Query 017442
Match_columns 371
No_of_seqs 146 out of 351
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017442.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017442hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10615 DUF2470: Protein of u 99.7 3.1E-18 6.6E-23 137.6 7.6 80 267-352 2-83 (83)
2 PF13883 Pyrid_oxidase_2: Pyri 99.4 6.9E-13 1.5E-17 119.8 6.1 76 151-263 91-169 (170)
3 COG0748 HugZ Putative heme iro 99.3 5E-13 1.1E-17 127.6 2.2 171 145-358 67-242 (245)
4 PRK03467 hypothetical protein; 93.9 0.15 3.3E-06 46.0 6.1 69 145-256 69-141 (144)
5 COG0748 HugZ Putative heme iro 93.0 0.1 2.2E-06 50.8 3.9 68 276-350 2-69 (245)
6 PF10446 DUF2457: Protein of u 81.4 1.1 2.3E-05 47.2 2.6 26 108-133 109-134 (458)
7 PF10446 DUF2457: Protein of u 72.5 1.8 4E-05 45.5 1.4 15 53-68 25-39 (458)
8 KOG3374 Cellular repressor of 57.1 26 0.00057 33.2 5.7 75 153-264 131-207 (210)
9 PF04931 DNA_pol_phi: DNA poly 51.3 9.7 0.00021 42.4 2.2 10 138-147 704-713 (784)
10 PF05071 NDUFA12: NADH ubiquin 47.8 11 0.00024 31.9 1.6 12 23-34 6-17 (105)
11 PF05285 SDA1: SDA1; InterPro 40.6 27 0.00059 35.1 3.3 16 99-114 110-125 (324)
12 PTZ00415 transmission-blocking 37.7 20 0.00043 44.0 2.0 18 153-170 281-298 (2849)
13 KOG3130 Uncharacterized conser 36.4 19 0.00041 38.0 1.4 30 310-342 444-473 (514)
14 KOG0943 Predicted ubiquitin-pr 34.9 23 0.00049 42.3 1.9 45 276-321 1881-1931(3015)
15 PLN03095 NADH:ubiquinone oxido 34.8 22 0.00048 31.2 1.4 13 23-35 15-27 (115)
16 KOG1832 HIV-1 Vpr-binding prot 30.7 68 0.0015 37.4 4.6 41 24-65 1348-1388(1516)
17 cd06403 PB1_Par6 The PB1 domai 29.4 65 0.0014 26.8 3.2 37 17-54 38-77 (80)
18 PF06970 RepA_N: Replication i 28.6 28 0.00061 28.0 1.0 21 22-43 42-62 (76)
19 PF03115 Astro_capsid: Astrovi 27.4 20 0.00044 40.5 0.0 10 175-184 740-749 (787)
20 PLN02732 Probable NADH dehydro 26.3 36 0.00079 31.5 1.4 13 23-35 54-66 (159)
21 PRK08183 NADH dehydrogenase; V 26.2 38 0.00083 30.4 1.5 14 23-36 31-44 (133)
22 PRK06630 hypothetical protein; 25.0 28 0.0006 30.0 0.3 13 23-35 18-30 (99)
23 PRK09702 PTS system arbutin-sp 21.5 1.3E+02 0.0027 27.7 4.0 21 47-67 124-144 (161)
24 PF03066 Nucleoplasmin: Nucleo 21.4 52 0.0011 29.7 1.4 46 43-102 92-141 (149)
25 KOG1189 Global transcriptional 20.7 69 0.0015 36.5 2.4 11 119-129 928-938 (960)
26 TIGR03618 Rv1155_F420 PPOX cla 20.4 4.6E+02 0.01 21.1 7.1 27 159-185 59-86 (117)
No 1
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known. ; PDB: 3GAS_D 3SWJ_A 2ARZ_B.
