BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017446
(371 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330 OS=Arabidopsis thaliana
GN=At2g24330 PE=2 SV=1
Length = 408
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/317 (61%), Positives = 231/317 (72%), Gaps = 15/317 (4%)
Query: 11 EKKDSKAV-----EKK---RKGIISRLWNGIFRLKGDDFEKRLQYISKEEAAILARVKRR 62
EK DS V EKK RKG+ SRLWN IFR++GDDFEKRL+ ISKEEA + R+KRR
Sbjct: 18 EKNDSAVVLSASGEKKTTKRKGLFSRLWNAIFRVRGDDFEKRLKNISKEEATVRNRMKRR 77
Query: 63 SQTWRRMSRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRALQVLPIFLLPGLSALAYSA 122
S T R R+LI F+V FEVIAV YAIMTTR +L+WK R+ ++LP+FLLP ++ L YS+
Sbjct: 78 SITRRNFIRNLIAFSVFFEVIAVSYAIMTTRDEDLDWKLRSFRILPMFLLPAVAFLLYSS 137
Query: 123 FVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPDPAAKAAAATVL 182
V F RMCDR+DQ TLE+L+ E KI+ELKERTNYY TQQLIQRYDPDPAAKAAAATVL
Sbjct: 138 LVGFWRMCDRRDQHTLEKLQAEMLGKINELKERTNYYITQQLIQRYDPDPAAKAAAATVL 197
Query: 183 ASKLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGGAGSTPLHHSD 242
ASKLGA+SGL VFVGDES G +N S GLRNRKQ R A +TP+HHSD
Sbjct: 198 ASKLGAESGLKVFVGDESQLEPTAGKNN---AKHSGGLRNRKQTNTRGNSAETTPIHHSD 254
Query: 243 EETSSSFGSE---GPEHNQLVVNHHY-PQVSTMHDGGWIARIAAILVGDDPSQSYALICG 298
E++ S SE G E NQ +V HY PQ HDG WI+RIAA+LVG+DPSQSYALICG
Sbjct: 255 NESNHSGTSERITGTEQNQQMVFEHYNPQEYAAHDGSWISRIAALLVGEDPSQSYALICG 314
Query: 299 NCHMHNGESIRKDIPTL 315
NC MHNG + ++D P +
Sbjct: 315 NCRMHNGLARKEDFPYI 331
>sp|Q1KKR9|LNPB_TAKRU Protein lunapark-B OS=Takifugu rubripes GN=lnpb PE=3 SV=1
Length = 358
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 9/223 (4%)
Query: 98 NWKTRALQVLPIFLLPGLSALAYSAFVS-FNRMCDRKDQKTLERLRVERKAKIDELKERT 156
W R LP F+ P L + F++ +R + K LE L+ +K ++E+ E
Sbjct: 69 QWLLRLAMALPFFIYPVLVWFIRRFLIFLFSKRSERNNDK-LEDLKATKKKILEEVMETE 127
Query: 157 NYYTTQQLIQRYDPDPAAKAA-AATVLASKLGADSGLNVFVGDESNFNVPLGNSNDV--- 212
Y + +++R+DPD K AT + ++ +G + + ++P+G V
Sbjct: 128 TYKNAKAILERFDPDAKKKPELEATPVRPQMTPGAGQELRQRGVALRHMPMGTPVAVTPG 187
Query: 213 ---EVMPSSGLRNRKQLQPRSGGAGSTPLHHSDEETSSSFGSEGPEHNQLVVNHHYPQVS 269
+ P R L G + L S + T S GS P +
Sbjct: 188 ARPPLGPGGTPVERVPLSAPGGPPERSGLAASVQMTPRSLGSPVPGVGMHPPGPPLARPV 247
Query: 270 TMHDGGWIARIAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
D G + R+ LVGD P YALIC C HNG +++++
Sbjct: 248 LPKDRGAVDRVIEYLVGDGPQNRYALICQQCFSHNGMALKEEF 290
>sp|Q6PFM4|LNPB_DANRE Protein lunapark-B OS=Danio rerio GN=lnpb PE=2 SV=2
Length = 402
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 94/229 (41%), Gaps = 20/229 (8%)
Query: 98 NWKTRALQVLPIFLLPGLSALAYSAFVS-FNRMCDRKDQKTLERLRVERKAKIDELKERT 156
W R + LP+ P L L + F++ +R + K LE L+ +++ ++E+ E
