BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017444
         (371 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5XII5|WAP53_RAT Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2
           SV=1
          Length = 532

 Score = 33.1 bits (74), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 19/140 (13%)

Query: 37  FVTFFIIFLTGVYVYPSGSGSLASCYFFSAQVVFKEILNKPP-VHSKNPKVAFMFLTP-- 93
           F T    FL G    P GS  L +    SA  V + I N PP ++S++ +V +  + P  
Sbjct: 148 FSTRSENFLKGCKWAPDGSCILTN----SADNVLR-IYNLPPELYSESEQVDYAEMVPVL 202

Query: 94  ----GNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISML 149
               G+  ++  W       +   S    +S E P+H+   F G ++R+   A+  +  L
Sbjct: 203 RMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTG-ELRASFRAYNHLDEL 261

Query: 150 DAEKRLLAHAL-LDPDNQQF 168
            A     AH+L   PD  Q 
Sbjct: 262 TA-----AHSLCFSPDGSQL 276


>sp|Q8VC51|WAP53_MOUSE Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1
          Length = 532

 Score = 32.7 bits (73), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 19/140 (13%)

Query: 37  FVTFFIIFLTGVYVYPSGSGSLASCYFFSAQVVFKEILNKPP-VHSKNPKVAFMFLTP-- 93
           F T    FL G    P GS  L +    SA  V + I N PP ++S+  +V +  + P  
Sbjct: 148 FSTRSENFLKGCKWAPDGSCILTN----SADNVLR-IYNLPPELYSEQEQVDYAEMVPVL 202

Query: 94  ----GNLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISML 149
               G+  ++  W       +   S    +S E P+H+   F G ++R+   A+  +  L
Sbjct: 203 RMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFTG-ELRASFRAYNHLDEL 261

Query: 150 DAEKRLLAHAL-LDPDNQQF 168
            A     AH+L   PD  Q 
Sbjct: 262 TA-----AHSLCFSPDGSQL 276


>sp|Q91XJ0|CREST_RAT Calcium-responsive transcription coactivator OS=Rattus norvegicus
           GN=Ss18l1 PE=1 SV=1
          Length = 401

 Score = 32.0 bits (71), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 171 LSDSCIPLHNFDYVYNYLMYTNVSYVDCFEDPGPH----GNGRYSEHM 214
           +S    P  + DY Y    YT  SY   FEDP  H    GN +YS+  
Sbjct: 272 MSQQYYPDGHSDYAYQQSSYTEQSYDRSFEDPTQHYYEGGNSQYSQQQ 319


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,438,173
Number of Sequences: 539616
Number of extensions: 6429617
Number of successful extensions: 15083
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15083
Number of HSP's gapped (non-prelim): 5
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)