BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017442
         (371 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1STZ|A Chain A, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
 pdb|1STZ|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
 pdb|1STZ|C Chain C, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
          Length = 338

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 234 GTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAG----GEKTT 289
           G  FY  EM KI    + A  A    +    A P+ +   A N+++RL  G        T
Sbjct: 83  GLRFYYEEMLKISKETSEADLAVETFKSMPLADPEKVLFLAGNLLARLTEGYVLIERPNT 142

Query: 290 QALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLN 349
           + LK L  R   I V E+ +I   SI  +  V   T I+T       R   E   ERQLN
Sbjct: 143 RDLKIL--RVMLIPVSEDYLIF--SILTEFGVSKVTPIKT-----QERLNWE-EIERQLN 192

Query: 350 DLLFPR 355
            LL  R
Sbjct: 193 FLLRGR 198


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,862,324
Number of Sequences: 62578
Number of extensions: 370001
Number of successful extensions: 748
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 2
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)