Sbjct: 69 QWGARLITALPLLAFPALVLLLRKMLIFLFSKRTERNNDK-LEDLKTQKRKILEEVMETE 127
Query: 157 NYYTTQQLIQRYDPDPAAKA-AAATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVM 215
Y + +++R+DP+ KA A AT + + G + ++ + V
Sbjct: 128 TYKNAKLILERFDPESKKKAEAEATPVRPHMTPRPGQEL-----RQRHIAMATPGPVLGP 182
Query: 216 PSSG---LRNRKQLQPRSG--GAGSTPLHHSDEETSSSFG-------SEGPEHNQLVVNH 263
S G LR P G G+ STP S ET S GP
Sbjct: 183 MSPGTTPLRTAPGGPPEKGLAGSASTPAGASQAETPQQMMRRSMNPYSPGPGSGMRPPGP 242
Query: 264 HYPQVSTMHDGGWIARIAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
+ + G + R+ LVGD P YALIC C HNG +++++
Sbjct: 243 PLARPILPRERGAVDRVIEYLVGDGPQNRYALICQQCFSHNGMALKEEF 291
>sp|Q7TQ95|LNP_MOUSE Protein lunapark OS=Mus musculus GN=Lnp PE=1 SV=1
Length = 425
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 9/273 (3%)
Query: 45 LQYISKEEAAILARVKRRSQTWRRM-SRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRA 103
L+ I KE A L + ++Q +++ LII++ + + I+ + + R
Sbjct: 18 LENIDKEIQA-LEEFREKNQRLQKLWVGRLIIYSSILYLFTC--LIVYLWYLPDEFTARL 74
Query: 104 LQVLPIFLLPGLSALAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQ 163
+ LP F P + + + F ++ + L+ L+ ++K ++E+ E+ Y T +
Sbjct: 75 VMTLPFFAFPLIIWTLRTVLIFFFSKRTERNNEALDDLKSQKKKILEEVMEKETYKTAKL 134
Query: 164 LIQRYDPDPA-AKAAAATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRN 222
+++R+DPD AK + + A G + + N+ ++ + P G +
Sbjct: 135 ILERFDPDSKKAKEFEPPSAGAAVTAKPGQEIRQRTAAQRNLSPAPASSSQGPPPQGPVS 194
Query: 223 RKQLQPRSGGAGSTPLHHSDEETSSSFGSEGPEHNQLVVNHHYPQVS---TMHDGGWIAR 279
+ + G P GS + ++ P ++ + G + R
Sbjct: 195 PGPAK-DASAPGGPPERTVAPALPRRLGSPATSVPGMGLHPPGPPLARPILPRERGALDR 253
Query: 280 IAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
I LVGD P YALIC C HNG +++++
Sbjct: 254 IVEYLVGDGPQNRYALICQQCFSHNGMALKEEF 286
>sp|Q5R891|LNP_PONAB Protein lunapark OS=Pongo abelii GN=LNP PE=2 SV=1
Length = 428
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 114/304 (37%), Gaps = 66/304 (21%)
Query: 45 LQYISKEEAAILARVKRRSQTWRRMS-RHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRA 103
L+ I KE A L + ++Q +++ LI+++ V + I+ + + R
Sbjct: 18 LESIDKEIQA-LEEFREKNQRLQKLRVGRLILYSSVLYLFTC--LIVYLWYLPDEFTARL 74
Query: 104 LQVLPIFLLPGLSALAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQ 163
LP F P + + + F ++ + L+ L+ +RK ++E+ E+ Y T +
Sbjct: 75 AMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKL 134
Query: 164 LIQRYDPDPAAKAAAATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRNR 223
+++R+DPD +K A S GA V P +R R
Sbjct: 135 ILERFDPD--SKKAKECEPPSAGGA-----------------------VTARPGQEIRQR 169
Query: 224 KQLQ---------PRSGGAGSTPLHHSDEETSSSFGSEGPEHNQL-------VVNHHYPQ 267
Q P G P+ + SS+ G GP + V+ H
