Query 017440
Match_columns 371
No_of_seqs 237 out of 1235
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08605 GDPD_GDE5_like_1_plant 100.0 1.6E-51 3.5E-56 388.8 28.8 274 53-332 2-282 (282)
2 cd08580 GDPD_Rv2277c_like Glyc 100.0 3.2E-52 7E-57 387.0 18.9 245 51-334 1-262 (263)
3 cd08601 GDPD_SaGlpQ_like Glyce 100.0 2.1E-50 4.5E-55 376.2 27.8 246 52-339 2-255 (256)
4 cd08606 GDPD_YPL110cp_fungi Gl 100.0 4.4E-50 9.5E-55 379.8 29.6 266 51-340 2-285 (286)
5 cd08610 GDPD_GDE6 Glycerophosp 100.0 2.8E-50 6.2E-55 382.3 27.7 268 34-342 7-285 (316)
6 cd08612 GDPD_GDE4 Glycerophosp 100.0 3.1E-50 6.6E-55 382.8 27.5 252 47-340 23-299 (300)
7 PRK09454 ugpQ cytoplasmic glyc 100.0 3.1E-50 6.8E-55 373.3 26.8 237 50-339 7-246 (249)
8 cd08568 GDPD_TmGDE_like Glycer 100.0 3.5E-50 7.5E-55 368.0 24.2 220 52-334 1-225 (226)
9 cd08609 GDPD_GDE3 Glycerophosp 100.0 8.6E-50 1.9E-54 379.2 27.6 265 34-344 11-287 (315)
10 cd08564 GDPD_GsGDE_like Glycer 100.0 1E-49 2.3E-54 373.1 26.6 245 49-339 2-264 (265)
11 cd08572 GDPD_GDE5_like Glycero 100.0 1.8E-49 3.9E-54 375.8 28.4 272 52-332 1-293 (293)
12 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.5E-49 3.3E-54 364.3 26.1 227 53-332 1-229 (229)
13 cd08565 GDPD_pAtGDE_like Glyce 100.0 2.4E-49 5.3E-54 363.9 25.2 233 53-335 1-234 (235)
14 cd08581 GDPD_like_1 Glyceropho 100.0 2.3E-49 5.1E-54 362.7 24.9 226 53-332 1-229 (229)
15 cd08607 GDPD_GDE5 Glycerophosp 100.0 4.6E-49 1E-53 373.6 27.1 270 52-332 1-290 (290)
16 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 5.8E-49 1.3E-53 365.1 25.5 243 50-331 1-252 (252)
17 cd08563 GDPD_TtGDE_like Glycer 100.0 1.4E-48 3E-53 358.4 26.3 229 51-332 1-230 (230)
18 cd08559 GDPD_periplasmic_GlpQ_ 100.0 3.5E-49 7.6E-54 374.8 22.7 255 51-332 1-296 (296)
19 cd08582 GDPD_like_2 Glyceropho 100.0 1.8E-48 3.9E-53 358.3 25.3 230 53-333 1-232 (233)
20 cd08608 GDPD_GDE2 Glycerophosp 100.0 3.7E-48 8.1E-53 371.7 27.6 250 50-342 1-263 (351)
21 cd08575 GDPD_GDE4_like Glycero 100.0 7.5E-49 1.6E-53 366.9 19.9 248 51-334 1-263 (264)
22 cd08579 GDPD_memb_like Glycero 100.0 4E-48 8.6E-53 352.9 23.8 219 53-332 1-220 (220)
23 cd08567 GDPD_SpGDE_like Glycer 100.0 6.7E-48 1.4E-52 360.6 25.3 251 51-334 1-263 (263)
24 cd08573 GDPD_GDE1 Glycerophosp 100.0 9.4E-48 2E-52 358.0 24.9 235 53-331 1-257 (258)
25 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1.5E-47 3.2E-52 366.0 22.0 260 51-333 1-318 (318)
26 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 4.5E-47 9.7E-52 360.2 24.4 256 51-337 1-299 (300)
27 cd08561 GDPD_cytoplasmic_ScUgp 100.0 1.1E-46 2.5E-51 349.6 26.3 244 53-339 1-249 (249)
28 cd08571 GDPD_SHV3_plant Glycer 100.0 2.6E-47 5.6E-52 361.9 21.4 254 51-337 1-301 (302)
29 PRK11143 glpQ glycerophosphodi 100.0 1.8E-46 3.8E-51 362.4 26.2 271 47-341 23-353 (355)
30 cd08566 GDPD_AtGDE_like Glycer 100.0 2.6E-46 5.7E-51 345.0 25.1 225 52-332 1-240 (240)
31 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 1.2E-45 2.5E-50 355.4 27.9 274 48-337 14-352 (356)
32 cd08570 GDPD_YPL206cp_fungi Gl 100.0 6.6E-46 1.4E-50 341.4 25.1 223 53-332 1-234 (234)
33 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 1.1E-45 2.5E-50 351.7 24.7 251 51-332 1-309 (309)
34 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 4.5E-45 9.6E-50 336.5 25.7 231 53-333 1-236 (237)
35 cd08585 GDPD_like_3 Glyceropho 100.0 1.8E-44 4E-49 331.7 25.0 228 51-329 4-236 (237)
36 cd08613 GDPD_GDE4_like_1 Glyce 100.0 1.7E-43 3.8E-48 331.2 25.2 252 47-335 20-307 (309)
37 PF03009 GDPD: Glycerophosphor 100.0 2.7E-41 5.9E-46 312.4 21.6 247 56-334 1-256 (256)
38 COG0584 UgpQ Glycerophosphoryl 100.0 1.7E-40 3.6E-45 309.6 24.7 248 50-341 5-256 (257)
39 cd08603 GDPD_SHV3_repeat_1 Gly 100.0 2E-40 4.3E-45 310.0 21.7 250 51-337 1-298 (299)
40 cd08556 GDPD Glycerophosphodie 100.0 6.4E-39 1.4E-43 284.6 23.5 189 53-331 1-189 (189)
41 cd08578 GDPD_NUC-2_fungi Putat 100.0 7.8E-37 1.7E-41 287.6 23.3 242 78-332 17-297 (300)
42 cd08555 PI-PLCc_GDPD_SF Cataly 100.0 2.2E-35 4.8E-40 260.5 18.5 168 53-331 1-179 (179)
43 cd08584 PI-PLCc_GDPD_SF_unchar 99.9 3.8E-23 8.2E-28 180.8 17.8 176 77-334 7-191 (192)
44 KOG2258 Glycerophosphoryl dies 99.8 3.6E-20 7.7E-25 178.3 9.1 237 50-341 68-331 (341)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.6 1.2E-14 2.6E-19 132.5 13.7 199 82-331 15-228 (228)
46 cd08576 GDPD_like_SMaseD_PLD G 99.5 1.3E-12 2.7E-17 120.3 18.8 212 77-343 8-250 (265)
47 KOG2421 Predicted starch-bindi 98.9 1.4E-09 3E-14 107.4 6.4 327 1-344 5-367 (417)
48 cd08592 PI-PLCc_gamma Catalyti 98.5 9.7E-08 2.1E-12 86.2 5.2 42 73-114 26-67 (229)
49 PF13653 GDPD_2: Glycerophosph 98.5 1.4E-07 3.1E-12 57.1 3.7 30 302-333 1-30 (30)
50 cd08627 PI-PLCc_gamma1 Catalyt 98.4 2.8E-07 6E-12 82.9 5.1 42 73-114 26-67 (229)
51 KOG2421 Predicted starch-bindi 98.2 1.2E-07 2.6E-12 93.7 -1.6 94 16-115 288-385 (417)
52 cd08597 PI-PLCc_PRIP_metazoa C 97.9 1E-05 2.3E-10 74.6 4.8 40 74-113 27-66 (260)
53 smart00148 PLCXc Phospholipase 97.5 0.00015 3.3E-09 60.8 5.2 41 73-113 25-65 (135)
54 PF10223 DUF2181: Uncharacteri 97.2 0.1 2.2E-06 48.1 19.7 196 75-336 10-242 (244)
55 cd08594 PI-PLCc_eta Catalytic 97.0 0.00075 1.6E-08 61.0 4.6 41 73-113 26-66 (227)
56 cd08595 PI-PLCc_zeta Catalytic 96.8 0.0013 2.8E-08 60.6 4.5 40 74-113 27-66 (257)
57 cd08599 PI-PLCc_plant Catalyti 96.8 0.0016 3.5E-08 59.1 4.9 40 74-113 27-66 (228)
58 cd08632 PI-PLCc_eta1 Catalytic 96.8 0.0015 3.2E-08 60.0 4.6 40 74-113 27-66 (253)
59 cd08631 PI-PLCc_delta4 Catalyt 96.8 0.0015 3.2E-08 60.3 4.6 40 74-113 27-66 (258)
60 cd08633 PI-PLCc_eta2 Catalytic 96.8 0.0015 3.2E-08 60.1 4.6 41 73-113 26-66 (254)
61 cd08558 PI-PLCc_eukaryota Cata 96.8 0.0017 3.7E-08 58.8 4.8 41 73-113 26-66 (226)
62 cd08630 PI-PLCc_delta3 Catalyt 96.8 0.0015 3.3E-08 60.2 4.5 40 74-113 27-66 (258)
63 cd08628 PI-PLCc_gamma2 Catalyt 96.8 0.0018 3.9E-08 59.7 4.8 39 75-113 28-66 (254)
64 cd08596 PI-PLCc_epsilon Cataly 96.8 0.0017 3.8E-08 59.7 4.6 40 74-113 27-66 (254)
65 cd08629 PI-PLCc_delta1 Catalyt 96.7 0.002 4.3E-08 59.4 4.6 40 74-113 27-66 (258)
66 cd08593 PI-PLCc_delta Catalyti 96.7 0.0021 4.6E-08 59.4 4.5 40 74-113 27-66 (257)
67 cd08598 PI-PLC1c_yeast Catalyt 96.7 0.0023 5E-08 58.2 4.6 40 74-113 27-66 (231)
68 cd08626 PI-PLCc_beta4 Catalyti 96.6 0.0022 4.8E-08 59.1 4.4 40 74-113 27-68 (257)
69 cd08623 PI-PLCc_beta1 Catalyti 96.5 0.0031 6.8E-08 58.2 4.4 39 75-113 28-68 (258)
70 cd08624 PI-PLCc_beta2 Catalyti 96.5 0.0032 6.8E-08 58.2 4.3 40 74-113 27-68 (261)
71 cd08591 PI-PLCc_beta Catalytic 96.4 0.0043 9.2E-08 57.3 4.5 40 74-113 27-68 (257)
72 cd08625 PI-PLCc_beta3 Catalyti 96.2 0.0059 1.3E-07 56.6 4.3 40 74-113 27-68 (258)
73 KOG1264 Phospholipase C [Lipid 95.5 0.011 2.4E-07 61.6 3.6 41 73-113 333-373 (1267)
74 PLN02230 phosphoinositide phos 94.5 0.037 8E-07 57.2 4.0 41 74-114 140-180 (598)
75 PF00388 PI-PLC-X: Phosphatidy 93.7 0.56 1.2E-05 39.6 9.1 39 74-112 24-62 (146)
76 KOG0169 Phosphoinositide-speci 93.7 0.064 1.4E-06 56.0 3.8 40 74-113 314-353 (746)
77 PLN02228 Phosphoinositide phos 93.5 0.084 1.8E-06 54.3 4.4 41 73-113 130-171 (567)
78 PLN02952 phosphoinositide phos 92.8 0.13 2.9E-06 53.3 4.5 41 73-113 147-188 (599)
79 PF10566 Glyco_hydro_97: Glyco 92.3 0.53 1.2E-05 44.2 7.4 71 263-334 33-130 (273)
80 PLN02223 phosphoinositide phos 92.1 0.16 3.5E-06 51.7 4.0 37 77-113 135-171 (537)
81 PLN02222 phosphoinositide phos 91.5 0.22 4.7E-06 51.5 4.3 42 73-114 127-169 (581)
82 cd04724 Tryptophan_synthase_al 91.4 11 0.00024 34.7 15.2 38 291-330 177-215 (242)
83 cd00137 PI-PLCc Catalytic doma 91.3 0.35 7.5E-06 45.5 5.2 41 73-113 31-71 (274)
84 PRK13111 trpA tryptophan synth 91.2 1.6 3.4E-05 40.8 9.3 109 231-344 78-197 (258)
85 cd08589 PI-PLCc_SaPLC1_like Ca 90.9 1.1 2.3E-05 43.1 8.0 29 74-102 42-70 (324)
86 PLN02591 tryptophan synthase 89.6 2 4.3E-05 39.9 8.5 42 290-332 178-220 (250)
87 PRK01130 N-acetylmannosamine-6 88.9 14 0.0003 33.3 13.5 137 180-330 3-146 (221)
88 COG0159 TrpA Tryptophan syntha 88.2 4.5 9.8E-05 37.7 9.8 108 230-342 82-200 (265)
89 PF00290 Trp_syntA: Tryptophan 87.4 1.2 2.7E-05 41.4 5.6 108 232-344 77-195 (259)
90 CHL00200 trpA tryptophan synth 87.1 4 8.7E-05 38.2 8.9 108 231-344 81-199 (263)
91 PF04309 G3P_antiterm: Glycero 86.9 2.7 5.9E-05 36.7 7.1 53 288-341 32-90 (175)
92 PLN02591 tryptophan synthase 86.5 5.2 0.00011 37.1 9.2 106 233-344 70-186 (250)
93 cd04726 KGPDC_HPS 3-Keto-L-gul 85.5 7.9 0.00017 34.1 9.7 93 227-330 38-133 (202)
94 PRK13111 trpA tryptophan synth 84.3 19 0.00041 33.6 11.9 199 73-332 23-230 (258)
95 COG0134 TrpC Indole-3-glycerol 83.8 12 0.00027 34.6 10.2 143 171-331 33-184 (254)
96 cd04743 NPD_PKS 2-Nitropropane 82.3 18 0.00039 34.8 11.1 60 264-330 71-130 (320)
97 PF04309 G3P_antiterm: Glycero 82.0 4.7 0.0001 35.3 6.4 142 167-334 27-173 (175)
98 PRK05718 keto-hydroxyglutarate 81.3 41 0.00089 30.3 13.3 118 207-345 29-152 (212)
99 KOG1265 Phospholipase C [Lipid 80.5 1.8 3.8E-05 46.3 3.8 36 78-113 343-380 (1189)
100 cd02812 PcrB_like PcrB_like pr 80.1 24 0.00051 32.1 10.5 60 271-331 144-205 (219)
101 PRK15452 putative protease; Pr 79.6 74 0.0016 32.2 16.3 83 210-307 81-167 (443)
102 COG1954 GlpP Glycerol-3-phosph 78.7 44 0.00095 29.1 11.7 139 167-332 31-175 (181)
103 PF00218 IGPS: Indole-3-glycer 78.7 31 0.00067 32.1 11.1 145 168-331 32-186 (254)
104 PF01081 Aldolase: KDPG and KH 78.6 21 0.00045 31.9 9.5 117 208-345 23-145 (196)
105 TIGR00262 trpA tryptophan synt 78.5 17 0.00038 33.7 9.5 108 231-344 76-195 (256)
106 TIGR01182 eda Entner-Doudoroff 78.3 30 0.00064 31.1 10.5 117 208-345 23-145 (204)
107 PF04131 NanE: Putative N-acet 78.0 36 0.00079 30.1 10.6 66 263-330 101-173 (192)
108 PF09370 TIM-br_sig_trns: TIM- 77.7 16 0.00035 34.0 8.7 95 228-331 64-178 (268)
109 PF03060 NMO: Nitronate monoox 77.6 8.5 0.00018 37.2 7.4 58 268-330 106-163 (330)
110 PRK08227 autoinducer 2 aldolas 77.2 16 0.00036 34.1 8.8 110 230-340 62-189 (264)
111 PRK10550 tRNA-dihydrouridine s 77.2 32 0.00069 33.0 11.1 103 231-338 121-237 (312)
112 cd00452 KDPG_aldolase KDPG and 76.2 52 0.0011 28.9 11.5 113 210-342 21-137 (190)
113 cd08590 PI-PLCc_Rv2075c_like C 75.7 22 0.00047 33.4 9.3 37 75-112 40-76 (267)
114 PRK06015 keto-hydroxyglutarate 75.4 37 0.0008 30.4 10.3 120 208-345 19-141 (201)
115 PRK06552 keto-hydroxyglutarate 75.0 33 0.00071 31.0 10.0 57 268-332 81-137 (213)
116 TIGR03128 RuMP_HxlA 3-hexulose 74.6 46 0.00099 29.4 10.9 93 228-330 38-133 (206)
117 COG1954 GlpP Glycerol-3-phosph 74.3 24 0.00051 30.7 8.2 72 270-341 18-94 (181)
118 cd00405 PRAI Phosphoribosylant 73.5 34 0.00073 30.3 9.7 89 229-333 36-130 (203)
119 TIGR01163 rpe ribulose-phospha 72.8 38 0.00083 29.8 10.0 89 228-329 43-132 (210)
120 COG0352 ThiE Thiamine monophos 72.2 20 0.00043 32.4 7.8 56 269-329 75-130 (211)
121 PRK09196 fructose-1,6-bisphosp 71.0 1E+02 0.0022 30.1 12.8 87 205-303 29-139 (347)
122 cd02911 arch_FMN Archeal FMN-b 71.0 65 0.0014 29.4 11.1 90 232-332 131-222 (233)
123 cd02809 alpha_hydroxyacid_oxid 71.0 62 0.0013 30.7 11.4 111 209-330 85-200 (299)
124 TIGR01769 GGGP geranylgeranylg 71.0 40 0.00088 30.2 9.5 60 269-329 141-204 (205)
125 cd04728 ThiG Thiazole synthase 70.9 66 0.0014 29.7 10.9 135 170-340 72-221 (248)
126 COG0826 Collagenase and relate 70.1 12 0.00027 36.4 6.4 50 290-342 52-111 (347)
127 cd04724 Tryptophan_synthase_al 69.5 39 0.00084 31.0 9.4 56 264-319 93-149 (242)
128 COG3010 NanE Putative N-acetyl 68.7 23 0.00049 31.8 7.1 39 291-330 171-209 (229)
129 TIGR03151 enACPred_II putative 68.5 27 0.00058 33.4 8.3 60 264-329 76-135 (307)
130 cd04729 NanE N-acetylmannosami 68.3 89 0.0019 27.9 15.3 142 176-330 3-150 (219)
131 PRK00208 thiG thiazole synthas 67.8 86 0.0019 29.0 10.9 136 170-341 72-222 (250)
132 COG2200 Rtn c-di-GMP phosphodi 66.7 73 0.0016 29.4 10.7 41 289-331 195-235 (256)
133 PRK14042 pyruvate carboxylase 66.7 39 0.00085 35.5 9.6 113 229-342 62-192 (596)
134 cd04728 ThiG Thiazole synthase 66.6 25 0.00054 32.5 7.2 48 291-341 111-173 (248)
135 cd00381 IMPDH IMPDH: The catal 66.4 69 0.0015 30.9 10.8 60 268-329 99-162 (325)
136 cd00622 PLPDE_III_ODC Type III 65.5 90 0.0019 30.2 11.6 68 265-340 38-108 (362)
137 PRK08883 ribulose-phosphate 3- 65.2 59 0.0013 29.5 9.5 79 264-342 14-105 (220)
138 cd04740 DHOD_1B_like Dihydroor 65.0 1.1E+02 0.0024 28.8 11.8 51 291-342 221-277 (296)
139 PRK08745 ribulose-phosphate 3- 64.4 63 0.0014 29.4 9.5 80 263-342 17-109 (223)
140 PRK07114 keto-hydroxyglutarate 64.2 1.1E+02 0.0025 27.7 12.9 69 268-344 84-154 (222)
141 TIGR03151 enACPred_II putative 62.9 1.3E+02 0.0029 28.6 11.9 106 209-332 78-192 (307)
142 PRK13399 fructose-1,6-bisphosp 62.4 1.6E+02 0.0035 28.8 13.6 87 205-303 29-139 (347)
143 PRK06852 aldolase; Validated 62.1 61 0.0013 31.0 9.2 128 209-341 63-227 (304)
144 PRK09140 2-dehydro-3-deoxy-6-p 61.9 1.2E+02 0.0026 27.1 12.2 58 267-332 75-132 (206)
145 PRK14040 oxaloacetate decarbox 61.5 59 0.0013 34.2 9.8 114 228-342 62-193 (593)
146 PRK12581 oxaloacetate decarbox 61.1 64 0.0014 32.8 9.7 114 228-342 70-201 (468)
147 PLN02334 ribulose-phosphate 3- 60.8 1.1E+02 0.0024 27.7 10.5 87 227-327 51-143 (229)
148 PRK15452 putative protease; Pr 60.8 50 0.0011 33.3 8.9 72 268-341 16-107 (443)
149 PRK01130 N-acetylmannosamine-6 60.1 1.3E+02 0.0027 27.0 10.8 40 290-330 162-202 (221)
150 COG1830 FbaB DhnA-type fructos 59.4 1.5E+02 0.0034 27.6 11.3 112 229-341 63-200 (265)
151 cd04730 NPD_like 2-Nitropropan 59.4 57 0.0012 29.4 8.5 62 264-331 69-130 (236)
152 PF02254 TrkA_N: TrkA-N domain 59.0 85 0.0018 24.5 9.2 106 205-329 8-115 (116)
153 TIGR01768 GGGP-family geranylg 59.0 88 0.0019 28.5 9.3 57 274-331 148-209 (223)
154 cd02803 OYE_like_FMN_family Ol 58.2 1E+02 0.0022 29.4 10.3 107 230-336 195-317 (327)
155 TIGR00736 nifR3_rel_arch TIM-b 58.2 1.2E+02 0.0026 27.7 10.2 66 265-331 151-221 (231)
156 PRK11572 copper homeostasis pr 57.9 77 0.0017 29.3 8.9 111 218-331 20-149 (248)
157 cd04735 OYE_like_4_FMN Old yel 57.7 59 0.0013 31.7 8.7 98 230-328 198-311 (353)
158 PRK00278 trpC indole-3-glycero 57.2 1.6E+02 0.0036 27.3 13.4 141 172-331 40-188 (260)
159 PRK00208 thiG thiazole synthas 57.2 31 0.00068 31.9 6.1 37 291-329 111-150 (250)
160 PRK08005 epimerase; Validated 57.0 94 0.002 28.0 9.1 78 263-342 14-105 (210)
161 PRK10415 tRNA-dihydrouridine s 56.5 1.5E+02 0.0033 28.4 11.2 76 264-339 151-238 (321)
162 PRK02261 methylaspartate mutas 56.3 1.2E+02 0.0025 25.3 9.1 81 263-343 42-134 (137)
163 COG0269 SgbH 3-hexulose-6-phos 56.0 1.2E+02 0.0026 27.5 9.5 100 228-336 42-143 (217)
164 PRK13307 bifunctional formalde 55.9 60 0.0013 32.2 8.3 91 225-327 209-303 (391)
165 PLN02460 indole-3-glycerol-pho 55.9 2E+02 0.0044 27.9 12.9 141 172-331 104-259 (338)
166 cd00331 IGPS Indole-3-glycerol 54.3 1.1E+02 0.0024 27.3 9.3 37 291-328 62-99 (217)
167 PRK08883 ribulose-phosphate 3- 54.0 1.7E+02 0.0037 26.5 10.5 83 226-319 42-126 (220)
168 TIGR01302 IMP_dehydrog inosine 53.5 1.6E+02 0.0035 29.8 11.2 89 230-331 253-357 (450)
169 COG1456 CdhE CO dehydrogenase/ 52.2 92 0.002 30.4 8.5 41 205-248 147-188 (467)
170 TIGR00640 acid_CoA_mut_C methy 52.0 58 0.0012 27.0 6.5 65 264-330 42-112 (132)
171 PF01136 Peptidase_U32: Peptid 51.9 1E+02 0.0022 27.8 8.8 75 264-346 4-82 (233)
172 PRK14057 epimerase; Provisiona 51.9 96 0.0021 28.8 8.5 78 264-342 34-122 (254)
173 PRK05835 fructose-bisphosphate 51.8 2.3E+02 0.0049 27.2 15.1 111 205-327 28-172 (307)
174 cd06828 PLPDE_III_DapDC Type I 51.1 2E+02 0.0044 27.8 11.4 69 265-341 41-112 (373)
175 COG5016 Pyruvate/oxaloacetate 50.6 47 0.001 33.0 6.4 108 230-341 65-193 (472)
176 TIGR01048 lysA diaminopimelate 50.5 2.1E+02 0.0046 28.2 11.6 109 212-340 18-133 (417)
177 PRK07259 dihydroorotate dehydr 50.4 2.2E+02 0.0048 26.8 11.6 51 291-342 224-280 (301)
178 PRK08195 4-hyroxy-2-oxovalerat 50.1 2.5E+02 0.0054 27.2 11.6 106 229-343 64-183 (337)
179 PRK08091 ribulose-phosphate 3- 50.0 1.1E+02 0.0023 28.1 8.4 80 263-343 26-116 (228)
180 cd04732 HisA HisA. Phosphorib 49.8 1.7E+02 0.0038 26.1 10.0 53 289-342 61-119 (234)
181 cd02072 Glm_B12_BD B12 binding 49.5 67 0.0015 26.5 6.4 67 263-330 38-115 (128)
182 PTZ00170 D-ribulose-5-phosphat 49.0 96 0.0021 28.2 8.1 69 227-305 50-119 (228)
183 COG0159 TrpA Tryptophan syntha 49.0 2.3E+02 0.005 26.5 13.9 40 289-331 193-234 (265)
184 cd08586 PI-PLCc_BcPLC_like Cat 48.8 1.4E+02 0.003 28.2 9.3 37 76-112 33-69 (279)
185 cd02071 MM_CoA_mut_B12_BD meth 48.7 82 0.0018 25.4 6.9 64 264-329 39-108 (122)
186 COG0042 tRNA-dihydrouridine sy 48.6 2E+02 0.0043 27.7 10.5 103 232-338 126-241 (323)
187 cd08557 PI-PLCc_bacteria_like 48.5 21 0.00045 33.0 3.7 37 76-112 37-74 (271)
188 TIGR01235 pyruv_carbox pyruvat 48.2 1.5E+02 0.0033 33.8 10.9 112 230-342 592-727 (1143)
189 COG2179 Predicted hydrolase of 48.0 81 0.0017 27.4 6.8 76 269-345 21-109 (175)
190 PRK12330 oxaloacetate decarbox 47.3 1.7E+02 0.0038 30.0 10.3 115 228-343 62-194 (499)
191 TIGR00737 nifR3_yhdG putative 47.2 2.4E+02 0.0052 26.9 10.9 76 264-339 149-236 (319)
192 TIGR01501 MthylAspMutase methy 46.6 1E+02 0.0023 25.6 7.2 80 263-342 40-131 (134)
193 PRK08745 ribulose-phosphate 3- 46.3 2.3E+02 0.005 25.7 10.5 96 227-333 47-144 (223)
194 PRK00865 glutamate racemase; P 46.2 2.4E+02 0.0053 26.0 14.7 77 169-247 17-96 (261)
195 cd06589 GH31 The enzymes of gl 46.1 32 0.0007 31.9 4.6 44 289-333 68-116 (265)
196 PF01136 Peptidase_U32: Peptid 45.9 2.2E+02 0.0048 25.5 10.7 86 207-307 4-93 (233)
197 cd04731 HisF The cyclase subun 45.9 2.3E+02 0.005 25.6 12.5 69 264-332 151-225 (243)
198 TIGR01163 rpe ribulose-phospha 45.9 1.3E+02 0.0028 26.4 8.3 65 264-329 13-85 (210)
199 cd01573 modD_like ModD; Quinol 45.6 1.9E+02 0.004 27.2 9.6 88 230-332 171-260 (272)
200 PRK10558 alpha-dehydro-beta-de 45.4 1.8E+02 0.004 26.9 9.4 64 269-333 34-101 (256)
201 cd06831 PLPDE_III_ODC_like_AZI 45.3 3.2E+02 0.0069 27.1 12.0 101 222-340 14-119 (394)
202 PRK02083 imidazole glycerol ph 45.2 2.4E+02 0.0053 25.7 13.2 69 263-331 154-228 (253)
203 COG0800 Eda 2-keto-3-deoxy-6-p 45.1 2.4E+02 0.0051 25.5 11.1 60 268-335 78-137 (211)
204 cd08588 PI-PLCc_At5g67130_like 44.7 38 0.00083 31.8 4.8 37 74-111 33-69 (270)
205 PRK05848 nicotinate-nucleotide 44.5 2.7E+02 0.006 26.1 11.1 85 230-333 169-260 (273)
206 PF13344 Hydrolase_6: Haloacid 44.5 20 0.00043 28.1 2.5 41 290-332 20-63 (101)
207 cd04736 MDH_FMN Mandelate dehy 44.5 2.9E+02 0.0062 27.2 10.9 95 227-335 222-323 (361)
208 PRK09250 fructose-bisphosphate 44.3 1.2E+02 0.0027 29.5 8.2 122 209-334 95-241 (348)
209 PF03932 CutC: CutC family; I 44.3 85 0.0018 28.1 6.7 112 218-330 19-147 (201)
210 TIGR03849 arch_ComA phosphosul 44.2 1.3E+02 0.0029 27.6 8.1 68 263-331 72-155 (237)
211 COG5564 Predicted TIM-barrel e 44.1 1.8E+02 0.004 26.5 8.6 37 290-329 146-182 (276)
212 COG2185 Sbm Methylmalonyl-CoA 44.1 68 0.0015 27.1 5.7 78 263-342 51-137 (143)
213 PRK07807 inosine 5-monophospha 44.1 1.3E+02 0.0028 30.8 8.8 89 230-331 256-360 (479)
214 PF12957 DUF3846: Domain of un 43.7 47 0.001 25.6 4.5 34 74-112 15-48 (95)
215 PF03537 Glyco_hydro_114: Glyc 43.6 37 0.00081 25.0 3.7 32 273-306 24-55 (74)
216 cd04732 HisA HisA. Phosphorib 43.4 2.4E+02 0.0053 25.2 13.0 68 263-331 147-220 (234)
217 PRK06512 thiamine-phosphate py 43.3 96 0.0021 28.1 7.1 57 269-329 81-137 (221)
218 PRK07998 gatY putative fructos 43.3 2.9E+02 0.0064 26.1 14.7 115 205-331 29-174 (283)
219 KOG4175 Tryptophan synthase al 43.3 1.9E+02 0.0041 26.0 8.5 79 231-314 81-162 (268)
220 cd06810 PLPDE_III_ODC_DapDC_li 43.1 2.9E+02 0.0064 26.6 11.1 90 233-340 15-108 (368)
221 PF00834 Ribul_P_3_epim: Ribul 42.9 1.6E+02 0.0035 26.2 8.4 78 263-342 13-104 (201)
222 cd00564 TMP_TenI Thiamine mono 42.4 82 0.0018 27.0 6.4 57 269-330 66-122 (196)
223 TIGR01303 IMP_DH_rel_1 IMP deh 42.3 2.6E+02 0.0057 28.5 10.8 89 231-332 255-359 (475)
224 PRK03512 thiamine-phosphate py 42.1 1.1E+02 0.0023 27.6 7.1 57 269-330 73-129 (211)
225 PLN02334 ribulose-phosphate 3- 42.1 2.1E+02 0.0045 25.8 9.2 64 264-327 22-92 (229)
226 COG0036 Rpe Pentose-5-phosphat 42.1 2.7E+02 0.0058 25.3 10.4 79 264-342 18-108 (220)
227 cd06839 PLPDE_III_Btrk_like Ty 42.1 3E+02 0.0065 26.7 11.0 51 289-340 61-114 (382)
228 PTZ00170 D-ribulose-5-phosphat 41.9 1.5E+02 0.0032 26.9 8.2 66 264-329 21-94 (228)
229 cd02922 FCB2_FMN Flavocytochro 41.9 2.5E+02 0.0055 27.3 10.1 40 289-330 201-241 (344)
230 PRK06843 inosine 5-monophospha 41.8 2.3E+02 0.0049 28.3 9.9 90 231-333 183-288 (404)
231 TIGR03239 GarL 2-dehydro-3-deo 41.8 1.4E+02 0.0031 27.6 8.1 65 269-334 27-95 (249)
232 PRK15447 putative protease; Pr 41.6 2.5E+02 0.0055 26.6 10.0 76 262-339 15-104 (301)
233 TIGR00693 thiE thiamine-phosph 41.4 89 0.0019 27.2 6.5 56 269-329 67-122 (196)
234 PRK00043 thiE thiamine-phospha 41.3 91 0.002 27.4 6.6 56 269-329 75-130 (212)
235 cd04733 OYE_like_2_FMN Old yel 41.1 2.2E+02 0.0047 27.5 9.6 103 230-335 203-327 (338)
236 PF00289 CPSase_L_chain: Carba 41.1 59 0.0013 26.0 4.8 90 206-303 13-102 (110)
237 PRK13587 1-(5-phosphoribosyl)- 40.9 2.8E+02 0.0061 25.2 12.7 67 263-330 149-221 (234)
238 TIGR03572 WbuZ glycosyl amidat 40.8 1.8E+02 0.0039 26.1 8.6 67 264-330 155-227 (232)
239 TIGR01064 pyruv_kin pyruvate k 40.7 2.5E+02 0.0053 28.7 10.3 57 289-347 259-335 (473)
240 PF02581 TMP-TENI: Thiamine mo 40.6 1.2E+02 0.0025 26.3 7.0 57 269-330 66-122 (180)
241 PF00834 Ribul_P_3_epim: Ribul 40.5 64 0.0014 28.8 5.4 68 227-306 43-111 (201)
242 PF01791 DeoC: DeoC/LacD famil 40.4 40 0.00086 30.7 4.2 121 207-332 21-168 (236)
243 PRK13523 NADPH dehydrogenase N 40.3 2.1E+02 0.0045 27.7 9.3 98 230-331 196-306 (337)
244 PF01207 Dus: Dihydrouridine s 40.2 95 0.002 29.6 6.9 74 264-337 140-225 (309)
245 PRK08649 inosine 5-monophospha 40.0 1.1E+02 0.0023 30.2 7.3 65 264-330 143-215 (368)
246 cd04740 DHOD_1B_like Dihydroor 39.6 2.6E+02 0.0056 26.2 9.8 39 291-329 144-185 (296)
247 cd02810 DHOD_DHPD_FMN Dihydroo 39.6 2.5E+02 0.0055 26.1 9.7 93 232-332 153-274 (289)
248 PRK12331 oxaloacetate decarbox 39.6 2.7E+02 0.0058 28.2 10.2 112 229-342 62-192 (448)
249 cd04734 OYE_like_3_FMN Old yel 39.1 3.6E+02 0.0077 26.1 10.8 49 291-339 275-324 (343)
250 TIGR01304 IMP_DH_rel_2 IMP deh 39.1 1.2E+02 0.0026 29.8 7.5 63 264-328 144-214 (369)
251 TIGR00262 trpA tryptophan synt 39.0 3.2E+02 0.0069 25.3 18.9 41 290-331 187-228 (256)
252 PF06506 PrpR_N: Propionate ca 38.9 1.9E+02 0.0041 24.9 8.1 96 222-332 36-134 (176)
253 cd00331 IGPS Indole-3-glycerol 38.5 2.8E+02 0.0061 24.5 13.4 131 183-330 10-148 (217)
254 TIGR01037 pyrD_sub1_fam dihydr 38.3 3.4E+02 0.0074 25.4 11.9 51 291-342 224-280 (300)
255 PF02679 ComA: (2R)-phospho-3- 38.2 1E+02 0.0022 28.5 6.4 68 263-332 85-169 (244)
256 PRK13585 1-(5-phosphoribosyl)- 38.0 2.5E+02 0.0054 25.3 9.1 46 296-342 72-122 (241)
257 PRK01033 imidazole glycerol ph 38.0 2E+02 0.0044 26.6 8.6 73 263-335 153-231 (258)
258 cd00381 IMPDH IMPDH: The catal 37.9 3.8E+02 0.0081 25.8 14.7 89 230-331 123-227 (325)
259 TIGR01521 FruBisAldo_II_B fruc 37.9 4E+02 0.0086 26.1 14.0 87 205-303 27-137 (347)
260 PRK13802 bifunctional indole-3 37.8 5.5E+02 0.012 27.7 12.9 141 173-331 40-188 (695)
261 PTZ00314 inosine-5'-monophosph 37.8 1.7E+02 0.0037 30.0 8.7 90 230-332 270-375 (495)
262 TIGR02919 accessory Sec system 36.8 4.3E+02 0.0093 26.6 11.2 139 168-350 292-430 (438)
263 COG0019 LysA Diaminopimelate d 36.8 4.3E+02 0.0094 26.2 11.2 102 221-340 27-135 (394)
264 PRK07709 fructose-bisphosphate 36.7 3.7E+02 0.0081 25.4 14.0 113 205-329 29-175 (285)
265 cd03174 DRE_TIM_metallolyase D 36.5 3.3E+02 0.0071 24.7 11.0 53 291-343 119-185 (265)
266 PF00563 EAL: EAL domain; Int 36.5 69 0.0015 28.3 5.1 39 291-331 194-232 (236)
267 COG0635 HemN Coproporphyrinoge 36.3 59 0.0013 32.5 5.0 57 173-241 113-171 (416)
268 PLN02274 inosine-5'-monophosph 36.0 1.4E+02 0.0031 30.7 7.7 60 268-329 253-316 (505)
269 TIGR00737 nifR3_yhdG putative 35.9 2.2E+02 0.0049 27.1 8.8 58 229-298 180-237 (319)
270 PLN02428 lipoic acid synthase 35.7 4.3E+02 0.0093 25.8 12.0 38 291-328 235-280 (349)
271 CHL00162 thiG thiamin biosynth 35.0 2.1E+02 0.0046 26.6 7.8 53 287-340 175-235 (267)
272 cd02067 B12-binding B12 bindin 34.9 1.2E+02 0.0027 23.9 5.9 44 290-335 68-114 (119)
273 PRK10128 2-keto-3-deoxy-L-rham 34.5 2.4E+02 0.0052 26.4 8.5 62 269-331 33-98 (267)
274 cd07943 DRE_TIM_HOA 4-hydroxy- 34.4 3.7E+02 0.0081 24.7 11.4 106 229-343 61-180 (263)
275 CHL00200 trpA tryptophan synth 34.3 3.9E+02 0.0084 24.9 17.8 41 290-331 191-232 (263)
276 cd02801 DUS_like_FMN Dihydrour 34.2 3.3E+02 0.0072 24.1 10.5 70 265-334 141-217 (231)
277 PTZ00413 lipoate synthase; Pro 33.9 4.6E+02 0.01 26.1 10.4 112 208-329 183-329 (398)
278 PRK10669 putative cation:proto 33.8 5.2E+02 0.011 26.8 11.7 122 205-345 427-550 (558)
279 PF08444 Gly_acyl_tr_C: Aralky 33.8 55 0.0012 25.2 3.3 37 289-326 41-77 (89)
280 TIGR00007 phosphoribosylformim 33.7 2.7E+02 0.0059 24.8 8.6 67 264-331 147-219 (230)
281 cd06841 PLPDE_III_MccE_like Ty 33.7 4.6E+02 0.0099 25.5 11.4 50 289-340 64-116 (379)
282 COG1038 PycA Pyruvate carboxyl 33.6 72 0.0016 34.6 5.1 43 262-304 67-109 (1149)
283 PRK13957 indole-3-glycerol-pho 33.0 4E+02 0.0087 24.7 15.2 138 173-331 32-179 (247)
284 PRK08255 salicylyl-CoA 5-hydro 32.7 4.2E+02 0.0091 28.8 11.1 102 230-334 605-721 (765)
285 TIGR00343 pyridoxal 5'-phospha 32.7 4.4E+02 0.0095 25.0 12.4 71 288-359 184-265 (287)
286 COG4943 Predicted signal trans 32.6 4.7E+02 0.01 26.8 10.4 37 287-325 458-494 (524)
287 cd00429 RPE Ribulose-5-phospha 32.5 2.4E+02 0.0051 24.6 7.9 66 263-329 13-86 (211)
288 PF05690 ThiG: Thiazole biosyn 32.4 2E+02 0.0043 26.5 7.1 53 288-341 162-222 (247)
289 PLN02274 inosine-5'-monophosph 32.2 5.1E+02 0.011 26.7 11.0 88 231-331 278-381 (505)
290 cd00429 RPE Ribulose-5-phospha 32.2 3.4E+02 0.0073 23.6 9.7 66 228-306 44-111 (211)
291 PRK02615 thiamine-phosphate py 32.1 1.7E+02 0.0037 28.5 7.3 57 268-329 210-266 (347)
292 PRK00748 1-(5-phosphoribosyl)- 31.9 2.7E+02 0.0058 24.9 8.2 68 263-331 147-221 (233)
293 cd01453 vWA_transcription_fact 31.7 1.8E+02 0.0038 25.3 6.7 54 291-345 127-181 (183)
294 cd06544 GH18_narbonin Narbonin 31.5 2.7E+02 0.0058 25.8 8.2 75 229-303 57-149 (253)
295 PF02784 Orn_Arg_deC_N: Pyrido 31.5 4E+02 0.0086 24.2 11.2 71 263-341 31-104 (251)
296 PF01959 DHQS: 3-dehydroquinat 31.5 2.1E+02 0.0045 28.0 7.6 52 290-343 113-168 (354)
297 PRK09722 allulose-6-phosphate 31.4 3.6E+02 0.0078 24.6 8.8 83 264-347 17-112 (229)
298 PRK13125 trpA tryptophan synth 31.2 4.1E+02 0.0089 24.2 12.2 83 230-319 63-149 (244)
299 PRK05581 ribulose-phosphate 3- 31.1 3.7E+02 0.008 23.6 9.4 66 228-306 48-115 (220)
300 TIGR01108 oadA oxaloacetate de 31.0 2.7E+02 0.0059 29.2 9.0 113 229-342 57-187 (582)
301 PF04131 NanE: Putative N-acet 30.7 3.9E+02 0.0084 23.8 10.1 95 229-329 20-118 (192)
302 PRK09282 pyruvate carboxylase 30.4 2.4E+02 0.0052 29.7 8.5 114 228-342 61-192 (592)
303 PRK03659 glutathione-regulated 30.3 6.3E+02 0.014 26.6 11.7 114 205-335 410-523 (601)
304 cd04727 pdxS PdxS is a subunit 30.2 4.8E+02 0.01 24.7 13.5 67 289-356 182-259 (283)
305 PRK04180 pyridoxal biosynthesi 30.1 2.1E+02 0.0046 27.2 7.1 70 289-359 191-271 (293)
306 cd00945 Aldolase_Class_I Class 30.0 3.5E+02 0.0075 23.0 12.6 116 207-331 15-150 (201)
307 PRK07028 bifunctional hexulose 29.9 4.1E+02 0.0089 26.5 9.9 62 267-330 73-138 (430)
308 PRK05567 inosine 5'-monophosph 29.9 3.9E+02 0.0085 27.2 9.8 89 230-331 257-361 (486)
309 TIGR02708 L_lactate_ox L-lacta 29.7 5.5E+02 0.012 25.3 10.4 97 226-336 213-318 (367)
310 PRK07455 keto-hydroxyglutarate 29.6 3.8E+02 0.0083 23.4 13.6 95 230-344 51-148 (187)
311 KOG2518 5'-3' exonuclease [Rep 29.5 63 0.0014 33.1 3.8 45 291-336 132-176 (556)
312 PRK12737 gatY tagatose-bisphos 29.4 4.9E+02 0.011 24.6 14.0 111 205-328 29-173 (284)
313 cd02810 DHOD_DHPD_FMN Dihydroo 29.4 2.3E+02 0.005 26.4 7.6 39 291-329 152-195 (289)
314 cd06842 PLPDE_III_Y4yA_like Ty 29.0 5.4E+02 0.012 25.6 10.5 66 265-339 50-118 (423)
315 PF05221 AdoHcyase: S-adenosyl 28.4 3E+02 0.0065 25.8 7.8 72 268-340 60-138 (268)
316 PRK13586 1-(5-phosphoribosyl)- 28.2 4.6E+02 0.01 23.8 12.2 67 263-330 147-218 (232)
317 PRK10060 RNase II stability mo 27.7 4.5E+02 0.0098 27.8 10.2 112 205-331 508-640 (663)
318 PRK08005 epimerase; Validated 27.6 4.5E+02 0.0099 23.6 10.0 68 227-306 44-112 (210)
319 COG0826 Collagenase and relate 27.5 4.7E+02 0.01 25.5 9.4 62 264-332 81-146 (347)
320 PLN02229 alpha-galactosidase 27.5 1.9E+02 0.004 29.1 6.7 42 290-332 131-185 (427)
321 PLN02623 pyruvate kinase 27.5 6E+02 0.013 26.7 10.5 56 290-347 366-441 (581)
322 PLN02331 phosphoribosylglycina 27.5 4.3E+02 0.0094 23.6 8.6 45 290-335 39-91 (207)
323 PF02638 DUF187: Glycosyl hydr 27.3 51 0.0011 31.6 2.7 17 290-306 73-89 (311)
324 PF14969 DUF4508: Domain of un 27.0 24 0.00052 27.6 0.3 33 338-370 23-55 (98)
325 PRK00865 glutamate racemase; P 26.9 2.9E+02 0.0064 25.5 7.7 55 230-284 18-76 (261)
326 TIGR00290 MJ0570_dom MJ0570-re 26.9 4.8E+02 0.01 23.7 9.7 98 222-328 39-139 (223)
327 COG2070 Dioxygenases related t 26.8 2.8E+02 0.006 26.9 7.7 56 272-332 101-156 (336)
328 KOG3325 Membrane coat complex 26.6 83 0.0018 26.8 3.4 36 299-337 86-121 (183)
329 PRK12738 kbaY tagatose-bisphos 26.4 5.6E+02 0.012 24.3 14.6 86 205-303 29-131 (286)
330 KOG0538 Glycolate oxidase [Ene 26.0 1.9E+02 0.0041 27.8 6.1 95 226-335 208-312 (363)
331 cd06836 PLPDE_III_ODC_DapDC_li 26.0 6.3E+02 0.014 24.7 11.8 69 263-340 38-109 (379)
332 PRK12290 thiE thiamine-phospha 25.8 2E+02 0.0043 29.0 6.5 57 268-329 270-326 (437)
333 PF03740 PdxJ: Pyridoxal phosp 25.7 1.3E+02 0.0028 27.7 4.8 38 290-329 114-151 (239)
334 TIGR01859 fruc_bis_ald_ fructo 25.7 5E+02 0.011 24.4 9.0 61 267-328 89-171 (282)
335 PRK01222 N-(5'-phosphoribosyl) 25.7 4.8E+02 0.01 23.2 11.2 66 263-332 65-133 (210)
336 TIGR03217 4OH_2_O_val_ald 4-hy 25.6 6.2E+02 0.013 24.4 11.9 106 229-343 63-182 (333)
337 COG3142 CutC Uncharacterized p 25.5 2.5E+02 0.0054 25.8 6.5 111 219-330 21-148 (241)
338 PF10210 MRP-S32: Mitochondria 25.4 53 0.0012 25.7 2.0 18 95-112 4-22 (96)
339 PRK04169 geranylgeranylglycery 25.4 2.9E+02 0.0063 25.3 7.1 58 273-331 152-214 (232)
340 COG4747 ACT domain-containing 25.4 1.5E+02 0.0033 24.2 4.5 44 291-342 19-62 (142)
341 PRK14041 oxaloacetate decarbox 25.2 3.7E+02 0.008 27.4 8.5 113 229-342 61-191 (467)
342 TIGR03239 GarL 2-dehydro-3-deo 25.1 4.4E+02 0.0096 24.3 8.4 39 290-331 193-231 (249)
343 TIGR02311 HpaI 2,4-dihydroxyhe 25.1 4.1E+02 0.0088 24.4 8.2 72 268-340 26-104 (249)
344 PF07788 DUF1626: Protein of u 25.1 82 0.0018 23.1 2.8 17 92-109 2-18 (70)
345 TIGR03010 sulf_tusC_dsrF sulfu 24.9 49 0.0011 26.6 1.8 39 74-112 12-50 (116)
346 PF00478 IMPDH: IMP dehydrogen 24.8 6.7E+02 0.014 24.6 10.2 89 231-332 138-242 (352)
347 cd04824 eu_ALAD_PBGS_cysteine_ 24.7 6.3E+02 0.014 24.3 9.4 126 205-338 166-319 (320)
348 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.5 4.3E+02 0.0093 24.6 8.4 116 228-343 56-188 (275)
349 PRK10840 transcriptional regul 24.5 4.7E+02 0.01 22.7 12.0 21 321-341 100-122 (216)
350 TIGR01684 viral_ppase viral ph 24.3 1.8E+02 0.0039 27.8 5.6 41 290-331 152-196 (301)
351 PF04413 Glycos_transf_N: 3-De 24.3 1.9E+02 0.0041 25.3 5.6 120 207-340 37-166 (186)
352 PLN02535 glycolate oxidase 24.1 6.9E+02 0.015 24.5 10.6 97 226-336 208-313 (364)
353 COG2923 DsrF Uncharacterized p 24.1 80 0.0017 25.6 2.8 49 49-110 2-50 (118)
354 COG0279 GmhA Phosphoheptose is 24.0 4.9E+02 0.011 22.7 8.0 101 228-334 59-170 (176)
355 PF00107 ADH_zinc_N: Zinc-bind 23.9 1.4E+02 0.003 23.7 4.4 28 268-300 7-34 (130)
356 PRK11840 bifunctional sulfur c 23.9 2.5E+02 0.0054 27.1 6.6 50 290-341 184-247 (326)
357 PRK04452 acetyl-CoA decarbonyl 23.9 6.3E+02 0.014 24.4 9.3 15 322-336 289-303 (319)
358 cd02932 OYE_YqiM_FMN Old yello 23.8 6.5E+02 0.014 24.1 10.0 99 230-332 208-322 (336)
359 CHL00162 thiG thiamin biosynth 23.8 2.3E+02 0.005 26.4 6.0 35 292-328 129-163 (267)
360 TIGR03234 OH-pyruv-isom hydrox 23.7 2.8E+02 0.0062 25.0 7.0 45 262-306 14-58 (254)
361 PRK09195 gatY tagatose-bisphos 23.6 6.3E+02 0.014 23.9 14.7 110 205-327 29-172 (284)
362 PRK11165 diaminopimelate decar 23.5 4.4E+02 0.0096 26.2 8.7 68 264-340 58-132 (420)
363 TIGR02764 spore_ybaN_pdaB poly 23.2 1.9E+02 0.0041 25.0 5.4 33 276-311 98-130 (191)
364 PRK14024 phosphoribosyl isomer 23.1 4.4E+02 0.0094 24.0 8.0 69 264-332 148-224 (241)
365 TIGR03099 dCO2ase_PEP1 pyridox 23.1 7.1E+02 0.015 24.3 12.0 51 289-341 79-132 (398)
366 TIGR00338 serB phosphoserine p 22.8 3.2E+02 0.0068 23.9 6.9 39 289-328 90-128 (219)
367 TIGR00167 cbbA ketose-bisphosp 22.6 5.3E+02 0.012 24.4 8.6 77 242-328 77-176 (288)
368 cd04729 NanE N-acetylmannosami 22.6 5.5E+02 0.012 22.8 11.2 40 290-330 166-206 (219)
369 cd02803 OYE_like_FMN_family Ol 22.4 6.6E+02 0.014 23.7 14.8 59 228-298 268-326 (327)
370 COG2100 Predicted Fe-S oxidore 22.3 4E+02 0.0086 26.0 7.4 75 263-341 176-253 (414)
371 cd04738 DHOD_2_like Dihydrooro 22.1 6E+02 0.013 24.3 9.1 49 291-340 268-325 (327)
372 TIGR01858 tag_bisphos_ald clas 22.0 6.8E+02 0.015 23.6 14.8 110 205-327 27-170 (282)
373 cd04737 LOX_like_FMN L-Lactate 22.0 7.5E+02 0.016 24.1 10.4 97 226-336 206-311 (351)
374 PRK08673 3-deoxy-7-phosphohept 22.0 1.7E+02 0.0037 28.4 5.2 41 80-137 281-321 (335)
375 TIGR00559 pdxJ pyridoxine 5'-p 21.9 1.7E+02 0.0036 26.9 4.8 36 290-327 113-148 (237)
376 PF11525 CopK: Copper resistan 21.9 71 0.0015 23.4 1.9 23 97-119 43-65 (73)
377 TIGR00742 yjbN tRNA dihydrouri 21.5 7.2E+02 0.016 23.8 10.1 71 266-338 145-236 (318)
378 PF01645 Glu_synthase: Conserv 21.5 4.2E+02 0.0092 26.1 7.8 100 231-340 192-313 (368)
379 PF05690 ThiG: Thiazole biosyn 21.3 1.9E+02 0.004 26.7 4.9 36 292-329 115-150 (247)
380 COG0113 HemB Delta-aminolevuli 21.3 2.6E+02 0.0056 26.8 5.9 128 205-341 175-329 (330)
381 PF00702 Hydrolase: haloacid d 21.3 2.2E+02 0.0048 24.5 5.5 54 289-343 132-192 (215)
382 KOG0066 eIF2-interacting prote 21.3 57 0.0012 33.0 1.7 33 101-135 751-783 (807)
383 TIGR00067 glut_race glutamate 21.3 4.3E+02 0.0093 24.3 7.6 55 230-284 11-70 (251)
384 PRK11359 cyclic-di-GMP phospho 21.2 5.7E+02 0.012 27.3 9.7 39 291-331 739-777 (799)
385 smart00052 EAL Putative diguan 21.1 1.9E+02 0.0041 25.5 5.1 40 290-331 193-232 (241)
386 cd02930 DCR_FMN 2,4-dienoyl-Co 21.1 6.9E+02 0.015 24.1 9.4 103 230-335 191-311 (353)
387 COG0036 Rpe Pentose-5-phosphat 21.0 6.3E+02 0.014 22.9 9.8 94 226-332 46-142 (220)
388 PRK08091 ribulose-phosphate 3- 21.0 6E+02 0.013 23.2 8.2 65 227-305 56-123 (228)
389 PLN02898 HMP-P kinase/thiamin- 21.0 3.4E+02 0.0074 27.7 7.5 55 269-328 361-415 (502)
390 PRK08610 fructose-bisphosphate 20.9 7.2E+02 0.016 23.5 14.7 115 205-331 29-177 (286)
391 PRK00211 sulfur relay protein 20.8 90 0.002 25.3 2.6 38 75-112 15-52 (119)
392 PRK08999 hypothetical protein; 20.7 2.8E+02 0.0061 26.1 6.5 54 269-328 198-251 (312)
393 PF06673 L_lactis_ph-MCP: Lact 20.6 91 0.002 27.8 2.7 40 74-113 261-301 (347)
394 TIGR01362 KDO8P_synth 3-deoxy- 20.6 7E+02 0.015 23.3 10.6 67 264-330 132-221 (258)
395 PRK11815 tRNA-dihydrouridine s 20.6 5E+02 0.011 25.0 8.2 73 266-340 155-248 (333)
396 COG2089 SpsE Sialic acid synth 20.4 1.4E+02 0.003 28.9 4.1 46 47-102 11-56 (347)
397 cd04864 LigD_Pol_like_1 LigD_P 20.3 6.7E+02 0.014 22.9 9.9 136 26-218 24-175 (228)
398 TIGR01859 fruc_bis_ald_ fructo 20.3 5.7E+02 0.012 24.0 8.3 79 263-343 154-245 (282)
399 cd04731 HisF The cyclase subun 20.3 6.4E+02 0.014 22.7 9.9 53 289-342 59-117 (243)
400 PRK05848 nicotinate-nucleotide 20.3 3.6E+02 0.0078 25.3 6.8 49 290-341 169-222 (273)
401 COG0214 SNZ1 Pyridoxine biosyn 20.3 3.4E+02 0.0075 25.0 6.3 70 289-359 194-274 (296)
402 TIGR03590 PseG pseudaminic aci 20.3 2.8E+02 0.006 25.8 6.2 51 289-340 42-97 (279)
403 cd07944 DRE_TIM_HOA_like 4-hyd 20.2 5.6E+02 0.012 23.7 8.2 105 230-343 58-177 (266)
404 cd04862 PaeLigD_Pol_like PaeLi 20.2 1.8E+02 0.0039 26.6 4.6 66 26-103 24-93 (227)
405 PRK08385 nicotinate-nucleotide 20.1 7.4E+02 0.016 23.3 9.8 84 231-333 171-262 (278)
No 1
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=1.6e-51 Score=388.84 Aligned_cols=274 Identities=49% Similarity=0.755 Sum_probs=211.0
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
+|||||++.+.++...-.-..+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++|++
T Consensus 2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~ 81 (282)
T cd08605 2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA 81 (282)
T ss_pred eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence 79999998754331000012578999999999999999999999999999999999999999999873223899999999
Q ss_pred HHhccCCCCCCCCcCCc-----cccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKP-----MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHAL 207 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~-----~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~ 207 (371)
||++++ +|.++.. .+.........++....+++||||+|+|+.++.++.++||||.+.........+..++
T Consensus 82 EL~~ld----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~ 157 (282)
T cd08605 82 ELKALG----PQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL 157 (282)
T ss_pred HHHhcc----ccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence 999994 4543310 0000000000111122468999999999999878899999998653222223344557
Q ss_pred HHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc
Q 017440 208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (371)
Q Consensus 208 ~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (371)
+.++++++++++.++++|+||++++|+.++++.|.+++++++......+.+.+..++..+..++...++.++++++..+.
T Consensus 158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (282)
T cd08605 158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL 237 (282)
T ss_pred HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence 88999999999889999999999999999999999999999864321222333334556677888899999998876545
Q ss_pred CChHHHHHHHHhCCeEEEeccc--CChHHHHHHHHhcCceEEEeCCh
Q 017440 288 KNPGAIKKIKEAKLCLVSYGEL--NNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~v~~wgtv--n~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.++++++.+|++|+.|++| |+ |++++|.+++ ++||||||||++
T Consensus 238 ~~~~~v~~~~~~Gl~v~vW-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 282 (282)
T cd08605 238 RNPTAVSLVKASGLELGTY-GKLNNDAEAVERQA-DLGVDGVIVDHV 282 (282)
T ss_pred cCcHHHHHHHHcCcEEEEe-CCCCCCHHHHHHHH-HcCCCEEEeCCC
Confidence 7999999999999999999 88 9999999986 799999999986
No 2
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=3.2e-52 Score=386.96 Aligned_cols=245 Identities=19% Similarity=0.232 Sum_probs=189.5
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T 130 (371)
|++|||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|||. +.|.++|
T Consensus 1 p~viaHRG~~~-----------~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~---g~v~~~t 66 (263)
T cd08580 1 PLIVAHRGGTA-----------DAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS---GAVSAYT 66 (263)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC---CChhhCc
Confidence 57999999998 899999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHH
Q 017440 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (371)
Q Consensus 131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v 210 (371)
++||+++ ++|+|+.+..+ . ++ ...+++||||+|+|+.+++ +.++||||.+.. ..+++.+
T Consensus 67 ~~el~~l----d~g~~~~~~~~-----~--~~-~~~~~~iPtL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 125 (263)
T cd08580 67 AAQLATL----NAGYNFKPEGG-----Y--PY-RGKPVGIPTLEQVLRAFPD-TPFILDMKSLPA--------DPQAKAV 125 (263)
T ss_pred HHHHhcC----CCccccccccC-----c--cc-CCCCCcCccHHHHHHhhcC-CeEEEEECCCCc--------HHHHHHH
Confidence 9999999 67877654321 0 01 1235689999999999975 889999997642 1567889
Q ss_pred HHHHHHhcCCCCeEEecCCHHHHHHHHHHCCC-------CCeEEEcCCCCcccCCCCcc-------cHHHHHHHHH--hC
Q 017440 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQST-------YPVFFLTNGGAQTCTDVRRS-------SLDEAIKVCL--AG 274 (371)
Q Consensus 211 l~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~-------~~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~--~~ 274 (371)
+++++++++.++++++||+++.|+.+++..|+ ++++++.......+...... .+...+..+. ..
T Consensus 126 ~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T cd08580 126 ARVLERENAWSRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRRKVTVVETFTL 205 (263)
T ss_pred HHHHHhcCCCCCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccccchheeeecc
Confidence 99999999999999999999999999999994 44444432110000000000 0000011111 12
Q ss_pred CCceEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 275 GLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
++..+.+. ..++++++|+.+|++ |++|++| |||++++|++++ ++||||||||+|+.
T Consensus 206 ~~~~~~~~--~~l~t~~~V~~~h~~~gl~V~~W-TVN~~~~~~~l~-~~GVDgIiTD~P~~ 262 (263)
T cd08580 206 GEGRSPVQ--ATLWTPAAVDCFRRNSKVKIVLF-GINTADDYRLAK-CLGADAVMVDSPAA 262 (263)
T ss_pred cccccccc--cccCCHHHHHHHHhcCCcEEEEE-EeCCHHHHHHHH-HcCCCEEEeCCccc
Confidence 33222222 235799999999999 9999999 999999999996 79999999999985
No 3
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.1e-50 Score=376.20 Aligned_cols=246 Identities=20% Similarity=0.272 Sum_probs=202.6
Q ss_pred eEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCC--cccccccccc
Q 017440 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEG--EIIEKRVTDI 129 (371)
Q Consensus 52 ~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g--~~~~~~i~~~ 129 (371)
+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++ . +.|+++
T Consensus 2 ~iiaHRG~~~-----------~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~---g~v~~~ 67 (256)
T cd08601 2 AVIAHRGASG-----------YAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP---GPVKDY 67 (256)
T ss_pred ceEEcCCCCC-----------CCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC---ceeecC
Confidence 5899999987 89999999999999999999999999999999999999999999998 7 999999
Q ss_pred CHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHH
Q 017440 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEA 209 (371)
Q Consensus 130 T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~ 209 (371)
|++||++++ .|.++...++...+ ....+++||||+|+|+.++++..++||||.+.... .+++.
T Consensus 68 t~~el~~l~----~~~~~~~~~~~~~~------~~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~-------~~~~~ 130 (256)
T cd08601 68 TLAEIKQLD----AGSWFNKAYPEYAR------ESYSGLKVPTLEEVIERYGGRANYYIETKSPDLYP-------GMEEK 130 (256)
T ss_pred cHHHHHhcC----CCccccccCccccc------cccCCccCCCHHHHHHHhccCceEEEEeeCCCCCC-------CHHHH
Confidence 999999995 45544332221110 01357899999999999987889999999764321 35678
Q ss_pred HHHHHHHhcCC------CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc
Q 017440 210 ILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (371)
Q Consensus 210 vl~~l~~~~~~------~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 283 (371)
++++++++++. ++++|+||+++.++.+++..|++++++++...... ......++.+.. ++.++++++
T Consensus 131 v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~ 203 (256)
T cd08601 131 LLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA------ETYDKWLDEIKE-YAIGIGPSI 203 (256)
T ss_pred HHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc------ccchhHHHHHHh-cCeEeCCch
Confidence 88999999887 89999999999999999999999999987542110 011233444554 677777665
Q ss_pred ccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 284 RAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 284 ~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
. .+++++++.+|++|+.|++| |+|+.++|.+++ ++||||||||+|+.+++++
T Consensus 204 ~--~~~~~~v~~~~~~g~~v~~w-Tvn~~~~~~~l~-~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 204 A--DADPWMVHLIHKKGLLVHPY-TVNEKADMIRLI-NWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred h--hcCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-hcCCCEEEeCCHHHHHHhh
Confidence 4 35899999999999999999 999999999986 7999999999999998875
No 4
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=4.4e-50 Score=379.81 Aligned_cols=266 Identities=35% Similarity=0.527 Sum_probs=209.3
Q ss_pred ceEEecCCCCCCccCCchhhhcccc--------cchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIK--------ENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII 122 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~P--------ENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~ 122 (371)
+.||||||+++ .+| |||++||+.|+++|+|+||+|||+||||++||+||.+++|+ ++.
T Consensus 2 ~~iiaHRG~~~-----------~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~-- 67 (286)
T cd08606 2 VQVIGHRGLGK-----------NTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD-- 67 (286)
T ss_pred ceEEEeCCCCC-----------CcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC--
Confidence 67999999998 677 99999999999999999999999999999999999999995 665
Q ss_pred cccccccCHHHHhccCCCCCCCC-cCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccch--
Q 017440 123 EKRVTDITLAEFLSYGPQNDPEN-VGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYT-- 199 (371)
Q Consensus 123 ~~~i~~~T~~eL~~l~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~-- 199 (371)
+.|.++|++||++++.. +.+. ++...|.....| ....++||||+|+|+.+++++.++||||.+......
T Consensus 68 -~~v~~lt~~eL~~ld~~-~~~~~~~~~~~~~~~~g------~~~~~~iptL~evl~~~~~~~~l~IEiK~~~~~~~~~~ 139 (286)
T cd08606 68 -VPIHDLTLEQFLHLSRM-KYTVDFKKKGFKGNSRG------HSIQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEE 139 (286)
T ss_pred -CccccCCHHHHHhhhcc-cccccccccCCCCcccc------cccccCCCcHHHHHHhCCCccceEEEEecCCcchhhhc
Confidence 89999999999998421 1221 111111100000 001257999999999998789999999986432110
Q ss_pred -----hHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhC
Q 017440 200 -----EEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG 274 (371)
Q Consensus 200 -----~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (371)
....+.+++.+++.++++++.++++|+||+++.|+.++++.|++|+++++........+.+...+.....++...
T Consensus 140 ~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (286)
T cd08606 140 EVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRAASLQEAIRFAKQW 219 (286)
T ss_pred ccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchhhcHHHHHHHHHHC
Confidence 012346788999999999999999999999999999999999999999975432222222223345556778888
Q ss_pred CCceEecccccccCChHHHHHHHHhCCeEEEeccc--CChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 275 GLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL--NNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtv--n~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
++.++++.......++++++.+|++|+.|++| || |++++|.+++ ++||||||||+|+.+++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~W-Tv~~n~~~~~~~l~-~~GVdgIiTD~p~~~~~~~~ 285 (286)
T cd08606 220 NLLGLVSAAEPLVMCPRLIQVVKRSGLVCVSY-GVLNNDPENAKTQV-KAGVDAVIVDSVLAIRRGLT 285 (286)
T ss_pred CCeEEEechHHhhhChHHHHHHHHCCcEEEEE-CCccCCHHHHHHHH-HcCCCEEEECCHHHHHHHhc
Confidence 99888776555556899999999999999999 99 9999999986 79999999999999998875
No 5
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=2.8e-50 Score=382.31 Aligned_cols=268 Identities=15% Similarity=0.167 Sum_probs=209.0
Q ss_pred CCCccccccccCCCCCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 34 GVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
+..++|+-++... ++.+.||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.++
T Consensus 7 ~~~~~~~~~~~~~-~~~~~IiAHRGa~~-----------~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL 74 (316)
T cd08610 7 GIYSPCIREKETL-GPKPTIIGHRGAPM-----------LAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTL 74 (316)
T ss_pred CCCchhhcccccc-CCCCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCcc
Confidence 3668899877776 77788999999998 89999999999999999999999999999999999999999
Q ss_pred ccccCCccc-----cccccccCHHHHhccCCCCCCCCcCCccccccCCCc-cc--cccccCCCCccCHHHHHHhcCC-Cc
Q 017440 114 FTKDEGEII-----EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGR-IF--EWKVEKDTPLCTLQEAFEKVDQ-SV 184 (371)
Q Consensus 114 ~r~t~g~~~-----~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~-~~--~~~~~~~~~iptL~evL~~~~~-~~ 184 (371)
+|+|||... ++.|.++|++||+++ ++|+||.+..+ ...++ .+ ......+++||||+|+|+.+++ +.
T Consensus 75 ~Rtt~~~~~~~~~~~~~V~~~TlaEL~~l----d~g~wf~~~~~-~~~~~~~~~~~~~~~~~e~IPTLeEvL~~~~~~~~ 149 (316)
T cd08610 75 KRTTNIGEVQPESACENPAFFNWDFLSTL----NAGKWFVKPRP-FYNMKPLSEADKERARNQSIPKLSNFLRLAEKENK 149 (316)
T ss_pred ccccCCCCccccccccchhhCCHHHHhhC----CCCCccCcccc-cccccccccccccccCCCCCCCHHHHHHHhHhcCc
Confidence 999998521 136999999999999 67887653210 00000 00 0012357899999999999974 68
Q ss_pred eEEEEeccCCc-ccchhHHHHHHHHHHHHHH-HHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcc
Q 017440 185 GFNVELKFDDQ-LVYTEEELTHALEAILKVV-FEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRS 262 (371)
Q Consensus 185 ~l~iEiK~~~~-~~~~~~~~~~~~~~vl~~l-~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~ 262 (371)
.++||||.+.. .++. ..+++.+++.+ +++++.+++++ ||+...++.+++..|+++.++... .
