Query 017441
Match_columns 371
No_of_seqs 334 out of 1699
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017441.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017441hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.4E-46 4.8E-51 363.0 25.1 233 58-296 31-269 (306)
2 1f5q_B Gamma herpesvirus cycli 100.0 1.1E-45 3.9E-50 347.3 16.9 231 55-295 12-243 (252)
3 2f2c_A Cyclin homolog, V-cycli 100.0 5.2E-44 1.8E-48 336.4 25.6 230 59-295 14-249 (254)
4 1g3n_C V-cyclin; cyclin-depend 100.0 1.5E-44 5.2E-49 340.6 20.5 231 58-295 12-249 (257)
5 2w96_A G1/S-specific cyclin-D1 100.0 2.7E-43 9.3E-48 334.5 22.2 229 60-296 20-259 (271)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 2.5E-42 8.7E-47 325.9 20.4 232 64-307 6-242 (260)
7 1w98_B Cyclin E, G1/S-specific 100.0 2.8E-41 9.6E-46 322.7 24.0 220 59-294 10-242 (283)
8 2b9r_A Human cyclin B1; cell c 100.0 1.2E-41 4E-46 323.0 17.6 232 64-307 6-241 (269)
9 2i53_A Cyclin K; cell cycle, t 100.0 8E-34 2.8E-38 267.0 16.4 200 91-295 36-252 (258)
10 3rgf_B Cyclin-C; protein kinas 100.0 8.6E-33 2.9E-37 264.2 22.3 193 91-295 38-243 (285)
11 2ivx_A Cyclin-T2; transcriptio 100.0 8.8E-33 3E-37 260.0 20.7 195 91-295 26-241 (257)
12 1zp2_A RNA polymerase II holoe 100.0 2.5E-32 8.7E-37 253.8 16.3 188 96-295 28-221 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 7.7E-32 2.6E-36 265.1 12.9 195 91-295 33-248 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.4E-29 4.9E-34 245.9 20.9 197 92-295 53-262 (323)
15 1c9b_A General transcription f 99.9 5.9E-25 2E-29 200.1 22.2 186 95-295 4-190 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 7.2E-21 2.4E-25 172.1 22.6 185 94-293 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 1.3E-17 4.5E-22 163.1 6.9 183 96-293 126-321 (345)
18 4bbr_M Transcription initiatio 99.3 4.5E-12 1.5E-16 123.7 9.0 183 97-294 127-322 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.2 7.9E-06 2.7E-10 77.1 10.6 108 99-211 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 95.8 0.078 2.7E-06 46.7 11.4 88 199-293 11-98 (200)
21 1c9b_A General transcription f 95.1 0.16 5.5E-06 44.9 10.9 87 200-293 8-94 (207)
22 4bbr_M Transcription initiatio 90.9 1.2 4.1E-05 42.8 10.2 88 199-293 128-215 (345)
23 1zp2_A RNA polymerase II holoe 88.5 4 0.00014 36.5 11.3 87 201-294 32-127 (235)
24 3k7a_M Transcription initiatio 86.1 0.5 1.7E-05 45.4 3.9 87 200-293 129-215 (345)
25 2i53_A Cyclin K; cell cycle, t 84.8 4.4 0.00015 36.6 9.5 87 101-192 153-250 (258)
26 2ivx_A Cyclin-T2; transcriptio 82.9 6.9 0.00023 35.3 9.9 86 101-191 148-238 (257)
27 3rgf_B Cyclin-C; protein kinas 81.8 3 0.0001 38.7 7.1 81 101-190 159-239 (285)
28 3h4c_A Transcription factor TF 77.4 38 0.0013 30.0 12.8 147 99-256 15-169 (260)
29 2pk2_A Cyclin-T1, protein TAT; 77.0 5.7 0.00019 38.2 7.6 86 101-191 155-245 (358)
30 2b9r_A Human cyclin B1; cell c 75.5 21 0.00072 32.4 10.8 86 202-293 43-130 (269)
31 2w96_A G1/S-specific cyclin-D1 72.3 33 0.0011 31.1 11.3 68 224-293 80-149 (271)
32 1jkw_A Cyclin H; cell cycle, c 70.4 29 0.00098 32.6 10.6 83 203-292 63-154 (323)
33 2cch_B Cyclin A2, cyclin-A; co 70.1 22 0.00076 32.0 9.5 55 237-293 75-131 (260)
34 1g3n_C V-cyclin; cyclin-depend 66.9 29 0.00098 31.2 9.5 71 221-293 71-143 (257)
35 2f2c_A Cyclin homolog, V-cycli 65.1 34 0.0012 30.7 9.6 87 202-294 57-145 (254)
36 3g33_B CCND3 protein; Ser/Thr 61.0 46 0.0016 30.9 9.9 65 227-293 97-163 (306)
37 1w98_B Cyclin E, G1/S-specific 56.3 65 0.0022 29.4 10.0 69 223-293 72-143 (283)
38 3m03_A ORC6, origin recognitio 52.4 46 0.0016 25.7 6.8 76 103-187 6-87 (95)
39 1f5q_B Gamma herpesvirus cycli 33.9 2.5E+02 0.0087 24.9 10.7 55 237-293 85-141 (252)
40 3m03_A ORC6, origin recognitio 28.3 1.4E+02 0.0048 22.9 6.1 48 243-293 45-92 (95)
41 3o0g_D Cyclin-dependent kinase 22.7 2.6E+02 0.0089 22.9 6.9 72 98-172 29-110 (149)
42 2pmi_B PHO85 cyclin PHO80, ami 22.0 4.7E+02 0.016 24.1 10.8 88 199-292 76-166 (293)
43 1unl_D Cyclin-dependent kinase 20.4 4.1E+02 0.014 22.8 8.2 75 98-175 74-158 (208)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=363.05 Aligned_cols=233 Identities=26% Similarity=0.331 Sum_probs=199.0
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCccc
Q 017441 58 QEHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQ 134 (371)
Q Consensus 58 ~~~~~f~~~e~l~~Ll~~E~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~ 134 (371)
-|++++|++|++.+|+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|||||+++..+.
T Consensus 31 ~dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~ 109 (306)
T 3g33_B 31 PDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQRE-IKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR 109 (306)
T ss_dssp ------CHHHHHHHHHHHGGGGSCSSCCTTTSTTT-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC
T ss_pred CCCcccchHHHHHHHHHHHHHhCCCcHHHhhcCcc-CCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc
Confidence 457788999999999999999987 45 445665 99999999999999999999999999999999999999999888
Q ss_pred CCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCC
Q 017441 135 KDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGL 213 (371)
Q Consensus 135 ~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~ 213 (371)
+.+ +||+|+|||+||+|+||..+|.+.++ .+++ +.|++++|++||+.||++|+|++++|||++||.+|++.++.
T Consensus 110 ~~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~--~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~ 184 (306)
T 3g33_B 110 KAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTD--HAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL 184 (306)
T ss_dssp GGG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC
T ss_pred HHH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhc--cCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 655 99999999999999999999999998 5554 45689999999999999999999999999999999999887
Q ss_pred CCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCC--ccchHHHHHHHhCCCHHHHHHHHHHHHHH
Q 017441 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCN--PVEHQNLLMGVLNISQDKLKECYLLILEL 291 (371)
Q Consensus 214 ~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~--~~~~~~~L~~~~~i~~e~l~~C~~~i~el 291 (371)
...........+.+++..++.++.|+.|+||+||||||++|+..++... ...|.+.|..++|++.++|.+|++.|.++
T Consensus 185 ~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 185 PRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6543322335577888889999999999999999999999999887432 23467888899999999999999999999
Q ss_pred HhccC
Q 017441 292 SRGNG 296 (371)
Q Consensus 292 ~~~~~ 296 (371)
+.+..
T Consensus 265 ~~~~l 269 (306)
T 3g33_B 265 LRESL 269 (306)
T ss_dssp HHTC-
T ss_pred HHHHH
Confidence 98753
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-45 Score=347.29 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=195.4
Q ss_pred CccccCCCCCCHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCccc
Q 017441 55 PVLQEHDLFWDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQ 134 (371)
Q Consensus 55 ~~~~~~~~f~~~e~l~~Ll~~E~~~~~~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~ 134 (371)
....|++++ +|+++.+|+++|.++.| ...|. .+++.+|.++|+||.+|+.+|+++++|+++||+|+||||+...++
T Consensus 12 ~~~~dp~l~-~d~i~~~l~~~E~~~~p--~~~q~-~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~ 87 (252)
T 1f5q_B 12 SSLLNEEDC-RQMIYRSEREHDARMVG--VNVDQ-HFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRID 87 (252)
T ss_dssp CTTCCHHHH-HHHHHHHHHHHHHHHSS--SSHHH-HHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCC
T ss_pred cCcCCHHHh-HHHHHHHHHHHHHHhCc--CccCC-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcC
Confidence 334556665 56999999999999987 33343 388999999999999999999999999999999999999999988
Q ss_pred CCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCC
Q 017441 135 KDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGL 213 (371)
Q Consensus 135 ~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~ 213 (371)
+.+ +||+|+|||+||+|+||+.+|.+.++ .+++ +.|++++|++||+.||++|+|+++.|||++|+.+|++.++.