Probab=99.75 E-value=3.1e-18 Score=137.62 Aligned_cols=80 Identities=28% Similarity=0.386 Sum_probs=64.9
Q ss_pred Cchhhh-hhHHHHHHHhcCCcchHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHH
Q 017442 267 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA 344 (371)
Q Consensus 267 PDpLA~-~Ea~II~HMN~DHada~~AL~~la~~~~g~-~v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~da 344 (371)
|||+++ .+++||+|||+||+++ |.+||+++.++ .+.+|+|++||++||+|++ .+.+.+||||++|+++++++
T Consensus 2 ~dp~~~~~~~~ii~HMN~DH~d~---l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~ 75 (83)
T PF10615_consen 2 PDPLAPEAAARIIEHMNDDHADD---LLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEA 75 (83)
T ss_dssp --TTTTHHHHHHHHHHHHH-HHH---HHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCH
T ss_pred cCcccHHHHHHHHHHHHHhHHHH---HHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHH
Confidence 789985 9999999999999998 99999998888 4689999999999999999 24589999999999999999
Q ss_pred HHHHHHhc
Q 017442 345 ERQLNDLL 352 (371)
Q Consensus 345 rkaLv~LL 352 (371)
|++|++|.
T Consensus 76 r~~lV~ma 83 (83)
T PF10615_consen 76 RDALVEMA 83 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999983
No 2
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=99.37 E-value=6.9e-13 Score=119.77 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=57.6
Q ss_pred ccccCCCCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCC
Q 017442 151 IDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDK 230 (371)
Q Consensus 151 ~~~m~~p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~ 230 (371)
.+.|+...+||||+|.++++..+|...+|++|+.+++.+.. +.
T Consensus 91 ~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~-------------------------------------w~ 133 (170)
T PF13883_consen 91 VDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKH-------------------------------------WL 133 (170)
T ss_dssp --TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGG-------------------------------------S-
T ss_pred CCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccc-------------------------------------cc
Confidence 45677788999999999999877777899999999888776 35
Q ss_pred CC---CCeEEEEEEEeEEEEEcCCccccccCHhhhh
Q 017442 231 PM---NGTSFYKLEMTKIQPILAHAHQAAVDIEDYR 263 (371)
Q Consensus 231 ~~---~DFsFYRLe~~rVrlIGGFGra~wV~~eDy~ 263 (371)
++ |||.||||++++|+||||||+++||++++|.
T Consensus 134 ~~~~~hdf~~~rl~i~~v~~vgGFG~~~~i~~~~Y~ 169 (170)
T PF13883_consen 134 PFNSPHDFFFYRLEIERVYLVGGFGGAAWISAEEYY 169 (170)
T ss_dssp GG---G--EEEEEEEEEEEEE-SSSS-EEE-HHHHH
T ss_pred cccccCccEEEEEEEEEEEEECccCCceEeCHHHhc
Confidence 55 9999999999999999999999999999996
No 3
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=99.32 E-value=5e-13 Score=127.57 Aligned_cols=171 Identities=11% Similarity=0.001 Sum_probs=130.8
Q ss_pred HhcCCcccccCCCCCeeeEEEEeeeccccc--chHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCC
Q 017442 145 VISDDPIDWMEQPPAGITIQGLLRPALIEE--HSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGS 222 (371)
Q Consensus 145 ~~~~~~~~~m~~p~arlti~G~~rpa~~ee--~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~ 222 (371)
.+...+...=.+--+|||++|.+.....++ .+.+|++++.+.|.+..
