Query 017442
Match_columns 371
No_of_seqs 146 out of 351
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 14:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017442.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017442hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnh_A Uncharacterized protein 100.0 1.7E-30 5.8E-35 244.8 13.3 147 158-353 104-253 (258)
2 2arz_A Hypothetical protein PA 100.0 9.1E-30 3.1E-34 235.1 14.9 151 158-354 85-236 (247)
3 3gas_A Heme oxygenase; FMN-bin 99.5 4.4E-14 1.5E-18 134.0 8.5 73 275-353 3-76 (259)
4 3swj_A CHUZ, putative uncharac 99.5 6.8E-14 2.3E-18 131.7 7.7 72 275-353 4-76 (251)
5 1xhn_A CREG, cellular represso 99.0 5.5E-10 1.9E-14 99.2 6.7 73 158-267 111-183 (184)
6 3gas_A Heme oxygenase; FMN-bin 98.8 7.5E-10 2.6E-14 105.0 2.8 75 158-266 164-239 (259)
7 3swj_A CHUZ, putative uncharac 98.8 3E-09 1E-13 100.1 3.7 74 159-266 165-239 (251)
8 3tgv_A Heme-binding protein HU 98.3 1.4E-07 4.8E-12 81.3 2.3 60 158-254 79-141 (148)
9 1vl7_A Hypothetical protein AL 97.4 4.3E-05 1.5E-09 65.5 1.8 59 158-253 96-157 (157)
10 2hq7_A Protein, related to gen 86.3 0.89 3E-05 37.1 4.9 23 232-254 114-136 (146)
11 2fhq_A Putative general stress 81.6 3.5 0.00012 33.3 6.6 22 232-254 114-135 (141)
12 3ec6_A General stress protein 75.4 6.5 0.00022 32.0 6.5 22 231-252 109-130 (139)
13 2i02_A General stress protein 64.1 12 0.00041 30.5 5.7 20 232-251 119-138 (148)
14 3db0_A LIN2891 protein; putati 63.5 13 0.00046 29.4 5.8 19 231-249 109-127 (128)
15 2asf_A Hypothetical protein RV 63.4 14 0.00047 30.0 5.9 56 157-252 78-134 (137)
16 2iab_A Hypothetical protein; N 56.3 20 0.00068 30.0 5.8 20 233-252 119-138 (155)
17 3f7e_A Pyridoxamine 5'-phospha 53.1 30 0.001 27.6 6.2 18 156-173 72-89 (131)
18 2re7_A Uncharacterized protein 40.5 27 0.00093 27.7 4.0 19 232-250 115-133 (134)
19 2ig6_A NIMC/NIMA family protei 29.7 1.4E+02 0.0049 24.7 7.0 22 231-252 122-143 (150)
20 1wmh_B Partitioning defective- 28.8 57 0.0019 26.1 4.0 37 17-54 44-83 (86)
21 2hhz_A Pyridoxamine 5'-phospha 25.2 1.1E+02 0.0036 24.9 5.3 20 231-250 110-129 (150)
22 3ju0_A Phage integrase; four s 25.1 66 0.0023 26.2 3.9 40 313-353 22-76 (108)
23 3dmb_A Putative general stress 23.5 70 0.0024 26.4 3.8 23 231-253 114-136 (147)
No 1
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}
Probab=99.97 E-value=1.7e-30 Score=244.79 Aligned_cols=147 Identities=16% Similarity=0.095 Sum_probs=129.4
Q ss_pred CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442 158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF 237 (371)
Q Consensus 158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF 237 (371)
.+||+|+|.++++..+|...++++|+.+++.... +.+++||.|
T Consensus 104 ~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~-------------------------------------~~~~~df~l 146 (258)
T 3dnh_A 104 LPRLTLVGRADRIGPDEVPLAIARYIARYPKAKL-------------------------------------YLSLPDTRL 146 (258)
T ss_dssp SCEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHH-------------------------------------HTSSTTEEE
T ss_pred CCeEEEEEEEEEcCchHHHHHHHHHHHHCcChHH-------------------------------------cccCCCeEE
Confidence 4799999999999766667799999999766544 356789999
Q ss_pred EEEEEeEEEEEcCCcc-ccccCHhhhhc--cCCchhhhhhHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecC
