BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017442
         (371 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0WMN5|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana
           GN=At3g49140 PE=1 SV=2
          Length = 499

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/380 (49%), Positives = 263/380 (69%), Gaps = 34/380 (8%)

Query: 1   MFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTE 60
           M T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+ SENN+VQVI+GFDT E
Sbjct: 135 MLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSVTSENNYVQVIVGFDTME 194

Query: 61  MIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEM 120
           MIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ +E WV +LEDED++D+ 
Sbjct: 195 MIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDEDEEEWVAILEDEDEDDDD 246

Query: 121 ----------------LGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQ 164
                           LGDWA LETMRS HPM+FAK+++EV S+DP+DWM+QP AG+ IQ
Sbjct: 247 DDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVASNDPVDWMDQPSAGLAIQ 306

Query: 165 GLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSE- 223
           GLL   L+E++SDIQ+  + +         N     N++  ++++   + S+   + SE 
Sbjct: 307 GLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENLVDKLEDNSKAGGDESEI 357

Query: 224 ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKA 283
           +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQPD IAH++A IISRL+ 
Sbjct: 358 DSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQPDAIAHASAEIISRLEE 417

Query: 284 GGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYS 343
            G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +I++LRFAF+TRATSE +
Sbjct: 418 SGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAKIESLRFAFSTRATSEEN 477

Query: 344 AERQLNDLLFPRIHQKPQKR 363
           AE Q+  LLFP+ +Q  Q +
Sbjct: 478 AEGQIRKLLFPKTNQSTQPK 497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.132    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,196,876
Number of Sequences: 539616
Number of extensions: 6915182
Number of successful extensions: 119886
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 721
Number of HSP's that attempted gapping in prelim test: 64634
Number of HSP's gapped (non-prelim): 25892
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)