T Consensus 88 ~~~---lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~--~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~ 162 (252)
T 1f5q_B 88 REN---YQSTAAVALHIAGKVRAYMPIKATQLAYLCG--GATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHA 162 (252)
T ss_dssp GGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHC--TTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTC
T ss_pred HHH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC
Confidence 766 99999999999999999999999998 5555 45689999999999999999999999999999999999876
Q ss_pred CCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 017441 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSR 293 (371)
Q Consensus 214 ~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~ 293 (371)
.......+...+.+++..++.|+.|+.|+||+|||||+.+++....+ ...+|...|..++|+++++|.+|++.|.+++.
T Consensus 163 ~~~~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~-~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~ 241 (252)
T 1f5q_B 163 PREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD-YYENRIDGVCKSLYITKEELHQCCDLVDIAIV 241 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 65432234466788888999999999999999999997666532211 11235677888999999999999999999986
Q ss_pred cc
Q 017441 294 GN 295 (371)
Q Consensus 294 ~~ 295 (371)
.-
T Consensus 242 ~~ 243 (252)
T 1f5q_B 242 SF 243 (252)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=5.2e-44 Score=336.38 Aligned_cols=230 Identities=14% Similarity=0.159 Sum_probs=197.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccC
Q 017441 59 EHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK 135 (371)
Q Consensus 59 ~~~~f~~~e~l~~Ll~~E~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~ 135 (371)
|+.+++++|++. |+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++
T Consensus 14 dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v~~ 91 (254)
T 2f2c_A 14 DSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTE-VTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTK 91 (254)
T ss_dssp CHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCT
T ss_pred CcccccHHHHHH-HHHHHHhhCCCchhhhhcCcc-CCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCcCH
Confidence 445567899999 9999999988 45 335555 999999999999999999999999999999999999999999988
Q ss_pred CCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCC
Q 017441 136 DKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLK 214 (371)
Q Consensus 136 ~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~ 214 (371)
.+ +||+|+|||+||+|+||..+|.+.++ .+++ +.|++++|.+||+.||++|+|++++|||++|+.+|++.++.+
T Consensus 92 ~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~--~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~ 166 (254)
T 2f2c_A 92 KT---LQKIGAACVLIGSKIRTVKPMTVSKLTYLSC--DCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKIP 166 (254)
T ss_dssp TT---HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC-----CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCC
T ss_pred HH---ccHHHHHHHHHHHHhcccCCCCHHHHHHHhC--CCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCC
Confidence 77 99999999999999999999999998 4444 456899999999999999999999999999999999999876
Q ss_pred CcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCC--CccchHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 017441 215 THLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPC--NPVEHQNLLMGVLNISQDKLKECYLLILELS 292 (371)
Q Consensus 215 ~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~--~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~ 292 (371)
......+...+.+++..++.|+.|++|+||+|||||+++|+...+.. .+.+|...|..++|++.++|.+|++.|.+++
T Consensus 167 ~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 167 EDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 54322223457788888999999999999999999999999875321 1222378899999999999999999999998
Q ss_pred hcc
Q 017441 293 RGN 295 (371)
Q Consensus 293 ~~~ 295 (371)
.+-
T Consensus 247 ~~~ 249 (254)
T 2f2c_A 247 SLY 249 (254)
T ss_dssp HTC
T ss_pred HhC
Confidence 753
No 4
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.5e-44 Score=340.64 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=199.6
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCccc
Q 017441 58 QEHDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQ 134 (371)
Q Consensus 58 ~~~~~f~~~e~l~~Ll~~E~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~ 134 (371)
-|+.++|++|++ +|+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|+|||++...+.
T Consensus 12 ~dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~~v~ 89 (257)
T 1g3n_C 12 LDPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQS-LTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS 89 (257)
T ss_dssp ----CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCccccHHHHH-HHHHHHHHhCCChhHHHhcCcc-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccCCCC
Confidence 356677889999 99999999988 45 334555 89999999999999999999999999999999999999999888
Q ss_pred CCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCC
Q 017441 135 KDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGL 213 (371)
Q Consensus 135 ~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~ 213 (371)
+.+ +||+|+|||+||||+||..+|.+.++ .+++. .|++++|.+||+.||++|+|++++|||++|+.+|++.++.
T Consensus 90 ~~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~ 164 (257)
T 1g3n_C 90 KEH---FQKTGSACLLVASKLRSLTPISTSSLCYAAAD--SFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVG 164 (257)
T ss_dssp HHH---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTT--CSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSC
T ss_pred HHH---HHHHHHHHHHHHHHHccccCCCHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 766 99999999999999999999999999 56554 4589999999999999999999999999999999999987
Q ss_pred CCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCC---CccchHHHHHHHhCCCHHHHHHHHHHHHH
Q 017441 214 KTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPC---NPVEHQNLLMGVLNISQDKLKECYLLILE 290 (371)
Q Consensus 214 ~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~---~~~~~~~~L~~~~~i~~e~l~~C~~~i~e 290 (371)
+......+...+.+++..++.|+.|++|+||+||||||++|+..++.. ....|...|..++|++.++|.+|++.|.+
T Consensus 165 ~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 165 GSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 654322233557788888899999999999999999999999887632 12469999999999999999999999999
Q ss_pred HHhcc
Q 017441 291 LSRGN 295 (371)
Q Consensus 291 l~~~~ 295 (371)
++.+.
T Consensus 245 l~~~~ 249 (257)
T 1g3n_C 245 SVSDF 249 (257)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 99764
No 5
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.7e-43 Score=334.50 Aligned_cols=229 Identities=23% Similarity=0.347 Sum_probs=195.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CC-CCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCC
Q 017441 60 HDLFWDDNELLSLICKEKKENF--VP-SDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKD 136 (371)
Q Consensus 60 ~~~f~~~e~l~~Ll~~E~~~~~--~~-~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~ 136 (371)
++++ ++|++.+|+++|.++.| +| ...|.+ +++.+|..+|+||.+|+.+|+++++|+++||+|||||++...+.+.
T Consensus 20 p~~~-~~~i~~~l~~~E~~~~p~~~y~~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~ 97 (271)
T 2w96_A 20 ANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKE-VLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKS 97 (271)
T ss_dssp ------CHHHHHHHHHHHHTCCCTTHHHHTCSS-CCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCCCTT
T ss_pred Cccc-HHHHHHHHHHHHHHhCCCchHHHhcCCc-CCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCcCHH
Confidence 3344 68999999999999987 44 445655 8999999999999999999999999999999999999999999887
Q ss_pred CCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCC
Q 017441 137 KPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKT 215 (371)
Q Consensus 137 ~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~ 215 (371)
+ +||+|+|||+||+|+||+.+|.+.++ .+++ +.|++++|.+||+.||++|+|++++|||++|+.+|++.++..+
T Consensus 98 ~---lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~--~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~ 172 (271)
T 2w96_A 98 R---LQLLGATCMFVASKMKETIPLTAEKLCIYTD--NSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAE 172 (271)
T ss_dssp T---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTT--TSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCH
T ss_pred H---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhc--CCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCc
Confidence 7 99999999999999999988899998 4544 4568999999999999999999999999999999999988764
Q ss_pred cccHHHH-HHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCC--CC----ccchHHHHHHHhCCCHHHHHHHHHHH
Q 017441 216 HLHWEFL-YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEP--CN----PVEHQNLLMGVLNISQDKLKECYLLI 288 (371)
Q Consensus 216 ~~~~~~l-~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~--~~----~~~~~~~L~~~~~i~~e~l~~C~~~i 288 (371)
... ..+ +.+..++..++.|+.|++|+||.||||||++|+..++. .. ...|.+.|..++|++.++|.+|++.|
T Consensus 173 ~~~-~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i 251 (271)
T 2w96_A 173 ENK-QIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQI 251 (271)
T ss_dssp HHH-HHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 322 223 45777888888999999999999999999999987642 11 12366788899999999999999999
Q ss_pred HHHHhccC
Q 017441 289 LELSRGNG 296 (371)
Q Consensus 289 ~el~~~~~ 296 (371)
.+++..+.