T Consensus 150 ~l~IEIK~~~~~~~~~----~~~~~~v~~~i~~~~~~~~~~v~-sf~~~~l~~~~~~~P~~~~~l~~~-----------~ 213 (316)
T cd08610 150 LVIFDLYRPPPKHPYR----HTWIRRVLEVILNEVGIEQHLVL-WLPAHDRQYVQSVAPGFKQHVGRK-----------V 213 (316)
T ss_pred eEEEEeCCCcccCcch----hHHHHHHHHHHHHHcCCCCCEEE-EcCHHHHHHHHHHCcchhhhhccc-----------c
Confidence 89999997532 2221 13566677775 67788877766 588999999999999988654321 0
Q ss_pred cHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhh
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDF 342 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~ 342 (371)
.+ ......++.++++++.. +++++++.+|++|++|++| |||++++|.++. ++||||||||+|+.+.++.+.+
T Consensus 214 ~~----~~l~~~~~~~l~~~~~~--l~~~~v~~a~~~Gl~V~vW-TVNd~~~~~~l~-~~GVDgIiTD~P~~l~~~~~~~ 285 (316)
T cd08610 214 PI----ETLLKNNISILNLAYKK--LFSNDIRDYKAANIHTNVY-VINEPWLFSLAW-CSGIHSVTTNNIHLLKQLDHPH 285 (316)
T ss_pred cH----HHHHHcCCeEEccchhh--CCHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-hCCcCEEEeCCHHHHHHhhchh
Confidence 11 22345688888877654 5899999999999999999 999999999986 7999999999999987665443
No 6
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=3.1e-50 Score=382.79 Aligned_cols=252 Identities=19% Similarity=0.288 Sum_probs=196.7
Q ss_pred CCCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccc
Q 017440 47 KFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRV 126 (371)
Q Consensus 47 ~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i 126 (371)
...++.+|||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|||+ +.|
T Consensus 23 ~~~~~~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~---g~V 88 (300)
T cd08612 23 SPFPCRHISHRGGSG-----------ENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD---KLV 88 (300)
T ss_pred cCCCCCEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC---ccc
Confidence 366789999999998 899999999999999999999999999999999999999999999998 999
Q ss_pred cccCHHHHhccCCCCC----CCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHH
Q 017440 127 TDITLAEFLSYGPQND----PENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEE 202 (371)
Q Consensus 127 ~~~T~~eL~~l~~~~~----~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~ 202 (371)
+++|++||++++...+ .|.|+. ....+++||||+|+|+.++ ++.++||||.+..
T Consensus 89 ~~~t~~eL~~l~~~~~~~~~~~~~~~--------------~~~~g~~IPtL~EvL~~~~-~~~lnIEiK~~~~------- 146 (300)
T cd08612 89 SDLNYADLPPYLEKLEVTFSPGDYCV--------------PKGSDRRIPLLEEVFEAFP-DTPINIDIKVEND------- 146 (300)
T ss_pred ccCCHHHHhhccccccccccCCcccc--------------ccCCCCCCCCHHHHHHhCC-CCeEEEEECCCch-------
Confidence 9999999999843211 121111 1246789999999999995 6899999997642
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCC----------CcccCCCCcccHHHH--HHH
Q 017440 203 LTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG----------AQTCTDVRRSSLDEA--IKV 270 (371)
Q Consensus 203 ~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~----------~~~~~~~~~~~~~~~--~~~ 270 (371)
.+++.++++++++++.++++++||+++.|+.+++..|+++++++.... ...+.......+... ...
T Consensus 147 --~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (300)
T cd08612 147 --ELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIPMPSIF 224 (300)
T ss_pred --HHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCccccccccchhhh
Confidence 467889999999999999999999999999999999999999864320 000000000000000 000
Q ss_pred HHhC---------CCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 271 CLAG---------GLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 271 ~~~~---------~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
.... ++.... .....+++++++.+|++|+.|++| |||++++|.+++ ++||||||||+|+.+.+++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 225 LKTYFPKSMSRLNRFVLFL--IDWLLMRPSLFRHLQKRGIQVYGW-VLNDEEEFERAF-ELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred hhhcccccccccccceecc--cccccCCHHHHHHHHHCCCEEEEe-ecCCHHHHHHHH-hcCCCEEEeCCHHHHHHHHh
Confidence 0111 111111 122346999999999999999999 999999999996 79999999999999998875
No 7
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=3.1e-50 Score=373.29 Aligned_cols=237 Identities=19% Similarity=0.241 Sum_probs=193.3
Q ss_pred CceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcccccccccc
Q 017440 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDI 129 (371)
Q Consensus 50 ~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~ 129 (371)
.|.+|||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|. +.|.++
T Consensus 7 ~~~iiaHRG~~~-----------~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~---~~v~~~ 72 (249)
T PRK09454 7 YPRIVAHRGGGK-----------LAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW---GVAGEL 72 (249)
T ss_pred CCeEEECCCCCC-----------CCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC---CchhhC
Confidence 479999999998 899999999999999999999999999999999999999999999997 999999
Q ss_pred CHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccchhHHHHHHHH
Q 017440 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALE 208 (371)
Q Consensus 130 T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~ 208 (371)
||+||+++ +.|.|+.+. ..+++||||+|+|+.++ .++.++||+|...... . ...+
T Consensus 73 t~~el~~l----~~~~~~~~~--------------~~~~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~---~---~~~~ 128 (249)
T PRK09454 73 TWQDLAQL----DAGSWFSAA--------------FAGEPLPTLSQVAARCRAHGMAANIEIKPTTGRE---A---ETGR 128 (249)
T ss_pred CHHHHHhc----CCCCccCCC--------------CCCCcCCCHHHHHHHHHhcCCEEEEEECCCCCcc---h---hHHH
Confidence 99999999 456554332 35689999999999996 4789999999753211 1 1122
Q ss_pred HHHHHHHHh--cCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440 209 AILKVVFEH--AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 209 ~vl~~l~~~--~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 286 (371)
.+..+++.. +..++++++||+++.|..+++..|++++++++.... ..+ ...+...++..+++++..
T Consensus 129 ~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~--------~~~---~~~~~~~~~~~~~~~~~~- 196 (249)
T PRK09454 129 VVALAARALWAGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWP--------DDW---LELTRRLGCVSLHLNHKL- 196 (249)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEecccc--------ccH---HHHHHhcCCeEEeccccc-
Confidence 222223332 455789999999999999999999999999875321 111 233456677777776554
Q ss_pred cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 287 FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 287 ~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
+++++++.+|++|++|++| |||++++|.+++ ++|||||+||+|+.+...+
T Consensus 197 -~~~~~v~~~~~~g~~v~~W-Tvn~~~~~~~l~-~~GVdgIiTD~p~~~~~~~ 246 (249)
T PRK09454 197 -LDEARVAALKAAGLRILVY-TVNDPARARELL-RWGVDCICTDRIDLIGPDF 246 (249)
T ss_pred -CCHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEEEeCChHhcCccc
Confidence 5999999999999999999 999999999986 7999999999999876543
No 8
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=3.5e-50 Score=367.95 Aligned_cols=220 Identities=27% Similarity=0.338 Sum_probs=188.2
Q ss_pred eEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCH
Q 017440 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITL 131 (371)
Q Consensus 52 ~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~ 131 (371)
+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|. +.|+++|+
T Consensus 1 ~iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~---g~v~~~t~ 66 (226)
T cd08568 1 IILGHRGYRA-----------KYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD---LKVKELTY 66 (226)
T ss_pred CEEeccCCCC-----------CCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC---ceeecCCH
Confidence 4899999998 899999999999999999999999999999999999999999999997 99999999
Q ss_pred HHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 132 AEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 132 ~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
+||++++. .+++||||+|+|+.++++..++||||.+. .++.++
T Consensus 67 ~eL~~l~~--------------------------~g~~iPtL~evl~~~~~~~~l~iEiK~~~-----------~~~~~~ 109 (226)
T cd08568 67 KELKKLHP--------------------------GGELIPTLEEVFRALPNDAIINVEIKDID-----------AVEPVL 109 (226)
T ss_pred HHHhhCCC--------------------------CCCcCCCHHHHHHhcCCCcEEEEEECCcc-----------HHHHHH
Confidence 99999842 25789999999999987789999999752 356788
Q ss_pred HHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc-----
Q 017440 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI----- 286 (371)
Q Consensus 212 ~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----- 286 (371)
++++++++.++++++||+++.++.+++..|+++++++....... .....+++..++.++++++...
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEG---------FSIPELHEKLKLYSLHVPIDAIGYIGF 180 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccc---------cCHHHHHHhcCCcEeccchhhhccccc
Confidence 89999999999999999999999999999999999998542110 1112344556777776654321
Q ss_pred cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 287 FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 287 ~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
..++++++.+|++|++|++| |||+++++.++. .+ |||||||+|+.
T Consensus 181 ~~~~~~v~~~~~~G~~v~~W-Tvn~~~~~~~l~-~~-vdgiiTD~p~~ 225 (226)
T cd08568 181 EKFVELLRLLRKLGLKIVLW-TVNDPELVPKLK-GL-VDGVITDDVEK 225 (226)
T ss_pred cccHHHHHHHHHCCCEEEEE-cCCCHHHHHHHH-hh-CCEEEccCccc
Confidence 13589999999999999999 999999998875 45 99999999975
No 9
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=8.6e-50 Score=379.20 Aligned_cols=265 Identities=14% Similarity=0.170 Sum_probs=208.2
Q ss_pred CCCccccccccCCCCCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 34 GVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
+..++|.+++..+ ++++.||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++
T Consensus 11 ~~~~~~~~~~~~~-~~~~~IIAHRGas~-----------~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL 78 (315)
T cd08609 11 AICSPCIMEENNL-PPKPALVGHRGAPM-----------LAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGL 78 (315)
T ss_pred hccCccccccccc-CCCCeEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcc
Confidence 4567888888775 44679999999998 89999999999999999999999999999999999999999
Q ss_pred ccccCCccccc--------cccccCHHHHhccCCCCCCCCcCCccccccCCCccc---cccccCCCCccCHHHHHHhcC-
Q 017440 114 FTKDEGEIIEK--------RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIF---EWKVEKDTPLCTLQEAFEKVD- 181 (371)
Q Consensus 114 ~r~t~g~~~~~--------~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~---~~~~~~~~~iptL~evL~~~~- 181 (371)
+|+|||. + .|.++|++||+++ ++|+||.+.++-.. ++.. ......+++||||+|+|+.++
T Consensus 79 ~Rtt~~~---g~~~~~~~~~V~dlTlaEL~~l----d~g~wf~~~~~~~~-~~~~~~~~~~~~~ge~IPTL~EvL~~~~~ 150 (315)
T cd08609 79 LRTTNVK---DVFPGRDAAGSNNFTWTELKTL----NAGSWFLERRPFWT-LSSLSEEDRREADNQTVPSLSELLDLAKK 150 (315)
T ss_pred cccCCCC---CCccccccccHhhCCHHHHhhC----CCCcccCccccccc-ccccccccccccCCCCCCCHHHHHHHHHh
Confidence 9999986 4 3899999999999 57777654311000 0000 000135789999999999997
Q ss_pred CCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCc
Q 017440 182 QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRR 261 (371)
Q Consensus 182 ~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~ 261 (371)
.++.++||||...... .....+.+.+++.++++++..+.++ +++...++.+++..|++++++....
T Consensus 151 ~~~~l~IEIK~~~~~~---~~~~~f~~~vl~~i~~~~~~~~~v~-~~~~~~l~~~~~~~P~~~~~~~~~~---------- 216 (315)
T cd08609 151 HNVSIMFDLRNENNSH---VFYSSFVFYTLETILKLGIPPDKVW-WLPDEYRHDVMKMEPGFKQVYGRQK---------- 216 (315)
T ss_pred cCCEEEEEeCCCCCCC---ccHHHHHHHHHHHHHHcCCCcceEE-EeCHHHHHHHHHhCcCceeecccch----------
Confidence 4788999999763210 1123567889999999986543333 3478889999999999998653210
Q ss_pred ccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440 262 SSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
.....++.++++++.. +++++++.+|++|++|++| |||++++|.+++ ++||||||||+|+.+.+.++.
T Consensus 217 --------~~~~~~~~~i~~~~~~--l~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVDgIiTD~P~~l~~~~~~ 284 (315)
T cd08609 217 --------EMLMDGGNFMNLPYQD--LSALEIKELRKDNVSVNLW-VVNEPWLFSLLW-CSGVSSVTTNACQLLKDMSKP 284 (315)
T ss_pred --------hhHhcCCeEEeccccc--CCHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-hcCCCEEEcCCHHHHHHhhhh
Confidence 0112466777776654 5899999999999999999 999999999996 799999999999999999888
Q ss_pred hhc
Q 017440 342 FIK 344 (371)
Q Consensus 342 ~~~ 344 (371)
+..
T Consensus 285 ~~~ 287 (315)
T cd08609 285 IWL 287 (315)
T ss_pred hhh
Confidence 754
No 10
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1e-49 Score=373.13 Aligned_cols=245 Identities=22% Similarity=0.224 Sum_probs=204.8
Q ss_pred CCceEEecCCCCCCccCCchhhhcc--cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcc--------cccC
Q 017440 49 PKFVVMGHRGSGMNMLQSSDQRMKS--IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF--------TKDE 118 (371)
Q Consensus 49 ~~~~iiAHRG~~~~~~~~~~~~~~~--~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~--------r~t~ 118 (371)
.+|.|+||||+++ . +||||++||++|++.|+|+||+|||+||||++||+||.+++ |+++
T Consensus 2 ~~~~iiaHRG~~~-----------~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~ 70 (265)
T cd08564 2 VRPIIVGHRGAGC-----------STLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDS 70 (265)
T ss_pred CCceEEEeCCCCC-----------CCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCC
Confidence 4689999999987 5 99999999999999999999999999999999999998655 4677
Q ss_pred CccccccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccc
Q 017440 119 GEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVY 198 (371)
Q Consensus 119 g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~ 198 (371)
|. +.|+++|++||+++ ++|+|+... +.. .....+++||||+|+|+.+++++.++||||.+..
T Consensus 71 ~~---~~v~~~t~~el~~l----~~~~~~~~~------~~~--~~~~~~~~iptL~evl~~~~~~~~l~iEiK~~~~--- 132 (265)
T cd08564 71 GF---KNINDLSLDEITRL----HFKQLFDEK------PCG--ADEIKGEKIPTLEDVLVTFKDKLKYNIELKGREV--- 132 (265)
T ss_pred Cc---cchhhCcHHHHhhc----ccCcccccC------ccc--ccccCCccCCCHHHHHHHhccCcEEEEEeCCCch---
Confidence 76 99999999999999 456554321 000 0123578999999999999888999999997641
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCeEEecCCH-HHHHHHHHHCCC---CCeEEEcCCCCcccCCCCcccHHHHHHHHHhC
Q 017440 199 TEEELTHALEAILKVVFEHAQGRPIMFSSFQP-DAALLIRKLQST---YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG 274 (371)
Q Consensus 199 ~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~-~~l~~l~~~~p~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (371)
.+++.++++++++++.++++|+||++ +.++++++..|+ +++++++..... ....+....++..
T Consensus 133 ------~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~ 199 (265)
T cd08564 133 ------GLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS-------PSPLDFLEQAKYY 199 (265)
T ss_pred ------hHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC-------cccccHHHHHHhc
Confidence 56789999999999999999999999 999999999998 999999854321 0122334556677
Q ss_pred CCceEecccccccCChHHHHHHHHhCCeEEEecc----cCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 275 GLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGE----LNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 275 ~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgt----vn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
++.++++++.. .++++++.+|++|+.|++| | +|+.++|.+++ ++||||||||+|+.+.+++
T Consensus 200 ~~~~v~~~~~~--~~~~~v~~~~~~Gl~v~~w-T~~~~~n~~~~~~~l~-~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 200 NATWVNFSYDF--WTEEFVKKAHENGLKVMTY-FDEPVNDNEEDYKVYL-ELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred CCceeeechhh--hhHHHHHHHHHcCCEEEEe-cCCCCCCCHHHHHHHH-HcCCCEEEcCCHHHHHHhh
Confidence 88888877654 5899999999999999999 8 78889998886 7999999999999998876
No 11
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-49 Score=375.82 Aligned_cols=272 Identities=42% Similarity=0.678 Sum_probs=210.0
Q ss_pred eEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCc-------cccc
Q 017440 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGE-------IIEK 124 (371)
Q Consensus 52 ~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~-------~~~~ 124 (371)
+||||||++++.... .++.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|+++++ ..++
T Consensus 1 ~viaHRG~~~~~~~~---~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~~~~~~g~~~ 77 (293)
T cd08572 1 LVIGHRGLGKNYASG---SLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTGSDEGELIEV 77 (293)
T ss_pred CceEecCCCCCcCcc---cccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccccccCcceee
Confidence 489999997321000 001799999999999999999999999999999999999999999998753 1347
Q ss_pred cccccCHHHHhccCCCCCCCCcCC---cc-ccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCccc---
Q 017440 125 RVTDITLAEFLSYGPQNDPENVGK---PM-LRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLV--- 197 (371)
Q Consensus 125 ~i~~~T~~eL~~l~~~~~~g~~~~---~~-~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~--- 197 (371)
.|.++|++||++++ +|.|+. +. +++..+.....+....+++||||+|+|+.+++++.++||||.+....
T Consensus 78 ~v~~lT~~eL~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~~~~l~IEiK~~~~~~~~~ 153 (293)
T cd08572 78 PIHDLTLEQLKELG----LQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPKDLGFNIEIKYPQLLEDGE 153 (293)
T ss_pred ehhhCcHHHHHhcc----ccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCCccceEEEEecCCcccccc
Confidence 89999999999994 444321 10 01111100001112356899999999999987899999999865321
Q ss_pred ---chhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCc--ccCCCCcccHHHHHHHHH
Q 017440 198 ---YTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ--TCTDVRRSSLDEAIKVCL 272 (371)
Q Consensus 198 ---~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~ 272 (371)
......+.+++.++++++++++.++++++||+++.|+.+++..|++|+++++..... .+.+.+...+...+++++
T Consensus 154 ~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (293)
T cd08572 154 GELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTNEVEHMDPRRRSLQAAVNFAL 233 (293)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCccCCEEEEecCCCCcccccchhhhhHHHHHHHHH
Confidence 011123468899999999999999999999999999999999999999999864432 112222234566678888
Q ss_pred hCCCceEecccccccCChHHHHHHHHhCCeEEEeccc--CChHHHHHHHHhcCceEEEeCCh
Q 017440 273 AGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL--NNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtv--n~~~~~~~l~~~~GVdgIiTD~p 332 (371)
..++.++++.+.....++++++.+|++|+.|++| |+ |++++|.++. ++||||||||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~w-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 293 (293)
T cd08572 234 AEGLLGVVLHAEDLLKNPSLISLVKALGLVLFTY-GDDNNDPENVKKQK-ELGVDGVIYDRV 293 (293)
T ss_pred HCCCeEEEechHHhhcCcHHHHHHHHcCcEEEEE-CCCCCCHHHHHHHH-HcCCCEEEecCC
Confidence 8999998887766556899999999999999999 99 9999999885 799999999986
No 12
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=1.5e-49 Score=364.28 Aligned_cols=227 Identities=24% Similarity=0.337 Sum_probs=194.9
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|+++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~---~~i~~lt~~ 66 (229)
T cd08562 1 IIAHRGASS-----------LAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS---GAVTELTWA 66 (229)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC---ceeecCcHH
Confidence 689999998 899999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
||++++ .+.|+.+ .+.+++||||+|+|++++ .++.++||+|.+... ...+++.++
T Consensus 67 el~~l~----~~~~~~~--------------~~~~~~iptl~evl~~~~~~~~~l~iEiK~~~~~------~~~~~~~v~ 122 (229)
T cd08562 67 ELAQLD----AGSWFSP--------------EFAGEPIPTLADVLELARELGLGLNLEIKPDPGD------EALTARVVA 122 (229)
T ss_pred HHhhcC----CCcccCC--------------CCCCCCCCCHHHHHHHHHhcCCEEEEEECCCCCc------cHHHHHHHH
Confidence 999985 3433222 134689999999999997 478999999986532 125677889
Q ss_pred HHHHHhcCC-CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCCh
Q 017440 212 KVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (371)
Q Consensus 212 ~~l~~~~~~-~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (371)
+++++++.. ++++++||+++.+..+++..|+++++++..... ......+...++.++++++.. +++
T Consensus 123 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~~~ 189 (229)
T cd08562 123 AALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLP-----------ADWLELLAALGAVSIHLNYRG--LTE 189 (229)
T ss_pred HHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC-----------cCHHHHHHHcCCeEEecChhh--CCH
Confidence 999999985 899999999999999999999999999875321 112344566788888776654 589
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
++++.+|++|++|++| |+|+.+++.+++ ++|||||+||+|
T Consensus 190 ~~v~~~~~~g~~v~~w-Tvn~~~~~~~~~-~~gVdgiiTD~p 229 (229)
T cd08562 190 EQVKALKDAGYKLLVY-TVNDPARAAELL-EWGVDAIFTDRP 229 (229)
T ss_pred HHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HCCCCEEEcCCC
Confidence 9999999999999999 999999999986 799999999998
No 13
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.4e-49 Score=363.93 Aligned_cols=233 Identities=21% Similarity=0.200 Sum_probs=191.0
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|. +.|+++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~---g~v~~~t~~ 66 (235)
T cd08565 1 IAGHRGGRN-----------LWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT---GAVRDLTLA 66 (235)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC---CceeeccHH
Confidence 689999998 899999999999999999999999999999999999999999999997 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
||++++ +|.| .+++||||+|+|+.++ +++.++||+|.+..... ...+++.++
T Consensus 67 el~~l~----~~~~-------------------~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~----~~~~~~~v~ 119 (235)
T cd08565 67 ERKALR----LRDS-------------------FGEKIPTLEEVLALFAPSGLELHVEIKTDADGTP----YPGAAALAA 119 (235)
T ss_pred HHhcCC----CCCC-------------------CCCCCCCHHHHHHHhhccCcEEEEEECCCCCCCc----cHHHHHHHH
Confidence 999994 3322 2578999999999997 57899999997641111 125678899
Q ss_pred HHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChH
Q 017440 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPG 291 (371)
Q Consensus 212 ~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 291 (371)
++++++++.++++|+||+++.|+.+++. |+++++++......... .... ....+...++.++.+++.....+++
T Consensus 120 ~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (235)
T cd08565 120 ATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLERL----GGEL-PFLTATALKAHIVAVEQSLLAATWE 193 (235)
T ss_pred HHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCcEEEEecccccccc----cccc-chhhhhhccCcEEccCcccccCCHH
Confidence 9999999999999999999999999999 99999998753211000 0000 0122344566666666554346899
Q ss_pred HHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 292 AIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 292 ~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
+++.+| +|++|++| |||++++|.+++ ++||||||||+|+.+
T Consensus 194 ~v~~~~-~g~~v~~W-TVn~~~~~~~l~-~~GVdgIiTD~P~~~ 234 (235)
T cd08565 194 LVRAAV-PGLRLGVW-TVNDDSLIRYWL-ACGVRQLTTDRPDLA 234 (235)
T ss_pred HHHHHh-CCCEEEEE-ccCCHHHHHHHH-HcCCCEEEeCCcccc
Confidence 999987 49999999 999999999996 799999999999864
No 14
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.3e-49 Score=362.69 Aligned_cols=226 Identities=21% Similarity=0.221 Sum_probs=182.6
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+|+|+|++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (229)
T cd08581 1 LVAHRGYPA-----------RYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE---GLLHELEDA 66 (229)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC---ceeccCCHH
Confidence 689999998 899999999999999999999999999999999999999999999997 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC--CceEEEEeccCCcccchhHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ--SVGFNVELKFDDQLVYTEEELTHALEAI 210 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~--~~~l~iEiK~~~~~~~~~~~~~~~~~~v 210 (371)
||++++. +.|.|+.+ .+.+++||||+|+|+.++. ++.++||+|.+.... ..+...+.++
T Consensus 67 el~~l~~--~~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~---~~~~~~v~~~ 127 (229)
T cd08581 67 ELDSLRV--AEPARFGS--------------RFAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR---FGLERVVDKV 127 (229)
T ss_pred HHhhccc--ccCccccc--------------ccCCccCCCHHHHHHHHhhCCCceEEEEecCCcccc---cchhHHHHHH
Confidence 9999954 23444322 1357899999999999974 789999999864211 1111233444
Q ss_pred HHHHHHhc-CCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC
Q 017440 211 LKVVFEHA-QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (371)
Q Consensus 211 l~~l~~~~-~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (371)
++.+. +.++++++||+++.|+.+++. |.++++++..... ......+...++.++++++.. .
T Consensus 128 ---~~~~~~~~~~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~ 189 (229)
T cd08581 128 ---LRALPAVAAQRVLISFDYDLLALAKQQ-GGPRTGWVLPDWD-----------DASLAEADELQPDYLFCDKNL---L 189 (229)
T ss_pred ---HHHHHhccCCeEEEeCCHHHHHHHHhc-CCCCeEEEeccCC-----------hHHHHHHHhhCCCEEeccccc---C
Confidence 44443 567999999999999999999 9999998874211 111234556788888876652 2
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
..++.+|++|++|++| |||++++|.+++ ++||||||||+|
T Consensus 190 -~~v~~~~~~G~~v~vW-TVn~~~~~~~l~-~~GVdgiiTD~P 229 (229)
T cd08581 190 -PDTGDLWAGTWKWVIY-EVNEPAEALALA-ARGVALIETDNI 229 (229)
T ss_pred -hhhHHHHhCCceEEEE-EcCCHHHHHHHH-HhCCcEEEcCCC
Confidence 4588899999999999 999999999996 799999999998
No 15
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=4.6e-49 Score=373.58 Aligned_cols=270 Identities=31% Similarity=0.475 Sum_probs=205.4
Q ss_pred eEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcc-------ccc
Q 017440 52 VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI-------IEK 124 (371)
Q Consensus 52 ~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~-------~~~ 124 (371)
+.|||||++++..+.+ +.+||||++||+.|+++|+|+||+|||+||||++||+||.+++|++++.. .++
T Consensus 1 ~~iaHRG~~~~~~~~~----~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~~~~~~~~~~ 76 (290)
T cd08607 1 LDVGHRGAGNSYTAAS----AVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGDSDRDDLLEV 76 (290)
T ss_pred CceecCCCCcCccccc----CCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccccCccceEEE
Confidence 3689999963211100 27999999999999999999999999999999999999999999988741 134
Q ss_pred cccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccch-----
Q 017440 125 RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYT----- 199 (371)
Q Consensus 125 ~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~----- 199 (371)
.|.++|++||++++... .+.|+.+.++.... ......+++||||+|+|+.++.++.++||||.+......
T Consensus 77 ~v~~lt~~eL~~l~~~~-~~~~~~~~~~~~~~----~~~~~~~~~iPtL~evl~~~~~~~~lnIEiK~~~~~~~~~~~~~ 151 (290)
T cd08607 77 PVKDLTYEQLKLLKLFH-ISALKVKEYKSVEE----DEDPPEHQPFPTLSDVLESVPEDVGFNIEIKWPQQQKDGSWESE 151 (290)
T ss_pred ecccCCHHHHhhcCccc-cccccccccccccc----ccccccccCCCCHHHHHHhCCCccceEEEEecCccccccccccc
Confidence 89999999999995311 11222222211000 001123678999999999998889999999976421100
Q ss_pred ---hHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCc---ccCCCCcccHHHHHHHHHh
Q 017440 200 ---EEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ---TCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 200 ---~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 273 (371)
....+.+++.+++.+.+++..++++|+||++++|..++++.|++|+++++..... .+.+.+..++..++.++..
T Consensus 152 ~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (290)
T cd08607 152 LFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQRYPEFMDLRTRTFEIAVNFAQA 231 (290)
T ss_pred cccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCCccccccchHHHhHHHHHHHHHH
Confidence 1123457889999999998888999999999999999999999999999864321 1122222334456677778
Q ss_pred CCCceEecccccccCChHHHHHHHHhCCeEEEeccc--CChHHHHHHHHhcCceEEEeCCh
Q 017440 274 GGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL--NNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 274 ~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtv--n~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.++.+++++....+.++++++.+|++|+.|++| |+ |++++|.+++ ++||||||||++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~w-Tv~~n~~~~~~~l~-~~GVdgIiTD~~ 290 (290)
T cd08607 232 EELLGVNLHSEDLLKDPSQIELAKSLGLVVFCW-GDDLNDPENRKKLK-ELGVDGLIYDRI 290 (290)
T ss_pred cCCceeEechhhhhcChHHHHHHHHcCCEEEEE-CCCCCCHHHHHHHH-HcCCCEEEecCC
Confidence 888888777666567999999999999999999 99 9999999986 799999999985
No 16
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=5.8e-49 Score=365.09 Aligned_cols=243 Identities=16% Similarity=0.181 Sum_probs=190.6
Q ss_pred CceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc-----cc
Q 017440 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-----EK 124 (371)
Q Consensus 50 ~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~-----~~ 124 (371)
++.||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+... .+
T Consensus 1 ~~~iiAHRG~~~-----------~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g~~~~~~~~ 69 (252)
T cd08574 1 KPALIGHRGAPM-----------LAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADVFPERAHE 69 (252)
T ss_pred CCeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCccccccccc
Confidence 368999999998 89999999999999999999999999999999999999999999998610 01
Q ss_pred cccccCHHHHhccCCCCCCCCcCCcccccc--CCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcc-cchh
Q 017440 125 RVTDITLAEFLSYGPQNDPENVGKPMLRKT--KDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQL-VYTE 200 (371)
Q Consensus 125 ~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~-~~~~ 200 (371)
.|.++|++||+++ ++|+||.+..+.. ............+++||||+|+|+.++ .++.++||||.+... ++.
T Consensus 70 ~v~~~T~~eL~~l----d~g~~f~~~~~~~~~~~~~~~~~~~~~~~~IPtL~evl~~~~~~~~~l~iEiK~~~~~~~~~- 144 (252)
T cd08574 70 RASMFTWTDLQQL----NAGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAELLRLAKKHNKSVIFDLRRPPPNHPYY- 144 (252)
T ss_pred chhcCCHHHHhhC----CCCCcccCCCccchhcccccchhhhcCCCCCCCHHHHHHHHHHcCCeEEEEecCCcccCccH-
Confidence 6899999999999 6787764321100 000000001246789999999999997 478999999975421 111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEe
Q 017440 201 EELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIV 280 (371)
Q Consensus 201 ~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 280 (371)
..++++++++++++++..+++++||+.. ++.++++.|+++++++... .. ......++.+++
T Consensus 145 ---~~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~-----------~~----~~~~~~~~~~~~ 205 (252)
T cd08574 145 ---QSYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGFQQVSGRKL-----------PV----ESLRENGISRLN 205 (252)
T ss_pred ---HHHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCCeEeecccc-----------ch----HHHHhcCCeEEc
Confidence 2577899999999998777777666654 7999999999998864321 11 122456788888
Q ss_pred cccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 281 SEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 281 ~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+.. +++++++.+|++|+.|++| |||++++|.+++ ++||||||||-
T Consensus 206 ~~~~~--~~~~~v~~~~~~g~~v~~W-TVn~~~~~~~l~-~~GVdgIiTD~ 252 (252)
T cd08574 206 LEYSQ--LSAQEIREYSKANISVNLY-VVNEPWLYSLLW-CSGVQSVTTNA 252 (252)
T ss_pred cCccc--CCHHHHHHHHHCCCEEEEE-ccCCHHHHHHHH-HcCCCEEecCc
Confidence 77654 5899999999999999999 999999999996 79999999993
No 17
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=1.4e-48 Score=358.36 Aligned_cols=229 Identities=22% Similarity=0.347 Sum_probs=197.2
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T 130 (371)
+.||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++. +.|+++|
T Consensus 1 ~~iiaHRG~~~-----------~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t 66 (230)
T cd08563 1 TLIFAHRGYSG-----------TAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK---GYVKDLT 66 (230)
T ss_pred CeEEEccCCCC-----------CCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC---CchhhCC
Confidence 46999999998 899999999999999999999999999999999999999999999987 9999999
Q ss_pred HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccchhHHHHHHHHH
Q 017440 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEA 209 (371)
Q Consensus 131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~~ 209 (371)
|+||++++. +.++.+ ...++++|||+|+|+.++ +++.++||+|.+... + ..+++.
T Consensus 67 ~~el~~l~~----~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~l~leiK~~~~~-~-----~~~~~~ 122 (230)
T cd08563 67 LEELKKLDA----GSWFDE--------------KFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDVIH-Y-----PGIEKK 122 (230)
T ss_pred HHHHHhcCC----CCccCc--------------cCCCCcCCCHHHHHHHHHhcCcEEEEEECCCCCc-C-----hhHHHH
Confidence 999999854 322211 124678999999999998 689999999986432 1 146788
Q ss_pred HHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC
Q 017440 210 ILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (371)
Q Consensus 210 vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (371)
+++.++++++.++++++||+++.+..+++..|++++++++.... ....+++...++.++++++.. ++
T Consensus 123 l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----------~~~~~~~~~~~~~~v~~~~~~--~~ 189 (230)
T cd08563 123 VLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIKLALLYETGL-----------QDPKDYAKKIGADSLHPDFKL--LT 189 (230)
T ss_pred HHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcc-----------cCHHHHHHHhCCEEEccCchh--cC
Confidence 99999999999999999999999999999999999999875421 123456667778888876653 58
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
+++++.+|++|+.|++| |+|+++++.+++ ++|||||+||+|
T Consensus 190 ~~~i~~~~~~g~~v~~W-tvn~~~~~~~~~-~~GVdgi~TD~P 230 (230)
T cd08563 190 EEVVEELKKRGIPVRLW-TVNEEEDMKRLK-DLGVDGIITNYP 230 (230)
T ss_pred HHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEeCCCC
Confidence 99999999999999999 999999999996 799999999998
No 18
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=3.5e-49 Score=374.83 Aligned_cols=255 Identities=22% Similarity=0.229 Sum_probs=195.4
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc--------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~-------- 122 (371)
|.||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+|+|+||+..+
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~~~~~ 69 (296)
T cd08559 1 PLVIAHRGASG-----------YAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFRGRKD 69 (296)
T ss_pred CeEEEeCCcCC-----------CCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCccccccccccCC
Confidence 67999999998 89999999999999999999999999999999999999999999988511
Q ss_pred -cccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-------CceEEEEeccCC
Q 017440 123 -EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVELKFDD 194 (371)
Q Consensus 123 -~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~iEiK~~~ 194 (371)
++.|.++|++||+++ +.|.|+.+.|.... .....+++||||+|+|+.++. ++.++||||.+.
T Consensus 70 ~~~~v~~~t~~eL~~l----~~~~~~~~~~~~~~------~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~ 139 (296)
T cd08559 70 TGYFVIDFTLAELKTL----RAGSWFNQRYPERA------PSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPT 139 (296)
T ss_pred CCeeeecCcHHHHhcC----CCCCcccccccccC------ccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChh
Confidence 168999999999999 46666544332100 011357899999999999975 689999999753
Q ss_pred cccchhHHHHHHHHHHHHHHHHhcCC---CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccC----CCCcccHHHH
Q 017440 195 QLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCT----DVRRSSLDEA 267 (371)
Q Consensus 195 ~~~~~~~~~~~~~~~vl~~l~~~~~~---~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~----~~~~~~~~~~ 267 (371)
..... ...+++.++++++++++. ++++|+||+++.|+.+++..|++++++++........ +.........
T Consensus 140 ~~~~~---~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 216 (296)
T cd08559 140 FHKQE---GPDIEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAG 216 (296)
T ss_pred hhhhc---CCCHHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHH
Confidence 21000 014678899999999887 8999999999999999999999999999864321100 0000001112
Q ss_pred HHHHHhCCCceEecccccc--------cCChHHHHHHHHhCCeEEEecccCC---------hHHHHHHHHhc-CceEEEe
Q 017440 268 IKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEAKLCLVSYGELNN---------VPEVVYMQRFM-GIEGVIV 329 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~--------~~~~~~v~~~~~~Gl~v~~wgtvn~---------~~~~~~l~~~~-GVdgIiT 329 (371)
++.++. ++.++++.+..+ ..++++++.+|++|+.|++| |||+ .++|.+++ ++ |||||||
T Consensus 217 ~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~W-Tvn~~~~~~~~~~~~~~~~l~-~~~GVdgIiT 293 (296)
T cd08559 217 LKEIAK-YADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPY-TFRNENLFLAPDFKQDMDALY-NAAGVDGVFT 293 (296)
T ss_pred HHHHHH-HhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEE-EecCcccccccccccCHHHHH-HHhCCCEEEc
Confidence 222222 455666555432 12389999999999999999 9999 89999986 68 9999999
Q ss_pred CCh
Q 017440 330 DLV 332 (371)
Q Consensus 330 D~p 332 (371)
|+|
T Consensus 294 D~P 296 (296)
T cd08559 294 DFP 296 (296)
T ss_pred CCC
Confidence 998
No 19
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-48 Score=358.28 Aligned_cols=230 Identities=26% Similarity=0.347 Sum_probs=194.2
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||++|++.|+|+||+||++||||++||+||.+++|+|++. +.|+++|++
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (233)
T cd08582 1 VIAHRGASA-----------EAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD---GAVSDLTLA 66 (233)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC---cchhhCCHH
Confidence 689999998 799999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-CceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
||++++ .+.++.. .+.+++||||+|+|+.++. ++.++||+|.+.. . ..+++.++
T Consensus 67 el~~l~----~~~~~~~--------------~~~~~~iptL~evl~~~~~~~~~l~ieiK~~~~---~----~~~~~~~~ 121 (233)
T cd08582 67 ELRKLD----IGSWKGE--------------SYKGEKVPTLEEYLAIVPKYGKKLFIEIKHPRR---G----PEAEEELL 121 (233)
T ss_pred HHhcCC----CCcccCC--------------CCCCCcCCCHHHHHHHHHhcCceEEEEeCCCcc---C----ccHHHHHH
Confidence 999985 3333221 1357899999999999985 7999999998511 1 15678899
Q ss_pred HHHHHh-cCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCCh
Q 017440 212 KVVFEH-AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (371)
Q Consensus 212 ~~l~~~-~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (371)
++++++ .+.++++++||++..+..+++..|+++++++....... ......++..++.++++++.. ..++
T Consensus 122 ~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~---------~~~~~~~~~~~~~~i~~~~~~-~~~~ 191 (233)
T cd08582 122 KLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKSPK---------EDPRPLAKSGGAAGLDLSYEK-KLNP 191 (233)
T ss_pred HHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccc---------cchhHHHHhhCceEEcccccc-cCCH
Confidence 999999 46789999999999999999999999999987543210 001123455677888876553 2589
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
++++.+|++|++|++| |+|+.++|.+++ ++|||||+||+|+
T Consensus 192 ~~v~~~~~~G~~v~~w-Tvn~~~~~~~l~-~~GVdgi~TD~p~ 232 (233)
T cd08582 192 AFIKALRDAGLKLNVW-TVDDAEDAKRLI-ELGVDSITTNRPG 232 (233)
T ss_pred HHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HCCCCEEEcCCCC
Confidence 9999999999999999 999999999997 7999999999996
No 20
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=3.7e-48 Score=371.67 Aligned_cols=250 Identities=16% Similarity=0.209 Sum_probs=197.4
Q ss_pred CceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccc---
Q 017440 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRV--- 126 (371)
Q Consensus 50 ~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i--- 126 (371)
+|.||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+++|+|||. +.|
T Consensus 1 ~p~IIAHRGas~-----------~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~---g~v~~~ 66 (351)
T cd08608 1 KPAIIGHRGAPM-----------LAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVD---RVFPER 66 (351)
T ss_pred CCeEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCC---Cccccc
Confidence 368999999998 899999999999999999999999999999999999999999999997 665
Q ss_pred -----cccCHHHHhccCCCCCCCCcCCcccc--ccCCCccccccccCCCCccCHHHHHHhcCC-CceEEEEeccCCc-cc
Q 017440 127 -----TDITLAEFLSYGPQNDPENVGKPMLR--KTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQ-LV 197 (371)
Q Consensus 127 -----~~~T~~eL~~l~~~~~~g~~~~~~~~--~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~-~~ 197 (371)
+++||+||+++ ++|.|+.+.-+ +.+....-......+++||||+|+|+.+++ +..++||||.+.. .+
T Consensus 67 ~~~~~~~~TlaEL~~L----daG~wf~~~~p~~~~~~~~~~~~~~~~ge~IPTL~EvL~~~~~~~~~l~iEIK~~~~~~~ 142 (351)
T cd08608 67 QYEDASMFNWTDLERL----NAGQWFLKDDPFWTAQSLSPSDRKEAGNQSVCSLAELLELAKRYNASVLLNLRRPPPNHP 142 (351)
T ss_pred cccccccCCHHHHhhC----CCCcccccCCccccccccccccccccCCCCCCCHHHHHHHHHhcCCeEEEEECCCcccCc
Confidence 67999999999 67887743110 000000000112467899999999999974 6889999997532 22
Q ss_pred chhHHHHHHHHHHHHHHHHhcCC-CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCC
Q 017440 198 YTEEELTHALEAILKVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGL 276 (371)
Q Consensus 198 ~~~~~~~~~~~~vl~~l~~~~~~-~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (371)
+. ..+++.+++.+.++++. ++++++||+. ++.+++..|+++++.... .....++..++
T Consensus 143 ~~----~~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P~~~~~~~~~---------------~~~~~~~~~~~ 201 (351)
T cd08608 143 YH----QSWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAPGFQQTSGEK---------------LPVASLRERGI 201 (351)
T ss_pred ch----hHHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCCCCeeecccc---------------chHHHHHHcCC
Confidence 21 14567788888888865 5788888876 478999999988642110 11233456788
Q ss_pred ceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhh
Q 017440 277 QGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDF 342 (371)
Q Consensus 277 ~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~ 342 (371)
.++++++.. +++++++.+|++|++|++| |||++++|.++. ++||||||||+|+.+.++...+
T Consensus 202 ~~l~~~~~~--lt~~~v~~~~~~Gl~V~vW-TVN~~~~~~~l~-~~GVdgIiTD~P~~l~~l~~~~ 263 (351)
T cd08608 202 TRLNLRYTQ--ASAQEIRDYSASNLSVNLY-TVNEPWLYSLLW-CSGVPSVTSDASHVLRKVPFPL 263 (351)
T ss_pred eEEccchhh--cCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEEECCHHHHHHhhhhh
Confidence 888887764 5999999999999999999 999999999886 8999999999999999876654
No 21
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=7.5e-49 Score=366.86 Aligned_cols=248 Identities=20% Similarity=0.233 Sum_probs=189.5
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T 130 (371)
|.+|||||+++ .+||||++||+.|+++|+|+||+|||+||||++||+||.+++|+|+|. +.|+++|
T Consensus 1 p~iiaHRG~~~-----------~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~---~~v~~~t 66 (264)
T cd08575 1 PLHIAHRGGAA-----------EFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS---GLVSDLT 66 (264)
T ss_pred CeEEEeCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc---eEEecCC
Confidence 57999999998 899999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHH
Q 017440 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (371)
Q Consensus 131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v 210 (371)
++||++++ +|.++.+. +|.........+++||||+|+|+.+++ +.++||+|.+.. ..+++++
T Consensus 67 ~~el~~l~----~~~~~~~~-----~~~~~~~~~~~~~~iptL~evl~~~~~-~~l~iEiK~~~~--------~~~~~~v 128 (264)
T cd08575 67 YAELPPLD----AGYGYTFD-----GGKTGYPRGGGDGRIPTLEEVFKAFPD-TPINIDIKSPDA--------EELIAAV 128 (264)
T ss_pred HHHHHhcc----cCCccccC-----CCCcccccCCCCCcCCcHHHHHHhCCC-CeEEEEECCCCH--------HHHHHHH
Confidence 99999994 45443211 011111122467899999999999975 899999997642 2578899
Q ss_pred HHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCccc------CCCCcccHH-HHHHHH--------HhCC
Q 017440 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTC------TDVRRSSLD-EAIKVC--------LAGG 275 (371)
Q Consensus 211 l~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~------~~~~~~~~~-~~~~~~--------~~~~ 275 (371)
+++++++++.++++++||+++.|+++++..|+++++++.......+ ......... ...... ...+
T Consensus 129 ~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (264)
T cd08575 129 LDLLEKYKREDRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFEIPRPVIVLETFTLG 208 (264)
T ss_pred HHHHHhccccceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEEeecccEEEEEeccc
Confidence 9999999999999999999999999999999987765442110000 000000000 000000 0112
Q ss_pred CceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 276 LQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 276 ~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
+.++.+++. +.++++++.+|++|++|++| |||++++|.+++ ++||||||||+|+.
T Consensus 209 ~~~~~~~~~--~~~~~~v~~~~~~G~~v~vW-TVNd~~~~~~l~-~~GVdgIiTD~P~~ 263 (264)
T cd08575 209 EGASIVAAL--LWWPNLFDHLRKRGIQVYLW-VLNDEEDFEEAF-DLGADGVMTDSPTK 263 (264)
T ss_pred cccchhhhh--hcCHHHHHHHHhcCCcEEEE-EECCHHHHHHHH-hcCCCEEEeCCccc
Confidence 223333332 46999999999999999999 999999999986 79999999999985
No 22
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=4e-48 Score=352.94 Aligned_cols=219 Identities=20% Similarity=0.231 Sum_probs=189.4
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t~~ 66 (220)
T cd08579 1 IIAHRGVSS-----------NGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN---KKVWDLTLE 66 (220)
T ss_pred CeeccCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC---CChhhCCHH
Confidence 689999998 899999999999999999999999999999999999999999999997 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-CceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
||++++. +.+ ..+++||||+|+|+.++. ++.++||||.+... . ..+++.++
T Consensus 67 el~~l~~----~~~------------------~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~--~----~~~~~~v~ 118 (220)
T cd08579 67 ELKKLTI----GEN------------------GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHD--S----PDLVEKFV 118 (220)
T ss_pred HHhcCcC----ccC------------------CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCC--C----HHHHHHHH
Confidence 9999853 221 245789999999999986 79999999987531 1 25678899
Q ss_pred HHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChH
Q 017440 212 KVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPG 291 (371)
Q Consensus 212 ~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 291 (371)
+.++++++.++++|+||+++.++.+++..|+++++++..... .. +...++..+.+++.. .+++
T Consensus 119 ~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~--~~~~ 181 (220)
T cd08579 119 KLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNI--------GN-------LPKTNVDFYSIEYST--LNKE 181 (220)
T ss_pred HHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEeccc--------Cc-------ccccCceEEeeehhh--cCHH
Confidence 999999998999999999999999999999999999874321 01 123456666665543 5899
Q ss_pred HHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 292 AIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 292 ~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
+++.+|++|++|++| |+|+++++.+++ ++|||||+||+|
T Consensus 182 ~v~~~~~~G~~v~~w-tvn~~~~~~~~~-~~Gvd~i~TD~P 220 (220)
T cd08579 182 FIRQAHQNGKKVYVW-TVNDPDDMQRYL-AMGVDGIITDYP 220 (220)
T ss_pred HHHHHHHCCCEEEEE-cCCCHHHHHHHH-HcCCCEEeCCCC
Confidence 999999999999999 999999998886 799999999998
No 23
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=6.7e-48 Score=360.56 Aligned_cols=251 Identities=22% Similarity=0.292 Sum_probs=196.3
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccc----cCCcc---cc
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTK----DEGEI---IE 123 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~----t~g~~---~~ 123 (371)
+.||||||+++ .+||||++||++|++.|||+||+|||+||||++||+||.+++|+ ++|+. .+
T Consensus 1 ~~iiaHRG~~~-----------~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~~~~ 69 (263)
T cd08567 1 FDLQGHRGARG-----------LLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLPYEG 69 (263)
T ss_pred CceEeccCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcccccC
Confidence 36999999998 89999999999999999999999999999999999999999964 44431 23
Q ss_pred ccccccCHHHHhccCCCCCCCCcCCccccccCCCccccc-cccCCCCccCHHHHHHhcCC----CceEEEEeccCCcccc
Q 017440 124 KRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEW-KVEKDTPLCTLQEAFEKVDQ----SVGFNVELKFDDQLVY 198 (371)
Q Consensus 124 ~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~-~~~~~~~iptL~evL~~~~~----~~~l~iEiK~~~~~~~ 198 (371)
+.|+++|++||++++ .|.++... +.+..|+. ....+++||||+|+|+.+++ ++.++||+|.+.....
T Consensus 70 ~~v~~~t~~el~~l~----~~~~~~~~----~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~ 141 (263)
T cd08567 70 PALYELTLAEIKQLD----VGEKRPGS----DYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDI 141 (263)
T ss_pred cchhcCCHHHHHhcC----CCccccCc----CcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccc
Confidence 789999999999995 34432100 00111110 11235899999999999985 5899999998653211
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCce
Q 017440 199 TEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQG 278 (371)
Q Consensus 199 ~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (371)
.....+.+++.++++++++++.++++|+||+++.++.+++..|++++++++..... ..+ ...++..++..
T Consensus 142 ~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-------~~~---~~~~~~~~~~~ 211 (263)
T cd08567 142 LHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL-------GNL---PRAAKKLGADI 211 (263)
T ss_pred cCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc-------cCH---HHHHHHhCCcE
Confidence 10112357889999999999999999999999999999999999999998754210 112 23445677777
Q ss_pred EecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 279 IVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 279 v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
+.+.+. .+++++++.+|++|+.|++| |+|+++++.+++ ++|||||+||+|++
T Consensus 212 ~~~~~~--~~~~~~i~~~~~~G~~v~vw-tvn~~~~~~~~~-~~Gvdgi~TD~P~~ 263 (263)
T cd08567 212 WSPYFT--LVTKELVDEAHALGLKVVPW-TVNDPEDMARLI-DLGVDGIITDYPDL 263 (263)
T ss_pred Eecchh--hcCHHHHHHHHHCCCEEEEe-cCCCHHHHHHHH-HcCCCEEEcCCCCC
Confidence 776544 36899999999999999999 999999998886 79999999999963
No 24
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=9.4e-48 Score=358.03 Aligned_cols=235 Identities=20% Similarity=0.295 Sum_probs=191.2
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++. +.|+++||+
T Consensus 1 iiaHRG~~~-----------~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~---g~v~~~t~~ 66 (258)
T cd08573 1 IIGHRGAGH-----------DAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT---GLVAELTWE 66 (258)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC---ceEecCcHH
Confidence 689999998 899999999999999999999999999999999999999999999997 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccchhHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVYTEEELTHALEAIL 211 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl 211 (371)
||++++ +|.++.. ...+.+++||||+|+|+.++ .++.++||+|.+.. .++++++
T Consensus 67 el~~l~----~~~~~~~------------~~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~---------~~~~~v~ 121 (258)
T cd08573 67 ELRKLN----AAAKHRL------------SSRFPGEKIPTLEEAVKECLENNLRMIFDVKSNSS---------KLVDALK 121 (258)
T ss_pred HHhhCC----CCCCCCC------------ccccCCCCCCCHHHHHHHHHhcCCEEEEEeCCCcH---------HHHHHHH
Confidence 999994 4443210 00135789999999999996 47899999997642 4678888
Q ss_pred HHHHHhc-CCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCC----CCcc-cHH----HHHH----------HH
Q 017440 212 KVVFEHA-QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTD----VRRS-SLD----EAIK----------VC 271 (371)
Q Consensus 212 ~~l~~~~-~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~----~~~~-~~~----~~~~----------~~ 271 (371)
+++++++ +.++++++||+++.++.+++..|++++++++........+ .+.. .+. .... ..
T Consensus 122 ~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (258)
T cd08573 122 NLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLP 201 (258)
T ss_pred HHHHHCCCccCCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999998 8899999999999999999999999999987432100000 0000 000 0000 11
Q ss_pred HhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHh-cCceEEEeCC
Q 017440 272 LAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRF-MGIEGVIVDL 331 (371)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~-~GVdgIiTD~ 331 (371)
...+++++++++.. +++++++.+|++|++|++| |||++++|.+++ + +||| ||||+
T Consensus 202 ~~~~~~~v~~~~~~--~~~~~v~~~~~~G~~v~vW-TVn~~~~~~~l~-~~~GVd-iiTD~ 257 (258)
T cd08573 202 YFLGVSALLIHKDD--ISSAYVRYWRARGIRVIAW-TVNTPTEKQYFA-KTLNVP-YITDS 257 (258)
T ss_pred hhcCeeEEEechHh--cCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HHhCCC-eecCC
Confidence 34678888876654 5999999999999999999 999999999996 8 9999 99997
No 25
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1.5e-47 Score=366.04 Aligned_cols=260 Identities=20% Similarity=0.188 Sum_probs=189.1
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcc---------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI--------- 121 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~--------- 121 (371)
|+||||||+++ .+||||++||+.|++.|+|+||||||+||||++||+||.+|+|+||+..
T Consensus 1 ~lviAHRG~s~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (318)
T cd08600 1 KIIIAHRGASG-----------YLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRKD 69 (318)
T ss_pred CeEEEcCCCCC-----------CCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCcccccccccccC
Confidence 57999999998 8999999999999999999999999999999999999999999998531
Q ss_pred ccccccccCHHHHhccCCCCCCCCcCCcc----ccccCCCccccccccCCCCccCHHHHHHhcCC-------CceEEEEe
Q 017440 122 IEKRVTDITLAEFLSYGPQNDPENVGKPM----LRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVEL 190 (371)
Q Consensus 122 ~~~~i~~~T~~eL~~l~~~~~~g~~~~~~----~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~iEi 190 (371)
.++.|.++|++||++| ++|+|+.+. ++... ++... ...+++||||+|+|+.++. ++.++|||
T Consensus 70 g~~~v~dlT~aEL~~l----d~g~~f~~~~~~~~~~~~-~~~~~--~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEi 142 (318)
T cd08600 70 GRYYVIDFTLDELKSL----SVTERFDIENGKKVQVYP-NRFPL--WKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEI 142 (318)
T ss_pred CceeEeeCcHHHHhhC----CCCCCccccccccccccc-ccCcc--cCCCCccCCHHHHHHHHHHhhhhcCCcceEEEee
Confidence 0156999999999999 567665331 00000 00000 1256799999999998853 68899999
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhcCC---CCeEEecCCHHHHHHHHH-HCC----CCCeEEEcCCCCcccC-CC--
Q 017440 191 KFDDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRK-LQS----TYPVFFLTNGGAQTCT-DV-- 259 (371)
Q Consensus 191 K~~~~~~~~~~~~~~~~~~vl~~l~~~~~~---~~v~i~Sf~~~~l~~l~~-~~p----~~~~~~l~~~~~~~~~-~~-- 259 (371)
|.+...... -..+++.++++++++++. .+|+|+||+++.|+.+++ ..| ++++++++........ ..
T Consensus 143 K~~~~~~~~---~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (318)
T cd08600 143 KAPWFHHQE---GKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP 219 (318)
T ss_pred cCchhhhhc---cccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence 975321100 014788899999999984 479999999999999997 899 9999999852110000 00
Q ss_pred ------CcccH--HHHHHHHHhCCCceEecccccc---------cCChHHHHHHHHhCCeEEEecccCChHH------HH
Q 017440 260 ------RRSSL--DEAIKVCLAGGLQGIVSEVRAI---------FKNPGAIKKIKEAKLCLVSYGELNNVPE------VV 316 (371)
Q Consensus 260 ------~~~~~--~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~v~~~~~~Gl~v~~wgtvn~~~~------~~ 316 (371)
.+..+ ...+... ...+.++++++..+ ..++++|+.+|++|+.|++| |+|++.. +.
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~-~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~w-Tvn~~~~~~~~~~~~ 297 (318)
T cd08600 220 GGWVNYDYDWMFTKGGLKEI-AKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPY-TVRKDALPEYAKDAD 297 (318)
T ss_pred CCccccchhhhcCHHHHHHH-HHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEE-eccCCccccccCCHH
Confidence 00000 0011111 22356777766532 23569999999999999999 9999862 33
Q ss_pred HH----HHhcCceEEEeCChH
Q 017440 317 YM----QRFMGIEGVIVDLVS 333 (371)
Q Consensus 317 ~l----~~~~GVdgIiTD~p~ 333 (371)
++ +.++||||||||+|+
T Consensus 298 ~~~~~~l~~~GVDGiiTD~P~ 318 (318)
T cd08600 298 QLLDALLNKAGVDGVFTDFPD 318 (318)
T ss_pred HHHHHHHHhcCCcEEEcCCCC
Confidence 32 247999999999995
No 26
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=4.5e-47 Score=360.19 Aligned_cols=256 Identities=16% Similarity=0.233 Sum_probs=185.3
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc--------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~-------- 122 (371)
|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+...
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (300)
T cd08604 1 PLIISHNGASG-----------DYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSKFSNRATT 69 (300)
T ss_pred CeEEecCCcCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCcccccccccc
Confidence 57999999998 89999999999999999999999999999999999999999999998520
Q ss_pred --------cccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-C-ceEEEEecc
Q 017440 123 --------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-S-VGFNVELKF 192 (371)
Q Consensus 123 --------~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~-~~l~iEiK~ 192 (371)
...+.++|++||++++... .++|+.... ........+++||||+|+|+.++. + ..++||||.
T Consensus 70 ~~~~~~~~~~~v~d~t~~eL~~l~~~~-~~~~~~~~~-------~~~~~~~~~~~iptL~Evl~~~~~~~~~~l~iEiK~ 141 (300)
T cd08604 70 VPEIGSTSGIFTFDLTWSEIQTLKPAI-SNPYSVTGL-------FRNPANKNAGKFLTLSDFLDLAKNKSLSGVLINVEN 141 (300)
T ss_pred cccccccCceeeecCcHHHHhhCccCC-cCcccccCc-------CCCcccCCCCCCCCHHHHHHHHHhcCCceEEEEeec
Confidence 0147899999999995421 122321000 000001235799999999999973 3 589999997
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhcCC----CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHH
Q 017440 193 DDQLVYTEEELTHALEAILKVVFEHAQG----RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAI 268 (371)
Q Consensus 193 ~~~~~~~~~~~~~~~~~vl~~l~~~~~~----~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 268 (371)
+.... .. ....++++++++++++++. ++++|+||+++.|+.+++.. ++++++++..... +. ....+
T Consensus 142 ~~~~~-~~-~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~-~~~~~~l~~~~~~---~~----~~~~~ 211 (300)
T cd08604 142 AAYLA-EK-KGLDVVDAVLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI-SYERVYVVDETIR---DA----SDSSI 211 (300)
T ss_pred cchhh-hc-cCccHHHHHHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc-CCceEEEecCccc---cc----ChhHH
Confidence 54210 00 0014678999999999875 68999999999999999988 8999998753210 10 01111
Q ss_pred HHHHhCCCceEecccccc------cC--ChHHHHHHHHhCCeEEEecccCCh-------------HHHHHHHHhcCceEE
Q 017440 269 KVCLAGGLQGIVSEVRAI------FK--NPGAIKKIKEAKLCLVSYGELNNV-------------PEVVYMQRFMGIEGV 327 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~------~~--~~~~v~~~~~~Gl~v~~wgtvn~~-------------~~~~~l~~~~GVdgI 327 (371)
+.. ...+.+++++...+ ++ ++++++.+|++|++|++| |+|++ .++.+.+.++|||||
T Consensus 212 ~~~-~~~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vw-Tvn~~~~~~~~~~~~~~~~~~~~~~~~~GVdgI 289 (300)
T cd08604 212 EEI-KKFADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVE-VLRNEFVSLAFDFFADPTVEINSYVQGAGVDGF 289 (300)
T ss_pred HHH-HHhccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEE-EecCCccccchhccCCHHHHHHHHHHHcCCCEE
Confidence 111 11244555554321 12 348999999999999999 99986 234443347999999
Q ss_pred EeCChHHHHH
Q 017440 328 IVDLVSEITE 337 (371)
Q Consensus 328 iTD~p~~l~~ 337 (371)
|||+|+++.+
T Consensus 290 iTD~P~~~~~ 299 (300)
T cd08604 290 ITEFPATAAR 299 (300)
T ss_pred EecCchhhhc
Confidence 9999998865
No 27
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.1e-46 Score=349.63 Aligned_cols=244 Identities=24% Similarity=0.326 Sum_probs=192.4
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
||||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.++.|+|++. +.|.++|++
T Consensus 1 iiaHRG~~~-----------~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~i~~~t~~ 66 (249)
T cd08561 1 VIAHRGGAG-----------LAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT---GPVADLTLA 66 (249)
T ss_pred CcccCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC---CchhhCCHH
Confidence 689999998 899999999999999999999999999999999999999999999987 999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILK 212 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~ 212 (371)
||++++.. .++.+ .+|+.++. ...++++|||+|+|+.+++ +.++||+|.+.. .+++++++
T Consensus 67 el~~l~~~----~~~~~-----~~~~~~~~-~~~~~~iptL~evl~~~~~-~~~~ieiK~~~~---------~~~~~~~~ 126 (249)
T cd08561 67 ELRRLDAG----YHFTD-----DGGRTYPY-RGQGIRIPTLEELFEAFPD-VRLNIEIKDDGP---------AAAAALAD 126 (249)
T ss_pred HHhhcCcC----ccccC-----cccccccc-CCCCccCCCHHHHHHhCcC-CcEEEEECCCch---------hHHHHHHH
Confidence 99999543 22211 01111111 1346899999999999974 899999998641 56889999
Q ss_pred HHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHH--HHHHhCCCceEecccc---ccc
Q 017440 213 VVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAI--KVCLAGGLQGIVSEVR---AIF 287 (371)
Q Consensus 213 ~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~---~~~ 287 (371)
++++++..++++++||+.+.+..+++..|+++++++........ ..... ......++.++.+++. ..+
T Consensus 127 ~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (249)
T cd08561 127 LIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFV-------LASRLGLGSLYSPPYDALQIPVRYGGVPL 199 (249)
T ss_pred HHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHH-------HHhhcccccccCCCCcEEEcCcccCCeec
Confidence 99999999999999999999999999999999987653210000 00000 0011123344444332 125
Q ss_pred CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 288 KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
.++++++.+|++|+.|++| |||+.+++.+++ ++|||||+||+|+.+++++
T Consensus 200 ~~~~~v~~~~~~G~~v~vW-TVN~~~~~~~l~-~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 200 VTPRFVRAAHAAGLEVHVW-TVNDPAEMRRLL-DLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred CCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-hcCCCEEEcCCHHHHHhhC
Confidence 6899999999999999999 999999999986 7999999999999988753
No 28
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=2.6e-47 Score=361.92 Aligned_cols=254 Identities=17% Similarity=0.179 Sum_probs=186.8
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc--------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~-------- 122 (371)
|+||||||+++ .+||||++||+.|+++|||+||+|||+||||++||+||.+|+|+||+...
T Consensus 1 p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~~~~~~~~~~ 69 (302)
T cd08571 1 PLVIARGGASG-----------DYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIASVFPKRKKTY 69 (302)
T ss_pred CeEEeCCCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccccccccccee
Confidence 57999999998 89999999999999999999999999999999999999999999986310
Q ss_pred -------cc-cccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC--CceEEEEecc
Q 017440 123 -------EK-RVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ--SVGFNVELKF 192 (371)
Q Consensus 123 -------~~-~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~--~~~l~iEiK~ 192 (371)
.+ .|.++|++||++|+... +.++...++. .....+++||||+|+|+.++. ++.++||||.
T Consensus 70 ~~~~~~~~g~~v~d~T~aeL~~l~~~~--~~~~~~~~~~--------~~~~~~~~IptL~evl~~~~~~~~~~l~iEiK~ 139 (302)
T cd08571 70 VVEGQSTSGIFSFDLTWAEIQTLKPII--SNPFSVLFRN--------PRNDNAGKILTLEDFLTLAKPKSLSGVWINVEN 139 (302)
T ss_pred cccCcccCCeeeeeCCHHHHhhCcccc--cCcccccCCC--------cccCCCCCcCCHHHHHHhhhccCCceEEEEccC
Confidence 12 38999999999995321 2222111110 001245699999999999974 4789999997
Q ss_pred CCccc-chhHHHHHHHHHHHHHHHHhcCC---CCeEEecCCHHHHHHHHHHC--CCCCeEEEcCCCCcccCCCCcccHHH
Q 017440 193 DDQLV-YTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQ--STYPVFFLTNGGAQTCTDVRRSSLDE 266 (371)
Q Consensus 193 ~~~~~-~~~~~~~~~~~~vl~~l~~~~~~---~~v~i~Sf~~~~l~~l~~~~--p~~~~~~l~~~~~~~~~~~~~~~~~~ 266 (371)
+.... ... ..+++.++++++++++. ++++++||+++.|+.++++. |.+++++++..... +.....+.+
T Consensus 140 ~~~~~~~~~---~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~~---~~~~~~l~~ 213 (302)
T cd08571 140 AAFLAEHKG---LLSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTEP---DTLLSNLTE 213 (302)
T ss_pred chhhhhhcc---ccHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCcC---CCChhHHHH
Confidence 53210 000 14678889999999875 79999999999999999999 99999988753211 000011222
Q ss_pred HHHHHHhCCCceEecccccc---------cCChHHHHHHHHhCCeEEEecccCChH-------------HHHHHHHhc-C
Q 017440 267 AIKVCLAGGLQGIVSEVRAI---------FKNPGAIKKIKEAKLCLVSYGELNNVP-------------EVVYMQRFM-G 323 (371)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~---------~~~~~~v~~~~~~Gl~v~~wgtvn~~~-------------~~~~l~~~~-G 323 (371)
... .+.++++++..+ ..++++|+.+|++|++|++| |+|++. ++.+++..+ |
T Consensus 214 ~~~-----~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~w-Tvn~~~~~~~~~~~~~~~~~~~~~~~~~~g 287 (302)
T cd08571 214 IKK-----FASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVS-GFANEFVSLAYDYSADPTLEILSFVGNGNS 287 (302)
T ss_pred HHH-----hcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEE-EEecCcccccccccCCHHHHHHHHHHhcCC
Confidence 111 234444443321 12358999999999999999 999854 466665445 9
Q ss_pred ceEEEeCChHHHHH
Q 017440 324 IEGVIVDLVSEITE 337 (371)
Q Consensus 324 VdgIiTD~p~~l~~ 337 (371)
|||||||+|+.+++
T Consensus 288 VDGiiTD~P~~~~~ 301 (302)
T cd08571 288 VDGVITDFPATAAR 301 (302)
T ss_pred CCEEEecCchhhhc
Confidence 99999999998865
No 29
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.8e-46 Score=362.36 Aligned_cols=271 Identities=19% Similarity=0.210 Sum_probs=195.8
Q ss_pred CCCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcc-----
Q 017440 47 KFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI----- 121 (371)
Q Consensus 47 ~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~----- 121 (371)
...+|.+|||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++..
T Consensus 23 ~~~~pliiAHRGas~-----------~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lVv~HD~~l~rtT~~~~~~~~~ 91 (355)
T PRK11143 23 DSAEKIVIAHRGASG-----------YLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDR 91 (355)
T ss_pred cCCCcEEEECCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEEEeCCchhcccCCcccccccc
Confidence 466789999999998 8999999999999999999999999999999999999999999998421
Q ss_pred ----ccccccccCHHHHhccCCCCCCCCcCCcc----ccccCCCccccccccCCCCccCHHHHHHhcCC-------CceE
Q 017440 122 ----IEKRVTDITLAEFLSYGPQNDPENVGKPM----LRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGF 186 (371)
Q Consensus 122 ----~~~~i~~~T~~eL~~l~~~~~~g~~~~~~----~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-------~~~l 186 (371)
..+.|.++|++||++++ +|.|+... +..... +.. ....+++||||+|+|+.++. ++.+
T Consensus 92 ~~~~g~~~v~dlT~aEL~~ld----~~~~f~~~~g~~~~~~~~-~~~--~~~~~~~IPTL~Evl~~~~~~~~~~~~~~~l 164 (355)
T PRK11143 92 ARKDGRYYAIDFTLDEIKSLK----FTEGFDIENGKKVQVYPG-RFP--MGKSDFRVHTFEEEIEFIQGLNHSTGKNIGI 164 (355)
T ss_pred cccCCceeEeeCcHHHHhhCC----CCCCcccccccccccccc-ccc--ccCCCCccCCHHHHHHHHHHhhhhcCCCcee
Confidence 02679999999999995 45443210 000000 000 01347899999999998863 6789
Q ss_pred EEEeccCCcccchhHHHHHHHHHHHHHHHHhcCC---CCeEEecCCHHHHHHHHH-HCCC----CCeEEEcCCCCcccC-
Q 017440 187 NVELKFDDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRK-LQST----YPVFFLTNGGAQTCT- 257 (371)
Q Consensus 187 ~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~---~~v~i~Sf~~~~l~~l~~-~~p~----~~~~~l~~~~~~~~~- 257 (371)
+||||.+...... ...++++++++++++++. ++|+|+||+++.|+.+++ ..|+ +++++++........