T Consensus 67 il~~~~g~~d~~~~~Rl~~e~~afr~~~~sv~lat~~~~g~~~~syAp~------------------------------- 115 (245)
T COG0748 67 ILLGEPGKGDELALPRLTLEIEAFRLEFDSVALATLRERGLPRASYAPL------------------------------- 115 (245)
T ss_pred heecCcCcCChhhccchhHHHHHHHhccchHHHhhhhhcCCcCCCcCce-------------------------------
Confidence 456677777778888999999988875332 33468888888666555
Q ss_pred cccccCCCCCCCeEEEEEEEeEEEEEcCCcc-ccccCHhhhhccCCchhhhhhHHHHHHHhcCCcchHHHHHHHHHHhcC
Q 017442 223 EESKKDDKPMNGTSFYKLEMTKIQPILAHAH-QAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKG 301 (371)
Q Consensus 223 ~~~~~~~~~~~DFsFYRLe~~rVrlIGGFGr-a~wV~~eDy~aA~PDpLA~~Ea~II~HMN~DHada~~AL~~la~~~~g 301 (371)
+.+.+||.+|++++.+...++|+++ ...+-.+|... .-.+..+.+++.|||++|.++ +..|++.+.+
T Consensus 116 ------~~~~~d~~iyis~~arh~~N~~~~p~vs~m~iedea~---a~s~~~r~rl~~hmnAd~~ea---i~~yaqv~~~ 183 (245)
T COG0748 116 ------YVDDGDYYIYISEIARHARNLGFNPKVSVMFIEDEAK---AKSAFARKRLREHMNADHAEA---IAEYAQVLAQ 183 (245)
T ss_pred ------EecCCceEEEEehHHHHhhccCcCCchhhheecCchh---hhhHHHHHHHHHHhhhHHHHH---HHHHHHHHHH
Confidence 5788899999999999999999998 22222222111 223667789999999999877 8999988766
Q ss_pred CCCCc-eEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcCc-cccC
Q 017442 302 IQVEE-EAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP-RIHQ 358 (371)
Q Consensus 302 ~~v~~-armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~p-~~~~ 358 (371)
+.... .+|.|||+.|+++.+....+...+|+.|+++.....+.+.+|++|... |...
T Consensus 184 ~~e~~~~~I~~Id~~gdfll~~l~~~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~h~~~ 242 (245)
T COG0748 184 LAEATGGRIKGIDAMGDFLLFQLTPGQGLFVKGFGQAYAISGDGRIALVGLAGGPHGFA 242 (245)
T ss_pred HhhhhcchhhcccccccceeeeccCCCceEEeccchhhccccchhHHHHHHhcCccccc
Confidence 54333 449999999999998644455799999999999999999999999853 5443
No 4
>PRK03467 hypothetical protein; Provisional
Probab=93.87 E-value=0.15 Score=45.98 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=53.0
Q ss_pred HhcCCcccccCCCCCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcc
Q 017442 145 VISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEE 224 (371)
Q Consensus 145 ~~~~~~~~~m~~p~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~ 224 (371)
.|..+|-.|.. =.||-+.|.++++..+|+...|++|..++|-+..
T Consensus 69 TI~~~~~~v~~--I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A~~--------------------------------- 113 (144)
T PRK03467 69 TVNGQPKTVAL--IRGVQFKGEIRRLEGEESDAARKRYNRRFPVARA--------------------------------- 113 (144)
T ss_pred EEcCCCcchhh--ceEEEEEEEEEecChhHHHHHHHHHHHhCcchhc---------------------------------
Confidence 34455555554 2588899999999877777789999999776655
Q ss_pred cccCCCCCCCeEEEEEEEeEEEEEc---CCcc-ccc
Q 017442 225 SKKDDKPMNGTSFYKLEMTKIQPIL---AHAH-QAA 256 (371)
Q Consensus 225 ~~~~~~~~~DFsFYRLe~~rVrlIG---GFGr-a~w 256 (371)
. ...+|+|++..|.|++ |||+ ..|
T Consensus 114 -----~---~~~iw~l~l~~iK~tdN~LGFgkKl~w 141 (144)
T PRK03467 114 -----L---SAPVWELRLDEIKMTDNTLGFGKKLHW 141 (144)
T ss_pred -----c---CCceEEEEEEEEEEeccccccccceEE
Confidence 1 2358999999999999 9995 455
No 5
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=93.03 E-value=0.1 Score=50.80 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHH
Q 017442 276 NIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLND 350 (371)
Q Consensus 276 ~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~ 350 (371)
++++|||+.|-.. +..+|....+....++-+.+||..|+|+- |....++|.-|+..+ .+.+.|-.|--
T Consensus 2 ~~ea~~na~~~l~---~~~~~~l~~~~~~~g~p~~sv~~~gid~~---g~p~~~~~~~~~h~~-~~~d~r~sil~ 69 (245)
T COG0748 2 DIEAHMNARHLLR---SARLAALAGLEPVTGVPFVSVVPVGIDID---GNPLILLSRLFPHTA-DEADPRCSILL 69 (245)
T ss_pred cHHHHHHHHHHHH---HHHHHHHhcCCCCCCCceeeeccceeccC---CCcceeEeeeccccc-cccChhhhhee
Confidence 5789999999876 77888755555668899999999999993 455689999999998 88887766643
No 6
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=81.42 E-value=1.1 Score=47.19 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=13.4
Q ss_pred eeccCCccccccccCccccccccccc
Q 017442 108 VNVLEDEDDEDEMLGDWAKLETMRSS 133 (371)
Q Consensus 108 ~~~~~~~~~~~~~~~~w~~~~t~~~~ 133 (371)
|+.-|||++++..+.=|+---|....