Q 017442 238 YKLEMTKIQPILAHAH-QAAVDIEDYRK--AQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDS 314 (371)
Q Consensus 238 YRLe~~rVrlIGGFGr-a~wV~~eDy~a--A~PDpLA~~Ea~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr 314 (371)
|||++++++|+||||+ ++||++++|.+ |.||||++.+++||+|||++| ++ |.+||+ +.|+.++.|+|+||||
T Consensus 147 ~rl~~~~v~~v~GFG~~a~~v~~~d~~~~~a~~d~l~~~~~~ii~hmN~dH-d~---l~~~~~-~~~~~~~~a~~~~vD~ 221 (258)
T 3dnh_A 147 YRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIK-GE---ASRLAV-LAGAKTGRWKITSIDP 221 (258)
T ss_dssp EEEEEEEEEEEC------CCCCHHHHSCCCTTCHHHHHHHHHHHHHHHTST-TH---HHHHHH-HTTCCCSSCEEEEEET
T ss_pred EEEEEeEEEEEcccCcccccCCHHHhcccCCCCchhHHHHHHHHHHHHhhH-HH---HHHHHH-hCCCCCCcEEEEEEcc
Confidence 9999999999999999 99999999999 889999999999999999999 88 999999 8898889999999999
Q ss_pred CCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442 315 IGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF 353 (371)
Q Consensus 315 ~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~ 353 (371)
+|||||++ .+.+||+|+ ++++++|++|++|+.
T Consensus 222 ~G~dl~~~----~~~~Ri~F~---~d~~~~r~~lv~m~~ 253 (258)
T 3dnh_A 222 DGIDLASA----SDLARLWFA---ERVETLKQFEKALAQ 253 (258)
T ss_dssp TEEEEECS----SCEEEEECS---SCCCSHHHHHHHHHH
T ss_pred CcCEEEEC----CEEEEeeCC---CCHHHHHHHHHHHHH
Confidence 99999983 389999999 899999999999984
No 2
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1
Probab=99.96 E-value=9.1e-30 Score=235.05 Aligned_cols=151 Identities=13% Similarity=0.099 Sum_probs=134.0
Q ss_pred CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442 158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF 237 (371)
Q Consensus 158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF 237 (371)
-.+|+|.|.++++..++...++.+|..+++.... +.+.++|.|
T Consensus 85 ~~~v~l~G~a~~v~d~e~~~~~~~~~~~~P~~~~-------------------------------------~~~~~~~~l 127 (247)
T 2arz_A 85 VGRLTLLAEARQLAEEEVAAAAERYYRYFPESAD-------------------------------------YHRVHDFDF 127 (247)
T ss_dssp SCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTT-------------------------------------CBTTBBEEE
T ss_pred CceEEEEEEEEECCcHHHHHHHHHHHHHCcChhh-------------------------------------cccccCcEE
Confidence 4699999999999754445689999887554322 346789999
Q ss_pred EEEEEeEEEEEcCCccccccCHhhhhccCCchhhh-hhHHHHHHHhcCCcchHHHHHHHHHHhcCCCCCceEEEeecCCC
Q 017442 238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIG 316 (371)
Q Consensus 238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~PDpLA~-~Ea~II~HMN~DHada~~AL~~la~~~~g~~v~~armiGVDr~G 316 (371)
|||+|++++|++|||+++||++++|.+| |||+. .+++||+|||+||+++ |.+||+++.++..+.|+|+|||++|
T Consensus 128 ~rl~~~~~~~~~gfG~~~~v~~~~~~~a--dp~~~~~~~~ii~hmN~dH~~~---l~~~~~~~~~~~~~~~~~~~iD~~G 202 (247)
T 2arz_A 128 WVLQPVQWRFIGGFGAIHWLAAERVPLA--NPFAGEAERGMVEHMNSDHAAA---IAHYVELAGLPAHAAAQLAGIDTEG 202 (247)
T ss_dssp EEEEEEEEEEECTTCCEEEEETTTSCCC--CTTTTHHHHHHHHHHHHHCHHH---HHHHHHHHCCCCSSCCEEEEECSSE
T ss_pred EEEEEEEEEEEcCCCceEEeChhhhccc--hhhhhhhHHHHHHHHHHHHHHH---HHHHHHHhCCCCccceEEEEEccCC
Confidence 9999999999999999999999999988 99999 9999999999999987 9999999888877889999999999
Q ss_pred ceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcCc
Q 017442 317 FDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP 354 (371)
Q Consensus 317 fDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~p 354 (371)
||||+. .+.+||+|++|+++..++|++|++|+..
