BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017441
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|D Chain D, Crystal Structure Of Cdk4CYCLIN D3
Length = 306
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 99/245 (40%), Gaps = 12/245 (4%)
Query: 46 CEEKESPLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDP----ISDEILILARKEVVE 101
C E P + L D L SL+ E E +VP + EI RK +
Sbjct: 19 CCEGTRHAPRAGPDPRLLGDQRVLQSLLRLE--ERYVPRASYFQCVQREIKPHMRKMLAY 76
Query: 102 WVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVP 161
W+L V LA+NY DR++ +K + QL+ C+ LA+K+ ET P
Sbjct: 77 WMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQL---QLLGAVCMLLASKLRET-TP 132
Query: 162 LLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEF 221
L ++ + + ++ E+LVL L+W + V F I+ RL L
Sbjct: 133 LTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALV 192
Query: 222 LYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPV--EHQNLLMGVLNISQD 279
+ L D F Y PS +AT ++ +Q + C+ E LL G+ D
Sbjct: 193 KKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVD 252
Query: 280 KLKEC 284
L+ C
Sbjct: 253 CLRAC 257
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|D Chain D, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|B Chain B, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|D Chain D, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|B Chain B, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|D Chain D, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|B Chain B, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|D Chain D, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|B Chain B, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|D Chain D, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|B Chain B, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|D Chain D, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|B Chain B, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|D Chain D, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|B Chain B, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|D Chain D, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 265
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 44 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 100
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 101 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 158
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 159 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 192
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAA 189
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 264
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 10/156 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATA 249
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAA 188
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 262
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAA 189
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|D Chain D, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
Length = 262
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|1VIN|A Chain A, Bovine Cyclin A3
Length = 268
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|D Chain D, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1JSU|B Chain B, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FVV|B Chain B, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|D Chain D, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1OKV|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|B Chain B, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|D Chain D, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|B Chain B, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|D Chain D, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|B Chain B, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|D Chain D, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1URC|B Chain B, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|D Chain D, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|2C5O|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2CCH|B Chain B, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|D Chain D, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2I40|B Chain B, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|D Chain D, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|3EID|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|B Chain B, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|D Chain D, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|B Chain B, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|D Chain D, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2WEV|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 260
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 95
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 96 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 153
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 154 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 187
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
Length = 269
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
Length = 268
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|D Chain D, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|B Chain B, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|D Chain D, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|B Chain B, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|D Chain D, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
Length = 262
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 41 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 97
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 98 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLAFDLAAPTINQFLTQYFLHQQPA 155
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
+ ++ E LS+I ++ YLPS +A A
Sbjct: 156 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAAAAF 190
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|D Chain D, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1H24|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|B Chain B, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|D Chain D, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|B Chain B, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|D Chain D, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2C5N|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|B Chain B, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|D Chain D, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2UUE|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|B Chain B, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|D Chain D, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2WMA|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|B Chain B, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|D Chain D, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 259
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 38 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 94
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 95 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 152
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 153 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 186
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|D Chain D, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
Length = 261
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 40 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 96
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 97 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 154
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 155 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 188
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|D Chain D, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|2IW6|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW8|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW9|B Chain B, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|D Chain D, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 260
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 39 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 95
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 96 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 153
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 154 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 187
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|D Chain D, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1GY3|B Chain B, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|D Chain D, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1H1P|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|B Chain B, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|D Chain D, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1P5E|B Chain B, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|D Chain D, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1PKD|B Chain B, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|D Chain D, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|2C6T|B Chain B, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|D Chain D, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|B Chain B, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|D Chain D, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CCI|B Chain B, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|D Chain D, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2UZB|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|B Chain B, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|D Chain D, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4EOI|B Chain B, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|D Chain D, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOJ|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOK|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOM|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EON|B Chain B, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|D Chain D, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOO|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOP|B Chain B, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|D Chain D, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOQ|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOR|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOS|B Chain B, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|D Chain D, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 258