T Consensus 252 ~~l~~~~~ 259 (271)
T 2w96_A 252 EALLESSL 259 (271)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHHH
Confidence 99998753
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=2.5e-42 Score=325.94 Aligned_cols=232 Identities=25% Similarity=0.281 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHhhcCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchh
Q 017441 64 WDDNELLSLICKEKKENF--VPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMG 141 (371)
Q Consensus 64 ~~~e~l~~Ll~~E~~~~~--~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~l 141 (371)
|.+|++.+|.+.|.++.| +|-..|.+ ++..+|..+|+||.+|+.+|+++++|+++||+|+|||++...+++.+ +
T Consensus 6 Y~~di~~~l~~~E~~~~p~~~y~~~q~~-i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~---l 81 (260)
T 2cch_B 6 YHEDIHTYLREMEVKCKPKVGYMKKQPD-ITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK---L 81 (260)
T ss_dssp THHHHHHHHHHHHHHTCCCTTGGGGCSS-CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH---H
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH---H
Confidence 468999999999999887 55333444 99999999999999999999999999999999999999999998776 9
Q ss_pred HHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHH
Q 017441 142 QLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWE 220 (371)
Q Consensus 142 qLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~ 220 (371)
||+|+|||+||+|+||..+|.+.|+ .++++ .|++++|.+||+.||++|+|++++|||++|+.+|+..++..+. .
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~--~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~---~ 156 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDD--TYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC---K 156 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTS--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH---H
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcC--CcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH---H
Confidence 9999999999999999999999999 56554 4689999999999999999999999999999999998876542 3
Q ss_pred HHHHHHHHHHHHhchhh-ccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhccC-CC
Q 017441 221 FLYRCEHLLLSVIADSR-FMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRGNG-SQ 298 (371)
Q Consensus 221 ~l~~~~~ll~~~l~d~~-fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~~-~~ 298 (371)
....+.+++..++.++. |++|+||.||+|||++|...++. ..|...+..++|++.++|.+|++.|.+++.+.. ..
T Consensus 157 ~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~ 233 (260)
T 2cch_B 157 VESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHA 233 (260)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcc
Confidence 44667778888888999 99999999999999999988764 358889999999999999999999999987653 22
Q ss_pred CCcccccCC
Q 017441 299 NQSCKRKHF 307 (371)
Q Consensus 299 ~~~~~~k~~ 307 (371)
.++.++||.
T Consensus 234 ~~~i~~Ky~ 242 (260)
T 2cch_B 234 QQSIREKYK 242 (260)
T ss_dssp CCHHHHHHT
T ss_pred hHHHHHHHC
Confidence 345566764
No 7
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2.8e-41 Score=322.66 Aligned_cols=220 Identities=21% Similarity=0.321 Sum_probs=188.6
Q ss_pred cCCCCCCH--HHHHHHHHHHhhcCC--CCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-Ccc
Q 017441 59 EHDLFWDD--NELLSLICKEKKENF--VPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILS-HSF 133 (371)
Q Consensus 59 ~~~~f~~~--e~l~~Ll~~E~~~~~--~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~-~~v 133 (371)
+++++|++ |++.+|+++|.++.+ +|...|.+ +++.+|..+|+||.+|+.+|++.++|+++||+|||||++. ..+
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~-i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v 88 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPL-LQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV 88 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTT-CCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCC-CCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCC
Confidence 46778876 999999999999887 45333433 8999999999999999999999999999999999999998 567
Q ss_pred cCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC
Q 017441 134 QKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG 212 (371)
Q Consensus 134 ~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~ 212 (371)
.+. .+||+|+|||+||+|+||..+|.+.++ .+++. .|++++|.+||+.||++|+|++++|||++|+.+|+..++
T Consensus 89 ~~~---~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~--~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~ 163 (283)
T 1w98_B 89 VKT---LLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG--ACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAY 163 (283)
T ss_dssp CGG---GHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT--SSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHT
T ss_pred CHH---HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhc
Confidence 654 499999999999999999999999999 55544 468999999999999999999999999999999999887
Q ss_pred CCCcc-------cHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHH
Q 017441 213 LKTHL-------HWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECY 285 (371)
Q Consensus 213 ~~~~~-------~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~ 285 (371)
.++.. .......+.+++..++.|+.|++|+||+||||||++|. |.+.|..++|+++++|.+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c~ 233 (283)
T 1w98_B 164 LNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENCV 233 (283)
T ss_dssp CCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHHH
T ss_pred cCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHHH
Confidence 65431 11222345567788889999999999999999999884 45778899999999999999
Q ss_pred HHHHHHHhc
Q 017441 286 LLILELSRG 294 (371)
Q Consensus 286 ~~i~el~~~ 294 (371)
+.|.+++..
T Consensus 234 ~~l~~~~~~ 242 (283)
T 1w98_B 234 KWMVPFAMV 242 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888763
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.2e-41 Score=322.99 Aligned_cols=232 Identities=19% Similarity=0.267 Sum_probs=200.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHH
Q 017441 64 WDDNELLSLICKEKKENFVPSDPISDEILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQL 143 (371)
Q Consensus 64 ~~~e~l~~Ll~~E~~~~~~~~~~q~~~i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqL 143 (371)
|.+|++.+|.++|.++.++...++.++++..+|..+++||.+|+.+|+++++|+++||+|+|||++...+++.+ +||
T Consensus 6 Y~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~---lql 82 (269)
T 2b9r_A 6 YVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM---LQL 82 (269)
T ss_dssp -CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG---HHH
T ss_pred HHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH---hhH
Confidence 35688999999999987632223233699999999999999999999999999999999999999999998777 999
Q ss_pred HHHHHHHHhhcccccCccccchh-hccCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHH
Q 017441 144 VAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFL 222 (371)
Q Consensus 144 lavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l 222 (371)
+|+|||+||+|+||..+|.+.|+ .+++. .|++++|.+||+.||++|+|++++|||++|+.+|+..++.+. ...
T Consensus 83 v~~acL~iA~K~eE~~~p~~~d~~~~~~~--~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~----~~~ 156 (269)
T 2b9r_A 83 VGVTAMFIASKYEEMYPPEIGDFAFVTDN--TYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV----EQH 156 (269)
T ss_dssp HHHHHHHHHHHHHCSSCCCHHHHHHHTCS--SSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH----HHH
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH----HHH
Confidence 99999999999999999999999 55544 468999999999999999999999999999999998776542 445
Q ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhccCC---CC
Q 017441 223 YRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRGNGS---QN 299 (371)
Q Consensus 223 ~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~~~---~~ 299 (371)
..+.+++..++.++.|++|+||.||+|||++|...++.. .|.+.+..++|++.++|.+|++.|.+++..... ..
T Consensus 157 ~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~~~~~~~~ 233 (269)
T 2b9r_A 157 TLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKH 233 (269)
T ss_dssp HHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHTTTSCCSC
T ss_pred HHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 678889999999999999999999999999999988754 488899999999999999999999998865421 23
Q ss_pred CcccccCC
Q 017441 300 QSCKRKHF 307 (371)
Q Consensus 300 ~~~~~k~~ 307 (371)
++.++||.
T Consensus 234 ~ai~~Ky~ 241 (269)
T 2b9r_A 234 MTVKNKYA 241 (269)
T ss_dssp CHHHHHTT
T ss_pred HHHHHHhc
Confidence 44566664
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8e-34 Score=267.02 Aligned_cols=200 Identities=19% Similarity=0.234 Sum_probs=168.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchhh-cc
Q 017441 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQ-VK 169 (371)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl~-v~ 169 (371)
....+|..+++||.+|+.+|+++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||. +|.+.++. ++
T Consensus 36 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~-~~~l~d~~~~~ 111 (258)
T 2i53_A 36 TEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEET-PKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccc-cccHHHHHHHH
Confidence 67899999999999999999999999999999999999999998877 999999999999999996 77888883 21
Q ss_pred ---CCCccc------cHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccC
Q 017441 170 ---DPKYVF------EAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMC 240 (371)
Q Consensus 170 ---~~~~~f------~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~ 240 (371)
.....| ++++|++||+.||++|+|+++++||+.|+.+|++.++........+...+.+++..++.++.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~ 191 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQ 191 (258)
T ss_dssp HHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred HHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhc
Confidence 111122 47899999999999999999999999999999999876543223567788899999999999999
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCccchHH-----HHHHH--hCCCHHHHHHHHHHHHHHHhcc
Q 017441 241 YLPSTLATATMLHTIQEVEPCNPVEHQN-----LLMGV--LNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 241 ~~PS~IAaAai~~a~~~l~~~~~~~~~~-----~L~~~--~~i~~e~l~~C~~~i~el~~~~ 295 (371)
|+||.||+|||++|...++.. ...|.. .|+.. .|++.++|.+|++.|.+++...
