 299 (371)
|.... +|.
T Consensus 274 -F~~~~~ye~ 282 (296)
T KOG1540|consen 274 -FSSVNGYEN 282 (296)
T ss_pred -Ccccccccc
Confidence 87664 443
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.66 E-value=0.00027 Score=68.94 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=98.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC----CCcceeee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP----LSKKYFAT 138 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~----~~~~~f~~ 138 (371)
+--+|+|+||+.|.-++.+. . + -| . .|+--| |+-.|..-|..+. ....+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~--------~-~----------GA---~-~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML--------G-R----------GA---K-SVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh--------h-c----------CC---C-EEEEEC-CChHHHHHHHHHHHHhCCCccEEEc
Confidence 45699999999999999877 2 1 11 1 455555 5556666666643 33344443
Q ss_pred ccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 139 GVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 139 gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
.+ ..+.|-+.+++|++||--.|=-++. |- ..|+.-.+-|
T Consensus 171 pl---gvE~Lp~~~~FDtVF~MGVLYHrr~-Pl-------------------------------------~~L~~Lk~~L 209 (315)
T PF08003_consen 171 PL---GVEDLPNLGAFDTVFSMGVLYHRRS-PL-------------------------------------DHLKQLKDSL 209 (315)
T ss_pred Cc---chhhccccCCcCEEEEeeehhccCC-HH-------------------------------------HHHHHHHHhh
Confidence 21 1355555789999999876655433 31 1355666789
Q ss_pred ccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEE
Q 017439 219 VPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSI 294 (371)
Q Consensus 219 ~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I 294 (371)
+|||.|||.++..+.... .-++.++.+..|+-=|+.||..-++.++++.| |+-
T Consensus 210 ~~gGeLvLETlvi~g~~~----------------------~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~ 262 (315)
T PF08003_consen 210 RPGGELVLETLVIDGDEN----------------------TVLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKD 262 (315)
T ss_pred CCCCEEEEEEeeecCCCc----------------------eEEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cce
Confidence 999999999987654321 12456777788888889999999999999988 753
No 61
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.62 E-value=0.00024 Score=69.41 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=68.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC-CcceeeeccCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL-SKKYFATGVPG 142 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~-~~~~f~~gvpg 142 (371)
..+|+|+|||+|..|..+++... . ..+++--|+...-=....+.+.. .+..=+.++-|
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~-----------------~----~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALR-----------------Q----PARYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhc-----------------c----CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 46899999999999998883321 0 13466666655432222233221 11122223334
Q ss_pred Cccccc-CCCC----ceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 143 SFHGRL-FPES----SLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 143 SFy~rL-fP~~----Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
.|.+.+ +|+. ...++++.+++++++ | .|..+||+.-++-
T Consensus 123 D~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~----------------------------------~e~~~~L~~i~~~ 166 (301)
T TIGR03438 123 DFTQPLALPPEPAAGRRLGFFPGSTIGNFT--P----------------------------------EEAVAFLRRIRQL 166 (301)
T ss_pred cccchhhhhcccccCCeEEEEecccccCCC--H----------------------------------HHHHHHHHHHHHh
Confidence 554422 2222 456777778888864 2 3445689999999
Q ss_pred cccCceEEEEecCcCC
Q 017439 218 LVPGGLLLLLTPTIRD 233 (371)
Q Consensus 218 L~pGG~lvl~~~gr~~ 233 (371)
|+|||+|++.+-..++
T Consensus 167 L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 167 LGPGGGLLIGVDLVKD 182 (301)
T ss_pred cCCCCEEEEeccCCCC
Confidence 9999999988755443
No 62
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.62 E-value=7.8e-05 Score=60.42 Aligned_cols=98 Identities=29% Similarity=0.375 Sum_probs=59.4
Q ss_pred EeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC--CCcceeeeccCCCc
Q 017439 67 IADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP--LSKKYFATGVPGSF 144 (371)
Q Consensus 67 IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvpgSF 144 (371)
|+|+|||+|.++..+... + +. .| +.++..-|+-.+-....=+... ..+--|..+.....
T Consensus 1 ILDlgcG~G~~~~~l~~~---------~-~~------~~---~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR---------F-DA------GP---SSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHH---------S---------------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHH---------h-hh------cc---cceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 799999999999988832 2 11 12 3467777776665443333331 11233455553221
Q ss_pred ccccCCCCceeEEEecCC-ccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 145 HGRLFPESSLHVAHTSNA-LPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 145 y~rLfP~~Svd~~~Ss~a-lHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
-++.+++|+++++.+ +|++++ +++..+|+.-++-|+|||
T Consensus 62 ---~~~~~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 62 ---PFSDGKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---HHHSSSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTEEEEE
T ss_pred ---cccCCCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHhCCCC
Confidence 136779999999766 888443 456678999999999998
No 63
>PRK05785 hypothetical protein; Provisional
Probab=97.55 E-value=0.00071 Score=63.45 Aligned_cols=75 Identities=21% Similarity=0.199 Sum_probs=45.4
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGS 143 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgS 143 (371)
.-+|+|+|||+|.++..+. + ++ ..+|+.-|+-.+- -..-+. ..-++. ++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~-~~--------------~~~v~gvD~S~~M-l~~a~~----~~~~~~---~d 100 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------K-VF--------------KYYVVALDYAENM-LKMNLV----ADDKVV---GS 100 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------H-hc--------------CCEEEEECCCHHH-HHHHHh----ccceEE---ec
Confidence 4699999999999887665 2 11 0145666654332 111111 011222 23
Q ss_pred cccccCCCCceeEEEecCCccccCCC
Q 017439 144 FHGRLFPESSLHVAHTSNALPWLSKI 169 (371)
Q Consensus 144 Fy~rLfP~~Svd~~~Ss~alHWLS~v 169 (371)
+-.-=||++|+|+++|+++|||+.+.
T Consensus 101 ~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 101 FEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred hhhCCCCCCCEEEEEecChhhccCCH
Confidence 33333689999999999999996553
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.52 E-value=0.0014 Score=61.06 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHH
Q 017439 206 DIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGH 285 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~ 285 (371)
+...+++.-.+-|+|||++++..+..+.... .| |-|.-+.+|+++.
T Consensus 130 ~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~----------------------~g------------pp~~~~~~eL~~~ 175 (213)
T TIGR03840 130 MRQRYAAHLLALLPPGARQLLITLDYDQSEM----------------------AG------------PPFSVSPAEVEAL 175 (213)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC----------------------CC------------cCCCCCHHHHHHH
Confidence 3344778888999999987777665432210 01 4467889999999
Q ss_pred hhcCCceEEEEEEEee
Q 017439 286 IKRNKNFSIEIMNTFT 301 (371)
Q Consensus 286 i~~~g~F~I~~~e~~~ 301 (371)
+.. .|+|+.++...
T Consensus 176 f~~--~~~i~~~~~~~ 189 (213)
T TIGR03840 176 YGG--HYEIELLESRD 189 (213)
T ss_pred hcC--CceEEEEeecc
Confidence 975 58888888654
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.52 E-value=0.00034 Score=63.84 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=63.3
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC--Ccc-eeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL--SKK-YFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~--~~~-~f~~gv 140 (371)
.-+|+|+|||+|..++.+... .| ..+++.-|.-..--...-+.+.. -.+ .|+.+.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~-------------------~p---~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d 74 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ-------------------NP---DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD 74 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh-------------------CC---CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 458999999999998877731 11 22344444433222111111110 011 122222
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
--.+-..++|++++|.+++++..+|..+ +... .++. -..||+.-++-|+|
T Consensus 75 ~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h~~----------~r~~-------------------~~~~l~~~~r~Lkp 124 (194)
T TIGR00091 75 ANELLDKFFPDGSLSKVFLNFPDPWPKK-RHNK----------RRIT-------------------QPHFLKEYANVLKK 124 (194)
T ss_pred HHHHHHhhCCCCceeEEEEECCCcCCCC-Cccc----------cccC-------------------CHHHHHHHHHHhCC
Confidence 1112234567789999999999999433 1100 0000 12377777889999
Q ss_pred CceEEEEe
Q 017439 221 GGLLLLLT 228 (371)
Q Consensus 221 GG~lvl~~ 228 (371)
||.+++..
T Consensus 125 gG~l~~~t 132 (194)
T TIGR00091 125 GGVIHFKT 132 (194)
T ss_pred CCEEEEEe
Confidence 99998877
No 66
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.52 E-value=0.003 Score=59.01 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHh
Q 017439 207 IESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHI 286 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i 286 (371)
...+++.-++-|+|||+.++......+.. + .| |-|.-+.+|+++.+
T Consensus 134 R~~~~~~l~~lL~pgG~~~l~~~~~~~~~-----------------~-----~g------------Pp~~~~~~el~~~~ 179 (218)
T PRK13255 134 RERYVQQLAALLPAGCRGLLVTLDYPQEE-----------------L-----AG------------PPFSVSDEEVEALY 179 (218)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEEEeCCcc-----------------C-----CC------------CCCCCCHHHHHHHh
Confidence 34467788899999997655544332211 0 11 44678999999999
Q ss_pred hcCCceEEEEEEEee
Q 017439 287 KRNKNFSIEIMNTFT 301 (371)
Q Consensus 287 ~~~g~F~I~~~e~~~ 301 (371)
.. .|+|+.++...
T Consensus 180 ~~--~~~i~~~~~~~ 192 (218)
T PRK13255 180 AG--CFEIELLERQD 192 (218)
T ss_pred cC--CceEEEeeecc
Confidence 63 59998888653
No 67
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.49 E-value=0.0007 Score=62.56 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=46.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPG 142 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpg 142 (371)
+.-+|+|+|||+|.++..+. + . .| ..+++.-|+-.+--...=+.++. .. +.. |
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~--------~-~----------~~---~~~v~giDiS~~~l~~A~~~~~~-~~-~~~---~ 95 (204)
T TIGR03587 43 KIASILELGANIGMNLAALK--------R-L----------LP---FKHIYGVEINEYAVEKAKAYLPN-IN-IIQ---G 95 (204)
T ss_pred CCCcEEEEecCCCHHHHHHH--------H-h----------CC---CCeEEEEECCHHHHHHHHhhCCC-Cc-EEE---e
Confidence 34679999999998888765 2 1 11 23456666655443322121221 11 222 3
Q ss_pred CcccccCCCCceeEEEecCCcccc
Q 017439 143 SFHGRLFPESSLHVAHTSNALPWL 166 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~alHWL 166 (371)
+..+ -+|++++|+|+|+.+||++
T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred eccC-CCCCCCEEEEEECChhhhC
Confidence 3344 5789999999999999875
No 68
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.47 E-value=0.0025 Score=59.82 Aligned_cols=104 Identities=23% Similarity=0.344 Sum_probs=71.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccC
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVP 141 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvp 141 (371)
.+.-+|+|+|+|+|..+..++ + + .| .+++..-|||..= ...-+ ..+ +.-+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~-~----------~P---~l~~~v~Dlp~v~-~~~~~----~~r--v~~~~ 149 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------R-A----------YP---NLRATVFDLPEVI-EQAKE----ADR--VEFVP 149 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------H-H----------ST---TSEEEEEE-HHHH-CCHHH----TTT--EEEEE
T ss_pred cCccEEEeccCcchHHHHHHH--------H-H----------CC---CCcceeeccHhhh-hcccc----ccc--ccccc
Confidence 345689999999999988776 3 2 45 6789999999741 11111 222 23378
Q ss_pred CCcccccCCCCceeEEEecCCcc-ccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 142 GSFHGRLFPESSLHVAHTSNALP-WLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alH-WLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
|.|+ .=+|. .|+++-.+.|| | |+ +|-..+|+.-++.|+|
T Consensus 150 gd~f-~~~P~--~D~~~l~~vLh~~----~d---------------------------------~~~~~iL~~~~~al~p 189 (241)
T PF00891_consen 150 GDFF-DPLPV--ADVYLLRHVLHDW----SD---------------------------------EDCVKILRNAAAALKP 189 (241)
T ss_dssp S-TT-TCCSS--ESEEEEESSGGGS-----H---------------------------------HHHHHHHHHHHHHSEE
T ss_pred ccHH-hhhcc--ccceeeehhhhhc----ch---------------------------------HHHHHHHHHHHHHhCC
Confidence 8999 56677 99999999998 7 32 3445589999999999
Q ss_pred C--ceEEEEecCcCCC
Q 017439 221 G--GLLLLLTPTIRDG 234 (371)
Q Consensus 221 G--G~lvl~~~gr~~~ 234 (371)
| |++++.=.-.++.
T Consensus 190 g~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 190 GKDGRLLIIEMVLPDD 205 (241)
T ss_dssp CTTEEEEEEEEEECSS
T ss_pred CCCCeEEEEeeccCCC
Confidence 9 9998877655443
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.47 E-value=0.00074 Score=68.22 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=62.1
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC----CCC--cceeee
Q 017439 65 FKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV----PLS--KKYFAT 138 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l----~~~--~~~f~~ 138 (371)
-+|+|+|||+|..++.+. + + .| ..+|+..|...--....=.++ +.. +--|..
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~-~----------~P---~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------D-K----------NP---QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred CeEEEEeccccHHHHHHH--------H-h----------CC---CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 599999999999887666 2 2 23 456777777532211111111 110 112222
Q ss_pred ccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 139 GVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 139 gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
+ ..+.. +++.++|+|+|+-.+|+.-.++. . ...++++.=.+-|
T Consensus 288 ~---D~l~~-~~~~~fDlIlsNPPfh~~~~~~~----------------------~-----------ia~~l~~~a~~~L 330 (378)
T PRK15001 288 N---NALSG-VEPFRFNAVLCNPPFHQQHALTD----------------------N-----------VAWEMFHHARRCL 330 (378)
T ss_pred c---ccccc-CCCCCEEEEEECcCcccCccCCH----------------------H-----------HHHHHHHHHHHhc
Confidence 2 22333 35678999999999998433221 0 1123566666789
Q ss_pred ccCceEEEEe
Q 017439 219 VPGGLLLLLT 228 (371)
Q Consensus 219 ~pGG~lvl~~ 228 (371)
+|||.++++.
T Consensus 331 kpGG~L~iV~ 340 (378)
T PRK15001 331 KINGELYIVA 340 (378)
T ss_pred ccCCEEEEEE
Confidence 9999999985
No 70
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.41 E-value=0.00059 Score=52.73 Aligned_cols=99 Identities=23% Similarity=0.258 Sum_probs=60.1
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhh---hcCCCCcceeeeccCC
Q 017439 66 KIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLF---KSVPLSKKYFATGVPG 142 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF---~~l~~~~~~f~~gvpg 142 (371)
+|+|+|||.|.++..+.. . . ..+++..|+..+-....- ......+-.|..+.
T Consensus 1 ~ildig~G~G~~~~~~~~-------~------------~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 55 (107)
T cd02440 1 RVLDLGCGTGALALALAS-------G------------P----GARVTGVDISPVALELARKAAAALLADNVEVLKGD-- 55 (107)
T ss_pred CeEEEcCCccHHHHHHhc-------C------------C----CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcC--
Confidence 589999999998877662 0 1 225667776554433222 11111112222222
Q ss_pred Cccccc-CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccC
Q 017439 143 SFHGRL-FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPG 221 (371)
Q Consensus 143 SFy~rL-fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 221 (371)
+.+.. .+.+++|+++++..+++. + .+...+++.-.+-|+||
T Consensus 56 -~~~~~~~~~~~~d~i~~~~~~~~~---~----------------------------------~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 56 -AEELPPEADESFDVIISDPPLHHL---V----------------------------------EDLARFLEEARRLLKPG 97 (107)
T ss_pred -hhhhccccCCceEEEEEccceeeh---h----------------------------------hHHHHHHHHHHHHcCCC
Confidence 22222 366789999999999985 1 23344677777788999
Q ss_pred ceEEEE
Q 017439 222 GLLLLL 227 (371)
Q Consensus 222 G~lvl~ 227 (371)
|.+++.
T Consensus 98 g~~~~~ 103 (107)
T cd02440 98 GVLVLT 103 (107)
T ss_pred CEEEEE
Confidence 999876
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.40 E-value=0.00033 Score=69.84 Aligned_cols=104 Identities=12% Similarity=0.210 Sum_probs=63.7
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC--cceeeeccCC
Q 017439 65 FKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS--KKYFATGVPG 142 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~--~~~f~~gvpg 142 (371)
-+|+|+|||+|..++.+. + + .| ..+|...|....--...=.++... ..-+. ++
T Consensus 198 g~VLDlGCG~G~ls~~la--------~-~----------~p---~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~---~~ 252 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLA--------R-H----------SP---KIRLTLSDVSAAALESSRATLAANGLEGEVF---AS 252 (342)
T ss_pred CeEEEeccCcCHHHHHHH--------H-h----------CC---CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE---Ec
Confidence 489999999999887666 2 1 23 446777777532222111111100 11121 22
Q ss_pred CcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 143 SFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
..+.. .++++|+++|+-.+||.-..- ..+...|++.=++-|+|||
T Consensus 253 D~~~~--~~~~fDlIvsNPPFH~g~~~~---------------------------------~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 253 NVFSD--IKGRFDMIISNPPFHDGIQTS---------------------------------LDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred ccccc--cCCCccEEEECCCccCCcccc---------------------------------HHHHHHHHHHHHHhcCcCC
Confidence 23332 367899999999999822110 1345668888889999999
Q ss_pred eEEEEe
Q 017439 223 LLLLLT 228 (371)
Q Consensus 223 ~lvl~~ 228 (371)
.|+++.
T Consensus 298 ~L~iVa 303 (342)
T PRK09489 298 ELRIVA 303 (342)
T ss_pred EEEEEE
Confidence 998876
No 72
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.37 E-value=0.0017 Score=53.56 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.2
Q ss_pred HHHHHHHhhcccCceEEEEec
Q 017439 209 SFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
.+++.-.+.|+|||++++.+.