T Consensus 165 ~IEiK~~~~~~~~---~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~ 241 (355)
T PRK11143 165 YPEIKAPWFHHQE---GKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDLKLVQLIAYTDWNETQ 241 (355)
T ss_pred eEeccCccccccc---chhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCcceEEEeccCCCcccc
Confidence 9999985321110 114788899999999973 689999999999999998 6776 588877632110000
Q ss_pred ------C---CCcccH--HHHHHHHHhCCCceEecccccccCC----------hHHHHHHHHhCCeEEEecccCC-----
Q 017440 258 ------D---VRRSSL--DEAIKVCLAGGLQGIVSEVRAIFKN----------PGAIKKIKEAKLCLVSYGELNN----- 311 (371)
Q Consensus 258 ------~---~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~v~~~~~~Gl~v~~wgtvn~----- 311 (371)
. ...... ...+... ...+.++++.+..+ .+ +++++.+|++|+.|++| |||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~i~p~~~~l-~~~~~~~~~~~~~~~v~~ah~~Gl~V~~W-TVn~~~~~~ 318 (355)
T PRK11143 242 EKQPDGKWVNYNYDWMFKPGAMKEV-AKYADGIGPDYHML-VDETSTPGNIKLTGMVKEAHQAKLVVHPY-TVRADQLPE 318 (355)
T ss_pred cccccCcccccchhhhcChhhHHHH-HhhceeecCChhhe-eeccccCCccChHHHHHHHHHcCCEEEEE-Eeccccchh
Confidence 0 000000 0111111 12356777665432 34 38999999999999999 9986
Q ss_pred ----hHHHHHHH-HhcCceEEEeCChHHHHHHHHh
Q 017440 312 ----VPEVVYMQ-RFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 312 ----~~~~~~l~-~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
+.+|.+++ .++||||||||+|+.+.+++.+
T Consensus 319 ~~~d~~~~~~~~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 319 YATDVNQLYDILYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred hhcChHHHHHHHHHccCCCEEEcCChHHHHHHHhc
Confidence 56776652 3799999999999999998864
No 30
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=2.6e-46 Score=344.96 Aligned_cols=225 Identities=22% Similarity=0.276 Sum_probs=185.7
Q ss_pred eEEecCCCCCCccCCchhhhcc-cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440 52 VVMGHRGSGMNMLQSSDQRMKS-IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (371)
Q Consensus 52 ~iiAHRG~~~~~~~~~~~~~~~-~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T 130 (371)
+||||||+++ . +||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+|. +.|.++|
T Consensus 1 ~iiaHRG~~~-----------~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~---~~v~~~t 66 (240)
T cd08566 1 LVVAHRGGWG-----------AGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK---GKVSDLT 66 (240)
T ss_pred CeEecCCCCC-----------CCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC---CchhhCc
Confidence 4899999998 6 99999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHH
Q 017440 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (371)
Q Consensus 131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v 210 (371)
++||++++ .|.|+ . ...+++||||+|+|+.+++.+.++||+|.. ..+.+
T Consensus 67 ~~el~~l~----~~~~~-~--------------~~~~~~iptL~evl~~~~~~~~l~iEiK~~------------~~~~~ 115 (240)
T cd08566 67 LAEIRKLR----LKDGD-G--------------EVTDEKVPTLEEALAWAKGKILLNLDLKDA------------DLDEV 115 (240)
T ss_pred HHHHHhCC----cCCCc-C--------------CCCCCCCCCHHHHHHhhhcCcEEEEEECch------------HHHHH
Confidence 99999994 44432 1 136789999999999998678999999964 24678
Q ss_pred HHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCCh
Q 017440 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNP 290 (371)
Q Consensus 211 l~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 290 (371)
+++++++++.++++|+||+++.++.+++..|+++++++...... ............++.++.+.+... ..+
T Consensus 116 ~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 186 (240)
T cd08566 116 IALVKKHGALDQVIFKSYSEEQAKELRALAPEVMLMPIVRDAED--------LDEEEARAIDALNLLAFEITFDDL-DLP 186 (240)
T ss_pred HHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcc--------hhHHHHhcccccceEEEEEecccc-ccH
Confidence 88899999989999999999999999999999999998753211 010001122234566676655431 367
Q ss_pred HHHHHHHHh-CCeEEEecccCC-------------hHHHHHHHHhcCceEEEeCCh
Q 017440 291 GAIKKIKEA-KLCLVSYGELNN-------------VPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~-------------~~~~~~l~~~~GVdgIiTD~p 332 (371)
..+..++++ |++|++| |+|+ .+++.+++ ++|||||+||+|
T Consensus 187 ~~~~~~~~~~Gl~v~~w-Tvn~~~~~~~~~~~~~~~~~~~~l~-~~Gvd~I~TD~P 240 (240)
T cd08566 187 PLFDELLRALGIRVWVN-TLGDDDTAGLDRALSDPREVWGELV-DAGVDVIQTDRP 240 (240)
T ss_pred HHHHHHHHhCCCEEEEE-CCCcccccchhhhhhCchhHHHHHH-HcCCCEEecCCC
Confidence 788888887 9999999 9994 77888886 799999999998
No 31
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-45 Score=355.44 Aligned_cols=274 Identities=22% Similarity=0.231 Sum_probs=196.6
Q ss_pred CCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCC-CcccccCCccc----
Q 017440 48 FPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN-FIFTKDEGEII---- 122 (371)
Q Consensus 48 ~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~-~L~r~t~g~~~---- 122 (371)
.+.++||||||+++ .+||||++||+.|+++|||+||+||++||||++||+||. +|+|+||+...
T Consensus 14 ~~~~~iIAHRGasg-----------~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a 82 (356)
T cd08560 14 RKTDFSIGHRGAPL-----------QFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELA 82 (356)
T ss_pred CCCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchh
Confidence 36789999999998 899999999999999999999999999999999999997 89999987410
Q ss_pred ------------------cccccccCHHHHhccCCCCCCCCcCCccccccCCCcccccc---ccCCCCccCHHHHHHhcC
Q 017440 123 ------------------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWK---VEKDTPLCTLQEAFEKVD 181 (371)
Q Consensus 123 ------------------~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~---~~~~~~iptL~evL~~~~ 181 (371)
.+.|.++|++||++|+...+.+.++..+.+...++ ...|+ ...+++||||+|+|+.++
T Consensus 83 ~r~~~~~~~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~IPTL~Evl~lv~ 161 (356)
T cd08560 83 AKCTQPFTPANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNG-TPDWRTDLYATCGTLMTHKESIALFK 161 (356)
T ss_pred hhccccccccccccccccCcchhhCcHHHHhcCCCcccccccccccccccccc-ccccccccccCCCCCCCHHHHHHHHH
Confidence 13799999999999965422221111111111100 00011 124679999999999997
Q ss_pred C-CceEEEEeccCCcccc-hh-HHHHHHHHHHHHHHHHhcCC-CCeEEecCCHHHHHHHHHHCCCCCeEEEc--CCCCcc
Q 017440 182 Q-SVGFNVELKFDDQLVY-TE-EELTHALEAILKVVFEHAQG-RPIMFSSFQPDAALLIRKLQSTYPVFFLT--NGGAQT 255 (371)
Q Consensus 182 ~-~~~l~iEiK~~~~~~~-~~-~~~~~~~~~vl~~l~~~~~~-~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~--~~~~~~ 255 (371)
. ++.++||||.+..... .. ...+.++++++++++++++. ++|+|+||+++.|+++++..|++++.++. .... .
T Consensus 162 ~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~-~ 240 (356)
T cd08560 162 SLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDD-T 240 (356)
T ss_pred hcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCc-c
Confidence 4 7999999998653110 00 01225788999999999976 79999999999999999999988664444 3211 1
Q ss_pred cCCCCcccHHHHHHHHHhCCCceEecccccc--------cCChHHHHHHHHhCCeEEEecccCC----------------
Q 017440 256 CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEAKLCLVSYGELNN---------------- 311 (371)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~v~~~~~~Gl~v~~wgtvn~---------------- 311 (371)
+ +.. ..+...++.+...+++++.+++..+ ..+.++++.+|++|++|++| |+++
T Consensus 241 ~-~~~-~~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~W-Tvr~~~~~~~~~~~~~~~~~ 317 (356)
T cd08560 241 A-DFP-ATWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITW-TLERSGPLASGGGWYYQTIE 317 (356)
T ss_pred c-ccc-ccHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEE-EeecCcccccCccccccccc
Confidence 1 111 1233445555567788888775432 24679999999999999999 9952
Q ss_pred -----hHHHHH----HHHhcCceEEEeCChHHHHH
Q 017440 312 -----VPEVVY----MQRFMGIEGVIVDLVSEITE 337 (371)
Q Consensus 312 -----~~~~~~----l~~~~GVdgIiTD~p~~l~~ 337 (371)
..+|.. +++++|||||+||+|+....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~~~~ 352 (356)
T cd08560 318 DVINNDGDMYNVLDVLARDVGILGIFSDWPATVTY 352 (356)
T ss_pred ccccccccHHHHHHHHHHhcCCCEEEccCCCceeE
Confidence 222323 33369999999999987543
No 32
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=6.6e-46 Score=341.38 Aligned_cols=223 Identities=24% Similarity=0.295 Sum_probs=180.2
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
|+||||+++ .+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++. .+.|+++|++
T Consensus 1 iiAHRG~~~-----------~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--~~~v~~~t~~ 67 (234)
T cd08570 1 VIGHRGYKA-----------KYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--GLIIDDSTWD 67 (234)
T ss_pred CEeCCCCCC-----------CCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--CCEeccCCHH
Confidence 689999998 899999999999999999999999999999999999999999999874 2689999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC----CCceEEEEeccCCcccchhHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD----QSVGFNVELKFDDQLVYTEEELTHALE 208 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~~~ 208 (371)
||++++. +. ..+++||||+|+|++++ +++.++||+|..... ..+.+
T Consensus 68 eL~~l~~----~~-------------------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~-------~~~~~ 117 (234)
T cd08570 68 ELSHLRT----IE-------------------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP-------EILFK 117 (234)
T ss_pred HHhhccc----cc-------------------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH-------HHHHH
Confidence 9999853 21 13468999999999985 378999999975321 13556
Q ss_pred HHHHHHHHhc----CCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhC-CCceEeccc
Q 017440 209 AILKVVFEHA----QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG-GLQGIVSEV 283 (371)
Q Consensus 209 ~vl~~l~~~~----~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 283 (371)
.+.+++++++ +.++++++||+++.++.+++..|+++++++.... .....+.... ++.++.+.+
T Consensus 118 ~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~ 185 (234)
T cd08570 118 LIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSL------------DYARHFLNYSEKLVGISMHF 185 (234)
T ss_pred HHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCH------------HHHHHHhccccccceEEeee
Confidence 6777777765 3579999999999999999999999999876321 1111222111 244554443
Q ss_pred ccc--cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 284 RAI--FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 284 ~~~--~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
... .+++++++.+|++|++|++| |||++++|.+++ ++|||||+||+|
T Consensus 186 ~~~~~~~~~~~v~~~~~~gl~v~~w-Tvn~~~~~~~l~-~~gvdgiiTD~P 234 (234)
T cd08570 186 VSLWGPFGQAFLPELKKNGKKVFVW-TVNTEEDMRYAI-RLGVDGVITDDP 234 (234)
T ss_pred ehhhcccCHHHHHHHHHCCCEEEEE-ecCCHHHHHHHH-HCCCCEEEeCCC
Confidence 221 15899999999999999999 999999999996 799999999998
No 33
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=100.00 E-value=1.1e-45 Score=351.74 Aligned_cols=251 Identities=20% Similarity=0.216 Sum_probs=187.1
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccc--------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEII-------- 122 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~-------- 122 (371)
|+||||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+||+...
T Consensus 1 p~iiAHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~ 69 (309)
T cd08602 1 PLVIAHRGASG-----------YRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKT 69 (309)
T ss_pred CeEEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCcccccccccccc
Confidence 57999999998 89999999999999999999999999999999999999999999987411
Q ss_pred ----------cccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-------Cce
Q 017440 123 ----------EKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVG 185 (371)
Q Consensus 123 ----------~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-------~~~ 185 (371)
+..|.++|++||++++ +|.++... +. .....++||||+|+|+.++. ++.
T Consensus 70 ~~~i~~~~~~~~~v~d~t~~eL~~l~----~~~~~~~~------~~----~~~~~~~iptL~Evl~~~~~~~~~~~~~~~ 135 (309)
T cd08602 70 TKTVDGVNVTGWFTEDFTLAELKTLR----ARQRLPYR------DQ----SYDGQFPIPTFEEIIALAKAASAATGRTVG 135 (309)
T ss_pred ccccCCcccCCeeeccCCHHHHhhCc----cCCcCccc------Cc----ccCCCcCcCCHHHHHHHHHhhhhcccccce
Confidence 1239999999999995 44433210 00 00133699999999999963 589
Q ss_pred EEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCC---CCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCC---
Q 017440 186 FNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG---RPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDV--- 259 (371)
Q Consensus 186 l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~---~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~--- 259 (371)
++||||.+..... ..-..++++++++++++++. ++++|+|||++.|+.++++. ++++++++........+.
T Consensus 136 l~iEiK~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~-~~~~~~L~~~~~~~~~~~~~~ 212 (309)
T cd08602 136 IYPEIKHPTYFNA--PLGLPMEDKLLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT-DLPLVQLIDDATIPPQDTPEG 212 (309)
T ss_pred eEEeecCchhccc--ccCCCHHHHHHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh-CCCeEEEecCCCCCccccccc
Confidence 9999997542110 00014678899999999885 49999999999999999998 999999985432100000
Q ss_pred ---Ccc--cHHHHHHHHHhCCCceEecccccc---------cCChHHHHHHHHhCCeEEEecccCCh-------------
Q 017440 260 ---RRS--SLDEAIKVCLAGGLQGIVSEVRAI---------FKNPGAIKKIKEAKLCLVSYGELNNV------------- 312 (371)
Q Consensus 260 ---~~~--~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~v~~~~~~Gl~v~~wgtvn~~------------- 312 (371)
.+. .....++.. ...+.++++++..+ ..++++++.+|++|+.|++| |+|++
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~w-Tvn~~~~~~~~~~~~~~~ 290 (309)
T cd08602 213 DSRTYADLTTDAGLKEI-ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPY-TFRNENTFLPPDFFGDPY 290 (309)
T ss_pred CccchhhhcCHHHHHHH-HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEE-EecCCCcccCcccCCCHH
Confidence 000 001111211 12456777765532 22569999999999999999 99974
Q ss_pred HHHHHHHHhcCceEEEeCCh
Q 017440 313 PEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 313 ~~~~~l~~~~GVdgIiTD~p 332 (371)
++|.+++ ++||||||||+|
T Consensus 291 ~~~~~l~-~~GVdgiiTD~P 309 (309)
T cd08602 291 AEYRAFL-DAGVDGLFTDFP 309 (309)
T ss_pred HHHHHHH-HhCCCEEeCCCC
Confidence 6788886 699999999998
No 34
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=4.5e-45 Score=336.51 Aligned_cols=231 Identities=18% Similarity=0.236 Sum_probs=186.2
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccc-cCCccccccccccCH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTK-DEGEIIEKRVTDITL 131 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~-t~g~~~~~~i~~~T~ 131 (371)
+|||||++.. +.+||||++||++|++.|+|+||+|||+||||++||+||++++|+ +.|...++.+.++|+
T Consensus 1 ~~aHRG~G~~---------~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~~~~~~i~~~t~ 71 (237)
T cd08583 1 LIAHAMGGID---------GKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGLPTSKNTKPLSY 71 (237)
T ss_pred CeeecCCCCC---------CCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCCcccccccCCCH
Confidence 4899998542 278999999999999999999999999999999999999999875 333111278999999
Q ss_pred HHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcC--CCceEEEEeccCCcccchhHHHHHHHHH
Q 017440 132 AEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVD--QSVGFNVELKFDDQLVYTEEELTHALEA 209 (371)
Q Consensus 132 ~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~--~~~~l~iEiK~~~~~~~~~~~~~~~~~~ 209 (371)
+||++++. ..+++||||+|+|++++ +++.++||+|..... ....++..
T Consensus 72 ~el~~~~~-------------------------~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~-----~~~~~~~~ 121 (237)
T cd08583 72 EEFKSKKI-------------------------YGKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDDN-----DIKKLYEY 121 (237)
T ss_pred HHHhhccc-------------------------cCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCcc-----cHHHHHHH
Confidence 99988631 24678999999999996 468999999975431 12246678
Q ss_pred HHHHHHHh--cCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc
Q 017440 210 ILKVVFEH--AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (371)
Q Consensus 210 vl~~l~~~--~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (371)
+++.++++ ++.+|++|+||++..|+.+++..|....+++...... .......+++...++.++++++..
T Consensus 122 l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-- 192 (237)
T cd08583 122 IVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS-------IRLDEIIAFCYENGIKAVTISKNY-- 192 (237)
T ss_pred HHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEeccccc-------cchHHHHHHHHHcCCcEEEechhh--
Confidence 88888885 4778999999999999999999998666555421100 123344566777888888887654
Q ss_pred CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 288 KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
.++++++.+|++|+.|++| |||++.+|.++. ++|||||+||++.
T Consensus 193 ~~~~~v~~~~~~Gl~v~vw-TVn~~~~~~~l~-~~GVdgiiTD~~~ 236 (237)
T cd08583 193 VNDKLIEKLNKAGIYVYVY-TINDLKDAQEYK-KLGVYGIYTDFLT 236 (237)
T ss_pred cCHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEEEeCCCC
Confidence 5899999999999999999 999999999996 7999999999984
No 35
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.8e-44 Score=331.74 Aligned_cols=228 Identities=23% Similarity=0.222 Sum_probs=182.4
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccC
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDIT 130 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T 130 (371)
..+|||||+++.. +.+||||++||+.|++.|+ +||+|||+||||++||+||.+++|+|++. +.|.++|
T Consensus 4 ~~~iaHRG~~~~~--------~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~---~~v~~~t 71 (237)
T cd08585 4 DRPIAHRGLHDRD--------AGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE---GRVEELT 71 (237)
T ss_pred CCceECCCCCCCC--------CCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC---CccccCC
Confidence 3588999997610 1479999999999999999 89999999999999999999999999997 9999999
Q ss_pred HHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHH
Q 017440 131 LAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAI 210 (371)
Q Consensus 131 ~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v 210 (371)
++||++++. | ..+++||||+|+|+.+++++.++||+|.+... . ..+++.+
T Consensus 72 ~~eL~~l~~----~--------------------~~~~~iPtL~evl~~~~~~~~l~iEiK~~~~~-~-----~~l~~~v 121 (237)
T cd08585 72 AAELRALRL----L--------------------GTDEHIPTLDEVLELVAGRVPLLIELKSCGGG-D-----GGLERRV 121 (237)
T ss_pred HHHHhcCCC----C--------------------CCCCCCCCHHHHHHHhccCceEEEEEccCCcc-c-----hHHHHHH
Confidence 999999842 2 14579999999999998788999999976431 1 2567788
Q ss_pred HHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHH----HHHHHHHhCCCceEecccccc
Q 017440 211 LKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLD----EAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 211 l~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~ 286 (371)
++++++++ .+++++||+++.++.+++..|+++++++...... +.....+. ..+......++..+.+++..
T Consensus 122 ~~~l~~~~--~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 195 (237)
T cd08585 122 LAALKDYK--GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EADPAFWNEALLSALFSNLLTRPDFIAYHLDD- 195 (237)
T ss_pred HHHHHhcC--CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---cccccchhHHHHHhhhhhhccCCCEEEeChhh-
Confidence 88888764 5899999999999999999999999999754211 00000011 11111123466777766553
Q ss_pred cCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 287 FKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 287 ~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+++++++.+|++ |+.|++| |||++++|.+++ ++|+++|+-
T Consensus 196 -~~~~~v~~~~~~~G~~v~vW-TVnd~~~~~~l~-~~G~~~i~~ 236 (237)
T cd08585 196 -LPNPFVTLARALLGMPVIVW-TVRTEEDIARLK-QYADNIIFE 236 (237)
T ss_pred -CcCHHHHHHHHhcCCcEEEE-eCCCHHHHHHHH-HhCCeeEeC
Confidence 589999999999 9999999 999999999986 799999873
No 36
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=100.00 E-value=1.7e-43 Score=331.15 Aligned_cols=252 Identities=19% Similarity=0.231 Sum_probs=188.9
Q ss_pred CCCCceEEecCCCCCCc----cCC-------chhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCccc
Q 017440 47 KFPKFVVMGHRGSGMNM----LQS-------SDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFT 115 (371)
Q Consensus 47 ~~~~~~iiAHRG~~~~~----~~~-------~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r 115 (371)
....|.+|||||.+... +.+ -.++.+.+||||++||++|++.|+|+||+|||+||||++||+||++|+|
T Consensus 20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R 99 (309)
T cd08613 20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC 99 (309)
T ss_pred CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence 35678999999997632 100 0223457899999999999999999999999999999999999999999
Q ss_pred ccCCccccccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCc
Q 017440 116 KDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQ 195 (371)
Q Consensus 116 ~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~ 195 (371)
+|+|+ +.|.++|++||+++ +.|+|+.+ +.|+.++++.....+||||+|+|+.++. ..++||||.+..
T Consensus 100 ~T~g~---g~V~dlTlaEL~~L----d~g~~~~~-----~~g~~~p~~~~~~~~IPTL~EvL~~~~~-~~l~IEiK~~~~ 166 (309)
T cd08613 100 RTDGS---GVTRDHTMAELKTL----DIGYGYTA-----DGGKTFPFRGKGVGMMPTLDEVFAAFPD-RRFLINFKSDDA 166 (309)
T ss_pred ccCCC---CchhhCCHHHHhhC----CcCccccc-----ccccccccccCCCCCCcCHHHHHHhcCC-CcEEEEeCCCCc
Confidence 99998 99999999999999 45665432 1222233222223579999999999974 889999998643
Q ss_pred ccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCC--HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 196 LVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQ--PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 196 ~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
...+.+.+.+++++.. ++.+.||+ +..++.++++.|+++++-.. +.....-.+..
T Consensus 167 ---------~~~~~v~~~i~~~~~~-r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~-------------~~~~~~~~~~~ 223 (309)
T cd08613 167 ---------AEGELLAEKLATLPRK-RLQVLTVYGGDKPIAALRELTPDLRTLSKA-------------SMKDCLIEYLA 223 (309)
T ss_pred ---------cHHHHHHHHHHhcCcc-ceEEEEEECCHHHHHHHHHHCCCCceeccc-------------chHHHHHHHHh
Confidence 2346788888898875 67777777 88899999999998775211 11111111122
Q ss_pred CCCceEeccc----------cc---cc-CChHHHHHHHHhCCeEEEec---------ccCChHHHHHHHHhcCceEEEeC
Q 017440 274 GGLQGIVSEV----------RA---IF-KNPGAIKKIKEAKLCLVSYG---------ELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 274 ~~~~~v~~~~----------~~---~~-~~~~~v~~~~~~Gl~v~~wg---------tvn~~~~~~~l~~~~GVdgIiTD 330 (371)
.+..+..+.. +. .. .++++++++|++|.+|++|+ |+|++++|.++. +.|+|||+||
T Consensus 224 ~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~~~~~l~-~~~~~gi~T~ 302 (309)
T cd08613 224 LGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPEDLKRLP-EGFTGYIWTN 302 (309)
T ss_pred hcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHHHHHHHH-hhCCCeEEeC
Confidence 2222222221 11 12 38899999999999999995 699999999997 8999999999
Q ss_pred ChHHH
Q 017440 331 LVSEI 335 (371)
Q Consensus 331 ~p~~l 335 (371)
+++.+
T Consensus 303 r~~~l 307 (309)
T cd08613 303 KIEAL 307 (309)
T ss_pred CHhhc
Confidence 99875
No 37
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=100.00 E-value=2.7e-41 Score=312.38 Aligned_cols=247 Identities=28% Similarity=0.418 Sum_probs=166.8
Q ss_pred cCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHHHHh
Q 017440 56 HRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFL 135 (371)
Q Consensus 56 HRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~ 135 (371)
|||+++ .+||||++||+.|++.|+++||+|||+||||++||+||.++.|++++. +.|.++||+||+
T Consensus 1 HRG~~~-----------~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~---~~i~~~t~~el~ 66 (256)
T PF03009_consen 1 HRGASG-----------NAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD---GPISDLTYAELK 66 (256)
T ss_dssp TTTTTT-----------TSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE---SBGGGS-HHHHT
T ss_pred CCCCCC-----------CChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC---ceeccCCHHHHh
Confidence 999998 899999999999999999999999999999999999999999999987 899999999999
Q ss_pred ccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHh-cCCCceEEEEeccCCcccchhHHHHHHHHHHHHHH
Q 017440 136 SYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEK-VDQSVGFNVELKFDDQLVYTEEELTHALEAILKVV 214 (371)
Q Consensus 136 ~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~-~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l 214 (371)
+++. .+.+....+. .+ .....++||||+|+|+. ...+..+++++|.......... ..+.+.++..+
T Consensus 67 ~l~~---~~~~~~~~~~---~~-----~~~~~~~i~tl~e~l~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~ 133 (256)
T PF03009_consen 67 KLRT---LGSKNSPPFR---GQ-----RIPGKQKIPTLEEVLELCAKVKLNLEIKIKSKDEIKDPEF--LKIVKDIVESV 133 (256)
T ss_dssp TSBE---SSTTTTCGGT---TT-----TSCTCB--EBHHHHHHHHHTTTSEEEEEEEECTTSHHHHH--HHHHHHHHHHH
T ss_pred hCcc---cccCCccccc---cc-----ceecccccCcHHHHHHhhhhccceeEEEEeecccccchhh--ccccccccccc
Confidence 9950 1211111110 00 01123679999999999 4467888888887643211111 02233333333
Q ss_pred HHh------cCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccC
Q 017440 215 FEH------AQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK 288 (371)
Q Consensus 215 ~~~------~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 288 (371)
... ....+++++||+++.+..+++..|.+++++++........+ ........++...+.......+...+.
T Consensus 134 ~~~~~~~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
T PF03009_consen 134 SDILKNSKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPAD---ISLFELYKFVKCPGFLASVWNYADRLG 210 (256)
T ss_dssp HHCHHHHHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH----CCHHHHHHHTTTEEEEEHGGGGHHCE
T ss_pred cccccccccccccccccccCcHHHHHHHHhcCCCceEEEEeccCcccccc---chhhHHHHhhccccccccccccccccc
Confidence 333 35689999999999999999999999999998653211000 000112233322222222222221122
Q ss_pred ChHHHHHHHHhCCeEEEecccCCh--HHHHHHHHhcCceEEEeCChHH
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNV--PEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~--~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
++++++.+|++|+.|++| |+|++ +++.+++ ++||||||||+|++
T Consensus 211 ~~~~v~~~~~~g~~v~~w-tvn~~~~~~~~~l~-~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 211 NPRLVQEAHKAGLKVYVW-TVNDPDVEDMKRLL-DLGVDGIITDFPDT 256 (256)
T ss_dssp BHHHHHHHHHTT-EEEEB-SB-SHSHHHHHHHH-HHT-SEEEES-HHH
T ss_pred cHHHHHHHHHCCCEEEEE-ecCCcHHHHHHHHH-hCCCCEEEEcCCCC
Confidence 567999999999999999 99999 8998886 79999999999974
No 38
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=100.00 E-value=1.7e-40 Score=309.61 Aligned_cols=248 Identities=24% Similarity=0.338 Sum_probs=190.8
Q ss_pred CceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcccccccccc
Q 017440 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDI 129 (371)
Q Consensus 50 ~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~ 129 (371)
.+.+|||||+++ .+||||++||+.|+++|+|+||+|||+||||++||+||++++|++++. +.+.++
T Consensus 5 ~~~iiaHRG~s~-----------~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~---~~~~~~ 70 (257)
T COG0584 5 MPLIIAHRGASG-----------YAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL---GTVRDL 70 (257)
T ss_pred ceEEEeccCcCC-----------CCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc---cccccC
Confidence 579999999998 799999999999999999999999999999999999999999999997 889999
Q ss_pred CHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHH
Q 017440 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEA 209 (371)
Q Consensus 130 T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~ 209 (371)
|++|+++++ .|.++.+ .. ++.+|||+|++..+..++.+++|+|.+....... ..+..
T Consensus 71 ~~~~~~~~~----~~~~~~~--------------~~-~~~ip~l~~~l~~~~~~~~l~ieiK~~~~~~~~~----~~~~~ 127 (257)
T COG0584 71 TLAELKRLD----AGSFRIP--------------TF-GEEIPTLEELLEATGRKIGLYIEIKSPGFHPQEG----KILAA 127 (257)
T ss_pred ChhhhcCcc----cCcccCC--------------CC-CCccCCHHHHHHHhcccCCeEEEecCCCcccchh----hhHHH
Confidence 999999984 3433221 12 7899999999999955899999999976532111 13455
Q ss_pred HHHHHHHhc---CCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440 210 ILKVVFEHA---QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 210 vl~~l~~~~---~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 286 (371)
++..+.+.. ...+++++||+...+..++...|.++++++...... +... .....+.. ......++.+.+...
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-~~~~---~~~~~l~~-~~~~~~~~~~~~~~~ 202 (257)
T COG0584 128 LLALLKRYGGTAADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQ-YDWM---ELPRALKE-VALYADGVGPDWAML 202 (257)
T ss_pred HHHHHHHhcccCCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccch-hhhh---hccchhhH-HHhhhcccCccccee
Confidence 556565553 367999999999999999999999999999876421 0000 01111111 112223333333322
Q ss_pred cC-ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440 287 FK-NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 287 ~~-~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
.. .+..+..+|..|+.|++| |+|+++.+..+ .+.|||+|+||+|+.+.+.+.+
T Consensus 203 ~~~~~~~v~~~~~~gl~v~~~-tv~~~~~~~~~-~~~gvd~i~td~p~~~~~~~~~ 256 (257)
T COG0584 203 AELLTELVDDAHAAGLKVHVW-TVNEEDDIRLL-LEAGVDGLITDFPDLAVAFLNK 256 (257)
T ss_pred cccccHHHHHHHhCCCeEEEE-ecCcHHHHHHH-HHcCCCEEEcCCHHHHHHhhcc
Confidence 11 267999999999999999 99998876565 4799999999999999887653
No 39
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=2e-40 Score=310.01 Aligned_cols=250 Identities=15% Similarity=0.088 Sum_probs=175.2
Q ss_pred ceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCC--CEEEEEEeeecCCeEEEecCCCcccccCCcc-------
Q 017440 51 FVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPL--DFIEFDVQVTRDGCPVIFHDNFIFTKDEGEI------- 121 (371)
Q Consensus 51 ~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Ga--d~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~------- 121 (371)
|+||||||+++ .+||||++||+.|++.|+ ++||||||+||||++||+||.+|+|+||+..
T Consensus 1 plVIAHRGasg-----------~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~~F~~r~~ 69 (299)
T cd08603 1 PLVIARGGFSG-----------LFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIARVYPKRKK 69 (299)
T ss_pred CeEEecCCCCC-----------CCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCccccccccc
Confidence 57999999998 899999999999999998 4799999999999999999999999998631
Q ss_pred --------cc-ccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCC-CccCHHHHHHhcCC-CceEEEEe
Q 017440 122 --------IE-KRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDT-PLCTLQEAFEKVDQ-SVGFNVEL 190 (371)
Q Consensus 122 --------~~-~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~-~iptL~evL~~~~~-~~~l~iEi 190 (371)
.. +.+.++||+||++++.... .+++ -..+.++ +||||+|+|+.++. ++.++||+
T Consensus 70 t~~idG~~~~g~~~~d~TlaELk~L~~~~~--~~~r-------------~~~~~g~~~IpTLeEvl~~~~~~gi~i~ie~ 134 (299)
T cd08603 70 TYSVNGVSTKGWFSVDFTLAELQQVTLIQG--IFSR-------------TPIFDGQYPISTVEDVVTLAKPEGLWLNVQH 134 (299)
T ss_pred cccccccccCCceeccCCHHHHhhCCCCCC--cccC-------------CcccCCcCCCCCHHHHHHHhHhcCeEEEEec
Confidence 11 3599999999999964210 0100 0112344 89999999999974 56677777
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHC--CCCCeEE-EcCCCC-c-----ccCCCCc
Q 017440 191 KFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQ--STYPVFF-LTNGGA-Q-----TCTDVRR 261 (371)
Q Consensus 191 K~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~--p~~~~~~-l~~~~~-~-----~~~~~~~ 261 (371)
|..-.. .+ ..+.+.+++.+++++. ++|+||+...|++++... ++.++.+ +..... . .|.+...
T Consensus 135 ~~~~~~--~g---l~~~~~l~~~L~~~~~---v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~y~~~~~ 206 (299)
T cd08603 135 DAFYQQ--HN---LSMSSYLLSLSKTVKV---DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQTYGSILK 206 (299)
T ss_pred HHHHHH--cC---CCHHHHHHHHHHHcCc---EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCccHHHHHH
Confidence 753211 11 1467888999988754 899999999999999762 4567765 433211 0 1111111
Q ss_pred ccHHHHHHHHHhCCCc--eEeccc-c-cccCChHHHHHHHHhCCeEEEecccCCh------------HHHHHHHHhcC--
Q 017440 262 SSLDEAIKVCLAGGLQ--GIVSEV-R-AIFKNPGAIKKIKEAKLCLVSYGELNNV------------PEVVYMQRFMG-- 323 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~--~v~~~~-~-~~~~~~~~v~~~~~~Gl~v~~wgtvn~~------------~~~~~l~~~~G-- 323 (371)
.+.++.++|...|.. .|.+.. . .+.....+|+++|++|+.|++| |..++ .++..++ ..|
T Consensus 207 -~L~eIa~yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~-tfr~e~~~~~~~~~d~~~e~~~~~-~~g~~ 283 (299)
T cd08603 207 -NLTFIKTFASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYAS-GFANDFDISYNYSYDPVAEYLSFV-GNGNF 283 (299)
T ss_pred -hHHHHHHHHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEE-EeeCCCCccccccCCHHHHHHHHH-hcCCC
Confidence 255666777666542 222211 1 1122347999999999999999 87654 2333333 456
Q ss_pred -ceEEEeCChHHHHH
Q 017440 324 -IEGVIVDLVSEITE 337 (371)
Q Consensus 324 -VdgIiTD~p~~l~~ 337 (371)
||||+||+|..+.+
T Consensus 284 ~vDGvfTDfP~~a~~ 298 (299)
T cd08603 284 SVDGVLSDFPITASE 298 (299)
T ss_pred CCCEEEecCchhhcc
Confidence 99999999998754
No 40
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=100.00 E-value=6.4e-39 Score=284.56 Aligned_cols=189 Identities=25% Similarity=0.385 Sum_probs=165.1
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
+|||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||
T Consensus 1 i~aHRG~~~-----------~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd---------------------- 47 (189)
T cd08556 1 IIAHRGASG-----------EAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD---------------------- 47 (189)
T ss_pred CEeCCCCCC-----------CCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC----------------------
Confidence 689999998 79999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILK 212 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~ 212 (371)
+|||+|+|+.+++++.++||+|.+... +.+++.+++
T Consensus 48 -------------------------------------i~tL~e~l~~~~~~~~i~leiK~~~~~-------~~~~~~l~~ 83 (189)
T cd08556 48 -------------------------------------IPTLEEVLELVKGGVGLNIELKEPTRY-------PGLEAKVAE 83 (189)
T ss_pred -------------------------------------CCCHHHHHHhcccCcEEEEEECCCCCc-------hhHHHHHHH
Confidence 258999999998889999999997531 156889999
Q ss_pred HHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHH
Q 017440 213 VVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGA 292 (371)
Q Consensus 213 ~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 292 (371)
++++++..++++++||+++.+..+++..|+++++++....... ......+...++.++++++.. .++.+
T Consensus 84 ~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~--~~~~~ 152 (189)
T cd08556 84 LLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLD---------PLLAELARALGADAVNPHYKL--LTPEL 152 (189)
T ss_pred HHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCccc---------chhhhHHHhcCCeEEccChhh--CCHHH
Confidence 9999998999999999999999999999999999998653211 000124567788888877654 58999
Q ss_pred HHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 293 IKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 293 v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
++.+|++|+.+++| |+|+.+++.+++ .+|||||+||+
T Consensus 153 i~~~~~~g~~v~~w-tvn~~~~~~~~~-~~GVdgI~TD~ 189 (189)
T cd08556 153 VRAAHAAGLKVYVW-TVNDPEDARRLL-ALGVDGIITDD 189 (189)
T ss_pred HHHHHHcCCEEEEE-cCCCHHHHHHHH-HCCCCEEecCC
Confidence 99999999999999 999999999986 79999999996
No 41
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=100.00 E-value=7.8e-37 Score=287.56 Aligned_cols=242 Identities=23% Similarity=0.335 Sum_probs=197.8
Q ss_pred hHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCCccccccCCC
Q 017440 78 TILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDG 157 (371)
Q Consensus 78 Tl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g 157 (371)
+..+|..|.++|+|+||+|||+||||+|||+||.++.|+ ++. ++|.++||+||+++. .+.++.. ....+
T Consensus 17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~---~~V~dlTleqL~~l~----~~~~~~~---~~~~~ 85 (300)
T cd08578 17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK---LLVSDLTAEQLESIL----DYSLDDL---NSEIS 85 (300)
T ss_pred CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc---EEeecCcHHHHhccC----Ccccccc---ccccc
Confidence 456899999999999999999999999999999999765 665 999999999999994 3443221 01111
Q ss_pred ccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCccc--------chhHHHHHHHHHHHHHHHHhc--------CCC
Q 017440 158 RIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLV--------YTEEELTHALEAILKVVFEHA--------QGR 221 (371)
Q Consensus 158 ~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~--------~~~~~~~~~~~~vl~~l~~~~--------~~~ 221 (371)
....|....++++|||+|+|+.+++++++|||||+|.... ....+++.+++.+++.+.+|. ..+
T Consensus 86 ~~~~~~~~~~~~~pTL~evL~~lp~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~har~~~~~~~~~R 165 (300)
T cd08578 86 DMVDLKRLLSSRVVSLETLLELLPPSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFDHARYLRHTPGSTR 165 (300)
T ss_pred ccchhhhhcCCcCCCHHHHHHhhccCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHHHHHhhhhcccCCCCC
Confidence 2223444567899999999999998999999999987531 123468899999999999885 468
Q ss_pred CeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCc-----------------------ccCCCCcccHHHHHHHHHhCCCce
Q 017440 222 PIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQ-----------------------TCTDVRRSSLDEAIKVCLAGGLQG 278 (371)
Q Consensus 222 ~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 278 (371)
+++|+|||+++|..++.++|.+|++|++.++.. .+.|.|..++.+++++|...++.|
T Consensus 166 ~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA~~~nL~G 245 (300)
T cd08578 166 SIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFAKNNNLLG 245 (300)
T ss_pred ceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchhhhHHHHHHHHHHcCCcE
Confidence 999999999999999999999999999887643 367788889999999999999999
Q ss_pred EecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 279 IVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 279 v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
++++.+.+...|.+|+.++++|+.+++|| -+..+ ........||||++.+..
T Consensus 246 iv~~~~~L~~~P~lV~~ik~~GL~lv~~g-~~~~~-~~~~~~~~~vnG~~~~~~ 297 (300)
T cd08578 246 LILPYSLLNIVPQLVESIKSRGLLLIASG-EPESL-IEVAEAGDGINGVVTEDE 297 (300)
T ss_pred EEecHHHHhhChHHHHHHHHcCCEEEEEC-CCCcc-ccccccccCCceEEeCCE
Confidence 99999888889999999999999999996 32111 222234689999998863
No 42
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=100.00 E-value=2.2e-35 Score=260.52 Aligned_cols=168 Identities=24% Similarity=0.319 Sum_probs=138.1
Q ss_pred EEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHH
Q 017440 53 VMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLA 132 (371)
Q Consensus 53 iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~ 132 (371)
++||||+++ .+||||++||+.|++.|+++||+|||+|+||++||+||.+++|++.
T Consensus 1 iiaHRG~~~-----------~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~-------------- 55 (179)
T cd08555 1 VLSHRGYSQ-----------NGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA-------------- 55 (179)
T ss_pred CEecCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC--------------
Confidence 589999998 8999999999999999999999999999999999999999988762
Q ss_pred HHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-------CceEEEEeccCCcccchhHHHHH
Q 017440 133 EFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-------SVGFNVELKFDDQLVYTEEELTH 205 (371)
Q Consensus 133 eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-------~~~l~iEiK~~~~~~~~~~~~~~ 205 (371)
++++|||+|+|+.++. .+.++||+|.+... + ..
T Consensus 56 ----------------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~-~-----~~ 95 (179)
T cd08555 56 ----------------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPE-Y-----DE 95 (179)
T ss_pred ----------------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCc-c-----hH
Confidence 2479999999999974 68999999986531 1 14
Q ss_pred HHHHHHHHHHHhc---CCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecc
Q 017440 206 ALEAILKVVFEHA---QGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE 282 (371)
Q Consensus 206 ~~~~vl~~l~~~~---~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 282 (371)
+.+++++.+++++ +.++++++||. .+ .. .. ..+ .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~v~i~sf~-----------------~~-~~-----------~~---------~~~-----~ 132 (179)
T cd08555 96 FLAKVLKELRVYFDYDLRGKVVLSSFN-----------------AL-GV-----------DY---------YNF-----S 132 (179)
T ss_pred HHHHHHHHHHHcCCcccCCCEEEEeec-----------------cc-CC-----------Ch---------hcc-----c
Confidence 5778889999987 77899999990 00 00 00 000 0
Q ss_pred cccccCChHHHHHHHHhCCeEEEecccCC-hHHHHHHHHhcCceEEEeCC
Q 017440 283 VRAIFKNPGAIKKIKEAKLCLVSYGELNN-VPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 283 ~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~-~~~~~~l~~~~GVdgIiTD~ 331 (371)
. ....++++++.+|++|++|++| |+|+ ++++.+++ ++|||||+||+
T Consensus 133 ~-~~~~~~~~v~~~~~~g~~v~~w-tvn~~~~~~~~l~-~~Gvd~i~TD~ 179 (179)
T cd08555 133 S-KLIKDTELIASANKLGLLSRIW-TVNDNNEIINKFL-NLGVDGLITDF 179 (179)
T ss_pred c-hhhcCHHHHHHHHHCCCEEEEE-eeCChHHHHHHHH-HcCCCEEeCCC
Confidence 0 1235899999999999999999 9999 99999986 79999999996
No 43
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.91 E-value=3.8e-23 Score=180.83 Aligned_cols=176 Identities=13% Similarity=0.080 Sum_probs=125.2
Q ss_pred chHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCCccccccCC
Q 017440 77 NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKD 156 (371)
Q Consensus 77 NTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~ 156 (371)
||++||++|++. |+||+|||+| ||++||+||.+++
T Consensus 7 NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~------------------------------------------ 41 (192)
T cd08584 7 NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK------------------------------------------ 41 (192)
T ss_pred HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC------------------------------------------
Confidence 799999999999 9999999999 9999999998863
Q ss_pred CccccccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHH
Q 017440 157 GRIFEWKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLI 236 (371)
Q Consensus 157 g~~~~~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l 236 (371)
++|||+|+|+.++ +..++||||.. .+.+++++++++++..++++|+||++..+..+
T Consensus 42 ------------~~PtLeEvL~~~~-~~~l~inIK~~-----------~l~~~l~~li~~~~~~~~vi~ssf~~~~l~~~ 97 (192)
T cd08584 42 ------------NGELLEDWLKEYN-HGTLILNIKAE-----------GLELRLKKLLAEYGITNYFFLDMSVPDIIKYL 97 (192)
T ss_pred ------------CCCCHHHHHHhcc-cccEEEEECch-----------hHHHHHHHHHHhcCCcceEEEEcCCHHHHHHH
Confidence 2589999999996 45699999964 45788999999999999999999999999998
Q ss_pred HHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc-ccccCChHHHHHHHHhCCeEEEec----ccCC
Q 017440 237 RKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV-RAIFKNPGAIKKIKEAKLCLVSYG----ELNN 311 (371)
Q Consensus 237 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~v~~~~~~Gl~v~~wg----tvn~ 311 (371)
+.-.+.+.+...-.. .....+.... .+.+|-++. ....++.+.++...++|+++..=. -.+.
T Consensus 98 ~~~~~~i~tr~Se~E-----------~~~~~~~~~~--~~~~VW~D~f~~~~~~~~~~~~~~~~~~~~c~VSpELh~~~~ 164 (192)
T cd08584 98 ENGEKRTATRVSEYE-----------PIPTALSLYE--KADWVWIDSFTSLWLDNDLILKLLKAGKKICLVSPELHGRDH 164 (192)
T ss_pred hcCCCeeEEeecccc-----------cchHHHHhhc--cccEEEEecccccCCCHHHHHHHHHCCcEEEEECHHHcCCCh
Confidence 875443333221110 1111111111 245555543 334579999999999999986420 1233
Q ss_pred hHHHHHHH--H--hcCceEEEeCChHH
Q 017440 312 VPEVVYMQ--R--FMGIEGVIVDLVSE 334 (371)
Q Consensus 312 ~~~~~~l~--~--~~GVdgIiTD~p~~ 334 (371)
.+.+...+ . ..--++||||+|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 165 LAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred HHHHHHHHhhhhccccCeeEeccCccc
Confidence 33333221 1 12268999999975
No 44
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.81 E-value=3.6e-20 Score=178.32 Aligned_cols=237 Identities=23% Similarity=0.281 Sum_probs=160.2
Q ss_pred CceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCcccccccccc
Q 017440 50 KFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDI 129 (371)
Q Consensus 50 ~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~ 129 (371)
...+++|||+++ .+||||++||++|++.|+|.||+||++|+||++|++||.+.+|+++.. ..+.++
T Consensus 68 ~~~i~~~rga~g-----------~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~---~~~~~l 133 (341)
T KOG2258|consen 68 GWLIIAHRGASG-----------DAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVP---EIVFDL 133 (341)
T ss_pred CceeEeccCCCC-----------CCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeecce---eeeccC
Confidence 688999999877 899999999999999999999999999999999999999999998876 779999
Q ss_pred CHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHhcCC-CceEEEEeccCCcccchhHHHHHHHH
Q 017440 130 TLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALE 208 (371)
Q Consensus 130 T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~~ 208 (371)
||.|++++........ . .....-+++|+|+|....+-+ ++.+.-|.|. .+.+
T Consensus 134 t~~e~~~l~~~~~~~~----------~-----~~~~~~~~~~~l~e~v~~~~~~n~~~l~d~~~------------~~~~ 186 (341)
T KOG2258|consen 134 TWMELRKLGPKIENPF----------A-----GPIITLEKLLTLAEAVASVVGNNVAMLNDVKL------------LVVD 186 (341)
T ss_pred CHHHHhccCccccCcc----------c-----ccccchhhhccHHHHHHHHHcCChhhhhhhhh------------hhHH
Confidence 9999999964321100 1 112345789999999999864 6666667661 2234
Q ss_pred HHHHHHHH----hcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 209 AILKVVFE----HAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 209 ~vl~~l~~----~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
.+++.+.+ .+...+++++||++.++.++++..|.+.++..+....-. . ..+..+ ...++.....
T Consensus 187 ~vl~~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~ls------~-~~dik~-----~~~~~~~~~~ 254 (341)
T KOG2258|consen 187 KVLEALKNATSDFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTFLS------G-IEDIKK-----RAFAVVSSKL 254 (341)
T ss_pred HHHHHHHHHhcCCCccceEEEEecCcHHHHHhccCCceEEecceecchhhc------c-chhhhc-----ccceeeechH
Confidence 44444444 445667999999999999999887774444433221100 0 000001 1111211110
Q ss_pred c---------ccCChHHHHHHHHhCCeEEEecccCChHHHH-------------HHHHhcCceEEEeCChHHHHHHHHh
Q 017440 285 A---------IFKNPGAIKKIKEAKLCLVSYGELNNVPEVV-------------YMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 285 ~---------~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~-------------~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
. ......++..+++.++.++.+ ..|.. ... .+....|++|.+|+++-.+..+.++
T Consensus 255 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~-~~~~e-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 331 (341)
T KOG2258|consen 255 AIFPVSDSLVLAITKNVVAPLQKLNLVVYVE-VFNNE-VVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRLTDN 331 (341)
T ss_pred HHHHHHHHHhhhhhcceeeehhcCCcEEEEE-Eeecc-ceeeccccccCceEeeeeeccccccCceeeccchhhHhhcc
Confidence 0 112335677788888999988 56654 111 1123467777778877776666544
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.60 E-value=1.2e-14 Score=132.48 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=115.0
Q ss_pred HHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCCccccccCCCcccc
Q 017440 82 FNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFE 161 (371)
Q Consensus 82 f~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~ 161 (371)
|..|++.||++||.|||++ ||+++|.||..+.|. + ..+.++++++|.++-...
T Consensus 15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~-~-----~tl~~Lyl~pL~~~l~~~-------------------- 67 (228)
T cd08577 15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP-A-----RTLESLYLDPLLEILDQN-------------------- 67 (228)
T ss_pred hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc-c-----CCHHHHhHHHHHHHHHHc--------------------
Confidence 7889999999999999998 999999999998766 2 569999999998862110
Q ss_pred ccccCCCCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCC--------CCe-EEecCC-HH
Q 017440 162 WKVEKDTPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG--------RPI-MFSSFQ-PD 231 (371)
Q Consensus 162 ~~~~~~~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~--------~~v-~i~Sf~-~~ 231 (371)
+.... ......+.|+||||......+ .++.++++.+++.+.. +.| ++.|-| +.
T Consensus 68 -----n~~~~------~~~~~~l~LlIDiKt~g~~t~------~~l~~~L~~~~~~~~~~~~~~~~~~pvtvV~tGn~p~ 130 (228)
T cd08577 68 -----NGQAY------NDPEQPLQLLIDIKTDGESTY------PALEEVLKPYIDIGYLSYYDKLVPGPVTVVITGNRPK 130 (228)
T ss_pred -----CCCCC------CCCCCceEEEEEECCCChHHH------HHHHHHHHHHHhcCceeecCcEEecCeEEEEeCCCCh
Confidence 00000 222247899999999864321 3566677777776543 333 333333 32
Q ss_pred HHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHH--HHHHHHHhCCCceEeccc-ccccCChHHHHHHHHhCCeEEEec
Q 017440 232 AALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLD--EAIKVCLAGGLQGIVSEV-RAIFKNPGAIKKIKEAKLCLVSYG 307 (371)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~-~~~~~~~~~v~~~~~~Gl~v~~wg 307 (371)
.+ +. +..+....+++... .........+. ....+.+..+..+..... ...-.-.++++.+|++|+++.+|
T Consensus 131 ~~--~~---~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g~~~~~q~~~l~~~v~~a~~~Gl~vr~W- 204 (228)
T cd08577 131 EE--VK---SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKGDTPEDEKEKLKSIIDKAHARGKKVRFW- 204 (228)
T ss_pred hh--hc---cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-
Confidence 22 11 22222222222110 00000000000 001122222221111000 00001136789999999999999
Q ss_pred ccCC-hHHHHHHHHhcCceEEEeCC
Q 017440 308 ELNN-VPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 308 tvn~-~~~~~~l~~~~GVdgIiTD~ 331 (371)
|+++ .+.++.++ ++|||+|+||+
T Consensus 205 tv~~~~~~~~~l~-~~GVd~I~TDd 228 (228)
T cd08577 205 GTPDRPNVWKTLM-ELGVDLLNTDD 228 (228)
T ss_pred ccCChHHHHHHHH-HhCCCEEecCC
Confidence 8874 67787775 79999999995
No 46
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.51 E-value=1.3e-12 Score=120.29 Aligned_cols=212 Identities=16% Similarity=0.090 Sum_probs=123.4
Q ss_pred chHHHHHHHHhCCCCEEEEEEeeecCCeE-EEecCCCcccccCCccccccccccCH----HHHhccCCCCCCCCcCCccc
Q 017440 77 NTILSFNAAARHPLDFIEFDVQVTRDGCP-VIFHDNFIFTKDEGEIIEKRVTDITL----AEFLSYGPQNDPENVGKPML 151 (371)
Q Consensus 77 NTl~Af~~A~~~Gad~IE~DV~lTkDG~l-Vv~HD~~L~r~t~g~~~~~~i~~~T~----~eL~~l~~~~~~g~~~~~~~ 151 (371)
||++.+..|++.||..||+||...++|.+ ..+||---+ +..+. ...-.+ +++++..
T Consensus 8 n~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcd-c~r~c-----~~~~~f~~~l~~~r~~t------------- 68 (265)
T cd08576 8 NDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCD-CFRGC-----TAREMFDEILDYRRNGT------------- 68 (265)
T ss_pred ccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccc-cccCC-----cHHHHHHHHHHHHHhcC-------------
Confidence 89999999999999999999999999977 566663322 11010 011111 1222110
Q ss_pred cccCCCccccccccCCCCccCHHHHHHhcC-CCceEEEEeccCCcccc-hhHHHHHHHHHHHHHHHHhcCCCCeEE--ec
Q 017440 152 RKTKDGRIFEWKVEKDTPLCTLQEAFEKVD-QSVGFNVELKFDDQLVY-TEEELTHALEAILKVVFEHAQGRPIMF--SS 227 (371)
Q Consensus 152 ~~~~~g~~~~~~~~~~~~iptL~evL~~~~-~~~~l~iEiK~~~~~~~-~~~~~~~~~~~vl~~l~~~~~~~~v~i--~S 227 (371)
-|- ++ +=+.+.+|||.++.... .-.....+++++++-....+...|+++ +.
T Consensus 69 ------------------tpg-------~~~~l~lv~lDlK~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~ 123 (265)
T cd08576 69 ------------------TPG-------FRENLIFVWLDLKNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSI 123 (265)
T ss_pred ------------------CCC-------ccceeEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEe
Confidence 000 11 23688999999875311 111223344444443333322235432 22
Q ss_pred C---CHHHHHHHHHHCCC--CC------eEEEcCCCCcccCCCCcccHHHHHHHHHhCC------CceEecccccccCCh
Q 017440 228 F---QPDAALLIRKLQST--YP------VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGG------LQGIVSEVRAIFKNP 290 (371)
Q Consensus 228 f---~~~~l~~l~~~~p~--~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 290 (371)
. +.+.++.++....+ .. +++-+... .++...-+..+..| -+|+.-.......++
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~kvg~df~~n---------~~l~~~~~~~~~~~~~h~w~~dGitnC~~~~~~~~ 194 (265)
T cd08576 124 PSITDSRFFKGIRDRLNSEEAVSGLLDKVGKDFSGN---------EDLEDIRRVYDYGGDGHIWQSDGITNCLEKYRTCA 194 (265)
T ss_pred ccccchHHHHHHHHHHHhcCchhhHHHhhcccccCC---------CChHHHHHHHHhcCcCceecCCCcccccccccccH
Confidence 2 34556666654322 11 22222211 22333333333333 223322111113578
Q ss_pred HHHHHHHHhCC-----eEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhhh
Q 017440 291 GAIKKIKEAKL-----CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFI 343 (371)
Q Consensus 291 ~~v~~~~~~Gl-----~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~~ 343 (371)
++++.+|++|. +|++| |||+.+.+.+++ ++||||||||+|..+.+++++..
T Consensus 195 ~lv~~~~~rd~~g~i~kV~vW-TVn~~~~~~~ll-~~GVDGIITD~P~~i~~~l~~~~ 250 (265)
T cd08576 195 RLREAIKKRDTPGYLGKVYGW-TSDKGSSVRKLL-RLGVDGIITNYPKRIIDVLKESE 250 (265)
T ss_pred HHHHHHHHcCCCCcCCeEEEE-eCCCHHHHHHHH-hcCCCEEEECCHHHHHHHHHhcc
Confidence 99999999999 99999 999999999986 79999999999999998887754
No 47
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.92 E-value=1.4e-09 Score=107.40 Aligned_cols=327 Identities=32% Similarity=0.388 Sum_probs=197.4
Q ss_pred CCccceeccCCCCCCCcCCccccccccccccccCCCccccccccCCCCCCceEEecCCCCCCccCCchhhhcccccchHH
Q 017440 1 MALKAVHVSDVPNLDQVPGNVTLNYLHSPRVCKGVNEDCDETKSGYKFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTIL 80 (371)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~ 80 (371)
|+++.+++.+.+=+++. ++. .....|..+.+........+++|||...+..++....++..-||+..
T Consensus 5 l~~~~v~~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~n~~~~~~~~~~~vg~~~~l 71 (417)
T KOG2421|consen 5 LALLEFEENERLVLEPP------------PVF-LEEGNEDESRSLFSQVAFPVIGHFGVGKNQLLYPDEYVAVVGENSAL 71 (417)
T ss_pred ccccceeeeeeeccCCc------------ccc-cccccccCCccccccccceeecccccceecccCCcceeEeecccccc
Confidence 45566666665554443 222 22334444455555666779999999997766666666778899999
Q ss_pred H-HHHHHhCCCCEEEEEEeee-cCCe-EEEecCCCcccccCCccccccccccCHHHHhc-------------cCCCCCCC
Q 017440 81 S-FNAAARHPLDFIEFDVQVT-RDGC-PVIFHDNFIFTKDEGEIIEKRVTDITLAEFLS-------------YGPQNDPE 144 (371)
Q Consensus 81 A-f~~A~~~Gad~IE~DV~lT-kDG~-lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~-------------l~~~~~~g 144 (371)
+ |..|...+.+.+|+|++++ +|++ +|++|+....-...+ ....+.+.+++-. .......+
T Consensus 72 g~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (417)
T KOG2421|consen 72 GNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNIVIEYRYG----ITSEDRTTEQLLEEFLSHGGQRDGIEDEQNRSDG 147 (417)
T ss_pred cccchhhhcCccccchheeeeeccccceeEecccccccccee----eeecCchhhheeeeeecccceeeeeeccccccCC
Confidence 9 9999999999999999999 9999 888888543211000 0000111100000 00000000
Q ss_pred CcCCccccccCCC--------------ccccccc---cCCCCccCHHHHHHhcCC-CceEEEEeccCCcccchhH--HHH
Q 017440 145 NVGKPMLRKTKDG--------------RIFEWKV---EKDTPLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEE--ELT 204 (371)
Q Consensus 145 ~~~~~~~~~~~~g--------------~~~~~~~---~~~~~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~--~~~ 204 (371)
.-....++..+.| .++.+.. .......|++++....+. ....+++.|.......... ...
T Consensus 148 ~d~~g~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~~~f~~~~~~~~~q~~l~ 227 (417)
T KOG2421|consen 148 SDVFGLYRGLSEGKRLERGCLRVRLTPAVPKGNVLLSVIDDSFDTLKEVFKPSNSLDLSFVVELKFDDQTPRSEEQYELG 227 (417)
T ss_pred CCcccccccchhhhhhhhhhhheeccccccccccccccccccccchhhhccCCcccceeeeEEeecccCCcccccceeee
Confidence 0000011111222 1111111 134567788888887775 7889999998765443322 111
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
.....+.+.....+-...+++++|.++....++....-+|..++..++.....+.+..+...+.+.+....+.+......
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~fs~f~~d~~~~~~~~~y~lP~~~~~~~G~~~l~~~~a~s~~~~~~~~l~~lv~~~~~~~~ 307 (417)
T KOG2421|consen 228 HGFITVFSIVSERGDNRALIFSSFNEDICEELVGYSYVLPSLFLGTGGAELLPDTRASSLREAGQLCLEYLVIGPVSTVG 307 (417)
T ss_pred eEeeeeeeeeccCCccceeeeeccccccchhhhcccccCCcccccCCceeEecchhhccccchhhhhhhhhhcccccccc
Confidence 11112222222333345789999999999999877666788777766655444555556666777777766655554444
Q ss_pred cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhhhc
Q 017440 285 AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
...+++.+++.+++.++-+.+++--+........+...|.++++.|....+.+-+.++..
T Consensus 308 ~~~l~~~~~~~w~~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dv 367 (417)
T KOG2421|consen 308 PVDLRPSLINYWKKNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDV 367 (417)
T ss_pred ceecChHHhhhhcccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhc
Confidence 345789999999998888777643333333222223589999999999999888887754
No 48
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=98.54 E-value=9.7e-08 Score=86.16 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~ 114 (371)
..+|||++||+.|++.||++||+|||-++||+|||+||.|+.
T Consensus 26 l~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt 67 (229)
T cd08592 26 LSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT 67 (229)
T ss_pred cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 689999999999999999999999999999999999998863
No 49
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=98.50 E-value=1.4e-07 Score=57.09 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=23.7
Q ss_pred eEEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 302 CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 302 ~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
+|+.| |+|+.+.++.++ ++|||||+||+|.
T Consensus 1 kV~~W-T~d~~~~~~~~l-~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFW-TPDKPASWRELL-DLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEE-T--SHHHHHHHH-HHT-SEEEES-HH
T ss_pred CeEEe-cCCCHHHHHHHH-HcCCCEeeCCCCC
Confidence 58999 999999999986 7999999999985
No 50
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=98.42 E-value=2.8e-07 Score=82.92 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=39.9
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~ 114 (371)
..+|||++||..|+..||++||+|||-++||+|||+||.|+.
T Consensus 26 l~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tlt 67 (229)
T cd08627 26 FSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTLT 67 (229)
T ss_pred cCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence 578999999999999999999999999999999999998873
No 51
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=98.24 E-value=1.2e-07 Score=93.74 Aligned_cols=94 Identities=29% Similarity=0.413 Sum_probs=71.6
Q ss_pred CcCCccccccccccccccCCCccccccc---cCCCC-CCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCC
Q 017440 16 QVPGNVTLNYLHSPRVCKGVNEDCDETK---SGYKF-PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLD 91 (371)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad 91 (371)
...|.+++-|++..|...-- +|.+.. ++|++ ...+-++|||.+..+-.. +....|||+..+..|++.|+|
T Consensus 288 ~~~~~~~l~~lv~~~~~~~~--~~~l~~~~~~~w~~~~~~l~~g~rg~g~sy~~~----~~~~~ent~~~~~~~~~~~ad 361 (417)
T KOG2421|consen 288 REAGQLCLEYLVIGPVSTVG--PVDLRPSLINYWKKNGLSLNTGHRGNGTSYTVL----SQVLRENTIVIVDNVLELGAD 361 (417)
T ss_pred cchhhhhhhhhhcccccccc--ceecChHHhhhhcccchhhhccCCcCCchhhhh----hhhhccceeeeehhHHHhhhh
Confidence 45677888888877776222 244443 56654 556889999998743211 125799999999999999999
Q ss_pred EEEEEEeeecCCeEEEecCCCccc
Q 017440 92 FIEFDVQVTRDGCPVIFHDNFIFT 115 (371)
Q Consensus 92 ~IE~DV~lTkDG~lVv~HD~~L~r 115 (371)
++|+|||+|+|.++||+||..+..
T Consensus 362 ~ve~dvqlt~D~~~vvyh~f~~~~ 385 (417)
T KOG2421|consen 362 LVEMDVQLTKDLVPVVYHDFVLLV 385 (417)
T ss_pred HHHhhcccccCCceeeeccceeEE
Confidence 999999999999999999987754
No 52
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=97.93 E-value=1e-05 Score=74.63 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|+++|+.|+..||++||+|||-++||+|||+||.|+
T Consensus 27 ~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tl 66 (260)
T cd08597 27 RGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTL 66 (260)
T ss_pred cCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCcc
Confidence 4567889999999999999999999999999999999886
No 53
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=97.52 E-value=0.00015 Score=60.85 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus 25 ~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~ 65 (135)
T smart00148 25 LWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF 65 (135)
T ss_pred ccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence 57899999999999999999999999999999999999764
No 54
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=97.16 E-value=0.1 Score=48.09 Aligned_cols=196 Identities=19% Similarity=0.288 Sum_probs=109.6
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEeeec------CCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCC
Q 017440 75 KENTILSFNAAARHPLDFIEFDVQVTR------DGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGK 148 (371)
Q Consensus 75 PENTl~Af~~A~~~Gad~IE~DV~lTk------DG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~ 148 (371)
--|+.+.++.|+...+.+||.||.+-+ +++||..|.+.. -+|+|++|.
T Consensus 10 avNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~------------~SdltLee~-------------- 63 (244)
T PF10223_consen 10 AVNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT------------DSDLTLEEW-------------- 63 (244)
T ss_pred ccCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC------------CCcCcHHHH--------------
Confidence 348899999999999999999999984 789999997542 234555444
Q ss_pred ccccccCCCccccccccCCCCccCHHHHHHhc-CCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHh--cCCCCeEE
Q 017440 149 PMLRKTKDGRIFEWKVEKDTPLCTLQEAFEKV-DQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEH--AQGRPIMF 225 (371)
Q Consensus 149 ~~~~~~~~g~~~~~~~~~~~~iptL~evL~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~--~~~~~v~i 225 (371)
|+.+ +...++-+|+|... .+...+++|++. .....|++
T Consensus 64 ----------------------------L~~v~~~~kGIKLDFKs~e-----------av~pSl~~L~~~~~~l~~PvWi 104 (244)
T PF10223_consen 64 ----------------------------LDEVLSSRKGIKLDFKSIE-----------AVEPSLDLLAKLSDKLTRPVWI 104 (244)
T ss_pred ----------------------------HHHHhccCcEEEEeccCHH-----------HHHHHHHHHHHHhhccCCCeeE
Confidence 4433 35778999999853 344444555442 13333433
Q ss_pred ec------CC---------HHHHHHHHHHCCCCCe--EEEcCCCCcccC-CCCcccHHHHHHHHHh---CCCceEecccc
Q 017440 226 SS------FQ---------PDAALLIRKLQSTYPV--FFLTNGGAQTCT-DVRRSSLDEAIKVCLA---GGLQGIVSEVR 284 (371)
Q Consensus 226 ~S------f~---------~~~l~~l~~~~p~~~~--~~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 284 (371)
.. ++ ..++..+++.+|+..+ |+.+........ ......+.+..+.++. .. ..|....+
T Consensus 105 NADIl~Gp~~~~~~~~Vd~~~Fl~~v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~-Q~VTFpvR 183 (244)
T PF10223_consen 105 NADILPGPNGPTIPGPVDAKEFLSLVAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLP-QPVTFPVR 183 (244)
T ss_pred eeeeccCCCCCCCCcccCHHHHHHHHHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCC-Cceeeeeh
Confidence 21 22 2467778888775433 222211110000 0111234556666666 22 12332222
Q ss_pred cccC--ChHHHHHH-HH-hCCeEEEecccCC---hHHHHHHHHhcCceEEEeCChHHHH
Q 017440 285 AIFK--NPGAIKKI-KE-AKLCLVSYGELNN---VPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 285 ~~~~--~~~~v~~~-~~-~Gl~v~~wgtvn~---~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
..++ +...+..+ .+ ....+-+|.-.+| .++..++.+..|.+-|..|-|+.++
T Consensus 184 A~l~~~S~~~l~wLL~~s~r~SLTvWs~~~D~v~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 184 AGLARQSWPQLSWLLQQSPRYSLTVWSSKSDPVSVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred hhhhhccHHHHHHHHcCCCCceEEEEecCCCCccHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 1111 11223333 22 2567788832333 3344455556899999999998765
No 55
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=97.05 E-value=0.00075 Score=60.96 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
..-+.|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl 66 (227)
T cd08594 26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (227)
T ss_pred ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34577889999999999999999999999999999998875
No 56
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=96.85 E-value=0.0013 Score=60.58 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl 66 (257)
T cd08595 27 VGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL 66 (257)
T ss_pred cCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence 4567889999999999999999999999999999999876
No 57
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=96.83 E-value=0.0016 Score=59.10 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|||=..||+|+|+|..++
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~ 66 (228)
T cd08599 27 SSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL 66 (228)
T ss_pred CCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence 3456788999999999999999999999999999998774
No 58
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=96.83 E-value=0.0015 Score=59.97 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl 66 (253)
T cd08632 27 LSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL 66 (253)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 4456789999999999999999999999999999999876
No 59
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=96.82 E-value=0.0015 Score=60.26 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08631 27 RGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF 66 (258)
T ss_pred cCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 3456899999999999999999999999999999999886
No 60
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=96.82 E-value=0.0015 Score=60.05 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
..-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 26 l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl 66 (254)
T cd08633 26 LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL 66 (254)
T ss_pred cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 34566889999999999999999999999999999999886
No 61
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=96.81 E-value=0.0017 Score=58.83 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
..-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (226)
T cd08558 26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL 66 (226)
T ss_pred cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence 35667889999999999999999999999999999998775
No 62
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=96.80 E-value=0.0015 Score=60.22 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-+||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08630 27 GGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTL 66 (258)
T ss_pred cCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 4457899999999999999999999999999999999876
No 63
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=96.78 E-value=0.0018 Score=59.66 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=35.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 75 KENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 75 PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 28 ~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~ 66 (254)
T cd08628 28 SESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR 66 (254)
T ss_pred cCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence 456789999999999999999999999999999999876
No 64
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=96.76 E-value=0.0017 Score=59.68 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl 66 (254)
T cd08596 27 KGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL 66 (254)
T ss_pred CCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence 4467889999999999999999999999999999999886
No 65
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=96.71 E-value=0.002 Score=59.39 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl 66 (258)
T cd08629 27 TGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF 66 (258)
T ss_pred CCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 3456889999999999999999999999999999999876
No 66
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=96.68 E-value=0.0021 Score=59.37 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=36.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~ 66 (257)
T cd08593 27 KGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL 66 (257)
T ss_pred cCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence 4457899999999999999999999999999999999876
No 67
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=96.67 E-value=0.0023 Score=58.17 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~ 66 (231)
T cd08598 27 AGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTL 66 (231)
T ss_pred CCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCC
Confidence 4567899999999999999999999988899999998775
No 68
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.64 E-value=0.0022 Score=59.08 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeec--CCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTk--DG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-. ||+|||+|..|+
T Consensus 27 ~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl 68 (257)
T cd08626 27 GGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM 68 (257)
T ss_pred cCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence 4457899999999999999999999855 889999999886
No 69
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.50 E-value=0.0031 Score=58.15 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEeeec--CCeEEEecCCCc
Q 017440 75 KENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFI 113 (371)
Q Consensus 75 PENTl~Af~~A~~~Gad~IE~DV~lTk--DG~lVv~HD~~L 113 (371)
-+-|.++|..|+..||.+||+|+|=-. ||+|||+|..|+
T Consensus 28 g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tl 68 (258)
T cd08623 28 GNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTM 68 (258)
T ss_pred CccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCc
Confidence 456889999999999999999999866 689999999876
No 70
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.48 E-value=0.0032 Score=58.24 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeec--CCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTR--DGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTk--DG~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-. ||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tl 68 (261)
T cd08624 27 SGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM 68 (261)
T ss_pred CCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCc
Confidence 3467899999999999999999999653 789999999886
No 71
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=96.37 E-value=0.0043 Score=57.26 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecC--CeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRD--GCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkD--G~lVv~HD~~L 113 (371)
.-+-|.++|..|+..||.+||+|+|=-.| |+|||+|..|+
T Consensus 27 ~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tl 68 (257)
T cd08591 27 GGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTM 68 (257)
T ss_pred cCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCC
Confidence 34678899999999999999999999775 99999999886
No 72
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=96.18 E-value=0.0059 Score=56.58 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=35.1
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeee--cCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVT--RDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lT--kDG~lVv~HD~~L 113 (371)
.-+-|.+||..|+..||.+||+|+|=- .||+|||+|..|+
T Consensus 27 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~ 68 (258)
T cd08625 27 TGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTM 68 (258)
T ss_pred CCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCcc
Confidence 456789999999999999999999965 3589999999886
No 73
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.54 E-value=0.011 Score=61.56 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=39.1
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.--|.|++||..|+.+||.+||+|-|=-.||.+|++|..|+
T Consensus 333 lrSESSleaYar~LrMGCRCIELDCWdGpd~~pvIyHG~T~ 373 (1267)
T KOG1264|consen 333 LRSESSLEAYARCLRMGCRCIELDCWDGPDGKPVIYHGHTR 373 (1267)
T ss_pred cccccCHHHHHHHHHhCCeEEEeecccCCCCCceEEeccce
Confidence 46899999999999999999999999999999999999986
No 74
>PLN02230 phosphoinositide phospholipase C 4
Probab=94.52 E-value=0.037 Score=57.22 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIF 114 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~ 114 (371)
.-+-|.++|..|+..||.+||+|+|=-.+|+|||+|..|+-
T Consensus 140 ~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~t 180 (598)
T PLN02230 140 SSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTLT 180 (598)
T ss_pred cCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCCc
Confidence 45668899999999999999999998788999999998873
No 75
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=93.68 E-value=0.56 Score=39.57 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=31.4
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
+..+.-.++..+++.|+.++|+||+...++.++++|...