T Consensus 203 ~~l~~~----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~ 236 (247)
T 2arz_A 203 FHLRIG----QGLHWLPFPAACGNPGAVRQALVQLARA 236 (247)
T ss_dssp EEEEET----TEEEEEECSSCCCSHHHHHHHHHHHHHC
T ss_pred CEEEEC----CEEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999984 2789999999999999999999999964
No 3
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=99.48 E-value=4.4e-14 Score=134.04 Aligned_cols=73 Identities=25% Similarity=0.252 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442 275 ANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF 353 (371)
Q Consensus 275 a~II~HMN~DHada~~AL~~la~~~~g~~-v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~ 353 (371)
++||+|||+||+++ |.+||+++.|+. +..|+|++||++||+|++. +...+||+|++|++++.++|++|++|..
T Consensus 3 ~~ii~HMN~DH~da---l~~y~~~~~~~~~~~~a~m~~iD~~G~~l~~~---~~~~~ri~F~~~~~~~~~~r~~lV~m~~ 76 (259)
T 3gas_A 3 NRIIEHMNAHHVED---MKGLLKKFGQVHHAENVAFKSVDSQGIVIGYN---NNQTLRIEFNHEVKDPKDYKNATIELCQ 76 (259)
T ss_dssp HHHHHHHHHHCHHH---HHHHHHHHHCCCSCCSCEEEEEETTEEEEEET---TTEEEEEECSSCCCCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHH---HHHHHHHhCCCCCCCceEEEEEecCccEEEEC---CceEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 58999999999988 999999998885 6789999999999999983 2489999999999999999999999984
No 4
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=99.46 E-value=6.8e-14 Score=131.69 Aligned_cols=72 Identities=28% Similarity=0.414 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhcCCC-CCceEEEeecCCCceEEEeeCCcceEEEEecCCCCCCHHHHHHHHHHhcC
Q 017442 275 ANIISRLKAGGEKTTQALKSLCWRTKGIQ-VEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLF 353 (371)
Q Consensus 275 a~II~HMN~DHada~~AL~~la~~~~g~~-v~~armiGVDr~GfDLRv~sg~g~~~lRl~F~~patd~~darkaLv~LL~ 353 (371)
++||+|||+||+++ |.+||+++.|+. +..|+|++||++||+|+++ +...+||+|++|+ ++.++|++|++|+.
T Consensus 4 ~~i~~HMN~DH~d~---~~~~a~~~~~~~~~~~~~~~~iD~~g~~l~~~---~~~~~ri~F~~~~-~~~~~r~~lv~m~~ 76 (251)
T 3swj_A 4 ESIISHMNDHHKSN---LVDLCKKFGGIEQVQDVFLKSVDFNGLDLVYN---DKENLRVEFPKKA-DENTIKDTIISLCM 76 (251)
T ss_dssp HHHHHHHHHSCSHH---HHHHHHHHTCCSCCC-CEEEEEETTEEEEEC------CEEEEECSSCC-CTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH---HHHHHHHhCCCCCCCeeEEEEEecccCEEEeC---CceEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence 58999999999998 999999998884 7899999999999999883 2479999999999 99999999999984
No 5
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1
Probab=98.98 E-value=5.5e-10 Score=99.16 Aligned_cols=73 Identities=15% Similarity=0.017 Sum_probs=61.1
Q ss_pred CCeeeEEEEeeecccccchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442 158 PAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF 237 (371)
Q Consensus 158 ~arlti~G~~rpa~~ee~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF 237 (371)
-+||+|.|.++++..+|...++++|+.+++.... +.+.++|.|
T Consensus 111 ~~rvtl~G~a~~v~d~e~~~~~~~~~~~hP~~~~-------------------------------------~~~~~~~~~ 153 (184)
T 1xhn_A 111 CVHIMLSGTVTKVNETEMDIAKHSLFIRHPEMKT-------------------------------------WPSSHNWFF 153 (184)
T ss_dssp SCEEEEEEEEEECCGGGHHHHHHHHHHHCGGGGG-------------------------------------SCGGGCCEE
