Query 017444
Match_columns 371
No_of_seqs 222 out of 651
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 3.7E-46 7.9E-51 374.6 22.6 241 80-367 74-362 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 3.6E-46 7.8E-51 351.0 12.6 223 86-315 1-243 (244)
3 KOG0799 Branching enzyme [Carb 99.9 1.1E-25 2.4E-30 229.1 14.2 216 83-307 102-350 (439)
4 cd06439 CESA_like_1 CESA_like_ 24.1 5.3E+02 0.012 23.2 11.1 101 80-190 25-133 (251)
5 KOG0071 GTP-binding ADP-ribosy 23.3 3.8E+02 0.0082 24.0 7.0 76 95-195 71-153 (180)
6 PF14812 PBP1_TM: Transmembran 22.9 11 0.00023 30.1 -2.3 19 27-45 61-79 (81)
7 PF13396 PLDc_N: Phospholipase 20.4 1.2E+02 0.0027 20.6 2.9 24 24-47 16-39 (46)
8 PTZ00021 falcipain-2; Provisio 19.9 1E+02 0.0022 32.6 3.4 54 25-78 29-87 (489)
9 TIGR03038 PS_II_psbM photosyst 19.0 96 0.0021 20.5 1.9 19 34-52 11-29 (33)
10 cd04184 GT2_RfbC_Mx_like Myxoc 17.9 4.5E+02 0.0097 22.6 6.7 40 84-123 1-42 (202)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=3.7e-46 Score=374.63 Aligned_cols=241 Identities=20% Similarity=0.265 Sum_probs=181.7
Q ss_pred CCCCCcEEEEEEcC-CC-CchHHHHHHHhhccCCCceEEEEeCCCCCCC-----------------ccceeeeeecCCCc
Q 017444 80 HSKNPKVAFMFLTP-GN-LPFENLWEKFFHGHEDRFSVYVHASSEKPMH-----------------VSRYFVGRDIRSEK 140 (371)
Q Consensus 80 ~~~~~KiAfLfL~~-~~-~~l~~Lw~~~f~~~~~~~~IYIHvD~k~~~~-----------------~~~~F~~~~i~s~~ 140 (371)
.+.++||||||++| ++ .++++|+..+ .++++.+|||+|+|++.. ..+++... ++..
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aL---YhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~--k~~~ 148 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRAL---YHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMIT--KANL 148 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHh---cCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEe--ccee
Confidence 45689999999998 66 4588888876 477889999999998731 12333311 1367
Q ss_pred cccCcccHHHHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHH-HHHHHhc-CCccceecccCCCCCCCCCccc-----
Q 017444 141 VAWGRISMLDAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDY-VYNYLMY-TNVSYVDCFEDPGPHGNGRYSE----- 212 (371)
Q Consensus 141 V~WG~~SlV~Ael~Ll~~AL~-d~~~~yf~LLSgsd~PL~s~~~-I~~fL~~-~~~sFI~~~~~~~p~~~~Ry~~----- 212 (371)
|+|||+|+|+||+++|+.+|+ ..+|+|||||||+||||+++++ |+.|+.. .|+|||++....+.....|+..