T Consensus 109 FAdSDDEdD~~sd~~~WtP~~~t~~~ 134 (458)
T PF10446_consen 109 FADSDDEDDDGSDYEFWTPGATTAAT 134 (458)
T ss_pred cccccccccccccceeeccccccccc
Confidence 33333333344678888765544333
No 7
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=72.46 E-value=1.8 Score=45.47 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.5
Q ss_pred EEecchhHHHHHhhhc
Q 017442 53 IIGFDTTEMIKEMELA 68 (371)
Q Consensus 53 ~ig~d~~~~~~~~~~~ 68 (371)
-|=++-. |-+|+.+.
T Consensus 25 KlTi~Dt-lkKE~~IR 39 (458)
T PF10446_consen 25 KLTINDT-LKKENAIR 39 (458)
T ss_pred cccHHHH-HHHHHHHh
Confidence 3445544 55665543
No 8
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=57.13 E-value=26 Score=33.21 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=54.6
Q ss_pred ccCCCCCeeeEEEEeeecccccchHHH--HHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCC
Q 017442 153 WMEQPPAGITIQGLLRPALIEEHSDIQ--RHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDK 230 (371)
Q Consensus 153 ~m~~p~arlti~G~~rpa~~ee~s~ir--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~ 230 (371)
=|+---++++|.|++.-+-.-+.++-. .-+..+++..-. .+
T Consensus 131 Pm~PtC~~~mlsG~v~k~~~~~~~~~~~~~alf~rHPem~~-------------------------------------w~ 173 (210)
T KOG3374|consen 131 PMEPTCARSMLSGQVKKMDPSDKSYQPSLDALFRRHPEMIN-------------------------------------WV 173 (210)
T ss_pred CCCchhhhheecceEEEeCCcchhhhhhhhhHhhcCHhHcC-------------------------------------Cc
Confidence 366667899999999888644444421 223333343333 35
Q ss_pred CCCCeEEEEEEEeEEEEEcCCccccccCHhhhhc
Q 017442 231 PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRK 264 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIGGFGra~wV~~eDy~a 264 (371)
..|.|-|-.|++..|....=||.-+.|+++||-+
T Consensus 174 ~~hn~~~~~l~isni~vld~~ggp~~vs~~~yy~ 207 (210)
T KOG3374|consen 174 KAHNFYLCELEISNIFVLDFYGGPHKVSASDYYA 207 (210)
T ss_pred cccceEEEEEeeeeEEEEEecCCCcccCHHHhcc
Confidence 6789999999999999999999999999999864
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=51.28 E-value=9.7 Score=42.41 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.9
Q ss_pred HHHHHHHHhc
Q 017442 138 FAKKLSEVIS 147 (371)
Q Consensus 138 fak~l~~~~~ 147 (371)
|-.+|++|..