T ss_pred CceEEEEEEEEECChHHHHHHHHHHHHHCcChhH-------------------------------------cccCCCEEE
Confidence 4699999999999765556788889987655433 235679999
Q ss_pred EEEEEeEEEEEcCCccccccCHhhhhccCC
Q 017442 238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQP 267 (371)
Q Consensus 238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~P 267 (371)
|||++++++|++|||+++||++++|.+|.|
T Consensus 154 ~~l~i~~i~~v~gFG~~~~v~~~~~~~a~~ 183 (184)
T 1xhn_A 154 AKLNITNIWVLDYFGGPKIVTPEEYYNVTV 183 (184)
T ss_dssp EEEEEEEEEEECSSSSCEECCHHHHHHCC-
T ss_pred EEEEEeEEEEEccCCceEEeCHHHHhhccC
Confidence 999999999999999999999999998876
No 6
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=98.85 E-value=7.5e-10 Score=105.04 Aligned_cols=75 Identities=7% Similarity=-0.094 Sum_probs=60.4
Q ss_pred CCeeeEEEEeeecccc-cchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeE
Q 017442 158 PAGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTS 236 (371)
Q Consensus 158 ~arlti~G~~rpa~~e-e~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFs 236 (371)
..|||++|.++++..+ +...++.+|+.+++...+ -+.+.+++||.
T Consensus 164 ~~Rlt~~g~A~~v~~~~~~~~~~~~~~~r~p~~~~----------------------------------~~~~~~~~DF~ 209 (259)
T 3gas_A 164 RKRLRYKTNTRFIERGAEFDKAFDSFIEKTGGAGG----------------------------------IKTIRAMQDFH 209 (259)
T ss_dssp CCEEEEEEEEEEECSSHHHHHHHHHHHHHHCSTTT----------------------------------HHHHHTCTTEE
T ss_pred cCeEEEEEEEEECCCchHHHHHHHHHHHHcCCchh----------------------------------hHhcccCCCeE
Confidence 4799999999999643 344589999998554211 02257899999
Q ss_pred EEEEEEeEEEEEcCCccccccCHhhhhccC
Q 017442 237 FYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 266 (371)
Q Consensus 237 FYRLe~~rVrlIGGFGra~wV~~eDy~aA~ 266 (371)
||||+|+++|||+|||+++||++++|....
T Consensus 210 l~rl~p~~~r~v~GFG~a~~l~~~~l~~~~ 239 (259)
T 3gas_A 210 LIALDFKEGRFVKGFGQAYDILGDKIAYVG 239 (259)
T ss_dssp EEEEEEEEEEEEEETTEEEEEETTEEEESC
T ss_pred EEEEEEeEEEEEccccEEEEeCHHHHHHhh
Confidence 999999999999999999999999998644
No 7
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=98.76 E-value=3e-09 Score=100.10 Aligned_cols=74 Identities=9% Similarity=-0.039 Sum_probs=59.9
Q ss_pred CeeeEEEEeeecccc-cchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCeEE
Q 017442 159 AGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSF 237 (371)
Q Consensus 159 arlti~G~~rpa~~e-e~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DFsF 237 (371)
.||+|+|.++.+..+ +...++.+|+.+++.+.. -+.+.+++||.|
T Consensus 165 ~rltl~G~a~~v~~~~e~~~~~~~~~~k~p~a~~----------------------------------~~~~~~~~Df~l 210 (251)
T 3swj_A 165 KRLRYRVNASFLERGERFDQIYDEFEKQTGGEGG----------------------------------IKTIRKMLDFHL 210 (251)
T ss_dssp CEEEEEEEEEECCSSHHHHHHHHHHHHHHCSTTT----------------------------------HHHHHTCTTEEE
T ss_pred ceEEEEEEEEEecChhHHHHHHHHHHHHCCCchh----------------------------------hhhcCcccCEEE
Confidence 699999999999753 445688889888554311 012467899999
Q ss_pred EEEEEeEEEEEcCCccccccCHhhhhccC
Q 017442 238 YKLEMTKIQPILAHAHQAAVDIEDYRKAQ 266 (371)
Q Consensus 238 YRLe~~rVrlIGGFGra~wV~~eDy~aA~ 266 (371)
|||+|++++||+|||+++||++++|..+.