Sbjct: 170 TAAQRNLSPTPASPNQGPPPQVPVSPGPPKDSSAPG--GPPERTVTPALSSNVLPRHLGS 227
Query: 268 VSTMHDG-------------------GWIARIAAILVGDDPSQSYALICGNCHMHNGESI 308
+T G G + RI LVGD P YALIC C HNG ++
Sbjct: 228 PATSVPGMGLHPPGPPLARPILPRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMAL 287
Query: 309 RKDI 312
+++
Sbjct: 288 KEEF 291
>sp|Q9C0E8|LNP_HUMAN Protein lunapark OS=Homo sapiens GN=LNP PE=1 SV=2
Length = 428
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 22/282 (7%)
Query: 45 LQYISKEEAAILARVKRRSQTWRRM-SRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRA 103
L+ I KE A L + ++Q +++ LI+++ V + I+ + + R
Sbjct: 18 LESIDKEIQA-LEEFREKNQRLQKLWVGRLILYSSVLYLFTC--LIVYLWYLPDEFTARL 74
Query: 104 LQVLPIFLLPGLSALAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQ 163
LP F P + + + F ++ + L+ L+ +RK ++E+ E+ Y T +
Sbjct: 75 AMTLPFFAFPLIIWSIRTVIIFFFSKRTERNNEALDDLKSQRKKILEEVMEKETYKTAKL 134
Query: 164 LIQRYDPDPA-AKAAAATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRN 222
+++R+DPD AK + + A G + + N+ + P+ G
Sbjct: 135 ILERFDPDSKKAKECEPPSAGAAVTARPGQEIRQRTAAQRNL-----SPTPASPNQGPPP 189
Query: 223 RKQLQPRSGGAGSTPLHHSDEETSSSFGSE-------GPEHNQLVVNHHYPQVSTMH--- 272
+ + P S P + + + S P + + H P
Sbjct: 190 QVPVSPGPPKDSSAPGGPPERTVTPALSSNVLPRHLGSPATSVPGMGLHPPGPPLARPIL 249
Query: 273 --DGGWIARIAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
+ G + RI LVGD P YALIC C HNG +++++
Sbjct: 250 PRERGALDRIVEYLVGDGPQNRYALICQQCFSHNGMALKEEF 291
>sp|Q28HF6|LNP_XENTR Protein lunapark OS=Xenopus tropicalis GN=lnp PE=2 SV=1
Length = 423
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 17/201 (8%)
Query: 126 FNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPDP-AAKAAAATVLAS 184
F+R +R + LE L+ E+K ++E+ E+ Y + +++R+DPD K V
Sbjct: 98 FSRRTERNN-DALELLKTEKKKILEEVMEKETYKAAKLILERFDPDSRKIKELELPVPGP 156
Query: 185 KLGADSGLNVFVGDESNFNV----PLGNSNDVEVMPSSGLRNRKQLQPRSGGAGSTPLHH 240
+ G ++ + N+ P+ + +P L LQ R A P
Sbjct: 157 PITPRPGQDLRQRTAAQRNISVSTPVNPGQESPQVPGL-LAATPSLQ-RDTSAPGGPPER 214
Query: 241 SDEETSSS------FGSEGPEHNQLVVNHHYPQVSTM---HDGGWIARIAAILVGDDPSQ 291
S + T S GS + + ++ P ++ + G + R+ LVGD P
Sbjct: 215 SVQPTPQSNILQRRPGSPATTVSGMAIHPPGPPLARPILPRERGAMDRVIEYLVGDGPQN 274
Query: 292 SYALICGNCHMHNGESIRKDI 312
YALIC C HNG +++++
Sbjct: 275 RYALICQQCFSHNGMALKEEF 295
>sp|Q6DFJ8|LNP_XENLA Protein lunapark OS=Xenopus laevis GN=lnp PE=2 SV=1
Length = 440
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 13/199 (6%)
Query: 126 FNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPDP-AAKAAAATVLAS 184
F+R +R + LE L+ E+K ++E+ E+ Y + +++R+DPD K V
Sbjct: 98 FSRRTERNN-DALELLKAEKKKILEEVMEKETYKAAKIILERFDPDSRKIKELELPVPGP 156