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 999999999999999999998 5799999999999999999999 5677776 7899999875322211112110
Q ss_pred ------c--c---Cc--ccc-ccccccccceeeecHHHHHHHHh--C--hHHHHHHHhhccCCCCCCcccCCcchhhhhh
Q 017444 213 ------H--M---LP--EVE-KKDFRKGSQWFTLKRQHAMIIMA--D--SLYYTKFKHYCKPNMEGRNCYADEHYLPTLF 274 (371)
Q Consensus 213 ------~--m---lp--~i~-~~~~~kGSqWfsLtR~~a~~Il~--d--~~~~~~F~~~c~~~~~~~~~~pDE~yfqTlL 274 (371)
+ + .+ .+| ..++++|||||+|||++|+|++. | +.....|.+ ++++|||+||||++
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~--------~t~~pdE~fFqTVl 300 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT--------NFVSSPEGYFHTVI 300 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh--------cCCCCchHHHHHHH
Confidence 0 0 01 123 57899999999999999999996 2 333444443 36789999999999
Q ss_pred cccC--CCCCCCCceEEEeCCCC-CCCCcccccCCCCHHHHHHHhcccccccccccccccccccccccCCCCCCcceEEe
Q 017444 275 HMID--PAGIANWSVTHADWSEG-KWHPKAYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMKRPCYLFAR 351 (371)
Q Consensus 275 ~~~~--~~~i~n~~lryIdW~~g-~~hP~~~~~~D~~~elL~~i~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~LFAR 351 (371)
+|.. .++++|.++|||||+++ +.||++|+.+|++ +|.+ ++++|||
T Consensus 301 ~NS~~f~~t~vn~nLRyI~W~~~~~~~P~~l~~~D~~-----~l~~---------------------------S~~lFAR 348 (421)
T PLN03183 301 CNVPEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDTE-----KMIA---------------------------SGAAFAR 348 (421)
T ss_pred hhcccccccccCCceeEEecCCCCCCCCcccCHHHHH-----HHHh---------------------------CCCcccc
Confidence 8763 47788999999999975 4699999999974 3444 2589999
Q ss_pred cCCcchHHHHHHhhhh
Q 017444 352 KFNPEALDKLVFLFVN 367 (371)
Q Consensus 352 KF~~~~~~~ll~ll~~ 367 (371)
||+. ++.+++.++.
T Consensus 349 KFd~--d~~vl~~Id~ 362 (421)
T PLN03183 349 KFRR--DDPVLDKIDK 362 (421)
T ss_pred CCCC--ChHHHHHHHH
Confidence 9997 4566776664
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=3.6e-46 Score=350.97 Aligned_cols=223 Identities=28% Similarity=0.467 Sum_probs=143.4
Q ss_pred EEEEEEcCC-CCchHHHHHHHhhccCCCceEEEEeCCCCCC------Cc--cceeeeeecC-CCccccCcccHHHHHHHH
Q 017444 86 VAFMFLTPG-NLPFENLWEKFFHGHEDRFSVYVHASSEKPM------HV--SRYFVGRDIR-SEKVAWGRISMLDAEKRL 155 (371)
Q Consensus 86 iAfLfL~~~-~~~l~~Lw~~~f~~~~~~~~IYIHvD~k~~~------~~--~~~F~~~~i~-s~~V~WG~~SlV~Ael~L 155 (371)
|||||+||+ +.++.++|.+++ +++++.+|||+|+|++. .. ........++ +++|.||++|||+||++|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l--~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~l 78 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLL--YHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNL 78 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHh--cCCCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHHHH
Confidence 799999977 666444444443 35677888999999752 10 1111122344 689999999999999999
Q ss_pred HHHHhc-CCCCCEEEEecCCCccCCChHHHHHHHhcC--CccceecccCCCCCCCCCcccc----cCccccccccccccc
Q 017444 156 LAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYLMYT--NVSYVDCFEDPGPHGNGRYSEH----MLPEVEKKDFRKGSQ 228 (371)
Q Consensus 156 l~~AL~-d~~~~yf~LLSgsd~PL~s~~~I~~fL~~~--~~sFI~~~~~~~p~~~~Ry~~~----mlp~i~~~~~~kGSq 228 (371)
|++|++ +++|+|||||||+|+||+|+++|++||+.. +.+|+++...+++....||... +.+.++..++++|||
T Consensus 79 l~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~GSq 158 (244)
T PF02485_consen 79 LREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKGSQ 158 (244)
T ss_dssp HHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE-S
T ss_pred HHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeecccccccccccccce
Confidence 999999 789999999999999999999999999984 5788998876544322455433 223333458999999
Q ss_pred eeeecHHHHHHHHhChHHHHHHHhhccCCCCCCcccCCcchhhhhhccc--CCCCCCCCceEEEeCC-CCCCCCcccccC
Q 017444 229 WFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMI--DPAGIANWSVTHADWS-EGKWHPKAYRAQ 305 (371)
Q Consensus 229 WfsLtR~~a~~Il~d~~~~~~F~~~c~~~~~~~~~~pDE~yfqTlL~~~--~~~~i~n~~lryIdW~-~g~~hP~~~~~~ 305 (371)
||+|||++|+||+++....+.|+.+|+ ++++|||+||||||.+. ..+.+.+.++|||||+ ++++||++++..