T Consensus 24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~ 62 (146)
T PF00388_consen 24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGIT 62 (146)
T ss_dssp HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTS
T ss_pred ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCE
Confidence 456777899999999999999999999999999999655
No 76
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.68 E-value=0.064 Score=55.95 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.-+-|+.+|..|++.||.+||+|+|=-.+|.|||+|..|+
T Consensus 314 ~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~Tl 353 (746)
T KOG0169|consen 314 GGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTL 353 (746)
T ss_pred CCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCccc
Confidence 3477899999999999999999999999999999999987
No 77
>PLN02228 Phosphoinositide phospholipase C
Probab=93.54 E-value=0.084 Score=54.34 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCe-EEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGC-PVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~-lVv~HD~~L 113 (371)
..-+-|.++|..|+..||.+||+|+|=-.||. +||+|..|+
T Consensus 130 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 171 (567)
T PLN02228 130 VNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTL 171 (567)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCcc
Confidence 34567899999999999999999999655665 899999887
No 78
>PLN02952 phosphoinositide phospholipase C
Probab=92.77 E-value=0.13 Score=53.27 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCC-eEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDG-CPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG-~lVv~HD~~L 113 (371)
..-+-|.++|..|+..||.+||+|+|=-.|| .+||+|..|+
T Consensus 147 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~ 188 (599)
T PLN02952 147 LSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTL 188 (599)
T ss_pred cCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcc
Confidence 4567788999999999999999999976665 4899999887
No 79
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=92.26 E-value=0.53 Score=44.15 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhCCCceEecccccc----------------cCChHHHHHHHHhCCeEEEecccCCh-----------HHH
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAI----------------FKNPGAIKKIKEAKLCLVSYGELNNV-----------PEV 315 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~----------------~~~~~~v~~~~~~Gl~v~~wgtvn~~-----------~~~ 315 (371)
...+.+++|.++|+.++.++..+. .--+++++.++++|+.|..| .-... ++.
T Consensus 33 ~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw-~~~~~~~~~~~~~~~~~~~ 111 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLW-YHSETGGNVANLEKQLDEA 111 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEE-EECCHTTBHHHHHCCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEE-EeCCcchhhHhHHHHHHHH
Confidence 456789999999999888764331 11258999999999999999 43333 222
Q ss_pred HHHHHhcCceEEEeCChHH
Q 017440 316 VYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 316 ~~l~~~~GVdgIiTD~p~~ 334 (371)
...+.++||.||=+|+...
T Consensus 112 f~~~~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDR 130 (273)
T ss_dssp HHHHHHCTEEEEEEE--SS
T ss_pred HHHHHHcCCCEEeeCcCCC
Confidence 2333579999999998644
No 80
>PLN02223 phosphoinositide phospholipase C
Probab=92.05 E-value=0.16 Score=51.71 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=32.6
Q ss_pred chHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 77 NTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 77 NTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
-|.++|..|+..||.+||+|+|=-.++.++|.|..|+
T Consensus 135 ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tl 171 (537)
T PLN02223 135 YSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNF 171 (537)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCce
Confidence 7899999999999999999999545556789999886
No 81
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.49 E-value=0.22 Score=51.52 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCe-EEEecCCCcc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGC-PVIFHDNFIF 114 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~-lVv~HD~~L~ 114 (371)
..-+-|.++|..|+..||.+||+|+|=-.||. ++|+|..|+-
T Consensus 127 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tlt 169 (581)
T PLN02222 127 LSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTLT 169 (581)
T ss_pred ccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCccc
Confidence 34567889999999999999999999766665 5799998863
No 82
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.37 E-value=11 Score=34.68 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+.++.+++. ++++.+=|-+++.+.+.++. +. +||++.=
T Consensus 177 ~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvG 215 (242)
T cd04724 177 ELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVG 215 (242)
T ss_pred HHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEEC
Confidence 567777765 46666554689888888875 67 9999986
No 83
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=91.30 E-value=0.35 Score=45.55 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
.+-..+..++..++..|+.++|+||+-.+|++++++|..+.
T Consensus 31 ~~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~ 71 (274)
T cd00137 31 VWGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF 71 (274)
T ss_pred ccCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence 34578899999999999999999999999999999997653
No 84
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.18 E-value=1.6 Score=40.79 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=69.4
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccC
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELN 310 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn 310 (371)
+.++.+|+..++.|+.++.+.. .+....+++.++.++..|++|+.++--..--..++++.++++|+......+.+
T Consensus 78 ~~~~~~r~~~~~~p~vlm~Y~N-----~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 78 ELVREIREKDPTIPIVLMTYYN-----PIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred HHHHHHHhcCCCCCEEEEeccc-----HHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 3466666566788887665432 11123577888999999999987652111112367888899999877643556
Q ss_pred ChH-HHHHHHH----------hcCceEEEeCChHHHHHHHHhhhc
Q 017440 311 NVP-EVVYMQR----------FMGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 311 ~~~-~~~~l~~----------~~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
+++ .++.+.. ..|+.|.-+..+..+.+.++...+
T Consensus 153 t~~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 153 TTDERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKA 197 (258)
T ss_pred CCHHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHh
Confidence 643 3443321 157888888888877777766554
No 85
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=90.90 E-value=1.1 Score=43.12 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=25.4
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecC
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRD 102 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkD 102 (371)
..+|+-..+..+++.|+..+|+||+-..+
T Consensus 42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~ 70 (324)
T cd08589 42 GLDYSHPPLADQLDSGVRQLELDVWADPE 70 (324)
T ss_pred cccCCCccHHHHHhhCcceEEEEEeecCC
Confidence 45688889999999999999999998665
No 86
>PLN02591 tryptophan synthase
Probab=89.56 E-value=2 Score=39.91 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=29.7
Q ss_pred hHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 290 PGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 290 ~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+.++.+++. +++|.+=.-++++++.+++. ..|+||++.=..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSa 220 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSA 220 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHH
Confidence 4567777774 56655422488899998875 799999987543
No 87
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.89 E-value=14 Score=33.29 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=79.1
Q ss_pred cCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCC-CcccCC
Q 017440 180 VDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGG-AQTCTD 258 (371)
Q Consensus 180 ~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~-~~~~~~ 258 (371)
+++++.+....+..++.. .. .....+.+.+.+.|.. .++.-+.+.++.+++. .++|+..+.... .. .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~----~~~~~~a~a~~~~G~~---~~~~~~~~~i~~i~~~-~~~Pil~~~~~d~~~--~~ 71 (221)
T PRK01130 3 LKGGLIVSCQALPGEPLH-SP----EIMAAMALAAVQGGAV---GIRANGVEDIKAIRAV-VDVPIIGIIKRDYPD--SE 71 (221)
T ss_pred cCCCEEEEecCCCCCCCC-CH----HHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHh-CCCCEEEEEecCCCC--CC
Confidence 345677777777443321 11 2234445555555432 2332347888888876 478886543211 00 00
Q ss_pred CCcccHHHHHHHHHhCCCceEecccccc-----cCChHHHHHHHH-hCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 259 VRRSSLDEAIKVCLAGGLQGIVSEVRAI-----FKNPGAIKKIKE-AKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~v~~~~~-~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+......+.++.+...|++.+.+..... ....++++.+++ .|+.+.+= +.+.+++..+. +.|+|.|.++
T Consensus 72 ~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~--v~t~ee~~~a~-~~G~d~i~~~ 146 (221)
T PRK01130 72 VYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMAD--CSTLEEGLAAQ-KLGFDFIGTT 146 (221)
T ss_pred ceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEe--CCCHHHHHHHH-HcCCCEEEcC
Confidence 1111122346778889999777654321 112478999999 88888764 66777887775 7999998664
No 88
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.20 E-value=4.5 Score=37.71 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEeccc
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtv 309 (371)
.+.++.+++..+++|.+++.+... +....++..++.+++.|++|+.+.---.-....+.+.+.++|+......+.
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Np-----i~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNP-----IFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccH-----HHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456777777789999998876432 222356778889999999987754211112346888889999886655356
Q ss_pred CChHH-HHHHHH----------hcCceEEEeCChHHHHHHHHhh
Q 017440 310 NNVPE-VVYMQR----------FMGIEGVIVDLVSEITEAVSDF 342 (371)
Q Consensus 310 n~~~~-~~~l~~----------~~GVdgIiTD~p~~l~~~l~~~ 342 (371)
+.+++ ++++.. ..||.|+-......+.+.+++.
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~v 200 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRV 200 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHH
Confidence 66544 433321 1477777666444444444443
No 89
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=87.41 E-value=1.2 Score=41.44 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCC
Q 017440 232 AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNN 311 (371)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~ 311 (371)
.++.+|+..++.|+.++.+.. .+....+++.++.|+..|++|+...---.--..++.+.++++|+.....-+.++
T Consensus 77 ~~~~ir~~~~~~pivlm~Y~N-----~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t 151 (259)
T PF00290_consen 77 LVKEIRKKEPDIPIVLMTYYN-----PIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTT 151 (259)
T ss_dssp HHHHHHHHCTSSEEEEEE-HH-----HHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS
T ss_pred HHHHHhccCCCCCEEEEeecc-----HHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 456666667788887776431 111123566788888899998765421111234677888999998665534544
Q ss_pred hHH-HHHHHH----------hcCceEEEeCChHHHHHHHHhhhc
Q 017440 312 VPE-VVYMQR----------FMGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 312 ~~~-~~~l~~----------~~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
+++ +.++.. ..|+.|.-++.+..+.+.++...+
T Consensus 152 ~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~ 195 (259)
T PF00290_consen 152 PEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKK 195 (259)
T ss_dssp -HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHh
Confidence 443 444321 167777778888888887776543
No 90
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=87.08 E-value=4 Score=38.18 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccC
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELN 310 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn 310 (371)
+.++.+|+ .+++|+.++.+.. .+....+++.++.|++.|++++..+.--.--..++.+.++++|+.....-+.+
T Consensus 81 ~~~~~~r~-~~~~p~vlm~Y~N-----~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 81 SILSEVNG-EIKAPIVIFTYYN-----PVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred HHHHHHhc-CCCCCEEEEeccc-----HHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34556653 3677876555432 11123567788999999999988764322123468889999998754432566
Q ss_pred ChH-HHHHHHH----------hcCceEEEeCChHHHHHHHHhhhc
Q 017440 311 NVP-EVVYMQR----------FMGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 311 ~~~-~~~~l~~----------~~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
++. .+..+.. ..|+.|.-++.+..+.++++...+
T Consensus 155 T~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 155 SSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred CCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH
Confidence 643 4444321 267888777777777777665443
No 91
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=86.90 E-value=2.7 Score=36.71 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=39.1
Q ss_pred CChHHHHHHHHhCCeEEEe-----cccCChHHHHHHHHhcC-ceEEEeCChHHHHHHHHh
Q 017440 288 KNPGAIKKIKEAKLCLVSY-----GELNNVPEVVYMQRFMG-IEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~v~~w-----gtvn~~~~~~~l~~~~G-VdgIiTD~p~~l~~~l~~ 341 (371)
.-++.++.+|++|+.|++. |--+|...+.++. +.+ +|||||=++..++.+.+.
T Consensus 32 ~l~~~v~~~~~~gK~vfVHiDli~Gl~~D~~~i~~L~-~~~~~dGIISTk~~~i~~Ak~~ 90 (175)
T PF04309_consen 32 NLKDIVKRLKAAGKKVFVHIDLIEGLSRDEAGIEYLK-EYGKPDGIISTKSNLIKRAKKL 90 (175)
T ss_dssp CHHHHHHHHHHTT-EEEEECCGEETB-SSHHHHHHHH-HTT--SEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCEEEEEehhcCCCCCCHHHHHHHH-HcCCCcEEEeCCHHHHHHHHHc
Confidence 3478999999999999988 2234666666664 555 999999999999988665
No 92
>PLN02591 tryptophan synthase
Probab=86.53 E-value=5.2 Score=37.14 Aligned_cols=106 Identities=10% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCCh
Q 017440 233 ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNV 312 (371)
Q Consensus 233 l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~ 312 (371)
++.+|+ .+++|+.++.+.. .+....+++.++.|+..|++|+.+.---.--..++.+.++++|+.....-+.+.+
T Consensus 70 ~~~~r~-~~~~p~ilm~Y~N-----~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 70 LKEVAP-QLSCPIVLFTYYN-----PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred HHHHhc-CCCCCEEEEeccc-----HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 444442 3566766554322 1111356778889999999988765211111346888999999986655245554
Q ss_pred H-HHHHHH----------HhcCceEEEeCChHHHHHHHHhhhc
Q 017440 313 P-EVVYMQ----------RFMGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 313 ~-~~~~l~----------~~~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
+ .+.... -..|+.|.-++.|..+.+.++...+
T Consensus 144 ~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 144 TERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred HHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 3 233321 1268888888888888877766544
No 93
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=85.45 E-value=7.9 Score=34.14 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc-CChHHHHHHHHhCCeEEE
Q 017440 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~Gl~v~~ 305 (371)
.+-.+.++.+++..+++++..-..-. + ......+.+...|++++..+..... ...++++.++++|+++.+
T Consensus 38 ~~g~~~i~~i~~~~~~~~i~~~~~v~-----~----~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 38 SEGMEAVRALREAFPDKIIVADLKTA-----D----AGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HhCHHHHHHHHHHCCCCEEEEEEEec-----c----ccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence 44578888998887888775532211 0 0112245677889999887764311 124688999999999875
Q ss_pred --ecccCChHHHHHHHHhcCceEEEeC
Q 017440 306 --YGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 306 --wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
- +..++.+..+.+ ..|+|.+...
T Consensus 109 ~~~-~~~t~~e~~~~~-~~~~d~v~~~ 133 (202)
T cd04726 109 DLI-GVEDPEKRAKLL-KLGVDIVILH 133 (202)
T ss_pred EEe-CCCCHHHHHHHH-HCCCCEEEEc
Confidence 6 678888877754 6899988763
No 94
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.28 E-value=19 Score=33.58 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=98.0
Q ss_pred ccccchHHHHHHHHhCCCCEEEEEEeee---cCCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCCc
Q 017440 73 SIKENTILSFNAAARHPLDFIEFDVQVT---RDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKP 149 (371)
Q Consensus 73 ~~PENTl~Af~~A~~~Gad~IE~DV~lT---kDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~ 149 (371)
.-.|-|+..++...+.|+|+||+-+=.| .||-.| .+- ...-..+|. -.+-.++.+++++... .. .|
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvI-q~a-~~~AL~~G~-----~~~~~~~~~~~~r~~~-~~---~p 91 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVI-QAA-SLRALAAGV-----TLADVFELVREIREKD-PT---IP 91 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHH-HHH-HHHHHHcCC-----CHHHHHHHHHHHHhcC-CC---CC
Confidence 3478889999999999999999977664 244221 110 011112221 1223345555543100 00 00
Q ss_pred cccccCCCccccccccCCCCccCHHHHHHhcCC-Cc-eEEE-EeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEe
Q 017440 150 MLRKTKDGRIFEWKVEKDTPLCTLQEAFEKVDQ-SV-GFNV-ELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFS 226 (371)
Q Consensus 150 ~~~~~~~g~~~~~~~~~~~~iptL~evL~~~~~-~~-~l~i-EiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~ 226 (371)
.. + ...++.-.=.-++.+++.++. ++ ++.| |+-. +-.+.+.+..+++++. .|.+.
T Consensus 92 ~v--l-------m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~------------ee~~~~~~~~~~~gl~-~I~lv 149 (258)
T PRK13111 92 IV--L-------MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP------------EEAEELRAAAKKHGLD-LIFLV 149 (258)
T ss_pred EE--E-------EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH------------HHHHHHHHHHHHcCCc-EEEEe
Confidence 00 0 000000001135666666651 11 2333 3211 1244566666788766 46666
Q ss_pred cCCH--HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeE
Q 017440 227 SFQP--DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCL 303 (371)
Q Consensus 227 Sf~~--~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v 303 (371)
+.+. +-++.+.+..+++-. ++.. .|..|....... .-.+.++.+++. +.++
T Consensus 150 ap~t~~eri~~i~~~s~gfIY-~vs~-----------------------~GvTG~~~~~~~--~~~~~i~~vk~~~~~pv 203 (258)
T PRK13111 150 APTTTDERLKKIASHASGFVY-YVSR-----------------------AGVTGARSADAA--DLAELVARLKAHTDLPV 203 (258)
T ss_pred CCCCCHHHHHHHHHhCCCcEE-EEeC-----------------------CCCCCcccCCCc--cHHHHHHHHHhcCCCcE
Confidence 6554 667777777666421 1111 111222111100 124577888876 5666
Q ss_pred EEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 304 VSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 304 ~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+=+-+++++++.++. .. +||++.=..
T Consensus 204 ~vGfGI~~~e~v~~~~-~~-ADGviVGSa 230 (258)
T PRK13111 204 AVGFGISTPEQAAAIA-AV-ADGVIVGSA 230 (258)
T ss_pred EEEcccCCHHHHHHHH-Hh-CCEEEEcHH
Confidence 5433588888888875 44 999987543
No 95
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=83.77 E-value=12 Score=34.60 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=88.5
Q ss_pred cCHHHHHHhcCCCceEEEEeccCCcccch-hHHHHHHHHHHHHHHHHhcC------CCCeEEecCCHHHHHHHHHHCCCC
Q 017440 171 CTLQEAFEKVDQSVGFNVELKFDDQLVYT-EEELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQSTY 243 (371)
Q Consensus 171 ptL~evL~~~~~~~~l~iEiK~~~~~~~~-~~~~~~~~~~vl~~l~~~~~------~~~v~i~Sf~~~~l~~l~~~~p~~ 243 (371)
..|.++|+...++..+..|+|..++.... ... .-...+.+..+++|. .+.-+|+. +.+.|+.+++.. .+
T Consensus 33 r~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d--~dp~~ia~~Ye~~GAa~iSVLTd~~~F~G-s~e~L~~v~~~v-~~ 108 (254)
T COG0134 33 RDFYAALKEASGKPAVIAEVKKASPSKGLIRED--FDPVEIAKAYEEGGAAAISVLTDPKYFQG-SFEDLRAVRAAV-DL 108 (254)
T ss_pred ccHHHHHHhcCCCceEEEEeecCCCCCCccccc--CCHHHHHHHHHHhCCeEEEEecCccccCC-CHHHHHHHHHhc-CC
Confidence 56888888876789999999976553210 000 012235556666653 33444443 567787777654 45
Q ss_pred CeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc--CChHHHHHHHHhCCeEEEecccCChHHHHHHHHh
Q 017440 244 PVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRF 321 (371)
Q Consensus 244 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~ 321 (371)
|+. ... +-.. ..-+..+..+|++.|-+-...+- .-.++++.+++.|+.+.+= |+|.+++.+.+ +
T Consensus 109 PvL--~KD-------FiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVE--Vh~~eEl~rAl-~ 174 (254)
T COG0134 109 PVL--RKD-------FIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVE--VHNEEELERAL-K 174 (254)
T ss_pred Cee--ecc-------CCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEE--ECCHHHHHHHH-h
Confidence 653 221 1001 22356678888887654433320 0246899999999999995 88889999987 5
Q ss_pred cCceEEEeCC
Q 017440 322 MGIEGVIVDL 331 (371)
Q Consensus 322 ~GVdgIiTD~ 331 (371)
.|.+-|=.|+
T Consensus 175 ~ga~iIGINn 184 (254)
T COG0134 175 LGAKIIGINN 184 (254)
T ss_pred CCCCEEEEeC
Confidence 8888664443
No 96
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=82.29 E-value=18 Score=34.81 Aligned_cols=60 Identities=8% Similarity=-0.024 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
..+.++.+...++..+..... .|..++.+|++|.+|+. ++-+..+.+++. +.|+|+|+.-
T Consensus 71 ~~~~l~vi~e~~v~~V~~~~G----~P~~~~~lk~~Gi~v~~--~v~s~~~A~~a~-~~GaD~vVaq 130 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAGG----RPDQARALEAIGISTYL--HVPSPGLLKQFL-ENGARKFIFE 130 (320)
T ss_pred hHHHHHHHHhcCCcEEEEcCC----ChHHHHHHHHCCCEEEE--EeCCHHHHHHHH-HcCCCEEEEe
Confidence 345667777788877765432 45568999999999985 577888888876 7999999853
No 97
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=82.01 E-value=4.7 Score=35.26 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=87.5
Q ss_pred CCCccCHHHHHHhcC---CCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHC-CC
Q 017440 167 DTPLCTLQEAFEKVD---QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQ-ST 242 (371)
Q Consensus 167 ~~~iptL~evL~~~~---~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~-p~ 242 (371)
+..|.+|.++.+.++ +.+.+++|+=..-. .. +.-++.+.++...+ =+.|-....++..++.. ..
T Consensus 27 ~g~I~~l~~~v~~~~~~gK~vfVHiDli~Gl~--~D--------~~~i~~L~~~~~~d--GIISTk~~~i~~Ak~~gl~t 94 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGKKVFVHIDLIEGLS--RD--------EAGIEYLKEYGKPD--GIISTKSNLIKRAKKLGLLT 94 (175)
T ss_dssp SEECCCHHHHHHHHHHTT-EEEEECCGEETB---SS--------HHHHHHHHHTT--S--EEEESSHHHHHHHHHTT-EE
T ss_pred cCcHHHHHHHHHHHHHcCCEEEEEehhcCCCC--CC--------HHHHHHHHHcCCCc--EEEeCCHHHHHHHHHcCCEE
Confidence 467889999999886 35677777543211 00 22345556654222 24455778888877652 22
Q ss_pred CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHh
Q 017440 243 YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRF 321 (371)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~ 321 (371)
+...|+.++ .++...++..+..+.+.+-.-... -|++++++++. +.++.+=|.+.+.++...++ +
T Consensus 95 IqRiFliDS----------~al~~~~~~i~~~~PD~vEilPg~---~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al-~ 160 (175)
T PF04309_consen 95 IQRIFLIDS----------SALETGIKQIEQSKPDAVEILPGV---MPKVIKKIREETNIPIIAGGLIRTKEDVEEAL-K 160 (175)
T ss_dssp EEEEE-SSH----------HHHHHHHHHHHHHT-SEEEEESCC---HHHHHCCCCCCCSS-EEEESS--SHHHHHHHC-C
T ss_pred EEEeeeecH----------HHHHHHHHHHhhcCCCEEEEchHH---HHHHHHHHHHhcCCCEEeecccCCHHHHHHHH-H
Confidence 344555543 467888888888888876543222 36677776554 48899999999999998886 7
Q ss_pred cCceEEEeCChHH
Q 017440 322 MGIEGVIVDLVSE 334 (371)
Q Consensus 322 ~GVdgIiTD~p~~ 334 (371)
.|+++|.|-.++.
T Consensus 161 aGa~aVSTS~~~L 173 (175)
T PF04309_consen 161 AGADAVSTSNKEL 173 (175)
T ss_dssp TTCEEEEE--HHH
T ss_pred cCCEEEEcCChHh
Confidence 9999999988765
No 98
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.33 E-value=41 Score=30.34 Aligned_cols=118 Identities=16% Similarity=0.129 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCeEEecCC---HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc
Q 017440 207 LEAILKVVFEHAQGRPIMFSSFQ---PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV 283 (371)
Q Consensus 207 ~~~vl~~l~~~~~~~~v~i~Sf~---~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 283 (371)
+..+.+.+.+.|.. -+-+.--. .+.++.+++.+|+..++. ++- -+ .+..+.+...|++.+..+.
T Consensus 29 a~~i~~al~~~Gi~-~iEitl~~~~~~~~I~~l~~~~p~~~IGA----GTV-------l~-~~~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 29 AVPLAKALVAGGLP-VLEVTLRTPAALEAIRLIAKEVPEALIGA----GTV-------LN-PEQLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHHHHcCCC-EEEEecCCccHHHHHHHHHHHCCCCEEEE----eec-------cC-HHHHHHHHHcCCCEEECCC
Confidence 34455555665543 23343222 334566666666543332 110 01 2335667788999887653
Q ss_pred ccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH---HHHHHhhhcc
Q 017440 284 RAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI---TEAVSDFIKN 345 (371)
Q Consensus 284 ~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l---~~~l~~~~~~ 345 (371)
.++++++.+++.|+.+..= +-++.++.+.. ++|++.|.- +|... ..+++....+
T Consensus 96 ----~~~~vi~~a~~~~i~~iPG--~~TptEi~~a~-~~Ga~~vKl-FPa~~~gg~~~lk~l~~p 152 (212)
T PRK05718 96 ----LTPPLLKAAQEGPIPLIPG--VSTPSELMLGM-ELGLRTFKF-FPAEASGGVKMLKALAGP 152 (212)
T ss_pred ----CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEEE-ccchhccCHHHHHHHhcc
Confidence 3789999999999887742 33566777774 799998887 88653 3666666544
No 99
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.45 E-value=1.8 Score=46.33 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.9
Q ss_pred hHHHHHHHHhCCCCEEEEEEee--ecCCeEEEecCCCc
Q 017440 78 TILSFNAAARHPLDFIEFDVQV--TRDGCPVIFHDNFI 113 (371)
Q Consensus 78 Tl~Af~~A~~~Gad~IE~DV~l--TkDG~lVv~HD~~L 113 (371)
|.+-|++++-.||.+||+|.|= ++|++||+.|..+.
T Consensus 343 SvEmYRQvLLsGcRCVELDcWdgk~~d~EPvITHG~tm 380 (1189)
T KOG1265|consen 343 SVEMYRQVLLSGCRCVELDCWDGKGEDEEPVITHGFTM 380 (1189)
T ss_pred hHHHHHHHHHhcCceEEeeeecCCCCCCCceeecccch
Confidence 7888999999999999999994 67899999999886
No 100
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=80.09 E-value=24 Score=32.09 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHhCCCceEecccccccCChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 271 CLAGGLQGIVSEVRAIFKNPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 271 ~~~~~~~~v~~~~~~~~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
++.++...+.+++.....++++++.+++. +.++.+=|-+++.+++++++ ..|+|+|++-.
T Consensus 144 ae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs 205 (219)
T cd02812 144 AEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVVGN 205 (219)
T ss_pred HHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 45667777777755555789999999886 57777666799999999986 68999998755
No 101
>PRK15452 putative protease; Provisional
Probab=79.55 E-value=74 Score=32.17 Aligned_cols=83 Identities=17% Similarity=0.262 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC
Q 017440 210 ILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN 289 (371)
Q Consensus 210 vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 289 (371)
.++.+.+.+.. .++++ |+..+..+++..|++++-.-+.-.. .=..++++....|+..+++..+. +
T Consensus 81 ~l~~l~~~gvD-gvIV~--d~G~l~~~ke~~p~l~ih~stqlni---------~N~~a~~f~~~lG~~rvvLSrEL---s 145 (443)
T PRK15452 81 DLEPVIAMKPD-ALIMS--DPGLIMMVREHFPEMPIHLSVQANA---------VNWATVKFWQQMGLTRVILSREL---S 145 (443)
T ss_pred HHHHHHhCCCC-EEEEc--CHHHHHHHHHhCCCCeEEEEecccC---------CCHHHHHHHHHCCCcEEEECCcC---C
Confidence 34445555533 45664 6889999999888887765442211 01345677888999988877653 6
Q ss_pred hHHHHHHHHh--C--CeEEEec
Q 017440 290 PGAIKKIKEA--K--LCLVSYG 307 (371)
Q Consensus 290 ~~~v~~~~~~--G--l~v~~wg 307 (371)
-+-|+.+.++ + +.++++|
T Consensus 146 l~EI~~i~~~~~~~elEvfVHG 167 (443)
T PRK15452 146 LEEIEEIRQQCPDMELEVFVHG 167 (443)
T ss_pred HHHHHHHHhhCCCCCEEEEEEc
Confidence 6677777643 3 4778876
No 102
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=78.73 E-value=44 Score=29.10 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCCccCHHHHHHhcC-C--CceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhc-CCCCeEEecCCHHHHHHHHHH-CC
Q 017440 167 DTPLCTLQEAFEKVD-Q--SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHA-QGRPIMFSSFQPDAALLIRKL-QS 241 (371)
Q Consensus 167 ~~~iptL~evL~~~~-~--~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~-~~~~v~i~Sf~~~~l~~l~~~-~p 241 (371)
...|..+.+....++ . .+.+.+|+=..-. .. +++ ++.+.+-. ..+ +++. -..++...++. ..
T Consensus 31 ~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~---~~----e~~---i~fi~~~~~pdG--IIST-k~~~i~~Akk~~~~ 97 (181)
T COG1954 31 TGHILNIKEIVKKLKNRGKTVFIHVDLVEGLS---ND----EVA---IEFIKEVIKPDG--IIST-KSNVIKKAKKLGIL 97 (181)
T ss_pred echhhhHHHHHHHHHhCCcEEEEEeHHhcccC---Cc----hHH---HHHHHHhccCCe--eEEc-cHHHHHHHHHcCCc
Confidence 357889999999987 2 4556666433211 11 111 12222221 222 4444 44555554443 34
Q ss_pred CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHH
Q 017440 242 TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQR 320 (371)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~ 320 (371)
.+...|+.++ .++...++.+...+++.+-.-.. +-|+.++.+.++ +.+|.+=|-+++.+++...+
T Consensus 98 aIqR~FilDS----------~Al~~~~~~i~~~~pD~iEvLPG---v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al- 163 (181)
T COG1954 98 AIQRLFILDS----------IALEKGIKQIEKSEPDFIEVLPG---VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL- 163 (181)
T ss_pred eeeeeeeecH----------HHHHHHHHHHHHcCCCEEEEcCc---ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-
Confidence 5566677654 35788888998888887654332 358888888665 58899988999999999987
Q ss_pred hcCceEEEeCCh
Q 017440 321 FMGIEGVIVDLV 332 (371)
Q Consensus 321 ~~GVdgIiTD~p 332 (371)
..|+-++.|-+-
T Consensus 164 ~aGA~avSTs~~ 175 (181)
T COG1954 164 KAGAVAVSTSNT 175 (181)
T ss_pred HhCcEEEeecch
Confidence 699999988654
No 103
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=78.70 E-value=31 Score=32.07 Aligned_cols=145 Identities=16% Similarity=0.129 Sum_probs=84.0
Q ss_pred CCccCHHHHHHhcCCCceEEEEeccCCcccc--hhHHHHHHHHHHHHHHHHhcCC------CCeEEecCCHHHHHHHHHH
Q 017440 168 TPLCTLQEAFEKVDQSVGFNVELKFDDQLVY--TEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKL 239 (371)
Q Consensus 168 ~~iptL~evL~~~~~~~~l~iEiK~~~~~~~--~~~~~~~~~~~vl~~l~~~~~~------~~v~i~Sf~~~~l~~l~~~ 239 (371)
.+...|.+.|...+++..+.-|+|..++... ... .-...+...+.+.|.. ++-+|.. +.+.|..+++.
T Consensus 32 ~~~~~f~~aL~~~~~~~~vIAEiKraSPs~G~i~~~---~d~~~~a~~y~~~GA~aiSVlTe~~~F~G-s~~dL~~v~~~ 107 (254)
T PF00218_consen 32 PPPRSFKEALRQNEGRISVIAEIKRASPSKGDIRED---FDPAEIAKAYEEAGAAAISVLTEPKFFGG-SLEDLRAVRKA 107 (254)
T ss_dssp S-TTHHHHHHHSHTSS-EEEEEE-SEETTTEESBSS----SHHHHHHHHHHTT-SEEEEE--SCCCHH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHhcCCCCCeEEEEeecCCCCCCccCcc---CCHHHHHHHHHhcCCCEEEEECCCCCCCC-CHHHHHHHHHH
Confidence 4456788888887678999999997554211 000 1133455556666532 2222222 45667777776
Q ss_pred CCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccC--ChHHHHHHHHhCCeEEEecccCChHHHHH
Q 017440 240 QSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK--NPGAIKKIKEAKLCLVSYGELNNVPEVVY 317 (371)
Q Consensus 240 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~ 317 (371)
. ++|+.. . |+-.. ..-+..++..|++.|.+-...+-. -.++++.+++.|+.+.+= |.+.+++.+
T Consensus 108 ~-~~PvL~--K-------DFIid--~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVE--Vh~~~El~~ 173 (254)
T PF00218_consen 108 V-DLPVLR--K-------DFIID--PYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVE--VHNEEELER 173 (254)
T ss_dssp S-SS-EEE--E-------S---S--HHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEE--ESSHHHHHH
T ss_pred h-CCCccc--c-------cCCCC--HHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEE--ECCHHHHHH
Confidence 4 456543 1 11111 122456788999988765544311 146899999999999995 888899988
Q ss_pred HHHhcCceEEEeCC
Q 017440 318 MQRFMGIEGVIVDL 331 (371)
Q Consensus 318 l~~~~GVdgIiTD~ 331 (371)
.+ ..|.+-|-.|+
T Consensus 174 al-~~~a~iiGINn 186 (254)
T PF00218_consen 174 AL-EAGADIIGINN 186 (254)
T ss_dssp HH-HTT-SEEEEES
T ss_pred HH-HcCCCEEEEeC
Confidence 86 68988776665
No 104
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=78.59 E-value=21 Score=31.88 Aligned_cols=117 Identities=18% Similarity=0.084 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcCCCCeEEecCC---HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 208 EAILKVVFEHAQGRPIMFSSFQ---PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 208 ~~vl~~l~~~~~~~~v~i~Sf~---~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
..+.+.+.+-|.. -+-+.--+ .+.++.+++..|++-++.=+- -+. +..+.+...|++.+..+.
T Consensus 23 ~~~~~al~~gGi~-~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV-----------~~~-e~a~~a~~aGA~FivSP~- 88 (196)
T PF01081_consen 23 VPIAEALIEGGIR-AIEITLRTPNALEAIEALRKEFPDLLVGAGTV-----------LTA-EQAEAAIAAGAQFIVSPG- 88 (196)
T ss_dssp HHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTTSEEEEES-------------SH-HHHHHHHHHT-SEEEESS-
T ss_pred HHHHHHHHHCCCC-EEEEecCCccHHHHHHHHHHHCCCCeeEEEec-----------cCH-HHHHHHHHcCCCEEECCC-
Confidence 3444444554533 22333222 345555666677755543110 122 234567778988877653
Q ss_pred cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH---HHHHHhhhcc
Q 017440 285 AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI---TEAVSDFIKN 345 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l---~~~l~~~~~~ 345 (371)
.++++++.++++|+.++.= +-++.|+.... ++|++.|=- +|... .++++....+
T Consensus 89 ---~~~~v~~~~~~~~i~~iPG--~~TptEi~~A~-~~G~~~vK~-FPA~~~GG~~~ik~l~~p 145 (196)
T PF01081_consen 89 ---FDPEVIEYAREYGIPYIPG--VMTPTEIMQAL-EAGADIVKL-FPAGALGGPSYIKALRGP 145 (196)
T ss_dssp -----HHHHHHHHHHTSEEEEE--ESSHHHHHHHH-HTT-SEEEE-TTTTTTTHHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHcCCcccCC--cCCHHHHHHHH-HCCCCEEEE-ecchhcCcHHHHHHHhcc
Confidence 3899999999999998764 44677887775 799995543 55443 3566665544
No 105
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=78.53 E-value=17 Score=33.73 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=59.8
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEE-Eeccc
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV-SYGEL 309 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~-~wgtv 309 (371)
+.++.+++..+++|+.+++.... +....+++.++.+.+.|++++..+....--..++++.++++|+... .- +.
T Consensus 76 ~~v~~ir~~~~~~plv~m~Y~Np-----i~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv-~P 149 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIGLLTYYNL-----IFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLV-AP 149 (256)
T ss_pred HHHHHHHhcCCCCCEEEEEeccH-----HhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEE-CC
Confidence 34555555445677665543321 1112456778888899999877664322112468889999998854 44 45
Q ss_pred CCh-HHHHHHHHh----------cCceEEEeCChHHHHHHHHhhhc
Q 017440 310 NNV-PEVVYMQRF----------MGIEGVIVDLVSEITEAVSDFIK 344 (371)
Q Consensus 310 n~~-~~~~~l~~~----------~GVdgIiTD~p~~l~~~l~~~~~ 344 (371)
+++ +.+..+... .|+.|.-+..+..+.+.+++..+
T Consensus 150 ~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 150 NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHh
Confidence 553 334333211 34445444455556666555443
No 106
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=78.27 E-value=30 Score=31.08 Aligned_cols=117 Identities=18% Similarity=0.204 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCCCeEEecCCHHH---HHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 208 EAILKVVFEHAQGRPIMFSSFQPDA---ALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 208 ~~vl~~l~~~~~~~~v~i~Sf~~~~---l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
..+.+.+.+.|.. -+-+..-++.. ++.+++.+|++.++. ++- -+. +..+.+...|++.+..+.
T Consensus 23 ~~~~~al~~~Gi~-~iEit~~t~~a~~~i~~l~~~~~~~~vGA----GTV-------l~~-~~a~~a~~aGA~FivsP~- 88 (204)
T TIGR01182 23 LPLAKALIEGGLR-VLEVTLRTPVALDAIRLLRKEVPDALIGA----GTV-------LNP-EQLRQAVDAGAQFIVSPG- 88 (204)
T ss_pred HHHHHHHHHcCCC-EEEEeCCCccHHHHHHHHHHHCCCCEEEE----EeC-------CCH-HHHHHHHHcCCCEEECCC-
Confidence 3445555555543 34444444544 445555555433332 110 122 234567788998887653
Q ss_pred cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHH-H--HHHHHhhhcc
Q 017440 285 AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE-I--TEAVSDFIKN 345 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~-l--~~~l~~~~~~ 345 (371)
.++++++.++++|+.+.. | +-++.|+...+ ++|.|.|=- +|.. + ..+++....+
T Consensus 89 ---~~~~v~~~~~~~~i~~iP-G-~~TptEi~~A~-~~Ga~~vKl-FPA~~~GG~~yikal~~p 145 (204)
T TIGR01182 89 ---LTPELAKHAQDHGIPIIP-G-VATPSEIMLAL-ELGITALKL-FPAEVSGGVKMLKALAGP 145 (204)
T ss_pred ---CCHHHHHHHHHcCCcEEC-C-CCCHHHHHHHH-HCCCCEEEE-CCchhcCCHHHHHHHhcc
Confidence 389999999999999887 3 66788888875 799996543 4533 3 3566655443
No 107
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=78.04 E-value=36 Score=30.11 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhCCCceEecccccc-----cCCh--HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAI-----FKNP--GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~--~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
++++++ .+...|++.|..-.... -..| ++++++.+.+.+|.+=|-++++++..+++ ++|+++|+.-
T Consensus 101 t~ee~~-~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al-~~GA~aVVVG 173 (192)
T PF04131_consen 101 TLEEAI-NAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKAL-ELGAHAVVVG 173 (192)
T ss_dssp SHHHHH-HHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHH-HTT-SEEEE-
T ss_pred CHHHHH-HHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHH-hcCCeEEEEC
Confidence 455544 35677877776432110 0112 68999999999999988899999999997 7999999875
No 108
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=77.65 E-value=16 Score=34.04 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHCC---CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccC----------------
Q 017440 228 FQPDAALLIRKLQS---TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK---------------- 288 (371)
Q Consensus 228 f~~~~l~~l~~~~p---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 288 (371)
-|.-++...++..| +.|+..=.... |+. ..+...++..+..|+.||.=....-++
T Consensus 64 aN~iv~em~~eiLp~v~~tPViaGv~at-----DP~-~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~ 137 (268)
T PF09370_consen 64 ANEIVMEMAREILPVVKDTPVIAGVCAT-----DPF-RDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYD 137 (268)
T ss_dssp HHHHHHHHHHHHGGG-SSS-EEEEE-TT------TT---HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HH
T ss_pred HhHHHHHHHHhhhhhccCCCEEEEecCc-----CCC-CcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHH
Confidence 34444555555544 34565544332 111 246677777888888877511110011
Q ss_pred -ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 289 -NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 289 -~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.-++++.+|++|+...+| |-++++..++. +.|+|.|+..-
T Consensus 138 ~EVemi~~A~~~gl~T~~y--vf~~e~A~~M~-~AGaDiiv~H~ 178 (268)
T PF09370_consen 138 REVEMIRKAHEKGLFTTAY--VFNEEQARAMA-EAGADIIVAHM 178 (268)
T ss_dssp HHHHHHHHHHHTT-EE--E--E-SHHHHHHHH-HHT-SEEEEE-
T ss_pred HHHHHHHHHHHCCCeeeee--ecCHHHHHHHH-HcCCCEEEecC
Confidence 126999999999999998 44678888886 79999888654
No 109
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=77.64 E-value=8.5 Score=37.18 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=39.2
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
++.+...++..+...... ..++.++.+|++|+.|+. ++.+..+..+++ +.|+|+|+.-
T Consensus 106 ~~~~~~~~~~~v~~~~G~--p~~~~i~~l~~~gi~v~~--~v~s~~~A~~a~-~~G~D~iv~q 163 (330)
T PF03060_consen 106 LDVALEAKPDVVSFGFGL--PPPEVIERLHAAGIKVIP--QVTSVREARKAA-KAGADAIVAQ 163 (330)
T ss_dssp HHHHHHS--SEEEEESSS--C-HHHHHHHHHTT-EEEE--EESSHHHHHHHH-HTT-SEEEEE
T ss_pred cccccccceEEEEeeccc--chHHHHHHHHHcCCcccc--ccCCHHHHHHhh-hcCCCEEEEe
Confidence 344444566666654432 247899999999998876 688899988886 7999999854
No 110
>PRK08227 autoinducer 2 aldolase; Validated
Probab=77.19 E-value=16 Score=34.10 Aligned_cols=110 Identities=7% Similarity=0.005 Sum_probs=62.9
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc--------cCChHHHHHHHHhCC
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKIKEAKL 301 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~v~~~~~~Gl 301 (371)
...++.......+.++.+-.+..+..+.+.....+...++.|.++|+++|....+.- ..-.+.++++++.|+
T Consensus 62 ~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~ 141 (264)
T PRK08227 62 RGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGM 141 (264)
T ss_pred hhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 555555444555666554444443322222111222235567788998887654321 011257789999999
Q ss_pred eEEEecccC-----C-hHHHH---HHHHhcCceEEEeCChH-HHHHHHH
Q 017440 302 CLVSYGELN-----N-VPEVV---YMQRFMGIEGVIVDLVS-EITEAVS 340 (371)
Q Consensus 302 ~v~~wgtvn-----~-~~~~~---~l~~~~GVdgIiTD~p~-~l~~~l~ 340 (371)
++.+| ... + .+.+. ++-.++|+|-|=|++|. .+.++.+
T Consensus 142 Plla~-~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~~~f~~vv~ 189 (264)
T PRK08227 142 PVMAV-TAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVEEGFERITA 189 (264)
T ss_pred cEEEE-ecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCHHHHHHHHH
Confidence 99888 432 2 22121 22236999999999997 5566655
No 111
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=77.17 E-value=32 Score=33.02 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=65.7
Q ss_pred HHHHHHHHHCC-CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc-------cCChHHHHHHHHh-CC
Q 017440 231 DAALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI-------FKNPGAIKKIKEA-KL 301 (371)
Q Consensus 231 ~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~v~~~~~~-Gl 301 (371)
++++.+++..+ ++|+..-+..+. .+. ....+..+.+...|++.++++.... ..+.+.++.++++ ++
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~---~~~--~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~i 195 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGW---DSG--ERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTI 195 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCC---CCc--hHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCC
Confidence 44555566554 577766544321 110 1134555667778888888765321 1234567777775 58
Q ss_pred eEEEecccCChHHHHHHHHhcCceEEEeCC-----hHHHHHH
Q 017440 302 CLVSYGELNNVPEVVYMQRFMGIEGVIVDL-----VSEITEA 338 (371)
Q Consensus 302 ~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-----p~~l~~~ 338 (371)
+|..-|-+++.+++.+++..-|+|||+.=+ |..+.++
T Consensus 196 PVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 196 PVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVV 237 (312)
T ss_pred cEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence 888888899999999987568999998755 5555544
No 112
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.21 E-value=52 Score=28.86 Aligned_cols=113 Identities=19% Similarity=0.117 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCCCeEEecCCH---HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440 210 ILKVVFEHAQGRPIMFSSFQP---DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 210 vl~~l~~~~~~~~v~i~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 286 (371)
+++.+.+.|.. -+.+..-+. +.++.+++..|++.++--.- -..+.++.+...|+++++....
T Consensus 21 ~~~~l~~~G~~-~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v------------~~~~~~~~a~~~Ga~~i~~p~~-- 85 (190)
T cd00452 21 LAEALIEGGIR-AIEITLRTPGALEAIRALRKEFPEALIGAGTV------------LTPEQADAAIAAGAQFIVSPGL-- 85 (190)
T ss_pred HHHHHHHCCCC-EEEEeCCChhHHHHHHHHHHHCCCCEEEEEeC------------CCHHHHHHHHHcCCCEEEcCCC--
Confidence 34444444533 344544444 34555556555544332110 0123356677889999986532
Q ss_pred cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC-hHHHHHHHHhh
Q 017440 287 FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL-VSEITEAVSDF 342 (371)
Q Consensus 287 ~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-p~~l~~~l~~~ 342 (371)
+++.++..++.|..+.+ .+.+.++..+.+ +.|+|.|..+. +....++++..
T Consensus 86 --~~~~~~~~~~~~~~~i~--gv~t~~e~~~A~-~~Gad~i~~~p~~~~g~~~~~~l 137 (190)
T cd00452 86 --DPEVVKAANRAGIPLLP--GVATPTEIMQAL-ELGADIVKLFPAEAVGPAYIKAL 137 (190)
T ss_pred --CHHHHHHHHHcCCcEEC--CcCCHHHHHHHH-HCCCCEEEEcCCcccCHHHHHHH
Confidence 68899999999988766 255788887875 79999998752 22234444443
No 113
>cd08590 PI-PLCc_Rv2075c_like Catalytic domain of uncharacterized Mycobacterium tuberculosis Rv2075c-like proteins. This subfamily corresponds to the catalytic domain present in uncharacterized Mycobacterium tuberculosis Rv2075c and its homologs. Members in this family are more closely related to the Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1(SaPLC1)-like proteins rather than the typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). In contrast, SaPLC1-like proteins have two Ca2+-chelating amino acid substitutions which convert them to metal-dependent bacterial PI-PLC. Rv2075c and its homologs have the same amino acid substitutions as well, which might suggest they have metal-dependent PI-PLC activity.
Probab=75.72 E-value=22 Score=33.35 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=29.8
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 75 KENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 75 PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
.-|-..++..+++.|+.++|+||+.. ++.+.++|-..
T Consensus 40 ~~nQ~~sI~~QL~~GvR~LdLdv~~~-~~~l~v~Hg~~ 76 (267)
T cd08590 40 DPNQELSITDQLDLGARFLELDVHWT-TGDLRLCHGGD 76 (267)
T ss_pred ccccCcCHHHHHhhCCcEEEEeeeeC-CCCEEEEccCc
Confidence 34556678999999999999999985 46788888644
No 114
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.40 E-value=37 Score=30.38 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc
Q 017440 208 EAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (371)
Q Consensus 208 ~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (371)
..+.+.+.+-|.. -+-+.--++..++.+++...++|-. ++..++- -+. +..+.+...|++.++.+.
T Consensus 19 ~~ia~al~~gGi~-~iEit~~tp~a~~~I~~l~~~~~~~-~vGAGTV-------l~~-e~a~~ai~aGA~FivSP~---- 84 (201)
T PRK06015 19 VPLARALAAGGLP-AIEITLRTPAALDAIRAVAAEVEEA-IVGAGTI-------LNA-KQFEDAAKAGSRFIVSPG---- 84 (201)
T ss_pred HHHHHHHHHCCCC-EEEEeCCCccHHHHHHHHHHHCCCC-EEeeEeC-------cCH-HHHHHHHHcCCCEEECCC----
Confidence 3455555555543 3445444555555554443233322 2222211 122 234667788998887653
Q ss_pred CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChH-HH--HHHHHhhhcc
Q 017440 288 KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS-EI--TEAVSDFIKN 345 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~-~l--~~~l~~~~~~ 345 (371)
.++++++.++++|+.++.= +-++.|+.... ++|.+.|- =+|. .+ ..+++....+
T Consensus 85 ~~~~vi~~a~~~~i~~iPG--~~TptEi~~A~-~~Ga~~vK-~FPa~~~GG~~yikal~~p 141 (201)
T PRK06015 85 TTQELLAAANDSDVPLLPG--AATPSEVMALR-EEGYTVLK-FFPAEQAGGAAFLKALSSP 141 (201)
T ss_pred CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEE-ECCchhhCCHHHHHHHHhh
Confidence 3899999999999998874 55678887774 79999554 3553 43 3666665433
No 115
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.97 E-value=33 Score=30.99 Aligned_cols=57 Identities=23% Similarity=0.118 Sum_probs=45.6
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+.+...|++.++.+. .++++++.++++|+.+..= +.++.++.... +.|+|.|-- +|
T Consensus 81 ~~~a~~aGA~FivsP~----~~~~v~~~~~~~~i~~iPG--~~T~~E~~~A~-~~Gad~vkl-FP 137 (213)
T PRK06552 81 ARLAILAGAQFIVSPS----FNRETAKICNLYQIPYLPG--CMTVTEIVTAL-EAGSEIVKL-FP 137 (213)
T ss_pred HHHHHHcCCCEEECCC----CCHHHHHHHHHcCCCEECC--cCCHHHHHHHH-HcCCCEEEE-CC
Confidence 4667788999887653 3899999999999998874 56778887775 799999887 55
No 116
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=74.58 E-value=46 Score=29.38 Aligned_cols=93 Identities=13% Similarity=0.003 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc-CChHHHHHHHHhCCeEEEe
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~Gl~v~~w 306 (371)
+..+.++.+++..|+..+..=+. ..+. + ...++.+...|++.+..+..... ...++++.++++|+++++-
T Consensus 38 ~g~~~i~~l~~~~~~~~i~~d~k-----~~d~--~--~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 38 EGIEAVKEMKEAFPDRKVLADLK-----TMDA--G--EYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEe-----eccc--h--HHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 34667888887766544432110 0011 1 11245667889998877655311 1257899999999998864
Q ss_pred -cccCCh-HHHHHHHHhcCceEEEeC
Q 017440 307 -GELNNV-PEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 307 -gtvn~~-~~~~~l~~~~GVdgIiTD 330 (371)
.+..+. ++...+. +.|+|.|..+
T Consensus 109 ~~~~~t~~~~~~~~~-~~g~d~v~~~ 133 (206)
T TIGR03128 109 LINVKDKVKRAKELK-ELGADYIGVH 133 (206)
T ss_pred ecCCCChHHHHHHHH-HcCCCEEEEc
Confidence 033333 4555554 6799999875
No 117
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=74.27 E-value=24 Score=30.71 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHhCCCceEecccccccCChHHHHHHHHhCCeEEEe-----cccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440 270 VCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY-----GELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 270 ~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~w-----gtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
.+....+..+.+-.....--++.++.++++|..+++. |.-|+...++++....+.|||+|=++..+..+.+.
T Consensus 18 ~~les~~~~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk~ 94 (181)
T COG1954 18 KALESESQYVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNVIKKAKKL 94 (181)
T ss_pred HHhcCCCeEEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEccHHHHHHHHHc
Confidence 3344455554443333333478899999999999887 22245555555554567999999999998887654
No 118
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=73.51 E-value=34 Score=30.32 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHCCC--CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeEE-
Q 017440 229 QPDAALLIRKLQST--YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCLV- 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~- 304 (371)
+.+..+.+++..+. .+++++... ++.+..+.+...++++|+++... +++.++.+++. |..++
T Consensus 36 ~~~~a~~l~~~~~~~~~~V~v~vn~-----------~~~~i~~ia~~~~~d~Vqlhg~e---~~~~~~~l~~~~~~~~i~ 101 (203)
T cd00405 36 SPEQAREIVAALPPFVKRVGVFVNE-----------DLEEILEIAEELGLDVVQLHGDE---SPEYCAQLRARLGLPVIK 101 (203)
T ss_pred CHHHHHHHHHhCCCCCcEEEEEeCC-----------CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhcCCcEEE
Confidence 34555566665555 455555432 46677788889999999987653 56788888774 55543
Q ss_pred EecccCChHHHH--HHHHhcCceEEEeCChH
Q 017440 305 SYGELNNVPEVV--YMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 305 ~wgtvn~~~~~~--~l~~~~GVdgIiTD~p~ 333 (371)
+- -+.+..... +. ...|+|+++.|.+.
T Consensus 102 ~i-~~~~~~~~~~~~~-~~~~aD~il~dt~~ 130 (203)
T cd00405 102 AI-RVKDEEDLEKAAA-YAGEVDAILLDSKS 130 (203)
T ss_pred EE-ecCChhhHHHhhh-ccccCCEEEEcCCC
Confidence 22 233333322 22 24799999988753
No 119
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=72.84 E-value=38 Score=29.82 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHCCCCCeEE-EcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEe
Q 017440 228 FQPDAALLIRKLQSTYPVFF-LTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
+..+.++.+++. ++.++.. ++.. ...+.++.+...|++++.++..........++.+++.|+.+..-
T Consensus 43 ~~~~~v~~i~~~-~~~~v~v~lm~~-----------~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~ 110 (210)
T TIGR01163 43 FGPPVLEALRKY-TDLPIDVHLMVE-----------NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIV 110 (210)
T ss_pred cCHHHHHHHHhc-CCCcEEEEeeeC-----------CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEE
Confidence 556677777753 4445421 2211 23445677778899997766543212346778888899775432
Q ss_pred cccCChHHHHHHHHhcCceEEEe
Q 017440 307 GELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 307 gtvn~~~~~~~l~~~~GVdgIiT 329 (371)
.+.++..+..+.+ ..++|+|..
T Consensus 111 ~~~~t~~e~~~~~-~~~~d~i~~ 132 (210)
T TIGR01163 111 LNPATPLEFLEYV-LPDVDLVLL 132 (210)
T ss_pred ECCCCCHHHHHHH-HhhCCEEEE
Confidence 1444444432322 357787755
No 120
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=72.25 E-value=20 Score=32.38 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=41.8
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.|...+++|||+..+.. ......++...++.|.+- +++.+++.+.. .+|+|.|..
T Consensus 75 dlA~~~~AdGVHlGq~D~--~~~~ar~~~~~~~iIG~S--~h~~eea~~A~-~~g~DYv~~ 130 (211)
T COG0352 75 DLALAVGADGVHLGQDDM--PLAEARELLGPGLIIGLS--THDLEEALEAE-ELGADYVGL 130 (211)
T ss_pred HHHHhCCCCEEEcCCccc--chHHHHHhcCCCCEEEee--cCCHHHHHHHH-hcCCCEEEE
Confidence 567788999999876642 556666667666777664 66888888885 689999974
No 121
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.03 E-value=1e+02 Score=30.07 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-------H----HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-------D----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-------~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
..+..+++.-++. ..+++++.... + ++..+.+..+.+|+++=.+-.. +++ .+..|..
T Consensus 29 e~~~avi~AAee~--~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~~e-~i~~ai~ 96 (347)
T PRK09196 29 EQVQAIMEAADET--DSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDHGN---------SPA-TCQRAIQ 96 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CHH-HHHHHHH
Confidence 3456666655554 34566665221 1 2333333444578877655431 233 3556777
Q ss_pred CCCceEecccccc-------------cCChHHHHHHHHhCCeE
Q 017440 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 274 ~~~~~v~~~~~~~-------------~~~~~~v~~~~~~Gl~v 303 (371)
.|+++|..+.+.+ ..|.+.++.+|..|+.|
T Consensus 97 ~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~V 139 (347)
T PRK09196 97 LGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSV 139 (347)
T ss_pred cCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8998887765532 34678999999999876
No 122
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=71.00 E-value=65 Score=29.44 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=58.4
Q ss_pred HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc--cCChHHHHHHHHhCCeEEEeccc
Q 017440 232 AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--FKNPGAIKKIKEAKLCLVSYGEL 309 (371)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~v~~~~~~Gl~v~~wgtv 309 (371)
.++.+++. ++|+..-+..+.. ....+..+.+...|++++++..... ..+-+.++.++ .+++|..-|-+
T Consensus 131 iv~avr~~--~~pVsvKir~g~~-------~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI 200 (233)
T cd02911 131 FIKALKET--GVPVSVKIRAGVD-------VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSV 200 (233)
T ss_pred HHHHHHhc--CCCEEEEEcCCcC-------cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCc
Confidence 34444442 5677665543210 1234455667788999888764321 22345666665 57888877789
Q ss_pred CChHHHHHHHHhcCceEEEeCCh
Q 017440 310 NNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 310 n~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+.+++.+++ ..|+|+|+.-+.
T Consensus 201 ~s~eda~~~l-~~GaD~VmiGR~ 222 (233)
T cd02911 201 TTIESAKEMF-SYGADMVSVARA 222 (233)
T ss_pred CCHHHHHHHH-HcCCCEEEEcCC
Confidence 9999999997 589999998765
No 123
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=70.98 E-value=62 Score=30.68 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc-
Q 017440 209 AILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF- 287 (371)
Q Consensus 209 ~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 287 (371)
.+.+...+.+.. ..++|......+.+++..+ -|.+.-..... + .....+.++.+...+++.+.++.....
T Consensus 85 ~la~aa~~~g~~--~~~~~~~~~~~~~i~~~~~-~~~~~ql~~~~----~--~~~~~~~i~~~~~~g~~~i~l~~~~p~~ 155 (299)
T cd02809 85 ATARAAAAAGIP--FTLSTVSTTSLEEVAAAAP-GPRWFQLYVPR----D--REITEDLLRRAEAAGYKALVLTVDTPVL 155 (299)
T ss_pred HHHHHHHHcCCC--EEecCCCcCCHHHHHHhcC-CCeEEEEeecC----C--HHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 444445555532 3455544445556666555 34333221110 1 123455667777788887776554320
Q ss_pred ---CChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 288 ---KNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 288 ---~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
...+.+++++++ +++|.+= .+.+.+++..+. +.|+|+|+..
T Consensus 156 ~~~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~-~~G~d~I~v~ 200 (299)
T cd02809 156 GRRLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV-DAGADGIVVS 200 (299)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH-HCCCCEEEEc
Confidence 113788999887 7888887 577788887775 7999999763
No 124
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=70.96 E-value=40 Score=30.25 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHhCCCceEeccc-cc--ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 269 KVCLAGGLQGIVSEV-RA--IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~-~~--~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
..++..|+..+++.. +. ...++++++.+++. ++++.+=|-+.+.+++++++ +.|+|+|++
T Consensus 141 ~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVV 204 (205)
T TIGR01769 141 LAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVT 204 (205)
T ss_pred HHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEe
Confidence 345567888777665 21 23678999999877 56666554699999998885 689999985
No 125
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=70.86 E-value=66 Score=29.73 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred ccCHHHHHHhcC------CCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeE-EecCCHHHHHHHHHHCCC
Q 017440 170 LCTLQEAFEKVD------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIM-FSSFQPDAALLIRKLQST 242 (371)
Q Consensus 170 iptL~evL~~~~------~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~-i~Sf~~~~l~~l~~~~p~ 242 (371)
--|-+|++..+. ..-++-+|+=.++..-.+ +....+++.-.+++ -|+. ++ +++-|+...+++...-+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llp--d~~~tv~aa~~L~~-~Gf~--vlpyc~dd~~~ar~l~~~G~~ 146 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLP--DPIETLKAAEILVK-EGFT--VLPYCTDDPVLAKRLEDAGCA 146 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCcccccc--CHHHHHHHHHHHHH-CCCE--EEEEeCCCHHHHHHHHHcCCC
Confidence 345667766654 345788888875432221 11123333322222 2332 55 788888888888876443
Q ss_pred CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHh
Q 017440 243 YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRF 321 (371)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~ 321 (371)
+- . .. ++ -.| .+. -..++++++.+++. +.+|++=|-+.++++..+.+ +
T Consensus 147 ~v----m-Pl---------g~---------pIG-sg~------Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-e 195 (248)
T cd04728 147 AV----M-PL---------GS---------PIG-SGQ------GLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-E 195 (248)
T ss_pred Ee----C-CC---------Cc---------CCC-CCC------CCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-H
Confidence 21 1 00 00 011 000 12368889988885 68888887789999998886 7
Q ss_pred cCceEEEeCC-------hHHHHHHHH
Q 017440 322 MGIEGVIVDL-------VSEITEAVS 340 (371)
Q Consensus 322 ~GVdgIiTD~-------p~~l~~~l~ 340 (371)
+|+||+..+. |..+.+...
T Consensus 196 lGAdgVlV~SAIt~a~dP~~ma~af~ 221 (248)
T cd04728 196 LGADAVLLNTAIAKAKDPVAMARAFK 221 (248)
T ss_pred cCCCEEEEChHhcCCCCHHHHHHHHH
Confidence 9999997754 555554443
No 126
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=70.08 E-value=12 Score=36.43 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=35.5
Q ss_pred hHHHHHHHHhCCeEEEecccCC-----h-H----HHHHHHHhcCceEEEeCChHHHHHHHHhh
Q 017440 290 PGAIKKIKEAKLCLVSYGELNN-----V-P----EVVYMQRFMGIEGVIVDLVSEITEAVSDF 342 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~-----~-~----~~~~l~~~~GVdgIiTD~p~~l~~~l~~~ 342 (371)
.+.++.+|++|.++++ ++|. . + .+..+ .++|||+||..+|..+.-+.+..
T Consensus 52 ~e~i~~ah~~gkk~~V--~~N~~~~~~~~~~~~~~l~~l-~e~GvDaviv~Dpg~i~l~~e~~ 111 (347)
T COG0826 52 AEAVELAHSAGKKVYV--AVNTLLHNDELETLERYLDRL-VELGVDAVIVADPGLIMLARERG 111 (347)
T ss_pred HHHHHHHHHcCCeEEE--EeccccccchhhHHHHHHHHH-HHcCCCEEEEcCHHHHHHHHHhC
Confidence 3688999999998887 3442 1 1 12233 47999999999999887665444
No 127
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.52 E-value=39 Score=31.03 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChH-HHHHHH
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVP-EVVYMQ 319 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~-~~~~l~ 319 (371)
+...++.+...|++++..+.-..--..++++.++++|+.....-+.+++. .++.+.
T Consensus 93 ~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~ 149 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIA 149 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Confidence 45667777788888777632111012467888888888765432444433 344443
No 128
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=68.71 E-value=23 Score=31.85 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
.+++.+.+.|..|.+=|-.|+++.+++.+ +.|+++|+.-
T Consensus 171 ~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVG 209 (229)
T COG3010 171 QLVKQLSDAGCRVIAEGRYNTPEQAKKAI-EIGADAVVVG 209 (229)
T ss_pred HHHHHHHhCCCeEEeeCCCCCHHHHHHHH-HhCCeEEEEC
Confidence 68999999999999999999999999886 7999999764
No 129
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.46 E-value=27 Score=33.39 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
..+.++.+...++..|...... ..++++++|++|..|++ ++.+.++..++. +.|+|+|+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~---p~~~i~~lk~~g~~v~~--~v~s~~~a~~a~-~~GaD~Ivv 135 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGN---PGKYIPRLKENGVKVIP--VVASVALAKRME-KAGADAVIA 135 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCC---cHHHHHHHHHcCCEEEE--EcCCHHHHHHHH-HcCCCEEEE
Confidence 4555666777888877764322 34699999999998875 577778887775 799999986
No 130
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=68.30 E-value=89 Score=27.95 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=77.2
Q ss_pred HHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcc
Q 017440 176 AFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQT 255 (371)
Q Consensus 176 vL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~ 255 (371)
+++.+++++.+....-...+.. .. .....+.+...+.|.. .++--+.+.++.+++. .++|+..++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~----~~i~~~a~~~~~~G~~---~~~~~~~~~~~~i~~~-~~iPil~~~~~~~~~ 73 (219)
T cd04729 3 LLEQLKGGLIVSCQALPGEPLH-SP----EIMAAMALAAVQGGAV---GIRANGVEDIRAIRAR-VDLPIIGLIKRDYPD 73 (219)
T ss_pred HHHHhcCCeEEEccCCCCCCcC-cH----HHHHHHHHHHHHCCCe---EEEcCCHHHHHHHHHh-CCCCEEEEEecCCCC
Confidence 3455555555555443211111 11 2234444444555543 2333456778888875 678886433211100
Q ss_pred cCCCCcccHHHHHHHHHhCCCceEecccccc-----cCChHHHHHHHHhC-CeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 256 CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI-----FKNPGAIKKIKEAK-LCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~v~~~~~~G-l~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
.+...+...+.++.+...|++.+.+..... ....++++.+++.| +.+.+ .+.+.+++.... +.|+|.|.+
T Consensus 74 -~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~-~~G~d~i~~ 149 (219)
T cd04729 74 -SEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA-KLGFDIIGT 149 (219)
T ss_pred -CCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH-HcCCCEEEc
Confidence 000001112245777888998887653321 02357899999999 66554 477778887775 799999865
Q ss_pred C
Q 017440 330 D 330 (371)
Q Consensus 330 D 330 (371)
.
T Consensus 150 ~ 150 (219)
T cd04729 150 T 150 (219)
T ss_pred c
Confidence 3
No 131
>PRK00208 thiG thiazole synthase; Reviewed
Probab=67.76 E-value=86 Score=29.01 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred ccCHHHHHHhcC------CCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeE-EecCCHHHHHHHHHHCCC
Q 017440 170 LCTLQEAFEKVD------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIM-FSSFQPDAALLIRKLQST 242 (371)
Q Consensus 170 iptL~evL~~~~------~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~-i~Sf~~~~l~~l~~~~p~ 242 (371)
--|-+|++..+. ..-++-+|+=.++...++ ++...+++.-.+++ -|+. ++ +++-|+...+++...-+.
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llp--d~~~tv~aa~~L~~-~Gf~--vlpyc~~d~~~ak~l~~~G~~ 146 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLP--DPIETLKAAEILVK-EGFV--VLPYCTDDPVLAKRLEEAGCA 146 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCc--CHHHHHHHHHHHHH-CCCE--EEEEeCCCHHHHHHHHHcCCC
Confidence 446677766654 345788888775443222 11233333322322 2332 56 788888888888877444
Q ss_pred CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHh
Q 017440 243 YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRF 321 (371)
Q Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~ 321 (371)
+- . .. + .-.| .+. -..++++++.+.+. +.+|.+=+-+.++++..+.+ +
T Consensus 147 ~v----m-Pl---------g---------~pIG-sg~------gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-e 195 (250)
T PRK00208 147 AV----M-PL---------G---------APIG-SGL------GLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-E 195 (250)
T ss_pred Ee----C-CC---------C---------cCCC-CCC------CCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-H
Confidence 21 1 00 0 0011 000 12368888888885 78888887789999999986 7
Q ss_pred cCceEEEeCC-------hHHHHHHHHh
Q 017440 322 MGIEGVIVDL-------VSEITEAVSD 341 (371)
Q Consensus 322 ~GVdgIiTD~-------p~~l~~~l~~ 341 (371)
+|+|||..+. |..+.+....