T Consensus 704 ~~~~l~~aL~ 713 (784)
T PF04931_consen 704 FRSALAKALG 713 (784)
T ss_pred HHHHHHHHhc
Confidence 5556666544
No 10
>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane
Probab=47.85 E-value=11 Score=31.94 Aligned_cols=12 Identities=50% Similarity=0.694 Sum_probs=11.3
Q ss_pred eccCCCEEEEec
Q 017442 23 TDEHGNIYIQVK 34 (371)
Q Consensus 23 ~d~~g~i~f~v~ 34 (371)
+|.+||.|||.+
T Consensus 6 ~D~~GN~YyE~~ 17 (105)
T PF05071_consen 6 TDEFGNKYYENP 17 (105)
T ss_pred EeCCCCEEEeec
Confidence 699999999998
No 11
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=40.64 E-value=27 Score=35.09 Aligned_cols=16 Identities=38% Similarity=0.852 Sum_probs=11.0
Q ss_pred ccccccccceeccCCc
Q 017442 99 EDEDYDENWVNVLEDE 114 (371)
Q Consensus 99 ~~~d~~~~~~~~~~~~ 114 (371)
+++|.+++|++|-+|+
T Consensus 110 ~d~Dd~~e~idv~~d~ 125 (324)
T PF05285_consen 110 DDSDDEGEWIDVESDE 125 (324)
T ss_pred ccccccCCcccccchh
Confidence 3444468899888884
No 12
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=37.66 E-value=20 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.1
Q ss_pred ccCCCCCeeeEEEEeeec
Q 017442 153 WMEQPPAGITIQGLLRPA 170 (371)
Q Consensus 153 ~m~~p~arlti~G~~rpa 170 (371)
+...|-+.|-|.|-..-+
T Consensus 281 ki~~p~~~v~iicp~k~~ 298 (2849)
T PTZ00415 281 KINEPLIKVKIICPLKGA 298 (2849)
T ss_pred EcccccceeEEEccCCCc
Confidence 456777778777765544
No 13
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.37 E-value=19 Score=38.02 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=15.4
Q ss_pred EeecCCCceEEEeeCCcceEEEEecCCCCCCHH
Q 017442 310 IGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEY 342 (371)
Q Consensus 310 iGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~ 342 (371)
+.++|+-+.-....| +.+|=.|..|-.++.
T Consensus 444 t~l~P~~V~~e~k~g---~~i~~~~~~~~~t~~ 473 (514)
T KOG3130|consen 444 TKLLPLSVTPEAKSG---TVIEKEFVSPSLTPP 473 (514)
T ss_pred cccCCCccccccccc---hhhhhhccCCCCCCc
Confidence 445555544443333 455566666655554
No 14
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=23 Score=42.35 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHhcC-CcchHHHHHHHHHHhcCC-----CCCceEEEeecCCCceEEE
Q 017442 276 NIISRLKAG-GEKTTQALKSLCWRTKGI-----QVEEEAVIGVDSIGFDLRV 321 (371)
Q Consensus 276 ~II~HMN~D-Hada~~AL~~la~~~~g~-----~v~~armiGVDr~GfDLRv 321 (371)
.+..-+|+. |+++ +||.++|.+.... .+..+++.-+|+|-|--|.