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEec
Confidence 578888899999999999863
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.35 E-value=0.0013 Score=59.32 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.3
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
...+|+|+|||+|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 34689999999999998877
No 74
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.33 E-value=0.0054 Score=60.56 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=23.1
Q ss_pred cccCCHHHHHHHhhcCCceEEEEEEEeec
Q 017439 274 MYYPFLGELMGHIKRNKNFSIEIMNTFTH 302 (371)
Q Consensus 274 ~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~ 302 (371)
.|+.+.+|+++++++.| |+|...+....
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~~ 302 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTAT 302 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEeec
Confidence 46679999999999987 99988776643
No 75
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.33 E-value=0.001 Score=63.42 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=70.9
Q ss_pred CCceEEeeecCCCCcccHHHHHH--------------HHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhh
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQN--------------IIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFK 127 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~ 127 (371)
+..-+|+|+|||.|..++.+.+. ..+..++ ....+. .+ . .|+|+.-|+ +...
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~-nv~ln~-l~---~---ri~v~~~Di-----~~~~- 108 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQR-NVALNP-LE---E---RIQVIEADI-----KEFL- 108 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHH-HHHhCc-ch---h---ceeEehhhH-----HHhh-
Confidence 44899999999999999998853 1222222 111100 01 1 345554442 3222
Q ss_pred cCCCCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhH
Q 017439 128 SVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDI 207 (371)
Q Consensus 128 ~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~ 207 (371)
+-.+..++|+|+|+ |+ |++-... ..+.+..+-.+.+..-++
T Consensus 109 -------------------~~~~~~~fD~Ii~N---------PP---------yf~~~~~--~~~~~~~~~Ar~e~~~~l 149 (248)
T COG4123 109 -------------------KALVFASFDLIICN---------PP---------YFKQGSR--LNENPLRAIARHEITLDL 149 (248)
T ss_pred -------------------hcccccccCEEEeC---------CC---------CCCCccc--cCcChhhhhhhhhhcCCH
Confidence 22334489999986 43 2322222 223445566667778899
Q ss_pred HHHHHHHHhhcccCceEEEEe
Q 017439 208 ESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 208 ~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
..+++.-++-|||||++.++.
T Consensus 150 e~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 150 EDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHHHHHccCCCEEEEEe
Confidence 999999999999999998887
No 76
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.33 E-value=0.0014 Score=59.86 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.0
Q ss_pred HHHHHHHHhhcccCceEEEEe
Q 017439 208 ESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 208 ~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
..|++..++-|+|||++++..
T Consensus 125 ~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 125 SDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHHHhcCCCeEEEEEe
Confidence 347888889999999999885
No 77
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.32 E-value=0.0023 Score=59.42 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=46.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceee---e
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFA---T 138 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~---~ 138 (371)
++..+|||+|||++..+- ++.. .+.|+-=||...+ ..+-+ +
T Consensus 71 ~~~~viaD~GCGdA~la~--------~~~~-----------------~~~V~SfDLva~n-----------~~Vtacdia 114 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAK--------AVPN-----------------KHKVHSFDLVAPN-----------PRVTACDIA 114 (219)
T ss_dssp -TTS-EEEES-TT-HHHH--------H--S--------------------EEEEESS-SS-----------TTEEES-TT
T ss_pred CCCEEEEECCCchHHHHH--------hccc-----------------CceEEEeeccCCC-----------CCEEEecCc
Confidence 456899999999987762 2222 2245555655432 11221 2
Q ss_pred ccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 139 GVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 139 gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
-|| ++++|+|+++.+-||.= .||..||+-=.+=|
T Consensus 115 ~vP-------L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvL 148 (219)
T PF05148_consen 115 NVP-------LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVL 148 (219)
T ss_dssp S-S---------TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHE
T ss_pred cCc-------CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHhee
Confidence 333 48899999988877653 46777888888999
Q ss_pred ccCceEEEEe
Q 017439 219 VPGGLLLLLT 228 (371)
Q Consensus 219 ~pGG~lvl~~ 228 (371)
||||.|.+.=
T Consensus 149 K~~G~L~IAE 158 (219)
T PF05148_consen 149 KPGGILKIAE 158 (219)
T ss_dssp EEEEEEEEEE
T ss_pred ccCcEEEEEE
Confidence 9999997764
No 78
>PHA03411 putative methyltransferase; Provisional
Probab=97.30 E-value=0.0021 Score=62.23 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=68.8
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGS 143 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgS 143 (371)
.-+|+|+|||+|..++.+. . +. + ..+|+..|+-..- -.+.+..-+ +.-+..+.
T Consensus 65 ~grVLDLGcGsGilsl~la--------~-r~----------~---~~~V~gVDisp~a-l~~Ar~n~~-~v~~v~~D--- 117 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCML--------H-RC----------K---PEKIVCVELNPEF-ARIGKRLLP-EAEWITSD--- 117 (279)
T ss_pred CCeEEEcCCCCCHHHHHHH--------H-hC----------C---CCEEEEEECCHHH-HHHHHHhCc-CCEEEECc---
Confidence 3589999999998777665 2 11 1 2356777775532 333332211 12233333
Q ss_pred cccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHh--hHHHHHHHHHhhcccC
Q 017439 144 FHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKN--DIESFLNARAQELVPG 221 (371)
Q Consensus 144 Fy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~--D~~~FL~~Ra~EL~pG 221 (371)
+. .+.++.++|+++|+-.++++..... .+ ..+|..|.. -.+ .+..||+..+.-|+|+
T Consensus 118 ~~-e~~~~~kFDlIIsNPPF~~l~~~d~--~~--~~~~~GG~~----------------g~~~l~~~~~l~~v~~~L~p~ 176 (279)
T PHA03411 118 VF-EFESNEKFDVVISNPPFGKINTTDT--KD--VFEYTGGEF----------------EFKVMTLGQKFADVGYFIVPT 176 (279)
T ss_pred hh-hhcccCCCcEEEEcCCccccCchhh--hh--hhhhccCcc----------------ccccccHHHHHhhhHheecCC
Confidence 32 2234678999999999999542111 11 012221110 001 2567999999999999
Q ss_pred ceEEEEecCc
Q 017439 222 GLLLLLTPTI 231 (371)
Q Consensus 222 G~lvl~~~gr 231 (371)
|...+...|+
T Consensus 177 G~~~~~yss~ 186 (279)
T PHA03411 177 GSAGFAYSGR 186 (279)
T ss_pred ceEEEEEecc
Confidence 9888876554
No 79
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.29 E-value=0.0015 Score=60.59 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=17.0
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
...+|+|+|||+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34799999999999997666
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.28 E-value=0.0014 Score=58.52 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=63.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC--Ccceeeecc
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL--SKKYFATGV 140 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gv 140 (371)
..-+|+|+|||+|..++.+. + + .| ...|+..|.-.+-....=+++.. -.+ +..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la--------~-~----------~~---~~~v~~vDi~~~a~~~a~~n~~~n~~~~--v~~~ 86 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA--------K-R----------GP---DAKVTAVDINPDALELAKRNAERNGLEN--VEVV 86 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH--------H-T----------ST---CEEEEEEESBHHHHHHHHHHHHHTTCTT--EEEE
T ss_pred cCCeEEEecCChHHHHHHHH--------H-h----------CC---CCEEEEEcCCHHHHHHHHHHHHhcCccc--cccc
Confidence 34679999999999999877 2 1 22 34567777665544433333321 111 2222
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
....++.+ +++++|+++|+--+|+-... -..-+..|++.=.+-|+|
T Consensus 87 ~~d~~~~~-~~~~fD~Iv~NPP~~~~~~~---------------------------------~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 87 QSDLFEAL-PDGKFDLIVSNPPFHAGGDD---------------------------------GLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp ESSTTTTC-CTTCEEEEEE---SBTTSHC---------------------------------HHHHHHHHHHHHHHHEEE
T ss_pred cccccccc-cccceeEEEEccchhccccc---------------------------------chhhHHHHHHHHHHhccC
Confidence 23445544 37899999998554441110 012234577777899999
Q ss_pred CceEEEEe
Q 017439 221 GGLLLLLT 228 (371)
Q Consensus 221 GG~lvl~~ 228 (371)
||.++++.
T Consensus 133 ~G~l~lv~ 140 (170)
T PF05175_consen 133 GGRLFLVI 140 (170)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEe
Confidence 99998866
No 81
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.26 E-value=0.00087 Score=59.37 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEe
Q 017439 149 FPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 149 fP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
++++++|++++++++||+.+ ...+|+.-++-|||||++++.-
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD--------------------------------------RLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred CCCCCeeEEEecchhhcCCC--------------------------------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 47889999999999999632 1236777788999999999887
Q ss_pred cCcCC
Q 017439 229 PTIRD 233 (371)
Q Consensus 229 ~gr~~ 233 (371)
.+.++
T Consensus 82 ~~~~~ 86 (160)
T PLN02232 82 FNKSN 86 (160)
T ss_pred CCCCC
Confidence 76644
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.22 E-value=0.00086 Score=61.78 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.6
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
..+|+|+|||+|..|..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCEEEEECcCccHHHHHHH
Confidence 4689999999999997766
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.16 E-value=0.0025 Score=58.68 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=16.5
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
...+|+|+|||+|..|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCEEEEECCCccHHHHHHH
Confidence 45799999999999987543
No 84
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.14 E-value=0.0028 Score=57.33 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhhcccCceEEEEec
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
++...+|+.-.+-|+|||++++...
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3566788888999999999999753
No 85
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.12 E-value=0.0034 Score=56.19 Aligned_cols=123 Identities=14% Similarity=0.109 Sum_probs=63.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC-cceeeeccCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS-KKYFATGVPG 142 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~-~~~f~~gvpg 142 (371)
.-+|+|+|||+|..++.+... . . +++..|+-..--...=+.+... .++ .-+-+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-------------------~----~-~v~~vD~s~~~~~~a~~~~~~~~~~~--~~~~~ 73 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-------------------G----K-CILTTDINPFAVKELRENAKLNNVGL--DVVMT 73 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-------------------C----C-EEEEEECCHHHHHHHHHHHHHcCCce--EEEEc
Confidence 357999999999988876621 1 1 3455554332211111111000 011 11123
Q ss_pred CcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 143 SFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
.+++. +.+++|+++|+..+|.....+.. .+....++.. .. .-...+..||+.-.+-|+|||
T Consensus 74 d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~-------~~---------~~~~~~~~~l~~~~~~Lk~gG 134 (179)
T TIGR00537 74 DLFKG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDG-------GK---------DGRKVIDRFLDELPEILKEGG 134 (179)
T ss_pred ccccc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhc-------CC---------chHHHHHHHHHhHHHhhCCCC
Confidence 33332 24589999999988865432210 0000000000 00 001224568888888999999
Q ss_pred eEEEEecCc
Q 017439 223 LLLLLTPTI 231 (371)
Q Consensus 223 ~lvl~~~gr 231 (371)
++++...+.
T Consensus 135 ~~~~~~~~~ 143 (179)
T TIGR00537 135 RVQLIQSSL 143 (179)
T ss_pred EEEEEEecc
Confidence 999987544
No 86
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.11 E-value=0.004 Score=57.68 Aligned_cols=178 Identities=17% Similarity=0.162 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecC
Q 017439 37 VNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFND 116 (371)
Q Consensus 37 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nD 116 (371)
.++.++-|.+.+++.++ .... +|+++|||||--+..+. . + .| .++.-=+|
T Consensus 7 aeRNk~pIl~vL~~~l~-------~~~~-~vLEiaSGtGqHa~~FA--------~-~----------lP---~l~WqPSD 56 (204)
T PF06080_consen 7 AERNKDPILEVLKQYLP-------DSGT-RVLEIASGTGQHAVYFA--------Q-A----------LP---HLTWQPSD 56 (204)
T ss_pred hhhCHhHHHHHHHHHhC-------ccCc-eEEEEcCCccHHHHHHH--------H-H----------CC---CCEEcCCC
Confidence 45556666677777553 2222 89999999998877666 2 1 45 56777888
Q ss_pred CCcCchhhhhhcCCCC------cceee--eccCCCccc-ccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCcee
Q 017439 117 HSNNDFNTLFKSVPLS------KKYFA--TGVPGSFHG-RLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHIL 187 (371)
Q Consensus 117 lp~NDFn~lF~~l~~~------~~~f~--~gvpgSFy~-rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~ 187 (371)
...+-+.++-.-+... .+..+ ...+-+--. --++.+++|.++|.+.+|- .|-...
T Consensus 57 ~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI---~p~~~~------------- 120 (204)
T PF06080_consen 57 PDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHI---SPWSAV------------- 120 (204)
T ss_pred CChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHh---cCHHHH-------------
Confidence 8888877765433210 11111 110000000 0126789999999999998 443211
Q ss_pred ecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhh
Q 017439 188 CSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKV 267 (371)
Q Consensus 188 ~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~ 267 (371)
..+++.=++-|++||.|++.-+-..++...++. + ..+-..|++
T Consensus 121 --------------------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N----~~FD~sLr~------------ 163 (204)
T PF06080_consen 121 --------------------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-N----AAFDASLRS------------ 163 (204)
T ss_pred --------------------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-H----HHHHHHHhc------------
Confidence 236777789999999999988766666443321 1 233344542
Q ss_pred cccCcccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 268 DSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 268 d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
-+--|-.|..+++.++-.+.| ++++.....
T Consensus 164 --rdp~~GiRD~e~v~~lA~~~G-L~l~~~~~M 193 (204)
T PF06080_consen 164 --RDPEWGIRDIEDVEALAAAHG-LELEEDIDM 193 (204)
T ss_pred --CCCCcCccCHHHHHHHHHHCC-CccCccccc
Confidence 122244788999999999887 766554433
No 87
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.11 E-value=0.0021 Score=65.08 Aligned_cols=110 Identities=24% Similarity=0.355 Sum_probs=65.5
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC--Ccc-eeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL--SKK-YFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~--~~~-~f~~gv 140 (371)
.-.++|+|||+|..++.+... .| +..++.-|.-..--..+-+.+.. -.+ .++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~-------------------~P---~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D 180 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKN-------------------NP---NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD 180 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHh-------------------CC---CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 358999999999998877721 22 33455555443333333222211 112 233333
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
..-+. ..+|++|+|.+++++...|..+ +. .++ -...||+.-++-|+|
T Consensus 181 A~~ll-~~~~~~s~D~I~lnFPdPW~Kk-rH------------RRl-------------------v~~~fL~e~~RvLkp 227 (390)
T PRK14121 181 ARLLL-ELLPSNSVEKIFVHFPVPWDKK-PH------------RRV-------------------ISEDFLNEALRVLKP 227 (390)
T ss_pred HHHhh-hhCCCCceeEEEEeCCCCcccc-ch------------hhc-------------------cHHHHHHHHHHHcCC
Confidence 22222 4579999999999988888222 10 001 024578888899999
Q ss_pred CceEEEEe
Q 017439 221 GGLLLLLT 228 (371)
Q Consensus 221 GG~lvl~~ 228 (371)
||.+.+.+
T Consensus 228 GG~l~l~T 235 (390)
T PRK14121 228 GGTLELRT 235 (390)
T ss_pred CcEEEEEE
Confidence 99998876
No 88
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.10 E-value=0.0013 Score=60.94 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=17.2
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..-+|+|+|||+|.+|..+.
T Consensus 77 ~~~~VLDiG~GsG~~a~~la 96 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA 96 (215)
T ss_pred CcCEEEEECCCccHHHHHHH
Confidence 34699999999999998766
No 89
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.08 E-value=0.00094 Score=66.35 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=62.6
Q ss_pred CceEEeeecCCCCcccHHHHH-------------HHHHHHHhhhhcccC---CCCCCCCCcceeEEEecCCCcCchhhhh
Q 017439 63 STFKIADLGCSTGPNTFIAMQ-------------NIIEAIELIKYQDDC---ECEHDNPSGLEFQVFFNDHSNNDFNTLF 126 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~-------------~ii~~i~~~~~~~~~---~~~~~~p~~~ei~v~~nDlp~NDFn~lF 126 (371)
...+|+|||||-|.=...... ..|+..++ +|.... ... .+ .+.+.-.+.+.++|+.-
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~-Ry~~~~~~~~~~--~~---~~~f~a~f~~~D~f~~~- 134 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARE-RYKQLKKRNNSK--QY---RFDFIAEFIAADCFSES- 134 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHH-HHHHHHTSTT-H--TS---EECCEEEEEESTTCCSH-
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHH-HHHHhccccccc--cc---cccchhheeccccccch-
Confidence 679999999999997766553 44555555 662210 000 11 11122222233333222
Q ss_pred hcCCCCcceeeeccCCCcccccCCC--CceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHH
Q 017439 127 KSVPLSKKYFATGVPGSFHGRLFPE--SSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFK 204 (371)
Q Consensus 127 ~~l~~~~~~f~~gvpgSFy~rLfP~--~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~ 204 (371)
-...+++ ..+|+|-+-.|||..=.. +
T Consensus 135 ------------------l~~~~~~~~~~FDvVScQFalHY~Fes----------------------------------e 162 (331)
T PF03291_consen 135 ------------------LREKLPPRSRKFDVVSCQFALHYAFES----------------------------------E 162 (331)
T ss_dssp ------------------HHCTSSSTTS-EEEEEEES-GGGGGSS----------------------------------H
T ss_pred ------------------hhhhccccCCCcceeehHHHHHHhcCC----------------------------------H
Confidence 1222333 589999999999993221 2
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecC
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPT 230 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~g 230 (371)
+-.++||+.-++-|+|||.++.+++-
T Consensus 163 ~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 163 EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 34466999999999999999999974
No 90
>PRK04266 fibrillarin; Provisional
Probab=96.98 E-value=0.01 Score=55.79 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.6
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
..+|+|+|||+|..|+.+.