T Consensus 211 ~rl~p~~~r~v~GFG~a~~l~~~~l~~~~ 239 (251)
T 3swj_A 211 VKLEFKKGRFVKGFGQAYDIENGNVTHVG 239 (251)
T ss_dssp EEEEEEEEEEEEETTEEEEESSSCCEESC
T ss_pred EEEEeeEEEEECCcceeEEeCHHHHHHhh
Confidence 99999999999999999999999998765
No 8
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=98.33 E-value=1.4e-07 Score=81.27 Aligned_cols=60 Identities=3% Similarity=-0.043 Sum_probs=44.7
Q ss_pred CCeeeEEEEeeecccccc--hHHHHHhhcCC-CCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 017442 158 PAGITIQGLLRPALIEEH--SDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG 234 (371)
Q Consensus 158 ~arlti~G~~rpa~~ee~--s~ir~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~D 234 (371)
.+||||+|.++.+..+++ ..++++|+.++ +... .+.+++|
T Consensus 79 ~~rltl~G~a~~v~~~~~~~~~~~~~~~~~~~~~a~-------------------------------------~~~~~~D 121 (148)
T 3tgv_A 79 RKRLTFDAVASMVERDSELWCQVIAQMGERFGEIID-------------------------------------GLSQLQD 121 (148)
T ss_dssp CCEEEEEEEEEEECTTSHHHHHHHHHHHHHHCTHHH-------------------------------------HHTTCTT
T ss_pred ceEEEEeeeEEEcCCCcHHHHHHHHHHHhhcchhhh-------------------------------------HhhccCC
Confidence 479999999999974332 34666676652 2111 1467899
Q ss_pred eEEEEEEEeEEEEEcCCccc
Q 017442 235 TSFYKLEMTKIQPILAHAHQ 254 (371)
Q Consensus 235 FsFYRLe~~rVrlIGGFGra 254 (371)
|.||||+|++++||||||-.
T Consensus 122 F~~~rl~p~~~r~V~GFG~~ 141 (148)
T 3tgv_A 122 FMLFRLQPEQGLFVKGFGLE 141 (148)
T ss_dssp EEEEEEEECSCCEEESCGGG
T ss_pred EEEEEEEeEEEEEECccccc
Confidence 99999999999999999954
No 9
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Probab=97.40 E-value=4.3e-05 Score=65.46 Aligned_cols=59 Identities=3% Similarity=-0.063 Sum_probs=43.7
Q ss_pred CCeeeEEEEeeeccccc--chHHHHHhhcCCCCC-CcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCC
Q 017442 158 PAGITIQGLLRPALIEE--HSDIQRHRSSNQYHD-VDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNG 234 (371)
Q Consensus 158 ~arlti~G~~rpa~~ee--~s~ir~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~D 234 (371)
..+|+|.|.++.+..++ ...++.+|..+++.. .. +.+.++
T Consensus 96 ~~~v~i~G~a~~v~~~~~~~~~~~~~~~~~~p~~~~~-------------------------------------~~~~~~ 138 (157)
T 1vl7_A 96 RRRLSFDCTATLIERESQKWNQVVDQFQERFGQIIEV-------------------------------------LRGLAD 138 (157)
T ss_dssp CCEEEEEEEEEEECTTSHHHHHHHHHHHHHHTHHHHH-------------------------------------HHHHSC
T ss_pred CceEEEEEEEEEcCCCcHHHHHHHHHHHHHCchHHHH-------------------------------------hhccCC
Confidence 37899999999996442 235777787763321 11 134569
Q ss_pred eEEEEEEEeEEEEEcCCcc
Q 017442 235 TSFYKLEMTKIQPILAHAH 253 (371)