T Consensus 192 ~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 192 WEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred cChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999887632 122221 23343 4999999999999999998764
No 10
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-33 Score=264.18 Aligned_cols=193 Identities=18% Similarity=0.165 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hc-
Q 017441 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV- 168 (371)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v- 168 (371)
....+|..+++||.+|+.+|+++++|+++|++|||||+....+.+.+ +|++|+|||+||||+||+.+|.+.++ .+
T Consensus 38 ~e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 38 EYWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 44679999999999999999999999999999999999999999777 99999999999999999987777777 22
Q ss_pred -----------cCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhh
Q 017441 169 -----------KDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSR 237 (371)
Q Consensus 169 -----------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~ 237 (371)
....|.+++++|++||+.||++|+|++.++||+.||..|++.++.. ..+.+.+..++..++.+..
T Consensus 115 ~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~----~~~~~~A~~~l~~sl~t~~ 190 (285)
T 3rgf_B 115 TSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE----DMLLPLAWRIVNDTYRTDL 190 (285)
T ss_dssp HHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH----HHHHHHHHHHHHHHTTSSH
T ss_pred HHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC----HHHHHHHHHHHHHHHccCh
Confidence 2445677899999999999999999999999999999999999853 2566788899999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Q 017441 238 FMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 238 fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~ 295 (371)
++.|+||.||+|||++|...++... ..|...+|++.++|.+|++.|.+++...
T Consensus 191 ~l~~~Ps~IAaAaiylA~~~~~~~~-----~~W~~~~~~~~~~l~~~~~~il~ly~~~ 243 (285)
T 3rgf_B 191 CLLYPPFMIALACLHVACVVQQKDA-----RQWFAELSVDMEKILEIIRVILKLYEQW 243 (285)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTTCCC-----HHHHHTSCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHcCCCh-----hhHHHHHCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998876432 3556778999999999999999999763
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=8.8e-33 Score=259.98 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hc-
Q 017441 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV- 168 (371)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v- 168 (371)
....+|..+++||.+|+.+|+++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||+ +|.+.++ .+
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~-p~~l~d~~~~~ 101 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQ-ARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccC-CcCHHHHHHHH
Confidence 55689999999999999999999999999999999999999998777 999999999999999999 7888888 22
Q ss_pred -------------cCCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc-
Q 017441 169 -------------KDPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIA- 234 (371)
Q Consensus 169 -------------~~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~- 234 (371)
.+..|.+.+++|++||+.||++|+|+++++||+.|+..|++.++... +....+.+++..++.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~----~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK----DLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc----HHHHHHHHHHHhhhhc
Confidence 12344445999999999999999999999999999999999987642 455677778777764
Q ss_pred hhhccCCcHHHHHHHHHHHHHHhcCCCC-----ccchHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Q 017441 235 DSRFMCYLPSTLATATMLHTIQEVEPCN-----PVEHQNLLMGVLNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 235 d~~fl~~~PS~IAaAai~~a~~~l~~~~-----~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~ 295 (371)
+..++.|+||.||+|||++|...++... ...|...+ ..+++.++|.+|++.|.+++...
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~~~ 241 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILEKT 241 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHHhC
Confidence 4458999999999999999998876321 12354321 23899999999999999999764
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.98 E-value=2.5e-32 Score=253.77 Aligned_cols=188 Identities=15% Similarity=0.118 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccC-CCCchhHHHHHHHHHHhhcccccCccccchh-hccC---
Q 017441 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQK-DKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKD--- 170 (371)
Q Consensus 96 R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~-~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~--- 170 (371)
|..+++||.+|+..+++++.|+++|++|||||++...+.+ .+ +|++|+|||+||||+||+ ++.+.|+ .++.
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~ 103 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEEC-PVHIRTICNEANDLW 103 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccC-cccHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987 66 999999999999999997 6678888 4432
Q ss_pred -CCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHH
Q 017441 171 -PKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATA 249 (371)
Q Consensus 171 -~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaA 249 (371)
..+.+++++|.+||+.||++|+|++.++||+.||..|++.++.. .+..+.+..++..++.+..++.|+||.||+|
T Consensus 104 ~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 104 SLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred cchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 23567899999999999999999999999999999999977553 3567788899999999999999999999999
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Q 017441 250 TMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 250 ai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~ 295 (371)
||++|....+.. .+.|...+ .|++.++|.+|++.|.+++...
T Consensus 180 ai~lA~~~~~~~-~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~ 221 (235)
T 1zp2_A 180 ALLISCCNDENT-IPKLLDLI---KSTDAFKVILCVQRIISIYYFE 221 (235)
T ss_dssp HHHHHHTSCTTH-HHHHHHHC---CHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhcCCC-CCCCcchh---hcCCHHHHHHHHHHHHHHHhhC
Confidence 999999876521 11233333 2899999999999999999875
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.97 E-value=7.7e-32 Score=265.14 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=163.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchhh-cc
Q 017441 91 ILILARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQ-VK 169 (371)
Q Consensus 91 i~~~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl~-v~ 169 (371)
....+|..+++||.+|+.+|+++++|+++|++|||||++...+.+.+ +|++|+||||||+|+||+ +|.+.|+. +.
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~-p~~l~d~v~v~ 108 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQ-PKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccC-CCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999998777 999999999999999999 77888872 21
Q ss_pred --------------CCCccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhch
Q 017441 170 --------------DPKYVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIAD 235 (371)
Q Consensus 170 --------------~~~~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d 235 (371)
+..|.+.+++|++||+.||++|+|++.++||+.||..|++.++.. .++...+.+++..++..
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC----HHHHHHHHHHHHHHTTT
T ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhc
Confidence 234545589999999999999999999999999999999998754 24567787888777753
Q ss_pred -hhccCCcHHHHHHHHHHHHHHhcCCCC-----ccchHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Q 017441 236 -SRFMCYLPSTLATATMLHTIQEVEPCN-----PVEHQNLLMGVLNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 236 -~~fl~~~PS~IAaAai~~a~~~l~~~~-----~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~ 295 (371)
..++.|+||.||+|||++|...++... ...|...+ ..+++.++|.+|++.|.+++...
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTTC
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHhC
Confidence 448999999999999999999876221 12343321 23789999999999999998654
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.97 E-value=1.4e-29 Score=245.86 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hc
Q 017441 92 LILARKEVVEWVLRVKAHFG--FTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QV 168 (371)
Q Consensus 92 ~~~~R~~~v~Wi~~v~~~~~--l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v 168 (371)
...+|...++||.+||.+|+ +++.|+++|++|||||++...+.+.+ +|++|+|||+||||+||+ ++.+.++ .+
T Consensus 53 E~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~-~~~l~d~v~~ 128 (323)
T 1jkw_A 53 EMTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEF-NVSSPQFVGN 128 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcC-CCCHHHHHHH
Confidence 35789999999999999999 99999999999999999999998777 999999999999999999 5678887 33
Q ss_pred cCCC---ccccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhC-----CCCcccHHHHHHHHHHHHHHhchhhccC
Q 017441 169 KDPK---YVFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLG-----LKTHLHWEFLYRCEHLLLSVIADSRFMC 240 (371)
Q Consensus 169 ~~~~---~~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~-----~~~~~~~~~l~~~~~ll~~~l~d~~fl~ 240 (371)
.... ..+++++|++||+.||++|+|++.++||+.||..|+..+. ... ...+...+..++..++.+..++.
T Consensus 129 ~~~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~--~~~l~~~A~~~l~~sl~t~~~l~ 206 (323)
T 1jkw_A 129 LRESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILEN--PEILRKTADDFLNRIALTDAYLL 206 (323)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCC--HHHHHHHHHHHHHHHTTSTHHHH
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHhccHHHc
Confidence 2222 2357899999999999999999999999999999997762 222 12455778889988999999999
Q ss_pred CcHHHHHHHHHHHHHHhcCCCCccchHHHHHHH--hCCCHHHHHHHHHHHHHHHhcc
Q 017441 241 YLPSTLATATMLHTIQEVEPCNPVEHQNLLMGV--LNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 241 ~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~--~~i~~e~l~~C~~~i~el~~~~ 295 (371)
|+||.||+|||++|...++... ..|...+... .+++.++|.+|++.|.+++...
