Query 017444
Match_columns 371
No_of_seqs 222 out of 651
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 14:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017444.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017444hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 63.0 26 0.0019 28.5 10.5 108 84-196 1-122 (255)
2 d2qalc1 d.52.3.1 (C:1-105) Rib 13.4 43 0.0031 24.7 2.1 30 225-254 17-46 (105)
3 d1iioa_ a.39.4.1 (A:) Hypothet 12.6 22 0.0016 25.5 0.2 21 170-190 60-80 (84)
4 d1c9fa_ d.15.2.1 (A:) Caspase- 11.5 32 0.0023 24.8 0.7 14 261-275 55-68 (87)
5 d1fo8a_ c.68.1.10 (A:) N-acety 11.4 3.8E+02 0.027 23.3 8.5 102 86-187 4-122 (343)
6 d2uubc1 d.52.3.1 (C:2-106) Rib 11.2 31 0.0023 25.5 0.7 30 225-254 17-46 (105)
7 d1r5la1 a.5.3.1 (A:25-90) Alph 11.2 20 0.0014 24.3 -0.5 17 347-363 31-47 (66)
8 d1n26a2 b.1.2.1 (A:94-195) Int 10.7 34 0.0025 25.2 0.7 21 336-356 19-44 (102)
9 d1ibxa_ d.15.2.1 (A:) Caspase- 10.4 36 0.0026 24.2 0.7 15 261-276 52-66 (81)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 9.5 1.1E+02 0.0077 17.8 2.4 10 30-39 2-11 (34)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=63.03 E-value=26 Score=28.49 Aligned_cols=108 Identities=9% Similarity=0.104 Sum_probs=63.1
Q ss_pred CcEEEEEEcCCCC-chHHHHHHHhhccCCCceEEEEeCCCCCCC---------ccc--eeeeeecCCCccccCcccHHHH
Q 017444 84 PKVAFMFLTPGNL-PFENLWEKFFHGHEDRFSVYVHASSEKPMH---------VSR--YFVGRDIRSEKVAWGRISMLDA 151 (371)
Q Consensus 84 ~KiAfLfL~~~~~-~l~~Lw~~~f~~~~~~~~IYIHvD~k~~~~---------~~~--~F~~~~i~s~~V~WG~~SlV~A 151 (371)
|||+.++-+++.. .+++.++.+.....+.+.|+|.-|...+-. ... ++....+ .+...=...+.-.|
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~-~~~~~~~~~g~~~a 79 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDIS-GVKERTEKTRYAAL 79 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCC-SHHHHHSSCHHHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhccccccccccc-ccccccccchhccc
Confidence 6899999997654 488888888877778899999988665310 011 1111100 00000023334344
Q ss_pred HHHHHHHHhcCCCCCEEEEecCCCccCCC-hHHHHHHHhc-CCccce
Q 017444 152 EKRLLAHALLDPDNQQFVLLSDSCIPLHN-FDYVYNYLMY-TNVSYV 196 (371)
Q Consensus 152 el~Ll~~AL~d~~~~yf~LLSgsd~PL~s-~~~I~~fL~~-~~~sFI 196 (371)
--.+++.| +.+|+++|-+.|++..+ .+.+.+++.. .+..++
T Consensus 80 ~N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 80 INQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred cccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 44445444 56899999999998654 3334455554 445555
No 2
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.40 E-value=43 Score=24.70 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=24.3
Q ss_pred cccceeeecHHHHHHHHhChHHHHHHHhhc
Q 017444 225 KGSQWFTLKRQHAMIIMADSLYYTKFKHYC 254 (371)
Q Consensus 225 kGSqWfsLtR~~a~~Il~d~~~~~~F~~~c 254 (371)
-.|.||+=.++.+++|.+|........+++
T Consensus 17 ~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2qalc1 17 WNSTWFANTKEFADNLDSDFKVRQYLTKEL 46 (105)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEcCCccchHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999988766555544
No 3
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.58 E-value=22 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=17.9
Q ss_pred EecCCCccCCChHHHHHHHhc
Q 017444 170 LLSDSCIPLHNFDYVYNYLMY 190 (371)
Q Consensus 170 LLSgsd~PL~s~~~I~~fL~~ 190 (371)
+|+++|+|+++.+++.+-+..
T Consensus 60 ~l~~~DFP~ksae~lad~ii~ 80 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHHH
Confidence 588999999999999887653
No 4
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.51 E-value=32 Score=24.81 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=10.5
Q ss_pred CcccCCcchhhhhhc
Q 017444 261 RNCYADEHYLPTLFH 275 (371)
Q Consensus 261 ~~~~pDE~yfqTlL~ 275 (371)
-|.+ ||.|||||=.