Q Consensus 235 FsFYRLe~~rVrlIGGFGr 253 (371)
|.+|||+|++++|++|||+
T Consensus 139 ~~l~~l~~~~~~~~~GFG~ 157 (157)
T 1vl7_A 139 FRIFQLTPKEGRFVIGFGA 157 (157)
T ss_dssp CEEEEEEEEEEEEECSSCC
T ss_pred EEEEEEEEeEEEEEcCcCC
Confidence 9999999999999999996
No 10
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1
Probab=86.31 E-value=0.89 Score=37.09 Aligned_cols=23 Identities=0% Similarity=-0.363 Sum_probs=21.1
Q ss_pred CCCeEEEEEEEeEEEEEcCCccc
Q 017442 232 MNGTSFYKLEMTKIQPILAHAHQ 254 (371)
Q Consensus 232 ~~DFsFYRLe~~rVrlIGGFGra 254 (371)
.+++.+|||.|.+++|..|+|++
T Consensus 114 ~~~~~~~~i~p~~~~~w~~~~~~ 136 (146)
T 2hq7_A 114 DPDYTALCFTAEWGNYYRHLKNI 136 (146)
T ss_dssp CTTEEEEEEEEEEEEEEETTEEE
T ss_pred CCCEEEEEEEccEEEEEeCCCCe
Confidence 36899999999999999999986
No 11
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1
Probab=81.60 E-value=3.5 Score=33.26 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=19.0
Q ss_pred CCCeEEEEEEEeEEEEEcCCccc
Q 017442 232 MNGTSFYKLEMTKIQPILAHAHQ 254 (371)
Q Consensus 232 ~~DFsFYRLe~~rVrlIGGFGra 254 (371)
.+++.+|||+|.+++|..| |+.
T Consensus 114 ~~~~~~~~i~p~~~~~~~~-~~~ 135 (141)
T 2fhq_A 114 DPGYVLLKFTANHATYWIE-GTF 135 (141)
T ss_dssp CTTEEEEEEEEEEEEEEET-TEE
T ss_pred CCCEEEEEEEcCEEEEeeC-Cce
Confidence 4689999999999999988 654
No 12
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0
Probab=75.44 E-value=6.5 Score=32.04 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=17.3
Q ss_pred CCCCeEEEEEEEeEEEEEcCCc
Q 017442 231 PMNGTSFYKLEMTKIQPILAHA 252 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIGGFG 252 (371)
+.+++.++||+|.+++|..+.|
T Consensus 109 ~~~~~~~i~i~p~~~~~~d~~g 130 (139)
T 3ec6_A 109 EDPNYVLIKINPDTIYYIDGAG 130 (139)
T ss_dssp TCTTEEEEEEEEEEEEEEC---
T ss_pred CCCCEEEEEEEeeEEEEEcCCC
Confidence 4568999999999999999987
No 13
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1
Probab=64.09 E-value=12 Score=30.47 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=17.3
Q ss_pred CCCeEEEEEEEeEEEEEcCC
Q 017442 232 MNGTSFYKLEMTKIQPILAH 251 (371)
Q Consensus 232 ~~DFsFYRLe~~rVrlIGGF 251 (371)
.+++.+|||.|.+++|.++-
T Consensus 119 ~~~~~v~~i~~~~~~~~~~~ 138 (148)
T 2i02_A 119 EPDIALLKVNINQVNYWDST 138 (148)
T ss_dssp CTTEEEEEEEEEEEEEEEGG
T ss_pred CCCEEEEEEEeCEEEEEcCC
Confidence 45799999999999998763
No 14
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}
Probab=63.50 E-value=13 Score=29.42 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=13.8
Q ss_pred CCCCeEEEEEEEeEEEEEc
Q 017442 231 PMNGTSFYKLEMTKIQPIL 249 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIG 249 (371)
+.+++.++||+|.+++|..