T Consensus 1881 ~imAsiaaqsaaRa-ralealaarr~aaasrtP~aS~~~ierf~Pyrfssrs 1931 (3015)
T KOG0943|consen 1881 MIMASIAAQSAARA-RALEALAARRAAAASRTPAASSAGIERFDPYRFSSRS 1931 (3015)
T ss_pred hHHHHHhhHHHHHH-HHHHHHHhhccccccCCCcccCCCeeeeccccccchh
Confidence 455666666 5554 7788888653222 2345889999999887654
No 15
>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional
Probab=34.81 E-value=22 Score=31.22 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.5
Q ss_pred eccCCCEEEEecC
Q 017442 23 TDEHGNIYIQVKN 35 (371)
Q Consensus 23 ~d~~g~i~f~v~~ 35 (371)
+|++||.|||.++
T Consensus 15 ~D~~GNkYYE~~~ 27 (115)
T PLN03095 15 EDEFGNKYYENPS 27 (115)
T ss_pred EcCCCCeeeEcCC
Confidence 6999999999874
No 16
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.72 E-value=68 Score=37.44 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=20.4
Q ss_pred ccCCCEEEEecCchhHhhhhccCCCceEEEEecchhHHHHHh
Q 017442 24 DEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEM 65 (371)
Q Consensus 24 d~~g~i~f~v~~~~~il~~~~~~~n~v~v~ig~d~~~~~~~~ 65 (371)
=+|-+|- .++=+-+||.=+++...-.-.+|-|-.++|.-.|
T Consensus 1348 ~dYs~ia-Ti~v~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~ 1388 (1516)
T KOG1832|consen 1348 IDYSDIA-TIPVDRCLLDLCTEPTDSFLGVIEMEDQEDMDQF 1388 (1516)
T ss_pred cccccce-eeecccchhhhhcCCccceEEEEeccChhhhhhh
Confidence 3444442 2333455666555554444555666555454333
No 17
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=29.39 E-value=65 Score=26.78 Aligned_cols=37 Identities=30% Similarity=0.795 Sum_probs=29.9
Q ss_pred CCCCee---eccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 017442 17 PDLPYV---TDEHGNIYIQVKNEEDILQSLISENNFVQVII 54 (371)
Q Consensus 17 ~e~~y~---~d~~g~i~f~v~~~~~il~~~~~~~n~v~v~i 54 (371)
+.++|+ ||.|||+ .-|+||+|+...+++++-.+.++|
T Consensus 38 ~~~~f~i~Y~D~~gDL-LPInNDdNf~kAlssa~plLRl~i 77 (80)
T cd06403 38 PNVDFLIGYTDPHGDL-LPINNDDNFLKALSSANPLLRIFI 77 (80)
T ss_pred CCCcEEEEEeCCCCCE-ecccCcHHHHHHHHcCCCceEEEE
Confidence 346665 6999997 689999999999998866667776
No 18
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=28.64 E-value=28 Score=28.05 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=15.7
Q ss_pred eeccCCCEEEEecCchhHhhhh
Q 017442 22 VTDEHGNIYIQVKNEEDILQSL 43 (371)
Q Consensus 22 ~~d~~g~i~f~v~~~~~il~~~ 43 (371)
-+|++|+|||.-++ +++++.+
T Consensus 42 wiDe~G~vYi~~s~-eel~~~L 62 (76)
T PF06970_consen 42 WIDENGNVYIIFSI-EELMELL 62 (76)
T ss_pred cCCCCCCEEEEeeH-HHHHHHH
Confidence 38999999997665 5566654
No 19
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=27.42 E-value=20 Score=40.46 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=0.0
Q ss_pred chHHHHHhhc
Q 017442 175 HSDIQRHRSS 184 (371)
Q Consensus 175 ~s~ir~~~~~ 184 (371)
+...|..|+.
T Consensus 740 ek~~r~vy~d 749 (787)
T PF03115_consen 740 EKERRNVYMD 749 (787)
T ss_dssp ----------
T ss_pred hhhhhhhHHh
Confidence 3344555543
No 20
>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
Probab=26.26 E-value=36 Score=31.47 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=11.8
Q ss_pred eccCCCEEEEecC
Q 017442 23 TDEHGNIYIQVKN 35 (371)
Q Consensus 23 ~d~~g~i~f~v~~ 35 (371)
+|++||.|||.++
T Consensus 54 ~D~~GNkYYE~~~ 66 (159)
T PLN02732 54 VDKFGNKYYQKLG 66 (159)
T ss_pred ecCCCCeeeecCC
Confidence 6999999999876
No 21
>PRK08183 NADH dehydrogenase; Validated
Probab=26.19 E-value=38 Score=30.40 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=12.4
Q ss_pred eccCCCEEEEecCc
Q 017442 23 TDEHGNIYIQVKNE 36 (371)
Q Consensus 23 ~d~~g~i~f~v~~~ 36 (371)
+|.+||.|||.++.