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 93
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 94 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 151
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 152 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 185
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|D Chain D, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 261
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 93
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 94 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 151
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 152 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 185
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|D Chain D, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
Length = 256
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 10/157 (6%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 35 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL---QLVGTAAMLLASKF 91
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFF-DHIVRRLGL 213
+E P + + + + D Y K + RME LVL L + + T F + + +
Sbjct: 92 EEIYPPEVAEFVYITDDTYT--KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 149
Query: 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ ++ E LS+I ++ YLPS +A A
Sbjct: 150 NCKVESLAMFLGE---LSLIDADPYLKYLPSVIAGAA 183
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|D Chain D, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 40 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 96
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRL--- 211
+E P + + + + D Y K + RME LVL L + + T F L
Sbjct: 97 EEIYPPEVAEFVYITDDTY--SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPA 154
Query: 212 GLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
K FL LS+I ++ YLPS +A A
Sbjct: 155 NCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGAAF 189
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|D Chain D, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 258
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 93
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRL--- 211
+E P + + + + D Y K + RME LVL L + + T F L
Sbjct: 94 EEIYPPEVAEFVYITDDTY--SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPA 151
Query: 212 GLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
K FL LS+I ++ YLPS +A A
Sbjct: 152 NCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGAAF 186
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|D Chain D, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 257
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R +V+W++ V + T LAVNY DRF+ S S + K QLV A + LA+K
Sbjct: 37 RAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---LQLVGTAAMLLASKF 93
Query: 156 DETQVPLLLD-LQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRL--- 211
+E P + + + + D Y K + RME LVL L + + T F L
Sbjct: 94 EEIYPPEVAEFVYITDDTY--SKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYFLHLQPA 151
Query: 212 GLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATM 251
K FL LS+I ++ YLPS +A A
Sbjct: 152 NCKVESLAMFLGE-----LSLIDADPYLKYLPSLIAGAAF 186
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E
Length = 283
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 49 KESPLPPVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILIL---ARKEVVEWVLR 105
+ SPLP L W + E + I K++ ++ ++ +L R +++W++
Sbjct: 6 RGSPLPV------LSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLME 59
Query: 106 VKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD 165
V + T LA ++FDR++ + + + QL+ ++ L +AAK++E P L
Sbjct: 60 VCEVYKLHRETFYLAQDFFDRYMATQ--ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQ 117
Query: 166 LQ-VKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFD 205
V D I MEL+++ L+WR++P+T +S+ +
Sbjct: 118 FAYVTDG--ACSGDEILTMELMIMKALKWRLSPLTIVSWLN 156
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W99|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9F|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 87 ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAV 146
+ E+L RK V W+L V LA+NY DRF+ S + K QL+
Sbjct: 48 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL---SLEPVKKSRLQLLGA 104
Query: 147 ACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDH 206
C+ +A+K+ ET +PL + + + +MELL+++ L+W + +TP F +H
Sbjct: 105 TCMFVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 163
Query: 207 IVRRL 211
+ ++
Sbjct: 164 FLSKM 168
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1
pdb|2B9R|B Chain B, Crystal Structure Of Human Cyclin B1
Length = 269
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 76 EKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK 135
E + P + E+ R +++W+++V+ F T + V+ DRF+ ++S K
Sbjct: 18 EAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPK 77
Query: 136 DKPWMGQLVAVACLSLAAKVDETQVPLLLDLQ-VKDPKYVFEAKTIQRMELLVLSTLQWR 194
M QLV V + +A+K +E P + D V D Y I++ME+ +L L +
Sbjct: 78 K---MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT--KHQIRQMEMKILRALNFG 132
Query: 195 MNPVTPISFF 204
+ P+ F
Sbjct: 133 LGRPLPLHFL 142
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 260
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 10/176 (5%)
Query: 76 EKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK 135
E+++ P + E+ R +++W+++V+ F T + V+ DRF+ ++ K
Sbjct: 16 EEEQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPK 75
Query: 136 DKPWMGQLVAVACLSLAAKVDETQVPLLLDLQ-VKDPKYVFEAKTIQRMELLVLSTLQWR 194
M QLV V + +A+K +E P + D V D Y I++ME+ +L L +
Sbjct: 76 K---MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT--KHQIRQMEMKILRALNFG 130
Query: 195 MNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250
+ P+ H +RR + E ++L+ + D + + PS +A
Sbjct: 131 LGRPLPL----HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGA 182
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 257
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 87 ISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAV 146
+ E+L RK V W+L V LA+NY DRF+ S + K QL+
Sbjct: 34 VQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFL---SLEPVKKSRLQLLGA 90
Query: 147 ACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDH 206
C+ +A+K+ ET +PL + + + +MELL+++ L+W + +TP F +H
Sbjct: 91 TCMFVASKMKET-IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEH 149
Query: 207 IVRRL 211
+ ++
Sbjct: 150 FLSKM 154
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K
Length = 258
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R+E ++ V G T + YF RF + HSF K + + CL LA KV
Sbjct: 41 RREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSF---KQFPRYVTGACCLFLAGKV 97
Query: 156 DE----------TQVPLLLDLQVK----DPKYVFEAKTIQRMELLVLSTLQWRMNPVTPI 201
+E T LL D+Q DPK + + +E ++L T+++ + P
Sbjct: 98 EETPKKCKDIIKTARSLLNDVQFGQFGDDPK-----EEVMVLERILLQTIKFDLQVEHPY 152
Query: 202 SFFDHIVRRL 211
F ++L
Sbjct: 153 QFLLKYAKQL 162
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|B Chain B, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|C Chain C, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
pdb|2PK2|D Chain D, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1
Derived From A Fusion Complex With Eiav Tat
Length = 358
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R++ + + + LT A+ Y RF + SF + + G VA A L LAAKV
Sbjct: 38 RQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTR---FPGNSVAPAALFLAAKV 94
Query: 156 DE 157
+E
Sbjct: 95 EE 96
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|B Chain B, Structure Of Cdk9CYCLIN T F241L
Length = 259
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R++ + + + LT A+ Y RF + SF + + G VA A L LAAKV
Sbjct: 38 RQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ---FPGNSVAPAALFLAAKV 94
Query: 156 DE 157
+E
Sbjct: 95 EE 96
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 266
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV 155
R++ + + + LT A+ Y RF + SF + + G VA A L LAAKV
Sbjct: 38 RQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ---FPGNSVAPAALFLAAKV 94
Query: 156 DE 157
+E
Sbjct: 95 EE 96
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 60 HDLFWDDNELLSLICKEKKE------NFVPSDPISDEILILARK 97
HD FW NELL + KE + NFVP I + I+ K
Sbjct: 22 HDSFWVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEK 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,859,292
Number of Sequences: 62578
Number of extensions: 349102
Number of successful extensions: 753
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 35
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)