T Consensus 207 ~~Ps~IAaAai~lA~~~~~~~~-~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 207 YTPSQIALTAILSSASRAGITM-ESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCC-TTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCCh-HHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 9999999999999998877432 3587766554 6789999999999999999764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.93 E-value=5.9e-25 Score=200.13 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCc
Q 017441 95 ARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKY 173 (371)
Q Consensus 95 ~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~ 173 (371)
....+.++|.+++..+++++.|..+|++||+||+....+...+ .+++|+|||+||+|+||. ++.+.|+ .+..
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~-p~~l~di~~~~~--- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGV-PRTFKEICAVSR--- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS---
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC---
Confidence 4568899999999999999999999999999999999888777 999999999999999998 6788888 3322
Q ss_pred cccHHHHHHHHHHHHHHcCccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHH
Q 017441 174 VFEAKTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLH 253 (371)
Q Consensus 174 ~f~~~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~ 253 (371)
++.++|.++|+.||++|+|++..++|+.|+..|...++.++ +..+.+..++..++.+.-+++++|+.||+|||++
T Consensus 77 -~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiyl 151 (207)
T 1c9b_A 77 -ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYM 151 (207)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHH
Confidence 57999999999999999999999999999999999998764 4556777788777777778999999999999999
Q ss_pred HHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Q 017441 254 TIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRGN 295 (371)
Q Consensus 254 a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~~ 295 (371)
|....+.. .+.+.+..++|++..+|.+|++.|.+.....
T Consensus 152 A~~~~~~~---~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~~ 190 (207)
T 1c9b_A 152 ASQASAEK---RTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 190 (207)
T ss_dssp HHHTSSSC---CCHHHHHHHHTCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 99987632 3677899999999999999999998766543
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=7.2e-21 Score=172.09 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCC
Q 017441 94 LARKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPK 172 (371)
Q Consensus 94 ~~R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~ 172 (371)
.....+.++|.+++..+++++.+...|..|++||+....+...+ .+.+|+|||++|+|.|+. +..+.|+ .+..
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~-p~~l~di~~~~~-- 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKV-PRTLDEIADIAR-- 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTC-CCCHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHC--
Confidence 34568999999999999999999999999999999998777666 999999999999999996 6788888 3322
Q ss_pred ccccHHHHHHHHHHHHHHcCccccC--CChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHH
Q 017441 173 YVFEAKTIQRMELLVLSTLQWRMNP--VTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250 (371)
Q Consensus 173 ~~f~~~~I~~mE~~IL~~L~w~l~~--~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAa 250 (371)
.+.++|.++++.|++.|+|++.+ ++|..|+..|...+++++ +..+.+..++..+..+.-+.+++|+.||+||
T Consensus 81 --v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAa 154 (200)
T 1ais_B 81 --VDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAA 154 (200)
T ss_dssp --SCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHH
Confidence 47999999999999999999999 999999999999998764 4557788888888888888999999999999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 017441 251 MLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSR 293 (371)
Q Consensus 251 i~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~ 293 (371)
|++|....+.. .+.+.+..++|+++..|.+|++.|.+.+.
T Consensus 155 ly~A~~~~~~~---~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 155 LYIASLLEGEK---RTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 99999887633 37789999999999999999999998765
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-17 Score=163.08 Aligned_cols=183 Identities=10% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCcc
Q 017441 96 RKEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYV 174 (371)
Q Consensus 96 R~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~ 174 (371)
...+...|..++..++++..+.-.|..||.|++....+...+ .+.+++|||+||+|.|++ +..+.|+ .+. .
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~-prtl~ei~~~~--~-- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLI--H-- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBS-SCCHHHHHHSS--S--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCC-CccHHHHHHHH--C--
Confidence 357789999999999999999999999999999998887666 899999999999999998 6788888 332 2
Q ss_pred ccHHHHHHHHHHHHHHcC------------ccccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCc
Q 017441 175 FEAKTIQRMELLVLSTLQ------------WRMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYL 242 (371)
Q Consensus 175 f~~~~I~~mE~~IL~~L~------------w~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~ 242 (371)
.+.++|.++++.|++.|+ +.+.+++|..|+..|...+++.. ++.+.+..++..+..+.-+.+++
T Consensus 198 v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~----~v~~~A~~i~~~~~~~~l~~Gr~ 273 (345)
T 3k7a_M 198 VKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM----QVTTSAEYTAKKCKEIKEIAGKS 273 (345)
T ss_dssp CCSHHHHHHHHHHHHHHTCC------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhchhcCCC
Confidence 478999999999999999 99999999999999999998864 34566777777777777788999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 017441 243 PSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSR 293 (371)
Q Consensus 243 PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~ 293 (371)
|+.|||||||+|....+.. .+...+..++|++...|+.+++.|.+...
T Consensus 274 P~~IAaAaIylAa~~~~~~---~t~~eIa~~~~Vse~TIr~~ykel~~~~~ 321 (345)
T 3k7a_M 274 PITIAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999876532 26678889999999999999999988663
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.29 E-value=4.5e-12 Score=123.73 Aligned_cols=183 Identities=10% Similarity=0.105 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccc
Q 017441 97 KEVVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVF 175 (371)
Q Consensus 97 ~~~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f 175 (371)
..+...|.+++..++++..+.-.|..+|.+++....+.... ...+++|||++|+|.++. +..+.|+ .+.. .
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~-prtl~eI~~~~~----v 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEV-ARTFKEIQSLIH----V 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT----C
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCC-CccHHHHHHHhC----C
Confidence 45677889999999999999999999999999987776555 889999999999999987 5677777 2221 3
Q ss_pred cHHHHHHHHHHHHHHcCcc------------ccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcH
Q 017441 176 EAKTIQRMELLVLSTLQWR------------MNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLP 243 (371)
Q Consensus 176 ~~~~I~~mE~~IL~~L~w~------------l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~P 243 (371)
+.++|.+..+.|.+.|+.. +..++|.+|+..|...|++... +.+.+..++..+..+.-..+.+|
T Consensus 199 ~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~----v~~~A~~i~~~~~~~~i~~GR~P 274 (345)
T 4bbr_M 199 KTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQ----VTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp CTTHHHHHHHHHHHCC----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHHhcccccCCCh
Confidence 6789999999999999974 7788999999999999988653 34555566665555445578999
Q ss_pred HHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Q 017441 244 STLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSRG 294 (371)
Q Consensus 244 S~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~~ 294 (371)
+.||+||||+|....+... -...+..+.|++..-|+..++.|.+....
T Consensus 275 ~~IAAAaIylAa~l~g~~~---t~~eIa~v~~Vse~TIr~rykel~~~~~~ 322 (345)
T 4bbr_M 275 ITIAVVSIYLNILLFQIPI---TAAKVGQTLQVTEGTIKSGYKILYEHRDK 322 (345)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999998765321 34678888999999999999888775543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.17 E-value=7.9e-06 Score=77.09 Aligned_cols=108 Identities=9% Similarity=0.070 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchh-hccCCCccccH
Q 017441 99 VVEWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDL-QVKDPKYVFEA 177 (371)
Q Consensus 99 ~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl-~v~~~~~~f~~ 177 (371)
+-+|+.++..+-+++..++..|+.|+||+.....--.-.++..+-+-++||.+|+|+-+-....-... .+ + .++.
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV--g--Gisl 152 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV--G--GVRC 152 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH--H--TSCH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc--c--CcCH
Confidence 56788899999999999999999999999875432222355588899999999999955434443444 34 2 3579
Q ss_pred HHHHHHHHHHHHHcCccccCCChhHHHHHHHHHh
Q 017441 178 KTIQRMELLVLSTLQWRMNPVTPISFFDHIVRRL 211 (371)
Q Consensus 178 ~~I~~mE~~IL~~L~w~l~~~Tp~~Fl~~fl~~l 211 (371)
+++.+||+..|..|+|++.+. +-.|..+++...
T Consensus 153 ~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 153 HELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp HHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 999999999999999998654 666766665543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.84 E-value=0.078 Score=46.67 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=68.7
Q ss_pred ChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCH
Q 017441 199 TPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQ 278 (371)
Q Consensus 199 Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~ 278 (371)
..+.++..+...+++++ .....+..+.........+-+.+|-.+|+||+++|.+..+.. --...+..+++++.