T Consensus 73 g~~VlD~G~G~G~~~~~la 91 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVS 91 (226)
T ss_pred CCEEEEEccCCCHHHHHHH
Confidence 4699999999999988766
No 91
>PRK14967 putative methyltransferase; Provisional
Probab=96.95 E-value=0.0027 Score=59.09 Aligned_cols=123 Identities=16% Similarity=0.141 Sum_probs=63.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC--CCcceeeeccC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP--LSKKYFATGVP 141 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~--~~~~~f~~gvp 141 (371)
.-+|+|+|||+|..++.+.. .. .-+++..|....--...=+.+. ..+-.+..
T Consensus 37 ~~~vLDlGcG~G~~~~~la~----------~~-------------~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~--- 90 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA----------AG-------------AGSVTAVDISRRAVRSARLNALLAGVDVDVRR--- 90 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH----------cC-------------CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---
Confidence 36899999999998887652 10 0135555554432211111110 01111222
Q ss_pred CCcccccCCCCceeEEEecCCccccCCCCccccCC-CCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhccc
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNS-NSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVP 220 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~-~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~p 220 (371)
+.+.. .+|++++|+++++--.+..+... ..+. ...+|+.| .. -..++..|++.=.+-|+|
T Consensus 91 ~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~------~~----------~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 91 GDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG------PD----------GRAVLDRLCDAAPALLAP 151 (223)
T ss_pred Cchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC------Cc----------HHHHHHHHHHHHHHhcCC
Confidence 34444 35778999999985443322111 0000 00011110 00 123456788878889999
Q ss_pred CceEEEEecCc
Q 017439 221 GGLLLLLTPTI 231 (371)
Q Consensus 221 GG~lvl~~~gr 231 (371)
||++++.....
T Consensus 152 gG~l~~~~~~~ 162 (223)
T PRK14967 152 GGSLLLVQSEL 162 (223)
T ss_pred CcEEEEEEecc
Confidence 99999776443
No 92
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.94 E-value=0.0019 Score=60.37 Aligned_cols=125 Identities=17% Similarity=0.198 Sum_probs=66.5
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC---CCcceeeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP---LSKKYFATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~---~~~~~f~~g 139 (371)
+..+|+|+|||+|..++.+.. . .| ..+++..|.-..-....=+.+. ..+--+..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~---------~----------~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~- 143 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK---------E----------RP---DARVTAVDISPEALAVARKNAARLGLDNVTFLQ- 143 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH---------H----------CC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-
Confidence 346899999999988887762 1 11 2356666654433322211111 11111222
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCC---CccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHh
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKI---PKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQ 216 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~v---P~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 216 (371)
+.+.+ .+|++++|+++|+--.+..+.. +..+... .+.... .-....-.++..|++.-.+
T Consensus 144 --~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~--------------e~~~~~-~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 144 --SDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH--------------EPRLAL-FGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred --Cchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhc--------------CCHHHH-cCCCcHHHHHHHHHHHHHH
Confidence 23333 3578899999997655543221 1111100 000000 0001123556778999899
Q ss_pred hcccCceEEEEe
Q 017439 217 ELVPGGLLLLLT 228 (371)
Q Consensus 217 EL~pGG~lvl~~ 228 (371)
.|+|||.+++..
T Consensus 206 ~L~~gG~~~~~~ 217 (251)
T TIGR03534 206 LLKPGGWLLLEI 217 (251)
T ss_pred hcccCCEEEEEE
Confidence 999999999864
No 93
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.92 E-value=0.0042 Score=50.98 Aligned_cols=24 Identities=46% Similarity=0.773 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhcccCceEEEEec
Q 017439 206 DIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
+...|++.-.+-|+|||.+++.++
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 566789999999999999999864
No 94
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.89 E-value=0.0045 Score=56.76 Aligned_cols=94 Identities=17% Similarity=0.211 Sum_probs=64.5
Q ss_pred cCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEE
Q 017439 148 LFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 148 LfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~ 227 (371)
-||++|+|.++-+-+|+=+.+ |..+.. +-|+.|.+.+++
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~-P~~vL~----------------------------------------EmlRVgr~~IVs 108 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRR-PDEVLE----------------------------------------EMLRVGRRAIVS 108 (193)
T ss_pred hCCCCCccEEehHhHHHhHhH-HHHHHH----------------------------------------HHHHhcCeEEEE
Confidence 379999999999999998765 654332 457889999999
Q ss_pred ecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccc------cCCHHHHHHHhhcCCceEEEEEEEee
Q 017439 228 TPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMY------YPFLGELMGHIKRNKNFSIEIMNTFT 301 (371)
Q Consensus 228 ~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y------~ps~eE~~~~i~~~g~F~I~~~e~~~ 301 (371)
|+.-. .|.. -..|.-.|..+..+ .+..+|| +-|..++++..++.| ++|++-..+.
T Consensus 109 FPNFg------------~W~~----R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 109 FPNFG------------HWRN----RLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVFLD 169 (193)
T ss_pred ecChH------------HHHH----HHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEEEc
Confidence 95422 2332 12334457665543 3344444 569999999999987 8888777663
No 95
>PTZ00146 fibrillarin; Provisional
Probab=96.89 E-value=0.012 Score=57.37 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.7
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
-.+|+|+|||+|..|..+.
T Consensus 133 G~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred CCEEEEeCCcCCHHHHHHH
Confidence 3689999999999888777
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.87 E-value=0.0098 Score=57.73 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhhcccCceEEEEec
Q 017439 206 DIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
....|++.-.+-|+|||++++.+.
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEC
Confidence 345688888889999999998874
No 97
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.81 E-value=0.003 Score=58.97 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=77.8
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhh-cCC----CCccee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFK-SVP----LSKKYF 136 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~-~l~----~~~~~f 136 (371)
.+.-+.+|.|||-|+-|-.++...-+ +|=+.| |.-.|-.--+ .+. .-.++|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~-----------------------~VDlVE-p~~~Fl~~a~~~l~~~~~~v~~~~ 109 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD-----------------------EVDLVE-PVEKFLEQAKEYLGKDNPRVGEFY 109 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S-----------------------EEEEEE-S-HHHHHHHHHHTCCGGCCEEEEE
T ss_pred CCcceEEecccccchhHHHHHHHhcC-----------------------EeEEec-cCHHHHHHHHHHhcccCCCcceEE
Confidence 46899999999999999766521100 010111 1111111111 111 113577
Q ss_pred eeccCCCcccccCCC-CceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 137 ATGVPGSFHGRLFPE-SSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 137 ~~gvpgSFy~rLfP~-~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
..|. +..-|+ ++.|+||.-||+-.|++ +|+-.||+.-.
T Consensus 110 ~~gL-----Q~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~RCk 148 (218)
T PF05891_consen 110 CVGL-----QDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLKRCK 148 (218)
T ss_dssp ES-G-----GG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHHHHH
T ss_pred ecCH-----hhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHHHHH
Confidence 7775 344465 79999999887766443 79999999999
Q ss_pred hhcccCceEEEEe-cCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEE
Q 017439 216 QELVPGGLLLLLT-PTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSI 294 (371)
Q Consensus 216 ~EL~pGG~lvl~~-~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I 294 (371)
+.|+|||.+|+== ....+.+.... .++ ...||.+.++.++++.| ++|
T Consensus 149 ~~L~~~G~IvvKEN~~~~~~~~~D~------------------~Ds-------------SvTRs~~~~~~lF~~AG-l~~ 196 (218)
T PF05891_consen 149 QALKPNGVIVVKENVSSSGFDEFDE------------------EDS-------------SVTRSDEHFRELFKQAG-LRL 196 (218)
T ss_dssp HHEEEEEEEEEEEEEESSSEEEEET------------------TTT-------------EEEEEHHHHHHHHHHCT--EE
T ss_pred HhCcCCcEEEEEecCCCCCCcccCC------------------ccC-------------eeecCHHHHHHHHHHcC-CEE
Confidence 9999999888732 22111101110 011 22688999999999987 988
Q ss_pred EEEEEe
Q 017439 295 EIMNTF 300 (371)
Q Consensus 295 ~~~e~~ 300 (371)
.+.+.-
T Consensus 197 v~~~~Q 202 (218)
T PF05891_consen 197 VKEEKQ 202 (218)
T ss_dssp EEEEE-
T ss_pred EEeccc
Confidence 877754
No 98
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.73 E-value=0.0011 Score=68.40 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=18.6
Q ss_pred CCCceEEeeecCCCCcccHHHH
Q 017439 61 TSSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
....-+++|+|||+|.....++
T Consensus 115 ~g~iR~~LDvGcG~aSF~a~l~ 136 (506)
T PF03141_consen 115 GGGIRTALDVGCGVASFGAYLL 136 (506)
T ss_pred CCceEEEEeccceeehhHHHHh
Confidence 4667788999999999888777
No 99
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.64 E-value=0.053 Score=53.90 Aligned_cols=199 Identities=15% Similarity=0.148 Sum_probs=117.6
Q ss_pred ccceec-ccCCCCCCchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHH
Q 017439 11 SPEAYP-MVGGDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAI 89 (371)
Q Consensus 11 ~~~~~~-M~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i 89 (371)
..++.. |-||-+..+|.-+-..|+.... ...++.+.+.+.+. . ....-..+|.|-|.|..+-.++
T Consensus 131 ~~~~~G~~l~~~~~~~~~~~~~~~~sm~~-l~~~~~~~il~~~~-G-----f~~v~~avDvGgGiG~v~k~ll------- 196 (342)
T KOG3178|consen 131 FATAHGMMLGGYGGADERFSKDFNGSMSF-LSTLVMKKILEVYT-G-----FKGVNVAVDVGGGIGRVLKNLL------- 196 (342)
T ss_pred CccccchhhhhhcccccccHHHHHHHHHH-HHHHHHHhhhhhhc-c-----cccCceEEEcCCcHhHHHHHHH-------
Confidence 344566 6677666666555555555433 23333333322221 1 2357789999999999888777
Q ss_pred HhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCCcccccCCCCceeEEEecCCcc-ccCC
Q 017439 90 ELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGSFHGRLFPESSLHVAHTSNALP-WLSK 168 (371)
Q Consensus 90 ~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alH-WLS~ 168 (371)
. + -| .|..+-=|+|.=.-..-+-. |. +--+.|-++.- .|+.- ++|--|+|| |
T Consensus 197 -~-~----------fp---~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~-~P~~d--aI~mkWiLhdw--- 249 (342)
T KOG3178|consen 197 -S-K----------YP---HIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD-TPKGD--AIWMKWILHDW--- 249 (342)
T ss_pred -H-h----------CC---CCceeecCHHHHHhhhhhhc-CC-----cceeccccccc-CCCcC--eEEEEeecccC---
Confidence 2 2 23 44455455554331111100 11 45566677777 77765 899888887 6
Q ss_pred CCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCC--CCCcchH
Q 017439 169 IPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFS--TPEGTNF 246 (371)
Q Consensus 169 vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~--~~~~~~~ 246 (371)
+ | +|...||+.-.+-|+|||.+++.=.-.+.+...+. .......
T Consensus 250 -t----D-----------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~ 295 (342)
T KOG3178|consen 250 -T----D-----------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDM 295 (342)
T ss_pred -C----h-----------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehh
Confidence 3 2 78889999999999999998886543322211111 1112234
Q ss_pred HHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEEeec
Q 017439 247 DYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNTFTH 302 (371)
Q Consensus 247 ~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~~~~ 302 (371)
+++..+.. .-|+ -++.+|++..+.++| |.+-.+-..+.
T Consensus 296 d~lm~~~~---~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~~~~ 333 (342)
T KOG3178|consen 296 DLLMLTQT---SGGK--------------ERTLKEFQALLPEEG-FPVCMVALTAY 333 (342)
T ss_pred HHHHHHHh---ccce--------------eccHHHHHhcchhhc-CceeEEEeccC
Confidence 44444443 2254 589999999999987 87766655443
No 100
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.54 E-value=0.027 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=18.1
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
.+--++.|+|||||.-|+..+
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH
Confidence 334599999999999999888
No 101
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.50 E-value=0.011 Score=55.94 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=44.7
Q ss_pred HHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchH--HHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhh
Q 017439 210 FLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNF--DYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIK 287 (371)
Q Consensus 210 FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~--~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~ 287 (371)
|+++-++-+||||.|++...-|.-. .+.. -..+-.++ ++=.|.-+-++ +-.++|+...+.
T Consensus 143 ~~~~c~~lvkP~G~lf~STinrt~k--------a~~~~i~~ae~vl~-~vP~gTH~~~k---------~irp~El~~~~~ 204 (243)
T COG2227 143 FLRACAKLVKPGGILFLSTINRTLK--------AYLLAIIGAEYVLR-IVPKGTHDYRK---------FIKPAELIRWLL 204 (243)
T ss_pred HHHHHHHHcCCCcEEEEeccccCHH--------HHHHHHHHHHHHHH-hcCCcchhHHH---------hcCHHHHHHhcc
Confidence 8999999999999999999876421 1111 11222333 44555443333 456888888888
Q ss_pred cCCceEEEEEEEe
Q 017439 288 RNKNFSIEIMNTF 300 (371)
Q Consensus 288 ~~g~F~I~~~e~~ 300 (371)
..+ +++....-+
T Consensus 205 ~~~-~~~~~~~g~ 216 (243)
T COG2227 205 GAN-LKIIDRKGL 216 (243)
T ss_pred cCC-ceEEeecce
Confidence 755 665555433
No 102
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.36 E-value=0.0078 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhhcccCceEEEEec
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
.||..|++--.+=|++||.+.+.=.
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEeh
Confidence 4677799999999999999987643
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.35 E-value=0.016 Score=57.01 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcccCceEEEEec
Q 017439 208 ESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 208 ~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
..|++.-.+-|+|||++++.+.
T Consensus 243 ~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 243 RRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred HHHHHHHHHhcCCCCEEEEEEC
Confidence 4578887888999999998763
No 104
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.25 E-value=0.05 Score=53.79 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhcccCceEEEEecCc
Q 017439 207 IESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
...+|+.=++-|+|||++++.++..
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCC
Confidence 3557888788999999999998754
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.23 E-value=0.022 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhhcccCceEEEEec
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
.+...+++.-.+-|+|||.+++.+.
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEC
Confidence 3556688888889999999998884
No 106
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.21 E-value=0.056 Score=55.44 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=66.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC--cceeeeccC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS--KKYFATGVP 141 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~--~~~f~~gvp 141 (371)
.-+|+|+|||+|.-|+.+.+. .. .-.|+..|.-..--..+=+.+... ...+..+..
T Consensus 245 g~~VLDlgaG~G~~t~~la~~---------~~-------------~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILEL---------AP-------------QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHH---------cC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 468999999999999877732 10 113555555443322222222110 112333332
Q ss_pred CCcccccCCCCceeEEEecC---CccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 142 GSFHGRLFPESSLHVAHTSN---ALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~---alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
.. ....++++++|.+++.. ...-+.+.|+... . ..++..+ .+.+....+|+.=.+-|
T Consensus 303 ~~-~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-------~--------~~~~~l~----~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 303 RD-PAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW-------L--------RRPEDIA----ALAALQSEILDALWPLL 362 (427)
T ss_pred cc-chhhcccCCCCEEEECCCCCcccccccCccccc-------c--------CCHHHHH----HHHHHHHHHHHHHHHhc
Confidence 21 11234567899998532 2222233343211 0 1122222 23345566888888999
Q ss_pred ccCceEEEEecCc
Q 017439 219 VPGGLLLLLTPTI 231 (371)
Q Consensus 219 ~pGG~lvl~~~gr 231 (371)
+|||+|+..++..
T Consensus 363 kpGG~lvystcs~ 375 (427)
T PRK10901 363 KPGGTLLYATCSI 375 (427)
T ss_pred CCCCEEEEEeCCC
Confidence 9999999888643
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.21 E-value=0.033 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHhhcccCceEEEEe
Q 017439 205 NDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
+++..|++.-.+-|+|||.+++..
T Consensus 215 ~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 215 DFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 456678888889999999999865
No 108
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.19 E-value=0.014 Score=56.77 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=15.2
Q ss_pred eEEeeecCCCCcccHHHH
Q 017439 65 FKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~ 82 (371)
-+|+|+|||+|..++.+.
T Consensus 161 ~~VLDvGcGsG~lai~aa 178 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAAL 178 (288)
T ss_pred CEEEEeCCChhHHHHHHH
Confidence 689999999998876554
No 109
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.14 E-value=0.06 Score=48.89 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhhcccCceEEEEecC
Q 017439 206 DIESFLNARAQELVPGGLLLLLTPT 230 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~g 230 (371)
++..+|+.-.+-|+|||++++....
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 3455677777789999999998743
No 110
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.031 Score=52.01 Aligned_cols=49 Identities=29% Similarity=0.495 Sum_probs=33.0
Q ss_pred eeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEec
Q 017439 154 LHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 154 vd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
+++.+---+..|=..-| .| .|+++.+.+++-+++.+ -|++||+||+-..
T Consensus 122 V~v~~gDG~~G~~~~aP---yD---------~I~Vtaaa~~vP~~Ll~---------------QL~~gGrlv~PvG 170 (209)
T COG2518 122 VTVRHGDGSKGWPEEAP---YD---------RIIVTAAAPEVPEALLD---------------QLKPGGRLVIPVG 170 (209)
T ss_pred eEEEECCcccCCCCCCC---cC---------EEEEeeccCCCCHHHHH---------------hcccCCEEEEEEc
Confidence 56666666677733333 22 37777766666666664 4999999999886
No 111
>PRK00811 spermidine synthase; Provisional
Probab=96.04 E-value=0.014 Score=56.53 Aligned_cols=109 Identities=12% Similarity=0.164 Sum_probs=63.1
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhh---hhhcC-----CCCc
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNT---LFKSV-----PLSK 133 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~---lF~~l-----~~~~ 133 (371)
+++-+|+|+|||+|..+..+++ .. + .-+|...|+-.+=-.. .|..+ ...+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~----------~~---------~---~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~r 132 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK----------HP---------S---VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPR 132 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc----------CC---------C---CCEEEEEeCCHHHHHHHHHHhHHhccccccCCc
Confidence 4567999999999999887762 11 0 0134444443321111 11111 1122
Q ss_pred ceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHH
Q 017439 134 KYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNA 213 (371)
Q Consensus 134 ~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~ 213 (371)
--+..+.+..|-.+ +++++|+|++-.+-+| .|.. ..|. ..|++.
