Query 017444
Match_columns 371
No_of_seqs 222 out of 651
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 2.3E-51 8E-56 411.3 15.5 246 80-369 80-381 (391)
2 2fy7_A Beta-1,4-galactosyltran 23.5 2.3E+02 0.0078 26.0 7.9 80 82-181 63-146 (287)
3 2lk9_A Bone marrow stromal ant 20.2 40 0.0014 21.5 1.2 24 27-50 2-25 (35)
4 2l8s_A Integrin alpha-1; trans 17.9 71 0.0024 22.5 2.2 18 29-46 6-23 (54)
5 2knc_A Integrin alpha-IIB; tra 15.9 59 0.002 22.9 1.4 17 29-45 9-25 (54)
6 2k1a_A Integrin alpha-IIB; sin 15.1 66 0.0023 21.4 1.4 18 29-46 7-24 (42)
7 3arc_M Photosystem II reaction 14.7 69 0.0024 20.7 1.4 20 34-53 11-30 (36)
8 1qg8_A Protein (spore coat pol 11.1 6.9E+02 0.024 20.9 9.6 109 84-197 1-123 (255)
9 3ukw_C Bimax1 peptide; arm rep 10.2 85 0.0029 18.5 0.7 10 21-31 2-11 (28)
10 2crg_A Metastasis associated p 10.1 91 0.0031 22.7 1.0 37 150-188 13-50 (70)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=2.3e-51 Score=411.29 Aligned_cols=246 Identities=13% Similarity=0.193 Sum_probs=194.6
Q ss_pred CCCCCcEEEEEEcCCCCchHHHHHHHhhc-cCCCceEEEEeCCCCCCC-------ccceeeeeec--CCCccccCcccHH
Q 017444 80 HSKNPKVAFMFLTPGNLPFENLWEKFFHG-HEDRFSVYVHASSEKPMH-------VSRYFVGRDI--RSEKVAWGRISML 149 (371)
Q Consensus 80 ~~~~~KiAfLfL~~~~~~l~~Lw~~~f~~-~~~~~~IYIHvD~k~~~~-------~~~~F~~~~i--~s~~V~WG~~SlV 149 (371)
.+.++||||||++|++. ++|++++++ .++++.+|||+|+|++.. ..+.|.+..+ ++..|.|||+|||
T Consensus 80 ~e~~~kiAflil~h~d~---~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v 156 (391)
T 2gak_A 80 EEVGFPIAYSIVVHHKI---EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRV 156 (391)
T ss_dssp HHHTSCEEEEEEECSCH---HHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHH
T ss_pred cccCCCEEEEEEecCCH---HHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHH
Confidence 45679999999999976 356777764 467788899999998631 2233555554 2689999999999
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEecCCCccCCChHHHHHHHhc-CCccceecccCCCCCCCCCccc---------------
Q 017444 150 DAEKRLLAHALLD-PDNQQFVLLSDSCIPLHNFDYVYNYLMY-TNVSYVDCFEDPGPHGNGRYSE--------------- 212 (371)
Q Consensus 150 ~Ael~Ll~~AL~d-~~~~yf~LLSgsd~PL~s~~~I~~fL~~-~~~sFI~~~~~~~p~~~~Ry~~--------------- 212 (371)
+||++||+.||++ .+|+|||||||+|+||+|+++|++||+. .|+|||++..+++.. ..|+..