T Consensus 196 lGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 196 LGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred cCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 9999997654 6665554433
No 132
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=66.70 E-value=73 Score=29.44 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
-..++..+|+.|+.|.+.| |.+.+++..+ +++|||.+.=.+
T Consensus 195 v~~iv~la~~l~~~vvaEG-VEt~~ql~~L-~~~G~~~~QGyl 235 (256)
T COG2200 195 VRAIVALAHKLGLTVVAEG-VETEEQLDLL-RELGCDYLQGYL 235 (256)
T ss_pred HHHHHHHHHHCCCEEEEee-cCCHHHHHHH-HHcCCCeEeecc
Confidence 4578999999999999995 9999988777 489999776554
No 133
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=66.66 E-value=39 Score=35.46 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeEE-
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCLV- 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v~- 304 (371)
.|+.|+.+|+..|+.++..+..+... .|.....+-+...++.+...|++.+-.... ..-.-...++.+++.|..+.
T Consensus 62 pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~ 141 (596)
T PRK14042 62 PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQG 141 (596)
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEE
Confidence 58899999999999999888765432 122221123455778888889887654321 11112357899999998753
Q ss_pred --EecccC---ChHH---HHHHHHhcCceEEEeC------ChHHHHHHHHhh
Q 017440 305 --SYGELN---NVPE---VVYMQRFMGIEGVIVD------LVSEITEAVSDF 342 (371)
Q Consensus 305 --~wgtvn---~~~~---~~~l~~~~GVdgIiTD------~p~~l~~~l~~~ 342 (371)
+| |.. +.+. +.+.+.++|+|.|.-= .|..+.++++..
T Consensus 142 ~i~y-t~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 142 AICY-TTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred EEEe-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHH
Confidence 46 543 2222 2222346899988543 366666665554
No 134
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=66.65 E-value=25 Score=32.46 Aligned_cols=48 Identities=8% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEe------------CChHHHHHHHHh
Q 017440 291 GAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIV------------DLVSEITEAVSD 341 (371)
Q Consensus 291 ~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT------------D~p~~l~~~l~~ 341 (371)
+.++.++.. |+.|++| +.+|....+++. ++|++.|++ | |+.+..+.+.
T Consensus 111 ~tv~aa~~L~~~Gf~vlpy-c~dd~~~ar~l~-~~G~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~ 173 (248)
T cd04728 111 ETLKAAEILVKEGFTVLPY-CTDDPVLAKRLE-DAGCAAVMPLGSPIGSGQGLLN-PYNLRIIIER 173 (248)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEeCCCCcCCCCCCCCCC-HHHHHHHHHh
Confidence 577777777 9999999 899999998885 799999988 5 6666655543
No 135
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=66.39 E-value=69 Score=30.87 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHHHHhCCCceEecccccc--cCChHHHHHHHHhC--CeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 268 IKVCLAGGLQGIVSEVRAI--FKNPGAIKKIKEAK--LCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~--~~~~~~v~~~~~~G--l~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
++.+.+.|++.+.++...- ....+.++.+++++ +.|.+. ++.+.+.+..+. +.|+|+|..
T Consensus 99 ~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G-~v~t~~~A~~l~-~aGaD~I~v 162 (325)
T cd00381 99 AEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAG-NVVTAEAARDLI-DAGADGVKV 162 (325)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEEC-CCCCHHHHHHHH-hcCCCEEEE
Confidence 3444456888776543221 01246788999987 778776 899999988886 799999974
No 136
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=65.52 E-value=90 Score=30.24 Aligned_cols=68 Identities=13% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe--EEEec-ccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC--LVSYG-ELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~--v~~wg-tvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
...++.+...|+ ++.+ .+..-+..+++.|.. ..+++ ...+.+++..++ +.|+..++.|..+++..+.+
T Consensus 38 ~~v~~~l~~~G~-g~~v------aS~~E~~~~~~~G~~~~~i~~~~~~k~~~~l~~a~-~~gi~~~~~ds~~el~~l~~ 108 (362)
T cd00622 38 PAVLRTLAALGA-GFDC------ASKGEIELVLGLGVSPERIIFANPCKSISDIRYAA-ELGVRLFTFDSEDELEKIAK 108 (362)
T ss_pred HHHHHHHHHcCC-CeEe------cCHHHHHHHHHcCCCcceEEEcCCCCCHHHHHHHH-HcCCCEEEECCHHHHHHHHH
Confidence 444555555565 3322 255566777777765 44441 244666776665 67887677788888866644
No 137
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=65.24 E-value=59 Score=29.48 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEE-----eC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVI-----VD 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi-----TD 330 (371)
+.+-++.+...|++.+|.+.- .+...+..++.+++. .+.+-++--+.+++.+...+.+.|+|.|+ ++
T Consensus 14 l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~ 93 (220)
T PRK08883 14 LGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE 93 (220)
T ss_pred HHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcc
Confidence 555666777778888776531 223468899999986 45544443367787776655678999775 56
Q ss_pred ChHHHHHHHHhh
Q 017440 331 LVSEITEAVSDF 342 (371)
Q Consensus 331 ~p~~l~~~l~~~ 342 (371)
++..+.+.+++.
T Consensus 94 ~~~~~l~~ik~~ 105 (220)
T PRK08883 94 HVDRTLQLIKEH 105 (220)
T ss_pred cHHHHHHHHHHc
Confidence 666666666665
No 138
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.99 E-value=1.1e+02 Score=28.76 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=35.6
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC-----ChHHHHHHHHhh
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD-----LVSEITEAVSDF 342 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD-----~p~~l~~~l~~~ 342 (371)
+.+..+++. ++.|..=|-+.+.+++.+++ ..|+|+|..= .|....++.+..
T Consensus 221 ~~i~~i~~~~~ipii~~GGI~~~~da~~~l-~~GAd~V~igra~l~~p~~~~~i~~~l 277 (296)
T cd04740 221 RMVYQVYKAVEIPIIGVGGIASGEDALEFL-MAGASAVQVGTANFVDPEAFKEIIEGL 277 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEchhhhcChHHHHHHHHHH
Confidence 566666664 68887776789999999987 6999988643 455555554443
No 139
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=64.41 E-value=63 Score=29.39 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=53.4
Q ss_pred cHHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEE-----e
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVI-----V 329 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi-----T 329 (371)
.+.+-++.+...|++.+|.+.- .+...+..++.+++. .+.+-++--+.+++.+...+.+.|+|.|+ |
T Consensus 17 ~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~ 96 (223)
T PRK08745 17 RLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEAS 96 (223)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCc
Confidence 3556677777888888876631 223468899999986 34443332366777766555578999876 5
Q ss_pred CChHHHHHHHHhh
Q 017440 330 DLVSEITEAVSDF 342 (371)
Q Consensus 330 D~p~~l~~~l~~~ 342 (371)
+++..+.+.+++.
T Consensus 97 ~~~~~~l~~Ir~~ 109 (223)
T PRK08745 97 RHVHRTIQLIKSH 109 (223)
T ss_pred ccHHHHHHHHHHC
Confidence 6676776776665
No 140
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.19 E-value=1.1e+02 Score=27.71 Aligned_cols=69 Identities=19% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH--HHHHHhhhc
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI--TEAVSDFIK 344 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l--~~~l~~~~~ 344 (371)
.+.+...|++.++.+. .++++++.++++|+.+..= +-++.|+.... ++|++.|-- +|... ..+++....
T Consensus 84 a~~a~~aGA~FiVsP~----~~~~v~~~~~~~~i~~iPG--~~TpsEi~~A~-~~Ga~~vKl-FPA~~~G~~~ikal~~ 154 (222)
T PRK07114 84 AALYIQLGANFIVTPL----FNPDIAKVCNRRKVPYSPG--CGSLSEIGYAE-ELGCEIVKL-FPGSVYGPGFVKAIKG 154 (222)
T ss_pred HHHHHHcCCCEEECCC----CCHHHHHHHHHcCCCEeCC--CCCHHHHHHHH-HCCCCEEEE-CcccccCHHHHHHHhc
Confidence 4567788999887653 3899999999999998874 55788887875 799986533 44322 345555443
No 141
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=62.88 E-value=1.3e+02 Score=28.61 Aligned_cols=106 Identities=13% Similarity=0.175 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCCCeEEecCC--HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc--
Q 017440 209 AILKVVFEHAQGRPIMFSSFQ--PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR-- 284 (371)
Q Consensus 209 ~vl~~l~~~~~~~~v~i~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 284 (371)
..++.+.+++. +++..+|. .+.++++++. ++.++..+ .+.+.+ ..+.+.|+++|.+...
T Consensus 78 ~~~~~~~~~~v--~~v~~~~g~p~~~i~~lk~~--g~~v~~~v------------~s~~~a-~~a~~~GaD~Ivv~g~ea 140 (307)
T TIGR03151 78 ELVDLVIEEKV--PVVTTGAGNPGKYIPRLKEN--GVKVIPVV------------ASVALA-KRMEKAGADAVIAEGMES 140 (307)
T ss_pred HHHHHHHhCCC--CEEEEcCCCcHHHHHHHHHc--CCEEEEEc------------CCHHHH-HHHHHcCCCEEEEECccc
Confidence 34444444432 34444443 2356666654 45444332 133333 4456778888875321
Q ss_pred ----cccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 285 ----AIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 285 ----~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
....+-.++..+.++ +++|++-|-+.+..++..++ .+|+|||+....
T Consensus 141 gGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt~ 192 (307)
T TIGR03151 141 GGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTR 192 (307)
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecchH
Confidence 111234566676665 68899988899988888887 599999987653
No 142
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=62.36 E-value=1.6e+02 Score=28.75 Aligned_cols=87 Identities=9% Similarity=0.196 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-----------HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-----------DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
..+..+++.-++. ..+|+++.... .++..+.+..+.+|+++=.+-.. ++ +.+..|..
T Consensus 29 e~~~avi~AAEe~--~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDHg~---------~~-e~i~~Ai~ 96 (347)
T PRK13399 29 EQILAIMEAAEAT--DSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDHGN---------SP-ATCQSAIR 96 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCCCC---------CH-HHHHHHHh
Confidence 3456666655554 45677665321 12333334444578887655431 23 34566777
Q ss_pred CCCceEecccccc-------------cCChHHHHHHHHhCCeE
Q 017440 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 274 ~~~~~v~~~~~~~-------------~~~~~~v~~~~~~Gl~v 303 (371)
.|+++|..+.+.+ ..|.+.++.+|..|+.|
T Consensus 97 ~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsV 139 (347)
T PRK13399 97 SGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSV 139 (347)
T ss_pred cCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8998888775532 24678999999999866
No 143
>PRK06852 aldolase; Validated
Probab=62.13 E-value=61 Score=31.00 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccC----CCCcccHHHHHHHHHhCC------Cce
Q 017440 209 AILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCT----DVRRSSLDEAIKVCLAGG------LQG 278 (371)
Q Consensus 209 ~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~ 278 (371)
.+++.+.+.+.. .++. ....++......+++|+.+-.+..+..+. +... .+...++.|.++| +++
T Consensus 63 ~~i~~~~~~g~d--av~~--~~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~-~l~~sVeeAvrlG~~~~~~AdA 137 (304)
T PRK06852 63 HLFRIASKAKIG--VFAT--QLGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLS-RQLLDVEQVVEFKENSGLNILG 137 (304)
T ss_pred HHHHHHHhcCCC--EEEe--CHHHHHhhccccCCCcEEEEECCCCCcCCcccCCccc-cceecHHHHHhcCCccCCCceE
Confidence 344555554432 3333 25666665555667776554444432222 1111 1111234444555 667
Q ss_pred Eecccccc--------cCChHHHHHHHHhCCeEEEecc-----c-C--ChHHHH---HHHHhcCceEEEeCCh-------
Q 017440 279 IVSEVRAI--------FKNPGAIKKIKEAKLCLVSYGE-----L-N--NVPEVV---YMQRFMGIEGVIVDLV------- 332 (371)
Q Consensus 279 v~~~~~~~--------~~~~~~v~~~~~~Gl~v~~wgt-----v-n--~~~~~~---~l~~~~GVdgIiTD~p------- 332 (371)
|....+.- -.-.++++++++.|+.+.+|-. + | +++.+. ++..++|+|.|=|++|
T Consensus 138 V~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~ 217 (304)
T PRK06852 138 VGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANP 217 (304)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCC
Confidence 66543321 0112577899999999988721 1 1 122222 2334699999999998
Q ss_pred -HHHHHHHHh
Q 017440 333 -SEITEAVSD 341 (371)
Q Consensus 333 -~~l~~~l~~ 341 (371)
+.+.++...
T Consensus 218 ~e~f~~vv~~ 227 (304)
T PRK06852 218 AELFKEAVLA 227 (304)
T ss_pred HHHHHHHHHh
Confidence 567776654
No 144
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=61.86 E-value=1.2e+02 Score=27.14 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=45.4
Q ss_pred HHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 267 AIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
-++.+...|+++++.... ++++++.++..|..+..= +.++.+..+.. +.|+|.|.- +|
T Consensus 75 ~~~~a~~aGA~fivsp~~----~~~v~~~~~~~~~~~~~G--~~t~~E~~~A~-~~Gad~vk~-Fp 132 (206)
T PRK09140 75 QVDRLADAGGRLIVTPNT----DPEVIRRAVALGMVVMPG--VATPTEAFAAL-RAGAQALKL-FP 132 (206)
T ss_pred HHHHHHHcCCCEEECCCC----CHHHHHHHHHCCCcEEcc--cCCHHHHHHHH-HcCCCEEEE-CC
Confidence 356788899999987643 789999999999887764 66777877775 799999875 55
No 145
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=61.47 E-value=59 Score=34.18 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeE-
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCL- 303 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v- 303 (371)
-.++.++.+++..|+.++..+..+... .|.....+-+...++.+.+.|++.+...... .-.-...++.++++|+.+
T Consensus 62 ~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 62 DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEE
Confidence 458899999999999998776654221 1111111234556778888898877654221 101135789999999974
Q ss_pred --EEecccCC---hHHH---HHHHHhcCceEEE-eC-----ChHHHHHHHHhh
Q 017440 304 --VSYGELNN---VPEV---VYMQRFMGIEGVI-VD-----LVSEITEAVSDF 342 (371)
Q Consensus 304 --~~wgtvn~---~~~~---~~l~~~~GVdgIi-TD-----~p~~l~~~l~~~ 342 (371)
.+| |... .+.+ .+.+.++|+|.|. .| .|..+.++++..
T Consensus 142 ~~i~y-t~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 142 GTLSY-TTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred EEEEE-eeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 456 4432 2222 2223468999884 34 377776666554
No 146
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.06 E-value=64 Score=32.81 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeE-
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCL- 303 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v- 303 (371)
-.|+.|+.+++..|+.++..+..+... .|.....+-....++.+...|++.+-.... ..-.-...++.+++.|..+
T Consensus 70 dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~ 149 (468)
T PRK12581 70 DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQ 149 (468)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEE
Confidence 358899999999999999877764321 111111122445678888889887654321 1111246789999999874
Q ss_pred --EEecccCChH------HHHHHHHhcCceEEEe-C-----ChHHHHHHHHhh
Q 017440 304 --VSYGELNNVP------EVVYMQRFMGIEGVIV-D-----LVSEITEAVSDF 342 (371)
Q Consensus 304 --~~wgtvn~~~------~~~~l~~~~GVdgIiT-D-----~p~~l~~~l~~~ 342 (371)
.+| |.+... ++.+.+.++|+|.|.- | .|..+.++++..
T Consensus 150 ~~i~y-t~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 150 LCIAY-TTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred EEEEE-EeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 355 543311 2222224699998854 3 377777766655
No 147
>PLN02334 ribulose-phosphate 3-epimerase
Probab=60.84 E-value=1.1e+02 Score=27.68 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHHHCCCCC-eEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeE
Q 017440 227 SFQPDAALLIRKLQSTYP-VFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v 303 (371)
+|.++.++.+++. ++.+ -..+.- ....+.++.+...|++++.++.. ..-...+.++.+++.|+.+
T Consensus 51 ~~g~~~~~~l~~~-~~~~~~vhlmv-----------~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~i 118 (229)
T PLN02334 51 TIGPPVVKALRKH-TDAPLDCHLMV-----------TNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKA 118 (229)
T ss_pred ccCHHHHHHHHhc-CCCcEEEEecc-----------CCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeE
Confidence 3566778888876 4444 222221 11234456677889999955544 1112347888999999988
Q ss_pred EEeccc-CChHH-HHHHHHhcC-ceEE
Q 017440 304 VSYGEL-NNVPE-VVYMQRFMG-IEGV 327 (371)
Q Consensus 304 ~~wgtv-n~~~~-~~~l~~~~G-VdgI 327 (371)
..- +- +++.+ ...++ ..| +|.|
T Consensus 119 Gls-~~~~t~~~~~~~~~-~~~~~Dyi 143 (229)
T PLN02334 119 GVV-LNPGTPVEAVEPVV-EKGLVDMV 143 (229)
T ss_pred EEE-ECCCCCHHHHHHHH-hccCCCEE
Confidence 765 32 24344 44443 343 8876
No 148
>PRK15452 putative protease; Provisional
Probab=60.80 E-value=50 Score=33.34 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=45.0
Q ss_pred HHHHHhCCCceEeccccccc-------CC----hHHHHHHHHhCCeEEEecccC---ChHHHHH------HHHhcCceEE
Q 017440 268 IKVCLAGGLQGIVSEVRAIF-------KN----PGAIKKIKEAKLCLVSYGELN---NVPEVVY------MQRFMGIEGV 327 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~-------~~----~~~v~~~~~~Gl~v~~wgtvn---~~~~~~~------l~~~~GVdgI 327 (371)
++.|...|++.|.+....+- .+ .+.++.+|++|.+|++- +| ...++.. .+..+|||||
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt--~n~i~~e~el~~~~~~l~~l~~~gvDgv 93 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVV--VNIAPHNAKLKTFIRDLEPVIAMKPDAL 93 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEE--ecCcCCHHHHHHHHHHHHHHHhCCCCEE
Confidence 45566778887766322110 01 24678889999998763 33 2233321 1236899999
Q ss_pred EeCChHHHHHHHHh
Q 017440 328 IVDLVSEITEAVSD 341 (371)
Q Consensus 328 iTD~p~~l~~~l~~ 341 (371)
+.-+|..+.-+.+.
T Consensus 94 IV~d~G~l~~~ke~ 107 (443)
T PRK15452 94 IMSDPGLIMMVREH 107 (443)
T ss_pred EEcCHHHHHHHHHh
Confidence 99999988766543
No 149
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=60.09 E-value=1.3e+02 Score=26.99 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.5
Q ss_pred hHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 290 PGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 290 ~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
...++.+++. +++|.+=|-+.+.+++.+++ +.|+|+|+.=
T Consensus 162 ~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l-~~GadgV~iG 202 (221)
T PRK01130 162 FALLKELLKAVGCPVIAEGRINTPEQAKKAL-ELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HCCCCEEEEc
Confidence 4667777765 67777655688899998886 6999999764
No 150
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=59.38 E-value=1.5e+02 Score=27.63 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHCC-CCCeEEEcCCCCcc-cCCCCcccHHHHHHHHHhCCCceEecccccccCC--------hHHHHHHHH
Q 017440 229 QPDAALLIRKLQS-TYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN--------PGAIKKIKE 298 (371)
Q Consensus 229 ~~~~l~~l~~~~p-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~v~~~~~ 298 (371)
.+..++.+...+. ++|+..-....+.. +.+ ....+...++.+-.+|++++....+.-..+ .+.++.+|+
T Consensus 63 ~~G~~~~~~~~y~~dvplivkl~~~t~l~~~~-~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~ 141 (265)
T COG1830 63 TPGIARSVHRGYAHDVPLIVKLNGSTSLSPDP-NDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHE 141 (265)
T ss_pred cHhHHhhcCccccCCcCEEEEeccccccCCCc-ccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 4556655554443 56655444333211 111 111122234555678888776554321111 257789999
Q ss_pred hCCeEEEeccc------C----ChHHHH---HHHHhcCceEEEeCCh---HHHHHHHHh
Q 017440 299 AKLCLVSYGEL------N----NVPEVV---YMQRFMGIEGVIVDLV---SEITEAVSD 341 (371)
Q Consensus 299 ~Gl~v~~wgtv------n----~~~~~~---~l~~~~GVdgIiTD~p---~~l~~~l~~ 341 (371)
.|+.+..|... + +.+... ++-.++|+|.|=|++| +.++++..-
T Consensus 142 ~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~e~F~~vv~~ 200 (265)
T COG1830 142 LGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDPESFRRVVAA 200 (265)
T ss_pred cCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCChHHHHHHHHh
Confidence 99999888421 1 111222 2334699999999998 566666543
No 151
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=59.36 E-value=57 Score=29.35 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..+.++.+...|++++.++.. ..+++++.+++.++.+..- +.+.+++..+. +.|+|+|+.+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~---~~~~~~~~~~~~~i~~i~~--v~~~~~~~~~~-~~gad~i~~~~ 130 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG---PPAEVVERLKAAGIKVIPT--VTSVEEARKAE-AAGADALVAQG 130 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC---CCHHHHHHHHHcCCEEEEe--CCCHHHHHHHH-HcCCCEEEEeC
Confidence 556677888899999987644 3678899999999888654 55666776664 68999998744
No 152
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=58.99 E-value=85 Score=24.51 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
.+...+++.+.+.+ .++++...+++.+..++... +++ +..... + .+.++.+.-..+..+.....
T Consensus 8 ~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~~~--~~~--i~gd~~---------~-~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 8 RIGREIAEQLKEGG--IDVVVIDRDPERVEELREEG--VEV--IYGDAT---------D-PEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTT--SEE--EES-TT---------S-HHHHHHTTGGCESEEEEESS
T ss_pred HHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHhcc--ccc--ccccch---------h-hhHHhhcCccccCEEEEccC
Confidence 45667777777732 46888889999988888753 332 222211 1 12223232233444443322
Q ss_pred cccCChHHHHHHHHhC--CeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 285 AIFKNPGAIKKIKEAK--LCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~G--l~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
....+-.....+++.+ .++++- +++.+....+ +.+|+|.|++
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~--~~~~~~~~~l-~~~g~d~vi~ 115 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIAR--VNDPENAELL-RQAGADHVIS 115 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEE--ESSHHHHHHH-HHTT-SEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHH-HHCCcCEEEC
Confidence 2112334566777744 455554 6777766666 5799999875
No 153
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.96 E-value=88 Score=28.48 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=42.5
Q ss_pred CCCceEecccccc---cCChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 274 GGLQGIVSEVRAI---FKNPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 274 ~~~~~v~~~~~~~---~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.|...+.+.+..- -+++++++.+++. ++.+.+=|-+.+.++++.++ +.|+|+|++-.
T Consensus 148 ~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs 209 (223)
T TIGR01768 148 LGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGN 209 (223)
T ss_pred cCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECc
Confidence 5777676665422 2458899999886 57775555699999999986 68999998865
No 154
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.23 E-value=1e+02 Score=29.42 Aligned_cols=107 Identities=12% Similarity=0.015 Sum_probs=61.8
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc--------------cCChHHHH
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------------FKNPGAIK 294 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~v~ 294 (371)
.+.++.+++.. +++++++-.................+.++.+...|++.+++..... ......++
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAE 274 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHH
Confidence 46777777765 5677776554321000000001223345555677888886542210 01224556
Q ss_pred HHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 295 KIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 295 ~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
.+++. +++|.+-|-+.+.+++.+++..-|+|.|..-++-...
T Consensus 275 ~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~lad 317 (327)
T cd02803 275 KIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLAD 317 (327)
T ss_pred HHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhC
Confidence 66654 6778776678889999999743489999876654443
No 155
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=58.21 E-value=1.2e+02 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCceEeccccccc---CChHHHHHHHHh-C-CeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 265 DEAIKVCLAGGLQGIVSEVRAIF---KNPGAIKKIKEA-K-LCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~~v~~~~~~-G-l~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.+..+.+...|+++++++....- ..-+.++.++++ + ++|..-|-|.+.+++.+++ ..|+|+|+.=+
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l-~~GAd~VmvgR 221 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEML-KAGADFVSVAR 221 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHH-HhCCCeEEEcH
Confidence 34556677889999887632210 234678888887 3 8899888899999999997 48999998755
No 156
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=57.87 E-value=77 Score=29.35 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=63.0
Q ss_pred cCCCCeEEec--------CCHHHHHHHHHHCCCCCeEEEcCCCC--cccCCCCcccHHHHHHHHHhCCCceEeccccc--
Q 017440 218 AQGRPIMFSS--------FQPDAALLIRKLQSTYPVFFLTNGGA--QTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-- 285 (371)
Q Consensus 218 ~~~~~v~i~S--------f~~~~l~~l~~~~p~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 285 (371)
+-.+|+-++| .+...++.+++.. ++|+..++.+.. ..|.+.....+.+-++.++..|++|++...-.
T Consensus 20 ~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~d 98 (248)
T PRK11572 20 AGADRIELCAAPKEGGLTPSLGVLKSVRERV-TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVD 98 (248)
T ss_pred cCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC
Confidence 3456787765 6677888887753 689887776542 11222111223456777889999998864211
Q ss_pred ccCChH----HHHHHHHhCCeEEEec---ccCChHHHHHHHHhcCceEEEeCC
Q 017440 286 IFKNPG----AIKKIKEAKLCLVSYG---ELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 286 ~~~~~~----~v~~~~~~Gl~v~~wg---tvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
--++.+ +++.+ .|+++..+. .+.|+.+..+.+.++|++.|.|--
T Consensus 99 g~vD~~~~~~Li~~a--~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSG 149 (248)
T PRK11572 99 GHVDMPRMRKIMAAA--GPLAVTFHRAFDMCANPLNALKQLADLGVARILTSG 149 (248)
T ss_pred CCcCHHHHHHHHHHh--cCCceEEechhhccCCHHHHHHHHHHcCCCEEECCC
Confidence 012333 44443 256654331 233444433333479999999853
No 157
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.72 E-value=59 Score=31.65 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=54.7
Q ss_pred HHHHHHHHHHC-----CCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc--------cCChHHHHHH
Q 017440 230 PDAALLIRKLQ-----STYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------FKNPGAIKKI 296 (371)
Q Consensus 230 ~~~l~~l~~~~-----p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~~~v~~~ 296 (371)
.++++.+|+.. +++++++-.................+.++.+...|++.+++..... ......++.+
T Consensus 198 ~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~i 277 (353)
T cd04735 198 LAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELV 277 (353)
T ss_pred HHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHH
Confidence 35677777765 4677776554321100011001122344555667888887653110 0013455556
Q ss_pred HHh---CCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 297 KEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 297 ~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
++. +++|.+=|-+.+++++.+++. .|+|+|.
T Consensus 278 k~~~~~~iPVi~~Ggi~t~e~ae~~l~-~gaD~V~ 311 (353)
T cd04735 278 KERIAGRLPLIAVGSINTPDDALEALE-TGADLVA 311 (353)
T ss_pred HHHhCCCCCEEEECCCCCHHHHHHHHH-cCCChHH
Confidence 554 677777667889999999875 4888764
No 158
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=57.24 E-value=1.6e+02 Score=27.26 Aligned_cols=141 Identities=13% Similarity=0.014 Sum_probs=84.0
Q ss_pred CHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCC------CCeEEecCCHHHHHHHHHHCCCCCe
Q 017440 172 TLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPV 245 (371)
Q Consensus 172 tL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~------~~v~i~Sf~~~~l~~l~~~~p~~~~ 245 (371)
.|.+.|. .+++.+.-|+|..++.... .....-...+.....+.|.. +.-+| .-+.+.+..+++. -++|+
T Consensus 40 ~~~~~l~--~~~~~vIaeik~~sps~g~-i~~~~~~~~~A~~~~~~GA~aisvlte~~~f-~g~~~~l~~v~~~-v~iPv 114 (260)
T PRK00278 40 DFAAALR--AGKPAVIAEVKKASPSKGV-IREDFDPVEIAKAYEAGGAACLSVLTDERFF-QGSLEYLRAARAA-VSLPV 114 (260)
T ss_pred CHHHHHh--cCCCeEEEEeeCCCCCCCc-cCCCCCHHHHHHHHHhCCCeEEEEecccccC-CCCHHHHHHHHHh-cCCCE
Confidence 3666665 4568999999985542100 00000112334444454432 11122 2457888888876 35777
Q ss_pred EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc--CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcC
Q 017440 246 FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMG 323 (371)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~G 323 (371)
.. .. +-...+ -+..+...|++++.+....+- .-.++++.+++.|+.+.+= +.+.++..+.. +.|
T Consensus 115 l~--kd-------fi~~~~--qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lve--vh~~~E~~~A~-~~g 180 (260)
T PRK00278 115 LR--KD-------FIIDPY--QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVE--VHDEEELERAL-KLG 180 (260)
T ss_pred Ee--ee-------ecCCHH--HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-HcC
Confidence 63 11 111112 356778899999987765421 1236889999999999985 66777887775 789
Q ss_pred ceEEEeCC
Q 017440 324 IEGVIVDL 331 (371)
Q Consensus 324 VdgIiTD~ 331 (371)
+|.|..+.
T Consensus 181 adiIgin~ 188 (260)
T PRK00278 181 APLIGINN 188 (260)
T ss_pred CCEEEECC
Confidence 99887554
No 159
>PRK00208 thiG thiazole synthase; Reviewed
Probab=57.23 E-value=31 Score=31.87 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=32.3
Q ss_pred HHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 291 GAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 291 ~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.++.++.. |+.|+.| +.+|....+++. ++|++.|++
T Consensus 111 ~tv~aa~~L~~~Gf~vlpy-c~~d~~~ak~l~-~~G~~~vmP 150 (250)
T PRK00208 111 ETLKAAEILVKEGFVVLPY-CTDDPVLAKRLE-EAGCAAVMP 150 (250)
T ss_pred HHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-HcCCCEeCC
Confidence 577777777 9999999 899999998885 799999988
No 160
>PRK08005 epimerase; Validated
Probab=57.01 E-value=94 Score=28.02 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=51.8
Q ss_pred cHHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhC---CeEEEecccCChHHHHHHHHhcCceEEE-----
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAK---LCLVSYGELNNVPEVVYMQRFMGIEGVI----- 328 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~G---l~v~~wgtvn~~~~~~~l~~~~GVdgIi----- 328 (371)
.+.+-++.+...|++.+|.+.- .+...+..++.+++.- +.|+.. +.+++.+...+.+.|+|.|+
T Consensus 14 ~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLM--v~~P~~~i~~~~~~gad~It~H~Ea 91 (210)
T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLM--VSSPQRWLPWLAAIRPGWIFIHAES 91 (210)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEec--cCCHHHHHHHHHHhCCCEEEEcccC
Confidence 3556667777788888876631 1234688999998753 445554 66777766555579999775
Q ss_pred eCChHHHHHHHHhh
Q 017440 329 VDLVSEITEAVSDF 342 (371)
Q Consensus 329 TD~p~~l~~~l~~~ 342 (371)
|+++..+.+.+++.
T Consensus 92 ~~~~~~~l~~Ik~~ 105 (210)
T PRK08005 92 VQNPSEILADIRAI 105 (210)
T ss_pred ccCHHHHHHHHHHc
Confidence 55666666666664
No 161
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=56.54 E-value=1.5e+02 Score=28.40 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCceEecccccc------cCChHHHHHHHH-hCCeEEEecccCChHHHHHHHHhcCceEEEeC-----C
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKE-AKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD-----L 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~-~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD-----~ 331 (371)
..+..+.+...|++.+.++.... ..+-+.++.+++ .+++|..-|-+.+.+++.+++...|+|||+.= +
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~n 230 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcC
Confidence 34455566777888876654321 123356666665 46889888889999999998755799999986 5
Q ss_pred hHHHHHHH
Q 017440 332 VSEITEAV 339 (371)
Q Consensus 332 p~~l~~~l 339 (371)
|..+.+..
T Consensus 231 P~if~~~~ 238 (321)
T PRK10415 231 PWIFREIQ 238 (321)
T ss_pred ChHHHHHH
Confidence 76666653
No 162
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=56.27 E-value=1.2e+02 Score=25.27 Aligned_cols=81 Identities=22% Similarity=0.159 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhCCCceEecccccc---cCChHHHHHHHHhCC---eEEEeccc-CC---hHHHHHHHHhcCceEEEe--C
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAI---FKNPGAIKKIKEAKL---CLVSYGEL-NN---VPEVVYMQRFMGIEGVIV--D 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~~~~Gl---~v~~wgtv-n~---~~~~~~l~~~~GVdgIiT--D 330 (371)
+.++.++.+...+++.|.+..... ..-+++++.+++.|. .+++=|.+ .. ..+....++++|+|.|++ .
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 456666777777777766553211 112568888888855 34444432 11 233333346799999987 2
Q ss_pred ChHHHHHHHHhhh
Q 017440 331 LVSEITEAVSDFI 343 (371)
Q Consensus 331 ~p~~l~~~l~~~~ 343 (371)
.++....++++..
T Consensus 122 ~~~~i~~~l~~~~ 134 (137)
T PRK02261 122 DPEEAIDDLKKDL 134 (137)
T ss_pred CHHHHHHHHHHHh
Confidence 3455556665544
No 163
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=56.01 E-value=1.2e+02 Score=27.48 Aligned_cols=100 Identities=14% Similarity=0.035 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC-hHHHHHHHHhCCeEEEe
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN-PGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~v~~~~~~Gl~v~~w 306 (371)
+--++++.+|+.+|+-.+..-... .|. +.++ .+.+...|++.+....-....| .+.++.+|+.|..+++=
T Consensus 42 eG~~aV~~lr~~~pd~~IvAD~Kt-----~D~--G~~e--~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iD 112 (217)
T COG0269 42 EGMRAVRALRELFPDKIIVADLKT-----ADA--GAIE--ARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQID 112 (217)
T ss_pred hhHHHHHHHHHHCCCCeEEeeeee-----cch--hHHH--HHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEE
Confidence 444678888998888666543221 111 2222 3556677887665432211111 36788899999887753
Q ss_pred c-ccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 307 G-ELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 307 g-tvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
- -+.++++..+.+..+|+|.++--+.....
T Consensus 113 l~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q 143 (217)
T COG0269 113 LIGVWDPEQRAKWLKELGVDQVILHRGRDAQ 143 (217)
T ss_pred eecCCCHHHHHHHHHHhCCCEEEEEecccHh
Confidence 0 24455666666545999999876654444
No 164
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=55.91 E-value=60 Score=32.23 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=56.9
Q ss_pred EecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHH-HHHHHhCCCceEeccccccc-CChHHHHHHHHhCCe
Q 017440 225 FSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEA-IKVCLAGGLQGIVSEVRAIF-KNPGAIKKIKEAKLC 302 (371)
Q Consensus 225 i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~v~~~~~~Gl~ 302 (371)
+.+|-.+.++.+++..|+.++..=..- .| .... ++.+...|++.+..+..... .-.+.++.+++.|+.
T Consensus 209 ~~~~G~~iVk~Lr~~~~~~~I~~DLK~-----~D-----i~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~Gik 278 (391)
T PRK13307 209 IKKFGLEVISKIREVRPDAFIVADLKT-----LD-----TGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIY 278 (391)
T ss_pred HHHhCHHHHHHHHHhCCCCeEEEEecc-----cC-----hhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCE
Confidence 456888999999998777665442221 11 1122 45566889998888765321 123578899999999
Q ss_pred EEEecccC--ChHHHHHHHHhcCceEE
Q 017440 303 LVSYGELN--NVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 303 v~~wgtvn--~~~~~~~l~~~~GVdgI 327 (371)
+.+= .+| ++.+..+.+ ..++|.|
T Consensus 279 vgVD-~lnp~tp~e~i~~l-~~~vD~V 303 (391)
T PRK13307 279 SILD-MLNVEDPVKLLESL-KVKPDVV 303 (391)
T ss_pred EEEE-EcCCCCHHHHHHHh-hCCCCEE
Confidence 8873 233 444443332 4688866
No 165
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=55.89 E-value=2e+02 Score=27.92 Aligned_cols=141 Identities=13% Similarity=0.070 Sum_probs=84.5
Q ss_pred CHHHHHHhcC---CCceEEEEeccCCcccchh-HHHHHHHHHHHHHHHHhcC------CCCeEEecCCHHHHHHHHHHCC
Q 017440 172 TLQEAFEKVD---QSVGFNVELKFDDQLVYTE-EELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQS 241 (371)
Q Consensus 172 tL~evL~~~~---~~~~l~iEiK~~~~~~~~~-~~~~~~~~~vl~~l~~~~~------~~~v~i~Sf~~~~l~~l~~~~p 241 (371)
.|.++|.... ++..+.-|+|..++....- ..+ -...+.+.+++.|. .++-+|+. +.+.|..+|+..-
T Consensus 104 ~f~~aL~~~~~~~g~~~vIAEvKrASPSkG~I~~~~--dp~~iA~~Ye~~GA~aISVLTd~~~F~G-s~e~L~~vr~~~v 180 (338)
T PLN02460 104 DFVGALRAAHKRTGQPGLIAEVKKASPSRGVLRENF--DPVEIAQAYEKGGAACLSVLTDEKYFQG-SFENLEAIRNAGV 180 (338)
T ss_pred CHHHHHHhhccccCCcceEeeeccCCCCCCccCCCC--CHHHHHHHHHhCCCcEEEEecCcCcCCC-CHHHHHHHHHcCC
Confidence 4666665421 2378999999755431100 000 02344455555553 33444443 5677888888633
Q ss_pred CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC----hHHHHHHHHhCCeEEEecccCChHHHHH
Q 017440 242 TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCLVSYGELNNVPEVVY 317 (371)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~~~~Gl~v~~wgtvn~~~~~~~ 317 (371)
++|+.. . |+-.. ..-+..++..|++.|.+-...+ + .++++.+++.|+.+.+= |.+.+++.+
T Consensus 181 ~lPvLr--K-------DFIID--~yQI~eAr~~GADAVLLIaaiL--~~~~L~~l~~~A~~LGme~LVE--VH~~~Eler 245 (338)
T PLN02460 181 KCPLLC--K-------EFIVD--AWQIYYARSKGADAILLIAAVL--PDLDIKYMLKICKSLGMAALIE--VHDEREMDR 245 (338)
T ss_pred CCCEee--c-------cccCC--HHHHHHHHHcCCCcHHHHHHhC--CHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHH
Confidence 566642 1 11001 1224567888988776543332 3 36889999999999984 888999988
Q ss_pred HHHhc-CceEEEeCC
Q 017440 318 MQRFM-GIEGVIVDL 331 (371)
Q Consensus 318 l~~~~-GVdgIiTD~ 331 (371)
.+ +. |++-|-.|+
T Consensus 246 Al-~~~ga~iIGINN 259 (338)
T PLN02460 246 VL-GIEGVELIGINN 259 (338)
T ss_pred HH-hcCCCCEEEEeC
Confidence 86 56 888886666
No 166
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=54.30 E-value=1.1e+02 Score=27.28 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=15.7
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
+.++.+++. +++|.+=+.+.++.++..+. +.|+|+|+
T Consensus 62 ~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~-~~Gad~v~ 99 (217)
T cd00331 62 EDLRAVREAVSLPVLRKDFIIDPYQIYEAR-AAGADAVL 99 (217)
T ss_pred HHHHHHHHhcCCCEEECCeecCHHHHHHHH-HcCCCEEE
Confidence 344444443 34443322233333444442 46666663
No 167
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=54.00 E-value=1.7e+02 Score=26.46 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=51.4
Q ss_pred ecCCHHHHHHHHHHCCCCCeE-EEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEE
Q 017440 226 SSFQPDAALLIRKLQSTYPVF-FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~ 304 (371)
.+|.+..++.+|+..+++|+= -|+- ......++.....|++.+..+++...-..+.++.+|++|.++.
T Consensus 42 ~tfg~~~i~~i~~~~~~~~~dvHLMv-----------~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~G 110 (220)
T PRK08883 42 LTFGAPICKALRDYGITAPIDVHLMV-----------KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAG 110 (220)
T ss_pred cccCHHHHHHHHHhCCCCCEEEEecc-----------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEE
Confidence 378899999999753445431 1211 1234445556678999998888753223478899999999987
Q ss_pred EecccCChHH-HHHHH
Q 017440 305 SYGELNNVPE-VVYMQ 319 (371)
Q Consensus 305 ~wgtvn~~~~-~~~l~ 319 (371)
+--..+++.+ +..++
T Consensus 111 lalnP~Tp~~~i~~~l 126 (220)
T PRK08883 111 VVLNPATPLHHLEYIM 126 (220)
T ss_pred EEeCCCCCHHHHHHHH
Confidence 6423334433 34443
No 168
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=53.50 E-value=1.6e+02 Score=29.77 Aligned_cols=89 Identities=11% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc--c----cccC----------ChHHH
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV--R----AIFK----------NPGAI 293 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~----~~~~----------~~~~v 293 (371)
.+.++.+++.+|+++++. ... .+.+. .+.+...|+++|.+.. . .... -.+..
T Consensus 253 ~~~i~~i~~~~~~~~vi~--G~v---------~t~~~-a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~ 320 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIA--GNV---------ATAEQ-AKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVA 320 (450)
T ss_pred HHHHHHHHHhCCCCCEEE--EeC---------CCHHH-HHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHH
Confidence 346777777778877665 111 12333 3455677888873221 0 0000 02345
Q ss_pred HHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 294 KKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 294 ~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+++.|++|++=|-+.+..++.+.+ .+|++.++.-.
T Consensus 321 ~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~ 357 (450)
T TIGR01302 321 EYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGS 357 (450)
T ss_pred HHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 55677889998877788999998887 79999998654
No 169
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=52.24 E-value=92 Score=30.38 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCC-CCeEEE
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQST-YPVFFL 248 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~-~~~~~l 248 (371)
.+.++ ++.+.+++ -.+++.|||+++++.-.+...+ -|+.|-
T Consensus 147 kfa~a-ve~v~~~~--~pv~l~s~dpevmkaaLev~~dqkPllYa 188 (467)
T COG1456 147 KFAEA-VEKVAEAG--LPVILCSFDPEVMKAALEVVKDQKPLLYA 188 (467)
T ss_pred HHHHH-HHHHHhcC--CcEEEEeCCHHHHHHHHHHhhccCceeee
Confidence 34443 34455665 5699999999999887766555 555554
No 170
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.97 E-value=58 Score=26.96 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCceEeccccc---ccCChHHHHHHHHhCC---eEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA---IFKNPGAIKKIKEAKL---CLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~~~~Gl---~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
.++.++.+.+.+++.+.+.... ...-+.+++.++++|. .+++=|.. -.+++..+ +++|||+++.=
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~-~~~~~~~l-~~~Gvd~~~~~ 112 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI-PPQDFDEL-KEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC-ChHhHHHH-HHCCCCEEECC
Confidence 4455556666666655544211 1123678888999875 45554322 33445555 58999999853
No 171
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=51.94 E-value=1e+02 Score=27.75 Aligned_cols=75 Identities=19% Similarity=0.356 Sum_probs=52.0
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHh--CCeEEEe--cccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA--KLCLVSY--GELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~--Gl~v~~w--gtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
+.+.++.+...|+++|.+. ++..+..+++. ++++++- ..+.+...+..+ .++|++.|+-..--.+.+ +
T Consensus 4 ~~~~l~~l~~~g~dgi~v~------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~-~~~G~~~i~ls~EL~~~e-i 75 (233)
T PF01136_consen 4 LEKYLDKLKELGVDGILVS------NPGLLELLKELGPDLKIIADYSLNVFNSESARFL-KELGASRITLSPELSLEE-I 75 (233)
T ss_pred HHHHHHHHHhCCCCEEEEc------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHH-HHcCCCEEEECccCCHHH-H
Confidence 5666778889999988653 78899999999 5676643 134566777666 479999998876554443 3
Q ss_pred Hhhhccc
Q 017440 340 SDFIKNE 346 (371)
Q Consensus 340 ~~~~~~~ 346 (371)
+++.+..
T Consensus 76 ~~i~~~~ 82 (233)
T PF01136_consen 76 KEIAENS 82 (233)
T ss_pred HHHHHhC
Confidence 4444444
No 172
>PRK14057 epimerase; Provisional
Probab=51.92 E-value=96 Score=28.84 Aligned_cols=78 Identities=6% Similarity=-0.109 Sum_probs=47.8
Q ss_pred HHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE-----eCCh
Q 017440 264 LDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI-----VDLV 332 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi-----TD~p 332 (371)
+.+-++.+...|++.+|.+.- .+...+..++.+++ .+.+-++--+.+++.+.+.+.+.|+|.|+ ++++
T Consensus 34 L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea~~~~ 112 (254)
T PRK14057 34 LHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ-TFIKDVHLMVADQWTAAQACVKAGAHCITLQAEGDIHL 112 (254)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc-CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeeccccCH
Confidence 455566666777777775521 12346788888866 45433332366777765555578999775 5566
Q ss_pred HHHHHHHHhh
Q 017440 333 SEITEAVSDF 342 (371)
Q Consensus 333 ~~l~~~l~~~ 342 (371)
....+.+++.
T Consensus 113 ~~~l~~Ir~~ 122 (254)
T PRK14057 113 HHTLSWLGQQ 122 (254)
T ss_pred HHHHHHHHHc
Confidence 6666666554
No 173
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=51.75 E-value=2.3e+02 Score=27.22 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-----------HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-----------DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
..+..+++.-++. ..+++++.... ..+..+.+..+.+|+++=.+-+. ++ +.+..|..
T Consensus 28 e~~~avi~AAe~~--~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~---------~~-e~i~~ai~ 95 (307)
T PRK05835 28 EMLNAIFEAGNEE--NSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT---------TF-ESCEKAVK 95 (307)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC---------CH-HHHHHHHH
Confidence 4566666665554 45677765331 12333334444578887665432 23 34556778
Q ss_pred CCCceEecccccc------cCChHHHHHHHHhCCeEEEe-----cc------------cCChHHHHHHHHhcCceEE
Q 017440 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVSY-----GE------------LNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 274 ~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~w-----gt------------vn~~~~~~~l~~~~GVdgI 327 (371)
.|+++|..+.+.+ ..|.+.++.+|.+|+.|=+= |. .-++++..++..+.|||.+
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~L 172 (307)
T PRK05835 96 AGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYL 172 (307)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEE
Confidence 8999888775542 34778999999999876320 10 1135667777656677755
No 174
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=51.11 E-value=2e+02 Score=27.78 Aligned_cols=69 Identities=20% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
...++.+...| .++.+ .+..-+..+++.|.. +...+...+.+++..++ +.|+..+..|.++++.++.+-
T Consensus 41 ~~v~~~l~~~G-~g~~v------aS~~E~~~~~~~G~~~~~I~~~~p~k~~~~l~~a~-~~g~~~~~ids~~el~~l~~~ 112 (373)
T cd06828 41 LAILKLLAEEG-LGADV------VSGGELYRALKAGFPPERIVFTGNGKSDEELELAL-ELGILRINVDSLSELERLGEI 112 (373)
T ss_pred HHHHHHHHHcC-CcEEE------eCHHHHHHHHHcCCCcccEEEeCCCCCHHHHHHHH-HcCCeEEEECCHHHHHHHHHH
Confidence 34445555555 33332 245556677777753 44443455677777775 688878888998888876543
No 175
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=50.65 E-value=47 Score=32.97 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=63.5
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEecccccccCC----hHHHHHHHHhCCeE-
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCL- 303 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~~~~Gl~v- 303 (371)
|+-|+.+|+..|+-++-.|..+... .|......-.+..++.+..+|++.+-..-. +.+ ...++.+++.|..+
T Consensus 65 WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDA--lND~RNl~~ai~a~kk~G~h~q 142 (472)
T COG5016 65 WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDA--LNDVRNLKTAIKAAKKHGAHVQ 142 (472)
T ss_pred HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechh--ccchhHHHHHHHHHHhcCceeE
Confidence 6779999999988776555444321 111111112455677778888877653211 122 24678889999765
Q ss_pred --EEeccc---CChHHH----HHHHHhcCceEEEeCC------hHHHHHHHHh
Q 017440 304 --VSYGEL---NNVPEV----VYMQRFMGIEGVIVDL------VSEITEAVSD 341 (371)
Q Consensus 304 --~~wgtv---n~~~~~----~~l~~~~GVdgIiTD~------p~~l~~~l~~ 341 (371)
.+| |. .+.+.+ +++ .++|||.|+--+ |..+-++++.
T Consensus 143 ~~i~Y-T~sPvHt~e~yv~~akel-~~~g~DSIciKDmaGlltP~~ayelVk~ 193 (472)
T COG5016 143 GTISY-TTSPVHTLEYYVELAKEL-LEMGVDSICIKDMAGLLTPYEAYELVKA 193 (472)
T ss_pred EEEEe-ccCCcccHHHHHHHHHHH-HHcCCCEEEeecccccCChHHHHHHHHH
Confidence 466 43 333332 233 369999998654 5555555544
No 176
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=50.51 E-value=2.1e+02 Score=28.25 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred HHHHHhcCCCCeEEecCC--HHHHHHHHHHCCC--CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc
Q 017440 212 KVVFEHAQGRPIMFSSFQ--PDAALLIRKLQST--YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF 287 (371)
Q Consensus 212 ~~l~~~~~~~~v~i~Sf~--~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 287 (371)
+++++++ .++++.+.+ ...++.+++..|. ..+.+.+.. +.....++.+...|+ ++.+
T Consensus 18 ~l~~~~~--tP~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKa----------N~~~~vl~~l~~~G~-g~dv------ 78 (417)
T TIGR01048 18 ELAEEFG--TPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKA----------NSNLALLRLLAELGS-GFDV------ 78 (417)
T ss_pred HHHHhhC--CCEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehh----------CCCHHHHHHHHHcCC-cEEE------
Confidence 3444554 345554322 2334455555554 445554433 223445566666664 3322
Q ss_pred CChHHHHHHHHhCCe--EEEe-cccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 288 KNPGAIKKIKEAKLC--LVSY-GELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 288 ~~~~~v~~~~~~Gl~--v~~w-gtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
.++.-++.+++.|.. -.++ +...+.+++..++ +.|+..+..|..+++..+.+
T Consensus 79 aS~~E~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~-~~gi~~i~iDs~~el~~l~~ 133 (417)
T TIGR01048 79 VSGGELYRALAAGFPPEKIVFNGNGKSRAELERAL-ELGIRCINVDSESELELLNE 133 (417)
T ss_pred eCHHHHHHHHHcCCCcceEEEeCCCCCHHHHHHHH-HcCCCEEEeCCHHHHHHHHH
Confidence 256667788888864 3444 2345777887775 78998899999999987754
No 177
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=50.36 E-value=2.2e+02 Score=26.75 Aligned_cols=51 Identities=10% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC-----ChHHHHHHHHhh
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD-----LVSEITEAVSDF 342 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD-----~p~~l~~~l~~~ 342 (371)
+.+..++++ ++.|..=|-+.+.+++.+++ ..|+|+|..= .|..+.++.+..
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 224 RMVYQVYQAVDIPIIGMGGISSAEDAIEFI-MAGASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence 566777665 78887766799999999987 5899887532 455555555444
No 178
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.13 E-value=2.5e+02 Score=27.22 Aligned_cols=106 Identities=11% Similarity=0.119 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc--ccccCChHHHHHHHHhCCeEEEe
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV--RAIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
+.+.++.++...++.++..+...+. ... +-++.+...|++.+.... .......+.++.++++|+.|.+.
T Consensus 64 ~~e~i~~~~~~~~~~~~~~ll~pg~--------~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 64 DEEYIEAAAEVVKQAKIAALLLPGI--------GTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCc--------ccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 4677777776666666554332211 122 235667777887755332 21122457899999999988754
Q ss_pred c---ccCChHHHHH---HHHhcCceEEE-eCC-----hHHHHHHHHhhh
Q 017440 307 G---ELNNVPEVVY---MQRFMGIEGVI-VDL-----VSEITEAVSDFI 343 (371)
Q Consensus 307 g---tvn~~~~~~~---l~~~~GVdgIi-TD~-----p~~l~~~l~~~~ 343 (371)
. +..+++.+.+ .+.+.|+|.|. .|- |..+.+.++...
T Consensus 135 l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 135 LMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred EEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 1 1223443332 22468999875 453 777776666554
No 179
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=50.00 E-value=1.1e+02 Score=28.08 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=47.9
Q ss_pred cHHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE-----eCC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI-----VDL 331 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi-----TD~ 331 (371)
.+.+-++.+...|++.+|.+.- .+...+..++.+++ .+.+-++--+.+++.+.+.+.+.|+|.|+ +++
T Consensus 26 ~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~-~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea~~~ 104 (228)
T PRK08091 26 KFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT-HCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQTHD 104 (228)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC-CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCccc
Confidence 3455566667777777776521 12346778888864 54443332356677765555578988775 455
Q ss_pred hHHHHHHHHhhh
Q 017440 332 VSEITEAVSDFI 343 (371)
Q Consensus 332 p~~l~~~l~~~~ 343 (371)
+..+.+.+++..
T Consensus 105 ~~~~l~~Ik~~g 116 (228)
T PRK08091 105 LALTIEWLAKQK 116 (228)
T ss_pred HHHHHHHHHHCC
Confidence 556656555543
No 180
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=49.77 E-value=1.7e+02 Score=26.14 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=38.6
Q ss_pred ChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC-----hHHHHHHHHhh
Q 017440 289 NPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL-----VSEITEAVSDF 342 (371)
Q Consensus 289 ~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-----p~~l~~~l~~~ 342 (371)
+.++++.+.+. ++++.+-|-+++.+++++++ ..|+|.|+... |+.+.++.+.+
T Consensus 61 ~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 61 NLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred CHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECchHHhChHHHHHHHHHc
Confidence 45667776655 57888877899999998886 69999988765 44556665554
No 181
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=49.47 E-value=67 Score=26.53 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhCCCceEecccc---cccCChHHHHHHHHhCC-e--EEEeccc-CChHH----HHHHHHhcCceEEEeC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR---AIFKNPGAIKKIKEAKL-C--LVSYGEL-NNVPE----VVYMQRFMGIEGVIVD 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~v~~~~~~Gl-~--v~~wgtv-n~~~~----~~~l~~~~GVdgIiTD 330 (371)
+.++.++.+.+.+++.+.++.- ....-+++++.++++|+ . |++=|.+ -.+++ ...+ +++|||.+++-
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L-~~~Gv~~vf~p 115 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRF-KEMGFDRVFAP 115 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHH-HHcCCCEEECc
Confidence 4566777777777776665421 11112578889999986 3 4443321 11122 2334 58999999983
No 182
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=48.95 E-value=96 Score=28.18 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=46.5
Q ss_pred cCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccC-ChHHHHHHHHhCCeEEE
Q 017440 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFK-NPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~v~~~~~~Gl~v~~ 305 (371)
+|.+..++.+++..|++++=.=... ......++.+...|++.+.++++.... -.+.++.+++.|+++.+
T Consensus 50 ~~G~~~v~~lr~~~~~~~lDvHLm~----------~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gv 119 (228)
T PTZ00170 50 SFGPPVVKSLRKHLPNTFLDCHLMV----------SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGV 119 (228)
T ss_pred CcCHHHHHHHHhcCCCCCEEEEECC----------CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEE
Confidence 6788999999987777664221111 234455667778899988888764311 24678888999988764
No 183
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.95 E-value=2.3e+02 Score=26.53 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=29.4
Q ss_pred ChHHHHHHHHh-CCeE-EEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 289 NPGAIKKIKEA-KLCL-VSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 289 ~~~~v~~~~~~-Gl~v-~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..+.++.+|+. ++++ .-+ -+.++++++++. +. +|||+.-.
T Consensus 193 ~~~~v~~vr~~~~~Pv~vGF-GIs~~e~~~~v~-~~-ADGVIVGS 234 (265)
T COG0159 193 VKELVKRVRKYTDVPVLVGF-GISSPEQAAQVA-EA-ADGVIVGS 234 (265)
T ss_pred HHHHHHHHHHhcCCCeEEec-CcCCHHHHHHHH-Hh-CCeEEEcH
Confidence 35778888875 4665 456 489999998885 57 99998753
No 184
>cd08586 PI-PLCc_BcPLC_like Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which
Probab=48.77 E-value=1.4e+02 Score=28.16 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.1
Q ss_pred cchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 76 ENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 76 ENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
.+--.++..-++.|+.+++++|+...++.+.++|...
T Consensus 33 ~~Q~~~i~~QL~~GiR~lDiR~~~~~~~~l~~~Hg~~ 69 (279)
T cd08586 33 QCQDWSIAEQLNAGIRFLDIRLRLIDNNDLAIHHGPF 69 (279)
T ss_pred ecCCCCHHHHHhcCCeEEEEEeeecCCCeEEEEccCc
Confidence 3444567888999999999999998778999999643
No 185
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=48.69 E-value=82 Score=25.38 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCceEecccccc---cCChHHHHHHHHhCC-e--EEEecccCChHHHHHHHHhcCceEEEe
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAI---FKNPGAIKKIKEAKL-C--LVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~~~~Gl-~--v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
.++.++.+...+++.+.+..... -.-+++++.+++.|. . +++=|. .-++++..+ .++|+|++|-
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~-~~~G~d~~~~ 108 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI-IPPEDYELL-KEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHH-HHCCCCEEEC
Confidence 45555666666666665543210 012567888888865 3 333332 223445555 4799998874
No 186
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=48.61 E-value=2e+02 Score=27.72 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc------cCChHHHHHHHHhC--CeE
Q 017440 232 AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAK--LCL 303 (371)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~~G--l~v 303 (371)
.++.+++..+++|+..=+.-+. .+.. ....+..+.+.+.|++.+.++.+.. -.+=+.|.++++.- +.|
T Consensus 126 iv~a~~~av~~iPVTVKiRlG~---d~~~-~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipv 201 (323)
T COG0042 126 IVKAMVEAVGDIPVTVKIRLGW---DDDD-ILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPV 201 (323)
T ss_pred HHHHHHHhhCCCCeEEEEeccc---Cccc-ccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeE
Confidence 4455555555677765443331 1110 0134456667788888888775431 12335666666653 678
Q ss_pred EEecccCChHHHHHHHHhcCceEEEe-----CChHHHHHH
Q 017440 304 VSYGELNNVPEVVYMQRFMGIEGVIV-----DLVSEITEA 338 (371)
Q Consensus 304 ~~wgtvn~~~~~~~l~~~~GVdgIiT-----D~p~~l~~~ 338 (371)
..-|.|.+.+++.+++...|+|||+. .+|-.+.+.
T Consensus 202 i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 202 IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 88888889999999886689999997 557676664
No 187
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=48.48 E-value=21 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=30.5
Q ss_pred cchHHHHHHHHhCCCCEEEEEEeeec-CCeEEEecCCC
Q 017440 76 ENTILSFNAAARHPLDFIEFDVQVTR-DGCPVIFHDNF 112 (371)
Q Consensus 76 ENTl~Af~~A~~~Gad~IE~DV~lTk-DG~lVv~HD~~ 112 (371)
.|--..+...++.|+.++|+||+... ++.+.++|...
T Consensus 37 ~~Q~~~i~~QL~~GiR~~dlr~~~~~~~~~~~~~H~~~ 74 (271)
T cd08557 37 KTQDLSITDQLDAGVRYLDLRVAYDPDDGDLYVCHGLF 74 (271)
T ss_pred hccCCCHHHHHhcCceEEEEEeeeecCCCcEEEEcccc
Confidence 34445688899999999999999987 68999999744
No 188
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=48.18 E-value=1.5e+02 Score=33.83 Aligned_cols=112 Identities=11% Similarity=0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeE---
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCL--- 303 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v--- 303 (371)
|+-|+.+|+..|+.++-.|..+... .|.....+-+...++.+.+.|++.+-.... +.-.-...++.++++|..+
T Consensus 592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~ 671 (1143)
T TIGR01235 592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAA 671 (1143)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 6778999999999999877766432 122222233556777788889887654211 1101135788899999875
Q ss_pred EEeccc---------CChH---HHHHHHHhcCceEEEeCC------hHHHHHHHHhh
Q 017440 304 VSYGEL---------NNVP---EVVYMQRFMGIEGVIVDL------VSEITEAVSDF 342 (371)
Q Consensus 304 ~~wgtv---------n~~~---~~~~l~~~~GVdgIiTD~------p~~l~~~l~~~ 342 (371)
.+| |. .+.+ ++.+.+.++|+|.|.-=+ |..+.++++..
T Consensus 672 i~y-t~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~l 727 (1143)
T TIGR01235 672 ICY-TGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKAL 727 (1143)
T ss_pred EEE-eccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHH
Confidence 567 62 1222 222223479999885433 66666655543
No 189
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=47.96 E-value=81 Score=27.43 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=50.1
Q ss_pred HHHHhCCCceEecccccc-------cCChH---HHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC---hHHH
Q 017440 269 KVCLAGGLQGIVSEVRAI-------FKNPG---AIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL---VSEI 335 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~-------~~~~~---~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~---p~~l 335 (371)
+..+..|+.++.++.... ..+|+ .+.+++++|+++++- .=|+.....++...+||+.|.--. +..+
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vv-SNn~e~RV~~~~~~l~v~fi~~A~KP~~~~f 99 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVV-SNNKESRVARAAEKLGVPFIYRAKKPFGRAF 99 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEE-eCCCHHHHHhhhhhcCCceeecccCccHHHH
Confidence 445677888877765432 23454 567778889998887 446666666665579999886543 5666
Q ss_pred HHHHHhhhcc
Q 017440 336 TEAVSDFIKN 345 (371)
Q Consensus 336 ~~~l~~~~~~ 345 (371)
+++++++.-+
T Consensus 100 r~Al~~m~l~ 109 (175)
T COG2179 100 RRALKEMNLP 109 (175)
T ss_pred HHHHHHcCCC
Confidence 7777766443
No 190
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=47.31 E-value=1.7e+02 Score=30.02 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeE-
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCL- 303 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v- 303 (371)
-.|+.|+.+++..|+.++..+..+... .|.....+-....++.+...|++.+..... ..-.-...++.++++|..+
T Consensus 62 dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~ 141 (499)
T PRK12330 62 DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQ 141 (499)
T ss_pred CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEE
Confidence 458899999999999999877765321 122211123455677778889887664321 1111245788999999865
Q ss_pred --EEeccc---CChHHHHHH---HHhcCceEEEe-C-----ChHHHHHHHHhhh
Q 017440 304 --VSYGEL---NNVPEVVYM---QRFMGIEGVIV-D-----LVSEITEAVSDFI 343 (371)
Q Consensus 304 --~~wgtv---n~~~~~~~l---~~~~GVdgIiT-D-----~p~~l~~~l~~~~ 343 (371)
.+| |+ .+.+.+.++ +.++|+|.|.- | .|..+.++++...
T Consensus 142 ~~i~y-t~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk 194 (499)
T PRK12330 142 GTICY-TVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIK 194 (499)
T ss_pred EEEEE-ecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHH
Confidence 355 43 344333222 24699998854 3 3667666665543
No 191
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=47.17 E-value=2.4e+02 Score=26.86 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCceEecccccc------cCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC-----C
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD-----L 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD-----~ 331 (371)
..+..+.+...|++.+.++.... ...-+.++.+++. +++|.+-|-+.+.+++.+++...|+|+|+.= +
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~ 228 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGN 228 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhC
Confidence 34455566677888777653211 1123456666654 6888887789999999998756899999875 4
Q ss_pred hHHHHHHH
Q 017440 332 VSEITEAV 339 (371)
Q Consensus 332 p~~l~~~l 339 (371)
|..+.++.
T Consensus 229 P~l~~~~~ 236 (319)
T TIGR00737 229 PWLFRQIE 236 (319)
T ss_pred ChHHHHHH
Confidence 55555543
No 192
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.61 E-value=1e+02 Score=25.61 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=47.0
Q ss_pred cHHHHHHHHHhCCCceEeccccc---ccCChHHHHHHHHhCCe---EEEecc-cCChHHH---HHHHHhcCceEEEe--C
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA---IFKNPGAIKKIKEAKLC---LVSYGE-LNNVPEV---VYMQRFMGIEGVIV--D 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~v~~~~~~Gl~---v~~wgt-vn~~~~~---~~l~~~~GVdgIiT--D 330 (371)
+.++.++.+.+.+++.|.++.-. ...-+++++.++++|+. +++=|+ +.-+++. ...++++|+|.|+. .
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT 119 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC
Confidence 45667777777777776654321 11125688899999863 223332 1222222 22236899999997 4
Q ss_pred ChHHHHHHHHhh
Q 017440 331 LVSEITEAVSDF 342 (371)
Q Consensus 331 ~p~~l~~~l~~~ 342 (371)
.++.+.+++++.
T Consensus 120 ~~~~iv~~l~~~ 131 (134)
T TIGR01501 120 PPEVVIADLKKD 131 (134)
T ss_pred CHHHHHHHHHHH
Confidence 566666666654
No 193
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=46.29 E-value=2.3e+02 Score=25.73 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHCCCCCeE-EEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEE
Q 017440 227 SFQPDAALLIRKLQSTYPVF-FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~ 305 (371)
+|.+..++.+|+..+++|+= -|+- ......++.....|++.+..+++...-..+.++.+|++|.+..+
T Consensus 47 tfg~~~i~~lr~~~~~~~~dvHLMv-----------~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~Gl 115 (223)
T PRK08745 47 TIGPMVCQALRKHGITAPIDVHLMV-----------EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGL 115 (223)
T ss_pred ccCHHHHHHHHhhCCCCCEEEEecc-----------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeE
Confidence 68899999999764455531 1221 12344455556779999988887432234788999999998876
Q ss_pred ecccCChH-HHHHHHHhcCceEEEeCChH
Q 017440 306 YGELNNVP-EVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 306 wgtvn~~~-~~~~l~~~~GVdgIiTD~p~ 333 (371)
=-...++- ...+++...-.=-|+|=.|.
T Consensus 116 alnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 116 VLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred EeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 41233333 34444432222234555554
No 194
>PRK00865 glutamate racemase; Provisional
Probab=46.21 E-value=2.4e+02 Score=26.02 Aligned_cols=77 Identities=16% Similarity=0.069 Sum_probs=55.1
Q ss_pred CccCHHHHHHhcCC-CceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHH--HHHHHHHHCCCCCe
Q 017440 169 PLCTLQEAFEKVDQ-SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPD--AALLIRKLQSTYPV 245 (371)
Q Consensus 169 ~iptL~evL~~~~~-~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~--~l~~l~~~~p~~~~ 245 (371)
.+.-|+++.+.+|+ ++.+.-|.+.-+....+.+++..++..+++.+.+.+.. -+++.++... .+..+++.. ++|+
T Consensus 17 GLtvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d-~iVIaCNTa~~~~l~~lr~~~-~iPv 94 (261)
T PRK00865 17 GLTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVK-MLVIACNTASAVALPDLRERY-DIPV 94 (261)
T ss_pred HHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCC-EEEEeCchHHHHHHHHHHHhC-CCCE
Confidence 35568899999984 78888999987654445566777777777777776643 4667777654 578888876 5776
Q ss_pred EE
Q 017440 246 FF 247 (371)
Q Consensus 246 ~~ 247 (371)
.=
T Consensus 95 ig 96 (261)
T PRK00865 95 VG 96 (261)
T ss_pred Ee
Confidence 53
No 195
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=46.15 E-value=32 Score=31.94 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=30.3
Q ss_pred ChHHHHHHHHhCCeEEEecccCChHH-----HHHHHHhcCceEEEeCChH
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNVPE-----VVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~~~-----~~~l~~~~GVdgIiTD~p~ 333 (371)
.+++++.+|++|+++.+| +---..+ +++++.+.||||+-+|.-+
T Consensus 68 p~~~i~~l~~~g~~~~~~-~~P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E 116 (265)
T cd06589 68 PKSMIDELHDNGVKLVLW-IDPYIREWWAEVVKKLLVSLGVDGFWTDMGE 116 (265)
T ss_pred HHHHHHHHHHCCCEEEEE-eChhHHHHHHHHHHHhhccCCCCEEeccCCC
Confidence 357999999999999999 4222111 1222235799999999754
No 196
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=45.94 E-value=2.2e+02 Score=25.46 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 207 ~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 286 (371)
+++.++.+.+.+... ++++ |+..+..+++..|++++..-..-.. .=...+++....|+..+.++.+.
T Consensus 4 ~~~~l~~l~~~g~dg-i~v~--~~g~~~~~k~~~~~~~i~~~~~~nv---------~N~~s~~~~~~~G~~~i~ls~EL- 70 (233)
T PF01136_consen 4 LEKYLDKLKELGVDG-ILVS--NPGLLELLKELGPDLKIIADYSLNV---------FNSESARFLKELGASRITLSPEL- 70 (233)
T ss_pred HHHHHHHHHhCCCCE-EEEc--CHHHHHHHHHhCCCCcEEEecCccC---------CCHHHHHHHHHcCCCEEEECccC-
Confidence 344555566666553 5554 7889999999989888876543211 01234566777788888776653
Q ss_pred cCChHHHHHHHHhC----CeEEEec
Q 017440 287 FKNPGAIKKIKEAK----LCLVSYG 307 (371)
Q Consensus 287 ~~~~~~v~~~~~~G----l~v~~wg 307 (371)
+-+.++.+.+.. +.+.++|
T Consensus 71 --~~~ei~~i~~~~~~~~~Ev~v~G 93 (233)
T PF01136_consen 71 --SLEEIKEIAENSPGVPLEVIVHG 93 (233)
T ss_pred --CHHHHHHHHHhCCCCeEEEEEeC
Confidence 555555555442 4556664
No 197
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.93 E-value=2.3e+02 Score=25.64 Aligned_cols=69 Identities=13% Similarity=0.030 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
..+..+.+...|++.+.++... .-.+-++++.+.+. +++|++-|-+.+.+++..++...|+|+++.-++
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 3445566677888876654211 01234667777655 788888888999999999874349999998655
No 198
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=45.88 E-value=1.3e+02 Score=26.40 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCceEecc-----c-ccccCChHHHHHHHHh-CCeEEE-ecccCChHHHHHHHHhcCceEEEe
Q 017440 264 LDEAIKVCLAGGLQGIVSE-----V-RAIFKNPGAIKKIKEA-KLCLVS-YGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~-----~-~~~~~~~~~v~~~~~~-Gl~v~~-wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.+.++.+...|++.++.. + .......+.++.+++. ...+.+ . .+++...+.+.+.+.|+|||+.