T Consensus 133 v~v~~~Da~~~l~~--~~~~yDvIi~D~~dp~---~~~~------------------------~l~t-------~ef~~~ 176 (283)
T PRK00811 133 VELVIGDGIKFVAE--TENSFDVIIVDSTDPV---GPAE------------------------GLFT-------KEFYEN 176 (283)
T ss_pred eEEEECchHHHHhh--CCCcccEEEECCCCCC---Cchh------------------------hhhH-------HHHHHH
Confidence 34566666666554 6788999999766555 1210 1111 347777
Q ss_pred HHhhcccCceEEEEe
Q 017439 214 RAQELVPGGLLLLLT 228 (371)
Q Consensus 214 Ra~EL~pGG~lvl~~ 228 (371)
-.+-|+|||.|++..
T Consensus 177 ~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 177 CKRALKEDGIFVAQS 191 (283)
T ss_pred HHHhcCCCcEEEEeC
Confidence 778999999998753
No 112
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.00 E-value=0.059 Score=55.55 Aligned_cols=124 Identities=16% Similarity=0.116 Sum_probs=72.0
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC---Ccceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL---SKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gv 140 (371)
.-+|+|+|||+|..|+.+.+ .... .-+|+..|.-..-...+=+.+.. ..-.+..+.
T Consensus 251 g~~VLDlgaG~G~kt~~la~---------~~~~------------~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~D 309 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAE---------LMQN------------RGQITAVDRYPQKLEKIRSHASALGITIIETIEGD 309 (445)
T ss_pred CCEEEEECCCCCHHHHHHHH---------HhCC------------CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 36899999999999987662 1110 12577777766554444333321 111344444
Q ss_pred CCCcccccCCCCceeEEEe----cCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHh
Q 017439 141 PGSFHGRLFPESSLHVAHT----SNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQ 216 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~S----s~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~ 216 (371)
... +.|++++|.++. +..-+|- +-|+.... .+++..+ +..++-..+|..=++
T Consensus 310 a~~----~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~---------------~~~~~~~----~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 310 ARS----FSPEEQPDAILLDAPCTGTGVLG-RRAELRWK---------------LTPEKLA----ELVGLQAELLDHAAS 365 (445)
T ss_pred ccc----cccCCCCCEEEEcCCCCCcchhh-cCcchhhc---------------CCHHHHH----HHHHHHHHHHHHHHH
Confidence 333 336778999983 3333332 22432111 1122222 233455678999999
Q ss_pred hcccCceEEEEecCcC
Q 017439 217 ELVPGGLLLLLTPTIR 232 (371)
Q Consensus 217 EL~pGG~lvl~~~gr~ 232 (371)
-|+|||+|+..++...
T Consensus 366 ~lkpgG~lvystcs~~ 381 (445)
T PRK14904 366 LLKPGGVLVYATCSIE 381 (445)
T ss_pred hcCCCcEEEEEeCCCC
Confidence 9999999999987664
No 113
>PRK14968 putative methyltransferase; Provisional
Probab=95.99 E-value=0.055 Score=48.02 Aligned_cols=24 Identities=42% Similarity=0.697 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhcccCceEEEEec
Q 017439 206 DIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
....|++.-.+-|+|||.+++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356788888999999999988763
No 114
>PLN03075 nicotianamine synthase; Provisional
Probab=95.89 E-value=0.032 Score=54.65 Aligned_cols=104 Identities=21% Similarity=0.239 Sum_probs=59.2
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC----C--CCccee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV----P--LSKKYF 136 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l----~--~~~~~f 136 (371)
.+-+|||+|||.|+.|..++.. . . .| .-++.--|.-..- +.+-+.+ + ..+-.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa------~--~---------~p---~~~~~giD~d~~a-i~~Ar~~~~~~~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK------H--H---------LP---TTSFHNFDIDPSA-NDVARRLVSSDPDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH------h--c---------CC---CCEEEEEeCCHHH-HHHHHHHhhhccCccCCcEE
Confidence 5789999999999988776621 1 1 11 2234444443311 1111121 1 112345
Q ss_pred eeccCCCcccccCC-CCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 137 ATGVPGSFHGRLFP-ESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 137 ~~gvpgSFy~rLfP-~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
..+.-.. +.+ .+.+|++|+. ++|-.++.++ ...|+.-+
T Consensus 182 ~~~Da~~----~~~~l~~FDlVF~~-ALi~~dk~~k------------------------------------~~vL~~l~ 220 (296)
T PLN03075 182 HTADVMD----VTESLKEYDVVFLA-ALVGMDKEEK------------------------------------VKVIEHLG 220 (296)
T ss_pred EECchhh----cccccCCcCEEEEe-cccccccccH------------------------------------HHHHHHHH
Confidence 5554322 232 3679999999 6654433221 12466777
Q ss_pred hhcccCceEEEEe
Q 017439 216 QELVPGGLLLLLT 228 (371)
Q Consensus 216 ~EL~pGG~lvl~~ 228 (371)
+-|+|||.+++-+
T Consensus 221 ~~LkPGG~Lvlr~ 233 (296)
T PLN03075 221 KHMAPGALLMLRS 233 (296)
T ss_pred HhcCCCcEEEEec
Confidence 8999999999887
No 115
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.84 E-value=0.059 Score=55.44 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=74.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC---Ccceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL---SKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~---~~~~f~~gv 140 (371)
.-+|+|+|||+|.-|+.+. . ... + .-+|+..|+-.+--..+=+.+.. ..-.+..+.
T Consensus 238 g~~VLD~cagpGgkt~~la--------~-~~~---------~---~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~D 296 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------E-LMK---------D---QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIAD 296 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------H-HcC---------C---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc
Confidence 3589999999999998877 2 111 1 22577777755443333222211 111233333
Q ss_pred CCCcccccCCCCceeEEEe---cCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 141 PGSFHGRLFPESSLHVAHT---SNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~S---s~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
...+- . ++++++|.|++ ++.+..+.+.|+.... .+++.. .+..++-...|..=++-
T Consensus 297 a~~l~-~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 297 AERLT-E-YVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKEDF----KKLSEIQLRIVSQAWKL 355 (431)
T ss_pred hhhhh-h-hhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHHHH----HHHHHHHHHHHHHHHHh
Confidence 22211 1 23567899986 3556666666653221 112222 23345556789888999
Q ss_pred cccCceEEEEecCcC
Q 017439 218 LVPGGLLLLLTPTIR 232 (371)
Q Consensus 218 L~pGG~lvl~~~gr~ 232 (371)
|+|||+|+..++...
T Consensus 356 LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 356 LEKGGILLYSTCTVT 370 (431)
T ss_pred cCCCCEEEEEECCCC
Confidence 999999999998754
No 116
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.75 E-value=0.098 Score=53.89 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=65.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcC---CCCcceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSV---PLSKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l---~~~~~~f~~gv 140 (371)
.-+|+|+|||+|.-|+.+.+. .. | .-+|+..|+-.+--..+=+.+ .-..-.+..+.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~---------~~---------~---~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D 309 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAEL---------LK---------N---TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALD 309 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHH---------hC---------C---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 368999999999999987732 11 1 124666666544322222221 11111233333
Q ss_pred CCCcccccCCCCceeEEEecC---CccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 141 PGSFHGRLFPESSLHVAHTSN---ALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~---alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
...+- .-++ +++|++++.. ....+++.|+... .+ .++..+ ...+--..+|+.=.+-
T Consensus 310 ~~~~~-~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~-------~~--------~~~~~~----~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 310 ARKVH-EKFA-EKFDKILVDAPCSGLGVIRRKPDIKY-------NK--------TKEDIE----SLQEIQLEILESVAQY 368 (444)
T ss_pred ccccc-chhc-ccCCEEEEcCCCCCCeeeccCcchhh-------cC--------CHHHHH----HHHHHHHHHHHHHHHH
Confidence 22211 1123 6789998742 3344444443211 11 112111 1223334578888889
Q ss_pred cccCceEEEEecCc
Q 017439 218 LVPGGLLLLLTPTI 231 (371)
Q Consensus 218 L~pGG~lvl~~~gr 231 (371)
|+|||+||..++..
T Consensus 369 LkpGG~lvystcs~ 382 (444)
T PRK14902 369 LKKGGILVYSTCTI 382 (444)
T ss_pred cCCCCEEEEEcCCC
Confidence 99999999776543
No 117
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.73 E-value=0.015 Score=53.43 Aligned_cols=111 Identities=24% Similarity=0.417 Sum_probs=69.4
Q ss_pred EEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC---CCcceeeeccCC
Q 017439 66 KIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP---LSKKYFATGVPG 142 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gvpg 142 (371)
.++|+|||.|...+... . + .| +..++--|.-.+-....-+.+. ..+-.++.+...
T Consensus 20 l~lEIG~G~G~~l~~~A--------~-~----------~P---d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~ 77 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------K-R----------NP---DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR 77 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------H-H----------ST---TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT
T ss_pred eEEEecCCCCHHHHHHH--------H-H----------CC---CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH
Confidence 89999999998877666 2 1 34 5567777776655544444432 223356667777
Q ss_pred CcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 143 SFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 143 SFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
.+...++|++|++-++-++.=-| |+..-- |.++ ..+ .||..-++-|+|||
T Consensus 78 ~~l~~~~~~~~v~~i~i~FPDPW----pK~rH~-------krRl----~~~---------------~fl~~~~~~L~~gG 127 (195)
T PF02390_consen 78 ELLRRLFPPGSVDRIYINFPDPW----PKKRHH-------KRRL----VNP---------------EFLELLARVLKPGG 127 (195)
T ss_dssp THHHHHSTTTSEEEEEEES---------SGGGG-------GGST----TSH---------------HHHHHHHHHEEEEE
T ss_pred HHHhhcccCCchheEEEeCCCCC----cccchh-------hhhc----CCc---------------hHHHHHHHHcCCCC
Confidence 88899999999999999988777 432110 1111 122 27888889999999
Q ss_pred eEEEEe
Q 017439 223 LLLLLT 228 (371)
Q Consensus 223 ~lvl~~ 228 (371)
.+.+.+
T Consensus 128 ~l~~~T 133 (195)
T PF02390_consen 128 ELYFAT 133 (195)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 997766
No 118
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.60 E-value=0.024 Score=53.84 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.1
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
.-+|+|+|||+|..++.+.
T Consensus 120 ~~~VLDiGcGsG~l~i~~~ 138 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAA 138 (250)
T ss_pred CCEEEEeCCcHHHHHHHHH
Confidence 4689999999998766443
No 119
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.59 E-value=0.035 Score=51.64 Aligned_cols=19 Identities=11% Similarity=0.280 Sum_probs=15.3
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
-.+|+|+|||+|.+|..+.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4799999999999998776
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.50 E-value=0.1 Score=53.42 Aligned_cols=128 Identities=15% Similarity=0.071 Sum_probs=71.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCc-ceeeeccCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSK-KYFATGVPG 142 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~-~~f~~gvpg 142 (371)
.-+|+|+|||+|.-|+.+. + ... .-.++..|.-.+--..+-+.+.... .+-+..+.+
T Consensus 239 g~~VLDlcag~G~kt~~la--------~-~~~-------------~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~ 296 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL--------E-LAP-------------QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG 296 (426)
T ss_pred CCeEEEeCCCccHHHHHHH--------H-HcC-------------CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4699999999999999877 2 111 1146666665554444433332110 111111111
Q ss_pred Cccc--ccCCCCceeEEEe---cCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 143 SFHG--RLFPESSLHVAHT---SNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 143 SFy~--rLfP~~Svd~~~S---s~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
.-.+ ...+.+++|.+++ ++++.-+.+.|+.... . +++..+ +..+.-..+|+.=++-
T Consensus 297 d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~--------------~-~~~~~~----~l~~lQ~~lL~~a~~~ 357 (426)
T TIGR00563 297 DGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL--------------R-KPRDIA----ELAELQSEILDAIWPL 357 (426)
T ss_pred ccccccccccccccCEEEEcCCCCCCcccccCcchhhc--------------C-CHHHHH----HHHHHHHHHHHHHHHh
Confidence 1111 1225678999986 3455555566653211 1 122222 2223445678888889
Q ss_pred cccCceEEEEecCcC
Q 017439 218 LVPGGLLLLLTPTIR 232 (371)
Q Consensus 218 L~pGG~lvl~~~gr~ 232 (371)
|+|||+||..++.-.
T Consensus 358 LkpgG~lvystcs~~ 372 (426)
T TIGR00563 358 LKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCcEEEEEeCCCC
Confidence 999999999987653
No 121
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.47 E-value=0.16 Score=52.17 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCc
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
+.-..+|..=++-|+|||+||..++..
T Consensus 361 ~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 361 PLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 444678999899999999999887554
No 122
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.30 E-value=0.035 Score=58.31 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=63.2
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC---CCcceeeecc
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP---LSKKYFATGV 140 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~---~~~~~f~~gv 140 (371)
..+|+|+|||+|..++.+.. + .| ..+++..|.-..--...=+.+. -..++ .-+
T Consensus 139 ~~~VLDlG~GsG~iai~la~---------~----------~p---~~~v~avDis~~al~~A~~N~~~~~l~~~v--~~~ 194 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC---------E----------LP---NANVIATDISLDAIEVAKSNAIKYEVTDRI--QII 194 (506)
T ss_pred CCEEEEccCchhHHHHHHHH---------H----------CC---CCeEEEEECCHHHHHHHHHHHHHcCCccce--eee
Confidence 46899999999999987762 1 12 3356777774322111111110 00111 112
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHH-HHHHhhHHHHHHHHHhhcc
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYS-AQFKNDIESFLNARAQELV 219 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~-~Q~~~D~~~FL~~Ra~EL~ 219 (371)
-+++++. +|++++|+++|+--....+..+....+.. + | .|. .+-+. ...-+.+..+++.-.+-|+
T Consensus 195 ~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~----~----~----EP~-~AL~gg~dGl~~~~~il~~a~~~L~ 260 (506)
T PRK01544 195 HSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETI----N----Y----EPS-IALFAEEDGLQAYFIIAENAKQFLK 260 (506)
T ss_pred ecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhh----c----c----CcH-HHhcCCccHHHHHHHHHHHHHHhcc
Confidence 2344443 35678999999854444333221100000 0 0 000 00000 0011234557777788999
Q ss_pred cCceEEEEe
Q 017439 220 PGGLLLLLT 228 (371)
Q Consensus 220 pGG~lvl~~ 228 (371)
|||.+++..
T Consensus 261 ~gG~l~lEi 269 (506)
T PRK01544 261 PNGKIILEI 269 (506)
T ss_pred CCCEEEEEE
Confidence 999999865
No 123
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.23 E-value=0.13 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcccCceEEEEec
Q 017439 207 IESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
+..+++.=.+-|+|||++++...
T Consensus 195 ~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 195 LRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEC
Confidence 45677777788999999998863
No 124
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=95.22 E-value=0.066 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhcccCceEEEEe
Q 017439 207 IESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
+..+++.-.+-|+|||.+++..
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE
Confidence 4567777778899999988766
No 125
>PRK03612 spermidine synthase; Provisional
Probab=95.21 E-value=0.074 Score=56.04 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=31.1
Q ss_pred HHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccc
Q 017439 210 FLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMY 275 (371)
Q Consensus 210 FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y 275 (371)
|++.-.+-|+|||+++++... +.. .-+.+.++.+.|.+.|. .-+.-..++|.|
T Consensus 397 f~~~~~~~L~pgG~lv~~~~~-~~~----------~~~~~~~i~~~l~~~gf--~v~~~~~~vps~ 449 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQSTS-PYF----------APKAFWSIEATLEAAGL--ATTPYHVNVPSF 449 (521)
T ss_pred HHHHHHHhcCCCeEEEEecCC-ccc----------chHHHHHHHHHHHHcCC--EEEEEEeCCCCc
Confidence 566666789999999887522 111 11445566666666676 222233455776
No 126
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.20 E-value=0.13 Score=46.80 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..-+|+|+|||+|..++.+.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH
Confidence 34699999999999888765
No 127
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=94.92 E-value=0.097 Score=48.80 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=85.4
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhh-hhcC----CCCcceee
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTL-FKSV----PLSKKYFA 137 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~l-F~~l----~~~~~~f~ 137 (371)
.-.-++++|||+|+|= +|-+. .| --.|.+-|=-.|- -.. -++. |..-.+|+
T Consensus 76 ~K~~vLEvgcGtG~Nf--------------kfy~~------~p---~~svt~lDpn~~m-ee~~~ks~~E~k~~~~~~fv 131 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANF--------------KFYPW------KP---INSVTCLDPNEKM-EEIADKSAAEKKPLQVERFV 131 (252)
T ss_pred CccceEEecccCCCCc--------------ccccC------CC---CceEEEeCCcHHH-HHHHHHHHhhccCcceEEEE
Confidence 3466899999999994 22210 23 2345555533332 222 1111 11224588
Q ss_pred eccCCCcccccC--CCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 138 TGVPGSFHGRLF--PESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 138 ~gvpgSFy~rLf--P~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
.|.+. +|. |+.|+|.+++..+|.= . +|-..-|+.-.