T Consensus 157 ~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~-~~R~~~~~~~~~~~l~~~~~~ 235 (391)
T 2gak_A 157 KADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK-EERWKKRYAVVDGKLTNTGIV 235 (391)
T ss_dssp HHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGG-SHHHHEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCccc-ccceEeeeeccccceeeeccc
Confidence 9999999999985 5999999999999999999999999998 899999998765421 123211
Q ss_pred -ccCccccccccccccceeeecHHHHHHHHhChHHHHHHHhhccCCCCCCcccCCcchhhhhhcccCC-CCC--------
Q 017444 213 -HMLPEVEKKDFRKGSQWFTLKRQHAMIIMADSLYYTKFKHYCKPNMEGRNCYADEHYLPTLFHMIDP-AGI-------- 282 (371)
Q Consensus 213 -~mlp~i~~~~~~kGSqWfsLtR~~a~~Il~d~~~~~~F~~~c~~~~~~~~~~pDE~yfqTlL~~~~~-~~i-------- 282 (371)
+++|. ..++++|||||+|||++|++|++|.. .+.|..||+ ++|+|||+|||||+++.+. +++
T Consensus 236 k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k-----~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~ 307 (391)
T 2gak_A 236 KAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQ-----DTYSPDEFLWATIQRIPEVPGSFPSSNKYDL 307 (391)
T ss_dssp CCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHT-----TSSSGGGTHHHHHTTSTTSTTCCCSSGGGCB
T ss_pred ccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHc-----CCcCCchhHHHHHhhccCCCCcccccccccc
Confidence 12231 47899999999999999999999865 567778887 5899999999999977542 222
Q ss_pred --CCCceEEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHhcccccccccccccccccccccccCCCC
Q 017444 283 --ANWSVTHADWS-------EGKWHPK----------AYRAQDISSEFLKSLAAIDETFHITSDEQKKVTIMPCMWNGMK 343 (371)
Q Consensus 283 --~n~~lryIdW~-------~g~~hP~----------~~~~~D~~~elL~~i~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 343 (371)
++.++|||+|+ +|++||. +|+.+|+ ..|++
T Consensus 308 ~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~~-------------------------- 356 (391)
T 2gak_A 308 SDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWMLR-------------------------- 356 (391)
T ss_dssp CTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHTT--------------------------
T ss_pred ccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHHh--------------------------
Confidence 46789999997 3445777 7888886 34554
Q ss_pred CCcceEEecCCcchHHHHHHhhhhcc
Q 017444 344 RPCYLFARKFNPEALDKLVFLFVNYT 369 (371)
Q Consensus 344 ~~~~LFARKF~~~~~~~ll~ll~~~~ 369 (371)
+++||||||++++++.+++.++++.
T Consensus 357 -s~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 357 -QHHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp -SCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred -CCCceEEccCCccCHHHHHHHHHHH
Confidence 2699999999999999999988653
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=23.47 E-value=2.3e+02 Score=25.96 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=50.2
Q ss_pred CCCcEEEEEEcCCCC-chHHHHHHHh---hccCCCceEEEEeCCCCCCCccceeeeeecCCCccccCcccHHHHHHHHHH
Q 017444 82 KNPKVAFMFLTPGNL-PFENLWEKFF---HGHEDRFSVYVHASSEKPMHVSRYFVGRDIRSEKVAWGRISMLDAEKRLLA 157 (371)
Q Consensus 82 ~~~KiAfLfL~~~~~-~l~~Lw~~~f---~~~~~~~~IYIHvD~k~~~~~~~~F~~~~i~s~~V~WG~~SlV~Ael~Ll~ 157 (371)
..++|+.+|-+++.. .+.+.++.+. +.....+.|+|=-| ..+ ++++...|.-..+.
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdd-s~d-------------------~~f~~a~a~N~G~~ 122 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQ-AGD-------------------TIFNRAKLLNVGFQ 122 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-CSS-------------------SCCCHHHHHHHHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEe-CCC-------------------CccchhhhhhhHHH
Confidence 457999999997764 4777777776 34456677764222 111 12223333333444
Q ss_pred HHhcCCCCCEEEEecCCCccCCCh
Q 017444 158 HALLDPDNQQFVLLSDSCIPLHNF 181 (371)
Q Consensus 158 ~AL~d~~~~yf~LLSgsd~PL~s~ 181 (371)
+|++....+|++++-+.|+|....