T Consensus 13 ~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~l-m~~~~~~~~~~~~~~gadgv~v 85 (210)
T TIGR01163 13 LGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHL-MVENPDRYIEDFAEAGADIITV 85 (210)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe-eeCCHHHHHHHHHHcCCCEEEE
Confidence 4455566666777776653 1 1222456677777754 234322 2 3444454444444678887544
No 199
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=45.57 E-value=1.9e+02 Score=27.16 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh--CCeEEEec
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA--KLCLVSYG 307 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~--Gl~v~~wg 307 (371)
.+.+..+|+..|+.+++.-+. +++++.+ +...|++++.+.--..--..+.++.+++. .+++.+-|
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------------t~eea~~-A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsG 237 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------------SLEEALA-AAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAG 237 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------------CHHHHHH-HHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEEC
Confidence 456777777777655544332 3455444 44678888775421110012344444443 36788776
Q ss_pred ccCChHHHHHHHHhcCceEEEeCCh
Q 017440 308 ELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 308 tvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
-++ .+.+..+. +.|||+|.+-.+
T Consensus 238 GI~-~~ni~~~~-~~Gvd~I~vsai 260 (272)
T cd01573 238 GIN-IENAAAYA-AAGADILVTSAP 260 (272)
T ss_pred CCC-HHHHHHHH-HcCCcEEEEChh
Confidence 564 45555664 699999977654
No 200
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=45.36 E-value=1.8e+02 Score=26.93 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=31.2
Q ss_pred HHHHhCCCceEecccccccCCh----HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~----~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
+.+...|++.+.++.++-..+. .++..++..|...++=-..+++..+.+.+ +.|++||+.=+.+
T Consensus 34 e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~L-D~Ga~giivP~v~ 101 (256)
T PRK10558 34 EVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLL-DIGFYNFLIPFVE 101 (256)
T ss_pred HHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHh-CCCCCeeeecCcC
Confidence 4444555666655554432222 34445555565544431234455555554 5666666544433
No 201
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=45.29 E-value=3.2e+02 Score=27.05 Aligned_cols=101 Identities=9% Similarity=0.156 Sum_probs=60.2
Q ss_pred CeEEecCC--HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh
Q 017440 222 PIMFSSFQ--PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA 299 (371)
Q Consensus 222 ~v~i~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~ 299 (371)
.+++.+.+ .+-++.+++..|.+...|-+.. ++....++.....|+. +- . .++.-++.+.++
T Consensus 14 p~yv~d~~~i~~~~~~l~~~lp~~~~~YAvKa----------N~~~~il~~l~~~G~g-~D--v----aS~gEl~~al~~ 76 (394)
T cd06831 14 AFFVGDLGKIVKKHSQWQTVMAQIKPFYTVRC----------NSTPAVLEILAALGTG-FA--C----SSKNEMALVQEL 76 (394)
T ss_pred CeEEEEHHHHHHHHHHHHHHCCCCeEEeeecc----------CCCHHHHHHHHHcCCC-eE--e----CCHHHHHHHHhc
Confidence 45554433 1234445555666555444432 3344556666666642 21 1 255567777787
Q ss_pred CCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 300 KLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 300 Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
|.. +..-|...+.++++.++ +.||..|..|...++.++.+
T Consensus 77 G~~~~~Iif~gp~K~~~~l~~a~-~~Gv~~i~vDS~~El~~i~~ 119 (394)
T cd06831 77 GVSPENIIYTNPCKQASQIKYAA-KVGVNIMTCDNEIELKKIAR 119 (394)
T ss_pred CCCcCCEEEeCCCCCHHHHHHHH-HCCCCEEEECCHHHHHHHHH
Confidence 743 33333666778887775 68998899999999988764
No 202
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.22 E-value=2.4e+02 Score=25.74 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=46.4
Q ss_pred cHHHHHHHHHhCCCceEeccc--c-c--ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEV--R-A--IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~--~-~--~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+..+..+.+...|+..+.... . . .-.+-++++.+.+. +++|.+-|-+.+.+++..++...|++|++.-.
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~ 228 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAAS 228 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhH
Confidence 345556667778887654421 1 0 01234666666654 68999998899999998886446999998844
No 203
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=45.05 E-value=2.4e+02 Score=25.51 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=44.4
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
++.+...|++.++.+. .++++++.++++|+.+..= +.++.|+...+ ++|.+. +=-+|...
T Consensus 78 ~~~a~~aGa~fiVsP~----~~~ev~~~a~~~~ip~~PG--~~TptEi~~Al-e~G~~~-lK~FPa~~ 137 (211)
T COG0800 78 ARQAIAAGAQFIVSPG----LNPEVAKAANRYGIPYIPG--VATPTEIMAAL-ELGASA-LKFFPAEV 137 (211)
T ss_pred HHHHHHcCCCEEECCC----CCHHHHHHHHhCCCcccCC--CCCHHHHHHHH-HcChhh-eeecCccc
Confidence 4556788988877543 3899999999999999874 66778877775 799884 44555443
No 204
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=44.72 E-value=38 Score=31.76 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=30.3
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCC
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDN 111 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~ 111 (371)
...|--.++...++.|+.++|+||+.. ++.+.++|..
T Consensus 33 ~~~nQ~~si~~QL~~GiR~l~ld~~~~-~~~~~lcH~~ 69 (270)
T cd08588 33 LAPNQEDDITKQLDDGVRGLMLDIHDA-NGGLRLCHSV 69 (270)
T ss_pred cccccCCCHHHHHHhCcceEeeeEEec-CCCEEEECCC
Confidence 345556778899999999999999995 7779999953
No 205
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.49 E-value=2.7e+02 Score=26.11 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCC-CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh------CCe
Q 017440 230 PDAALLIRKLQST-YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA------KLC 302 (371)
Q Consensus 230 ~~~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~------Gl~ 302 (371)
.+.++.+|+..|. .++..=. .+++++.+. ...|++.|.++- .+++.++++-+. +..
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv------------~tleea~~A-~~~GaDiI~LDn----~~~e~l~~~v~~~~~~~~~~~ 231 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIEC------------ESLEEAKNA-MNAGADIVMCDN----MSVEEIKEVVAYRNANYPHVL 231 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEe------------CCHHHHHHH-HHcCCCEEEECC----CCHHHHHHHHHHhhccCCCeE
Confidence 4567777777774 3333211 356666554 468899887642 255555554442 345
Q ss_pred EEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 303 LVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 303 v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
+-+-|-+ +++....+. ..|||.|.+-.+.
T Consensus 232 ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~ 260 (273)
T PRK05848 232 LEASGNI-TLENINAYA-KSGVDAISSGSLI 260 (273)
T ss_pred EEEECCC-CHHHHHHHH-HcCCCEEEeChhh
Confidence 7777767 566777765 6999999886654
No 206
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.47 E-value=20 Score=28.12 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=25.4
Q ss_pred hHHHHHHHHhCCeEEEecccCC---hHHHHHHHHhcCceEEEeCCh
Q 017440 290 PGAIKKIKEAKLCLVSYGELNN---VPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~---~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+.++.++++|++++.- |=|. .+++.+.+..+|++ +-.|..
T Consensus 20 ~e~l~~L~~~g~~~~~l-TNns~~s~~~~~~~L~~~Gi~-~~~~~i 63 (101)
T PF13344_consen 20 VEALDALRERGKPVVFL-TNNSSRSREEYAKKLKKLGIP-VDEDEI 63 (101)
T ss_dssp HHHHHHHHHTTSEEEEE-ES-SSS-HHHHHHHHHHTTTT---GGGE
T ss_pred HHHHHHHHHcCCCEEEE-eCCCCCCHHHHHHHHHhcCcC-CCcCEE
Confidence 57899999999998877 5432 34444444578877 444443
No 207
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.47 E-value=2.9e+02 Score=27.18 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc---cc---cCChHHHHHHHH-h
Q 017440 227 SFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR---AI---FKNPGAIKKIKE-A 299 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~---~~~~~~v~~~~~-~ 299 (371)
+++++.++.+++..+. |+. ..+. .+.++ ...+...|+++|.+... .+ ..+-+.+.++.+ .
T Consensus 222 ~~~w~~i~~ir~~~~~-pvi--iKgV---------~~~ed-a~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~ 288 (361)
T cd04736 222 SFNWQDLRWLRDLWPH-KLL--VKGI---------VTAED-AKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT 288 (361)
T ss_pred cCCHHHHHHHHHhCCC-CEE--EecC---------CCHHH-HHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh
Confidence 5788999999997654 433 2221 12333 35567789998764321 11 112234444444 4
Q ss_pred CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 300 KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 300 Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
++.|++-|-+.+..++.+.+ .+|++++..-+|-..
T Consensus 289 ~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~ 323 (361)
T cd04736 289 YKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLY 323 (361)
T ss_pred CCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 78899888788888888886 799999999998764
No 208
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=44.34 E-value=1.2e+02 Score=29.50 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCCCeEEecCCHHHHHHH-HHHCCCCCeEEEcCCCCcc-cCCCCcccHHHHHHHHHhCCCceEecccccc
Q 017440 209 AILKVVFEHAQGRPIMFSSFQPDAALLI-RKLQSTYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI 286 (371)
Q Consensus 209 ~vl~~l~~~~~~~~v~i~Sf~~~~l~~l-~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 286 (371)
.+++.+.+.+.. .+.. ....++.. +....++|+.+-.+..+.. +.+.....+...++.|.++|+++|....+.-
T Consensus 95 ~~i~~a~~~g~d--Av~~--~~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G 170 (348)
T PRK09250 95 NIVKLAIEAGCN--AVAS--TLGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG 170 (348)
T ss_pred HHHHHHHhcCCC--EEEe--CHHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC
Confidence 344555454432 2332 25555553 2233457765544444332 2221111222335667788998887654321
Q ss_pred --------cCChHHHHHHHHhCCeEEEecc-----cCCh-------HHHH---HHHHhcCceEEEeCChHH
Q 017440 287 --------FKNPGAIKKIKEAKLCLVSYGE-----LNNV-------PEVV---YMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 287 --------~~~~~~v~~~~~~Gl~v~~wgt-----vn~~-------~~~~---~l~~~~GVdgIiTD~p~~ 334 (371)
-.-.++++++|+.|+.+.+|.. +.++ +.+. ++..++|+|.|=|++|..
T Consensus 171 s~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 171 SEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 0012577899999999998831 1121 2222 223369999999999953
No 209
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=44.33 E-value=85 Score=28.09 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=56.6
Q ss_pred cCCCCeEEec--------CCHHHHHHHHHHCCCCCeEEEcCCCCc--ccCCCCcccHHHHHHHHHhCCCceEeccccc--
Q 017440 218 AQGRPIMFSS--------FQPDAALLIRKLQSTYPVFFLTNGGAQ--TCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-- 285 (371)
Q Consensus 218 ~~~~~v~i~S--------f~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 285 (371)
+..+|+-+++ .+...++.+++ ..++|+..+..+... .|.+.....+.+.+..++..|+++++.-.-.
T Consensus 19 ~GAdRiELc~~l~~GGlTPS~g~i~~~~~-~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d 97 (201)
T PF03932_consen 19 GGADRIELCSNLEVGGLTPSLGLIRQARE-AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTED 97 (201)
T ss_dssp TT-SEEEEEBTGGGT-B---HHHHHHHHH-HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETT
T ss_pred cCCCEEEECCCccCCCcCcCHHHHHHHHh-hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC
Confidence 3456788765 55677777776 467898888765421 1111111123456677889999998865311
Q ss_pred ccCChHHHHHHHH--hCCeEEEec---ccCChHHHHHHHHhcCceEEEeC
Q 017440 286 IFKNPGAIKKIKE--AKLCLVSYG---ELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 286 ~~~~~~~v~~~~~--~Gl~v~~wg---tvn~~~~~~~l~~~~GVdgIiTD 330 (371)
-.++.+..+.+-+ .|+++.... -+.|+.+....+.++|++.|.|-
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTS 147 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTS 147 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEES
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECC
Confidence 1234443333322 377776552 23344443333347899999984
No 210
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.20 E-value=1.3e+02 Score=27.61 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhCCCceEecccccccCC----hHHHHHHHHhCCeEEEeccc--------CChHHHH----HHHHhcCceE
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCLVSYGEL--------NNVPEVV----YMQRFMGIEG 326 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~~~~Gl~v~~wgtv--------n~~~~~~----~l~~~~GVdg 326 (371)
.+.+.++.|+.+|++.|-++...+-++ .++|+.++++|++|.+=--. -+++++. +.+ +.|++.
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~L-eAGA~~ 150 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDL-EAGADY 150 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHH-HCCCcE
Confidence 467788999999999887665443333 36899999999998752001 1223332 223 689999
Q ss_pred EEeCC
Q 017440 327 VIVDL 331 (371)
Q Consensus 327 IiTD~ 331 (371)
||.+-
T Consensus 151 ViiEa 155 (237)
T TIGR03849 151 VIIEG 155 (237)
T ss_pred EEEee
Confidence 98876
No 211
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=44.15 E-value=1.8e+02 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=29.0
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
-++++.+|++++...+| |.+.+++.++. ..|+|.|..
T Consensus 146 vemlr~A~~k~l~t~~y--V~s~~eAqa~~-~aGadiiv~ 182 (276)
T COG5564 146 VEMLREAHAKDLLTTPY--VFSFEEAQAMT-KAGADIIVA 182 (276)
T ss_pred HHHHHHHHhccccccce--ecCHHHHHHHH-HcCcceeee
Confidence 47899999999998888 67778877775 688775543
No 212
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=44.09 E-value=68 Score=27.06 Aligned_cols=78 Identities=14% Similarity=0.268 Sum_probs=47.4
Q ss_pred cHHHHHHHHHhCCCceEecccc---cccCChHHHHHHHHhCCe-E--EEecccCChHHHHHHHHhcCceEEEe---CChH
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR---AIFKNPGAIKKIKEAKLC-L--VSYGELNNVPEVVYMQRFMGIEGVIV---DLVS 333 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~v~~~~~~Gl~-v--~~wgtvn~~~~~~~l~~~~GVdgIiT---D~p~ 333 (371)
+..+++..|.....+.|.++.. +...-+.+++.++++|.. + ++=| +-.+++...+ +++|+|+|++ +-.+
T Consensus 51 tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GG-vip~~d~~~l-~~~G~~~if~pgt~~~~ 128 (143)
T COG2185 51 TPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGG-VIPPGDYQEL-KEMGVDRIFGPGTPIEE 128 (143)
T ss_pred CHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecC-ccCchhHHHH-HHhCcceeeCCCCCHHH
Confidence 3466666665666655554321 222357899999999965 3 3333 3345556666 5799999985 4445
Q ss_pred HHHHHHHhh
Q 017440 334 EITEAVSDF 342 (371)
Q Consensus 334 ~l~~~l~~~ 342 (371)
.+..++.+.
T Consensus 129 ~~~~v~~~l 137 (143)
T COG2185 129 ALSDLLTRL 137 (143)
T ss_pred HHHHHHHHH
Confidence 555555444
No 213
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.08 E-value=1.3e+02 Score=30.80 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc-----c-cCC----------hHHH
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-----I-FKN----------PGAI 293 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~-~~~----------~~~v 293 (371)
.+.++.+|+.+|+.+++. +. . .+.+.+ ..+...|+++|-+.... . ..+ .+..
T Consensus 256 ~~~i~~ik~~~p~~~v~a---gn------v--~t~~~a-~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~ 323 (479)
T PRK07807 256 LEALRAVRALDPGVPIVA---GN------V--VTAEGT-RDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECA 323 (479)
T ss_pred HHHHHHHHHHCCCCeEEe---ec------c--CCHHHH-HHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHH
Confidence 456777888777765543 11 0 233333 34456788877521110 0 000 1344
Q ss_pred HHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 294 KKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 294 ~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+++.|.+|.+=|-+.++.++.+.+ .+|+++++...
T Consensus 324 ~~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~ 360 (479)
T PRK07807 324 AAARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGS 360 (479)
T ss_pred HHHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccH
Confidence 45556789999988899999999987 69999998654
No 214
>PF12957 DUF3846: Domain of unknown function (DUF3846); InterPro: IPR024559 A family of uncharacterised proteins found by clustering human gut metagenomic sequences []. In a few cases it is found fused to the C terminus of ArdA (Pfam:PF07275). ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification [].
Probab=43.72 E-value=47 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
..+||+.++++++ ...||+ |.+ .|+..++++|+-
T Consensus 15 ~i~~~l~~lq~~V---gG~ie~-v~l-~~~~~l~~neeG 48 (95)
T PF12957_consen 15 EIDNSLEALQKLV---GGYIEV-VYL-DDGVVLYCNEEG 48 (95)
T ss_pred ecCCCHHHHHHHH---CCeEEE-Eec-CCCEEEEEeCcc
Confidence 5788999999999 457887 666 677888888765
No 215
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=43.57 E-value=37 Score=25.02 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=21.6
Q ss_pred hCCCceEecccccccCChHHHHHHHHhCCeEEEe
Q 017440 273 AGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 273 ~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
..+.+.+.++... .+++.|+.+|++|..|++|
T Consensus 24 ~~~~~v~~iD~~~--~~~~~I~~L~~~G~~vicY 55 (74)
T PF03537_consen 24 DPDVDVVVIDLFD--FSKEEIARLKAQGKKVICY 55 (74)
T ss_dssp TSS-SEEEE-SBS----HHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEECCcc--CCHHHHHHHHHCCCEEEEE
Confidence 3556666666544 3789999999999999998
No 216
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.36 E-value=2.4e+02 Score=25.16 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred cHHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+..+.++.....|++.+...... .-.+-++++.+.+. .+++.+-|-+++.+++..++ ..|+||++.-.
T Consensus 147 ~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~-~~Ga~gv~vg~ 220 (234)
T cd04732 147 SLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALK-ELGVAGVIVGK 220 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCCCCEEEEeH
Confidence 34455666677788776544210 11234677777765 68888887899999998886 58999998744
No 217
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.34 E-value=96 Score=28.10 Aligned_cols=57 Identities=7% Similarity=-0.036 Sum_probs=31.8
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.+...+++|||+..... ....++.....+..+.+- +.++.++..+.. +.|+|.|.-
T Consensus 81 dlA~~~~adGVHLg~~d~--~~~~~r~~~~~~~iiG~s-~~~s~~~a~~A~-~~gaDYv~~ 137 (221)
T PRK06512 81 RIAGRVKADGLHIEGNLA--ALAEAIEKHAPKMIVGFG-NLRDRHGAMEIG-ELRPDYLFF 137 (221)
T ss_pred HHHHHhCCCEEEECcccc--CHHHHHHhcCCCCEEEec-CCCCHHHHHHhh-hcCCCEEEE
Confidence 556677888888764321 222222222233445554 466666665553 588888854
No 218
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.33 E-value=2.9e+02 Score=26.10 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-------HHHH-HHH--HHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhC
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-------DAAL-LIR--KLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAG 274 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-------~~l~-~l~--~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (371)
.++..+++.-++. ..+++++.... +.+. .++ ....++|+++=.+-.. ++ +.+..|...
T Consensus 29 e~~~avi~AAe~~--~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~---------~~-e~i~~Ai~~ 96 (283)
T PRK07998 29 ETTISILNAIERS--GLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGK---------TF-EDVKQAVRA 96 (283)
T ss_pred HHHHHHHHHHHHh--CCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCC---------CH-HHHHHHHHc
Confidence 3556666665554 45677765221 1111 111 1234678887655431 23 334556778
Q ss_pred CCceEeccccc------ccCChHHHHHHHHhCCeE-EEeccc--------------CChHHHHHHHHhcCceEEEeCC
Q 017440 275 GLQGIVSEVRA------IFKNPGAIKKIKEAKLCL-VSYGEL--------------NNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 275 ~~~~v~~~~~~------~~~~~~~v~~~~~~Gl~v-~~wgtv--------------n~~~~~~~l~~~~GVdgIiTD~ 331 (371)
|+++|..+.+. ...+.+.++.+|..|+.| .=+|.+ -+++++.++..+.|||.+-...
T Consensus 97 GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvai 174 (283)
T PRK07998 97 GFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSI 174 (283)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhc
Confidence 99888876443 234678999999999877 222222 2677777877778999887766
No 219
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=43.32 E-value=1.9e+02 Score=26.03 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCC---CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEec
Q 017440 231 DAALLIRKLQST---YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYG 307 (371)
Q Consensus 231 ~~l~~l~~~~p~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wg 307 (371)
..+..+++..|. +|..++.... .+.....+..++.++..|+.|+....--.--...+-.+++++|+.+..-.
T Consensus 81 ~i~emvk~ar~~gvt~PIiLmgYYN-----PIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLv 155 (268)
T KOG4175|consen 81 SIIEMVKEARPQGVTCPIILMGYYN-----PILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLV 155 (268)
T ss_pred HHHHHHHHhcccCcccceeeeeccc-----HHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEee
Confidence 355666666554 5655544321 11112346677888888887765321100012347788999999887662
Q ss_pred ccCChHH
Q 017440 308 ELNNVPE 314 (371)
Q Consensus 308 tvn~~~~ 314 (371)
+..+.++
T Consensus 156 aPsTtde 162 (268)
T KOG4175|consen 156 APSTTDE 162 (268)
T ss_pred CCCChHH
Confidence 3333333
No 220
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=43.10 E-value=2.9e+02 Score=26.58 Aligned_cols=90 Identities=13% Similarity=0.242 Sum_probs=52.3
Q ss_pred HHHHHHHCC-CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCC--eEEEe-cc
Q 017440 233 ALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL--CLVSY-GE 308 (371)
Q Consensus 233 l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl--~v~~w-gt 308 (371)
++.+++..+ +..+.+.+... .....++.....|+ ++.+ .+..-++.+++.|. ...++ +.
T Consensus 15 ~~~l~~~~~~~~~i~~avKan----------~~~~i~~~l~~~G~-g~~v------as~~E~~~~~~~G~~~~~iv~~gp 77 (368)
T cd06810 15 YAALKEALPSGVKLFYAVKAN----------PNPHVLRTLAEAGT-GFDV------ASKGELALALAAGVPPERIIFTGP 77 (368)
T ss_pred HHHHHHhCCCCCeEEEEEccC----------CCHHHHHHHHHcCC-cEEE------eCHHHHHHHHHcCCCHHHEEEcCC
Confidence 444555554 44455544332 22344555555665 4432 25666777788886 33333 24
Q ss_pred cCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 309 LNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 309 vn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
..+.+++..++ +.|+..+..|.++++.++.+
T Consensus 78 ~~~~~~l~~~~-~~~~~~~~vds~~el~~l~~ 108 (368)
T cd06810 78 AKSVSEIEAAL-ASGVDHIVVDSLDELERLNE 108 (368)
T ss_pred CCCHHHHHHHH-HCCCCEEEeCCHHHHHHHHH
Confidence 44556777775 68877788899988876643
No 221
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.89 E-value=1.6e+02 Score=26.21 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=51.8
Q ss_pred cHHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhC---CeEEEecccCChHHHHHHHHhcCceEEE-----
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAK---LCLVSYGELNNVPEVVYMQRFMGIEGVI----- 328 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~G---l~v~~wgtvn~~~~~~~l~~~~GVdgIi----- 328 (371)
.+.+.++.+...|++.+|.+.- .+...++.++.+++.- +.|+.. +.++..+...+.+.|+|.|+
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLM--v~~P~~~i~~~~~~g~~~i~~H~E~ 90 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLM--VENPERYIEEFAEAGADYITFHAEA 90 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEE--SSSGGGHHHHHHHHT-SEEEEEGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEee--eccHHHHHHHHHhcCCCEEEEcccc
Confidence 5777788888899998887631 1234689999998875 445665 56676665555689999775
Q ss_pred eCChHHHHHHHHhh
Q 017440 329 VDLVSEITEAVSDF 342 (371)
Q Consensus 329 TD~p~~l~~~l~~~ 342 (371)
++.+..+.+.+++.
T Consensus 91 ~~~~~~~i~~ik~~ 104 (201)
T PF00834_consen 91 TEDPKETIKYIKEA 104 (201)
T ss_dssp TTTHHHHHHHHHHT
T ss_pred hhCHHHHHHHHHHh
Confidence 36666776666664
No 222
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=42.36 E-value=82 Score=27.00 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=37.7
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+.+...|++++++.... .....++.++..+..+.+- +++..+..+.. ..|+|.|+-.
T Consensus 66 ~~a~~~g~~~vh~~~~~--~~~~~~~~~~~~~~~~g~~--~~t~~~~~~~~-~~g~d~i~~~ 122 (196)
T cd00564 66 DLALAVGADGVHLGQDD--LPVAEARALLGPDLIIGVS--THSLEEALRAE-ELGADYVGFG 122 (196)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHHcCCCCEEEee--CCCHHHHHHHh-hcCCCEEEEC
Confidence 44567788888766432 2445666666667777764 46667776664 6899999643
No 223
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=42.32 E-value=2.6e+02 Score=28.50 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc--------cc------ccCC--hHHHH
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV--------RA------IFKN--PGAIK 294 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~------~~~~--~~~v~ 294 (371)
+.++.+|+.+|++++.. +.. .+.+ ....+...|+++|.+.. +. ...+ -+..+
T Consensus 255 ~~i~~i~~~~~~~~vi~--g~~---------~t~~-~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVA--GNV---------VSAE-GVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred HHHHHHHHHCCCCeEEE--ecc---------CCHH-HHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 46778888888887765 111 1233 33445577888875221 10 0001 14556
Q ss_pred HHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 295 KIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 295 ~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+++.|+.|.+=|-++++.++.+.+ .+|++.++.-..
T Consensus 323 ~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~ 359 (475)
T TIGR01303 323 EARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSW 359 (475)
T ss_pred HHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechh
Confidence 6688899999998899999999987 699999987653
No 224
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.13 E-value=1.1e+02 Score=27.58 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=33.3
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+.+...+++|||+....+ ....++.+...+..+.+ ++++.++..... ..|+|.|+--
T Consensus 73 ~lA~~~~adGVHlg~~d~--~~~~~r~~~~~~~~iG~--S~H~~~e~~~A~-~~gaDYi~lg 129 (211)
T PRK03512 73 RLAIKHQAYGVHLGQEDL--ETADLNAIRAAGLRLGV--STHDDMEIDVAL-AARPSYIALG 129 (211)
T ss_pred HHHHHcCCCEEEcChHhC--CHHHHHHhcCCCCEEEE--eCCCHHHHHHHh-hcCCCEEEEC
Confidence 456677888998765432 22333333223343443 467777776664 6899988643
No 225
>PLN02334 ribulose-phosphate 3-epimerase
Probab=42.10 E-value=2.1e+02 Score=25.83 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCceEeccccc------ccCChHHHHHHHHhC-CeEEEecccCChHHHHHHHHhcCceEE
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA------IFKNPGAIKKIKEAK-LCLVSYGELNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~v~~~~~~G-l~v~~wgtvn~~~~~~~l~~~~GVdgI 327 (371)
+.+.++.+...|++.++++... ....++.++.+++.- ..+.+.-.++++.+....+.+.|+|+|
T Consensus 22 l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v 92 (229)
T PLN02334 22 LAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIF 92 (229)
T ss_pred HHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEE
Confidence 3444555666677666654321 112346777777663 222222246666665555456788877
No 226
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=42.07 E-value=2.7e+02 Score=25.32 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhC-CeEEEecccCChHHHHHHHHhcCceEEE-----eCC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAK-LCLVSYGELNNVPEVVYMQRFMGIEGVI-----VDL 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~G-l~v~~wgtvn~~~~~~~l~~~~GVdgIi-----TD~ 331 (371)
+.+-++.....|++.+|.+.- ++..-+..++.+++.. +.+-+.--|.+++.+...+.+.|+|.|+ +.+
T Consensus 18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~ 97 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEH 97 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcC
Confidence 555667777888888887631 2334688999999974 5554443477777766555679999886 667
Q ss_pred hHHHHHHHHhh
Q 017440 332 VSEITEAVSDF 342 (371)
Q Consensus 332 p~~l~~~l~~~ 342 (371)
+.++.+.+++.
T Consensus 98 ~~r~i~~Ik~~ 108 (220)
T COG0036 98 IHRTIQLIKEL 108 (220)
T ss_pred HHHHHHHHHHc
Confidence 77887887775
No 227
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=42.07 E-value=3e+02 Score=26.70 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhCC---eEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 289 NPGAIKKIKEAKL---CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 289 ~~~~v~~~~~~Gl---~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
+..-++.+++.|. .+...+.+.+.+++.+++ +.|+..+..|.++++..+.+
T Consensus 61 S~~E~~~~~~~G~~~~~I~~~~~~k~~~~l~~a~-~~g~~~i~vds~~el~~l~~ 114 (382)
T cd06839 61 SAGELALALEAGVPPEKILFAGPGKSDAELRRAI-EAGIGTINVESLEELERIDA 114 (382)
T ss_pred CHHHHHHHHHcCCCHHHEEEeCCCCCHHHHHHHH-HCCCCEEEECCHHHHHHHHH
Confidence 5666777888886 456554455777777775 68987799999999887754
No 228
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=41.93 E-value=1.5e+02 Score=26.91 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHhC--CeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 264 LDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEAK--LCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~G--l~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.+.++.+...|++.+|.+.- .....++.++++++.+ +.+-+..-++++....+.+.+.|+|.|+.
T Consensus 21 l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 21 LADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTF 94 (228)
T ss_pred HHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEE
Confidence 445566666777777765521 1123567788887765 33333312466666555445678776643
No 229
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=41.86 E-value=2.5e+02 Score=27.31 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=28.9
Q ss_pred ChHHHHHHHHhC-CeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 289 NPGAIKKIKEAK-LCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 289 ~~~~v~~~~~~G-l~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+-+.++++++.. ++|.+= .+.+.+++..+. +.|||+|+.-
T Consensus 201 ~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~vs 241 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIVLS 241 (344)
T ss_pred CHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEEEE
Confidence 345677777654 677777 577788887775 7999998743
No 230
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.84 E-value=2.3e+02 Score=28.34 Aligned_cols=90 Identities=12% Similarity=0.180 Sum_probs=55.6
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc--------c--cCCh--H----HHH
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--------I--FKNP--G----AIK 294 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~--~~~~--~----~v~ 294 (371)
+.++.+++..|+.++.. ..- .+.+.+ ..+...|+++|...+.. . .-.| . ..+
T Consensus 183 ~~v~~ik~~~p~~~vi~--g~V---------~T~e~a-~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~ 250 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIA--GNI---------VTKEAA-LDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYE 250 (404)
T ss_pred HHHHHHHhhCCCCcEEE--Eec---------CCHHHH-HHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHH
Confidence 56777888777766432 110 133433 44556788887643210 0 0012 1 223
Q ss_pred HHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 295 KIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 295 ~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
.+++.+++|++=|-+.++.++.+.+ .+|+|+|+.-.+-
T Consensus 251 ~~~~~~vpVIAdGGI~~~~Di~KAL-alGA~aVmvGs~~ 288 (404)
T PRK06843 251 VCKNTNICIIADGGIRFSGDVVKAI-AAGADSVMIGNLF 288 (404)
T ss_pred HHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEccee
Confidence 3345689999988899999999987 7999999876654
No 231
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=41.82 E-value=1.4e+02 Score=27.56 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=34.3
Q ss_pred HHHHhCCCceEecccccccCCh----HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~----~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
+.+...|++.+.++.++-..+. .++..++..|...++=-.-+++..+.+.+ +.|++||+.=..+.
T Consensus 27 e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~L-D~Ga~gIivP~v~t 95 (249)
T TIGR03239 27 EVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLL-DIGFYNFLIPFVES 95 (249)
T ss_pred HHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHh-cCCCCEEEecCcCC
Confidence 4444566666666655433332 34555566666554431234555566654 67777776544333
No 232
>PRK15447 putative protease; Provisional
Probab=41.56 E-value=2.5e+02 Score=26.60 Aligned_cols=76 Identities=9% Similarity=-0.040 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHhCCCceEecccccc-----cC---ChHHHHHHHHhCCeEEEeccc---CChHHH---HHHHHhcCceEE
Q 017440 262 SSLDEAIKVCLAGGLQGIVSEVRAI-----FK---NPGAIKKIKEAKLCLVSYGEL---NNVPEV---VYMQRFMGIEGV 327 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~---~~~~v~~~~~~Gl~v~~wgtv---n~~~~~---~~l~~~~GVdgI 327 (371)
+++......+...|++.|.+..... +. -++.++.+|++|.+|++- +. ....++ .+++ +.|+|+|
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva-~p~i~~~~~e~~~l~~~l-~~~~~~v 92 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLS-TLALVEAPSELKELRRLV-ENGEFLV 92 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEE-ecccccCHHHHHHHHHHH-hcCCCEE
Confidence 4555555555566888877653321 11 136889999999999874 32 223333 3343 5799999
Q ss_pred EeCChHHHHHHH
Q 017440 328 IVDLVSEITEAV 339 (371)
Q Consensus 328 iTD~p~~l~~~l 339 (371)
+..++..+.-+.
T Consensus 93 ~v~d~g~l~~~~ 104 (301)
T PRK15447 93 EANDLGAVRLLA 104 (301)
T ss_pred EEeCHHHHHHHH
Confidence 999999876443
No 233
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=41.36 E-value=89 Score=27.23 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.+...|++|+++.... .....++.....+..+.+ ++.+.++..+.. +.|+|.|..
T Consensus 67 ~la~~~g~~GvHl~~~~--~~~~~~r~~~~~~~~ig~--s~h~~~e~~~a~-~~g~dyi~~ 122 (196)
T TIGR00693 67 DLALALGADGVHLGQDD--LPASEARALLGPDKIIGV--STHNLEELAEAE-AEGADYIGF 122 (196)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHhcCCCCEEEE--eCCCHHHHHHHh-HcCCCEEEE
Confidence 45667788888876443 244445555445555544 577777776664 689999873
No 234
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=41.30 E-value=91 Score=27.40 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.+...|+++++..... .....++.++..|..+.+- +++..+..+.. ..|+|.|..
T Consensus 75 ~~a~~~gad~vh~~~~~--~~~~~~~~~~~~~~~~g~~--~~t~~e~~~a~-~~gaD~v~~ 130 (212)
T PRK00043 75 DLALAVGADGVHLGQDD--LPVADARALLGPDAIIGLS--THTLEEAAAAL-AAGADYVGV 130 (212)
T ss_pred HHHHHcCCCEEecCccc--CCHHHHHHHcCCCCEEEEe--CCCHHHHHHHh-HcCCCEEEE
Confidence 45667788888876543 2345566666778877775 45667776664 689999974
No 235
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.13 E-value=2.2e+02 Score=27.48 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=57.9
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHH---HHHHHhCCCceEecccccc---c-C-------------
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEA---IKVCLAGGLQGIVSEVRAI---F-K------------- 288 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~---~-~------------- 288 (371)
.++++.+|+.. +++++++-+......... .+..++ ++.....|++.+.++.... . .
T Consensus 203 ~EiI~aIR~avG~d~~v~vris~~~~~~~g---~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 279 (338)
T cd04733 203 LEIYDAIRAAVGPGFPVGIKLNSADFQRGG---FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAY 279 (338)
T ss_pred HHHHHHHHHHcCCCCeEEEEEcHHHcCCCC---CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchh
Confidence 46777788766 457777655321000000 123333 3444556777776432110 0 0
Q ss_pred ChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 289 NPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 289 ~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
..+..+.++++ +++|.+=|.+++.+++.+++.+-++|.|.-=++-..
T Consensus 280 ~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 280 FLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 01455566654 778876667889999999874445999877665444
No 236
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=41.07 E-value=59 Score=25.98 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc
Q 017440 206 ALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA 285 (371)
Q Consensus 206 ~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 285 (371)
..-++++.+++.+.. -+.+.|-. +....-.... ...+...+... ...+.+.+..++.++..+++.+++.|..
T Consensus 13 ia~r~~ra~r~~Gi~-tv~v~s~~-d~~s~~~~~a---d~~~~~~~~~~---~~~yl~~e~I~~ia~~~g~~~i~pGyg~ 84 (110)
T PF00289_consen 13 IAVRIIRALRELGIE-TVAVNSNP-DTVSTHVDMA---DEAYFEPPGPS---PESYLNIEAIIDIARKEGADAIHPGYGF 84 (110)
T ss_dssp HHHHHHHHHHHTTSE-EEEEEEGG-GTTGHHHHHS---SEEEEEESSSG---GGTTTSHHHHHHHHHHTTESEEESTSST
T ss_pred HHHHHHHHHHHhCCc-ceeccCch-hccccccccc---ccceecCcchh---hhhhccHHHHhhHhhhhcCcccccccch
Confidence 355677778887755 35555533 3322222221 22232222111 0112357888899999999999999888
Q ss_pred ccCChHHHHHHHHhCCeE
Q 017440 286 IFKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 286 ~~~~~~~v~~~~~~Gl~v 303 (371)
+-.++++.+.+.++|+.+
T Consensus 85 lse~~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 85 LSENAEFAEACEDAGIIF 102 (110)
T ss_dssp TTTHHHHHHHHHHTT-EE
T ss_pred hHHHHHHHHHHHHCCCEE
Confidence 777889999999999865
No 237
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.93 E-value=2.8e+02 Score=25.22 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=46.2
Q ss_pred cHHHHHHHHHhCCCceEe-ccccc----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 263 SLDEAIKVCLAGGLQGIV-SEVRA----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~-~~~~~----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
++.+.++.....++..+. .+... .-.+-++++.+.+. +++|.+-|-+.+.+++..++ ++|+++++.=
T Consensus 149 ~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivG 221 (234)
T PRK13587 149 NLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAAIIG 221 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEh
Confidence 456667777778876543 22211 11245677777654 78898888899999999986 6999999873
No 238
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=40.81 E-value=1.8e+02 Score=26.13 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
..+..+.+...|++.+...... .-.+-++++.+.+. +++|++-|-+++.+++..++...|+|||+.-
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 3455566677888876654311 01234677777655 6888888789999999984457999999864
No 239
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=40.71 E-value=2.5e+02 Score=28.70 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=43.9
Q ss_pred ChHHHHHHHHhCCeEEEecc------cC-------ChHHHHHHHHhcCceEEEe-------CChHHHHHHHHhhhccch
Q 017440 289 NPGAIKKIKEAKLCLVSYGE------LN-------NVPEVVYMQRFMGIEGVIV-------DLVSEITEAVSDFIKNEE 347 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgt------vn-------~~~~~~~l~~~~GVdgIiT-------D~p~~l~~~l~~~~~~~~ 347 (371)
-..++..++++|+.+++. | ++ +..+...+. ..|+|+|+- .||.+..+.+++....++
T Consensus 259 ~~~ii~aaraag~pvi~a-tqmLeSM~~~p~PTRAe~~dv~~~v-~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E 335 (473)
T TIGR01064 259 QKKMIRKCNRAGKPVITA-TQMLDSMIKNPRPTRAEVSDVANAI-LDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAE 335 (473)
T ss_pred HHHHHHHHHHcCCCEEEE-ChhhhhhhcCCCCCcccHHHHHHHH-HcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999987 6 23 455555664 589999877 889999988888766544
No 240
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=40.61 E-value=1.2e+02 Score=26.29 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=35.7
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
+.+...+++|+|+..... ....++.....+..+.+ ++.+.+++..+. ..|+|.++--
T Consensus 66 ~la~~~~~dGvHl~~~~~--~~~~~r~~~~~~~~ig~--S~h~~~e~~~a~-~~g~dYv~~g 122 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDL--PPAEARKLLGPDKIIGA--SCHSLEEAREAE-ELGADYVFLG 122 (180)
T ss_dssp HHHHHCT-SEEEEBTTSS--SHHHHHHHHTTTSEEEE--EESSHHHHHHHH-HCTTSEEEEE
T ss_pred HHHHhcCCCEEEeccccc--chHHhhhhcccceEEEe--ecCcHHHHHHhh-hcCCCEEEEC
Confidence 445667888888765542 44444444445565554 477778877764 6899988643
No 241
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.47 E-value=64 Score=28.79 Aligned_cols=68 Identities=26% Similarity=0.232 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHHCCCCCeE-EEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEE
Q 017440 227 SFQPDAALLIRKLQSTYPVF-FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~ 305 (371)
+|.++.++.+++. +++|+= -++-.. ....++.....|++.+..+++..--..+.++.++++|+++.+
T Consensus 43 ~~g~~~i~~i~~~-~~~~~DvHLMv~~-----------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gi 110 (201)
T PF00834_consen 43 TFGPDIIKAIRKI-TDLPLDVHLMVEN-----------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGI 110 (201)
T ss_dssp -B-HHHHHHHHTT-SSSEEEEEEESSS-----------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhhc-CCCcEEEEeeecc-----------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEE
Confidence 5889999999876 555542 222111 122345556678888888887532234799999999999876
Q ss_pred e
Q 017440 306 Y 306 (371)
Q Consensus 306 w 306 (371)
.
T Consensus 111 a 111 (201)
T PF00834_consen 111 A 111 (201)
T ss_dssp E
T ss_pred E
Confidence 5
No 242
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=40.43 E-value=40 Score=30.67 Aligned_cols=121 Identities=8% Similarity=0.026 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCC--CCeEEEcCCCCc-ccCCCC--cccHHHHHHHHHhCCCceEec
Q 017440 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQST--YPVFFLTNGGAQ-TCTDVR--RSSLDEAIKVCLAGGLQGIVS 281 (371)
Q Consensus 207 ~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~--~~~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~ 281 (371)
+.++++...+++.. -+++. +..+...+..... ..++.+..-... ...... ... ...++.+.+.|++.+..
T Consensus 21 ~~~~~~~a~~~~~~-av~v~---p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~-~~~ve~A~~~GAd~vd~ 95 (236)
T PF01791_consen 21 IKKLCREAIEYGFD-AVCVT---PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQI-VAEVEEAIRLGADEVDV 95 (236)
T ss_dssp HHHHHHHHHHHTSS-EEEEE---GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEE-HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHHhCCC-EEEEC---HHHHHHHHHHhhccccccceEEEeCCCCCccccccccch-HHHHHHHHHcCCceeee
Confidence 34455555566544 24443 3445555665554 244444432110 000000 000 23456678889887654
Q ss_pred cccc--ccC---------ChHHHHHHHHhCCeEEEecccCChH--------HH---HHHHHhcCceEEEeCCh
Q 017440 282 EVRA--IFK---------NPGAIKKIKEAKLCLVSYGELNNVP--------EV---VYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 282 ~~~~--~~~---------~~~~v~~~~~~Gl~v~~wgtvn~~~--------~~---~~l~~~~GVdgIiTD~p 332 (371)
-.++ ... -.++++.+|+.|+++.+|+...+.+ .+ .++..++|+|.|=|.+|
T Consensus 96 vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 96 VINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp EEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred eccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence 3222 100 1257888899999999995333333 12 23334699999999999
No 243
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=40.25 E-value=2.1e+02 Score=27.72 Aligned_cols=98 Identities=9% Similarity=0.056 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHH---HHHHhCCCceEecccccc---------cCChHHHHHHH
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAI---KVCLAGGLQGIVSEVRAI---------FKNPGAIKKIK 297 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~---------~~~~~~v~~~~ 297 (371)
.+++..+|+.. ++|+++-+......... .+.++.+ +.+...|++.+++..... -....+.+.++
T Consensus 196 ~eii~~ir~~~-~~~v~vRis~~d~~~~G---~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik 271 (337)
T PRK13523 196 REIIDAVKEVW-DGPLFVRISASDYHPGG---LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIR 271 (337)
T ss_pred HHHHHHHHHhc-CCCeEEEecccccCCCC---CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHH
Confidence 35677777765 56776544321100000 1344444 444456788887654321 00224566677
Q ss_pred Hh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 298 EA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 298 ~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
++ +++|.+=|-+++++.+.+++.+-++|.|.--+
T Consensus 272 ~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 272 EHANIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred hhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 65 46776655788999999987434489885444
No 244
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=40.16 E-value=95 Score=29.64 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCceEecccccc------cCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEe-----CC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIV-----DL 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT-----D~ 331 (371)
..+.++.+...|++.+.++.+.. ..+-+.+..+++. .++|++-|.+.+.+++.+++...|+|||+. .+
T Consensus 140 ~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~n 219 (309)
T PF01207_consen 140 TIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGN 219 (309)
T ss_dssp HHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-
T ss_pred HHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhc
Confidence 45566777788998887775421 1233455555444 588999999999999998875459999997 45
Q ss_pred hHHHHH
Q 017440 332 VSEITE 337 (371)
Q Consensus 332 p~~l~~ 337 (371)
|-.+.+
T Consensus 220 P~lf~~ 225 (309)
T PF01207_consen 220 PWLFRE 225 (309)
T ss_dssp CCHHCH
T ss_pred CHHhhh
Confidence 666663
No 245
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.97 E-value=1.1e+02 Score=30.21 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCceEeccccc-------cc-CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA-------IF-KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~-------~~-~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
..+..+.+...|++.+.++.+. .. ....+++.+++.+++|.+ |.+-+.+...+++ +.|+|+|+.-
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG 215 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVG 215 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEEC
Confidence 4455666778899888875421 00 123467777888999988 4788888888887 6999998554
No 246
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=39.64 E-value=2.6e+02 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHh-CCeEEEec--ccCChHHHHHHHHhcCceEEEe
Q 017440 291 GAIKKIKEA-KLCLVSYG--ELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wg--tvn~~~~~~~l~~~~GVdgIiT 329 (371)
++++.++++ ++.|.+=- ...+..++.+.+.+.|+|+|..
T Consensus 144 eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 144 EIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 467777777 67766510 2233444444445689998753
No 247
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=39.56 E-value=2.5e+02 Score=26.09 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc-------------------c-----
Q 017440 232 AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI-------------------F----- 287 (371)
Q Consensus 232 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------~----- 287 (371)
+++.+++.. ++|+..-..... + .....+..+.+...|++++.+..... +
T Consensus 153 iv~~vr~~~-~~pv~vKl~~~~----~--~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~ 225 (289)
T cd02810 153 LLKAVKAAV-DIPLLVKLSPYF----D--LEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPI 225 (289)
T ss_pred HHHHHHHcc-CCCEEEEeCCCC----C--HHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHH
Confidence 455555543 566665443321 0 01244556667778888877542100 0
Q ss_pred --CChHHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 288 --KNPGAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 288 --~~~~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
...+.++.+++. ++.|.+=|-+.+.+++.+++ ..|+|+|..-+.
T Consensus 226 ~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l-~~GAd~V~vg~a 274 (289)
T cd02810 226 RPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEML-MAGASAVQVATA 274 (289)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHH-HcCccHheEcHH
Confidence 012456666664 57887777799999999987 589998865443
No 248
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.55 E-value=2.7e+02 Score=28.24 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCC-cccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEE-
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGA-QTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLV- 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~- 304 (371)
.++.++.+++..|+.++..+..... ..+.....+-....++.+.+.|++.+.+.... ...-...++.++++|+.+.
T Consensus 62 p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 62 PWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 5778889988888887765443321 11111111124556677788888876643221 1112357899999998753
Q ss_pred --EecccCC---hH----HHHHHHHhcCceEEEeCC------hHHHHHHHHhh
Q 017440 305 --SYGELNN---VP----EVVYMQRFMGIEGVIVDL------VSEITEAVSDF 342 (371)
Q Consensus 305 --~wgtvn~---~~----~~~~l~~~~GVdgIiTD~------p~~l~~~l~~~ 342 (371)
++ |... .+ .++++ .++|+|.|.-=+ |..+.++++..
T Consensus 142 ~i~~-t~~p~~~~~~~~~~a~~l-~~~Gad~I~i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 142 AISY-TTSPVHTIDYFVKLAKEM-QEMGADSICIKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred EEEe-ecCCCCCHHHHHHHHHHH-HHcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 44 4332 12 22333 469999885432 66666665554
No 249
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=39.13 E-value=3.6e+02 Score=26.10 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=34.8
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
++++.+++. +.+|.+-|-+.+++++.+++..-++|+|.--++-.....+
T Consensus 275 ~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l 324 (343)
T cd04734 275 PLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL 324 (343)
T ss_pred HHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence 455556654 6777776678899999999854569999887766655443
No 250
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=39.12 E-value=1.2e+02 Score=29.84 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCceEeccccc-------ccCCh-HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA-------IFKNP-GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~-------~~~~~-~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
..+..+.+...|++.+.++... -..++ .+.+..++.+++|++ |.+.+.+++.+++ +.|+|+|+
T Consensus 144 ~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~ 214 (369)
T TIGR01304 144 AREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVI 214 (369)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEE
Confidence 4455566677788877765211 01123 355667778899887 4788888888886 59999997
No 251
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.04 E-value=3.2e+02 Score=25.29 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=29.9
Q ss_pred hHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 290 PGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 290 ~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.+.++.+++. +.+|.+=+-+++++++.++. +.|+||++.=.
T Consensus 187 ~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGS 228 (256)
T TIGR00262 187 NELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECH
Confidence 3567777765 45666544588899998875 79999998864
No 252
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=38.94 E-value=1.9e+02 Score=24.90 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=42.8
Q ss_pred CeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCC
Q 017440 222 PIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL 301 (371)
Q Consensus 222 ~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl 301 (371)
.++++- -.....+++.. ++|+.-+-.+. .++-.++..++..+-..-...+.........+..+ .|+
T Consensus 36 dViIsR--G~ta~~lr~~~-~iPVV~I~~s~---------~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l--l~~ 101 (176)
T PF06506_consen 36 DVIISR--GGTAELLRKHV-SIPVVEIPISG---------FDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL--LGV 101 (176)
T ss_dssp SEEEEE--HHHHHHHHCC--SS-EEEE---H---------HHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH--HT-
T ss_pred eEEEEC--CHHHHHHHHhC-CCCEEEECCCH---------hHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH--hCC
Confidence 455553 33445556655 67777654322 13444555555444332222233322223333333 366
Q ss_pred eEEEecccCChHHHHHHHH---hcCceEEEeCCh
Q 017440 302 CLVSYGELNNVPEVVYMQR---FMGIEGVIVDLV 332 (371)
Q Consensus 302 ~v~~wgtvn~~~~~~~l~~---~~GVdgIiTD~p 332 (371)
.+..+ ..++.+++...+. ..|+|.|+-+..
T Consensus 102 ~i~~~-~~~~~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 102 DIKIY-PYDSEEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp EEEEE-EESSHHHHHHHHHHHHHTT--EEEESHH
T ss_pred ceEEE-EECCHHHHHHHHHHHHHcCCcEEECCHH
Confidence 66666 5666666654432 367777777754
No 253
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=38.46 E-value=2.8e+02 Score=24.54 Aligned_cols=131 Identities=14% Similarity=0.024 Sum_probs=74.5
Q ss_pred CceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEe------cCCHHHHHHHHHHCCCCCeEEEcCCCCccc
Q 017440 183 SVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFS------SFQPDAALLIRKLQSTYPVFFLTNGGAQTC 256 (371)
Q Consensus 183 ~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~------Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~ 256 (371)
++.+..|+|..++....-... .-..++.....+.|.. .+.+. .-+.+.+..+++. .++|+.... ..
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~-~~~~~~A~~~~~~GA~-~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~-~i---- 81 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIRED-FDPVEIAKAYEKAGAA-AISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKD-FI---- 81 (217)
T ss_pred CceEEEEecCCCCCCCcCCCC-CCHHHHHHHHHHcCCC-EEEEEeCccccCCCHHHHHHHHHh-cCCCEEECC-ee----
Confidence 689999999865431100000 0112333334444432 33332 1256778888876 367776421 10
Q ss_pred CCCCcccHHHHHHHHHhCCCceEeccccccc--CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 257 TDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
.+ ...++.+...|++++++....+. ...++++.++..|+.+.+- +.+.+++.+.. ++|+|.|...
T Consensus 82 -----~~-~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~--v~~~~e~~~~~-~~g~~~i~~t 148 (217)
T cd00331 82 -----ID-PYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVE--VHDEEELERAL-ALGAKIIGIN 148 (217)
T ss_pred -----cC-HHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEE--ECCHHHHHHHH-HcCCCEEEEe
Confidence 01 12467788899999986543221 1145667778889987554 45677777775 6999988544
No 254
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=38.28 E-value=3.4e+02 Score=25.43 Aligned_cols=51 Identities=8% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC-----hHHHHHHHHhh
Q 017440 291 GAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL-----VSEITEAVSDF 342 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-----p~~l~~~l~~~ 342 (371)
+.+..++++ ++.|..=|-+.+.+++.+++ ..|+|+|+.=+ |..+.++.++.
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFL-MAGASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHH-HcCCCceeecHHHhcCchHHHHHHHHH
Confidence 455566554 67877666799999999997 58999986543 45544444443
No 255
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=38.24 E-value=1e+02 Score=28.55 Aligned_cols=68 Identities=21% Similarity=0.161 Sum_probs=41.4
Q ss_pred cHHHHHHHHHhCCCceEecccccccCC----hHHHHHHHHhCCeEEEeccc-CC--------hH----HHHHHHHhcCce
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCLVSYGEL-NN--------VP----EVVYMQRFMGIE 325 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~~~~Gl~v~~wgtv-n~--------~~----~~~~l~~~~GVd 325 (371)
.+.+.++.|+.+|++.|-++....-++ .++|+.+++.|+.|.+= .- .+ ++ .+...+ +.|++
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~E-vG~K~~~~~~~~~~~~~i~~~~~dL-eAGA~ 162 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSE-VGKKDPESDFSLDPEELIEQAKRDL-EAGAD 162 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEE-ES-SSHHHHTT--CCHHHHHHHHHH-HHTEC
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeec-ccCCCchhcccCCHHHHHHHHHHHH-HCCCC
Confidence 578889999999999887664433233 36899999999998863 11 11 11 223333 58999
Q ss_pred EEEeCCh
Q 017440 326 GVIVDLV 332 (371)
Q Consensus 326 gIiTD~p 332 (371)
.||++--
T Consensus 163 ~ViiEar 169 (244)
T PF02679_consen 163 KVIIEAR 169 (244)
T ss_dssp EEEE--T
T ss_pred EEEEeee
Confidence 9998754
No 256
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.02 E-value=2.5e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC-----hHHHHHHHHhh
Q 017440 296 IKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL-----VSEITEAVSDF 342 (371)
Q Consensus 296 ~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-----p~~l~~~l~~~ 342 (371)
+++.+.++.+-|-+++.+++..++ ..|+|+|+... |+.+.++.+.+
T Consensus 72 ~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 72 IEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred HHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHHhhChHHHHHHHHHh
Confidence 355567777766678888887776 68888887765 44455555554
No 257
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=37.97 E-value=2e+02 Score=26.55 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=49.5
Q ss_pred cHHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
...+..+.+...|+..+...... .-.+-++++.+.+. +++|.+-|-+.+.+++.+++...||||++.-.+-.+
T Consensus 153 ~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 153 DPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 34566677778887766543111 01234666666654 688998888999999999864699999987655433
No 258
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=37.92 E-value=3.8e+02 Score=25.79 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=54.8
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc------ccc----CC------hHHH
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR------AIF----KN------PGAI 293 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~----~~------~~~v 293 (371)
.+.++.+++..|+++++. ... .+...+ ..+...|+++|.+... ... -. .+..
T Consensus 123 ~~~i~~ik~~~p~v~Vi~--G~v---------~t~~~A-~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~ 190 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIA--GNV---------VTAEAA-RDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVA 190 (325)
T ss_pred HHHHHHHHHHCCCceEEE--CCC---------CCHHHH-HHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHH
Confidence 356677777776665543 111 233333 4456788988864210 000 01 2344
Q ss_pred HHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 294 KKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 294 ~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+++.+++|.+=|-+.+..++.+.+ .+|+|+++.-.
T Consensus 191 ~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~VmiGt 227 (325)
T cd00381 191 AAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVMLGS 227 (325)
T ss_pred HHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEEecc
Confidence 45566689999887788888888887 69999998833
No 259
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=37.90 E-value=4e+02 Score=26.06 Aligned_cols=87 Identities=10% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-----------HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-----------DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-----------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
.++..+++.-++. ..+++++.... .+++.+.+..+.+|+++=.+-.. ++ +.+..|..
T Consensus 27 e~~~aii~AAEe~--~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDHg~---------~~-e~i~~Ai~ 94 (347)
T TIGR01521 27 EQMRAIMEAADKT--DSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDHGN---------SP-ATCQRAIQ 94 (347)
T ss_pred HHHHHHHHHHHHh--CCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCCCC---------CH-HHHHHHHH
Confidence 3455666555544 34566654221 12333344444578887665431 23 34566777
Q ss_pred CCCceEecccccc-------------cCChHHHHHHHHhCCeE
Q 017440 274 GGLQGIVSEVRAI-------------FKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 274 ~~~~~v~~~~~~~-------------~~~~~~v~~~~~~Gl~v 303 (371)
.|+++|..+.+.+ ..|.+.++.+|..|+.|
T Consensus 95 ~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 95 LGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred cCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8998887765532 34678999999988765
No 260
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=37.80 E-value=5.5e+02 Score=27.68 Aligned_cols=141 Identities=13% Similarity=0.018 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcC------CCCeEEecCCHHHHHHHHHHCCCCCeE
Q 017440 173 LQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQ------GRPIMFSSFQPDAALLIRKLQSTYPVF 246 (371)
Q Consensus 173 L~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~------~~~v~i~Sf~~~~l~~l~~~~p~~~~~ 246 (371)
+...|..- +.+.+.-|+|..++....-.. ..-...+...+.+.|. .++-+|. -+.+.|..+++.. ++|+.
T Consensus 40 ~~~al~~~-~~~~vIaEiKraSPs~G~i~~-~~d~~~~a~~y~~~GA~aiSVlTe~~~F~-Gs~~~l~~vr~~v-~~PvL 115 (695)
T PRK13802 40 ATRWLKRA-DGIPVIAEIKRASPSKGHLSD-IPDPAALAREYEQGGASAISVLTEGRRFL-GSLDDFDKVRAAV-HIPVL 115 (695)
T ss_pred HHHHHhhC-CCCeEEEEeecCCCCCCcCCC-CCCHHHHHHHHHHcCCcEEEEecCcCcCC-CCHHHHHHHHHhC-CCCEE
Confidence 44444422 247899999986543110000 0012334444455443 2233333 2567788888763 46654
Q ss_pred EEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccccc--CChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCc
Q 017440 247 FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIF--KNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGI 324 (371)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GV 324 (371)
. . |+-.. ..-+..++..|++.|.+-...+- .-.++++.+++.|+.+.+= |.+.+++.+.+ +.|+
T Consensus 116 r--K-------DFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvE--vh~~~el~~a~-~~ga 181 (695)
T PRK13802 116 R--K-------DFIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVE--THTREEIERAI-AAGA 181 (695)
T ss_pred e--c-------cccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-hCCC
Confidence 2 1 11001 12245677889998876554321 1246889999999999995 78889998886 6898
Q ss_pred eEEEeCC
Q 017440 325 EGVIVDL 331 (371)
Q Consensus 325 dgIiTD~ 331 (371)
+.|-.|+
T Consensus 182 ~iiGINn 188 (695)
T PRK13802 182 KVIGINA 188 (695)
T ss_pred CEEEEeC
Confidence 8774443
No 261
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=37.77 E-value=1.7e+02 Score=30.01 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc--cccCC--------------hHHH
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKN--------------PGAI 293 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~--------------~~~v 293 (371)
.+.++++++..|+++++. ... .+.+ ....+...|++++.+... ..-.+ .+..
T Consensus 270 ~~~i~~ik~~~~~~~v~a--G~V---------~t~~-~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~ 337 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIA--GNV---------VTAD-QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVA 337 (495)
T ss_pred HHHHHHHHhhCCCceEEE--CCc---------CCHH-HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHH
Confidence 467888888777766554 111 1223 344566789988843210 00001 2355
Q ss_pred HHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 294 KKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 294 ~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
+.+++.|+.+++=|-+.++.++.+.+ .+|+|+|+--..
T Consensus 338 ~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm~G~~ 375 (495)
T PTZ00314 338 RYARERGVPCIADGGIKNSGDICKAL-ALGADCVMLGSL 375 (495)
T ss_pred HHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEEECch
Confidence 56777899998866678888988886 799999987765
No 262
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=36.84 E-value=4.3e+02 Score=26.65 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=64.2
Q ss_pred CCccCHHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEE
Q 017440 168 TPLCTLQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFF 247 (371)
Q Consensus 168 ~~iptL~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~ 247 (371)
..|.-++++.+.+| ++.+.| .... .+..++.++ .++ .+-+.+..+.+..+..+ ..++.+.+
T Consensus 292 ~~I~~i~~Lv~~lP-d~~f~I---ga~t---------e~s~kL~~L-~~y--~nvvly~~~~~~~l~~l---y~~~dlyL 352 (438)
T TIGR02919 292 DQIEHLEEIVQALP-DYHFHI---AALT---------EMSSKLMSL-DKY--DNVKLYPNITTQKIQEL---YQTCDIYL 352 (438)
T ss_pred HHHHHHHHHHHhCC-CcEEEE---EecC---------cccHHHHHH-Hhc--CCcEEECCcChHHHHHH---HHhccEEE
Confidence 34445555555554 555555 2211 122344444 555 44556666666444433 33455555
Q ss_pred EcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEE
Q 017440 248 LTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgI 327 (371)
....+ ..+..++..|...|...+..+...- .++++.. | +.. ..++.++|.+.+..+
T Consensus 353 din~~---------e~~~~al~eA~~~G~pI~afd~t~~--~~~~i~~----g---~l~-~~~~~~~m~~~i~~l----- 408 (438)
T TIGR02919 353 DINHG---------NEILNAVRRAFEYNLLILGFEETAH--NRDFIAS----E---NIF-EHNEVDQLISKLKDL----- 408 (438)
T ss_pred Ecccc---------ccHHHHHHHHHHcCCcEEEEecccC--CcccccC----C---cee-cCCCHHHHHHHHHHH-----
Confidence 55432 2344445555556655554332210 1122222 2 123 345555555544323
Q ss_pred EeCChHHHHHHHHhhhccchhhh
Q 017440 328 IVDLVSEITEAVSDFIKNEEEIK 350 (371)
Q Consensus 328 iTD~p~~l~~~l~~~~~~~~~~~ 350 (371)
-..|+.+.+.|.....+|...+
T Consensus 409 -L~d~~~~~~~~~~q~~~a~~~~ 430 (438)
T TIGR02919 409 -LNDPNQFRELLEQQREHANDIS 430 (438)
T ss_pred -hcCHHHHHHHHHHHHHHhccCC
Confidence 3456666666666555554444
No 263
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=36.84 E-value=4.3e+02 Score=26.21 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=60.2
Q ss_pred CCeEEecCC--HHHHHHHHHHCCC--CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHH
Q 017440 221 RPIMFSSFQ--PDAALLIRKLQST--YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKI 296 (371)
Q Consensus 221 ~~v~i~Sf~--~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~ 296 (371)
.++++.+.. ...++.+++..+. ..+.|-... ++-...++.....|...-+ .+..-++.+
T Consensus 27 TP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKA----------n~~~~il~~l~~~g~g~Dv-------~S~gEl~~a 89 (394)
T COG0019 27 TPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKA----------NSNPAILRLLAEEGSGFDV-------ASLGELELA 89 (394)
T ss_pred CCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcC----------CCCHHHHHHHHHhCCCcee-------cCHHHHHHH
Confidence 355555433 2334455555555 344444332 2223445555554432111 245567777
Q ss_pred HHhCCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 297 KEAKLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 297 ~~~Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
.++|.. ++..+...+.+++.+.+ +.|+..|..|...++.++-+
T Consensus 90 l~aG~~~~~I~f~g~~ks~~ei~~a~-e~gi~~i~vdS~~El~~l~~ 135 (394)
T COG0019 90 LAAGFPPERIVFSGPAKSEEEIAFAL-ELGIKLINVDSEEELERLSA 135 (394)
T ss_pred HHcCCChhhEEECCCCCCHHHHHHHH-HcCCcEEEeCCHHHHHHHHH
Confidence 777865 77776666777887776 78998899999888876643
No 264
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=36.75 E-value=3.7e+02 Score=25.41 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH--------H----HHHHHHHHCC-CCCeEEEcCCCCcccCCCCcccHHHHHHHH
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP--------D----AALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVC 271 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~--------~----~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 271 (371)
.++..+++.-++. ..+++++.... + .++.+.+... .+|+++=.+-+. +++ .+..|
T Consensus 29 e~~~avi~AAe~~--~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~---------~~e-~i~~a 96 (285)
T PRK07709 29 EWTQAILAAAEEE--KSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGS---------SFE-KCKEA 96 (285)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCC---------CHH-HHHHH
Confidence 3455666655554 34566654221 1 2233333322 368877655432 233 34566
Q ss_pred HhCCCceEecccccc------cCChHHHHHHHHhCCeEEE----e-cc----------cCChHHHHHHHHhcCceEEEe
Q 017440 272 LAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----Y-GE----------LNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 272 ~~~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-gt----------vn~~~~~~~l~~~~GVdgIiT 329 (371)
...|+++|..+.+.+ ..|.+.++.+|..|+.|=+ = |. .-++++..++..+.|||.+-.
T Consensus 97 i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAv 175 (285)
T PRK07709 97 IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAP 175 (285)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEE
Confidence 778998888765432 3577899999999987632 0 11 126778888876788887753
No 265
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.48 E-value=3.3e+02 Score=24.70 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCeEEEec-cc----CChHHH---HHHHHhcCceEEEe------CChHHHHHHHHhhh
Q 017440 291 GAIKKIKEAKLCLVSYG-EL----NNVPEV---VYMQRFMGIEGVIV------DLVSEITEAVSDFI 343 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wg-tv----n~~~~~---~~l~~~~GVdgIiT------D~p~~l~~~l~~~~ 343 (371)
+.++.+++.|+.+.+.. ++ .+++.. .+.+.+.|++.|.- -.|..+.++++...
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 57788889998876541 12 222222 22234688877643 34666666665544
No 266
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=36.47 E-value=69 Score=28.31 Aligned_cols=39 Identities=10% Similarity=0.168 Sum_probs=30.7
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.+++.+++.|+.|.+- -|++.++...+ +++|+|.+.=++
T Consensus 194 ~l~~~~~~~~~~via~-gVe~~~~~~~l-~~~G~~~~QG~~ 232 (236)
T PF00563_consen 194 SLINLAKSLGIKVIAE-GVESEEQLELL-KELGVDYIQGYL 232 (236)
T ss_dssp HHHHHHHHTT-EEEEE-CE-SHHHHHHH-HHTTESEEESTT
T ss_pred HHHHHhhcccccccee-ecCCHHHHHHH-HHcCCCEEEeCC
Confidence 4778899999999999 59999988777 589999876543
No 267
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=36.32 E-value=59 Score=32.54 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCCCCe--EEecCCHHHHHHHHHHCC
Q 017440 173 LQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQGRPI--MFSSFQPDAALLIRKLQS 241 (371)
Q Consensus 173 L~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~~~v--~i~Sf~~~~l~~l~~~~p 241 (371)
+.+.+....++..+-||+-... +...-++.+++.|.. |+ -++||+.+.++.+.+.++
T Consensus 113 l~~~~~~~~~~~EitiE~nP~~-----------~~~e~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~ 171 (416)
T COG0635 113 LRELFNDLDPDAEITIEANPGT-----------VEAEKFKALKEAGVN-RISLGVQSFNDEVLKALGRIHD 171 (416)
T ss_pred HHHhcccCCCCceEEEEeCCCC-----------CCHHHHHHHHHcCCC-EEEeccccCCHHHHHHhcCCCC
Confidence 3444431224588999983321 223445677888877 44 589999999998876654
No 268
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=35.97 E-value=1.4e+02 Score=30.72 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=42.7
Q ss_pred HHHHHhCCCceEecccccccCCh--HHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNP--GAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~--~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
++.+.+.|++.|.++...-.... +.++++++. +..|++= .|.+.++...++ +.|+|+|..