T Consensus 132 va~ge----~l~~l~d~s~DtVV~TlvLCS--v------------------------------------e~~~k~L~e~~ 169 (252)
T KOG4300|consen 132 VADGE----NLPQLADGSYDTVVCTLVLCS--V------------------------------------EDPVKQLNEVR 169 (252)
T ss_pred eechh----cCcccccCCeeeEEEEEEEec--c------------------------------------CCHHHHHHHHH
Confidence 88743 444 9999999998776632 1 12222466667
Q ss_pred hhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEE
Q 017439 216 QELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIE 295 (371)
Q Consensus 216 ~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~ 295 (371)
+-|+|||++++.=-|+..-.. ...+|+...+-+-.+...|= .=--|.-+.+++. .|++.
T Consensus 170 rlLRpgG~iifiEHva~~y~~-----~n~i~q~v~ep~~~~~~dGC---------------~ltrd~~e~Leda-~f~~~ 228 (252)
T KOG4300|consen 170 RLLRPGGRIIFIEHVAGEYGF-----WNRILQQVAEPLWHLESDGC---------------VLTRDTGELLEDA-EFSID 228 (252)
T ss_pred HhcCCCcEEEEEecccccchH-----HHHHHHHHhchhhheeccce---------------EEehhHHHHhhhc-ccccc
Confidence 899999999998877754211 11133333333333444442 2233455566664 48888
Q ss_pred EEEEeec
Q 017439 296 IMNTFTH 302 (371)
Q Consensus 296 ~~e~~~~ 302 (371)
..+.++.
T Consensus 229 ~~kr~~~ 235 (252)
T KOG4300|consen 229 SCKRFNF 235 (252)
T ss_pred hhhcccC
Confidence 8777643
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=94.55 E-value=0.37 Score=46.13 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHhhcccCceEEEEecCcC
Q 017439 204 KNDIESFLNARAQELVPGGLLLLLTPTIR 232 (371)
Q Consensus 204 ~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~ 232 (371)
.+.-..+|+.=++-|+|||+||..++...
T Consensus 175 ~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 175 SALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 34445688888999999999998876543
No 129
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=94.51 E-value=0.13 Score=50.33 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=60.8
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc---C--CCCc--ceee
Q 017439 65 FKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS---V--PLSK--KYFA 137 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~---l--~~~~--~~f~ 137 (371)
.+|+|+|||-|...+.+. + + .| ..++.+.|. |+..+=.. + .... -+|.
T Consensus 160 ~~vlDlGCG~Gvlg~~la--------~-~----------~p---~~~vtmvDv---n~~Av~~ar~Nl~~N~~~~~~v~~ 214 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLA--------K-K----------SP---QAKLTLVDV---NARAVESARKNLAANGVENTEVWA 214 (300)
T ss_pred CcEEEeCCCccHHHHHHH--------H-h----------CC---CCeEEEEec---CHHHHHHHHHhHHHcCCCccEEEE
Confidence 399999999999999877 2 1 33 456666664 32222111 0 1111 2455
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
+-+ |+.+.. ++|+|+|+=-+|==.++ ...+ + ..+++.=++-
T Consensus 215 s~~----~~~v~~--kfd~IisNPPfh~G~~v----------------------~~~~--~---------~~~i~~A~~~ 255 (300)
T COG2813 215 SNL----YEPVEG--KFDLIISNPPFHAGKAV----------------------VHSL--A---------QEIIAAAARH 255 (300)
T ss_pred ecc----cccccc--cccEEEeCCCccCCcch----------------------hHHH--H---------HHHHHHHHHh
Confidence 555 666666 89999997444410000 0101 1 1266777789
Q ss_pred cccCceEEEEecC
Q 017439 218 LVPGGLLLLLTPT 230 (371)
Q Consensus 218 L~pGG~lvl~~~g 230 (371)
|++||.|.++.-|
T Consensus 256 L~~gGeL~iVan~ 268 (300)
T COG2813 256 LKPGGELWIVANR 268 (300)
T ss_pred hccCCEEEEEEcC
Confidence 9999999998863
No 130
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.42 E-value=0.075 Score=52.68 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=17.0
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
.-+|+|+|||+|.+|+.+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCEEEEEeCCccHHHHHHH
Confidence 4689999999999998876
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.28 E-value=0.085 Score=50.70 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=16.1
Q ss_pred HHHHHHHhhcccCceEEEE
Q 017439 209 SFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~ 227 (371)
.|++.-++-|+|||.+++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 3677777899999999987
No 132
>PRK04457 spermidine synthase; Provisional
Probab=94.18 E-value=0.12 Score=49.51 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHhhcccCceEEEEecCcC
Q 017439 209 SFLNARAQELVPGGLLLLLTPTIR 232 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~~~gr~ 232 (371)
.|++.-.+-|+|||+++++..+++
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 377777788999999999877653
No 133
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=94.17 E-value=0.87 Score=44.26 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=68.7
Q ss_pred eEEeeecCCCCcccHHHHHH--------------HHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC
Q 017439 65 FKIADLGCSTGPNTFIAMQN--------------IIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP 130 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~--------------ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~ 130 (371)
-.|+|+|||+|.-|+.++.. .|.-..+ .++... . .. -|.|.++|+.+--|+..=
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~e-N~qr~~-l---~g---~i~v~~~~me~d~~~~~~---- 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKE-NAQRLK-L---SG---RIEVIHNIMESDASDEHP---- 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHH-HHHHHh-h---cC---ceEEEecccccccccccc----
Confidence 37999999999999998862 2222222 222211 0 12 578999998877644431
Q ss_pred CCcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHH-------
Q 017439 131 LSKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQF------- 203 (371)
Q Consensus 131 ~~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~------- 203 (371)
.+.+.+|++.|+ |+-+.+..- .+ ..|+|. .|..-.
T Consensus 218 ------------------l~~~~~dllvsN---------PPYI~~dD~----~~------l~~eV~-~yEp~lALdGg~e 259 (328)
T KOG2904|consen 218 ------------------LLEGKIDLLVSN---------PPYIRKDDN----RQ------LKPEVR-LYEPKLALDGGLE 259 (328)
T ss_pred ------------------cccCceeEEecC---------CCcccccch----hh------cCchhe-ecCchhhhccccc
Confidence 566778888876 333321110 00 001110 010000
Q ss_pred -HhhHHHHHHHHHhhcccCceEEEEecCcCCC
Q 017439 204 -KNDIESFLNARAQELVPGGLLLLLTPTIRDG 234 (371)
Q Consensus 204 -~~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~ 234 (371)
-.-+..|+..-.+-|+|||.+++.+.+++..
T Consensus 260 G~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 260 GYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred hhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 1123346677778999999999999998643
No 134
>PLN02366 spermidine synthase
Probab=94.16 E-value=0.14 Score=50.54 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcC--chhhh-hhc----CCCCcc
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNN--DFNTL-FKS----VPLSKK 134 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~N--DFn~l-F~~----l~~~~~ 134 (371)
+++-+|+++|||.|.....++ + +. + .-+|...|+... ++..- |.. +...+-
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k--~~---------~---v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv 147 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------R--HS---------S---VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV 147 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------h--CC---------C---CCeEEEEECCHHHHHHHHHhhhhhccccCCCce
Confidence 456799999999999665554 2 11 1 114444454432 21111 111 122344
Q ss_pred eeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 017439 135 YFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNAR 214 (371)
Q Consensus 135 ~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~R 214 (371)
-++.+.+..|..+. |++++|+|++-.+-+|- |. ...|. ..|++.-
T Consensus 148 ~vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~---~~------------------------~~L~t-------~ef~~~~ 192 (308)
T PLN02366 148 NLHIGDGVEFLKNA-PEGTYDAIIVDSSDPVG---PA------------------------QELFE-------KPFFESV 192 (308)
T ss_pred EEEEChHHHHHhhc-cCCCCCEEEEcCCCCCC---ch------------------------hhhhH-------HHHHHHH
Confidence 56777777776654 56789999986554441 11 00111 2367777
Q ss_pred HhhcccCceEEEEe
Q 017439 215 AQELVPGGLLLLLT 228 (371)
Q Consensus 215 a~EL~pGG~lvl~~ 228 (371)
.+-|+|||.|+...
T Consensus 193 ~~~L~pgGvlv~q~ 206 (308)
T PLN02366 193 ARALRPGGVVCTQA 206 (308)
T ss_pred HHhcCCCcEEEECc
Confidence 78899999997653
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.80 E-value=0.19 Score=52.88 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcce
Q 017439 30 SIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLE 109 (371)
Q Consensus 30 S~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~e 109 (371)
+..|++.++...|.+.=..+. .. ..+.-.++|+|||.|..++.... + .| +
T Consensus 322 ~~~q~~~~e~~~p~~~i~~ek------lf--~~~~p~~lEIG~G~G~~~~~~A~---------~----------~p---~ 371 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEK------LV--NEKRKVFLEIGFGMGEHFINQAK---------M----------NP---D 371 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHH------hC--CCCCceEEEECCCchHHHHHHHH---------h----------CC---C
Confidence 447888888888876522211 11 34567899999999998887662 1 23 3
Q ss_pred eEEEecCCCcCchhhhhhcCCC--CcceeeeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCcee
Q 017439 110 FQVFFNDHSNNDFNTLFKSVPL--SKKYFATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHIL 187 (371)
Q Consensus 110 i~v~~nDlp~NDFn~lF~~l~~--~~~~f~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~ 187 (371)
.-++--|.-.+-...+.+.... -.++.+...-..+....||++|+|-+|-++.=-| |+.-- .|.++.
T Consensus 372 ~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkrh-------~krRl~ 440 (506)
T PRK01544 372 ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNKQ-------KKKRIF 440 (506)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCCC-------cccccc
Confidence 3444444444333333333211 1233222212334567789999999999999888 54211 111111
Q ss_pred ecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEe
Q 017439 188 CSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 188 ~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
.++ ||+.-+.-|+|||.+.+.+
T Consensus 441 ----~~~---------------fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 441 ----NKE---------------RLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ----CHH---------------HHHHHHHhcCCCCEEEEEc
Confidence 222 7777789999999998765
No 136
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=93.74 E-value=0.071 Score=51.68 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=41.5
Q ss_pred cccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEE
Q 017439 146 GRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLL 225 (371)
Q Consensus 146 ~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lv 225 (371)
.-.+++.|+|.+.|.+.+||||.--.- .+-|+.-.+.|+|||.+.
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR-----------------------------------~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERR-----------------------------------ERALEELLRVLRPGGNAL 140 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHH-----------------------------------HHHHHHHHHHhcCCCceE
Confidence 445789999999999999998863210 113556668999999999
Q ss_pred EEecCcCCCC
Q 017439 226 LLTPTIRDGI 235 (371)
Q Consensus 226 l~~~gr~~~~ 235 (371)
+...+..-..
T Consensus 141 vyvwa~~q~~ 150 (293)
T KOG1331|consen 141 VYVWALEQHQ 150 (293)
T ss_pred EEEehhhccC
Confidence 9998876443
No 137
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=93.62 E-value=0.076 Score=52.45 Aligned_cols=64 Identities=19% Similarity=0.296 Sum_probs=46.0
Q ss_pred CcceeeeccCCCcccccC-----CCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhh
Q 017439 132 SKKYFATGVPGSFHGRLF-----PESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKND 206 (371)
Q Consensus 132 ~~~~f~~gvpgSFy~rLf-----P~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D 206 (371)
+...|++|. +|+++|. ++-++|++=|=+|+|+-=. - ++-
T Consensus 172 f~a~f~~~D--c~~~~l~d~~e~~dp~fDivScQF~~HYaFe-t---------------------------------ee~ 215 (389)
T KOG1975|consen 172 FTAVFIAAD--CFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-T---------------------------------EES 215 (389)
T ss_pred ceeEEEEec--cchhHHHHhccCCCCCcceeeeeeeEeeeec-c---------------------------------HHH
Confidence 345677776 7887653 4445999999999998111 0 112
Q ss_pred HHHHHHHHHhhcccCceEEEEecCc
Q 017439 207 IESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
...+|+.-++-|+|||.|+-+++-.
T Consensus 216 ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 216 ARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCcH
Confidence 2347999999999999999999754
No 138
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.23 E-value=0.33 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHhhcccCceEEEE
Q 017439 205 NDIESFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~ 227 (371)
+-+.+||+.-+.-|.|||+||+.
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEc
Confidence 56778999999999999999985
No 139
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.17 E-value=0.32 Score=47.48 Aligned_cols=44 Identities=14% Similarity=0.327 Sum_probs=26.8
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNN 120 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~N 120 (371)
+++||-.-|||+|-=.-.+.--+.+.... . .- .++|+..|+-.+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~-~----------~~---~~~I~atDIs~~ 158 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGT-A----------PG---RWKVFASDIDTE 158 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcc-c----------CC---CcEEEEEECCHH
Confidence 46999999999996444333223332211 0 11 578888888664
No 140
>PHA03412 putative methyltransferase; Provisional
Probab=92.64 E-value=0.5 Score=44.96 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=41.1
Q ss_pred ceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccCCC
Q 017439 64 TFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVPGS 143 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvpgS 143 (371)
..+|+|+|||+|..++.+. + ++.. .+ ..+|+.-|+-.+-....=+.++. .-+.. +.
T Consensus 50 ~grVLDlG~GSG~Lalala--------~-~~~~-------~~---~~~V~aVEID~~Al~~Ar~n~~~--~~~~~---~D 105 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV--------H-MMMY-------AK---PREIVCVELNHTYYKLGKRIVPE--ATWIN---AD 105 (241)
T ss_pred CCEEEEccChHHHHHHHHH--------H-hccc-------CC---CcEEEEEECCHHHHHHHHhhccC--CEEEE---cc
Confidence 4699999999999888766 2 2211 11 23566666665544433333321 12222 22
Q ss_pred cccccCCCCceeEEEecC
Q 017439 144 FHGRLFPESSLHVAHTSN 161 (371)
Q Consensus 144 Fy~rLfP~~Svd~~~Ss~ 161 (371)
|.... +++++|+|+|+=
T Consensus 106 ~~~~~-~~~~FDlIIsNP 122 (241)
T PHA03412 106 ALTTE-FDTLFDMAISNP 122 (241)
T ss_pred hhccc-ccCCccEEEECC
Confidence 33222 356899999973
No 141
>PRK01581 speE spermidine synthase; Validated
Probab=92.56 E-value=0.2 Score=50.57 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.8
Q ss_pred HHHHHHHhhcccCceEEEE
Q 017439 209 SFLNARAQELVPGGLLLLL 227 (371)
Q Consensus 209 ~FL~~Ra~EL~pGG~lvl~ 227 (371)
.|++.-.+-|+|||.|++.
T Consensus 249 EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 249 ELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 3677777889999999887
No 142
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=92.14 E-value=0.37 Score=42.70 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.7
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|..+++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred cCEEEEECCCccHHHHHHHh
Confidence 35899999999999998885
No 143
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=91.65 E-value=0.3 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhhcccCceEEEEe
Q 017439 206 DIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
...+|+..=..-|+|||.+++..
T Consensus 216 ~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 216 VYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred HHHHHHHhhHHHcCCCcEEEEEE
Confidence 45568888888899999998877
No 144
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=91.34 E-value=5.8 Score=37.05 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=18.6
Q ss_pred ccccCCHHHHHHHhhcCCceEEEEEEEe
Q 017439 273 PMYYPFLGELMGHIKRNKNFSIEIMNTF 300 (371)
Q Consensus 273 P~Y~ps~eE~~~~i~~~g~F~I~~~e~~ 300 (371)
|=|.-+.+|+++++.. .|+|+.++..
T Consensus 166 PPf~v~~~ev~~l~~~--~f~i~~l~~~ 191 (218)
T PF05724_consen 166 PPFSVTEEEVRELFGP--GFEIEELEEE 191 (218)
T ss_dssp SS----HHHHHHHHTT--TEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhcC--CcEEEEEecc
Confidence 4455678999999994 6999999975
No 145
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=91.29 E-value=8.3 Score=37.92 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=38.8
Q ss_pred HHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccc--cCCHHHHHHHhh
Q 017439 210 FLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMY--YPFLGELMGHIK 287 (371)
Q Consensus 210 FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y--~ps~eE~~~~i~ 287 (371)
=|+--+.-|.|||.|+.+.---- | -.+.|..+|...- +| -||- .||..|+.++++
T Consensus 231 sl~gl~~al~pgG~lIyTgQPwH---P--------Qle~IAr~LtsHr-~g-----------~~WvMRrRsq~EmD~Lv~ 287 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTGQPWH---P--------QLEMIARVLTSHR-DG-----------KAWVMRRRSQAEMDQLVE 287 (311)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCC---c--------chHHHHHHHhccc-CC-----------CceEEEecCHHHHHHHHH
Confidence 36666788999999987752110 1 1255666665321 11 1444 479999999999
Q ss_pred cCCceE
Q 017439 288 RNKNFS 293 (371)
Q Consensus 288 ~~g~F~ 293 (371)
..| |+
T Consensus 288 ~aG-F~ 292 (311)
T PF12147_consen 288 AAG-FE 292 (311)
T ss_pred HcC-Cc
Confidence 987 65
No 146
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=91.02 E-value=0.34 Score=46.53 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=56.1
Q ss_pred CceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCc
Q 017439 152 SSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 152 ~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
...|.+.|+.||-=.++-++ . +.+=|++-+.-|||||.|++...-.
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~--------------------------~--------y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLD--------------------------E--------YRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHH--------------------------H--------HHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchhhhhhhHHHHHHcCCHH--------------------------H--------HHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 36999999999987665442 2 2334778889999999999988644
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCCceEEEEEEE
Q 017439 232 RDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
..... + | .-.+|...-+.+.++++|++.| |+|+..+.