T Consensus 123 ~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 123 EALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHSCCCEEEEECTTEEESBTT
T ss_pred HHHHhCCCCEEEEECCCcccCCCc
Confidence 555556779999999999998764
No 3
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=20.22 E-value=40 Score=21.45 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=15.5
Q ss_pred CCCCchhhHHHHHHHHHHHhhcee
Q 017444 27 HLKRPIWIIAFVTFFIIFLTGVYV 50 (371)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~ 50 (371)
++|-|.|+.+++.++++.+..+-|
T Consensus 2 RcKL~lg~Gvl~LLviV~LgV~LI 25 (35)
T 2lk9_A 2 RSKLLLGIGILVLLIIVILGVPLI 25 (35)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeecccHHHHHHHHHhcchhe
Confidence 367788888888888776655544
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.86 E-value=71 Score=22.48 Aligned_cols=18 Identities=28% Similarity=0.750 Sum_probs=11.0
Q ss_pred CCchhhHHHHHHHHHHHh
Q 017444 29 KRPIWIIAFVTFFIIFLT 46 (371)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~ 46 (371)
.-|.|||++.++.-+.++
T Consensus 6 ~vp~WiIi~svl~GLLLL 23 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLL 23 (54)
T ss_dssp CCCTHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHH
Confidence 458998876555444433
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.91 E-value=59 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=10.2
Q ss_pred CCchhhHHHHHHHHHHH
Q 017444 29 KRPIWIIAFVTFFIIFL 45 (371)
Q Consensus 29 ~~~~~~~~~~~~~~~~~ 45 (371)
.-|.||+++.++.-+.+
T Consensus 9 ~vp~wiIi~svl~GLll 25 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLL 25 (54)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH
Confidence 35899887655543333
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=15.11 E-value=66 Score=21.41 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=11.0
Q ss_pred CCchhhHHHHHHHHHHHh
Q 017444 29 KRPIWIIAFVTFFIIFLT 46 (371)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~ 46 (371)
.-|.||+++.++.-+.++
T Consensus 7 ~vp~wiIi~s~l~GLllL 24 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLL 24 (42)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 358998876655444443
No 7
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=14.72 E-value=69 Score=20.66 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhhceecCC
Q 017444 34 IIAFVTFFIIFLTGVYVYPS 53 (371)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (371)
..+++.++++|++..|+=..
T Consensus 11 t~Lfi~iPt~FLlilYvqT~ 30 (36)
T 3arc_M 11 TALFVLVPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheec
Confidence 45678888999999887543
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=11.06 E-value=6.9e+02 Score=20.92 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCC-CchHHHHHHHhhccCCCceEEEEeCCCCCC---------CccceeeeeecCCC--ccccCcccHHHH
Q 017444 84 PKVAFMFLTPGN-LPFENLWEKFFHGHEDRFSVYVHASSEKPM---------HVSRYFVGRDIRSE--KVAWGRISMLDA 151 (371)
Q Consensus 84 ~KiAfLfL~~~~-~~l~~Lw~~~f~~~~~~~~IYIHvD~k~~~---------~~~~~F~~~~i~s~--~V~WG~~SlV~A 151 (371)
|+|+.+|.+++. ..+++.++.+.+.....+.|.|=-|...+. ....+-..+. +.. ...+...+...|
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~-~~~~~~~~~~n~G~~~a 79 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQS-DISGVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEEC-CCCSHHHHHSSCHHHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEec-ccccccccccccCHHHH
Confidence 579999999665 448888888876666677777755544321 0011110000 000 000124455566
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc-CCcccee
Q 017444 152 EKRLLAHALLDPDNQQFVLLSDSCIPLHN-FDYVYNYLMY-TNVSYVD 197 (371)
Q Consensus 152 el~Ll~~AL~d~~~~yf~LLSgsd~PL~s-~~~I~~fL~~-~~~sFI~ 197 (371)
--.+++.| +.+|+++|-+.|++... .+.+.+.+.. .+...+.
T Consensus 80 ~N~gi~~a----~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~ 123 (255)
T 1qg8_A 80 INQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIY 123 (255)
T ss_dssp HHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHc----CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEE
Confidence 66666655 45789999888887432 2334444554 3444443
No 9
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=10.18 E-value=85 Score=18.49 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=2.2
Q ss_pred cccCCCCCCCc
Q 017444 21 YRQQRPHLKRP 31 (371)
Q Consensus 21 ~~~~~~~~~~~ 31 (371)
+| .|.|.|||
T Consensus 2 sr-rrrprkrp 11 (28)
T 3ukw_C 2 SR-RRRPRKRP 11 (28)
T ss_dssp ------CCCCC
T ss_pred cc-ccccccCC
Confidence 44 34444444
No 10
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=10.07 E-value=91 Score=22.66 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhc-CCCCCEEEEecCCCccCCChHHHHHHH
Q 017444 150 DAEKRLLAHALL-DPDNQQFVLLSDSCIPLHNFDYVYNYL 188 (371)
Q Consensus 150 ~Ael~Ll~~AL~-d~~~~yf~LLSgsd~PL~s~~~I~~fL 188 (371)
+.|..++.+||. .+.+ |..|+..-+|-++..++.+|.
T Consensus 13 ~eE~~~Fe~~l~~yGKd--f~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 13 ASEACLFEEALEKYGKD--FNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp HHHHHHHHHHHHHTCSC--HHHHHHTTCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc--HHHHHHHHcCCCCHHHHHHHH
Confidence 567889999987 4543 888885569999999999985
Done!