T Consensus 11 ~a~~~I~~~~~~L~L~~----~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p---~~l~di~~~~~v~~ 83 (200)
T 1ais_B 11 FALSELDRITAQLKLPR----HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVP---RTLDEIADIARVDK 83 (200)
T ss_dssp HHHHHHHHHHHHHTCCH----HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCC---CCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHHCCCH
Confidence 45778899999998864 455666666666655555678999999999999999877632 23467788899999
Q ss_pred HHHHHHHHHHHHHHh
Q 017441 279 DKLKECYLLILELSR 293 (371)
Q Consensus 279 e~l~~C~~~i~el~~ 293 (371)
.+|..+++.|.+.+.
T Consensus 84 ~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 84 KEIGRSYRFIARNLN 98 (200)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988664
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.11 E-value=0.16 Score=44.87 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHH
Q 017441 200 PISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQD 279 (371)
Q Consensus 200 p~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e 279 (371)
.+.+|..+...+++++ ..+..+..+.........+.+++|-.||+||+++|.+.-+.. .-...+..+++++..
T Consensus 8 a~~~I~~~~~~L~L~~----~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p---~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 8 AFKEITTMADRINLPR----NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVP---RTFKEICAVSRISKK 80 (207)
T ss_dssp HHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCC---CCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCC---CCHHHHHHHHCCCHH
Confidence 4678888888888764 345555556656555566789999999999999999876532 234677888999999
Q ss_pred HHHHHHHHHHHHHh
Q 017441 280 KLKECYLLILELSR 293 (371)
Q Consensus 280 ~l~~C~~~i~el~~ 293 (371)
++.++++.|.+.+.
T Consensus 81 ~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 81 EIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999888664
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=90.93 E-value=1.2 Score=42.80 Aligned_cols=88 Identities=6% Similarity=0.052 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCH
Q 017441 199 TPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQ 278 (371)
Q Consensus 199 Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~ 278 (371)
..+..|..+...+++++ .+...+..+...+...--+-+.+...|||||+|+|++..+.. --...+..++++++
T Consensus 128 ~a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~p---rtl~eI~~~~~v~~ 200 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA---RTFKEIQSLIHVKT 200 (345)
T ss_dssp HHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCB---CCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCC---ccHHHHHHHhCCCH
Confidence 34556677777888764 344556555555543333457788999999999999876632 24467888999999
Q ss_pred HHHHHHHHHHHHHHh
Q 017441 279 DKLKECYLLILELSR 293 (371)
Q Consensus 279 e~l~~C~~~i~el~~ 293 (371)
.+|..+++.|.+.+.
T Consensus 201 keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 201 KEFGKTLNIMKNILR 215 (345)
T ss_dssp THHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987665
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=88.46 E-value=4 Score=36.45 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccC-CcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh-----
Q 017441 201 ISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMC-YLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL----- 274 (371)
Q Consensus 201 ~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~-~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~----- 274 (371)
.++|......+++.. ..+..+..++...+....+.+ +.|-.||+|||++|.+.-+... -.+.+..++
T Consensus 32 ~~~i~~v~~~l~L~~----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~---~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV---HIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcc---cHHHHHHHHHHHcc
Confidence 456666677777654 344555556666555666778 9999999999999998765221 123444443
Q ss_pred ---CCCHHHHHHHHHHHHHHHhc
Q 017441 275 ---NISQDKLKECYLLILELSRG 294 (371)
Q Consensus 275 ---~i~~e~l~~C~~~i~el~~~ 294 (371)
.++.++|.++-..|++.+.-
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f 127 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDA 127 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTT
T ss_pred chhhccHHHHHHHHHHHHHHCCC
Confidence 58999999999988887643
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=86.07 E-value=0.5 Score=45.37 Aligned_cols=87 Identities=6% Similarity=0.050 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHH
Q 017441 200 PISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQD 279 (371)
Q Consensus 200 p~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e 279 (371)
.+.+|..+...++++. .++..+..+...+.....+-+.+.-.||+||||+|.+..+.. .-...+..+++++..
T Consensus 129 a~~~I~~~~~~L~Lp~----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~p---rtl~ei~~~~~v~~k 201 (345)
T 3k7a_M 129 AFAKITMLCDAAELPK----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVA---RTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHTTCCH----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSS---CCHHHHHHSSSCCSH
T ss_pred HHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCC---ccHHHHHHHHCCCHH
Confidence 3456777777787664 344555555555544444567888999999999999865521 234677888999999
Q ss_pred HHHHHHHHHHHHHh
Q 017441 280 KLKECYLLILELSR 293 (371)
Q Consensus 280 ~l~~C~~~i~el~~ 293 (371)
+|.+|++.|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998776
No 25
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.78 E-value=4.4 Score=36.58 Aligned_cols=87 Identities=9% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCH----HHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccch------h-hcc
Q 017441 101 EWVLRVKAHFGFTA----LTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD------L-QVK 169 (371)
Q Consensus 101 ~Wi~~v~~~~~l~~----~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~d------l-~v~ 169 (371)
+++......++.+. .+..+|..+++.-+....+-... ...+|+||+++|+++-...+|.... . ..-
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46677777788776 57778888888876655555555 6779999999999986543332211 1 000
Q ss_pred CCCccccHHHHHHHHHHHHHHcC
Q 017441 170 DPKYVFEAKTIQRMELLVLSTLQ 192 (371)
Q Consensus 170 ~~~~~f~~~~I~~mE~~IL~~L~ 192 (371)
.+ .++..+|...-..|++...
T Consensus 230 ~~--~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQ--DVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SS--SCCHHHHHHHHHHHHTTTS
T ss_pred cc--CCCHHHHHHHHHHHHHHHh
Confidence 11 3478899998888887654
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=82.92 E-value=6.9 Score=35.34 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhc-cCcccCCCCchhHHHHHHHHHHhhcccccCccccch---h-hccCCCccc
Q 017441 101 EWVLRVKAHFGFTALTAILAVNYFDRFIL-SHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLD---L-QVKDPKYVF 175 (371)
Q Consensus 101 ~Wi~~v~~~~~l~~~T~~lAV~ylDRfls-~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~d---l-~v~~~~~~f 175 (371)
.++......++.+..+..+|..++..-+. ..-+-... ...+|+||+++|+++-...+|...+ . ..-+.. +
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~--~ 222 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPT--V 222 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSS--C
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCC--C
Confidence 35556667788888888888888755432 22233344 6779999999999996554443211 1 111222 4
Q ss_pred cHHHHHHHHHHHHHHc
Q 017441 176 EAKTIQRMELLVLSTL 191 (371)
Q Consensus 176 ~~~~I~~mE~~IL~~L 191 (371)
+..+|..+-..|+..+
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7888888888887754
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=81.83 E-value=3 Score=38.70 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcccccCccccchhhccCCCccccHHHH
Q 017441 101 EWVLRVKAHFGFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFEAKTI 180 (371)
Q Consensus 101 ~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl~v~~~~~~f~~~~I 180 (371)
++|.+.+..++.+..+..+|..++..-+....+-... ...+|+||+++|+++.....+ ... .. ..++.++|
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAaiylA~~~~~~~~~---~W~-~~--~~~~~~~l 229 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP---PFMIALACLHVACVVQQKDAR---QWF-AE--LSVDMEKI 229 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC---HHHHHHHHHHHHHHHTTCCCH---HHH-HT--SCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC---HHHHHHHHHHHHHHHcCCChh---hHH-HH--HCCCHHHH
Confidence 4566667777888888999999998866554444445 677999999999998654222 111 11 12356677
Q ss_pred HHHHHHHHHH
Q 017441 181 QRMELLVLST 190 (371)
Q Consensus 181 ~~mE~~IL~~ 190 (371)
...-..|+..
T Consensus 230 ~~~~~~il~l 239 (285)
T 3rgf_B 230 LEIIRVILKL 239 (285)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 28
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=77.37 E-value=38 Score=29.98 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCc---ccCCCCchhHHHHHHHHHHhhcccccCccccchhhccCCCccc
Q 017441 99 VVEWVLRVKAHFGFTALTAILAVNYFDRFILSHS---FQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVF 175 (371)
Q Consensus 99 ~v~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~---v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl~v~~~~~~f 175 (371)
+.+-|+.++.+-+++..++--||-+--.|.-... ..-++ -|-+|+||+.||+----. |..+.++.+-+....