T Consensus 109 ~~~~~~~~ri~p~~~~~~~ 127 (128)
T 3db0_A 109 DSPSFVVIKIVPEQIRILN 127 (128)
T ss_dssp ----CCEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEeEEEEEec
Confidence 3468999999999999874
No 15
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1
Probab=63.36 E-value=14 Score=29.96 Aligned_cols=56 Identities=5% Similarity=0.000 Sum_probs=36.5
Q ss_pred CCCeeeEEEEeeecccc-cchHHHHHhhcCCCCCCcccccccccCCccccccccCCCCCCCCCCCCCcccccCCCCCCCe
Q 017442 157 PPAGITIQGLLRPALIE-EHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGT 235 (371)
Q Consensus 157 p~arlti~G~~rpa~~e-e~s~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~~~~~~~~~~~DF 235 (371)
+..+++|.|.++.+... +...+.++|..+.+. . ...+++
T Consensus 78 ~~~~v~v~G~a~~~~d~~~~~~~~~~~~~~~~~--~--------------------------------------~~~~~~ 117 (137)
T 2asf_A 78 GARWLSLEGRAAVNSDIDAVRDAELRYAQRYRT--P--------------------------------------RPNPRR 117 (137)
T ss_dssp TTEEEEEEEEEEEECCHHHHHHHHHHHHHHSCC--C--------------------------------------CCCTTE
T ss_pred CCCEEEEEEEEEEecCHHHHHHHHHHHHHhcCc--c--------------------------------------cCCCCE
Confidence 45789999999988532 222345556544211 1 124578
Q ss_pred EEEEEEEeEEEEEcCCc
Q 017442 236 SFYKLEMTKIQPILAHA 252 (371)
Q Consensus 236 sFYRLe~~rVrlIGGFG 252 (371)
.+|||+|++++-.++.+
T Consensus 118 ~viri~~~~v~g~~~~~ 134 (137)
T 2asf_A 118 VVIEVQIERVLGSADLL 134 (137)
T ss_dssp EEEEEEEEEEEECTTTC
T ss_pred EEEEEEEEEEEEecccc
Confidence 99999999999766543
No 16
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}
Probab=56.25 E-value=20 Score=30.02 Aligned_cols=20 Identities=5% Similarity=0.233 Sum_probs=16.6
Q ss_pred CCeEEEEEEEeEEEEEcCCc
Q 017442 233 NGTSFYKLEMTKIQPILAHA 252 (371)
Q Consensus 233 ~DFsFYRLe~~rVrlIGGFG 252 (371)
+++.+|||.|++|.+-++.+
T Consensus 119 ~~~~~~ri~p~~v~~w~~~~ 138 (155)
T 2iab_A 119 TSYLYFRISPRRVQAWREAN 138 (155)
T ss_dssp SCEEEEEEEEEEEEEESSGG
T ss_pred CCEEEEEEEEEEEEEecCCC
Confidence 57999999999999777533
No 17
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}
Probab=53.14 E-value=30 Score=27.58 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=14.4
Q ss_pred CCCCeeeEEEEeeecccc
Q 017442 156 QPPAGITIQGLLRPALIE 173 (371)
Q Consensus 156 ~p~arlti~G~~rpa~~e 173 (371)
.|-.+|+|.|.++.+..+
T Consensus 72 ~~~~~v~v~G~a~~v~~~ 89 (131)
T 3f7e_A 72 NPYRYLEVRGLVEDIVPD 89 (131)
T ss_dssp CTTCEEEEEEEEEEEEEC
T ss_pred CCeeEEEEEEEEEEeccC
Confidence 356799999999988643
No 18
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus}
Probab=40.46 E-value=27 Score=27.74 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=16.4
Q ss_pred CCCeEEEEEEEeEEEEEcC
Q 017442 232 MNGTSFYKLEMTKIQPILA 250 (371)
Q Consensus 232 ~~DFsFYRLe~~rVrlIGG 250 (371)
.+++.+|||.|.+++|-.|
T Consensus 115 ~~~~~~~~i~~~~~~~w~~ 133 (134)
T 2re7_A 115 DANIQLIKVVPHGVECWLS 133 (134)
T ss_dssp CTTEEEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEeCEEEEecC
Confidence 4589999999999998765
No 19
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}