Query: 185 KLGADSGLNVFVGDESNFNVPLGNS-NDVEVMPS-SGLRNRKQLQPRSGGAGSTPLHHSD 242
+ G ++ + N+ + N + P SGL R A P S
Sbjct: 157 PITPRPGQDLRQRTAAQRNISVSTPVNPGQGSPQVSGLLAATPALQRDTSAPGGPPERSV 216
Query: 243 EETSSS------FGSEGPEHNQLVVNHHYPQVSTM---HDGGWIARIAAILVGDDPSQSY 293
+ T S GS + + ++ P ++ + G + R+ LVGD P Y
Sbjct: 217 QPTPQSNILQRRPGSPATAVSGMALHPPGPPLARPILPRERGAMDRVIEYLVGDGPQNRY 276
Query: 294 ALICGNCHMHNGESIRKDI 312
ALIC C HNG +++++
Sbjct: 277 ALICQQCFSHNGMALKEEF 295
>sp|Q7ZU80|LNPA_DANRE Protein lunapark-A OS=Danio rerio GN=lnpa PE=2 SV=1
Length = 393
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 275 GWIARIAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
G + R+ LVGD P YALIC C HNG +++++
Sbjct: 247 GAVDRVIEYLVGDGPQNRYALICQQCLSHNGMALKEEF 284
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 126 FNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPD 171
+N+ +R ++K LE L+ E+K ++++ E Y + +++R+DPD
Sbjct: 98 YNKRTERNNEK-LEELKAEKKKILEQVMETETYKNAKLILERFDPD 142
>sp|Q1KKT4|LNPA_TAKRU Protein lunapark-A OS=Takifugu rubripes GN=lnpa PE=3 SV=1
Length = 348
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 48/216 (22%)
Query: 126 FNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPDPAAKAA-AATVLAS 184
F R ++ + K LE L+ +++ ++++ E Y + +++R+DP+ K +T +
Sbjct: 96 FARRTEKNNFK-LEDLKAQKRKILEDVMETETYKNAKLILERFDPESKKKTDFDSTPVGP 154
Query: 185 KLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGGAGSTPLHHSDE- 243
++ G L + N V P + + + SG A PL
Sbjct: 155 QMTPKPGQE------------LRHRNVVPQTPPASVNSA------SGAAARPPLASGPAY 196
Query: 244 --ETSSSFGSEGPEHNQLVVNHHY-------------PQVSTMHDG------------GW 276
+S S PE N L + P V G G
Sbjct: 197 PGRSSHSAPGGPPERNLLAIAAQQSLMRKFVTPGTPIPGVGLHPPGPPLARPVLPRERGV 256
Query: 277 IARIAAILVGDDPSQSYALICGNCHMHNGESIRKDI 312
+ R+ LVGD P AL+C C HNG +++++
Sbjct: 257 LDRLIEYLVGDGPQNRLALVCQQCLSHNGMALKEEF 292
>sp|P38878|YHZ2_YEAST Uncharacterized membrane protein YHR192W OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YHR192W PE=1
SV=1
Length = 278
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 6/130 (4%)
Query: 59 VKRRSQTWRRMSRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRALQVLPIFLLPGLSAL 118
+K+ + +L + + V+A+ Y AL + +L +
Sbjct: 40 LKKSQSILSQWQSNLTFYGIALTVLALSYTYWEYHGYRPYLVVTALLCIGSLILFKWALT 99
Query: 119 AYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPDPAAKAAA 178
AF + NR+ + L +LR + K+++LKE T+Y T +IQR+ A
Sbjct: 100 KLYAFYNNNRL------RKLAKLRAIHQKKLEKLKEETHYNATSSIIQRFSSGEDQNDDA 153
Query: 179 ATVLASKLGA 188
+L +L A
Sbjct: 154 MVLLDDELNA 163
>sp|Q17667|LNP1_CAEEL Protein lunapark-1 OS=Caenorhabditis elegans GN=lnp-1 PE=2 SV=2
Length = 342