T Consensus 159 W~~Ltr~~v~~il~~~~~~~~~~~~~~-----~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~ 233 (244)
T PF02485_consen 159 WFSLTRDFVEYILDDPNYRPKLKKYFR-----FSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTIC 233 (244)
T ss_dssp --EEEHHHHHHHHH-HHHHHHHHHHT------TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEE
T ss_pred eeEeeHHHHHHhhhhHHHHHHHHHhhc-----CccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeee
Confidence 999999999999999888888888875 58999999999999877 3477899999999999 788999999999
Q ss_pred CCCHHHHHHH
Q 017444 306 DISSEFLKSL 315 (371)
Q Consensus 306 D~~~elL~~i 315 (371)
|++.+.|..|
T Consensus 234 ~~~~~d~~~~ 243 (244)
T PF02485_consen 234 DLGPEDLPWL 243 (244)
T ss_dssp E--GGGHHHH
T ss_pred eeCHHHHHhh
Confidence 9998777655
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=229.07 Aligned_cols=216 Identities=21% Similarity=0.273 Sum_probs=154.0
Q ss_pred CCcEEEEEEcCCCCc-hHHHHHHHhhccCCCceEEEEeCCCCCC-------CccceeeeeecC--CCccccCcccHHHHH
Q 017444 83 NPKVAFMFLTPGNLP-FENLWEKFFHGHEDRFSVYVHASSEKPM-------HVSRYFVGRDIR--SEKVAWGRISMLDAE 152 (371)
Q Consensus 83 ~~KiAfLfL~~~~~~-l~~Lw~~~f~~~~~~~~IYIHvD~k~~~-------~~~~~F~~~~i~--s~~V~WG~~SlV~Ae 152 (371)
..-+||+.+++++.. ++++....+ ++++-++||+|++++. .-.++|.+..+. +..|.|||.|++.|.
T Consensus 102 ~~~~a~~~~v~kd~~~verll~aiY---hPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~ 178 (439)
T KOG0799|consen 102 PFPAAFLRVVYKDYEQVERLLQAIY---HPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAH 178 (439)
T ss_pred ccceEEEEeecccHHHHHHHHHHHh---CCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHH
Confidence 336777777799864 555555543 3444555999999973 234455554443 478999999999999
Q ss_pred HHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceecccCCCCC--------CCCC-ccc---cc-Ccc
Q 017444 153 KRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPH--------GNGR-YSE---HM-LPE 217 (371)
Q Consensus 153 l~Ll~~AL~d-~~~~yf~LLSgsd~PL~s~~~I~~fL~~-~~~sFI~~~~~~~p~--------~~~R-y~~---~m-lp~ 217 (371)
++||+.+++- .+|+||++|||+|+||+|+.|+.+.|+. +|.+||+.....+.. ...+ |.. .+ .+-
T Consensus 179 l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~ 258 (439)
T KOG0799|consen 179 LNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVI 258 (439)
T ss_pred HHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCcccc
Confidence 9999999984 5799999999999999999999999999 999999986543211 0011 110 01 011
Q ss_pred cc-ccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCcccCCcchhhhhhccc-CCCCCCCC-ceEEEeCCC
Q 017444 218 VE-KKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMI-DPAGIANW-SVTHADWSE 294 (371)
Q Consensus 218 i~-~~~~~kGSqWfsLtR~~a~~Il~d~~~~~~F~~~c~~~~~~~~~~pDE~yfqTlL~~~-~~~~i~n~-~lryIdW~~ 294 (371)
+| ...+++||.|++|+|.+|+|++.+.... .+..+.+ ++..|||+||+|++++. ...|..+. .+|++.|..