T Consensus 55 GT~V-dEeYF~tLp~ 68 (87)
T d1c9fa_ 55 GTEV-TDDCFPGLPN 68 (87)
T ss_dssp TCCB-CTTSCSSCCT
T ss_pred CcEe-cHHHHhcCCC
Confidence 3566 8889999853
No 5
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.38 E-value=3.8e+02 Score=23.28 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCchHHHHHHHhhc--cCCCceEEEEeCCCCCC------C-ccceeeeeec--CCCcc------ccCcccH
Q 017444 86 VAFMFLTPGNLPFENLWEKFFHG--HEDRFSVYVHASSEKPM------H-VSRYFVGRDI--RSEKV------AWGRISM 148 (371)
Q Consensus 86 iAfLfL~~~~~~l~~Lw~~~f~~--~~~~~~IYIHvD~k~~~------~-~~~~F~~~~i--~s~~V------~WG~~Sl 148 (371)
|+-+++|.+...+.+.++.+.+. ..+.+.|||-.|...+. . ...+-..... ....+ .=|.+.+
T Consensus 4 iPVlv~a~NRP~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~gi 83 (343)
T d1fo8a_ 4 IPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKI 83 (343)
T ss_dssp CCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHH
T ss_pred ccEEEEEcCHHHHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHHHHHHhcCCccccceecchhhcccchhHH
Confidence 57788885544689999999764 34567899999964321 0 1111111110 00111 1233445
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEecCCCccCCChHHHHHH
Q 017444 149 LDAEKRLLAHALLDPDNQQFVLLSDSCIPLHNFDYVYNY 187 (371)
Q Consensus 149 V~Ael~Ll~~AL~d~~~~yf~LLSgsd~PL~s~~~I~~f 187 (371)
-+.-...|..++....+++.|.|=+.+.|=..|=..-+.
T Consensus 84 arhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~ 122 (343)
T d1fo8a_ 84 ARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHH
Confidence 555556666667666789999999998886665443333
No 6
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=11.23 E-value=31 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.6
Q ss_pred cccceeeecHHHHHHHHhChHHHHHHHhhc
Q 017444 225 KGSQWFTLKRQHAMIIMADSLYYTKFKHYC 254 (371)
Q Consensus 225 kGSqWfsLtR~~a~~Il~d~~~~~~F~~~c 254 (371)
-.|.||+=.++.+++|.+|....+.+.+++
T Consensus 17 w~S~W~a~~~~y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2uubc1 17 WESRWYAGKKQYRHLLLEDQRIRGLLEKEL 46 (105)
T ss_dssp CSCBCCCCTTTTTHHHHHHHHHHHHHHHST
T ss_pred CCceEcCChhhhHHHHHHHHHHHHHHHhhc
Confidence 469999999999999999988776666544
No 7
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.15 E-value=20 Score=24.28 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.7
Q ss_pred ceEEecCCcchHHHHHH
Q 017444 347 YLFARKFNPEALDKLVF 363 (371)
Q Consensus 347 ~LFARKF~~~~~~~ll~ 363 (371)
+|-||||+.+....+++
T Consensus 31 FLRarkf~~~ka~~~l~ 47 (66)
T d1r5la1 31 FLRARDFDLDLAWRLLK 47 (66)
T ss_dssp HHHHTTTCHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHH
Confidence 79999999987776554
No 8
>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.73 E-value=34 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=15.8
Q ss_pred ccccCCCC-----CCcceEEecCCcc
Q 017444 336 PCMWNGMK-----RPCYLFARKFNPE 356 (371)
Q Consensus 336 ~c~~~g~~-----~~~~LFARKF~~~ 356 (371)
.|-|.... ..|+|+.|||-.+
T Consensus 19 ~CEW~p~~~psp~t~avLlvRkf~~~ 44 (102)
T d1n26a2 19 VCEWGPRSTPSLTTKAVLLVRKFQNS 44 (102)
T ss_dssp EEEECCSSCCCTTCEEEEEEEEESSS
T ss_pred eeeecCCCCCCCCceEEEEEEeccCC
Confidence 48887663 4589999999655
No 9
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.36 E-value=36 Score=24.15 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=10.7
Q ss_pred CcccCCcchhhhhhcc
Q 017444 261 RNCYADEHYLPTLFHM 276 (371)
Q Consensus 261 ~~~~pDE~yfqTlL~~ 276 (371)
-|.+ ||.|||||=.+
T Consensus 52 GT~V-~EeYF~tLp~n 66 (81)
T d1ibxa_ 52 GTEL-TEDYFPSVPDN 66 (81)
T ss_dssp CSCC-CSSSCSSCCSC
T ss_pred CcEe-eHHHHhcCCCC
Confidence 3556 78899998643
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.46 E-value=1.1e+02 Score=17.84 Aligned_cols=10 Identities=50% Similarity=1.115 Sum_probs=6.6
Q ss_pred CchhhHHHHH
Q 017444 30 RPIWIIAFVT 39 (371)
Q Consensus 30 ~~~~~~~~~~ 39 (371)
-|.|++..+.
T Consensus 2 iPLWlv~tv~ 11 (34)
T d2axtj1 2 IPLWIVATVA 11 (34)
T ss_dssp CCHHHHHHHH
T ss_pred CcEEEeeehh
Confidence 4789876543
Done!