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 99/281 (35%), Gaps = 57/281 (20%)
Query: 39 DDFEKRLQYISKEEAAILARVKRRSQTWRRMSRHLIIFTVVFEVIAVGYAIMTTRSMELN 98
DD +KRLQ IS L + + VV IA+ + + +
Sbjct: 23 DDLKKRLQTISSSNTNTLY--------------YYYMSIVVILSIAMAHTWLRFEDPQKT 68
Query: 99 WKTRALQVLPI-FLLPGLSALAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTN 157
+ AL + I +L G + + F S+ +R QK LE ++ +D +KE
Sbjct: 69 YVACALMLGAIGIVLAGRYVI--NGFFSWR--TNRTTQK-LENAISQKTTLLDLVKETLK 123
Query: 158 YYTTQQLIQRYDPDPAAKAAAATVLA---SKLGADSGLNVFVGDESNFNVPLGNSNDVEV 214
+ ++++ RY+ K T + S L + S + D S F P VE
Sbjct: 124 FKEAKEILDRYE-----KIEQNTTIDKNDSTLKSPSPIKKLTADSSMFATPKQEQKRVET 178
Query: 215 MPSSGLRNRKQLQPRSG--GAGSTPLHHSDEETSSSFGSEGPEHNQLVVNHHYPQVSTMH 272
+ G P S TP H + N + + Q +
Sbjct: 179 PTAQG--------PNSAMNSMNMTPYHQRN-------------RNAVPIRPFLRQTTAFD 217
Query: 273 DGGWIARIAAILVGDDPSQSYALICGNCHMHNGESIRKDIP 313
R+ + D P+ ALIC CH HNG S + P
Sbjct: 218 ------RVLDYFMSDGPNCRNALICSICHTHNGMSTPAEYP 252
>sp|A8XK26|LNP1_CAEBR Protein lunapark-1 OS=Caenorhabditis briggsae GN=lnp-1 PE=3 SV=1
Length = 344
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 277 IARIAAILVGDDPSQSYALICGNCHMHNGESIRKDIP 313
+ RI + D P+ ALIC CH HNG S+ + P
Sbjct: 219 LDRILDYFMSDGPNCRNALICSICHTHNGMSVPAEYP 255
>sp|Q8NSM0|FOLD_CORGL Bifunctional protein FolD OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=folD PE=1 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 267 QVSTMHDGGWIARIAAILVGDDP-SQSYA-LICGNCHMHNGESIRKDIPTLLL------- 317
+V+ + + G + +A +LVGDDP S SY + +C SIRKD+P +
Sbjct: 22 RVAALKEKGIVPGLATVLVGDDPASHSYVKMKHRDCEQIGVNSIRKDLPADVTQEELFAV 81
Query: 318 ---LNNEITCT 325
LNN+ +CT
Sbjct: 82 IDELNNDDSCT 92
>sp|A4QBY8|FOLD_CORGB Bifunctional protein FolD OS=Corynebacterium glutamicum (strain R)
GN=folD PE=3 SV=1
Length = 284
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 267 QVSTMHDGGWIARIAAILVGDDP-SQSYA-LICGNCHMHNGESIRKDIPTLLL------- 317
+V+ + + G + +A +LVGDDP S SY + +C SIRKD+P +
Sbjct: 22 RVAALKEKGIVPGLATVLVGDDPASHSYVKMKHRDCEQIGVNSIRKDLPADVTQEELFAV 81
Query: 318 ---LNNEITCT 325
LNN+ +CT
Sbjct: 82 IDELNNDDSCT 92
>sp|Q6GFR0|MENE_STAAR 2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain
MRSA252) GN=menE PE=3 SV=1
Length = 492
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 88 AIMTTRSMELNWKTRALQVLPIFLLPGLSALAYSAFVSFN-RMCDRKD-QKTLERLRVER 145
AI S+ + T L VLPI+ + GLS L + F R+ D+ + ++ L ++ ER
Sbjct: 190 AIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNER 249
Query: 146 KAKIDELKERTNYYTTQQLIQRYD 169
I + + N+ Q L + YD
Sbjct: 250 ITHISLVPQTLNWLMQQGLHEPYD 273
>sp|Q2YTP0|MENE_STAAB 2-succinylbenzoate--CoA ligase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=menE PE=3 SV=1