T Consensus 259 lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~~-~ll~~~~-----~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~ 332 (439)
T KOG0799|consen 259 LPTALKLFKGSAWVSLSRAFVEYLISGNLPR-TLLMYYN-----NTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDR 332 (439)
T ss_pred CCCceEEEecceeEEEeHHHHHHHhcCccHH-HHHHHHh-----CccCcchhhhHhhhccccCCCCcccchhhcceeccc
Confidence 23 5779999999999999999999874433 3333432 47899999999999887 22333322 499999986
Q ss_pred -----CCCCCcccccCCC
Q 017444 295 -----GKWHPKAYRAQDI 307 (371)
Q Consensus 295 -----g~~hP~~~~~~D~ 307 (371)
.+.||..++..|.
T Consensus 333 ~~~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 333 KDVDPPKQHCHSLTVRDF 350 (439)
T ss_pred ccccccccCCcccccccc
Confidence 2346766666654
No 4
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=24.07 E-value=5.3e+02 Score=23.18 Aligned_cols=101 Identities=16% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCCCcEEEEEEcCCCCc-hHHHHHHHhhccCCC--ceEEEEeCCCCCCCcc--ceee---eeecCCCccccCcccHHHH
Q 017444 80 HSKNPKVAFMFLTPGNLP-FENLWEKFFHGHEDR--FSVYVHASSEKPMHVS--RYFV---GRDIRSEKVAWGRISMLDA 151 (371)
Q Consensus 80 ~~~~~KiAfLfL~~~~~~-l~~Lw~~~f~~~~~~--~~IYIHvD~k~~~~~~--~~F~---~~~i~s~~V~WG~~SlV~A 151 (371)
.+..++++.++.++++.. +++.++.+.+..... +.|+|..|...+.... .-+. ...+. .. ...+...|
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~-~~---~~~g~~~a 100 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLR-FP---ERRGKAAA 100 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEE-cC---CCCChHHH
Confidence 566789999999988654 777777776544433 7899998876642100 0000 00110 11 11234555
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHHHhc
Q 017444 152 EKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNYLMY 190 (371)
Q Consensus 152 el~Ll~~AL~d~~~~yf~LLSgsd~PL~s~~~I~~fL~~ 190 (371)
-...++.| ..+|++++-+.++|- .+.+.+.+..
T Consensus 101 ~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 101 LNRALALA----TGEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred HHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHHH
Confidence 55555544 348899998888885 5666665544
No 5
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.28 E-value=3.8e+02 Score=24.03 Aligned_cols=76 Identities=14% Similarity=0.331 Sum_probs=51.0
Q ss_pred CCchHHHHHHHhhccCCCceEEEEeCCCCCCCccceeeeeecCCCccccCcccHHHHHHHHHHHHhcCC---CCCEEEEe
Q 017444 95 NLPFENLWEKFFHGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLAHALLDP---DNQQFVLL 171 (371)
Q Consensus 95 ~~~l~~Lw~~~f~~~~~~~~IYIHvD~k~~~~~~~~F~~~~i~s~~V~WG~~SlV~Ael~Ll~~AL~d~---~~~yf~LL 171 (371)
...+.+||+++|.+..+. ||| +|..+. .-+++.++=|-.+++++ +.-..|+-
T Consensus 71 qd~iRplWrhYy~gtqgl--IFV-~Dsa~~----------------------dr~eeAr~ELh~ii~~~em~~~~~LvlA 125 (180)
T KOG0071|consen 71 QDKIRPLWRHYYTGTQGL--IFV-VDSADR----------------------DRIEEARNELHRIINDREMRDAIILILA 125 (180)
T ss_pred chhhhHHHHhhccCCceE--EEE-Eeccch----------------------hhHHHHHHHHHHHhCCHhhhcceEEEEe
Confidence 344789999999876553 444 232221 12566677777777764 34567888
Q ss_pred cCCCcc-CCChHHHHHHHhc---CCccc