T Consensus 203 ~t~Y~--------------------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~~ 239 (256)
T PF01234_consen 203 STYYM--------------------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLEK 239 (256)
T ss_dssp -SEEE--------------------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEEG
T ss_pred ceeEE--------------------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEeccc
Confidence 32210 0 1 1136777889999999999987 99998883
No 147
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.95 E-value=1.2 Score=40.93 Aligned_cols=118 Identities=20% Similarity=0.369 Sum_probs=57.7
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhh---------hhhcCCCC
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNT---------LFKSVPLS 132 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~---------lF~~l~~~ 132 (371)
.+++||-..|||+|-=.-.+.--+-+.... . .+ ..++++.+|+-..--.. -++.+|+.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~-~----------~~--~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~ 96 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPG-A----------LG--WDFRILATDISPSALEKARAGIYPERSLRGLPPA 96 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S------------TT---SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HH
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcc-c----------CC--CceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHH
Confidence 478999999999996544443333332222 0 11 15889999986532111 11223321
Q ss_pred --cceeeeccCCCcc-----------------cccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCH
Q 017439 133 --KKYFATGVPGSFH-----------------GRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEK 193 (371)
Q Consensus 133 --~~~f~~gvpgSFy-----------------~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~ 193 (371)
..||....++.|- +.-.|.+.+|+|+|-+.|-.++..-
T Consensus 97 ~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~----------------------- 153 (196)
T PF01739_consen 97 YLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET----------------------- 153 (196)
T ss_dssp HHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----------------------
T ss_pred HHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----------------------
Confidence 2455433332221 1234667788888888777754311
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEe
Q 017439 194 EVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 194 ~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
=...++.-++-|+|||.|++--
T Consensus 154 -------------~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 154 -------------QQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -------------HHHHHHHHGGGEEEEEEEEE-T
T ss_pred -------------HHHHHHHHHHHcCCCCEEEEec
Confidence 1235677789999999997743
No 148
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.98 E-value=1.2 Score=42.07 Aligned_cols=112 Identities=22% Similarity=0.313 Sum_probs=65.4
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC-Cc-ce-eeeccC
Q 017439 65 FKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL-SK-KY-FATGVP 141 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~-~~-~~-f~~gvp 141 (371)
-.++|+|||.|.-.+.... + .| ++-++--+.-.+--..+-+.+.. .- ++ .+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~-------~------------nP---~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAK-------K------------NP---EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA 107 (227)
T ss_pred cEEEEECCCCCHHHHHHHH-------H------------CC---CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 5899999999987776552 1 22 32333333322222222222210 11 22 333444
Q ss_pred CCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccC
Q 017439 142 GSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPG 221 (371)
Q Consensus 142 gSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pG 221 (371)
--+...++|++|+|=++-++.=-| |+.-- +|.++. .++ ||+.=++-|+||
T Consensus 108 ~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH-------~KRRl~----~~~---------------fl~~~a~~Lk~g 157 (227)
T COG0220 108 VEVLDYLIPDGSLDKIYINFPDPW----PKKRH-------HKRRLT----QPE---------------FLKLYARKLKPG 157 (227)
T ss_pred HHHHHhcCCCCCeeEEEEECCCCC----CCccc-------cccccC----CHH---------------HHHHHHHHccCC
Confidence 445677788889999999998888 54321 122221 222 777778999999
Q ss_pred ceEEEEe
Q 017439 222 GLLLLLT 228 (371)
Q Consensus 222 G~lvl~~ 228 (371)
|.+.+.+
T Consensus 158 G~l~~aT 164 (227)
T COG0220 158 GVLHFAT 164 (227)
T ss_pred CEEEEEe
Confidence 9998876
No 149
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=89.59 E-value=8.4 Score=36.34 Aligned_cols=21 Identities=5% Similarity=0.004 Sum_probs=18.1
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
..-||++-|||.|.+..-+.+
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~ 63 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS 63 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh
Confidence 346999999999999998873
No 150
>PLN02672 methionine S-methyltransferase
Probab=89.19 E-value=0.9 Score=51.88 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=19.4
Q ss_pred HHHHHHHHhhcccCceEEEEecCc
Q 017439 208 ESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 208 ~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
.+++..-.+-|+|||.|++.+.++
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECcc
Confidence 456777778999999999999754
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=88.76 E-value=0.61 Score=41.80 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=53.5
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC-----ccee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS-----KKYF 136 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~-----~~~f 136 (371)
.+..+|++||||+|--++.+. +.. . .-.|+++|++. =-..+=..+... .++-
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a----------~~~--------~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAA----------KLF--------G----AARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHH----------HT---------T-----SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred cCCceEEEECCccchhHHHHH----------hcc--------C----CceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 356799999999998888777 221 0 12688999876 222222222111 1111
Q ss_pred --eeccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 017439 137 --ATGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNAR 214 (371)
Q Consensus 137 --~~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~R 214 (371)
..-.+.......+.++++|+++.+=++.+ + +.+..+++.-
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~----~----------------------------------~~~~~L~~tl 142 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILASDVLYD----E----------------------------------ELFEPLVRTL 142 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEEES--S-----G----------------------------------GGHHHHHHHH
T ss_pred CcEEEecCcccccccccccCCEEEEecccch----H----------------------------------HHHHHHHHHH
Confidence 11111112223334455666665555554 1 3334467777
Q ss_pred HhhcccCceEEEEecCcC
Q 017439 215 AQELVPGGLLLLLTPTIR 232 (371)
Q Consensus 215 a~EL~pGG~lvl~~~gr~ 232 (371)
..-|+++|.+++...-|.
T Consensus 143 ~~ll~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 143 KRLLKPNGKVLLAYKRRR 160 (173)
T ss_dssp HHHBTT-TTEEEEEE-S-
T ss_pred HHHhCCCCEEEEEeCEec
Confidence 788999999777766664
No 152
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.36 E-value=2.7 Score=41.67 Aligned_cols=119 Identities=19% Similarity=0.329 Sum_probs=66.3
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCC-C-Ccceeeecc
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVP-L-SKKYFATGV 140 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~-~-~~~~f~~gv 140 (371)
...+|+|||||+|.=|..+++.+. . +- . .+..+--|+-..--....+.|. . .+.+=+.|+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~----~-~~---------~----~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l 137 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALE----R-QK---------K----SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGL 137 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHH----h-cC---------C----CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEE
Confidence 345899999999999988885543 2 10 1 3467777777655555555555 2 233445555
Q ss_pred CCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceee-----cCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 141 PGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILC-----SGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 141 pgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~-----~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
-|.|.. .++||.+ |.. .. ++..++. .+-+|+.. ..||+.-+
T Consensus 138 ~gdy~~---------------~l~~l~~-~~~-~~------~~r~~~flGSsiGNf~~~ea-----------~~fL~~~~ 183 (319)
T TIGR03439 138 LGTYDD---------------GLAWLKR-PEN-RS------RPTTILWLGSSIGNFSRPEA-----------AAFLAGFL 183 (319)
T ss_pred EecHHH---------------HHhhccc-ccc-cC------CccEEEEeCccccCCCHHHH-----------HHHHHHHH
Confidence 555533 4556533 100 00 0111221 12233322 23666666
Q ss_pred h-hcccCceEEEEecCcCC
Q 017439 216 Q-ELVPGGLLLLLTPTIRD 233 (371)
Q Consensus 216 ~-EL~pGG~lvl~~~gr~~ 233 (371)
+ -|.|||.|++-+=+.++
T Consensus 184 ~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 184 ATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred HhhCCCCCEEEEecCCCCC
Confidence 6 89999999998854443
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=88.30 E-value=1.1 Score=44.66 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=33.7
Q ss_pred ccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceE
Q 017439 145 HGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLL 224 (371)
Q Consensus 145 y~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~l 224 (371)
-+-.+|...+|+++|-|-=+||-. +.=+...|-+|-+=|+|||.+
T Consensus 119 Edi~LP~eKVDiIvSEWMGy~Ll~-----------------------------------EsMldsVl~ARdkwL~~~G~i 163 (346)
T KOG1499|consen 119 EDIELPVEKVDIIVSEWMGYFLLY-----------------------------------ESMLDSVLYARDKWLKEGGLI 163 (346)
T ss_pred EEEecCccceeEEeehhhhHHHHH-----------------------------------hhhhhhhhhhhhhccCCCceE
Confidence 334567788999999877666432 233455788999999999998
Q ss_pred E
Q 017439 225 L 225 (371)
Q Consensus 225 v 225 (371)
+
T Consensus 164 ~ 164 (346)
T KOG1499|consen 164 Y 164 (346)
T ss_pred c
Confidence 5
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=87.96 E-value=0.64 Score=44.73 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=17.9
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|..+..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred cCeEEEeCCCccHHHHHHHH
Confidence 46899999999999998886
No 155
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=87.37 E-value=2.4 Score=39.34 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHhhHHHHHHHHHhhcccCceEEE
Q 017439 203 FKNDIESFLNARAQELVPGGLLLL 226 (371)
Q Consensus 203 ~~~D~~~FL~~Ra~EL~pGG~lvl 226 (371)
|..|+..-|..+..+|++|-++|.
T Consensus 133 F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 133 FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 335666678889999999877654
No 156
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=87.34 E-value=11 Score=38.63 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHhhHHHHHHHHHhhcccCceEEEEe
Q 017439 203 FKNDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 203 ~~~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
..+++..+++.=.+-|+|||.+++..
T Consensus 314 ~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 314 ACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34567777777778899999998765
No 157
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=86.71 E-value=7.9 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.5
Q ss_pred EEeeecCCCCcccHHHHH
Q 017439 66 KIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~ 83 (371)
+|+|||||-|..-+.+.+
T Consensus 70 ~VlDLGtGNG~~L~~L~~ 87 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAK 87 (227)
T ss_pred ceeeccCCchHHHHHHHH
Confidence 999999999976665553
No 158
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=86.63 E-value=2.4 Score=39.87 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.8
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
.++-+|+|+||++|.-++.+.
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la 87 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTA 87 (234)
T ss_pred hCCCEEEEecCcccHHHHHHH
Confidence 346799999999999888776
No 159
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.54 E-value=9.9 Score=36.81 Aligned_cols=69 Identities=22% Similarity=0.424 Sum_probs=41.1
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchh----------hhhhcCCCC
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFN----------TLFKSVPLS 132 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn----------~lF~~l~~~ 132 (371)
+++||--.|||||-=.-.+.-.+.++... . . .. .++|+.+|+-..--. .+++.+|..
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~-----~---~--~~---~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~ 162 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK-----L---A--GF---RVKILATDIDLSVLEKARAGIYPSRELLRGLPPE 162 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc-----c---c--CC---ceEEEEEECCHHHHHHHhcCCCChhHhhccCCHH
Confidence 69999999999997655544333333321 0 0 23 689999998654322 222333322
Q ss_pred --cceeeeccCCCc
Q 017439 133 --KKYFATGVPGSF 144 (371)
Q Consensus 133 --~~~f~~gvpgSF 144 (371)
++||.-+.+|+|
T Consensus 163 ~~~ryF~~~~~~~y 176 (268)
T COG1352 163 LLRRYFERGGDGSY 176 (268)
T ss_pred HHhhhEeecCCCcE
Confidence 367777766644
No 160
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=85.57 E-value=3.8 Score=44.90 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=17.3
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017439 65 FKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~ 83 (371)
-+|+|+||++|..|+.+..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~ 558 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAAL 558 (702)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 5899999999999998884
No 161
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=84.29 E-value=3 Score=43.00 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.2
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|+.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 36899999999999988764
No 162
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=82.47 E-value=3.6 Score=40.40 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|+.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999988874
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=82.20 E-value=1.5 Score=42.92 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred ceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCc
Q 017439 64 TFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNND 121 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~ND 121 (371)
.-+|+|+|||.|..|..++. ..++.+++ ++...+ . .+ .++++..|....|
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~-~~~~~~--~--~~---~v~ii~~Dal~~~ 98 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKK-RFQNSP--L--AS---KLEVIEGDALKTE 98 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHH-HHHhcC--C--CC---cEEEEECCHhhhc
Confidence 45899999999999998886 34555555 443211 0 12 5778888776554
No 164
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=81.97 E-value=16 Score=35.42 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.4
Q ss_pred cCCHHHHHHHhhcCCceEEEEEEE
Q 017439 276 YPFLGELMGHIKRNKNFSIEIMNT 299 (371)
Q Consensus 276 ~ps~eE~~~~i~~~g~F~I~~~e~ 299 (371)
-.|.||++++++.-| |+++.-+.
T Consensus 220 eLs~eEi~~l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 220 ELSLEEIKELIEKLG-FEIEKEES 242 (270)
T ss_pred CCCHHHHHHHHHHCC-CEEEEEEE
Confidence 678999999999987 99988776
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=81.82 E-value=3.4 Score=41.04 Aligned_cols=21 Identities=10% Similarity=0.146 Sum_probs=15.8
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
....+|+|+|||+|.-...+.
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa 133 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIG 133 (321)
T ss_pred CCCceEEEecCCccHHHHHHH
Confidence 356899999999996555543
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=80.72 E-value=5.2 Score=37.83 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=18.3
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
..-+|+|+|||+|..|..+.+
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 356899999999999998875
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=80.23 E-value=4.8 Score=38.32 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=18.0
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|..+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999999885
No 168
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=79.88 E-value=2.6 Score=36.28 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.1
Q ss_pred CCCceEEeeecCCCCcccHHHHH
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
...+.+|+|+|||.|..|+.+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35689999999999999998873
No 169
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=78.56 E-value=4.6 Score=39.17 Aligned_cols=134 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhc--CCC-Ccceeee
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKS--VPL-SKKYFAT 138 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~--l~~-~~~~f~~ 138 (371)
....+|+|-.||+|..-+.++..+.+.-.. .+ +.+++..|.-..-....-.. +.. .....-.
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~------------~~---~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNK------------IK---EINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHH------------HC---CEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccc------------cc---cceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 446789999999998877777544332111 22 56888888744332211100 111 1111112
Q ss_pred ccCCCcccccCC-CCceeEEEecCC--cc-ccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHH
Q 017439 139 GVPGSFHGRLFP-ESSLHVAHTSNA--LP-WLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNAR 214 (371)
Q Consensus 139 gvpgSFy~rLfP-~~Svd~~~Ss~a--lH-WLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~R 214 (371)
...-+|-..... ...+|+++++=- .. | ....+... .-|.++ ..... ..|+ .|+..-
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~---~~~~~~~~--~~~~~~--~~~~~------------~~~~-~Fi~~~ 169 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEW---KDEELEKD--ERFKKY--FPPKS------------NAEY-AFIEHA 169 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES----STGGGCTT--CCCTTC--SSSTT------------EHHH-HHHHHH
T ss_pred cccccccccccccccccccccCCCCcccccc---cccccccc--cccccc--CCCcc------------chhh-hhHHHH
Confidence 222355555554 788999999732 22 4 11111110 011111 00001 1222 278888
Q ss_pred HhhcccCceEEEEecC
Q 017439 215 AQELVPGGLLLLLTPT 230 (371)
Q Consensus 215 a~EL~pGG~lvl~~~g 230 (371)
-+-|++||++++.++.
T Consensus 170 l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 170 LSLLKPGGRAAIILPN 185 (311)
T ss_dssp HHTEEEEEEEEEEEEH
T ss_pred HhhcccccceeEEecc
Confidence 8999999999999863
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.48 E-value=1.2 Score=41.07 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.9
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
+.-+|+|+|||+|..++...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH
Confidence 34579999999999999866
No 171
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=77.91 E-value=1.1 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.0
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
+..+++|+|||||-.|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 46899999999999999877
No 172
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=77.51 E-value=2.9 Score=39.50 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=17.6
Q ss_pred CceEEeeecCCCCcccHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~ 82 (371)
+.-+++|+|||+|..|..++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~ 94 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL 94 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH
Confidence 45689999999999999877
No 173
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=76.86 E-value=1.4 Score=43.24 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=15.5
Q ss_pred eEEeeecCCCCcccHHHH
Q 017439 65 FKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~ 82 (371)
-+|+|+|||||-.++...
T Consensus 163 ~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp SEEEEES-TTSHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHH
Confidence 499999999999999877
No 174
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=76.71 E-value=12 Score=36.18 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=41.6
Q ss_pred ceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhh
Q 017439 64 TFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLF 126 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF 126 (371)
.-+|+++|+|.|..|..+++ .++..+++ +... .+ .++++..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~-~~~~-------~~---n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKE-RFAP-------YD---NLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHH-hccc-------cc---ceEEEeCchhcCcchhhc
Confidence 67999999999999999998 56666666 4421 22 689999999999998875
No 175
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=76.54 E-value=8.2 Score=37.28 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.3
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
+..+++|+|.|+|.-|..+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~ 114 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP 114 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh
Confidence 678999999999999988753
No 176
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=75.98 E-value=2.7 Score=35.28 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=32.3
Q ss_pred eeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEe
Q 017439 154 LHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 154 vd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
+|++.|.+..-| ||.. ....-+.+||+.-+.-|+|||+|++.-
T Consensus 2 yDvilclSVtkW--------------------IHLn------------~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKW--------------------IHLN------------WGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp EEEEEEES-HHH--------------------HHHH------------HHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred ccEEEEEEeeEE--------------------EEec------------CcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 688888888888 3432 223567789999999999999999976
No 177
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=72.99 E-value=4.2 Score=37.49 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=16.4
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017439 65 FKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~ 83 (371)
-+|+|+|||+|..++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 5899999999999987663
No 178
>PLN02823 spermine synthase
Probab=72.00 E-value=15 Score=36.77 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=16.8
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
+++-+|+-+|+|.|.....++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCEEEEECCCchHHHHHHH
Confidence 356789999999998776665
No 179
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=69.83 E-value=12 Score=38.22 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+|+|+|||+|..|+.+..