T Consensus 253 ~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g-~v~t~e~a~~a~-~aGaD~i~v 316 (505)
T PLN02274 253 LEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGG-NVVTMYQAQNLI-QAGVDGLRV 316 (505)
T ss_pred HHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEe-cCCCHHHHHHHH-HcCcCEEEE
Confidence 34445678998887754311112 689999987 5777766 688999998886 799999953
No 269
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.86 E-value=2.2e+02 Score=27.07 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHH
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~ 298 (371)
+++.+..+++..+ +|+... ++. .+..++.+..+..|+++|... +.++.+|.+.+.+++
T Consensus 180 ~~~~i~~i~~~~~-ipvi~n--GgI--------~~~~da~~~l~~~gad~Vmig-R~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 180 NWDIIARVKQAVR-IPVIGN--GDI--------FSPEDAKAMLETTGCDGVMIG-RGALGNPWLFRQIEQ 237 (319)
T ss_pred hHHHHHHHHHcCC-CcEEEe--CCC--------CCHHHHHHHHHhhCCCEEEEC-hhhhhCChHHHHHHH
Confidence 5666777776543 565442 221 245666666666789988764 334568888877754
No 270
>PLN02428 lipoic acid synthase
Probab=35.70 E-value=4.3e+02 Score=25.82 Aligned_cols=38 Identities=29% Similarity=0.239 Sum_probs=22.0
Q ss_pred HHHHHHHHh--CCeEEEe---cccCChHHHHH---HHHhcCceEEE
Q 017440 291 GAIKKIKEA--KLCLVSY---GELNNVPEVVY---MQRFMGIEGVI 328 (371)
Q Consensus 291 ~~v~~~~~~--Gl~v~~w---gtvn~~~~~~~---l~~~~GVdgIi 328 (371)
+.++.+++. |+.+..+ |...+.++..+ .++++|||.+.
T Consensus 235 e~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vt 280 (349)
T PLN02428 235 DVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVT 280 (349)
T ss_pred HHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEe
Confidence 577778888 8776433 22234444433 34568888764
No 271
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=35.01 E-value=2.1e+02 Score=26.65 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHhC-CeEEEecccCChHHHHHHHHhcCceEEEe-------CChHHHHHHHH
Q 017440 287 FKNPGAIKKIKEAK-LCLVSYGELNNVPEVVYMQRFMGIEGVIV-------DLVSEITEAVS 340 (371)
Q Consensus 287 ~~~~~~v~~~~~~G-l~v~~wgtvn~~~~~~~l~~~~GVdgIiT-------D~p~~l~~~l~ 340 (371)
+.++..++.+.+.. ++|.+-.-+-++++..+.+ ++|+||+.. ++|..+.+.++
T Consensus 175 l~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 175 LQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred CCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEeecceeecCCCHHHHHHHHH
Confidence 35888899888854 7777665588889988885 899999976 45766665554
No 272
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.94 E-value=1.2e+02 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=26.7
Q ss_pred hHHHHHHHHhCC---eEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 290 PGAIKKIKEAKL---CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 290 ~~~v~~~~~~Gl---~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
.++++.+++.+. .+++=|..-.. ....+ ...|+|+++++..+.+
T Consensus 68 ~~~i~~l~~~~~~~~~i~vGG~~~~~-~~~~~-~~~G~D~~~~~~~~~~ 114 (119)
T cd02067 68 KEVIEELKEAGLDDIPVLVGGAIVTR-DFKFL-KEIGVDAYFGPATEAV 114 (119)
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCCh-hHHHH-HHcCCeEEECCHHHHH
Confidence 467777788754 34544433222 11233 5799999999887443
No 273
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=34.53 E-value=2.4e+02 Score=26.37 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=31.4
Q ss_pred HHHHhCCCceEecccccccCCh----HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~----~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+...|++.+.++.++-..+. .++..+...|...++=-.-+++..+.+.+ +.|++||+.=+
T Consensus 33 E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~L-D~GA~GIivP~ 98 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVL-DIGAQTLLIPM 98 (267)
T ss_pred HHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHh-CCCCCeeEecC
Confidence 4444556666666555432232 24455555665544431123455555554 67777776433
No 274
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.42 E-value=3.7e+02 Score=24.72 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEEEe
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~~w 306 (371)
+++.++.+++..++.+...+..... .. .+.++.+...|++.+...... ...-.+.++.++++|+.+.+.
T Consensus 61 ~~e~i~~~~~~~~~~~~~~~~~~~~--------~~-~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 61 DEEYLEAAAEALKQAKLGVLLLPGI--------GT-VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred hHHHHHHHHHhccCCEEEEEecCCc--------cC-HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4567777877667666554432110 01 233566667787766543211 111346889999999987654
Q ss_pred c---ccCChHHHHHH---HHhcCceEEEe-C-----ChHHHHHHHHhhh
Q 017440 307 G---ELNNVPEVVYM---QRFMGIEGVIV-D-----LVSEITEAVSDFI 343 (371)
Q Consensus 307 g---tvn~~~~~~~l---~~~~GVdgIiT-D-----~p~~l~~~l~~~~ 343 (371)
. +-.+++.+.++ ..+.|+|.|.- | .|..+.++++...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 132 LMMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred EEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 1 01234444332 24589998753 2 4777777766543
No 275
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.30 E-value=3.9e+02 Score=24.90 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=29.0
Q ss_pred hHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 290 PGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 290 ~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.++++.+++. ++++.+=+-++++++.+++. ..|+||++.=.
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECH
Confidence 4566667665 45554432599999998875 79999998754
No 276
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=34.18 E-value=3.3e+02 Score=24.11 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCceEeccccc------ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 265 DEAIKVCLAGGLQGIVSEVRA------IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~------~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
.+.++.+...|++.++++... ...+-+.++.+++. +++|.+-|-+.+.+++.+++..-|+|+|+.-++-.
T Consensus 141 ~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 141 LELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred HHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 344455556677666544321 01233556666664 57888777788999999987434899998776543
No 277
>PTZ00413 lipoate synthase; Provisional
Probab=33.92 E-value=4.6e+02 Score=26.08 Aligned_cols=112 Identities=16% Similarity=0.149 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCCCeEEecCCH------------HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCC
Q 017440 208 EAILKVVFEHAQGRPIMFSSFQP------------DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGG 275 (371)
Q Consensus 208 ~~vl~~l~~~~~~~~v~i~Sf~~------------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
..+.+.+++.+.. .+++.|-+. +.++.|++..|++.+-.++... . +. .+.++..+..|
T Consensus 183 ~~vA~av~~~Gl~-~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf-------~-g~-~e~l~~L~eAG 252 (398)
T PTZ00413 183 EKVAKAVAEMGVD-YIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDF-------H-GD-LKSVEKLANSP 252 (398)
T ss_pred HHHHHHHHHcCCC-EEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCcc-------c-cC-HHHHHHHHhcC
Confidence 3444455666664 677777542 3455566656666665554321 0 11 23455666677
Q ss_pred CceEecccccc------cC--------ChHHHHHHHHh---CCeEEEe---cccCChHHHHHH---HHhcCceEEEe
Q 017440 276 LQGIVSEVRAI------FK--------NPGAIKKIKEA---KLCLVSY---GELNNVPEVVYM---QRFMGIEGVIV 329 (371)
Q Consensus 276 ~~~v~~~~~~~------~~--------~~~~v~~~~~~---Gl~v~~w---gtvn~~~~~~~l---~~~~GVdgIiT 329 (371)
++.++-+.+.. .. .-++++.+++. |+.+-.. |--.+.+++.++ ++++|||.+.-
T Consensus 253 ~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 253 LSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred CCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEee
Confidence 76665442210 01 12567777776 7766333 222344444332 34689997765
No 278
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=33.84 E-value=5.2e+02 Score=26.75 Aligned_cols=122 Identities=8% Similarity=0.086 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
.+...+.+.+.+.+ .++++.-.|++.++.+++. ++++.+ .+.. -.+.++.+.-..++.+.....
T Consensus 427 ~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~--g~~~i~--GD~~----------~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 427 RVGSLLGEKLLAAG--IPLVVIETSRTRVDELRER--GIRAVL--GNAA----------NEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred hHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHC--CCeEEE--cCCC----------CHHHHHhcCccccCEEEEEcC
Confidence 34566777776654 3577777788888887753 444432 2111 122233332233444432211
Q ss_pred cccCChHHHHHHHHhC--CeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhhhcc
Q 017440 285 AIFKNPGAIKKIKEAK--LCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKN 345 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~G--l~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~~~~ 345 (371)
....+...+..+++.. .++.+- +++++....+ ++.|+|.++.-.-...++..+...++
T Consensus 491 ~~~~~~~iv~~~~~~~~~~~iiar--~~~~~~~~~l-~~~Gad~vv~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 491 NGYEAGEIVASAREKRPDIEIIAR--AHYDDEVAYI-TERGANQVVMGEREIARTMLELLETP 550 (558)
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHH-HHcCCCEEEChHHHHHHHHHHHhcCC
Confidence 1111223555566654 444543 5666666666 57999998854444444444444433
No 279
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=33.81 E-value=55 Score=25.24 Aligned_cols=37 Identities=3% Similarity=-0.118 Sum_probs=29.4
Q ss_pred ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceE
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEG 326 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdg 326 (371)
--..++.++++|+++|.. +.++.+.+.++.+.+|..-
T Consensus 41 ~~~~~~~L~~~g~P~Y~h-v~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 41 MYHLAQYLHKLGFPFYGH-VDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred HHHHHHHHHHCCCCeEee-hHhccHHHHHHHHHCCCee
Confidence 346889999999999999 7777777888877777543
No 280
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=33.74 E-value=2.7e+02 Score=24.84 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCceEecccc-c----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 264 LDEAIKVCLAGGLQGIVSEVR-A----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~-~----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..+.++.+...|++.+..... . .-.+-++++.+.+. +.++.+-|-+.+.+++.+++ ..|+||++.-.
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gadgv~ig~ 219 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVYGVIVGK 219 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEeH
Confidence 445556667778876553311 0 11234677777664 67888887899999998886 69999998753
No 281
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=33.73 E-value=4.6e+02 Score=25.52 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=28.7
Q ss_pred ChHHHHHHHHhCC---eEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 289 NPGAIKKIKEAKL---CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 289 ~~~~v~~~~~~Gl---~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
+..-+..+++.|. .+...|...+.+++..++ +.|+ -+..|.++++..+.+
T Consensus 64 S~~E~~~~~~~G~~~~~Ii~~g~~k~~~~l~~a~-~~g~-~i~ids~~el~~l~~ 116 (379)
T cd06841 64 SAMEYELALKLGVPGKRIIFNGPYKSKEELEKAL-EEGA-LINIDSFDELERILE 116 (379)
T ss_pred CHHHHHHHHHcCCChHHEEEECCCCCHHHHHHHH-HCCC-EEEECCHHHHHHHHH
Confidence 3445666666665 233333344556666654 5676 577777777766643
No 282
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=33.60 E-value=72 Score=34.58 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEE
Q 017440 262 SSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLV 304 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~ 304 (371)
-++++++..|+..|++.|+|.|..+--++++.+++.++|+...
T Consensus 67 L~IdeII~iAk~~gaDaIhPGYGfLSEn~efA~~c~eaGI~FI 109 (1149)
T COG1038 67 LSIDEIIRIAKRSGADAIHPGYGFLSENPEFARACAEAGITFI 109 (1149)
T ss_pred ccHHHHHHHHHHcCCCeecCCcccccCCHHHHHHHHHcCCEEe
Confidence 4688999999999999999999887778999999999998755
No 283
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=33.05 E-value=4e+02 Score=24.66 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhcCC------CCeEEecCCHHHHHHHHHHCCCCCeE
Q 017440 173 LQEAFEKVDQSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHAQG------RPIMFSSFQPDAALLIRKLQSTYPVF 246 (371)
Q Consensus 173 L~evL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~~~------~~v~i~Sf~~~~l~~l~~~~p~~~~~ 246 (371)
|.+.|. .+++.+..|+|..++....-. ...-...+...+.+.|.. ++-+| ..+.+.++.+++.. ++|+.
T Consensus 32 ~~~~l~--~~~~~vIaEiKr~SPs~G~i~-~~~d~~~~A~~y~~~GA~aISVlTe~~~F-~Gs~~~l~~v~~~v-~~PvL 106 (247)
T PRK13957 32 LRDSLK--SRSFSIIAECKRKSPSAGELR-ADYHPVQIAKTYETLGASAISVLTDQSYF-GGSLEDLKSVSSEL-KIPVL 106 (247)
T ss_pred HHHHHh--CCCCeEEEEEecCCCCCCCcC-CCCCHHHHHHHHHHCCCcEEEEEcCCCcC-CCCHHHHHHHHHhc-CCCEE
Confidence 556553 346999999998643211000 000022344445555532 22222 35678888888763 45654
Q ss_pred EEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCC----hHHHHHHHHhCCeEEEecccCChHHHHHHHHhc
Q 017440 247 FLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKN----PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFM 322 (371)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~ 322 (371)
.- + +- .. ..-+..+...|++.|.+-...+ + .++++.+++.|+.+.+= |.+.+++.... +.
T Consensus 107 ~K--D-------FI-id-~~QI~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGle~LVE--Vh~~~El~~a~-~~ 170 (247)
T PRK13957 107 RK--D-------FI-LD-EIQIREARAFGASAILLIVRIL--TPSQIKSFLKHASSLGMDVLVE--VHTEDEAKLAL-DC 170 (247)
T ss_pred ec--c-------cc-CC-HHHHHHHHHcCCCEEEeEHhhC--CHHHHHHHHHHHHHcCCceEEE--ECCHHHHHHHH-hC
Confidence 31 1 10 01 1224456678999887665543 4 35889999999999985 77888988876 68
Q ss_pred CceEEEeCC
Q 017440 323 GIEGVIVDL 331 (371)
Q Consensus 323 GVdgIiTD~ 331 (371)
|++.|-.|+
T Consensus 171 ga~iiGINn 179 (247)
T PRK13957 171 GAEIIGINT 179 (247)
T ss_pred CCCEEEEeC
Confidence 888776665
No 284
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.70 E-value=4.2e+02 Score=28.78 Aligned_cols=102 Identities=10% Similarity=0.080 Sum_probs=61.4
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHHH---HHHHhCCCceEecccccc----------cCChHHHHH
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAI---KVCLAGGLQGIVSEVRAI----------FKNPGAIKK 295 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~----------~~~~~~v~~ 295 (371)
.++++.+|+.. +++|+++-+..... ... ..+.++.+ +.+...|++.+++..... .....+.+.
T Consensus 605 ~eiv~~ir~~~~~~~~v~~ri~~~~~-~~~--g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 681 (765)
T PRK08255 605 LEVFRAVRAVWPAEKPMSVRISAHDW-VEG--GNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADR 681 (765)
T ss_pred HHHHHHHHHhcCCCCeeEEEEccccc-cCC--CCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHH
Confidence 46778888876 46788875543210 000 01344444 444556888887652110 012345555
Q ss_pred HHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHH
Q 017440 296 IKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSE 334 (371)
Q Consensus 296 ~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~ 334 (371)
+++. +++|.+=|-+++.+.+.+++.+-++|.|.--++-.
T Consensus 682 ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l 721 (765)
T PRK08255 682 IRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHL 721 (765)
T ss_pred HHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence 6664 67888877889999999998556699998765433
No 285
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=32.69 E-value=4.4e+02 Score=25.00 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=46.7
Q ss_pred CChHHHHHHHHhC-CeEE--EecccCChHHHHHHHHhcCceEEEe-------CChHHHHH-HHHhhhccchhhhhhhhhc
Q 017440 288 KNPGAIKKIKEAK-LCLV--SYGELNNVPEVVYMQRFMGIEGVIV-------DLVSEITE-AVSDFIKNEEEIKEEIVFA 356 (371)
Q Consensus 288 ~~~~~v~~~~~~G-l~v~--~wgtvn~~~~~~~l~~~~GVdgIiT-------D~p~~l~~-~l~~~~~~~~~~~~~~~~~ 356 (371)
..-++++.+++.+ ++|. +-|-+.+++++..++ ++|+|||+. ++|....+ +++.......|..-..+..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~~e~s~ 262 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSSNPEKLAKAIVEATTHYDNPEKLAEVSK 262 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHc
Confidence 3557888888874 7886 666688899988886 799999953 45665544 4444445555555444544
Q ss_pred ccC
Q 017440 357 EDG 359 (371)
Q Consensus 357 ~~~ 359 (371)
+-|
T Consensus 263 ~~~ 265 (287)
T TIGR00343 263 DLG 265 (287)
T ss_pred ccc
Confidence 443
No 286
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=32.64 E-value=4.7e+02 Score=26.79 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=31.1
Q ss_pred cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCce
Q 017440 287 FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIE 325 (371)
Q Consensus 287 ~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVd 325 (371)
++.+..++.+|..|+++.+=| |.+.++..++ ++.||+
T Consensus 458 ~I~~hII~MAk~L~L~iVaEG-VEteeQ~~~L-R~~Gv~ 494 (524)
T COG4943 458 LIAPHIIEMAKSLGLKIVAEG-VETEEQVDWL-RKRGVH 494 (524)
T ss_pred hhHHHHHHHHHHcCCcEEeec-ccHHHHHHHH-HHcCCc
Confidence 467889999999999999995 8888888776 478876
No 287
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=32.53 E-value=2.4e+02 Score=24.59 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhCCCceEeccccc------ccCChHHHHHHHHhC-CeEE-EecccCChHHHHHHHHhcCceEEEe
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA------IFKNPGAIKKIKEAK-LCLV-SYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~v~~~~~~G-l~v~-~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
.+.+.++.+.+.|++.+.+.... .....+.++.+++.- ..+. .. .+|++.+....+.+.|+|||+.
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l-~~~d~~~~~~~~~~~g~dgv~v 86 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHL-MVENPERYIEAFAKAGADIITF 86 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEe-eeCCHHHHHHHHHHcCCCEEEE
Confidence 34555666667777766652211 112346677777652 4432 24 5666554444444678888743
No 288
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=32.37 E-value=2e+02 Score=26.51 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=36.5
Q ss_pred CChHHHHHHH-HhCCeEEEecccCChHHHHHHHHhcCceEEEeC-------ChHHHHHHHHh
Q 017440 288 KNPGAIKKIK-EAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD-------LVSEITEAVSD 341 (371)
Q Consensus 288 ~~~~~v~~~~-~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD-------~p~~l~~~l~~ 341 (371)
.++..++.+. +..++|.+=.-+-.+.+..+.+ ++|+|+|..| +|..+.+..+.
T Consensus 162 ~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-ElG~daVLvNTAiA~A~dPv~MA~Af~~ 222 (247)
T PF05690_consen 162 QNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLVNTAIAKAKDPVAMARAFKL 222 (247)
T ss_dssp STHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HTT-SEEEESHHHHTSSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-HcCCceeehhhHHhccCCHHHHHHHHHH
Confidence 4777777776 5578888765578888888885 8999999987 46666665543
No 289
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=32.20 E-value=5.1e+02 Score=26.70 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc-------ccc-------cCCh--HHHH
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV-------RAI-------FKNP--GAIK 294 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------~~~-------~~~~--~~v~ 294 (371)
+.++++|+..|+.++..- + + .+.+++ ..+...|+++|.+.. ... ..+. .+-+
T Consensus 278 ~~i~~ik~~~p~~~vi~g--~-------v--~t~e~a-~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~ 345 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGG--N-------V--VTMYQA-QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVAS 345 (505)
T ss_pred HHHHHHHHhCCCCcEEEe--c-------C--CCHHHH-HHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHH
Confidence 678888888777665431 1 0 233443 445578998885421 000 0011 2333
Q ss_pred HHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 295 KIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 295 ~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.+++.+++|++=|-+.+..++.+.+ .+|+++++.-.
T Consensus 346 ~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs 381 (505)
T PLN02274 346 IAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGS 381 (505)
T ss_pred HHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEch
Confidence 3445579999888899999998987 79999997654
No 290
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=32.19 E-value=3.4e+02 Score=23.56 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHCCCCCe--EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEE
Q 017440 228 FQPDAALLIRKLQSTYPV--FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~ 305 (371)
+..+.++.+++.. +.+. .+.+. ...+.++.+...|++++.++....-...+.++.+++.|+.+..
T Consensus 44 ~~~~~~~~i~~~~-~~~~~v~l~~~------------d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~ 110 (211)
T cd00429 44 FGPPVVKALRKHT-DLPLDVHLMVE------------NPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGV 110 (211)
T ss_pred cCHHHHHHHHhhC-CCcEEEEeeeC------------CHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEE
Confidence 4456777777664 3343 23222 1233466677889999766543211224678888899988766
Q ss_pred e
Q 017440 306 Y 306 (371)
Q Consensus 306 w 306 (371)
-
T Consensus 111 ~ 111 (211)
T cd00429 111 A 111 (211)
T ss_pred E
Confidence 5
No 291
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.11 E-value=1.7e+02 Score=28.52 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=34.6
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
++.|...+++|||+....+ .....+.+...+..|.+ ++++.+++.... ..|+|.|..
T Consensus 210 vdlAl~~~aDGVHLgq~dl--~~~~aR~llg~~~iIG~--S~Hs~~e~~~A~-~~GaDYI~l 266 (347)
T PRK02615 210 VDIALAVDADGVHLGQEDL--PLAVARQLLGPEKIIGR--STTNPEEMAKAI-AEGADYIGV 266 (347)
T ss_pred HHHHHHcCCCEEEeChhhc--CHHHHHHhcCCCCEEEE--ecCCHHHHHHHH-HcCCCEEEE
Confidence 4567778888998764432 22223222223344444 467788887775 689999863
No 292
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=31.88 E-value=2.7e+02 Score=24.91 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcC-ceEEEeCC
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMG-IEGVIVDL 331 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~G-VdgIiTD~ 331 (371)
+..+..+.+...|+..+...... .-.+-++++.+.+. +.++.+-|-+.+.+++.+++ +.| +||++.-+
T Consensus 147 ~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~-~~g~~~gv~vg~ 221 (233)
T PRK00748 147 TAEDLAKRFEDAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALK-GLGAVEGVIVGR 221 (233)
T ss_pred CHHHHHHHHHhcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCccEEEEEH
Confidence 34556666777777754443211 11234677777765 68888888899999999986 577 99998654
No 293
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=31.68 E-value=1.8e+02 Score=25.32 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCeEEEecccCC-hHHHHHHHHhcCceEEEeCChHHHHHHHHhhhcc
Q 017440 291 GAIKKIKEAKLCLVSYGELNN-VPEVVYMQRFMGIEGVIVDLVSEITEAVSDFIKN 345 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~-~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~~~~ 345 (371)
+.++.+++.|++|++.+ +.. .+..+++...-|=......++..+.+++.+...|
T Consensus 127 ~~~~~l~~~~I~v~~Ig-iG~~~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~~~~p 181 (183)
T cd01453 127 ETIDKLKKENIRVSVIG-LSAEMHICKEICKATNGTYKVILDETHLKELLLEHVTP 181 (183)
T ss_pred HHHHHHHHcCcEEEEEE-echHHHHHHHHHHHhCCeeEeeCCHHHHHHHHHhcCCC
Confidence 56788999999999994 553 3445555555677778878888998888876655
No 294
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=31.52 E-value=2.7e+02 Score=25.78 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcc-----cCCC-Cccc----HHHHHHHHHhCCCceEecccccccCC--------h
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQT-----CTDV-RRSS----LDEAIKVCLAGGLQGIVSEVRAIFKN--------P 290 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~-----~~~~-~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~--------~ 290 (371)
.++.+..+|++.|++++++-+++.... +... +... ....+++.+..|++||-++++....+ .
T Consensus 57 ~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~ 136 (253)
T cd06544 57 TPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIG 136 (253)
T ss_pred CHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHH
Confidence 356778888888998888877664321 1111 1011 23457788999999999998864222 2
Q ss_pred HHHHHHHHhCCeE
Q 017440 291 GAIKKIKEAKLCL 303 (371)
Q Consensus 291 ~~v~~~~~~Gl~v 303 (371)
++.+.+++.|+..
T Consensus 137 ~l~~~l~~~~~lt 149 (253)
T cd06544 137 QLITELKNNGVIK 149 (253)
T ss_pred HHHHHhhhcCCeE
Confidence 4667777777543
No 295
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=31.51 E-value=4e+02 Score=24.17 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
+....++.+...|+ ++-+ .++.-++.+.+.|.. +..-|...+.+++..++ +.|+..|..|..+++..+.
T Consensus 31 ~~~~vl~~l~~~g~-g~dv------~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~~a~-~~~~~~i~vDs~~el~~l~ 102 (251)
T PF02784_consen 31 PNPAVLKILAEEGC-GFDV------ASPGELELALKAGFPPDRIIFTGPGKSDEELEEAI-ENGVATINVDSLEELERLA 102 (251)
T ss_dssp --HHHHHHHHHTTC-EEEE------SSHHHHHHHHHTTTTGGGEEEECSS--HHHHHHHH-HHTESEEEESSHHHHHHHH
T ss_pred CCHHHHHHHHHcCC-ceEE------ecccchHHHHhhhccccceeEecCcccHHHHHHHH-hCCceEEEeCCHHHHHHHh
Confidence 44556677777775 2221 366678888888863 54444666777887775 5799999999999988765
Q ss_pred Hh
Q 017440 340 SD 341 (371)
Q Consensus 340 ~~ 341 (371)
+-
T Consensus 103 ~~ 104 (251)
T PF02784_consen 103 EL 104 (251)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 296
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=31.50 E-value=2.1e+02 Score=27.96 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=38.0
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHH--HhcCceEEE--eCChHHHHHHHHhhh
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQ--RFMGIEGVI--VDLVSEITEAVSDFI 343 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~--~~~GVdgIi--TD~p~~l~~~l~~~~ 343 (371)
..++..++..+-++++- +++.++++-++ .+.|+|||+ |+.|..++++.....
T Consensus 113 EnliA~~~~~~~~i~a~--v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~ 168 (354)
T PF01959_consen 113 ENLIAALQGSSTKIIAV--VADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLK 168 (354)
T ss_pred HHHHHHhcCCCceEEEE--eCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 45778888888888885 77888776543 258999996 667888887765443
No 297
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=31.43 E-value=3.6e+02 Score=24.60 Aligned_cols=83 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceEecc------cccccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEE-----e-C
Q 017440 264 LDEAIKVCLAGGLQGIVSE------VRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVI-----V-D 330 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi-----T-D 330 (371)
+.+-++.+.. +++.+|.+ ...+...+..++.+++. .+.+-+.--+.+++.+...+.+.|+|.|+ + +
T Consensus 17 l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~ 95 (229)
T PRK09722 17 FKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETING 95 (229)
T ss_pred HHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcc
Q ss_pred ChHHHHHHHHhhhccch
Q 017440 331 LVSEITEAVSDFIKNEE 347 (371)
Q Consensus 331 ~p~~l~~~l~~~~~~~~ 347 (371)
+|..+.+.+++....+.
T Consensus 96 ~~~~~i~~Ik~~G~kaG 112 (229)
T PRK09722 96 QAFRLIDEIRRAGMKVG 112 (229)
T ss_pred hHHHHHHHHHHcCCCEE
No 298
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=31.21 E-value=4.1e+02 Score=24.21 Aligned_cols=83 Identities=16% Similarity=0.065 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecc---cccccCChHHHHHHHHhCCeEEEe
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE---VRAIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
.+.++.+++. .++|+.++..... . .....+.++.+...|++++..+ ++..--..++++.++++|+++..-
T Consensus 63 ~~~v~~vr~~-~~~Pl~lM~y~n~-----~-~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 63 WPLLEEVRKD-VSVPIILMTYLED-----Y-VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred HHHHHHHhcc-CCCCEEEEEecch-----h-hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 6788888753 6788754332211 1 1245666788889999998876 221111246889999999997765
Q ss_pred cccCC-hHHHHHHH
Q 017440 307 GELNN-VPEVVYMQ 319 (371)
Q Consensus 307 gtvn~-~~~~~~l~ 319 (371)
-+..+ .+.+..++
T Consensus 136 v~p~T~~e~l~~~~ 149 (244)
T PRK13125 136 TSPKFPDLLIHRLS 149 (244)
T ss_pred ECCCCCHHHHHHHH
Confidence 12333 34455554
No 299
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=31.09 E-value=3.7e+02 Score=23.65 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHCCCCCe--EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEE
Q 017440 228 FQPDAALLIRKLQSTYPV--FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~ 305 (371)
+..+.++.+++..+ .+. .+++. ...+.++.+...|++++.++....-.....++.+++.|+.+..
T Consensus 48 ~~~~~~~~i~~~~~-~~~~v~l~v~------------d~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~ 114 (220)
T PRK05581 48 IGPPVVEAIRKVTK-LPLDVHLMVE------------NPDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGL 114 (220)
T ss_pred cCHHHHHHHHhcCC-CcEEEEeeeC------------CHHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEE
Confidence 34666777776554 333 23332 2233345666889999665543211124677888999988766
Q ss_pred e
Q 017440 306 Y 306 (371)
Q Consensus 306 w 306 (371)
-
T Consensus 115 ~ 115 (220)
T PRK05581 115 V 115 (220)
T ss_pred E
Confidence 4
No 300
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=31.02 E-value=2.7e+02 Score=29.25 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCC-cccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEE-
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGA-QTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLV- 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~- 304 (371)
.++.++.+++..|+.++..+..... ..+.....+-....++.+...|++.+...... .-.-...++.++++|+.+.
T Consensus 57 ~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 136 (582)
T TIGR01108 57 PWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQG 136 (582)
T ss_pred HHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEE
Confidence 4778888988888888877654321 11111111124556677788888876543221 0012357789999998875
Q ss_pred --EecccC---ChHHHHHH---HHhcCceEEEe-C-----ChHHHHHHHHhh
Q 017440 305 --SYGELN---NVPEVVYM---QRFMGIEGVIV-D-----LVSEITEAVSDF 342 (371)
Q Consensus 305 --~wgtvn---~~~~~~~l---~~~~GVdgIiT-D-----~p~~l~~~l~~~ 342 (371)
+| |.. +.+.+.++ +.++|+|.|+- | .|..+.++++..
T Consensus 137 ~i~~-t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 137 TISY-TTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred EEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHH
Confidence 35 432 22332222 24689998853 4 367666666554
No 301
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=30.67 E-value=3.9e+02 Score=23.76 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcccCCCC-cccHHHHHHHHHhCCCceEecccccc---cCChHHHHHHHHhCCeEE
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVR-RSSLDEAIKVCLAGGLQGIVSEVRAI---FKNPGAIKKIKEAKLCLV 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~v~~~~~~Gl~v~ 304 (371)
..+.++.+|+.. ++|+.=++.....- .++. ..++.+..+. ...|++.|.++...- ..-.++++++|+++..++
T Consensus 20 ~~~dI~aik~~v-~lPIIGi~K~~y~~-~~V~ITPT~~ev~~l-~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~M 96 (192)
T PF04131_consen 20 GVEDIRAIKKAV-DLPIIGIIKRDYPD-SDVYITPTLKEVDAL-AEAGADIIALDATDRPRPETLEELIREIKEKYQLVM 96 (192)
T ss_dssp SHHHHHHHHTTB--S-EEEE-B-SBTT-SS--BS-SHHHHHHH-HHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEE
T ss_pred CHHHHHHHHHhc-CCCEEEEEeccCCC-CCeEECCCHHHHHHH-HHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEe
Confidence 467788888764 78887666432110 0111 1245555444 468999988775321 112579999999996666
Q ss_pred EecccCChHHHHHHHHhcCceEEEe
Q 017440 305 SYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 305 ~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+ .+.+.++..... ++|+|.|-|
T Consensus 97 A--Dist~ee~~~A~-~~G~D~I~T 118 (192)
T PF04131_consen 97 A--DISTLEEAINAA-ELGFDIIGT 118 (192)
T ss_dssp E--E-SSHHHHHHHH-HTT-SEEE-
T ss_pred e--ecCCHHHHHHHH-HcCCCEEEc
Confidence 6 478888888875 799999876
No 302
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=30.41 E-value=2.4e+02 Score=29.71 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCC-cccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEE
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGA-QTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLV 304 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~ 304 (371)
-.++.++.+++..|+.++..+..... ..|.....+-....++.+.+.|++.+...... .-.-...++.++++|+.+.
T Consensus 61 dp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~ 140 (592)
T PRK09282 61 DPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQ 140 (592)
T ss_pred cHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEE
Confidence 34777888888888888776654321 11111111224556777788888876543221 1112356889999998874
Q ss_pred ---EecccC---ChHHHHH---HHHhcCceEEEe-C-----ChHHHHHHHHhh
Q 017440 305 ---SYGELN---NVPEVVY---MQRFMGIEGVIV-D-----LVSEITEAVSDF 342 (371)
Q Consensus 305 ---~wgtvn---~~~~~~~---l~~~~GVdgIiT-D-----~p~~l~~~l~~~ 342 (371)
+| |.. +.+.+.+ .+.++|+|.|.- | .|..+.++++..
T Consensus 141 ~~i~~-t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 141 GTISY-TTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred EEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHH
Confidence 34 332 2232222 224689998754 3 266666665544
No 303
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=30.31 E-value=6.3e+02 Score=26.56 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 284 (371)
.+.+.+.+.+.+.+. ++++.-.|++.++.+++. +.++.+- +. +-.+.++.+.-.+++.+.....
T Consensus 410 r~G~~va~~L~~~g~--~vvvID~d~~~v~~~~~~--g~~v~~G--Da----------t~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 410 RFGQVIGRLLMANKM--RITVLERDISAVNLMRKY--GYKVYYG--DA----------TQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred hHHHHHHHHHHhCCC--CEEEEECCHHHHHHHHhC--CCeEEEe--eC----------CCHHHHHhcCCccCCEEEEEeC
Confidence 345566666666543 466666788888877653 4444331 11 1122233332233444443333
Q ss_pred cccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 285 AIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
....+-..+..+++.+-.+.++...+|.+..+.+. +.|+|.|+.+.-+..
T Consensus 474 d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~-~~Ga~~vv~e~~es~ 523 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILARARGRVEAHELL-QAGVTQFSRETFSSA 523 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH-hCCCCEEEccHHHHH
Confidence 22223456677787764444442467777777774 799999987754433
No 304
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=30.23 E-value=4.8e+02 Score=24.69 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=44.3
Q ss_pred ChHHHHHHHHh-CCeEE--EecccCChHHHHHHHHhcCceEEEe-------CChHHH-HHHHHhhhccchhhhhhhhhc
Q 017440 289 NPGAIKKIKEA-KLCLV--SYGELNNVPEVVYMQRFMGIEGVIV-------DLVSEI-TEAVSDFIKNEEEIKEEIVFA 356 (371)
Q Consensus 289 ~~~~v~~~~~~-Gl~v~--~wgtvn~~~~~~~l~~~~GVdgIiT-------D~p~~l-~~~l~~~~~~~~~~~~~~~~~ 356 (371)
..++++.+.+. .++|. +-|-+.+++.+..++ +.|+|||.. ++|... .++.+....+..|.+...+..
T Consensus 182 d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~-e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~~~~~~~~~e~~~ 259 (283)
T cd04727 182 PYELVKETAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAEVSE 259 (283)
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 45778888876 48886 666687888888886 799999853 345544 444444555555655444433
No 305
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=30.05 E-value=2.1e+02 Score=27.15 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=48.4
Q ss_pred ChHHHHHHHHhC-CeEE--EecccCChHHHHHHHHhcCceEEEe-------CChHHH-HHHHHhhhccchhhhhhhhhcc
Q 017440 289 NPGAIKKIKEAK-LCLV--SYGELNNVPEVVYMQRFMGIEGVIV-------DLVSEI-TEAVSDFIKNEEEIKEEIVFAE 357 (371)
Q Consensus 289 ~~~~v~~~~~~G-l~v~--~wgtvn~~~~~~~l~~~~GVdgIiT-------D~p~~l-~~~l~~~~~~~~~~~~~~~~~~ 357 (371)
+-++++.+++.+ ++|. +-|-+.+++++..++ ++|+|+|+. ++|... +++.+....+..|..-..+..+
T Consensus 191 ~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~~~~~~~~~~s~~ 269 (293)
T PRK04180 191 PYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFVGSGIFKSGDPEKRARAIVEATTHYDDPEVLAEVSKG 269 (293)
T ss_pred CHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHcCCHHHHHHHHcc
Confidence 557888888874 7886 666788899988886 799999964 455554 4445555556666666566555
Q ss_pred cC
Q 017440 358 DG 359 (371)
Q Consensus 358 ~~ 359 (371)
-|
T Consensus 270 ~~ 271 (293)
T PRK04180 270 LG 271 (293)
T ss_pred cc
Confidence 55
No 306
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=30.04 E-value=3.5e+02 Score=23.00 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCC--CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecc--
Q 017440 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQST--YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSE-- 282 (371)
Q Consensus 207 ~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 282 (371)
...+++.+.+.+.. -+++.. ..++.+++..++ +|+..-....... .......+..+.+.+.|++++.+.
T Consensus 15 ~~~~~~~~~~~gv~-gi~~~g---~~i~~~~~~~~~~~~~v~~~v~~~~~~---~~~~~~~~~a~~a~~~Gad~i~v~~~ 87 (201)
T cd00945 15 IAKLCDEAIEYGFA-AVCVNP---GYVRLAADALAGSDVPVIVVVGFPTGL---TTTEVKVAEVEEAIDLGADEIDVVIN 87 (201)
T ss_pred HHHHHHHHHHhCCc-EEEECH---HHHHHHHHHhCCCCCeEEEEecCCCCC---CcHHHHHHHHHHHHHcCCCEEEEecc
Confidence 44555555556654 344443 777777766654 6665544332100 000123445667788899887643
Q ss_pred cccccCC------hHHHHHHHHh---CCeEEEecccC----ChHHHHHH---HHhcCceEEEeCC
Q 017440 283 VRAIFKN------PGAIKKIKEA---KLCLVSYGELN----NVPEVVYM---QRFMGIEGVIVDL 331 (371)
Q Consensus 283 ~~~~~~~------~~~v~~~~~~---Gl~v~~wgtvn----~~~~~~~l---~~~~GVdgIiTD~ 331 (371)
+... .+ -+.++.+.++ ++.+++| ..- +.+...++ ....|+++|-+-.
T Consensus 88 ~~~~-~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 88 IGSL-KEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHH-hCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 2221 12 2445555555 8999988 431 34444443 2358999986644
No 307
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=29.88 E-value=4.1e+02 Score=26.51 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=40.9
Q ss_pred HHHHHHhCCCceEecccccccC-ChHHHHHHHHhCCeEEE--ecccCCh-HHHHHHHHhcCceEEEeC
Q 017440 267 AIKVCLAGGLQGIVSEVRAIFK-NPGAIKKIKEAKLCLVS--YGELNNV-PEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~~~-~~~~v~~~~~~Gl~v~~--wgtvn~~-~~~~~l~~~~GVdgIiTD 330 (371)
.++.+...|+++++.+...... -.+.++.+++.|+.+.. . +.++. +.+..+. +.|+|.|...
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~-s~~t~~e~~~~a~-~~GaD~I~~~ 138 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI-NVPDPVKRAVELE-ELGVDYINVH 138 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec-CCCCHHHHHHHHH-hcCCCEEEEE
Confidence 4567788999999865331100 13677889999998775 5 55553 3345554 6899999754
No 308
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=29.86 E-value=3.9e+02 Score=27.23 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc-------c-----cCChHHH----
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-------I-----FKNPGAI---- 293 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~-----~~~~~~v---- 293 (371)
.+.++.+++..|+.++.. ... .+.+. ...+...|+++|...+.. . ..+-+.+
T Consensus 257 l~~i~~i~~~~p~~~vi~--g~v---------~t~e~-a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~ 324 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIA--GNV---------ATAEA-ARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAA 324 (486)
T ss_pred HHHHHHHHhhCCCCCEEE--ecc---------CCHHH-HHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHH
Confidence 456777777777777654 211 12333 344557788887542110 0 0011223
Q ss_pred HHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 294 KKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 294 ~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
+.+++.|+.|++=|-+.++.++.+.+ .+|+|.++--.
T Consensus 325 ~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~ 361 (486)
T PRK05567 325 EAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGS 361 (486)
T ss_pred HHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECc
Confidence 33345678888877788999998887 79999998654
No 309
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=29.74 E-value=5.5e+02 Score=25.26 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=62.9
Q ss_pred ecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc--c-cc---CChHHHHHHHHh
Q 017440 226 SSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--A-IF---KNPGAIKKIKEA 299 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~-~~---~~~~~v~~~~~~ 299 (371)
.+++|+.++.+++.. +.|+..- +. .. .+..+.+...|+++|.+... . +. .+-+.+.+++++
T Consensus 213 ~~~~w~~i~~l~~~~-~~PvivK--Gv---------~~-~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~a 279 (367)
T TIGR02708 213 QKLSPRDIEEIAGYS-GLPVYVK--GP---------QC-PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEA 279 (367)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEe--CC---------CC-HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHH
Confidence 568899999998764 4566532 21 12 33456677889997744321 1 10 111344455442
Q ss_pred ---CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 300 ---KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 300 ---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
.+.|++-|-+.+..++.+.+ .+|+|+|+.-+|-...
T Consensus 280 v~~~i~vi~dGGIr~g~Dv~KaL-alGAd~V~igR~~l~~ 318 (367)
T TIGR02708 280 VDKRVPIVFDSGVRRGQHVFKAL-ASGADLVALGRPVIYG 318 (367)
T ss_pred hCCCCcEEeeCCcCCHHHHHHHH-HcCCCEEEEcHHHHHH
Confidence 27888888888889988887 6999999999995543
No 310
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.60 E-value=3.8e+02 Score=23.38 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEeccc
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGEL 309 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtv 309 (371)
.+.+..+++..+....+.-.- -..+-.+.|...|+++++.... +++.++..+.++...+. | +
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtv------------l~~d~~~~A~~~gAdgv~~p~~----~~~~~~~~~~~~~~~i~-G-~ 112 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTI------------LTLEDLEEAIAAGAQFCFTPHV----DPELIEAAVAQDIPIIP-G-A 112 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEE------------EcHHHHHHHHHcCCCEEECCCC----CHHHHHHHHHcCCCEEc-C-c
Confidence 455666667666543331110 0123457788899999987643 67888888889886543 4 6
Q ss_pred CChHHHHHHHHhcCceEEEeCChHHH---HHHHHhhhc
Q 017440 310 NNVPEVVYMQRFMGIEGVIVDLVSEI---TEAVSDFIK 344 (371)
Q Consensus 310 n~~~~~~~l~~~~GVdgIiTD~p~~l---~~~l~~~~~ 344 (371)
+++.++.+.. +.|+|.|-- ||... .++++....
T Consensus 113 ~t~~e~~~A~-~~Gadyv~~-Fpt~~~~G~~~l~~~~~ 148 (187)
T PRK07455 113 LTPTEIVTAW-QAGASCVKV-FPVQAVGGADYIKSLQG 148 (187)
T ss_pred CCHHHHHHHH-HCCCCEEEE-CcCCcccCHHHHHHHHh
Confidence 7888887775 699999976 77632 344444433
No 311
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=29.47 E-value=63 Score=33.08 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
.+|+.++..|+...+- ...-..+|.++.+.-+||+|||.+-+.+.
T Consensus 132 ~lI~~~r~~nVe~IVA-PyEADAQlayL~~~~~i~~IITEDSDLl~ 176 (556)
T KOG2518|consen 132 KLIQYLRSQNVEYIVA-PYEADAQLAYLEREGIVDAIITEDSDLLV 176 (556)
T ss_pred HHHHHHHHcCCceEec-CccccchhHHHHhcCcceEEEeccccccc
Confidence 5788899999887665 44555778888766789999999877653
No 312
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.45 E-value=4.9e+02 Score=24.58 Aligned_cols=111 Identities=13% Similarity=0.208 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-------H----HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-------D----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-------~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
.++..+++.-++. ..+++++.... + .+..+.+. ..+|+++=.+-.. ++ +.+..|..
T Consensus 29 e~~~avi~AAee~--~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~-~~VPValHLDH~~---------~~-e~i~~ai~ 95 (284)
T PRK12737 29 ETLQVVVETAAEL--RSPVILAGTPGTFSYAGTDYIVAIAEVAARK-YNIPLALHLDHHE---------DL-DDIKKKVR 95 (284)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcCccHHhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 3456666655554 34566664321 1 12222222 3578877555431 22 34566778
Q ss_pred CCCceEecccccc------cCChHHHHHHHHhCCeEEE----e-cc------------cCChHHHHHHHHhcCceEEE
Q 017440 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----Y-GE------------LNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 274 ~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-gt------------vn~~~~~~~l~~~~GVdgIi 328 (371)
.|+++|..+.+.+ ..|.+.++.+|+.|..|=+ = |. .-+++++.++..+.|||.+-
T Consensus 96 ~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LA 173 (284)
T PRK12737 96 AGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLA 173 (284)
T ss_pred cCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEe
Confidence 8998888775542 3467899999999987632 1 11 11567777776667777653
No 313
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.40 E-value=2.3e+02 Score=26.36 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHHHHh-CCeEEE----ecccCChHHHHHHHHhcCceEEEe
Q 017440 291 GAIKKIKEA-KLCLVS----YGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 291 ~~v~~~~~~-Gl~v~~----wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
++++.+++. ++.|.+ ..+.++..++.+.+.+.|+|+|.+
T Consensus 152 eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 152 NLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred HHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 356666665 444443 102112233334345689998875
No 314
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=29.02 E-value=5.4e+02 Score=25.61 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 265 DEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 265 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
...++.....|+ ++.+ .+..-++.+++.|.. +...|.....+++..++ +.|+ .+..|.++.+..+.
T Consensus 50 ~~il~~l~~~G~-g~dv------aS~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~-~~gi-~i~vDs~~el~~l~ 118 (423)
T cd06842 50 LALVRAAAAAGI-GVDV------ASLAELRQALAAGVRGDRIVATGPAKTDEFLWLAV-RHGA-TIAVDSLDELDRLL 118 (423)
T ss_pred HHHHHHHHHcCC-CEEE------CCHHHHHHHHHCCCCCCeEEEECCCCCHHHHHHHH-hCCC-EEEECCHHHHHHHH
Confidence 344455555555 3321 245556667777753 55554344444455554 5777 47777777776654
No 315
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=28.43 E-value=3e+02 Score=25.82 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=41.1
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHH-------hcCceEEEeCChHHHHHHHH
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQR-------FMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~-------~~GVdgIiTD~p~~l~~~l~ 340 (371)
+...+..|+.......+.+--.......+.+.|+.||+| --.+.+++.+.+. ..+.+-|+-|--+...-+-.
T Consensus 60 ~~tL~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~-~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~ 138 (268)
T PF05221_consen 60 AETLKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAW-KGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHT 138 (268)
T ss_dssp HHHHHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE--TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHH
T ss_pred HHHHHHcCCeEEEecCCCcccchHHHHHhccCCceEEEe-CCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHH
Confidence 444567787655443332212346777888999999999 5666777766542 13567777776666554433
No 316
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.16 E-value=4.6e+02 Score=23.83 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhCCCceEe-ccccc----ccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 263 SLDEAIKVCLAGGLQGIV-SEVRA----IFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~-~~~~~----~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
++.+.++.+...|+..+. .+... .-.+-++++.+.+....+.+-|-+.+.+++.++. .+|++|++.=
T Consensus 147 ~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~-~~G~~gvivg 218 (232)
T PRK13586 147 EVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLK-NVGFDYIIVG 218 (232)
T ss_pred CHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HCCCCEEEEe
Confidence 466777777888875433 22211 1235567888876654465556789999998886 6999999864
No 317
>PRK10060 RNase II stability modulator; Provisional
Probab=27.69 E-value=4.5e+02 Score=27.85 Aligned_cols=112 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCC-CCeEEecCC-------H---HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQG-RPIMFSSFQ-------P---DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~-~~v~i~Sf~-------~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
.+.+.+.+.+.+++.. .++.+.--. . ..+..+++. ++.+++--.+ +-...+.+.+.
T Consensus 508 ~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~--G~~ialDdfG-----------tg~ssl~~L~~ 574 (663)
T PRK10060 508 TIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQL--GAQVHLDDFG-----------TGYSSLSQLAR 574 (663)
T ss_pred cHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHC--CCEEEEECCC-----------CchhhHHHHHh
Confidence 4677777888888753 344433222 1 123333332 4555442111 11223455556
Q ss_pred CCCceEecccccc----------cCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 274 GGLQGIVSEVRAI----------FKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 274 ~~~~~v~~~~~~~----------~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..++.+-.+.... .+-..++..+|+.|++|.+=| |.+.++...+ +.+|||.+.=.+
T Consensus 575 l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG-VEt~~q~~~l-~~~G~d~~QGy~ 640 (663)
T PRK10060 575 FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG-VETAKEDAFL-TKNGVNERQGFL 640 (663)
T ss_pred CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec-CCCHHHHHHH-HHcCCCEEecCc
Confidence 6666665542211 112357888899999999995 9998888777 589998775543
No 318
>PRK08005 epimerase; Validated
Probab=27.58 E-value=4.5e+02 Score=23.59 Aligned_cols=68 Identities=13% Similarity=0.033 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHCCCCCe-EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEE
Q 017440 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVS 305 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~ 305 (371)
+|.+..++.+++. .+.|. .-|+- ......++.....|++.+..+++..--..+.++.+|++|.+++.
T Consensus 44 tfG~~~i~~l~~~-t~~~~DvHLMv-----------~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~Gl 111 (210)
T PRK08005 44 TFGMKTIQAVAQQ-TRHPLSFHLMV-----------SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGL 111 (210)
T ss_pred ccCHHHHHHHHhc-CCCCeEEEecc-----------CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEE
Confidence 6788889988864 33332 11211 12344455556778888888887432224788999999998865
Q ss_pred e
Q 017440 306 Y 306 (371)
Q Consensus 306 w 306 (371)
=
T Consensus 112 A 112 (210)
T PRK08005 112 A 112 (210)
T ss_pred E
Confidence 3
No 319
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=4.7e+02 Score=25.51 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhC--CeEEEec--ccCChHHHHHHHHhcCceEEEeCCh
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAK--LCLVSYG--ELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~G--l~v~~wg--tvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
+.+.++.+...|.+++.+ .++.++..+++.+ +++++-. ++.+......+ .++|+..++-=+-
T Consensus 81 ~~~~l~~l~e~GvDaviv------~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~-~~~G~~rvVl~rE 146 (347)
T COG0826 81 LERYLDRLVELGVDAVIV------ADPGLIMLARERGPDLPIHVSTQANVTNAETAKFW-KELGAKRVVLPRE 146 (347)
T ss_pred HHHHHHHHHHcCCCEEEE------cCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHH-HHcCCEEEEeCcc
Confidence 556777888899998864 3889999999999 8887651 35677777666 4799665554443
No 320
>PLN02229 alpha-galactosidase
Probab=27.52 E-value=1.9e+02 Score=29.15 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=29.6
Q ss_pred hHHHHHHHHhCCeEEEecc------------cC-ChHHHHHHHHhcCceEEEeCCh
Q 017440 290 PGAIKKIKEAKLCLVSYGE------------LN-NVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgt------------vn-~~~~~~~l~~~~GVdgIiTD~p 332 (371)
+.+.+.+|++|++...|.. .. ...+++.+ .++|||.|=.|+.
T Consensus 131 k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~e~~DA~~f-A~WGVDylK~D~C 185 (427)
T PLN02229 131 KLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFHEVDDADIF-ASWGVDYLKYDNC 185 (427)
T ss_pred HHHHHHHHHCCCceEEeccCCCcccCCCCCCccHHHHHHHHH-HHcCCCEEEecCC
Confidence 3688999999999999831 11 12334444 5799999988875
No 321
>PLN02623 pyruvate kinase
Probab=27.52 E-value=6e+02 Score=26.74 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=41.0
Q ss_pred hHHHHHHHHhCCeEEEecc------cC--Ch-----HHHHHHHHhcCceEEEe-------CChHHHHHHHHhhhccch
Q 017440 290 PGAIKKIKEAKLCLVSYGE------LN--NV-----PEVVYMQRFMGIEGVIV-------DLVSEITEAVSDFIKNEE 347 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgt------vn--~~-----~~~~~l~~~~GVdgIiT-------D~p~~l~~~l~~~~~~~~ 347 (371)
.+.++.++++|+.+++- | ++ .+ .+...++ ..|+|+|+- .||.+..+.+.+....++
T Consensus 366 k~Ii~~~~~~gKpviva-TQMLESMi~~~~PTRAEv~Dva~av-~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE 441 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVA-TNMLESMIVHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 441 (581)
T ss_pred HHHHHHHHHhCCCEEEE-CchhhhcccCCCCCchhHHHHHHHH-HcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 46888899999999976 5 21 22 2555554 589999865 589999999888766544
No 322
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.50 E-value=4.3e+02 Score=23.62 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=29.9
Q ss_pred hHHHHHHHHhCCeEEEecccCC-------hHHHHHHHHhcCceEEEe-CChHHH
Q 017440 290 PGAIKKIKEAKLCLVSYGELNN-------VPEVVYMQRFMGIEGVIV-DLVSEI 335 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~-------~~~~~~l~~~~GVdgIiT-D~p~~l 335 (371)
....+.++++|+.++.+ .-.+ .+++.+.+.++++|-|++ -+...+
T Consensus 39 ~~~~~~A~~~gIp~~~~-~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~il 91 (207)
T PLN02331 39 CGGAEYARENGIPVLVY-PKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLI 91 (207)
T ss_pred ChHHHHHHHhCCCEEEe-ccccCCCcccchHHHHHHHHhcCCCEEEEeCcchhC
Confidence 45678889999999887 3322 334444456789998888 444444
No 323
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=27.28 E-value=51 Score=31.55 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=15.9
Q ss_pred hHHHHHHHHhCCeEEEe
Q 017440 290 PGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~w 306 (371)
..+|+++|++|++|++|
T Consensus 73 ~~~I~eaHkrGlevHAW 89 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAW 89 (311)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 57899999999999999
No 324
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=26.95 E-value=24 Score=27.65 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHhhhccchhhhhhhhhcccCceeeccCCCCC
Q 017440 338 AVSDFIKNEEEIKEEIVFAEDGKLLVKNKSPIL 370 (371)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (371)
+|..+...+.+++.+.+.++-++|+++.+||+|
T Consensus 23 Fl~~Lv~ka~p~~v~~Ll~~l~~l~v~dkppsi 55 (98)
T PF14969_consen 23 FLQDLVEKAVPGKVNGLLDSLENLSVQDKPPSI 55 (98)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCcCCCCCCcH
Confidence 344444456777899999999999999999986
No 325
>PRK00865 glutamate racemase; Provisional
Probab=26.95 E-value=2.9e+02 Score=25.49 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCccc----HHHHHHHHHhCCCceEecccc
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSS----LDEAIKVCLAGGLQGIVSEVR 284 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~ 284 (371)
..+++.+++..|+....|+.+....+|....... ..+.+++..+.|++.+....+
T Consensus 18 Ltvl~~i~~~lp~~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 18 LTVLREIRRLLPDEHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 5689999999999999999887666665532111 234566677788888876654
No 326
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=26.87 E-value=4.8e+02 Score=23.67 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=50.9
Q ss_pred CeEEecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc-ccCChHHHHHHHHhC
Q 017440 222 PIMFSSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA-IFKNPGAIKKIKEAK 300 (371)
Q Consensus 222 ~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~~~~G 300 (371)
+.++++.+.+.++...+ .-++|+..+..... . .....+..+..+..|+++++...-. -......-+.+.+.|
T Consensus 39 s~~~H~~~~~~~~~qA~-algipl~~~~~~~~--~----e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lg 111 (223)
T TIGR00290 39 SYMFHGVNAHLTDLQAE-SIGIPLIKLYTEGT--E----EDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELG 111 (223)
T ss_pred cccccccCHHHHHHHHH-HcCCCeEEeecCCC--c----cHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcC
Confidence 45566666666554333 33566543221111 0 0123333444455677766543110 001234456667788
Q ss_pred CeEE--EecccCChHHHHHHHHhcCceEEE
Q 017440 301 LCLV--SYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 301 l~v~--~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
+..+ .| -.|..+-+..++ +.|++.+|
T Consensus 112 l~~~~PLW-~~~~~~ll~e~i-~~G~~aiI 139 (223)
T TIGR00290 112 LKSFAPLW-HRDPEKLMEEFV-EEKFEARI 139 (223)
T ss_pred CEEecccc-CCCHHHHHHHHH-HcCCeEEE
Confidence 8865 57 366666666765 78888887
No 327
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=26.83 E-value=2.8e+02 Score=26.90 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.2
Q ss_pred HhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 272 LAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 272 ~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
...+...+.+.... ...++++.+|..|..|..= +-+..++.++. +.|+|+|+..-+
T Consensus 101 ~~~~vpvv~~~~g~--~~~~~i~~~~~~g~~v~~~--v~~~~~A~~~~-~~G~d~vI~~g~ 156 (336)
T COG2070 101 EGAGVPVVSTSFGA--PPAEFVARLKAAGIKVIHS--VITVREALKAE-RAGADAVIAQGA 156 (336)
T ss_pred hcCCCCEEeccCCC--CcHHHHHHHHHcCCeEEEE--eCCHHHHHHHH-hCCCCEEEecCC
Confidence 33477666654431 3678999999999888774 44567777774 799999998655
No 328
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=83 Score=26.83 Aligned_cols=36 Identities=6% Similarity=0.237 Sum_probs=27.7
Q ss_pred hCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHH
Q 017440 299 AKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITE 337 (371)
Q Consensus 299 ~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~ 337 (371)
+|-+|..|| |++...-++++++||.++|-.-..+..
T Consensus 86 hGhqViP~g---d~~sL~~LaRqldvDILl~G~Th~f~A 121 (183)
T KOG3325|consen 86 HGHQVIPWG---DPESLALLARQLDVDILLTGHTHKFEA 121 (183)
T ss_pred cCcEeecCC---CHHHHHHHHHhcCCcEEEeCCceeEEE
Confidence 588999996 676666667789999999987665543
No 329
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=26.44 E-value=5.6e+02 Score=24.25 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecC-------CHH----HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSF-------QPD----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf-------~~~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
..+..+++.-++.+ .+++++.- ..+ .+..+.+. ..+|+++=.+-+. +++ .+..|-.
T Consensus 29 e~~~avi~AAee~~--sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~-~~VPValHLDHg~---------~~e-~i~~ai~ 95 (286)
T PRK12738 29 ETIQAILEVCSEMR--SPVILAGTPGTFKHIALEEIYALCSAYSTT-YNMPLALHLDHHE---------SLD-DIRRKVH 95 (286)
T ss_pred HHHHHHHHHHHHHC--CCEEEEcCcchhhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------CHH-HHHHHHH
Confidence 45667777666653 46777531 112 12222222 3688887665432 333 4556778
Q ss_pred CCCceEecccccc------cCChHHHHHHHHhCCeE
Q 017440 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 274 ~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v 303 (371)
.|+++|..+.+.+ ..|.+.++.+|..|+.|
T Consensus 96 ~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 96 AGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 8999888775432 35778999999999876
No 330
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=26.03 E-value=1.9e+02 Score=27.75 Aligned_cols=95 Identities=15% Similarity=0.269 Sum_probs=57.8
Q ss_pred ecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc---cc-------CChHHHHH
Q 017440 226 SSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA---IF-------KNPGAIKK 295 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-------~~~~~v~~ 295 (371)
.|.+|..++.++.+ .+.|...- +.. .-++ ...|...|+.||.+.-.. +. .-++.++.
T Consensus 208 ~Sl~W~Di~wLr~~-T~LPIvvK--Gil---------t~eD-A~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~a 274 (363)
T KOG0538|consen 208 PSLSWKDIKWLRSI-TKLPIVVK--GVL---------TGED-ARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKA 274 (363)
T ss_pred CCCChhhhHHHHhc-CcCCeEEE--eec---------ccHH-HHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHH
Confidence 47889999988876 35565431 100 1122 245667898887764211 11 11344444
Q ss_pred HHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 296 IKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 296 ~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
... .+.|+.=|-|..-.+..+.+ ++|+.+|+.-+|-..
T Consensus 275 V~~-ri~V~lDGGVR~G~DVlKAL-ALGAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 275 VEG-RIPVFLDGGVRRGTDVLKAL-ALGAKGVFIGRPIVW 312 (363)
T ss_pred hcC-ceEEEEecCcccchHHHHHH-hcccceEEecCchhe
Confidence 333 37777776677666766765 799999999999754
No 331
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=25.96 E-value=6.3e+02 Score=24.66 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=42.0
Q ss_pred cHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe--EEEe-cccCChHHHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC--LVSY-GELNNVPEVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~--v~~w-gtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
+....++.+.+.|+..=+ .++.-++.+.++|.. -.+| |...+.+++..++ +.|| -|..|.++++.++.
T Consensus 38 ~~~~il~~l~~~G~g~Dv-------aS~~El~~al~~G~~~~~Ii~~gp~K~~~~L~~ai-~~gv-~i~iDS~~El~~i~ 108 (379)
T cd06836 38 PLVPVLRLLAEAGAGAEV-------ASPGELELALAAGFPPERIVFDSPAKTRAELREAL-ELGV-AINIDNFQELERID 108 (379)
T ss_pred CCHHHHHHHHHcCCcEEE-------cCHHHHHHHHHcCCChhhEEEeCCCCCHHHHHHHH-HCCC-EEEECCHHHHHHHH
Confidence 344455666666542111 245567777777743 1233 3556667777775 6888 58888888887775
Q ss_pred H
Q 017440 340 S 340 (371)
Q Consensus 340 ~ 340 (371)
+
T Consensus 109 ~ 109 (379)
T cd06836 109 A 109 (379)
T ss_pred H
Confidence 4
No 332
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=25.82 E-value=2e+02 Score=29.02 Aligned_cols=57 Identities=7% Similarity=0.079 Sum_probs=39.2
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
.+.|...|++|||+..+.+ ....++.+...|+.+.+- .++.+++.+.. ..|+|.|.-
T Consensus 270 ~dlAl~~gAdGVHLGQeDL--~~~~aR~ilg~~~iIGvS--tHs~eEl~~A~-~~gaDYI~l 326 (437)
T PRK12290 270 WQLAIKHQAYGVHLGQEDL--EEANLAQLTDAGIRLGLS--THGYYELLRIV-QIQPSYIAL 326 (437)
T ss_pred HHHHHHcCCCEEEcChHHc--chhhhhhhcCCCCEEEEe--cCCHHHHHHHh-hcCCCEEEE
Confidence 3567788999999876543 334455555566766664 56778877774 689999854
No 333
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=25.72 E-value=1.3e+02 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=24.5
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
...++.++++|++|..+ .--+.+++... ++.|+|.|--
T Consensus 114 ~~~i~~L~~~gIrvSLF-iDP~~~qi~~A-~~~Gad~VEL 151 (239)
T PF03740_consen 114 KPVIKRLKDAGIRVSLF-IDPDPEQIEAA-KELGADRVEL 151 (239)
T ss_dssp HHHHHHHHHTT-EEEEE-E-S-HHHHHHH-HHTT-SEEEE
T ss_pred HHHHHHHHhCCCEEEEE-eCCCHHHHHHH-HHcCCCEEEE
Confidence 46788899999999888 33345555555 4789988854
No 334
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=25.68 E-value=5e+02 Score=24.43 Aligned_cols=61 Identities=8% Similarity=0.130 Sum_probs=36.3
Q ss_pred HHHHHHhCCCceEecccccc------cCChHHHHHHHHhCCeEEE----------------ecccCChHHHHHHHHhcCc
Q 017440 267 AIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----------------YGELNNVPEVVYMQRFMGI 324 (371)
Q Consensus 267 ~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----------------wgtvn~~~~~~~l~~~~GV 324 (371)
.+..+...|++.|..+...+ ..+.++++.+|+.|..|-. . +..+++++.++..+.|+
T Consensus 89 ~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~-~~t~~eea~~f~~~tgv 167 (282)
T TIGR01859 89 SCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA-ELADPDEAEQFVKETGV 167 (282)
T ss_pred HHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc-ccCCHHHHHHHHHHHCc
Confidence 34445556666665554331 2245667777777766541 2 34577888777644788
Q ss_pred eEEE
Q 017440 325 EGVI 328 (371)
Q Consensus 325 dgIi 328 (371)
|.+.
T Consensus 168 D~La 171 (282)
T TIGR01859 168 DYLA 171 (282)
T ss_pred CEEe
Confidence 8776
No 335
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=25.68 E-value=4.8e+02 Score=23.25 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=42.7
Q ss_pred cHHHHHHHHHhCCCceEecccccccCChHHHHHHHHh-CCeE-EEecccCChHHHHHHHH-hcCceEEEeCCh
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEA-KLCL-VSYGELNNVPEVVYMQR-FMGIEGVIVDLV 332 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~-Gl~v-~~wgtvn~~~~~~~l~~-~~GVdgIiTD~p 332 (371)
+..+..+.++..+++.+-++... +++.++.+++. ++++ .+. .+++..+...... .-.+|.+..|..
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~e---~~~~~~~l~~~~~~~iik~i-~v~~~~~l~~~~~~~~~~d~~L~Ds~ 133 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGDE---TPEFCRQLKRRYGLPVIKAL-RVRSAGDLEAAAAYYGDADGLLLDAY 133 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC---CHHHHHHHHhhcCCcEEEEE-ecCCHHHHHHHHhhhccCCEEEEcCC
Confidence 45667777888888888877543 67888888874 4554 345 4655444433321 136899999964
No 336
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=25.55 E-value=6.2e+02 Score=24.44 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc--cccCChHHHHHHHHhCCeEEEe
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR--AIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
+.+.++.+.+..++.++..+...+. ... +-++.+...|++.+..... ......+.++.+++.|+.|.+.
T Consensus 63 ~~e~i~~~~~~~~~~~~~~ll~pg~--------~~~-~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 63 DLEYIEAAADVVKRAKVAVLLLPGI--------GTV-HDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred hHHHHHHHHHhCCCCEEEEEeccCc--------cCH-HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 4456666666666555553332211 112 2356677778877654321 1112357899999999987654
Q ss_pred c---ccCChHHHHH---HHHhcCceEE-EeCC-----hHHHHHHHHhhh
Q 017440 307 G---ELNNVPEVVY---MQRFMGIEGV-IVDL-----VSEITEAVSDFI 343 (371)
Q Consensus 307 g---tvn~~~~~~~---l~~~~GVdgI-iTD~-----p~~l~~~l~~~~ 343 (371)
. +..+++.+.+ .+.+.|+|.| ++|- |..+.+.++...
T Consensus 134 l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 182 (333)
T TIGR03217 134 LMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALK 182 (333)
T ss_pred EEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1 1123343332 2245898886 4453 777766665544
No 337
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=25.49 E-value=2.5e+02 Score=25.76 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCCeEEec--------CCHHHHHHHHHHCCCCCeEEEcCCCC--cccCCCCcccHHHHHHHHHhCCCceEeccccc--c
Q 017440 219 QGRPIMFSS--------FQPDAALLIRKLQSTYPVFFLTNGGA--QTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--I 286 (371)
Q Consensus 219 ~~~~v~i~S--------f~~~~l~~l~~~~p~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 286 (371)
-.+|+-+++ .+..+++...+. .++|++.++.+.. ..|.+....-+.+-+..++..|+.||+...-. -
T Consensus 21 GAdRiELC~~La~GG~TPSyG~~k~a~~~-~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg 99 (241)
T COG3142 21 GADRIELCDALAEGGLTPSYGVIKEAVEL-SKIPVYVMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADG 99 (241)
T ss_pred CCceeehhhccccCCCCCCHHHHHHHHhh-cCCceEEEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCC
Confidence 345666655 567788888776 6789988876532 12222111224456778899999998865321 1
Q ss_pred cCChHHHHHHHH--hCCeEEEec---ccCChHHHHHHHHhcCceEEEeC
Q 017440 287 FKNPGAIKKIKE--AKLCLVSYG---ELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 287 ~~~~~~v~~~~~--~Gl~v~~wg---tvn~~~~~~~l~~~~GVdgIiTD 330 (371)
.++...++.+-+ .|+.|-.+- .+-|+.+....+.++||.-|.|-
T Consensus 100 ~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 100 NIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred ccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 234444444432 256654431 22344443333348999999884
No 338
>PF10210 MRP-S32: Mitochondrial 28S ribosomal protein S32; InterPro: IPR019346 This entry represents a family of short proteins; each approximately 100 amino acid residues in length. They are identified as the mitochondrial 28S ribosomal proteins S32.
Probab=25.42 E-value=53 Score=25.69 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.0
Q ss_pred EEEeeecCC-eEEEecCCC
Q 017440 95 FDVQVTRDG-CPVIFHDNF 112 (371)
Q Consensus 95 ~DV~lTkDG-~lVv~HD~~ 112 (371)
..|-+|.|| .+||+|-..
T Consensus 4 ~~iavT~dG~tIVcwHP~~ 22 (96)
T PF10210_consen 4 VEIAVTSDGRTIVCWHPEK 22 (96)
T ss_pred eeEEEecCCCEEEEeCCCC
Confidence 357899999 888888643
No 339
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=25.41 E-value=2.9e+02 Score=25.27 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=40.2
Q ss_pred hCCCceEecccccc---cCChHHHHHHHHh-CC-eEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 273 AGGLQGIVSEVRAI---FKNPGAIKKIKEA-KL-CLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 273 ~~~~~~v~~~~~~~---~~~~~~v~~~~~~-Gl-~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..|...+.+.+... ..++++++.+++. +. ++.+=|-+++.+++++++ ..|+|+|++-.
T Consensus 152 ~~g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGS 214 (232)
T PRK04169 152 YLGMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGN 214 (232)
T ss_pred HcCCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEECh
Confidence 34655555543321 2357899999885 45 666655699999998875 69999998755
No 340
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=25.36 E-value=1.5e+02 Score=24.21 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHhh
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSDF 342 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~~ 342 (371)
..+..+.++|+.+.++ |+-|.. +.|+=-.+.|+|+.+.++|.+.