Probab=29.70 E-value=1.4e+02 Score=24.67 Aligned_cols=22 Identities=0% Similarity=-0.327 Sum_probs=18.1
Q ss_pred CCCCeEEEEEEEeEEEEEcCCc
Q 017442 231 PMNGTSFYKLEMTKIQPILAHA 252 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIGGFG 252 (371)
+.+++.+|||++..++|-..-|
T Consensus 122 ~dp~~~l~~v~~~~a~~wd~~~ 143 (150)
T 2ig6_A 122 DDGIFAVLYFTKGEGTICSFKG 143 (150)
T ss_dssp TSSCEEEEEEEEEEEEEECSSS
T ss_pred CCCcEEEEEEECCEEEEEeCCC
Confidence 4568999999999999986543
No 20
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=28.83 E-value=57 Score=26.13 Aligned_cols=37 Identities=24% Similarity=0.553 Sum_probs=28.7
Q ss_pred CCCCe---eeccCCCEEEEecCchhHhhhhccCCCceEEEE
Q 017442 17 PDLPY---VTDEHGNIYIQVKNEEDILQSLISENNFVQVII 54 (371)
Q Consensus 17 ~e~~y---~~d~~g~i~f~v~~~~~il~~~~~~~n~v~v~i 54 (371)
++.+| -+|++||+ ..++||+|+-.-++.++-...++|
T Consensus 44 ~~~~f~i~Y~D~dGDL-lpInnDdnl~~Al~~a~plLRl~I 83 (86)
T 1wmh_B 44 PGLDVLLGYTDAHGDL-LPLTNDDSLHRALASGPPPLRLLV 83 (86)
T ss_dssp TTCCCEEEEECTTSCE-EECCSHHHHHHHTTSSSSCEEEEE
T ss_pred CCCCEEEEEECCCCCE-eeecCHHHHHHHHHhCCCcEEEEE
Confidence 44444 46999996 799999999999987755667766
No 21
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis}
Probab=25.18 E-value=1.1e+02 Score=24.92 Aligned_cols=20 Identities=0% Similarity=-0.170 Sum_probs=14.9
Q ss_pred CCCCeEEEEEEEeEEEEEcC
Q 017442 231 PMNGTSFYKLEMTKIQPILA 250 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIGG 250 (371)
+.+++.+|||++.+++|-..
T Consensus 110 ~~~~~~v~~i~~~~~~~~d~ 129 (150)
T 2hhz_A 110 SSDTMQVFQIYAGHGFYHSL 129 (150)
T ss_dssp ---CCEEEEEEEEEEEEEEG
T ss_pred CCCcEEEEEEEccEEEEEEC
Confidence 34589999999999988653
No 22
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=25.10 E-value=66 Score=26.21 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=24.5
Q ss_pred cCCCceEEEeeCCcceEEEEec------------CCCCCCHHHHH---HHHHHhcC
Q 017442 313 DSIGFDLRVCAGTQIQTLRFAF------------NTRATSEYSAE---RQLNDLLF 353 (371)
Q Consensus 313 Dr~GfDLRv~sg~g~~~lRl~F------------~~patd~~dar---kaLv~LL~ 353 (371)
|.-||-|+|.. .|....+|.| .-|..+..+|| ..++.+|.
T Consensus 22 Dg~GL~L~V~p-sG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~ 76 (108)
T 3ju0_A 22 DGFGMHLLVHP-NGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA 76 (108)
T ss_dssp EETTEEEEECT-TSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEc-CCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56899999962 2334443333 12678888888 45555654
No 23
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV}
Probab=23.52 E-value=70 Score=26.41 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=19.0
Q ss_pred CCCCeEEEEEEEeEEEEEcCCcc
Q 017442 231 PMNGTSFYKLEMTKIQPILAHAH 253 (371)
Q Consensus 231 ~~~DFsFYRLe~~rVrlIGGFGr 253 (371)
+.+++..||+.|.+++|-.|-|.
T Consensus 114 ~dp~~~vl~v~p~~~e~W~~~~~ 136 (147)
T 3dmb_A 114 DDPKLALLRLDADHAQIWLNGSS 136 (147)
T ss_dssp GCTTCEEEEEEEEEEEEEECCCC
T ss_pred CCCCEEEEEEEcCEEEEEECCCC
Confidence 34688999999999999887654
Done!