Q 017444 172 SDSCIP-LHNFDYVYNYLMY---TNVSY 195 (371)
Q Consensus 172 Sgsd~P-L~s~~~I~~fL~~---~~~sF 195 (371)
.-||.| -.+..||.++|.- .++.+
T Consensus 126 NkQDlp~A~~pqei~d~leLe~~r~~~W 153 (180)
T KOG0071|consen 126 NKQDLPDAMKPQEIQDKLELERIRDRNW 153 (180)
T ss_pred cCcccccccCHHHHHHHhccccccCCcc
Confidence 999999 6888999999864 44444
No 6
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=22.94 E-value=11 Score=30.06 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=5.8
Q ss_pred CCCCchhhHHHHHHHHHHH
Q 017444 27 HLKRPIWIIAFVTFFIIFL 45 (371)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (371)
+.+|..|+.+|+.+.+||+
T Consensus 61 ~rkKrrwlwLlikl~lV~a 79 (81)
T PF14812_consen 61 PRKKRRWLWLLIKLFLVFA 79 (81)
T ss_dssp ----------TTTTHCCHC
T ss_pred ccccchhHHHHHHHHHHhe
Confidence 5667788888887666554
No 7
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=20.43 E-value=1.2e+02 Score=20.62 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=17.8
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhh
Q 017444 24 QRPHLKRPIWIIAFVTFFIIFLTG 47 (371)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~ 47 (371)
.|.+..|..|+++++.++.+-.+.
T Consensus 16 ~~~~~~k~~W~~~i~~~P~iG~i~ 39 (46)
T PF13396_consen 16 DRSPSSKILWLIVILFFPIIGPIL 39 (46)
T ss_pred CCCCchhhHHHHHHHHHHHHHHhh
Confidence 456677799998888888665544
No 8
>PTZ00021 falcipain-2; Provisional
Probab=19.95 E-value=1e+02 Score=32.57 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=38.1
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhceecCCCCCCC-----CcccccchhHHHHHHHcCCC
Q 017444 25 RPHLKRPIWIIAFVTFFIIFLTGVYVYPSGSGSL-----ASCYFFSAQVVFKEILNKPP 78 (371)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 78 (371)
+-..||.+.|+++++.+|+|.+.+.-|....-++ ...+-.++-.++..+|.+|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (489)
T PTZ00021 29 ILKGKKSLLVVLSVSAICLVAGSAFYFTRTEKTSGLFTNSLDENNNDDYIINSLLKSPN 87 (489)
T ss_pred hhcccccEEEehHHHHHHHHhheEEEEccCCCCCcccccccccccCchHHHHHHhhCCC
Confidence 3455778999999999999999998887764332 01222346677888888774
No 9
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=18.99 E-value=96 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhceecC
Q 017444 34 IIAFVTFFIIFLTGVYVYP 52 (371)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (371)
..+++.++++|++..|+-.
T Consensus 11 t~Lfi~iPt~FLiilYvqT 29 (33)
T TIGR03038 11 TLLFILVPTVFLLILYIQT 29 (33)
T ss_pred HHHHHHHHHHHHHHHheec
Confidence 4567888899999988743
No 10
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=17.88 E-value=4.5e+02 Score=22.60 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=27.1
Q ss_pred CcEEEEEEcCCCC-c-hHHHHHHHhhccCCCceEEEEeCCCC
Q 017444 84 PKVAFMFLTPGNL-P-FENLWEKFFHGHEDRFSVYVHASSEK 123 (371)
Q Consensus 84 ~KiAfLfL~~~~~-~-l~~Lw~~~f~~~~~~~~IYIHvD~k~ 123 (371)
|++++++.+++.. . +++..+.+++.....+.|.|--|...
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~ 42 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST 42 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC
Confidence 4688888887764 3 67777777765555667766655543
Done!