T Consensus 293 ~~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHH
Confidence 36899999999999998764
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=68.53 E-value=2.9 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.5
Q ss_pred CceEEeeecCCCCcccHHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
+..+|+|+|||+|+.+...++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~ 206 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQ 206 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHH
T ss_pred cceEEEEeCCCccHHHHHHHH
Confidence 368999999999999988774
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=68.14 E-value=30 Score=36.23 Aligned_cols=126 Identities=17% Similarity=0.225 Sum_probs=68.6
Q ss_pred CceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCC--cce-eeec
Q 017439 63 STFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLS--KKY-FATG 139 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~--~~~-f~~g 139 (371)
...+|+|++||.|.=|..+.+ .... .=.++.||.-.+=...|-+.+... .++ ....
T Consensus 113 pg~~VLD~CAAPGgKTt~la~---------~l~~------------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~ 171 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAA---------LMNN------------QGAIVANEYSASRVKVLHANISRCGVSNVALTHF 171 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHH---------HcCC------------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 346999999999999988762 2211 114777777766666665555321 122 2223
Q ss_pred cCCCcccccCCCCceeEEE----ecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 140 VPGSFHGRLFPESSLHVAH----TSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~----Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
.+..+ ...+| +++|.|. ||..=.|- +.|+.... -+++..+.+ .+-=..+|..=+
T Consensus 172 D~~~~-~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~~---------------~s~~~v~~l----~~lQ~~iL~~A~ 229 (470)
T PRK11933 172 DGRVF-GAALP-ETFDAILLDAPCSGEGTVR-KDPDALKN---------------WSPESNLEI----AATQRELIESAF 229 (470)
T ss_pred chhhh-hhhch-hhcCeEEEcCCCCCCcccc-cCHHHhhh---------------CCHHHHHHH----HHHHHHHHHHHH
Confidence 33222 11222 3567776 44444442 22432211 112222211 122244688888
Q ss_pred hhcccCceEEEEecCc
Q 017439 216 QELVPGGLLLLLTPTI 231 (371)
Q Consensus 216 ~EL~pGG~lvl~~~gr 231 (371)
+-|+|||+||-.++.-
T Consensus 230 ~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 230 HALKPGGTLVYSTCTL 245 (470)
T ss_pred HHcCCCcEEEEECCCC
Confidence 9999999998888764
No 182
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=68.09 E-value=16 Score=28.48 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHHHHhhcccCceEEEEecCcCCC
Q 017439 210 FLNARAQELVPGGLLLLLTPTIRDG 234 (371)
Q Consensus 210 FL~~Ra~EL~pGG~lvl~~~gr~~~ 234 (371)
.++...+-|+|||.+++........
T Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~~~~ 161 (257)
T COG0500 137 ALRELLRVLKPGGRLVLSDLLRDGL 161 (257)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCC
Confidence 4566667799999999998776543
No 183
>PRK04148 hypothetical protein; Provisional
Probab=67.92 E-value=14 Score=32.05 Aligned_cols=20 Identities=20% Similarity=-0.037 Sum_probs=15.0
Q ss_pred CceEEeeecCCCCc-ccHHHH
Q 017439 63 STFKIADLGCSTGP-NTFIAM 82 (371)
Q Consensus 63 ~~~~IaDlGCs~G~-Ns~~~~ 82 (371)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 45799999999997 444444
No 184
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=67.24 E-value=6.3 Score=36.49 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.9
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..--+|+|+||+.|.=|-.++
T Consensus 68 ~p~~~VlD~G~APGsWsQVav 88 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAV 88 (232)
T ss_pred CCCCEEEEccCCCChHHHHHH
Confidence 346899999999999888777
No 185
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=66.44 E-value=6.7 Score=34.82 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=39.9
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccC
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVP 141 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvp 141 (371)
.+..+++|+|||.|.-|-.++ + +. .+ .-.|+..|+...+=-.....+. .+++-...-
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~--------~-~~---------~~---~~~v~avDl~~~~~~~~~~~i~--~d~~~~~~~ 78 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLL--------Q-RG---------GP---AGRVVAVDLGPMDPLQNVSFIQ--GDITNPENI 78 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHH--------T-ST---------TT---EEEEEEEESSSTGS-TTEEBTT--GGGEEEEHS
T ss_pred ccccEEEEcCCcccceeeeee--------e-cc---------cc---cceEEEEeccccccccceeeee--cccchhhHH
Confidence 467999999999999998887 3 22 11 3478888888772001111110 111111111
Q ss_pred CCcccccCCC--CceeEEEecCCccc
Q 017439 142 GSFHGRLFPE--SSLHVAHTSNALPW 165 (371)
Q Consensus 142 gSFy~rLfP~--~Svd~~~Ss~alHW 165 (371)
. -....++. ..+|+++|=.+..+
T Consensus 79 ~-~i~~~~~~~~~~~dlv~~D~~~~~ 103 (181)
T PF01728_consen 79 K-DIRKLLPESGEKFDLVLSDMAPNV 103 (181)
T ss_dssp H-HGGGSHGTTTCSESEEEE------
T ss_pred H-hhhhhccccccCcceeccccccCC
Confidence 1 12223333 78999888776555
No 186
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=63.59 E-value=59 Score=31.33 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=14.8
Q ss_pred CCCceEEeeecCCCCcccH
Q 017439 61 TSSTFKIADLGCSTGPNTF 79 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~ 79 (371)
.-.+-+|+|+|||.|.-+.
T Consensus 31 ~f~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCCCceEEEecCChHHHHH
Confidence 3457799999999997544
No 187
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=62.49 E-value=25 Score=33.07 Aligned_cols=94 Identities=22% Similarity=0.367 Sum_probs=58.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCCCcceeeeccC
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPLSKKYFATGVP 141 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~~~~~f~~gvp 141 (371)
...++++|+||=+..|.+.. .+ .|.|..-||-+.+ ..+.+.
T Consensus 50 ~~~lrlLEVGals~~N~~s~----------------------~~---~fdvt~IDLns~~-~~I~qq------------- 90 (219)
T PF11968_consen 50 RPKLRLLEVGALSTDNACST----------------------SG---WFDVTRIDLNSQH-PGILQQ------------- 90 (219)
T ss_pred cccceEEeecccCCCCcccc----------------------cC---ceeeEEeecCCCC-CCceee-------------
Confidence 35699999999877776532 12 3455555555433 111100
Q ss_pred CCcccccC---CCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 017439 142 GSFHGRLF---PESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQEL 218 (371)
Q Consensus 142 gSFy~rLf---P~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL 218 (371)
.|.+|=. +++++|+|.+|-.|.+ ||.+.. +| .-|+.-.+-|
T Consensus 91 -DFm~rplp~~~~e~FdvIs~SLVLNf---VP~p~~--------RG------------------------~Ml~r~~~fL 134 (219)
T PF11968_consen 91 -DFMERPLPKNESEKFDVISLSLVLNF---VPDPKQ--------RG------------------------EMLRRAHKFL 134 (219)
T ss_pred -ccccCCCCCCcccceeEEEEEEEEee---CCCHHH--------HH------------------------HHHHHHHHHh
Confidence 2333322 4788999999999998 785321 11 1355556789
Q ss_pred ccCce-----EEEEecC
Q 017439 219 VPGGL-----LLLLTPT 230 (371)
Q Consensus 219 ~pGG~-----lvl~~~g 230 (371)
+|+|. |+++++-
T Consensus 135 ~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPL 151 (219)
T ss_pred CCCCccCcceEEEEeCc
Confidence 99999 8888853
No 188
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=61.84 E-value=34 Score=34.74 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=46.5
Q ss_pred HhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcC
Q 017439 215 AQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRN 289 (371)
Q Consensus 215 a~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~ 289 (371)
=+-+.|||.||++=.|.+-+ |+.|..|=..+.+.|-.+.|. +|+.-+..|.+-+-+-+|.-.
T Consensus 212 w~l~~~gg~lVivErGtp~G-----------f~~I~rAR~~ll~~~~~~~e~--~~~ahiiAPCPH~~~CPl~v~ 273 (484)
T COG5459 212 WNLLAPGGHLVIVERGTPAG-----------FERILRARQILLAPGNFPDEF--NYFAHIIAPCPHQRKCPLQVP 273 (484)
T ss_pred HHhccCCCeEEEEeCCCchh-----------HHHHHHHHHHHhcCCCCcccc--ccceeeeccCCCCCCCCccCC
Confidence 35788999999988776532 788888888888888776554 677777788888777776643
No 189
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.57 E-value=7.6 Score=37.09 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHH
Q 017439 206 DIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGH 285 (371)
Q Consensus 206 D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~ 285 (371)
++..++-.-+.-|+|||.|.++.=..+... +. .+.-.. -|..+..=+++.
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-------~f---~l~ps~--------------------RyAH~~~YVr~~ 252 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDG-------GF---VLGPSQ--------------------RYAHSESYVRAL 252 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCC-------Ce---ecchhh--------------------hhccchHHHHHH
Confidence 345577788899999999998873322211 00 011111 256677778888
Q ss_pred hhcCCceEEEEEEEee
Q 017439 286 IKRNKNFSIEIMNTFT 301 (371)
Q Consensus 286 i~~~g~F~I~~~e~~~ 301 (371)
++..| |+|..++..+
T Consensus 253 l~~~G-l~~i~~~~tt 267 (287)
T COG4976 253 LAASG-LEVIAIEDTT 267 (287)
T ss_pred HHhcC-ceEEEeeccc
Confidence 88877 9998888663
No 190
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=61.55 E-value=6.4 Score=39.51 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCC-------CCcch------HHHHHHHHHHHHHcCCCchhhhcccC
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFST-------PEGTN------FDYLGSCLYDLANMGLIAEEKVDSFN 271 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~-------~~~~~------~~~l~~al~~mv~eGli~~e~~d~fn 271 (371)
+=++++|.+| +=|+|.|.|+=++. +-..-|.+.. ....+ +..=-..|..-+-+|..++.-+|.|.
T Consensus 260 RMLEsYl~Ar-k~l~P~GkMfPT~g-diHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD 337 (517)
T KOG1500|consen 260 RMLESYLHAR-KWLKPNGKMFPTVG-DIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFD 337 (517)
T ss_pred HHHHHHHHHH-hhcCCCCcccCccc-ceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccc
Confidence 5677889999 99999999976653 2222121110 00001 11111233334455777777788887
Q ss_pred cccccC
Q 017439 272 VPMYYP 277 (371)
Q Consensus 272 ~P~Y~p 277 (371)
+-+.+.
T Consensus 338 ~RilmA 343 (517)
T KOG1500|consen 338 IRILMA 343 (517)
T ss_pred cceeec
Confidence 776653
No 191
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=59.63 E-value=10 Score=36.09 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.4
Q ss_pred CCCceEEeeecCCCCcccHHHH
Q 017439 61 TSSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..+..+++|+|+|||..|..++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lL 98 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLL 98 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHH
Confidence 3566899999999999999888
No 192
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=57.92 E-value=12 Score=37.81 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=17.0
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017439 65 FKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~ 83 (371)
-+|+|+|||+|..|+.+.+
T Consensus 235 ~~vLDL~cG~G~~~l~la~ 253 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG 253 (374)
T ss_pred CEEEEccCCccHHHHHHhh
Confidence 4899999999999998875
No 193
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=55.76 E-value=72 Score=30.29 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=36.3
Q ss_pred CceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhh
Q 017439 63 STFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTL 125 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~l 125 (371)
+.-.|+|+|.|.|..|..+.+ ..++.+++ ++.. .+ .+++++.|--.=|....
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~-~~~~-------~~---~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKE-RFAS-------NP---NVEVINGDFLKWDLYDL 93 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHH-HCTT-------CS---SEEEEES-TTTSCGGGH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHH-Hhhh-------cc---cceeeecchhccccHHh
Confidence 568999999999999999986 44555655 4431 33 67888888666554443
No 194
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=54.93 E-value=16 Score=30.61 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.8
Q ss_pred EEeeecCCCCcccHHHH
Q 017439 66 KIADLGCSTGPNTFIAM 82 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~ 82 (371)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 48999999999988776
No 195
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=54.42 E-value=17 Score=33.60 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHHHHH
Q 017439 40 SKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQNII 86 (371)
Q Consensus 40 ~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~~ii 86 (371)
.++-++++..+ +. ...+.-.+|+|||||--|-.+.+.+.
T Consensus 28 LlDaLekd~~e-L~-------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 28 LLDALEKDAAE-LK-------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHH-Hh-------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 45666666665 21 22367899999999998887776544
No 196
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=52.21 E-value=8.8 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=17.5
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-+++|++||+|..++.+++
T Consensus 50 g~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CCEEEEecCCCcHHHHHHHh
Confidence 35899999999999998884
No 197
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=51.99 E-value=2e+02 Score=28.86 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHH
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMG 284 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~ 284 (371)
+..-.+|..-.+-|||||..+ .+|-- ..++... .|. -|-+..-.|.|++..
T Consensus 273 ~NileYi~tI~~iLk~GGvWi--NlGPL----lYHF~d~---------------~g~--------~~~~siEls~edl~~ 323 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWI--NLGPL----LYHFEDT---------------HGV--------ENEMSIELSLEDLKR 323 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEE--eccce----eeeccCC---------------CCC--------cccccccccHHHHHH
Confidence 444558999999999999864 22311 1111100 010 233445789999999
Q ss_pred HhhcCCceEEEEEEEeec
Q 017439 285 HIKRNKNFSIEIMNTFTH 302 (371)
Q Consensus 285 ~i~~~g~F~I~~~e~~~~ 302 (371)
+.+.-| |++++-+.+..
T Consensus 324 v~~~~G-F~~~ke~~Idt 340 (369)
T KOG2798|consen 324 VASHRG-FEVEKERGIDT 340 (369)
T ss_pred HHHhcC-cEEEEeeeeec
Confidence 999876 99998887643
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=51.81 E-value=38 Score=34.03 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.1
Q ss_pred eEEeeecCCCCcccHHHHH
Q 017439 65 FKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~ 83 (371)
-+++|++||+|..|+.+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~ 226 (362)
T PRK05031 208 GDLLELYCGNGNFTLALAR 226 (362)
T ss_pred CeEEEEeccccHHHHHHHh
Confidence 4699999999999996654
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=49.07 E-value=37 Score=33.98 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=15.8
Q ss_pred EEeeecCCCCcccHHHHH
Q 017439 66 KIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~ 83 (371)
+++|+|||+|..|+.+..
T Consensus 200 ~vlDl~~G~G~~sl~la~ 217 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQ 217 (353)
T ss_pred cEEEEeccccHHHHHHHH
Confidence 699999999999996654
No 200
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=47.01 E-value=9.5 Score=35.75 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.0
Q ss_pred CceEEeeecCCCCcccHHH
Q 017439 63 STFKIADLGCSTGPNTFIA 81 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~ 81 (371)
+-.-+||+|||=|...+.+
T Consensus 60 ~kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKL 78 (249)
T ss_pred ccceEEeeccCccchhhhc
Confidence 3478999999999776654
No 201
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=45.53 E-value=16 Score=33.33 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCH
Q 017439 243 GTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFL 279 (371)
Q Consensus 243 ~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~ 279 (371)
+++...+.+.|++||++|+|+-|+.-+-|+=|-|||.
T Consensus 39 ~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 39 QIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred ccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 3467789999999999999999999999999999864
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.33 E-value=15 Score=33.56 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHH
Q 017439 243 GTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLG 280 (371)
Q Consensus 243 ~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~e 280 (371)
|+.-..+.+++..||++|+|.-|+.-+-|+=|-|||.+
T Consensus 26 gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 26 GIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred CCchhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 34456889999999999999999999999999999764
No 203
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=43.66 E-value=11 Score=31.57 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.7
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
.+....+|+|||.|-..-.+.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCCceEEccCCchHHHHHHH
Confidence 457789999999997766655
No 204
>PRK11524 putative methyltransferase; Provisional
Probab=41.55 E-value=34 Score=33.03 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcccCceEEEEe
Q 017439 207 IESFLNARAQELVPGGLLLLLT 228 (371)
Q Consensus 207 ~~~FL~~Ra~EL~pGG~lvl~~ 228 (371)
+..+|+.-.+-|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5667888888999999999864
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=41.53 E-value=54 Score=32.20 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhhcccCceEEEEecCc
Q 017439 205 NDIESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 205 ~D~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
.-+..+|..=.+-|+|||+|++..+-.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 467888999899999999999887543
No 206
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=40.42 E-value=97 Score=29.05 Aligned_cols=19 Identities=26% Similarity=-0.008 Sum_probs=16.0
Q ss_pred ceEEeeecCCCCcccHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~ 82 (371)
-.+|+|+=-|.|.-|.++-
T Consensus 49 g~tVid~~PGgGy~TrI~s 67 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFS 67 (238)
T ss_pred CCEEEEEecCCccHhhhhc
Confidence 3689999999999988765
No 207
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.95 E-value=22 Score=32.52 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHH
Q 017439 243 GTNFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLG 280 (371)
Q Consensus 243 ~~~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~e 280 (371)
+.+|..+.++|+.||++|++..+++-.-|.=|-|||..
T Consensus 38 gIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a 75 (203)
T KOG3433|consen 38 GIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEA 75 (203)
T ss_pred ceehhHHHHHHHHHhccchHHHHHhcccccccccchHH
Confidence 45788899999999999999999999999999999854
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=33.67 E-value=23 Score=31.73 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.6
Q ss_pred EEeeecCCCCcccHHHHH
Q 017439 66 KIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 66 ~IaDlGCs~G~Ns~~~~~ 83 (371)
+|+|.-||.|.||+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~ 19 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR 19 (163)
T ss_dssp EEEETT-TTSHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHH
Confidence 689999999999999885
No 209
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.80 E-value=14 Score=32.95 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=15.4
Q ss_pred CceEEeeecCCCCcccHHH
Q 017439 63 STFKIADLGCSTGPNTFIA 81 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~ 81 (371)
...+++|+|||.|-.++..