T Consensus 19 ~~~~~L~eagINiRA~-tiAdt~-------dFGIiRmvV~~~d~A~~~Lee~ 62 (142)
T COG4747 19 SVANKLKEAGINIRAF-TIADTG-------DFGIIRMVVDRPDEAHSVLEEA 62 (142)
T ss_pred HHHHHHHHcCCceEEE-Eecccc-------CcceEEEEcCChHHHHHHHHHC
Confidence 4667788999999999 776653 3577778888888888888765
No 341
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=25.25 E-value=3.7e+02 Score=27.43 Aligned_cols=113 Identities=17% Similarity=0.086 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHCCCCCeEEEcCCCCc-ccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEE-
Q 017440 229 QPDAALLIRKLQSTYPVFFLTNGGAQ-TCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLV- 304 (371)
Q Consensus 229 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~- 304 (371)
.++.++.+++..|+.++..+...... .+......-+...++.+.+.|++.+...... .-.-...++.++++|+.|.
T Consensus 61 p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~ 140 (467)
T PRK14041 61 PWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQG 140 (467)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEE
Confidence 47888888888888777655443211 1111111113445677788888876543211 1112357889999998875
Q ss_pred --EecccC---ChHHH---HHHHHhcCceEEEe-C-----ChHHHHHHHHhh
Q 017440 305 --SYGELN---NVPEV---VYMQRFMGIEGVIV-D-----LVSEITEAVSDF 342 (371)
Q Consensus 305 --~wgtvn---~~~~~---~~l~~~~GVdgIiT-D-----~p~~l~~~l~~~ 342 (371)
+| |.. +.+.+ .+.+.++|+|.|.- | .|..+.++++..
T Consensus 141 ~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 141 AISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred EEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHH
Confidence 34 333 22222 22234689998753 3 366666665554
No 342
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=25.09 E-value=4.4e+02 Score=24.26 Aligned_cols=39 Identities=8% Similarity=-0.182 Sum_probs=28.1
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
...+..++++|+.+..+ . .+++...+++ +.|++.|..-.
T Consensus 193 ~~v~~aa~a~G~~~g~~-~-~~~~~~~~~~-~~G~~~~~~~~ 231 (249)
T TIGR03239 193 RHIFDRAAAHGKPCGIL-A-PVEADARRYL-EWGATFVAVGS 231 (249)
T ss_pred HHHHHHHHHcCCCEEEc-C-CCHHHHHHHH-HcCCCEEEEhH
Confidence 45778889999988877 3 4566677775 78988765543
No 343
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=25.06 E-value=4.1e+02 Score=24.45 Aligned_cols=72 Identities=10% Similarity=0.179 Sum_probs=38.7
Q ss_pred HHHHHhCCCceEecccccccCCh----HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe---CChHHHHHHHH
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNP----GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV---DLVSEITEAVS 340 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~----~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT---D~p~~l~~~l~ 340 (371)
.+.+...|++.+.++.++...+. ..+..++..|..+++=-..+++..+.+.+ +.|++||+- +.++.++++++
T Consensus 26 ~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~L-d~Ga~gIivP~v~s~e~a~~~v~ 104 (249)
T TIGR02311 26 AEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLL-DIGAQTLLVPMIETAEQAEAAVA 104 (249)
T ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHh-CCCCCEEEecCcCCHHHHHHHHH
Confidence 44555667777776655432222 24444445566554431123555566665 788888864 44455555443
No 344
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=25.06 E-value=82 Score=23.14 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.6
Q ss_pred EEEEEEeeecCCeEEEec
Q 017440 92 FIEFDVQVTRDGCPVIFH 109 (371)
Q Consensus 92 ~IE~DV~lTkDG~lVv~H 109 (371)
-||+||.. +||..+++-
T Consensus 2 ~VElDvvi-kdg~~ilvE 18 (70)
T PF07788_consen 2 EVELDVVI-KDGKVILVE 18 (70)
T ss_pred eeEEEEEE-ECCeEEEEE
Confidence 47888855 888877764
No 345
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=24.93 E-value=49 Score=26.56 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=31.2
Q ss_pred cccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 74 IKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 74 ~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
-.|.+-+|++.|+...+-.-|+.|.++.||+..+..+..
T Consensus 12 g~~~~~e~l~~al~~aa~~~eV~vff~~DGV~~l~~~q~ 50 (116)
T TIGR03010 12 GTASGREGLDALLAASAFDEDIGVFFIDDGVLQLLKNQQ 50 (116)
T ss_pred CcchHHHHHHHHHHHHhccCCeEEEEechHHHHHhccCC
Confidence 467888999999886665579999999999988776533
No 346
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=24.79 E-value=6.7e+02 Score=24.56 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc-cC---------------ChHHHH
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI-FK---------------NPGAIK 294 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---------------~~~~v~ 294 (371)
+.++.+|+.+|++++.. ..- .+.+. .+.....|+++|-+-...- .. --+..+
T Consensus 138 ~~ik~ik~~~~~~~via--GNV---------~T~e~-a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~ 205 (352)
T PF00478_consen 138 DMIKKIKKKFPDVPVIA--GNV---------VTYEG-AKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAE 205 (352)
T ss_dssp HHHHHHHHHSTTSEEEE--EEE----------SHHH-HHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceEEe--ccc---------CCHHH-HHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHH
Confidence 46777788888666542 110 12233 3334456787765442110 00 114556
Q ss_pred HHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCCh
Q 017440 295 KIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 295 ~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p 332 (371)
.+++.+.+|.+=|-+....++.+.+ ..|+|.|+.-.+
T Consensus 206 ~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VMlG~l 242 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRTSGDIVKAL-AAGADAVMLGSL 242 (352)
T ss_dssp HHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEEESTT
T ss_pred HhhhccCceeecCCcCcccceeeee-eecccceeechh
Confidence 6777899999998899999998887 799999997653
No 347
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=24.72 E-value=6.3e+02 Score=24.29 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHH----HHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHH---HhCCCc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALL----IRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVC---LAGGLQ 277 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~----l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 277 (371)
.-+.++-+.|.+.|....+-|.|+....... +|......|. +........|+ ..-.+++..+ ..-|++
T Consensus 166 GrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~---~gDRksYQmdp--~n~~eAlre~~~D~~EGAD 240 (320)
T cd04824 166 GRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPS---FGDRRCYQLPP--GARGLALRAVERDVSEGAD 240 (320)
T ss_pred cHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCC---CCCccccCCCC--cCHHHHHHHHHhhHHhCCC
Confidence 3466666777788875567787876443322 2332222221 11111111222 1223333332 234677
Q ss_pred eEecccccccCChHHHHHHHHh--CCeEEEecccCChHHHHH-------------------HHHhcCceEEEeCChHHHH
Q 017440 278 GIVSEVRAIFKNPGAIKKIKEA--KLCLVSYGELNNVPEVVY-------------------MQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 278 ~v~~~~~~~~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~-------------------l~~~~GVdgIiTD~p~~l~ 336 (371)
.+.+-... .--+.|+.++++ ++++.+| -|..+-.|.+ .+++.|+|.|+|=+...+.
T Consensus 241 ~lMVKPal--~YLDIi~~~k~~~~~~PvaaY-qVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~a 317 (320)
T cd04824 241 MIMVKPGT--PYLDIVREAKDKHPDLPLAVY-HVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELL 317 (320)
T ss_pred EEEEcCCc--hHHHHHHHHHHhccCCCEEEE-EccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHHH
Confidence 66543221 123688888886 6889998 5543322211 1346899999999988776
Q ss_pred HH
Q 017440 337 EA 338 (371)
Q Consensus 337 ~~ 338 (371)
++
T Consensus 318 ~w 319 (320)
T cd04824 318 DW 319 (320)
T ss_pred hh
Confidence 54
No 348
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.53 E-value=4.3e+02 Score=24.61 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCcc-cCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEE
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQT-CTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLV 304 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~ 304 (371)
-+++.++.+++..|+.++..+......+ +......-....++.+...|++.|.+.... +-.-.+.++.++++|+.+.
T Consensus 56 ~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~ 135 (275)
T cd07937 56 DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVE 135 (275)
T ss_pred CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEE
Confidence 3467777777777776666554321100 000000113445666777777776553221 1112457899999998865
Q ss_pred E-----ecccCChHHHHHH---HHhcCceEEE-eCC-----hHHHHHHHHhhh
Q 017440 305 S-----YGELNNVPEVVYM---QRFMGIEGVI-VDL-----VSEITEAVSDFI 343 (371)
Q Consensus 305 ~-----wgtvn~~~~~~~l---~~~~GVdgIi-TD~-----p~~l~~~l~~~~ 343 (371)
. +++..+++...++ ..+.|+|.|. .|- |..+.++++...
T Consensus 136 ~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 136 GAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALK 188 (275)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3 2112233333322 2468998874 332 666666665543
No 349
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=24.47 E-value=4.7e+02 Score=22.69 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=10.4
Q ss_pred hcCceEEEeCC--hHHHHHHHHh
Q 017440 321 FMGIEGVIVDL--VSEITEAVSD 341 (371)
Q Consensus 321 ~~GVdgIiTD~--p~~l~~~l~~ 341 (371)
..|++|++.-. +..+.+.++.
T Consensus 100 ~~Ga~~yl~K~~~~~~l~~ai~~ 122 (216)
T PRK10840 100 DLDIEGIVLKQGAPTDLPKALAA 122 (216)
T ss_pred HCCCeEEEECCCCHHHHHHHHHH
Confidence 46666665532 4444444443
No 350
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=24.32 E-value=1.8e+02 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCce----EEEeCC
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIE----GVIVDL 331 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVd----gIiTD~ 331 (371)
.+.++.++++|..+.+| |-+..+.+...+...|++ .|++..
T Consensus 152 ~EaL~~LkekGikLaIa-TS~~Re~v~~~L~~lGLd~YFdvIIs~G 196 (301)
T TIGR01684 152 YDSLTELKKRGCILVLW-SYGDRDHVVESMRKVKLDRYFDIIISGG 196 (301)
T ss_pred HHHHHHHHHCCCEEEEE-ECCCHHHHHHHHHHcCCCcccCEEEECC
Confidence 36889999999999999 777766666666678877 455543
No 351
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=24.28 E-value=1.9e+02 Score=25.32 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCCeEEecCCHHHHHHHHHHCCC-CCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEe-cccc
Q 017440 207 LEAILKVVFEHAQGRPIMFSSFQPDAALLIRKLQST-YPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIV-SEVR 284 (371)
Q Consensus 207 ~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 284 (371)
+..+++.+++.....+++++++.+.-...+++..++ +...++- .| .....-.+.+.+..+.+. +..+
T Consensus 37 ~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P-------~D----~~~~~~rfl~~~~P~~~i~~EtE 105 (186)
T PF04413_consen 37 ARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLP-------LD----FPWAVRRFLDHWRPDLLIWVETE 105 (186)
T ss_dssp HHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE----------S----SHHHHHHHHHHH--SEEEEES--
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeC-------cc----CHHHHHHHHHHhCCCEEEEEccc
Confidence 445555555554566899999887777777666543 4444321 11 122233455555555433 2222
Q ss_pred cccCChHHHHHHHHhCCeEEE-ecccCChH--HHHH---HHH--hcCceEEEeCChHHHHHHHH
Q 017440 285 AIFKNPGAIKKIKEAKLCLVS-YGELNNVP--EVVY---MQR--FMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 285 ~~~~~~~~v~~~~~~Gl~v~~-wgtvn~~~--~~~~---l~~--~~GVdgIiTD~p~~l~~~l~ 340 (371)
+=|.++..++++|++++. -+.+.+.. .+.+ +.+ -..+|.|++=....+.++.+
T Consensus 106 ---lWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~da~r~~~ 166 (186)
T PF04413_consen 106 ---LWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEADAERFRK 166 (186)
T ss_dssp -----HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHHHHHHHHT
T ss_pred ---cCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHHHHHHHHH
Confidence 258899999999988753 22122111 1111 110 15688888888877776653
No 352
>PLN02535 glycolate oxidase
Probab=24.13 E-value=6.9e+02 Score=24.54 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=63.7
Q ss_pred ecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccc------cccCChHHHHHHHHh
Q 017440 226 SSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVR------AIFKNPGAIKKIKEA 299 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~v~~~~~~ 299 (371)
.+++|+.++.+++. .+.|+..- +. .+..+ ...+...|+++|.+... ....+-..+.++.++
T Consensus 208 ~~~tW~~i~~lr~~-~~~PvivK--gV---------~~~~d-A~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 208 ASLSWKDIEWLRSI-TNLPILIK--GV---------LTRED-AIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQA 274 (364)
T ss_pred CCCCHHHHHHHHhc-cCCCEEEe--cC---------CCHHH-HHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHH
Confidence 46789999999985 45666542 11 12233 45677889998865411 111123445555432
Q ss_pred ---CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 300 ---KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 300 ---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
.++|++-|-+.+..++.+.+ .+|++++..-+|-...
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KAL-alGA~aV~vGr~~l~~ 313 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKAL-ALGAQAVLVGRPVIYG 313 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHH-HcCCCEEEECHHHHhh
Confidence 47888887788888888886 7999999999987643
No 353
>COG2923 DsrF Uncharacterized protein involved in the oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=24.10 E-value=80 Score=25.62 Aligned_cols=49 Identities=16% Similarity=0.052 Sum_probs=39.9
Q ss_pred CCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecC
Q 017440 49 PKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHD 110 (371)
Q Consensus 49 ~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD 110 (371)
++..++.++.=.+ -+++-+|+..++...+-.-|.+|.+-.||++-+.-+
T Consensus 2 k~~afvf~~aP~G-------------s~~~rEgLda~la~~a~~~~~~vffi~DGV~~L~~~ 50 (118)
T COG2923 2 KKLAFVFRTAPHG-------------SEAGREGLDAALATSAFSLETGVFFIGDGVFQLLPG 50 (118)
T ss_pred ceEEEEEecCCCc-------------cHHHHhHHHHHHHHhhcccccceEEEccchhhhcCC
Confidence 3456677776665 578999999999999999999999999998876654
No 354
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.00 E-value=4.9e+02 Score=22.71 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCC---cccCCCCcccHHH-HHHHHHhCCC-----ceEecccccccCChHHHHHHHH
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGA---QTCTDVRRSSLDE-AIKVCLAGGL-----QGIVSEVRAIFKNPGAIKKIKE 298 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~~~v~~~~~ 298 (371)
|-.+.+-+++...|.+|...|.-... ..-.|. .++. .-++..+.|- -++.+..+.. .--..++.+++
T Consensus 59 faael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy---~yd~vFsRqveA~g~~GDvLigISTSGNS~-nVl~Ai~~Ak~ 134 (176)
T COG0279 59 FAAELTGRFEKERPSLPAIALSTDSSVLTAIANDY---GYDEVFSRQVEALGQPGDVLIGISTSGNSK-NVLKAIEAAKE 134 (176)
T ss_pred HHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccc---cHHHHHHHHHHhcCCCCCEEEEEeCCCCCH-HHHHHHHHHHH
Confidence 45677778888889999988873211 111221 2222 1233344442 2344333210 01246788899
Q ss_pred hCCeEEEecccCChHHHHHHHHh--cCceEEEeCChHH
Q 017440 299 AKLCLVSYGELNNVPEVVYMQRF--MGIEGVIVDLVSE 334 (371)
Q Consensus 299 ~Gl~v~~wgtvn~~~~~~~l~~~--~GVdgIiTD~p~~ 334 (371)
+|+.+.+. |-++-..+..++ + .-|..-.|++.++
T Consensus 135 ~gm~vI~l-tG~~GG~~~~~~-D~~i~VPs~~t~RIQE 170 (176)
T COG0279 135 KGMTVIAL-TGKDGGKLAGLL-DVEIRVPSTDTARIQE 170 (176)
T ss_pred cCCEEEEE-ecCCCccccccc-ceEEecCCCcchhhhh
Confidence 99999999 888888776664 2 3455555555443
No 355
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.91 E-value=1.4e+02 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=15.0
Q ss_pred HHHHHhCCCceEecccccccCChHHHHHHHHhC
Q 017440 268 IKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAK 300 (371)
Q Consensus 268 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~G 300 (371)
+++++..|...+... .+++-.+.+++.|
T Consensus 7 ~q~ak~~G~~vi~~~-----~~~~k~~~~~~~G 34 (130)
T PF00107_consen 7 IQLAKAMGAKVIATD-----RSEEKLELAKELG 34 (130)
T ss_dssp HHHHHHTTSEEEEEE-----SSHHHHHHHHHTT
T ss_pred HHHHHHcCCEEEEEE-----CCHHHHHHHHhhc
Confidence 455666664444332 1455566666666
No 356
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=23.86 E-value=2.5e+02 Score=27.13 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=39.1
Q ss_pred hHHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEe-----------CChHHHHHHHHh
Q 017440 290 PGAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIV-----------DLVSEITEAVSD 341 (371)
Q Consensus 290 ~~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT-----------D~p~~l~~~l~~ 341 (371)
.+.++.++.. |+.|++| +.+|+...+++. ++|+-.|+- -+|+.++..++.
T Consensus 184 ~~~v~aa~~L~~~Gf~v~~y-c~~d~~~a~~l~-~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~ 247 (326)
T PRK11840 184 VETLKATEILVKEGFQVMVY-CSDDPIAAKRLE-DAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEG 247 (326)
T ss_pred HHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHH-hcCCEEEeeccccccCCCCCCCHHHHHHHHHc
Confidence 3677778887 9999999 899999988885 789876665 367777776665
No 357
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=23.86 E-value=6.3e+02 Score=24.37 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.7
Q ss_pred cCceEEEeCChHHHH
Q 017440 322 MGIEGVIVDLVSEIT 336 (371)
Q Consensus 322 ~GVdgIiTD~p~~l~ 336 (371)
.|+|.++-.+|..+.
T Consensus 289 ~ga~i~vm~hp~s~~ 303 (319)
T PRK04452 289 AGADIFMMRHPESVK 303 (319)
T ss_pred hcCcEEEEeCHHHHH
Confidence 466666666665544
No 358
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=23.84 E-value=6.5e+02 Score=24.08 Aligned_cols=99 Identities=10% Similarity=0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHHHHH---HHhCCCceEeccccc-------c---cCChHHHHH
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAIKV---CLAGGLQGIVSEVRA-------I---FKNPGAIKK 295 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~-------~---~~~~~~v~~ 295 (371)
.++++.+|+.. +++++++-+.... +.+. ..+..+++++ +...|++.+.+.... . .......+.
T Consensus 208 ~eiv~aIR~~vG~d~~v~vri~~~~--~~~~-g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ 284 (336)
T cd02932 208 LEVVDAVRAVWPEDKPLFVRISATD--WVEG-GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAER 284 (336)
T ss_pred HHHHHHHHHHcCCCceEEEEEcccc--cCCC-CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHH
Confidence 47788888766 4677776443211 0000 0124444444 445677777643110 0 012245556
Q ss_pred HHHh-CCeEEEecccCChHHHHHHHHhcC-ceEEEeCCh
Q 017440 296 IKEA-KLCLVSYGELNNVPEVVYMQRFMG-IEGVIVDLV 332 (371)
Q Consensus 296 ~~~~-Gl~v~~wgtvn~~~~~~~l~~~~G-VdgIiTD~p 332 (371)
+++. +++|.+=|.+.+++++.+++ +.| +|.|..=++
T Consensus 285 ir~~~~iPVi~~G~i~t~~~a~~~l-~~g~aD~V~~gR~ 322 (336)
T cd02932 285 IRQEAGIPVIAVGLITDPEQAEAIL-ESGRADLVALGRE 322 (336)
T ss_pred HHhhCCCCEEEeCCCCCHHHHHHHH-HcCCCCeehhhHH
Confidence 6654 67787766788999999987 455 888765443
No 359
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=23.82 E-value=2.3e+02 Score=26.44 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=21.9
Q ss_pred HHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 292 AIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 292 ~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
..+.+-+.|+.|++| +-+|+-..+++. +.|+..|+
T Consensus 129 Aae~Lv~eGF~VlPY-~~~D~v~a~rLe-d~Gc~aVM 163 (267)
T CHL00162 129 AAEFLVKKGFTVLPY-INADPMLAKHLE-DIGCATVM 163 (267)
T ss_pred HHHHHHHCCCEEeec-CCCCHHHHHHHH-HcCCeEEe
Confidence 334445667777777 666666666663 67766665
No 360
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=23.71 E-value=2.8e+02 Score=25.04 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEe
Q 017440 262 SSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 262 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~w 306 (371)
.++.+.++.+++.|+++|-+......--.++.+.+.++|+.+...
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 368888999999999988765422111245667788999987654
No 361
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.60 E-value=6.3e+02 Score=23.86 Aligned_cols=110 Identities=8% Similarity=0.156 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHH-----------HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPD-----------AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~-----------~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
..+..+++.-++. ..+++++..... .+..+.+. ..+|+++=.+-.. ++ +.+..|..
T Consensus 29 e~~~avi~AAee~--~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~-~~VPV~lHLDHg~---------~~-e~i~~Ai~ 95 (284)
T PRK09195 29 ETMQVVVETAAEL--HSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQ-YHHPLALHLDHHE---------KF-DDIAQKVR 95 (284)
T ss_pred HHHHHHHHHHHHh--CCCEEEEcChhHHhhCCHHHHHHHHHHHHHH-CCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 4566666665554 356777653311 12222232 3678877655432 23 34566777
Q ss_pred CCCceEecccccc------cCChHHHHHHHHhCCeEEE----e-cc------------cCChHHHHHHHHhcCceEE
Q 017440 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----Y-GE------------LNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 274 ~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-gt------------vn~~~~~~~l~~~~GVdgI 327 (371)
.|+++|..+.+.+ ..|.+.++.+|..|..|=+ = |. .-++++..++..+.|||.+
T Consensus 96 ~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 172 (284)
T PRK09195 96 SGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSL 172 (284)
T ss_pred cCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEE
Confidence 8999888775542 3577899999999976632 1 00 1256677777666676655
No 362
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=23.50 E-value=4.4e+02 Score=26.22 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCe-------EEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLC-------LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~-------v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
....++.....|+ ++-+ .+..-++.+.++|.. +..-+.+.+.+++.+++ ++|+ .|..|.++++.
T Consensus 58 ~~~il~~~~~~G~-g~dv------aS~~E~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~-~~gv-~i~vDs~~el~ 128 (420)
T PRK11165 58 NIHILRLMREQGV-KVDA------VSLGEIERALAAGYKPGTEPDEIVFTADVIDRATLARVV-ELKI-PVNAGSIDMLD 128 (420)
T ss_pred CHHHHHHHHHcCC-CEEE------eCHHHHHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHH-HCCC-EEEECCHHHHH
Confidence 3455666667776 3321 256667888888863 33322566777888875 6898 67889988887
Q ss_pred HHHH
Q 017440 337 EAVS 340 (371)
Q Consensus 337 ~~l~ 340 (371)
.+.+
T Consensus 129 ~i~~ 132 (420)
T PRK11165 129 QLGQ 132 (420)
T ss_pred HHHH
Confidence 6654
No 363
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=23.19 E-value=1.9e+02 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=25.3
Q ss_pred CceEecccccccCChHHHHHHHHhCCeEEEecccCC
Q 017440 276 LQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNN 311 (371)
Q Consensus 276 ~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~ 311 (371)
...+.+++.. .++..++.+++.|+.+..| +++.
T Consensus 98 ~~~fr~P~G~--~~~~~~~~l~~~G~~~v~w-~~~~ 130 (191)
T TIGR02764 98 PTLFRPPSGA--FNKAVLKAAESLGYTVVHW-SVDS 130 (191)
T ss_pred CCEEECCCcC--CCHHHHHHHHHcCCeEEEe-cCCC
Confidence 3455555543 4889999999999999999 7864
No 364
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=23.14 E-value=4.4e+02 Score=23.97 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCceEeccccc-----ccCChHHHHHHHHh-CCeEEEecccCChHHHHHHHH--hcCceEEEeCCh
Q 017440 264 LDEAIKVCLAGGLQGIVSEVRA-----IFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQR--FMGIEGVIVDLV 332 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~--~~GVdgIiTD~p 332 (371)
+.+.++.+...|+..+..+... .-.+-++++.+.+. +++|.+-|-+.+.+++.++.. ..||||++.-+.
T Consensus 148 ~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 148 LWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 4555666677887766554221 01134566666664 789999888999999888742 259999987653
No 365
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=23.09 E-value=7.1e+02 Score=24.30 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=36.5
Q ss_pred ChHHHHHHHHhCCe---EEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHHh
Q 017440 289 NPGAIKKIKEAKLC---LVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVSD 341 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~---v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~~ 341 (371)
+..-++.+.+.|.. +...+.....+++.+++ +.|+ -+..|..+++..+.+-
T Consensus 79 S~~E~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~-~~gv-~i~vDs~~el~~l~~~ 132 (398)
T TIGR03099 79 SAGELAVALDTGYDPGCISFAGPGKTDAELRRAL-AAGV-LINVESLRELNRLAAL 132 (398)
T ss_pred CHHHHHHHHHcCCChhHEEEeCCCCCHHHHHHHH-hCCC-EEEECCHHHHHHHHHH
Confidence 56667777888864 55554455777777775 6899 7889999888877543
No 366
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=22.79 E-value=3.2e+02 Score=23.93 Aligned_cols=39 Identities=10% Similarity=0.046 Sum_probs=26.4
Q ss_pred ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
..++++.++++|.++++- |-+.......++..+|++.++
T Consensus 90 ~~~~l~~l~~~g~~~~Iv-S~~~~~~~~~~l~~~~i~~~~ 128 (219)
T TIGR00338 90 AEELVKTLKEKGYKVAVI-SGGFDLFAEHVKDKLGLDAAF 128 (219)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCcHHHHHHHHHHcCCCceE
Confidence 357889999999988877 655544445555457765554
No 367
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.60 E-value=5.3e+02 Score=24.39 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=48.3
Q ss_pred CCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc------cCChHHHHHHHHhCCeEEEe-----c---
Q 017440 242 TYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVSY-----G--- 307 (371)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~w-----g--- 307 (371)
.+|+++=.+-.. ++ +.+..|...|+++|..+.+.+ ..|.+.++.+|..|+.|=+= |
T Consensus 77 ~VPV~lHLDHg~---------~~-e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~ 146 (288)
T TIGR00167 77 GVPVALHLDHGA---------SE-EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEED 146 (288)
T ss_pred CCcEEEECCCCC---------CH-HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccC
Confidence 678876555431 23 345566678888887765432 34678999999999876321 0
Q ss_pred -----c----cCChHHHHHHHHhcCceEEE
Q 017440 308 -----E----LNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 308 -----t----vn~~~~~~~l~~~~GVdgIi 328 (371)
. .-++++..++..+-|||.+-
T Consensus 147 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 176 (288)
T TIGR00167 147 GVSVADESALYTDPEEAKEFVKLTGVDSLA 176 (288)
T ss_pred CcccccccccCCCHHHHHHHHhccCCcEEe
Confidence 0 11557777776566777663
No 368
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=22.58 E-value=5.5e+02 Score=22.76 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=30.1
Q ss_pred hHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeC
Q 017440 290 PGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 290 ~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD 330 (371)
-+.++.+++. +++|.+=|-+.+.+++.+++ ..|+||++.=
T Consensus 166 ~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l-~~GadgV~vG 206 (219)
T cd04729 166 FELLKELRKALGIPVIAEGRINSPEQAAKAL-ELGADAVVVG 206 (219)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEc
Confidence 3566666654 67877766788999998886 6999999764
No 369
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.39 E-value=6.6e+02 Score=23.68 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHH
Q 017440 228 FQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKE 298 (371)
Q Consensus 228 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~ 298 (371)
++.+.++.+++.. ++|+...-.- .+...+.+....-+++.|.+. +.++.+|++++.+++
T Consensus 268 ~~~~~~~~ir~~~-~iPVi~~Ggi----------~t~~~a~~~l~~g~aD~V~ig-R~~ladP~l~~k~~~ 326 (327)
T cd02803 268 YFLELAEKIKKAV-KIPVIAVGGI----------RDPEVAEEILAEGKADLVALG-RALLADPDLPNKARE 326 (327)
T ss_pred hhHHHHHHHHHHC-CCCEEEeCCC----------CCHHHHHHHHHCCCCCeeeec-HHHHhCccHHHHHhc
Confidence 3445666666654 4565432211 134444444444467766653 334567777776653
No 370
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.34 E-value=4e+02 Score=25.97 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhCC-CceEecccccccCChHHHHHHHHhCCe-EEEecccCChH-HHHHHHHhcCceEEEeCChHHHHHHH
Q 017440 263 SLDEAIKVCLAGG-LQGIVSEVRAIFKNPGAIKKIKEAKLC-LVSYGELNNVP-EVVYMQRFMGIEGVIVDLVSEITEAV 339 (371)
Q Consensus 263 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~v~~~~~~Gl~-v~~wgtvn~~~-~~~~l~~~~GVdgIiTD~p~~l~~~l 339 (371)
.+.+.++.++... ...+++..+..+++.++++++.++|+. +.. .+|..+ .+.+++ .|++..-.+..-.+.+++
T Consensus 176 ~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNl--Sv~aLDpk~Ak~L--~G~~dYdv~kvle~aE~i 251 (414)
T COG2100 176 HLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINL--SVDALDPKLAKML--AGRKDYDVKKVLEVAEYI 251 (414)
T ss_pred hHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceEEe--ecccCCHHHHHHh--cCccccCHHHHHHHHHHH
Confidence 4566666666553 455555555556789999999999975 333 244322 233332 566655555555555555
Q ss_pred Hh
Q 017440 340 SD 341 (371)
Q Consensus 340 ~~ 341 (371)
.+
T Consensus 252 ~~ 253 (414)
T COG2100 252 AN 253 (414)
T ss_pred Hh
Confidence 54
No 371
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=22.06 E-value=6e+02 Score=24.30 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEe------CChHHHHHHHH
Q 017440 291 GAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIV------DLVSEITEAVS 340 (371)
Q Consensus 291 ~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT------D~p~~l~~~l~ 340 (371)
+.+..++++ ++.|..-|-+.+.+++.+++ ..|+|+|.. +.|..+.+.++
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l-~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKI-RAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHH-HcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 566667665 46777666799999999987 489998754 33555545443
No 372
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=22.00 E-value=6.8e+02 Score=23.63 Aligned_cols=110 Identities=10% Similarity=0.173 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCH-------H----HHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHh
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQP-------D----AALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLA 273 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~-------~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (371)
.++..+++.-++. ..+++++.... + .+..+.+ ...+|+++=.+-+. ++ +.+..|..
T Consensus 27 e~~~avi~AAee~--~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~-~~~VPValHLDHg~---------~~-e~i~~ai~ 93 (282)
T TIGR01858 27 ETIQAVVETAAEM--RSPVILAGTPGTFKHAGTEYIVALCSAAST-TYNMPLALHLDHHE---------SL-DDIRQKVH 93 (282)
T ss_pred HHHHHHHHHHHHh--CCCEEEEeCccHHhhCCHHHHHHHHHHHHH-HCCCCEEEECCCCC---------CH-HHHHHHHH
Confidence 3456666655554 34566664321 1 1222222 23578887655432 22 34566778
Q ss_pred CCCceEecccccc------cCChHHHHHHHHhCCeEEE----e-cc------------cCChHHHHHHHHhcCceEE
Q 017440 274 GGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----Y-GE------------LNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 274 ~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-gt------------vn~~~~~~~l~~~~GVdgI 327 (371)
.|+++|..+.+.+ ..+.+.++.+|..|+.|=+ = |. .-++++..++..+.|||.+
T Consensus 94 ~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~L 170 (282)
T TIGR01858 94 AGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSL 170 (282)
T ss_pred cCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEE
Confidence 8998888775442 3467899999999987632 1 00 1245666666656676654
No 373
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.00 E-value=7.5e+02 Score=24.14 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=62.6
Q ss_pred ecCCHHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccc--cc----ccCChHHHHHHHHh
Q 017440 226 SSFQPDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEV--RA----IFKNPGAIKKIKEA 299 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~----~~~~~~~v~~~~~~ 299 (371)
.+++|+.+..+++.. +.|+..- +. .+. +..+.+...|+++|.+.- .. ...+-+.+.++.++
T Consensus 206 ~~~~~~~l~~lr~~~-~~PvivK--gv---------~~~-~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a 272 (351)
T cd04737 206 QKLSPADIEFIAKIS-GLPVIVK--GI---------QSP-EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEA 272 (351)
T ss_pred CCCCHHHHHHHHHHh-CCcEEEe--cC---------CCH-HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHH
Confidence 357899999998864 4666543 11 122 234567788999887631 10 00111334444332
Q ss_pred ---CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHHH
Q 017440 300 ---KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEIT 336 (371)
Q Consensus 300 ---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~ 336 (371)
.+.|++-|-+.+..++.+.+ .+|+|+|..-+|-...
T Consensus 273 ~~~~i~vi~dGGIr~g~Di~kaL-alGA~~V~iGr~~l~~ 311 (351)
T cd04737 273 VNHRVPIIFDSGVRRGEHVFKAL-ASGADAVAVGRPVLYG 311 (351)
T ss_pred hCCCCeEEEECCCCCHHHHHHHH-HcCCCEEEECHHHHHH
Confidence 38888888899999988887 6999999999976653
No 374
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.96 E-value=1.7e+02 Score=28.37 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCCEEEEEEeeecCCeEEEecCCCcccccCCccccccccccCHHHHhcc
Q 017440 80 LSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSY 137 (371)
Q Consensus 80 ~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l 137 (371)
..-.+|+.+|||++=+-+|.|.|.-+ +|+ -..++.+|++++
T Consensus 281 ~~a~AAvA~GAdGliIE~H~~pd~al-----------sD~------~~sl~p~e~~~l 321 (335)
T PRK08673 281 PLALAAVAAGADGLIVEVHPDPEKAL-----------SDG------PQSLTPEEFEEL 321 (335)
T ss_pred HHHHHHHHhCCCEEEEEecCCcccCC-----------Ccc------hhcCCHHHHHHH
Confidence 45578889999987777888877754 234 256677777665
No 375
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=21.92 E-value=1.7e+02 Score=26.92 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=23.2
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEE
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGV 327 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgI 327 (371)
...++.+|++|++|-.+ .--+++++... ++.|+|.|
T Consensus 113 ~~~i~~l~~~gI~VSLF-iDP~~~qi~~A-~~~GAd~V 148 (237)
T TIGR00559 113 CELVKRFHAAGIEVSLF-IDADKDQISAA-AEVGADRI 148 (237)
T ss_pred HHHHHHHHHCCCEEEEE-eCCCHHHHHHH-HHhCcCEE
Confidence 45677788888888777 33344445444 46787766
No 376
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=21.90 E-value=71 Score=23.35 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.5
Q ss_pred EeeecCCeEEEecCCCcccccCC
Q 017440 97 VQVTRDGCPVIFHDNFIFTKDEG 119 (371)
Q Consensus 97 V~lTkDG~lVv~HD~~L~r~t~g 119 (371)
+.-|+||+-|.+|-..+.|+.+.
T Consensus 43 ~meTkDG~kI~m~gdEV~RL~~~ 65 (73)
T PF11525_consen 43 VMETKDGQKITMHGDEVARLDSL 65 (73)
T ss_dssp EEEBTTS-EEEEETTEEEEECCC
T ss_pred EEEccCCCEEEecchHHHhHHHH
Confidence 56789999999998888887553
No 377
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.53 E-value=7.2e+02 Score=23.79 Aligned_cols=71 Identities=14% Similarity=0.240 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCceEecccccc----c-------C---ChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 266 EAIKVCLAGGLQGIVSEVRAI----F-------K---NPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~----~-------~---~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.++.+...|++.+.++.... + . .-+.+..+++. .++|..-|.|.+.+++.+++ . |+|||+.
T Consensus 145 ~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l-~-g~dgVMi 222 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL-S-HVDGVMV 222 (318)
T ss_pred HHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH-h-CCCEEEE
Confidence 344555677887776665431 0 0 12456666664 58888888899999998886 3 9999987
Q ss_pred CC-----hHHHHHH
Q 017440 330 DL-----VSEITEA 338 (371)
Q Consensus 330 D~-----p~~l~~~ 338 (371)
=+ |-.+.++
T Consensus 223 gRgal~nP~if~~~ 236 (318)
T TIGR00742 223 GREAYENPYLLANV 236 (318)
T ss_pred CHHHHhCCHHHHHH
Confidence 65 5555544
No 378
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=21.50 E-value=4.2e+02 Score=26.08 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccc--------------cC----ChHH
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAI--------------FK----NPGA 292 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~----~~~~ 292 (371)
..+..+|+..|..|+++-..... ........+...+++.|+++...- +. -.+.
T Consensus 192 ~~I~~Lr~~~~~~pVgvKl~~~~---------~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a 262 (368)
T PF01645_consen 192 QLIEELRELNPGKPVGVKLVAGR---------GVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARA 262 (368)
T ss_dssp HHHHHHHHH-TTSEEEEEEE-ST---------THHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHH
T ss_pred HHHHHHHhhCCCCcEEEEECCCC---------cHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHH
Confidence 45677788888888887554321 233333336677888887663210 00 1234
Q ss_pred HHHHHHhCC----eEEEecccCChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 293 IKKIKEAKL----CLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 293 v~~~~~~Gl----~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
.+.+.+.|+ .+.+-|-+.+..++.+.+ .+|+|+|....+..+.--..
T Consensus 263 ~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~liAlGC~ 313 (368)
T PF01645_consen 263 HQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALIALGCI 313 (368)
T ss_dssp HHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHHHCT--
T ss_pred HHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhhhcchH
Confidence 455555564 455556677888888886 79999999988877654333
No 379
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=21.34 E-value=1.9e+02 Score=26.72 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 292 AIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 292 ~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
..+.+-+.|+.|+.| +-+|+-..+++. +.|+..|+.
T Consensus 115 Aae~Lv~eGF~VlPY-~~~D~v~akrL~-d~GcaavMP 150 (247)
T PF05690_consen 115 AAEILVKEGFVVLPY-CTDDPVLAKRLE-DAGCAAVMP 150 (247)
T ss_dssp HHHHHHHTT-EEEEE-E-S-HHHHHHHH-HTT-SEBEE
T ss_pred HHHHHHHCCCEEeec-CCCCHHHHHHHH-HCCCCEEEe
Confidence 345556678888888 677776666664 677777663
No 380
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.33 E-value=2.6e+02 Score=26.80 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCCHHHHHHH----HHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHH---HhCCCc
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQPDAALLI----RKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVC---LAGGLQ 277 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~~~~l~~l----~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 277 (371)
..+.++-+.|.+.|.. .+.|.|+....-..+ |......| .+........|. ....+++..+ ..-|++
T Consensus 175 GrV~aIR~aLd~ag~~-~v~IMsYsaKyASafYGPFRdAa~Sap---~~gdrktYQmDp--aN~~EAlrE~~lD~~EGAD 248 (330)
T COG0113 175 GRVGAIREALDEAGFI-DVPIMSYSAKYASAFYGPFRDAAGSAP---KFGDRKTYQMDP--ANRREALREIELDIEEGAD 248 (330)
T ss_pred chHHHHHHHHHHcCCC-cceeeehhHHHhhhccccHHHHhhccc---ccCCcceeccCC--cCHHHHHHHHHhhHhcCCc
Confidence 4466666666676655 466777665433221 22111111 111111111222 1233333332 245677
Q ss_pred eEecccccccCChHHHHHHHHh-CCeEEEecccCChHHHHH-------------------HHHhcCceEEEeCChHHHHH
Q 017440 278 GIVSEVRAIFKNPGAIKKIKEA-KLCLVSYGELNNVPEVVY-------------------MQRFMGIEGVIVDLVSEITE 337 (371)
Q Consensus 278 ~v~~~~~~~~~~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~-------------------l~~~~GVdgIiTD~p~~l~~ 337 (371)
.+.+-.... =-+.+..+++. ++++.+| -|..+-.|.+ .+++.|+|+|+|=+...+.+
T Consensus 249 ~lMVKPal~--YLDIi~~vk~~~~lP~~AY-qVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA~e~a~ 325 (330)
T COG0113 249 ILMVKPALP--YLDIIRRVKEEFNLPVAAY-QVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFAKEVAE 325 (330)
T ss_pred EEEEcCCch--HHHHHHHHHHhcCCCeEEE-ecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecHHHHHH
Confidence 665432211 12567777665 5888888 5654333321 13568999999999999998
Q ss_pred HHHh
Q 017440 338 AVSD 341 (371)
Q Consensus 338 ~l~~ 341 (371)
.|++
T Consensus 326 ~L~~ 329 (330)
T COG0113 326 WLKE 329 (330)
T ss_pred Hhhc
Confidence 8864
No 381
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.28 E-value=2.2e+02 Score=24.47 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceE--EEeC---ChHHH--HHHHHhhh
Q 017440 289 NPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEG--VIVD---LVSEI--TEAVSDFI 343 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdg--IiTD---~p~~l--~~~l~~~~ 343 (371)
..+.++.++++|+++..- |-++..........+|++. ++.+ .|+.- .++++++.
T Consensus 132 ~~~~l~~L~~~Gi~~~i~-TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAIL-TGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQ 192 (215)
T ss_dssp HHHHHHHHHHTTEEEEEE-ESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhccCcceeee-eccccccccccccccccccccccccccccccchhHHHHHHHHh
Confidence 357899999999999998 8777777777767799844 4444 35544 66665543
No 382
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=21.28 E-value=57 Score=32.96 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=25.7
Q ss_pred cCCeEEEecCCCcccccCCccccccccccCHHHHh
Q 017440 101 RDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFL 135 (371)
Q Consensus 101 kDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~ 135 (371)
.-|++||.||..|-+.|+.+. +.|.+.+..||-
T Consensus 751 ~GgVi~VsHDeRLi~eT~C~L--wVvE~Q~i~eId 783 (807)
T KOG0066|consen 751 NGGVIMVSHDERLIVETDCNL--WVVENQGIDEID 783 (807)
T ss_pred cCcEEEEecccceeeecCceE--EEEccCChhhcc
Confidence 458999999999987766542 678888888773
No 383
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=21.27 E-value=4.3e+02 Score=24.31 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCCeEEEcCCCCcccCCCCcc----cHHHHHHHHH-hCCCceEecccc
Q 017440 230 PDAALLIRKLQSTYPVFFLTNGGAQTCTDVRRS----SLDEAIKVCL-AGGLQGIVSEVR 284 (371)
Q Consensus 230 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~v~~~~~ 284 (371)
..+++.++++.|+....|+.+....+|.+-... -+.+.+++.. ..|++.++...+
T Consensus 11 ltv~~~l~~~~p~~~~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCN 70 (251)
T TIGR00067 11 LSVLKEIRKQLPKEHYIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACN 70 (251)
T ss_pred HHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 457889999999999999888766666553211 1234566666 888888776654
No 384
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.21 E-value=5.7e+02 Score=27.31 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 291 GAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 291 ~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
.++..+++.|++|.+=| |++.+++..+ +.+|||.+.=.+
T Consensus 739 ~~~~~~~~~~i~via~g-Ve~~~~~~~l-~~~g~~~~QG~~ 777 (799)
T PRK11359 739 AITSIGQSLNLTVVAEG-VETKEQFEML-RKIHCRVIQGYF 777 (799)
T ss_pred HHHHHHHHCCCeEEEEc-CCCHHHHHHH-HhcCCCEEeeCe
Confidence 56777899999999984 9999988777 589999665443
No 385
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.14 E-value=1.9e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=31.9
Q ss_pred hHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEEeCC
Q 017440 290 PGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL 331 (371)
Q Consensus 290 ~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~ 331 (371)
..++..++..|+.|.+=| |++.++...+ +.+|+|++.=.+
T Consensus 193 ~~l~~~~~~~~~~via~g-Ve~~~~~~~l-~~~Gi~~~QG~~ 232 (241)
T smart00052 193 QSIIELAQKLGLQVVAEG-VETPEQLDLL-RSLGCDYGQGYL 232 (241)
T ss_pred HHHHHHHHHCCCeEEEec-CCCHHHHHHH-HHcCCCEEeece
Confidence 356788899999999994 9999888777 489999776443
No 386
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=21.11 E-value=6.9e+02 Score=24.13 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=57.1
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHHHHH---HHhCCCceEeccccc----cc-C--------ChHH
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAIKV---CLAGGLQGIVSEVRA----IF-K--------NPGA 292 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~----~~-~--------~~~~ 292 (371)
.++++.+|+.. +++++++-+...... .. ..+..+++++ +...|++.+++...+ .. . ....
T Consensus 191 ~eiv~aIR~~vG~d~~v~iRi~~~D~~-~~--g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~ 267 (353)
T cd02930 191 VEIVRAVRAAVGEDFIIIYRLSMLDLV-EG--GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWA 267 (353)
T ss_pred HHHHHHHHHHcCCCceEEEEecccccC-CC--CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHH
Confidence 46778888765 467776544321100 00 0134444444 455677777663211 00 0 1223
Q ss_pred HHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCChHHH
Q 017440 293 IKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLVSEI 335 (371)
Q Consensus 293 v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~~l 335 (371)
.+.++++ +++|.+=|.+.+++++.+++.+-++|.|.-=++-..
T Consensus 268 ~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 268 TAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 4555554 677877667889999999974445998866554433
No 387
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.02 E-value=6.3e+02 Score=22.94 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=55.9
Q ss_pred ecCCHHHHHHHHHHCCCCCe--EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCCeE
Q 017440 226 SSFQPDAALLIRKLQSTYPV--FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCL 303 (371)
Q Consensus 226 ~Sf~~~~l~~l~~~~p~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v 303 (371)
.+|-+..++.+++. .++|+ =+.+. .....++...+.|++.|..+++...-..+.++.+|+.|.+.
T Consensus 46 iTfGp~~v~~l~~~-t~~p~DvHLMV~------------~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~ka 112 (220)
T COG0036 46 ITFGPPVVKALRKI-TDLPLDVHLMVE------------NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKA 112 (220)
T ss_pred cccCHHHHHHHhhc-CCCceEEEEecC------------CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeE
Confidence 35788999999883 23333 22222 23444555667789988888773222357999999999998
Q ss_pred EEecccCChHH-HHHHHHhcCceEEEeCCh
Q 017440 304 VSYGELNNVPE-VVYMQRFMGIEGVIVDLV 332 (371)
Q Consensus 304 ~~wgtvn~~~~-~~~l~~~~GVdgIiTD~p 332 (371)
.+=-...++-+ +.+++.....=-++|=+|
T Consensus 113 Gv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 113 GLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred EEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 76413334444 344443333333455554
No 388
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=21.01 E-value=6e+02 Score=23.19 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHHCCCCCe-EEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHHHHHHHhCC--eE
Q 017440 227 SFQPDAALLIRKLQSTYPV-FFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKL--CL 303 (371)
Q Consensus 227 Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl--~v 303 (371)
+|.+..++.+++ +.|. .-|+- ....+.++.....|++.+..+++...-..+.++.+|++|. ++
T Consensus 56 tfGp~~i~~i~~---~~~~DvHLMv-----------~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~ka 121 (228)
T PRK08091 56 TVGAIAIKQFPT---HCFKDVHLMV-----------RDQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLI 121 (228)
T ss_pred ccCHHHHHHhCC---CCCEEEEecc-----------CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceE
Confidence 678888888863 3332 11111 1234455556677999988888743222478899999998 76
Q ss_pred EE
Q 017440 304 VS 305 (371)
Q Consensus 304 ~~ 305 (371)
..
T Consensus 122 Gl 123 (228)
T PRK08091 122 GL 123 (228)
T ss_pred EE
Confidence 54
No 389
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=21.00 E-value=3.4e+02 Score=27.71 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=34.8
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
+.+...+++|||+....+ .....+.....+..+.+- +.+.++..... +.|+|.|.
T Consensus 361 ~lA~~~~adGvHl~~~d~--~~~~~r~~~~~~~~iG~S--~h~~~e~~~a~-~~gadyi~ 415 (502)
T PLN02898 361 DVALACDADGVHLGQSDM--PVRLARSLLGPGKIIGVS--CKTPEQAEQAW-KDGADYIG 415 (502)
T ss_pred HHHHhcCCCEEEeChHhc--CHHHHHHhcCCCCEEEEe--CCCHHHHHHHh-hcCCCEEE
Confidence 567788999999865432 333333322234455554 57777776664 68999987
No 390
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=20.87 E-value=7.2e+02 Score=23.51 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecCC--------HH----HHHHHHHHCC-CCCeEEEcCCCCcccCCCCcccHHHHHHHH
Q 017440 205 HALEAILKVVFEHAQGRPIMFSSFQ--------PD----AALLIRKLQS-TYPVFFLTNGGAQTCTDVRRSSLDEAIKVC 271 (371)
Q Consensus 205 ~~~~~vl~~l~~~~~~~~v~i~Sf~--------~~----~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 271 (371)
..+..+++.-++. ..+++++... .+ .++.+.+..+ .+|+++=.+-+. +++ .+..|
T Consensus 29 e~~~avi~AAee~--~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~---------~~e-~i~~a 96 (286)
T PRK08610 29 EFTQAILEASQEE--NAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS---------SFE-KCKEA 96 (286)
T ss_pred HHHHHHHHHHHHH--CCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC---------CHH-HHHHH
Confidence 3456666665554 3456666422 11 1222222222 368877655432 333 34567
Q ss_pred HhCCCceEecccccc------cCChHHHHHHHHhCCeEEE----e-cc----------cCChHHHHHHHHhcCceEEEeC
Q 017440 272 LAGGLQGIVSEVRAI------FKNPGAIKKIKEAKLCLVS----Y-GE----------LNNVPEVVYMQRFMGIEGVIVD 330 (371)
Q Consensus 272 ~~~~~~~v~~~~~~~------~~~~~~v~~~~~~Gl~v~~----w-gt----------vn~~~~~~~l~~~~GVdgIiTD 330 (371)
...|+++|..+.+.+ ..|.+.++.+|..|+.|=+ = |. .-++++..++..+.|||.+-.-
T Consensus 97 i~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAva 176 (286)
T PRK08610 97 IDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPA 176 (286)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEee
Confidence 778998888765432 3467899999999987632 1 10 1267777777766788876544
Q ss_pred C
Q 017440 331 L 331 (371)
Q Consensus 331 ~ 331 (371)
.
T Consensus 177 i 177 (286)
T PRK08610 177 L 177 (286)
T ss_pred c
Confidence 3
No 391
>PRK00211 sulfur relay protein TusC; Validated
Probab=20.80 E-value=90 Score=25.28 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=29.6
Q ss_pred ccchHHHHHHHHhCCCCEEEEEEeeecCCeEEEecCCC
Q 017440 75 KENTILSFNAAARHPLDFIEFDVQVTRDGCPVIFHDNF 112 (371)
Q Consensus 75 PENTl~Af~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~ 112 (371)
-|.+-+|++.|+...+-.-|++|.+..||++.+.-+..
T Consensus 15 ~~~~~eaLd~ala~~a~~~~v~vff~~DgV~~l~~~q~ 52 (119)
T PRK00211 15 TASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQQ 52 (119)
T ss_pred CHHHHHHHHHHHHHhcccCCeeEEEEhhhHHHHhcCCC
Confidence 46888999999886544459999999999988766533
No 392
>PRK08999 hypothetical protein; Provisional
Probab=20.75 E-value=2.8e+02 Score=26.09 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred HHHHhCCCceEecccccccCChHHHHHHHHhCCeEEEecccCChHHHHHHHHhcCceEEE
Q 017440 269 KVCLAGGLQGIVSEVRAIFKNPGAIKKIKEAKLCLVSYGELNNVPEVVYMQRFMGIEGVI 328 (371)
Q Consensus 269 ~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~Gl~v~~wgtvn~~~~~~~l~~~~GVdgIi 328 (371)
+.|...+++|||+..... .....+. ...++.+.+ ++++.++..+.. ..|+|.|+
T Consensus 198 ~la~~~~~~GvHl~~~d~--~~~~~r~-~~~~~~ig~--S~h~~~~~~~a~-~~~~dyi~ 251 (312)
T PRK08999 198 ELAEDLGADGVHLTSAQL--AALAARP-LPAGRWVAA--SCHDAEELARAQ-RLGVDFAV 251 (312)
T ss_pred HHHHhcCCCEEEcChhhc--ChHhhcc-CCCCCEEEE--ecCCHHHHHHHH-hcCCCEEE
Confidence 567788999999875432 2211211 112334444 467777776764 68999985
No 393
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=20.62 E-value=91 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.6
Q ss_pred cccchHHHH-HHHHhCCCCEEEEEEeeecCCeEEEecCCCc
Q 017440 74 IKENTILSF-NAAARHPLDFIEFDVQVTRDGCPVIFHDNFI 113 (371)
Q Consensus 74 ~PENTl~Af-~~A~~~Gad~IE~DV~lTkDG~lVv~HD~~L 113 (371)
+.=|-++.- +-|...|+--+|.-||+-||.+.|-.||..+
T Consensus 261 arfnelatkaqiaqsfgavnletrvwmpkdevavynhdeyv 301 (347)
T PF06673_consen 261 ARFNELATKAQIAQSFGAVNLETRVWMPKDEVAVYNHDEYV 301 (347)
T ss_pred hHHHHHHHHHHHHHhcCccceeeeeeccccceeeecccceE
Confidence 334544433 3355689999999999999999999999874
No 394
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=20.59 E-value=7e+02 Score=23.27 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCceEecc-------cccccCChHHHHHHHHhCCeEEEeccc-------------CCh---HHHHHHHH
Q 017440 264 LDEAIKVCLAGGLQGIVSE-------VRAIFKNPGAIKKIKEAKLCLVSYGEL-------------NNV---PEVVYMQR 320 (371)
Q Consensus 264 ~~~~~~~~~~~~~~~v~~~-------~~~~~~~~~~v~~~~~~Gl~v~~wgtv-------------n~~---~~~~~l~~ 320 (371)
+..+.+++...|..-|.+. +..+.++-..+..+++.|++|.+=-|- -+. ..+.+...
T Consensus 132 ~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAv 211 (258)
T TIGR01362 132 MKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAV 211 (258)
T ss_pred HHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 4445666666665433322 333334556778888889998764110 111 12222223
Q ss_pred hcCceEEEeC
Q 017440 321 FMGIEGVIVD 330 (371)
Q Consensus 321 ~~GVdgIiTD 330 (371)
..|+||++..
T Consensus 212 A~GaDGl~iE 221 (258)
T TIGR01362 212 AVGIDGLFME 221 (258)
T ss_pred HhCCCEEEEE
Confidence 6899999875
No 395
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=20.55 E-value=5e+02 Score=24.96 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCceEecccccc--------------cCChHHHHHHHHh--CCeEEEecccCChHHHHHHHHhcCceEEEe
Q 017440 266 EAIKVCLAGGLQGIVSEVRAI--------------FKNPGAIKKIKEA--KLCLVSYGELNNVPEVVYMQRFMGIEGVIV 329 (371)
Q Consensus 266 ~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~v~~~~~~--Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiT 329 (371)
+.++.+...|++.+.++.... ...-+.+..+++. .++|.+-|-+.+.+++.+++. |+|||+.
T Consensus 155 ~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmI 232 (333)
T PRK11815 155 DFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMI 232 (333)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEE
Confidence 334445556777666543210 0123567777775 588888888999999988863 7999986
Q ss_pred CC-----hHHHHHHHH
Q 017440 330 DL-----VSEITEAVS 340 (371)
Q Consensus 330 D~-----p~~l~~~l~ 340 (371)
=+ |..+.++..
T Consensus 233 GRa~l~nP~~~~~~~~ 248 (333)
T PRK11815 233 GRAAYHNPYLLAEVDR 248 (333)
T ss_pred cHHHHhCCHHHHHHHH
Confidence 54 666666543
No 396
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=20.39 E-value=1.4e+02 Score=28.85 Aligned_cols=46 Identities=24% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCCceEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeecC
Q 017440 47 KFPKFVVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTRD 102 (371)
Q Consensus 47 ~~~~~~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkD 102 (371)
...+|.|||-=|+..+ .--|=-.+-...|.+.|||.|-+--+.|+|
T Consensus 11 ~~~~~~iIAEig~NHn----------G~le~A~~lIdaAk~aGADavKfQt~~~~d 56 (347)
T COG2089 11 KDKKPFIIAEIGANHN----------GDLERAKELIDAAKEAGADAVKFQTFYTPD 56 (347)
T ss_pred CCCCcEEEeeeccccc----------CcHHHHHHHHHHHHHcCcceeeeecccccc
Confidence 3678999999999873 345666788889999999999988877766
No 397
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.33 E-value=6.7e+02 Score=22.93 Aligned_cols=136 Identities=9% Similarity=0.028 Sum_probs=77.8
Q ss_pred ccccccccCCCccccccccCCCCCCc----eEEe--cCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEee
Q 017440 26 LHSPRVCKGVNEDCDETKSGYKFPKF----VVMG--HRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQV 99 (371)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~iiA--HRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~l 99 (371)
+...+|.+|....|...+..-...+. .-+- +.|.... ..-=|..+++-.+.++|+ ||+-++.
T Consensus 24 ltl~R~P~Gi~~~~FfqK~~p~~~P~wv~t~~i~~~~~~~~~~----------y~~v~d~~~L~wlan~g~--iE~H~w~ 91 (228)
T cd04864 24 ITLERFPDGIGKPGFYQKEAPEHFPDWIERVEVPKRGDGGSVH----------HVLCDDAATLVYLADQAS--ITPHVWL 91 (228)
T ss_pred eEeEECCCCCCCCceeecCCCCCCCCceEEEEeecCCCCCccc----------eEEeCCHHHHHHHHHcCc--EEeeCCC
Confidence 34567888998888877654322222 1222 3232221 345589999999999997 9999998
Q ss_pred ecCCeEEEecCCCcccccCCccccccccccCHHHHhccCCCCCCCCcCCccccccCCCccccccccCCCCccCHHHHHHh
Q 017440 100 TRDGCPVIFHDNFIFTKDEGEIIEKRVTDITLAEFLSYGPQNDPENVGKPMLRKTKDGRIFEWKVEKDTPLCTLQEAFEK 179 (371)
Q Consensus 100 TkDG~lVv~HD~~L~r~t~g~~~~~~i~~~T~~eL~~l~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~evL~~ 179 (371)
+.-+.+ +.-++. .+|..-.+.+|++..+.- -.+.|+|+.
T Consensus 92 s~~~~~-----e~PD~~----vfDLDP~~~~f~~v~~~A--------------------------------~~~r~~L~~ 130 (228)
T cd04864 92 SRADDL-----EHPDLM----VFDLDPSADDIEAVRTAA--------------------------------LAVRELLDE 130 (228)
T ss_pred CCCCCC-----CCCCEE----EEecCCCCCCHHHHHHHH--------------------------------HHHHHHHHH
Confidence 765421 111111 011112233566554431 125566665
Q ss_pred cC----------CCceEEEEeccCCcccchhHHHHHHHHHHHHHHHHhc
Q 017440 180 VD----------QSVGFNVELKFDDQLVYTEEELTHALEAILKVVFEHA 218 (371)
Q Consensus 180 ~~----------~~~~l~iEiK~~~~~~~~~~~~~~~~~~vl~~l~~~~ 218 (371)
+. +++.+++-|+... .-+++..+++.+.+.+.+..
T Consensus 131 ~gL~~f~KTSG~kGlHv~vPl~~~~----~~~~~r~fa~~lA~~l~~~~ 175 (228)
T cd04864 131 LGLPSFVKTTGSRGFHVVVPLDGRG----DFDDVRAFAAEAADALAKRD 175 (228)
T ss_pred cCCccceEccCCCeEEEEEEcCCCC----CHHHHHHHHHHHHHHHHHHC
Confidence 42 4678888888643 22445577888888777654
No 398
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=20.32 E-value=5.7e+02 Score=24.03 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=49.9
Q ss_pred cHHHHHHHHHhCCCceEeccccc--------ccCChHHHHHHHHh-CCeEEEec--ccCChHHHHHHHHhcCceEEE--e
Q 017440 263 SLDEAIKVCLAGGLQGIVSEVRA--------IFKNPGAIKKIKEA-KLCLVSYG--ELNNVPEVVYMQRFMGIEGVI--V 329 (371)
Q Consensus 263 ~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~~v~~~~~~-Gl~v~~wg--tvn~~~~~~~l~~~~GVdgIi--T 329 (371)
+.+++.++.+..|++.+.+.... ..++.+.++.++++ +++++..| -++ .+.+.+++ +.|+++|- |
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i-~~Gi~kiNv~T 231 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAI-KLGIAKINIDT 231 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEECc
Confidence 56777777766777776643110 12456777888776 68888887 444 35566665 68988874 5
Q ss_pred CChHHHHHHHHhhh
Q 017440 330 DLVSEITEAVSDFI 343 (371)
Q Consensus 330 D~p~~l~~~l~~~~ 343 (371)
|.-....+.+++..
T Consensus 232 ~l~~a~~~~~~~~~ 245 (282)
T TIGR01859 232 DCRIAFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555566666554
No 399
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.30 E-value=6.4e+02 Score=22.68 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=38.1
Q ss_pred ChHHHHHHHHh-CCeEEEecccCChHHHHHHHHhcCceEEEeCC-----hHHHHHHHHhh
Q 017440 289 NPGAIKKIKEA-KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDL-----VSEITEAVSDF 342 (371)
Q Consensus 289 ~~~~v~~~~~~-Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~-----p~~l~~~l~~~ 342 (371)
+.++++.+.+. +++|.+=|-+.+.+++.+++ ..|+++++... |+.+.++.+++
T Consensus 59 ~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l-~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 59 MLDVVERVAEEVFIPLTVGGGIRSLEDARRLL-RAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCceEEECchhhhChHHHHHHHHHc
Confidence 34566666554 57777766799999998886 58999998875 55666666554
No 400
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.30 E-value=3.6e+02 Score=25.34 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=37.4
Q ss_pred hHHHHHHHHh---CCeEEEecccCChHHHHHHHHhcCceEEEeCCh--HHHHHHHHh
Q 017440 290 PGAIKKIKEA---KLCLVSYGELNNVPEVVYMQRFMGIEGVIVDLV--SEITEAVSD 341 (371)
Q Consensus 290 ~~~v~~~~~~---Gl~v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p--~~l~~~l~~ 341 (371)
.+.++.++++ ..++.+- +++.++....+ +.|+|.|.-|.+ +.+.+.++.
T Consensus 169 ~~~v~~~k~~~p~~~~I~VE--v~tleea~~A~-~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIE--CESLEEAKNAM-NAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhCCCCceEEEE--eCCHHHHHHHH-HcCCCEEEECCCCHHHHHHHHHH
Confidence 3577788776 3567775 78888888886 799999999985 667777654
No 401
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=20.28 E-value=3.4e+02 Score=25.03 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhC-CeEEEe--cccCChHHHHHHHHhcCceEEEe-------CChHHHHHH-HHhhhccchhhhhhhhhcc
Q 017440 289 NPGAIKKIKEAK-LCLVSY--GELNNVPEVVYMQRFMGIEGVIV-------DLVSEITEA-VSDFIKNEEEIKEEIVFAE 357 (371)
Q Consensus 289 ~~~~v~~~~~~G-l~v~~w--gtvn~~~~~~~l~~~~GVdgIiT-------D~p~~l~~~-l~~~~~~~~~~~~~~~~~~ 357 (371)
.-+++...++.| ++|.-+ |-|-++.+..-+. .+|+|||+. ++|....+. +........|.....+..+
T Consensus 194 p~elv~~~~~~grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFKS~~P~~~A~AIV~A~~~yddp~~laevs~~ 272 (296)
T COG0214 194 PYELVKEVAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSSNPEKRAKAIVEATTHYDDPEVLAEVSEG 272 (296)
T ss_pred hHHHHHHHHHhCCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccCCCCHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 347888999998 556443 3466788876664 799999984 667666554 4444455666665555544
Q ss_pred cC
Q 017440 358 DG 359 (371)
Q Consensus 358 ~~ 359 (371)
-|
T Consensus 273 lg 274 (296)
T COG0214 273 LG 274 (296)
T ss_pred hc
Confidence 44
No 402
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.26 E-value=2.8e+02 Score=25.82 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=33.9
Q ss_pred ChHHHHHHHHhCCeEEEecccC-----ChHHHHHHHHhcCceEEEeCChHHHHHHHH
Q 017440 289 NPGAIKKIKEAKLCLVSYGELN-----NVPEVVYMQRFMGIEGVIVDLVSEITEAVS 340 (371)
Q Consensus 289 ~~~~v~~~~~~Gl~v~~wgtvn-----~~~~~~~l~~~~GVdgIiTD~p~~l~~~l~ 340 (371)
....++.+++.|..|... .-+ |..++..++.+.+.|.|+.|....-.++.+
T Consensus 42 ~~~~~~~i~~~g~~v~~~-~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~ 97 (279)
T TIGR03590 42 PGDLIDLLLSAGFPVYEL-PDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEK 97 (279)
T ss_pred CHHHHHHHHHcCCeEEEe-cCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHH
Confidence 345578889999998765 322 233555666667899999998755444433
No 403
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.24 E-value=5.6e+02 Score=23.74 Aligned_cols=105 Identities=11% Similarity=-0.004 Sum_probs=53.9
Q ss_pred HHHHHHHHHHC-CCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEeccccc--ccCChHHHHHHHHhCCeEEEe
Q 017440 230 PDAALLIRKLQ-STYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRA--IFKNPGAIKKIKEAKLCLVSY 306 (371)
Q Consensus 230 ~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~~~~Gl~v~~w 306 (371)
.+.++.+.+.. ++.++..+..... .. .+.+..+...+++.+...... +-.-.+.++.++++|+.|.+.
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~--------~~-~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 58 DEFLRRLLGDSKGNTKIAVMVDYGN--------DD-IDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHHhhhccCCEEEEEECCCC--------CC-HHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 45556665543 3555554443321 01 223445556666665543221 111246788888999887643
Q ss_pred c---ccCChHHHHHH---HHhcCceEEE-eC-----ChHHHHHHHHhhh
Q 017440 307 G---ELNNVPEVVYM---QRFMGIEGVI-VD-----LVSEITEAVSDFI 343 (371)
Q Consensus 307 g---tvn~~~~~~~l---~~~~GVdgIi-TD-----~p~~l~~~l~~~~ 343 (371)
. +--+++...++ +.+.|++.|. .| .|..+.++++...
T Consensus 129 ~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 129 LMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred EEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 1 11123333222 2357888874 34 3777777766554
No 404
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=20.19 E-value=1.8e+02 Score=26.60 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=45.9
Q ss_pred ccccccccCCCccccccccCCCCCCc----eEEecCCCCCCccCCchhhhcccccchHHHHHHHHhCCCCEEEEEEeeec
Q 017440 26 LHSPRVCKGVNEDCDETKSGYKFPKF----VVMGHRGSGMNMLQSSDQRMKSIKENTILSFNAAARHPLDFIEFDVQVTR 101 (371)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~iiAHRG~~~~~~~~~~~~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTk 101 (371)
+...+|.+|....|...+..-...+. .-+.|.|.... ..-=|..+++-.+.++|+ ||+-++.+.
T Consensus 24 ltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~~----------y~~v~d~~~Lvwlan~g~--iE~H~w~~r 91 (227)
T cd04862 24 LSLVRCPDGIGGECFFQKHAGAGLPPGVEQLEIEESGGTEP----------YLYIEDAEGLLALVQMGV--LEFHTWGAR 91 (227)
T ss_pred eEeEECCCCCCCCceeecCCCCCCCCceEEEeeccCCCccc----------eEEeCCHHHHHHHHHhCc--EEeeCCCCC
Confidence 34567889998888877755433332 22455554331 345588999999999997 999999976
Q ss_pred CC
Q 017440 102 DG 103 (371)
Q Consensus 102 DG 103 (371)
-+
T Consensus 92 ~~ 93 (227)
T cd04862 92 ID 93 (227)
T ss_pred CC
Confidence 65
No 405
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.11 E-value=7.4e+02 Score=23.34 Aligned_cols=84 Identities=14% Similarity=0.185 Sum_probs=48.2
Q ss_pred HHHHHHHHHCCCCCeEEEcCCCCcccCCCCcccHHHHHHHHHhCCCceEecccccccCChHHH----HHHHHhC----Ce
Q 017440 231 DAALLIRKLQSTYPVFFLTNGGAQTCTDVRRSSLDEAIKVCLAGGLQGIVSEVRAIFKNPGAI----KKIKEAK----LC 302 (371)
Q Consensus 231 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v----~~~~~~G----l~ 302 (371)
..+..+|+..|..++-.=. .+++++.+. ...|++.|-++-- +++.+ +.+++.| ..
T Consensus 171 ~av~~~r~~~~~~kIeVEv------------~~leea~~a-~~agaDiI~LDn~----~~e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEV------------ESLEDALKA-AKAGADIIMLDNM----TPEEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHhCCCCcEEEEe------------CCHHHHHHH-HHcCcCEEEECCC----CHHHHHHHHHHHHhcCcCCCEE
Confidence 4556666666654432211 346665554 4678887766522 44444 4444433 45
Q ss_pred EEEecccCChHHHHHHHHhcCceEEEeCChH
Q 017440 303 LVSYGELNNVPEVVYMQRFMGIEGVIVDLVS 333 (371)
Q Consensus 303 v~~wgtvn~~~~~~~l~~~~GVdgIiTD~p~ 333 (371)
+-+-|-+| .+...++. ..|||.|.|-.+.
T Consensus 234 leaSGGI~-~~ni~~yA-~tGvD~Is~galt 262 (278)
T PRK08385 234 IEVSGGIT-PENIEEYA-KLDVDVISLGALT 262 (278)
T ss_pred EEEECCCC-HHHHHHHH-HcCCCEEEeChhh
Confidence 66666564 44555554 6999999887654
Done!