Length = 492
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 88 AIMTTRSMELNWKTRALQVLPIFLLPGLSALAYSAFVSFN-RMCDRKD-QKTLERLRVER 145
AI S+ + T L VLPI+ + GLS L + F R+ D+ + ++ L ++ ER
Sbjct: 190 AIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNER 249
Query: 146 KAKIDELKERTNYYTTQQLIQRYD 169
I + + N+ Q L + YD
Sbjct: 250 ITHISLVPQTLNWLMQQGLHEPYD 273
>sp|Q6NIZ6|FOLD_CORDI Bifunctional protein FolD OS=Corynebacterium diphtheriae (strain
ATCC 700971 / NCTC 13129 / Biotype gravis) GN=folD PE=3
SV=1
Length = 281
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 267 QVSTMHDGGWIARIAAILVGDDP-SQSYA-LICGNCHMHNGESIRKDIPT 314
+V+++ + G + +A +LVGDDP S +Y + +C + +SIRKD+P
Sbjct: 22 RVNSLREKGIVPGLATVLVGDDPASHAYVRMKHKDCEIVGVKSIRKDLPA 71
>sp|Q9PQQ7|RL2_UREPA 50S ribosomal protein L2 OS=Ureaplasma parvum serovar 3 (strain
ATCC 700970) GN=rplB PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 149 IDELKERTNYYTTQQLIQRYDPDPA--------AKAAAATVLASKLGADSGLNVFVGDES 200
ID + + N Y T + I+ YDP+ A ++A K G G + G+E
Sbjct: 66 IDFKRNKDNIYGTIKSIE-YDPNRTSFISLVVYADGEKRYIIAPK-GIKVGDKIISGNE- 122
Query: 201 NFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGG 232
N ++ LGNS +E +P L + +L P +GG
Sbjct: 123 NIDILLGNSLPLEFIPEGTLVHNIELSPNAGG 154
>sp|B1AIM3|RL2_UREP2 50S ribosomal protein L2 OS=Ureaplasma parvum serovar 3 (strain
ATCC 27815 / 27 / NCTC 11736) GN=rplB PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 149 IDELKERTNYYTTQQLIQRYDPDPA--------AKAAAATVLASKLGADSGLNVFVGDES 200
ID + + N Y T + I+ YDP+ A ++A K G G + G+E
Sbjct: 66 IDFKRNKDNIYGTIKSIE-YDPNRTSFISLVVYADGEKRYIIAPK-GIKVGDKIISGNE- 122
Query: 201 NFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGG 232
N ++ LGNS +E +P L + +L P +GG
Sbjct: 123 NIDILLGNSLPLEFIPEGTLVHNIELSPNAGG 154
>sp|B5ZB43|RL2_UREU1 50S ribosomal protein L2 OS=Ureaplasma urealyticum serovar 10
(strain ATCC 33699 / Western) GN=rplB PE=3 SV=1
Length = 279
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 149 IDELKERTNYYTTQQLIQRYDPDPA--------AKAAAATVLASKLGADSGLNVFVGDES 200
ID + + N Y T + I+ YDP+ A ++A K G G + G+E
Sbjct: 66 IDFKRNKDNIYGTIKSIE-YDPNRTSFISLVVYADGEKRYIIAPK-GIKVGDKIISGNE- 122
Query: 201 NFNVPLGNSNDVEVMPSSGLRNRKQLQPRSGG 232
N ++ LGNS +E +P L + +L P +GG
Sbjct: 123 NIDILLGNSLPLEFIPEDTLVHNIELSPNAGG 154
>sp|B8FET4|RL4_DESAA 50S ribosomal protein L4 OS=Desulfatibacillum alkenivorans (strain
AK-01) GN=rplD PE=3 SV=1
Length = 206
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 170 PDPAAKAAAATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVMPSSGL 220
P+ KA A + A +G D+ L V G+E N + N V+VMP++GL
Sbjct: 132 PEIKTKAFAEAMAA--MGVDTALIVTTGEEKNLELSARNVKGVKVMPTAGL 180