T Consensus 48 Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred cCcchhhhcCchhhhHHHh
Confidence 4578999999999988543
No 210
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=32.25 E-value=65 Score=29.14 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhc
Q 017439 245 NFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKR 288 (371)
Q Consensus 245 ~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~ 288 (371)
+|+-+-+-++.|+++|.++++..+ +.....+++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 689999999999999999998776 44558899998888754
No 211
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=32.12 E-value=17 Score=24.05 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=7.5
Q ss_pred ccccCCHHHHHHHh
Q 017439 273 PMYYPFLGELMGHI 286 (371)
Q Consensus 273 P~Y~ps~eE~~~~i 286 (371)
|.|.||.+|++..+
T Consensus 1 Pvf~Pt~eEF~dp~ 14 (34)
T PF02375_consen 1 PVFYPTMEEFKDPI 14 (34)
T ss_dssp EEE---HHHHS-HH
T ss_pred CcccCCHHHHhCHH
Confidence 67888888877665
No 212
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=31.51 E-value=52 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhh
Q 017439 246 FDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIK 287 (371)
Q Consensus 246 ~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~ 287 (371)
...+..+|+.|...|.++.+|-|....|.+.|+.. -+.+|+
T Consensus 13 ~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqq-ARrLLD 53 (81)
T cd08788 13 QHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQ-ARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHcCCccHhhcchhhcCCCChHHH-HHHHHH
Confidence 35678889999999999999999999999998754 344444
No 213
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.05 E-value=42 Score=21.44 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCchhhhc
Q 017439 252 CLYDLANMGLIAEEKVD 268 (371)
Q Consensus 252 al~~mv~eGli~~e~~d 268 (371)
.|.+|-+.|.|+++++.
T Consensus 7 ~L~~l~~~G~IseeEy~ 23 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYE 23 (31)
T ss_pred HHHHHHHcCCCCHHHHH
Confidence 47888999999988764
No 214
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.97 E-value=53 Score=23.55 Aligned_cols=21 Identities=24% Similarity=0.079 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHcCCCchh
Q 017439 245 NFDYLGSCLYDLANMGLIAEE 265 (371)
Q Consensus 245 ~~~~l~~al~~mv~eGli~~e 265 (371)
+-..|.++|.+|+.+|.|+++
T Consensus 11 lG~aL~dtLDeli~~~~I~p~ 31 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQ 31 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHHHHHcCCCCHH
Confidence 346799999999999999865
No 215
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=30.71 E-value=35 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcccCce
Q 017439 197 EAYSAQFKNDIESFLNARAQELVPGGL 223 (371)
Q Consensus 197 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~ 223 (371)
+.+++-|+.||..++..+...||.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567778889999999999999998664
No 216
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=30.26 E-value=31 Score=34.74 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.1
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..-.+++|+|||+|.-|-.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHH
Confidence 345799999999999998777
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=29.32 E-value=37 Score=35.69 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.9
Q ss_pred CceEEeeecCCCCcccHHHHHH
Q 017439 63 STFKIADLGCSTGPNTFIAMQN 84 (371)
Q Consensus 63 ~~~~IaDlGCs~G~Ns~~~~~~ 84 (371)
...+|+|.|||+|...+.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHH
Confidence 5689999999999998887754
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=29.25 E-value=1.8e+02 Score=28.59 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCCceEEeeecCCCCcccHHHHH------------HHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCc
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQ------------NIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNND 121 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~------------~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~ND 121 (371)
...+-.|+++|-|+|..|..+++ ..+..+++ +.+. .|..--+||++.|--.-|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~k-rv~g-------tp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEK-RVQG-------TPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHH-HhcC-------CCccceeeEEecccccCC
Confidence 35578999999999999999998 45566666 5542 121116899999988777
No 219
>PF14904 FAM86: Family of unknown function
Probab=28.09 E-value=47 Score=27.41 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=25.7
Q ss_pred HHhHHHhhhhhhhhh--hcHHHHHHHHHHHHHH
Q 017439 315 ASLSRAAFGGLVGQH--FGYQFVDRIFNYYSTK 345 (371)
Q Consensus 315 a~~iRa~~~~~l~~h--~ge~i~delf~r~~~~ 345 (371)
..+.|+++..+|..+ .+.+.+|+||+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 457889999999866 4789999999999764
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=28.08 E-value=87 Score=29.19 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=31.3
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHHH
Q 017439 24 HSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 24 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~~ 83 (371)
.-|.+-+..+.--..++..+++ |.+...+ ..+-.+|+|||||.|.=|-.+..
T Consensus 14 D~Y~~~Ak~~gyRSRAa~KL~e--l~~k~~i------~~~~~~ViDLGAAPGgWsQva~~ 65 (205)
T COG0293 14 DPYYKKAKKEGYRSRAAYKLLE--LNEKFKL------FKPGMVVVDLGAAPGGWSQVAAK 65 (205)
T ss_pred CHHHHHHhhccccchHHHHHHH--HHHhcCe------ecCCCEEEEcCCCCCcHHHHHHH
Confidence 3466555555444444444443 3322221 24568999999999998887763
No 221
>smart00400 ZnF_CHCC zinc finger.
Probab=27.79 E-value=51 Score=23.59 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.8
Q ss_pred eEEeeecCCCCcccHHHHHHH
Q 017439 65 FKIADLGCSTGPNTFIAMQNI 85 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~i 85 (371)
-..=++||+.|.+.+.+++.+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 346689999999999888644
No 222
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=26.66 E-value=60 Score=32.99 Aligned_cols=49 Identities=10% Similarity=-0.062 Sum_probs=31.9
Q ss_pred CCCCCchHHhhHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCceEEeeecCCCCcccHHHH
Q 017439 20 GDGPHSYAKNSIYQEAIVNGSKGMIAAGIRKTLDLKSLRLDTSSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 20 G~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
..++-.|+-|...-+.+...+...+ .. .....+|+|++||+|.-++.+.
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~----~~----------~~~~~~vLDl~aGsG~~~l~~a 76 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAF----GP----------KLPRESVLDALSASGIRGIRYA 76 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHH----Hh----------hcCCCEEEECCCcccHHHHHHH
Confidence 3355678888776665544333332 11 1124689999999999999876
No 223
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=25.37 E-value=5.9e+02 Score=26.61 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=76.6
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCchhhhhhcCCC---Ccceee
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDFNTLFKSVPL---SKKYFA 137 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDFn~lF~~l~~---~~~~f~ 137 (371)
+..-.||+|.=|+.|.=|-.+. . -.+. .- .||.||--.|--..|-.++.. .+.+-.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IA--------a-lMkn-------~G-----~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~ 297 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIA--------A-LMKN-------TG-----VIFANDSNENRLKSLKANLHRLGVTNTIVS 297 (460)
T ss_pred CCCCCeecchhcCCCchHHHHH--------H-HHcC-------Cc-----eEEecccchHHHHHHHHHHHHhCCCceEEE
Confidence 4557999999999999885444 1 1111 11 589999888776666665542 344555
Q ss_pred eccCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 138 TGVPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 138 ~gvpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
...+..|=+-.||+ |+|=|. =+.|+.-+. -.+|....++.........|.. .| ...|-.=-+-
T Consensus 298 n~D~~ef~~~~~~~-~fDRVL--------LDAPCSGtg----vi~K~~~vkt~k~~~di~~~~~-LQ---r~LllsAi~l 360 (460)
T KOG1122|consen 298 NYDGREFPEKEFPG-SFDRVL--------LDAPCSGTG----VISKDQSVKTNKTVKDILRYAH-LQ---RELLLSAIDL 360 (460)
T ss_pred ccCcccccccccCc-ccceee--------ecCCCCCCc----ccccccccccchhHHHHHHhHH-HH---HHHHHHHHhh
Confidence 66666676666777 777663 334554321 1122222333222222222221 11 1134444577
Q ss_pred cccCceEEEEecCcC
Q 017439 218 LVPGGLLLLLTPTIR 232 (371)
Q Consensus 218 L~pGG~lvl~~~gr~ 232 (371)
+++||.||-.++...
T Consensus 361 v~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 361 VKAGGVLVYSTCSIT 375 (460)
T ss_pred ccCCcEEEEEeeecc
Confidence 899999999987664
No 224
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=25.24 E-value=51 Score=28.41 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHhh
Q 017439 192 EKEVAEAYSAQFKNDIESFLNARAQE 217 (371)
Q Consensus 192 ~~~~~~ay~~Q~~~D~~~FL~~Ra~E 217 (371)
+..+...|.+||++||-..|+.|..+
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~ 35 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGT 35 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44578999999999999999998654
No 225
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=24.89 E-value=1.6e+02 Score=28.37 Aligned_cols=42 Identities=24% Similarity=0.486 Sum_probs=30.5
Q ss_pred HHHHHHhhcccCceEEEEecCcCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhh
Q 017439 210 FLNARAQELVPGGLLLLLTPTIRDGIPMFSTPEGTNFDYLGSCLYDLANMGLIAEEK 266 (371)
Q Consensus 210 FL~~Ra~EL~pGG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~e~ 266 (371)
.|..-++.|+|||.+++..+. .+.+...+..|.+.|.++.+.
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~---------------veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPT---------------VEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCC---------------HHHHHHHHHHHHhcCccchhh
Confidence 467777899999999887754 356666677777777775443
No 226
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=24.78 E-value=81 Score=29.68 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=17.4
Q ss_pred CCceEEeeecCCCCcccHHHHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAMQNI 85 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~~~i 85 (371)
..+++|+++|.|+|.++.-+++.+
T Consensus 17 ~~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 17 SEPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp SS-EEEEEES-TTSHHHHHHHHHH
T ss_pred CcCcEEEEECCCchHHHHHHHHHH
Confidence 457999999999998877666533
No 227
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=24.63 E-value=93 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHh
Q 017439 245 NFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHI 286 (371)
Q Consensus 245 ~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i 286 (371)
+|+-+-+-++.|+++|.++++..+ +.....+++|+-+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 578888888999999999998776 666778888876543
No 228
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=24.23 E-value=1e+02 Score=22.05 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcccCc
Q 017439 196 AEAYSAQFKNDIESFLNARAQELVPGG 222 (371)
Q Consensus 196 ~~ay~~Q~~~D~~~FL~~Ra~EL~pGG 222 (371)
.+.|-+.|++|-...|.+|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 488999999999999999999887644
No 229
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=23.15 E-value=1.2e+02 Score=28.67 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=30.2
Q ss_pred cCCCcccccCCCCceeEEEecCCccccCCCCccccCCCCCCcCCCceeecCCCHHHHHHHHHHHHhhHHHHHHHHH
Q 017439 140 VPGSFHGRLFPESSLHVAHTSNALPWLSKIPKEITNSNSPAWNRGHILCSGFEKEVAEAYSAQFKNDIESFLNARA 215 (371)
Q Consensus 140 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~vP~~l~d~~~~~~nkg~i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra 215 (371)
-||.+|+..||.+-+ + .|+.|.+.. ..|.+| + .+-.+|..+|..+||.=-+
T Consensus 133 ~~~~~~N~~fpg~~i------------a-MP~~L~~~~-v~y~dG------t-----~at~~q~a~DVv~FL~w~a 183 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAI------------A-MPPPLSDGQ-VEYDDG------T-----PATVDQMAKDVVNFLAWAA 183 (219)
T ss_dssp STTSEEETTSTTSEE------------S-S--TSSTTS-S-BTTT------B--------HHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCcc------------c-chhhhhhhc-ccccCC------C-----cchHHHHHHHHHHHHHHHc
Confidence 688899999987543 2 466665531 122223 2 3446788999999998644
No 230
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=69 Score=30.27 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred eeecCCCHHHHHHHHHHHHhhHHHHHHHHHhhcccCceEEEEec
Q 017439 186 ILCSGFEKEVAEAYSAQFKNDIESFLNARAQELVPGGLLLLLTP 229 (371)
Q Consensus 186 i~~~~~~~~~~~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 229 (371)
|||.-+.+++.++|-+ -|+|||+|++-..
T Consensus 166 IhvGAaa~~~pq~l~d---------------qL~~gGrllip~~ 194 (237)
T KOG1661|consen 166 IHVGAAASELPQELLD---------------QLKPGGRLLIPVG 194 (237)
T ss_pred EEEccCccccHHHHHH---------------hhccCCeEEEeec
Confidence 8887666777777774 5999999987664
No 231
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=21.92 E-value=84 Score=23.50 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.8
Q ss_pred cccCcccccCCHHHHHHHhhc---CCceEEEEEE
Q 017439 268 DSFNVPMYYPFLGELMGHIKR---NKNFSIEIMN 298 (371)
Q Consensus 268 d~fn~P~Y~ps~eE~~~~i~~---~g~F~I~~~e 298 (371)
.+|-+|+|..|+||-..+-+- +.+|.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aGf~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccCcEEEEec
Confidence 468899999999998777762 2359987764
No 232
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=21.84 E-value=1.4e+02 Score=27.97 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHcCCCchhhhcccCcccccCCHHHHHHHhhcCC
Q 017439 245 NFDYLGSCLYDLANMGLIAEEKVDSFNVPMYYPFLGELMGHIKRNK 290 (371)
Q Consensus 245 ~~~~l~~al~~mv~eGli~~e~~d~fn~P~Y~ps~eE~~~~i~~~g 290 (371)
-|+....|+..|..+|+.+.+++.+ -+.+|+.++|...|
T Consensus 44 ~WknvekAlenLk~~~~~~l~~I~~-------~~~~~L~elIrpsG 82 (215)
T COG2231 44 SWKNVEKALENLKNEGILNLKKILK-------LDEEELAELIRPSG 82 (215)
T ss_pred cHHHHHHHHHHHHHcccCCHHHHhc-------CCHHHHHHHHhccc
Confidence 5999999999999999999887763 34788999998887
No 233
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=21.73 E-value=3.1e+02 Score=27.71 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCceEEeeecCCCCcccHHHHHHHHHHHHhhhhcccCCCCCCCCCcceeEEEecCCCcCc
Q 017439 61 TSSTFKIADLGCSTGPNTFIAMQNIIEAIELIKYQDDCECEHDNPSGLEFQVFFNDHSNND 121 (371)
Q Consensus 61 ~~~~~~IaDlGCs~G~Ns~~~~~~ii~~i~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~ND 121 (371)
..+.+.|+|||.+.|. -+-.+|+++.. +- .+ +| .+.+.--+.|...
T Consensus 108 g~~~vHIID~~i~~G~----QW~~LiqaLa~-R~--~g-----pp---~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGV----QWPSLIQALAS-RP--GG-----PP---SLRITGIGPPNSG 153 (374)
T ss_pred cCcceEEEeccCCcch----HHHHHHHHHhc-CC--CC-----CC---eEEEEeccCCCCC
Confidence 4578999999999995 44456677766 43 22 67 8889999987654
No 234
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=21.62 E-value=49 Score=22.85 Aligned_cols=16 Identities=25% Similarity=0.795 Sum_probs=13.1
Q ss_pred cccccCCHHHHHHHhh
Q 017439 272 VPMYYPFLGELMGHIK 287 (371)
Q Consensus 272 ~P~Y~ps~eE~~~~i~ 287 (371)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6899999999877664
No 235
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=21.19 E-value=69 Score=31.49 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=17.9
Q ss_pred ceEEeeecCCCCcccHHHHH
Q 017439 64 TFKIADLGCSTGPNTFIAMQ 83 (371)
Q Consensus 64 ~~~IaDlGCs~G~Ns~~~~~ 83 (371)
...++|.+||.|.-|..+++
T Consensus 20 g~~vlD~TlG~GGhS~~il~ 39 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILE 39 (296)
T ss_pred CCEEEEeCcCChHHHHHHHH
Confidence 35899999999999999985
No 236
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=21.02 E-value=45 Score=26.85 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHcCCC
Q 017439 246 FDYLGSCLYDLANMGLI 262 (371)
Q Consensus 246 ~~~l~~al~~mv~eGli 262 (371)
-+-+.+++.+|++||.|
T Consensus 79 ~~~v~~al~~L~~eG~I 95 (102)
T PF08784_consen 79 ENEVRKALDFLSNEGHI 95 (102)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHhCCeE
Confidence 46788899999999988
No 237
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=20.37 E-value=98 Score=30.70 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcccCceEEEEecCc
Q 017439 197 EAYSAQFKNDIESFLNARAQELVPGGLLLLLTPTI 231 (371)
Q Consensus 197 ~ay~~Q~~~D~~~FL~~Ra~EL~pGG~lvl~~~gr 231 (371)
.-|-++==..+..+|.+=-+-|+|||+|++..+-.
T Consensus 213 RI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 213 RIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred eeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 44445555788999999999999999999887643
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=20.19 E-value=1.6e+02 Score=27.62 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=32.8
Q ss_pred eEEeeecCCCCcccHHHHHHHHHHH-------HhhhhcccCCCCCCCCCcceeEEEecCCCcCch
Q 017439 65 FKIADLGCSTGPNTFIAMQNIIEAI-------ELIKYQDDCECEHDNPSGLEFQVFFNDHSNNDF 122 (371)
Q Consensus 65 ~~IaDlGCs~G~Ns~~~~~~ii~~i-------~~~~~~~~~~~~~~~p~~~ei~v~~nDlp~NDF 122 (371)
-..+|||.|+|..|+.+....-..+ +. +|-..+ - | .|-..+++|+-.|--.=||
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a-~~a~eN-~-~-v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRA-RLAEEN-L-H-VPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHH-HHhhhc-C-C-CCCCcceEEEecccccccc
Confidence 4689999999999998876522111 11 222211 0 0 1111278888888888887
No 239
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=20.03 E-value=1.3e+02 Score=27.59 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.0
Q ss_pred CCceEEeeecCCCCcccHHHH
Q 017439 62 SSTFKIADLGCSTGPNTFIAM 82 (371)
Q Consensus 62 ~~~~~IaDlGCs~G~Ns~~~~ 82 (371)
.+..-|++||.|+|..|-.++
T Consensus 47 esglpVlElGPGTGV~TkaIL 67 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAIL 67 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHH
Confidence 445789999999999998777
Done!