T Consensus 31 ~D~~GNkYYE~~~~ 44 (133)
T PRK08183 31 EDEFGNVYYRTKGG 44 (133)
T ss_pred ecCCCCeeeecCCc
Confidence 69999999998864
No 22
>PRK06630 hypothetical protein; Provisional
Probab=25.03 E-value=28 Score=29.97 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=11.0
Q ss_pred eccCCCEEEEecC
Q 017442 23 TDEHGNIYIQVKN 35 (371)
Q Consensus 23 ~d~~g~i~f~v~~ 35 (371)
+|++||.|||-.+
T Consensus 18 ~D~~GNkYYE~~~ 30 (99)
T PRK06630 18 EDEFLNQYYESRN 30 (99)
T ss_pred EeCCCChhcccCC
Confidence 6999999999553
No 23
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=21.51 E-value=1.3e+02 Score=27.74 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=17.2
Q ss_pred CCceEEEEecchhHHHHHhhh
Q 017442 47 NNFVQVIIGFDTTEMIKEMEL 67 (371)
Q Consensus 47 ~n~v~v~ig~d~~~~~~~~~~ 67 (371)
+|-||||||.+...+..+|+-
T Consensus 124 g~~vQIIiG~~v~~i~~~i~~ 144 (161)
T PRK09702 124 GDAIQVIIGLHVSQLREQLDS 144 (161)
T ss_pred CCeEEEEECCCHHHHHHHHHH
Confidence 356899999999988888753
No 24
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=21.39 E-value=52 Score=29.73 Aligned_cols=46 Identities=39% Similarity=0.627 Sum_probs=0.0
Q ss_pred hccCCCce----EEEEecchhHHHHHhhhcCCcccccccccCCCCCCCCCCCCCCccCcccccc
Q 017442 43 LISENNFV----QVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDED 102 (371)
Q Consensus 43 ~~~~~n~v----~v~ig~d~~~~~~~~~~~~~~~~d~~~~~~~~ed~d~~~~~~~d~~~~~~~d 102 (371)
|...+.|| |-++++.--....+ +.+++++|++++++|++++.+.++
T Consensus 92 L~~GsGPVhisG~~~~~~~~d~~~~e--------------~d~ee~~dee~deeddeeee~~ee 141 (149)
T PF03066_consen 92 LKCGSGPVHISGQHLVAMEEDEESEE--------------EDDEEDEDEEDDEEDDEEEEEEEE 141 (149)
T ss_dssp EEESSS-EEEEEEEEEE-----------------------------------------------
T ss_pred EEecCCCEEeeCcccccccccccccc--------------cchhhhcccccccccccccccccc
No 25
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=20.74 E-value=69 Score=36.53 Aligned_cols=11 Identities=45% Similarity=0.725 Sum_probs=7.6
Q ss_pred cccCccccccc
Q 017442 119 EMLGDWAKLET 129 (371)
Q Consensus 119 ~~~~~w~~~~t 129 (371)
|.--+|.-+|-
T Consensus 928 E~gkdwdele~ 938 (960)
T KOG1189|consen 928 ESGKDWDELER 938 (960)
T ss_pred hhccchhhhHH
Confidence 55668888763
No 26
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=20.45 E-value=4.6e+02 Score=21.10 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=17.3
Q ss_pred CeeeEEEEeeeccccc-chHHHHHhhcC
Q 017442 159 AGITIQGLLRPALIEE-HSDIQRHRSSN 185 (371)
Q Consensus 159 arlti~G~~rpa~~ee-~s~ir~~~~~~ 185 (371)
.+++|+|.++.+..++ ...+.+++..+
T Consensus 59 ~~v~i~G~a~~v~d~~~~~~~~~~l~~~ 86 (117)
T TIGR03618 59 RYVEVEGTAELVEDPDPVRDLVDRLAER 86 (117)
T ss_pred cEEEEEEEEEEecCCcccHHHHHHHHHH
Confidence 6899999999996432 23444444443
Done!