>sp|C3PLA3|FOLD_CORA7 Bifunctional protein FolD OS=Corynebacterium aurimucosum (strain
ATCC 700975 / DSM 44827 / CN-1) GN=folD PE=3 SV=1
Length = 284
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 267 QVSTMHDGGWIARIAAILVGDDP-SQSYA-LICGNCHMHNGESIRKDIPT---------- 314
+V+ + + G +A +LVGDDP S SY + +C SIRKD+P
Sbjct: 22 RVAALKEKGITPGLATVLVGDDPGSHSYVKMKHRDCEKLGINSIRKDLPADVSQEELERV 81
Query: 315 LLLLNNEITCT 325
+ LNN+ CT
Sbjct: 82 IEELNNDDACT 92
>sp|Q5NNK9|RIMM_ZYMMO Ribosome maturation factor RimM OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rimM PE=3 SV=1
Length = 163
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 126 FNRMCDRKDQKTLE--RLRVERKAKIDELKERTNYYTTQQLIQRYDPDPAAKAAAATVLA 183
F+ + DR + L L V RKA + +L YY LI DP+ ++ +V
Sbjct: 65 FSEITDRNQAEALRGTALTVPRKA-LPDLPADEYYYI--DLIGLPCVDPSGQSIGVSVAV 121
Query: 184 SKLGADSGLNVFVGDESNFNVPLGNSNDV 212
GA L + DE F VP+ + DV
Sbjct: 122 ENYGAGDILEIEKADEKRFMVPIAQAVDV 150
>sp|Q2NVN4|CYSJ_SODGM Sulfite reductase [NADPH] flavoprotein alpha-component OS=Sodalis
glossinidius (strain morsitans) GN=cysJ PE=3 SV=1
Length = 603
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 167 RYDPDPAAKAAAAT-VLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVM--PSSGLRN- 222
RY+ D + A+ LA +LG D L VF+ NF +P G+ N +M P +G+
Sbjct: 413 RYEIDGRPRTGGASGYLADRLGEDDELRVFIEHNDNFRLP-GDPNTPVIMIGPGTGIAPF 471
Query: 223 RKQLQPR--SGGAGSTPLHHSDEETSSSF 249
R LQ R G G L + + F
Sbjct: 472 RAFLQQREADGAPGQNWLFFGNPHFTDDF 500
>sp|Q8FRU9|FOLD_COREF Bifunctional protein FolD OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=folD PE=3 SV=2
Length = 284
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 267 QVSTMHDGGWIARIAAILVGDDP-SQSYA-LICGNCHMHNGESIRKDIPT 314
+V+ + + G + +A +LVGDDP S SY + +C SIR+D+P
Sbjct: 22 RVAALKEKGIVPGLATVLVGDDPASHSYVKMKHRDCEQIGVNSIRRDLPA 71
>sp|A8G9X6|CYSJ_SERP5 Sulfite reductase [NADPH] flavoprotein alpha-component OS=Serratia
proteamaculans (strain 568) GN=cysJ PE=3 SV=1
Length = 599
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 165 IQRYDPDPAAKAA-AATVLASKLGADSGLNVFVGDESNFNVPLGNSNDVEVM-PSSGL-- 220
+ RYD D A+A A++ LA +L D + VF+ NF +P V ++ P +G+
Sbjct: 407 VVRYDIDGRARAGGASSFLADRLEEDGDVRVFIEHNDNFRLPANPETPVIMIGPGTGIAP 466
Query: 221 -RNRKQLQPRSGGAGSTPLHHSDEETSSSF 249
R Q + G G L + + F
Sbjct: 467 FRAFMQQRDADGAGGKNWLFFGNPHFTEDF 496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,644,667
Number of Sequences: 539616
Number of extensions: 5468536
Number of successful extensions: 16351
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 16318
Number of HSP's gapped (non-prelim): 56
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)