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~-PiplaE~r~lD~sL~- 89 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQ-PLPLAEVRCLDSSLG- 89 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTC-CCCHHHHHHHCTTCC-
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCC-CccHHHHHHHhhhhh-
Confidence 4556788999999999999999999999886532 22335 788999999999864333 445667744344332
Q ss_pred cHHHHHHHHHHHHHHcCc-----cccCCChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHH
Q 017441 176 EAKTIQRMELLVLSTLQW-----RMNPVTPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATAT 250 (371)
Q Consensus 176 ~~~~I~~mE~~IL~~L~w-----~l~~~Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAa 250 (371)
.-++.+. .|+..|+- +|...-.-..|.+|+..+++.- ..+.-.|..++..+-..-....+---.--.-+
T Consensus 90 -Dvelrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~---s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~A 163 (260)
T 3h4c_A 90 -DVELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQV---SLYLPHCKRLLTALGRVEALAGLTVADRVTTA 163 (260)
T ss_dssp -CHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCH---HHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHH
T ss_pred -HHHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccch---hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2233333 35566653 2222233445667777776642 12334566665554333445555544444455
Q ss_pred HHHHHH
Q 017441 251 MLHTIQ 256 (371)
Q Consensus 251 i~~a~~ 256 (371)
+++|+-
T Consensus 164 lLLArT 169 (260)
T 3h4c_A 164 LLLART 169 (260)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666654
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=77.05 E-value=5.7 Score=38.17 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhccCc-ccCCCCchhHHHHHHHHHHhhcccccCccccc---hh-hccCCCccc
Q 017441 101 EWVLRVKAHFGFTALTAILAVNYFDRFILSHS-FQKDKPWMGQLVAVACLSLAAKVDETQVPLLL---DL-QVKDPKYVF 175 (371)
Q Consensus 101 ~Wi~~v~~~~~l~~~T~~lAV~ylDRfls~~~-v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~---dl-~v~~~~~~f 175 (371)
.||......++.+.++..+|.+++..-+.... +-... ...||+||+++|+++-...+|... .. .+-+. .+
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~--~v 229 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDA--TV 229 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCS--SC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhc--cC
Confidence 35566667778888888889888865442222 23344 678999999999999765444321 11 11112 23
Q ss_pred cHHHHHHHHHHHHHHc
Q 017441 176 EAKTIQRMELLVLSTL 191 (371)
Q Consensus 176 ~~~~I~~mE~~IL~~L 191 (371)
+..+|...-..|+..+
T Consensus 230 t~~~l~~i~~~il~~y 245 (358)
T 2pk2_A 230 TLELLDELTHEFLQIL 245 (358)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6788888888877655
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=75.53 E-value=21 Score=32.43 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHH
Q 017441 202 SFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQD 279 (371)
Q Consensus 202 ~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e 279 (371)
+|+......+++.. +.+..+..+++..+....+....+-.+|+||+++|.+.-+... . -...+..++ .++++
T Consensus 43 ~wl~~v~~~~~l~~----~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~-p-~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ----ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYP-P-EIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHTTCCH----HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSC-C-CHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHhCCCH----HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccC-c-cHHHHHHHhcCCCCHH
Confidence 34444445555432 4445555666665555566777888999999999998655321 1 234556666 48999
Q ss_pred HHHHHHHHHHHHHh
Q 017441 280 KLKECYLLILELSR 293 (371)
Q Consensus 280 ~l~~C~~~i~el~~ 293 (371)
+|.++-..|.+.+.
T Consensus 117 eI~~mE~~IL~~L~ 130 (269)
T 2b9r_A 117 QIRQMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99998888877653
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=72.31 E-value=33 Score=31.08 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=45.2
Q ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 224 RCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 224 ~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
.+..+++..+.-..+....+-.+|+||+++|.+.-+... . -.+.+..++ .+++++|.++-..|.+.+.
T Consensus 80 lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p-~-~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 80 LAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIP-L-TAEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSC-C-CHHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCC-C-CHHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 333444444444455567788999999999998655311 1 224455555 4899999999888887664
No 32
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=70.44 E-value=29 Score=32.57 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred HHHHHHHHhC--CCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCC---
Q 017441 203 FFDHIVRRLG--LKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNIS--- 277 (371)
Q Consensus 203 Fl~~fl~~l~--~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~--- 277 (371)
+|..+...++ +. ...+..+..++...+....+..+.|-.||+|||++|.+.-+... -...+...++.+
T Consensus 63 ~I~ev~~~l~~~Lp----~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~---~l~d~v~~~~~~p~~ 135 (323)
T 1jkw_A 63 RLLEFCSVFKPAMP----RSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV---SSPQFVGNLRESPLG 135 (323)
T ss_dssp HHHHHHHHCTTTCC----HHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC---CHHHHGGGSSSCHHH
T ss_pred HHHHHHHHHcCCCC----HHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC---CHHHHHHHhccChhh
Confidence 4445555555 33 24556666677777777778899999999999999998655321 123333334333
Q ss_pred ----HHHHHHHHHHHHHHH
Q 017441 278 ----QDKLKECYLLILELS 292 (371)
Q Consensus 278 ----~e~l~~C~~~i~el~ 292 (371)
.++|..+-..|++.+
T Consensus 136 ~~~~~~~Il~~E~~iL~~L 154 (323)
T 1jkw_A 136 QEKALEQILEYELLLIQQL 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHC
Confidence 466777766666544
No 33
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=70.11 E-value=22 Score=32.04 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=37.8
Q ss_pred hccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 237 RFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 237 ~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
.+.....-.+|+||+++|.+.-+... . -...+..++ .++.++|.++-..|.+.+.
T Consensus 75 ~v~~~~lqlv~~acl~iA~K~ee~~~-~-~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~ 131 (260)
T 2cch_B 75 SVLRGKLQLVGTAAMLLASKFEEIYP-P-EVAEFVYITDDTYTKKQVLRMEHLVLKVLT 131 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSC-C-CHHHHHHHTTSSSCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHhHHHHHHHHHHHHhcccCC-C-CHHHHHHHHcCCcCHHHHHHHHHHHHHHcC
Confidence 34445566789999999998655311 1 234555566 4899999999888887654
No 34
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=66.93 E-value=29 Score=31.20 Aligned_cols=71 Identities=13% Similarity=-0.015 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 221 FLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 221 ~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
.+..+..+++..+.-..+.....-.+|+||+++|.+.-+... . -...+..++ .+++++|.++-..|++.+.
T Consensus 71 tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~-p-~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~ 143 (257)
T 1g3n_C 71 VVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTP-I-STSSLCYAAADSFSRQELIDQEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSC-C-CHHHHHHHTTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccC-C-CHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 334444455554444445555667899999999998644211 1 234555565 4899999999888887664
No 35
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=65.08 E-value=34 Score=30.66 Aligned_cols=87 Identities=10% Similarity=-0.021 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHH
Q 017441 202 SFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQD 279 (371)
Q Consensus 202 ~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e 279 (371)
+|+......+++... .+..+..+++..+.-..+.....-.+|+||+++|.+.-+... . -...+..++ .++++
T Consensus 57 dwl~~v~~~~~l~~e----tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~-p-~~~d~~~~~~~~~~~~ 130 (254)
T 2f2c_A 57 TWMHLLCESFELDKS----VFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKP-M-TVSKLTYLSCDCFTNL 130 (254)
T ss_dssp HHHHHHHHHTTCCTT----HHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSC-C-CHHHHSTTC---CCHH
T ss_pred HHHHHHHHHHCCCch----HHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCC-C-CHHHHHHHhCCCCCHH
Confidence 344444444554432 334455566665555566778888999999999998654221 1 123444444 47899
Q ss_pred HHHHHHHHHHHHHhc
Q 017441 280 KLKECYLLILELSRG 294 (371)
Q Consensus 280 ~l~~C~~~i~el~~~ 294 (371)
+|.++-..|++.+.-
T Consensus 131 ~i~~mE~~IL~~L~~ 145 (254)
T 2f2c_A 131 ELINQEKDILEALKW 145 (254)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCC
Confidence 999988888877653
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=61.01 E-value=46 Score=30.88 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHHHhchhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 227 HLLLSVIADSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 227 ~ll~~~l~d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
.+++..+.-..+....+-.+|+||+++|.+.-+... .. ...+..++ .+++++|.++=..|++.+.
T Consensus 97 ~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p-~~-~~~l~~~~~~~~~~~~i~~mE~~IL~~L~ 163 (306)
T 3g33_B 97 NYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTP-LT-IEKLCIYTDHAVSPRQLRDWEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSC-CC-TTHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCC-CC-HHHHHHHhccCccHHHHHHHHHHHHHHcC
Confidence 333333333445567778899999999998644221 11 23344555 3788999888877776553
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=56.31 E-value=65 Score=29.37 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhch-hhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 223 YRCEHLLLSVIAD-SRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 223 ~~~~~ll~~~l~d-~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
..+..+++..+.- ........-.+|+||+++|.+.-+... . -.+.+..++ .++.++|.++-..|++.+.
T Consensus 72 ~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~-p-~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 72 YLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYP-P-KLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSC-C-CHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCC-C-cHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 3333444443332 234567778899999999998655321 1 234555555 4899999999888887664
No 38
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=52.39 E-value=46 Score=25.67 Aligned_cols=76 Identities=13% Similarity=0.110 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCc------ccCCCCchhHHHHHHHHHHhhcccccCccccchhhccCCCcccc
Q 017441 103 VLRVKAHFGFTALTAILAVNYFDRFILSHS------FQKDKPWMGQLVAVACLSLAAKVDETQVPLLLDLQVKDPKYVFE 176 (371)
Q Consensus 103 i~~v~~~~~l~~~T~~lAV~ylDRfls~~~------v~~~~p~~lqLlavaCL~LAaK~eE~~vp~l~dl~v~~~~~~f~ 176 (371)
|.++|..||+.. ..-.|-.+|++|=.... +.-. -...+++|+|.|+|.--..|+..+=+-. +.- .
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s----~P~f~aaA~~~acr~~K~kVdK~KL~~~--s~l--k 76 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLS----RPLFTSAALLSACKILKLKVDKNKMVAT--SGV--K 76 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTT----SHHHHHHHHHHHHHHTTCCCCHHHHHHT--TCB--C
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhcccccc----ccHHHHHHHHHHHHHHccCCCHHHHHHH--HCC--C
Confidence 457888999765 67788899999976532 1222 3457889999999998877765433322 222 3
Q ss_pred HHHHHHHHHHH
Q 017441 177 AKTIQRMELLV 187 (371)
Q Consensus 177 ~~~I~~mE~~I 187 (371)
+.++.+.+..+
T Consensus 77 ~~~f~~l~~~~ 87 (95)
T 3m03_A 77 KAIFDRLCKQL 87 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=33.87 E-value=2.5e+02 Score=24.94 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=35.1
Q ss_pred hccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHh--CCCHHHHHHHHHHHHHHHh
Q 017441 237 RFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVL--NISQDKLKECYLLILELSR 293 (371)
Q Consensus 237 ~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~--~i~~e~l~~C~~~i~el~~ 293 (371)
.......-.+|++|+++|.+.-+.. ++ -...+..++ .++.++|.+.=..|++.+.
T Consensus 85 ~v~~~~lqLvg~tcl~iAsK~eE~~-p~-~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 85 RIDRENYQSTAAVALHIAGKVRAYM-PI-KATQLAYLCGGATTADKLLTLEVKSLDTLS 141 (252)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHHHCTTCCHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhcC-CC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHCC
Confidence 3444556678999999999865532 11 223444455 4788888887766666553
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=28.31 E-value=1.4e+02 Score=22.89 Aligned_cols=48 Identities=6% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCccchHHHHHHHhCCCHHHHHHHHHHHHHHHh
Q 017441 243 PSTLATATMLHTIQEVEPCNPVEHQNLLMGVLNISQDKLKECYLLILELSR 293 (371)
Q Consensus 243 PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~i~~e~l~~C~~~i~el~~ 293 (371)
--+-++||++.+.+..... .-...|...+|+.+.+....+..+..+..
T Consensus 45 ~P~f~aaA~~~acr~~K~k---VdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 45 RPLFTSAALLSACKILKLK---VDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp SHHHHHHHHHHHHHHTTCC---CCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHccC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3355778888888876532 13468899999999999999999888764
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=22.72 E-value=2.6e+02 Score=22.87 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcc--cccCccccchhh
Q 017441 98 EVVEWVLRVKAHF--------GFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV--DETQVPLLLDLQ 167 (371)
Q Consensus 98 ~~v~Wi~~v~~~~--------~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~--eE~~vp~l~dl~ 167 (371)
++|-|+..|-+.+ +|=..+-..-|+++=|=.-...+.. ...+|-+..|||+||=-+ .|+-.|.-.- .
T Consensus 29 ~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~s--e~eLqa~~lTCLYlsYSYmGNEISYPLKPF-l 105 (149)
T 3o0g_D 29 DPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYPLKPF-L 105 (149)
T ss_dssp HHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCCS--HHHHHHHHHHHHHHHHHHHCSSSCCCSGGG-C
T ss_pred hhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHHhcccccccCcch-h
Confidence 6788888887653 3322222222344444333333333 334999999999999887 6765665443 3
Q ss_pred ccCCC
Q 017441 168 VKDPK 172 (371)
Q Consensus 168 v~~~~ 172 (371)
|..++
T Consensus 106 v~~~k 110 (149)
T 3o0g_D 106 VESCK 110 (149)
T ss_dssp CCSCH
T ss_pred hcccH
Confidence 54443
No 42
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=22.01 E-value=4.7e+02 Score=24.10 Aligned_cols=88 Identities=8% Similarity=-0.024 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhc---hhhccCCcHHHHHHHHHHHHHHhcCCCCccchHHHHHHHhC
Q 017441 199 TPISFFDHIVRRLGLKTHLHWEFLYRCEHLLLSVIA---DSRFMCYLPSTLATATMLHTIQEVEPCNPVEHQNLLMGVLN 275 (371)
Q Consensus 199 Tp~~Fl~~fl~~l~~~~~~~~~~l~~~~~ll~~~l~---d~~fl~~~PS~IAaAai~~a~~~l~~~~~~~~~~~L~~~~~ 275 (371)
+-..|+..+++...... ..+-.+..++..... ..........-+-++|+.+|.+.+.... -+...|.++.|
T Consensus 76 SI~~Yl~RI~k~t~ls~----~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~--ysN~~wAkVgG 149 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEH----CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSF--STNAHYAKVGG 149 (293)
T ss_dssp CHHHHHHHHHHTTTCCH----HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSC--CCHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccc--cChhHhhhccC
Confidence 44667777666555432 222222223333222 2233456677888999999999887432 35677888899
Q ss_pred CCHHHHHHHHHHHHHHH
Q 017441 276 ISQDKLKECYLLILELS 292 (371)
Q Consensus 276 i~~e~l~~C~~~i~el~ 292 (371)
++.+++...=..++.++
T Consensus 150 isl~ELN~LE~eFL~lL 166 (293)
T 2pmi_B 150 VRCHELNILENDFLKRV 166 (293)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHc
Confidence 99988877665555544
No 43
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=20.41 E-value=4.1e+02 Score=22.77 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHhccCcccCCCCchhHHHHHHHHHHhhcc--cccCccccchhh
Q 017441 98 EVVEWVLRVKAHF--------GFTALTAILAVNYFDRFILSHSFQKDKPWMGQLVAVACLSLAAKV--DETQVPLLLDLQ 167 (371)
Q Consensus 98 ~~v~Wi~~v~~~~--------~l~~~T~~lAV~ylDRfls~~~v~~~~p~~lqLlavaCL~LAaK~--eE~~vp~l~dl~ 167 (371)
++|-|+..|-+.+ +|=..+-..-|+++-|=+-...+.. ...+|-+.+|||+||--+ .|+-.|.-. +.
T Consensus 74 d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~~~t--e~eLqa~vLTCLYlsYSYmGNEISYPLKP-Fl 150 (208)
T 1unl_D 74 DPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYPLKP-FL 150 (208)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTTCCC--HHHHHHHHHHHHHHHHHHHCSSSCCCSGG-GC
T ss_pred ceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHhhCccccccCcc-ee
Confidence 5788888887654 2322222223344444333333333 234999999999999888 676566543 34
Q ss_pred ccCCCccc
Q 017441 168 VKDPKYVF 175 (371)
Q Consensus 168 v~~~~~~f 175 (371)
|..++-.|
T Consensus 151 ve~~ke~F 158 (208)
T 1unl_D 151 VESCKEAF 158 (208)
T ss_dssp CSSCHHHH
T ss_pred ecCCHHHH
Confidence 55544333
Done!