Query 017446
Match_columns 371
No_of_seqs 147 out of 234
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 82.0 0.44 1.5E-05 34.2 1.1 27 293-327 13-39 (51)
2 1yuz_A Nigerythrin; rubrythrin 78.7 1.1 3.6E-05 40.6 2.7 42 274-325 153-195 (202)
3 3h0g_L DNA-directed RNA polyme 72.3 1.9 6.4E-05 32.2 2.2 28 293-325 20-47 (63)
4 1lko_A Rubrerythrin all-iron(I 67.9 2.7 9.4E-05 37.4 2.7 45 274-325 132-180 (191)
5 2akl_A PHNA-like protein PA012 66.7 2.3 8E-05 36.1 1.8 29 296-329 29-58 (138)
6 2qkd_A Zinc finger protein ZPR 65.2 1.5 5.2E-05 43.9 0.4 63 293-358 11-81 (404)
7 1twf_L ABC10-alpha, DNA-direct 63.9 2.4 8.2E-05 32.2 1.2 36 291-331 25-62 (70)
8 4ayb_P DNA-directed RNA polyme 59.1 5.9 0.0002 27.9 2.4 28 296-325 5-32 (48)
9 3pwf_A Rubrerythrin; non heme 58.5 8.9 0.0003 33.6 4.1 44 274-325 117-162 (170)
10 2ayj_A 50S ribosomal protein L 56.4 4.1 0.00014 29.7 1.3 27 293-327 18-44 (56)
11 2k4x_A 30S ribosomal protein S 54.7 9.5 0.00033 27.4 3.0 36 286-325 10-45 (55)
12 4rxn_A Rubredoxin; electron tr 54.5 5.4 0.00018 28.7 1.7 29 296-324 5-44 (54)
13 1qyp_A RNA polymerase II; tran 52.5 6.6 0.00023 28.0 1.9 32 294-325 15-52 (57)
14 2qkd_A Zinc finger protein ZPR 51.5 4.7 0.00016 40.3 1.3 67 289-358 215-289 (404)
15 3b60_A Lipid A export ATP-bind 49.6 1.8E+02 0.0062 29.5 13.0 34 137-170 199-232 (582)
16 4hkr_A Calcium release-activat 47.7 1.6E+02 0.0055 26.7 11.0 15 108-122 151-165 (214)
17 3qf4_B Uncharacterized ABC tra 46.7 1.1E+02 0.0039 31.2 10.9 36 135-170 209-244 (598)
18 1dl6_A Transcription factor II 44.1 11 0.00037 27.2 1.9 32 293-327 10-41 (58)
19 2ksd_A Aerobic respiration con 43.0 11 0.00037 31.3 2.0 48 107-154 61-110 (115)
20 3j21_g 50S ribosomal protein L 42.1 4.1 0.00014 29.1 -0.6 25 314-338 12-36 (51)
21 2fiy_A Protein FDHE homolog; F 41.7 4.9 0.00017 38.7 -0.3 29 288-325 203-231 (309)
22 1s24_A Rubredoxin 2; electron 40.1 12 0.00042 29.4 1.8 31 294-324 35-76 (87)
23 2con_A RUH-035 protein, NIN on 37.3 12 0.00041 29.0 1.3 40 291-340 12-51 (79)
24 3b5x_A Lipid A export ATP-bind 36.9 2.9E+02 0.0098 28.0 12.1 36 136-171 198-233 (582)
25 4hkr_A Calcium release-activat 36.8 2.4E+02 0.0083 25.5 10.0 19 106-124 154-173 (214)
26 1wii_A Hypothetical UPF0222 pr 35.6 11 0.00037 29.6 0.8 23 313-336 20-42 (85)
27 2k5c_A Uncharacterized protein 34.9 7.9 0.00027 30.4 -0.1 14 312-325 47-60 (95)
28 2yrc_A Protein transport prote 32.8 22 0.00076 25.8 2.1 38 293-331 8-48 (59)
29 2lcq_A Putative toxin VAPC6; P 32.0 17 0.00057 31.1 1.5 28 291-325 129-157 (165)
30 2yl4_A ATP-binding cassette SU 31.9 4.1E+02 0.014 26.8 12.3 33 138-170 197-229 (595)
31 1pcx_A Protein transport prote 31.4 24 0.00083 38.1 3.0 38 294-332 112-150 (810)
32 1m2v_B SEC24, protein transpor 31.2 27 0.00093 38.4 3.4 38 294-332 228-266 (926)
33 3u5e_m 60S ribosomal protein L 30.7 23 0.0008 28.9 2.2 29 292-328 91-121 (128)
34 3qt1_I DNA-directed RNA polyme 29.3 29 0.00099 29.2 2.5 32 295-328 25-58 (133)
35 1e8j_A Rubredoxin; iron-sulfur 28.9 27 0.00091 24.7 1.9 22 304-325 22-45 (52)
36 1twf_I B12.6, DNA-directed RNA 28.8 14 0.00049 30.5 0.5 33 295-329 5-39 (122)
37 1tfi_A Transcriptional elongat 28.4 26 0.0009 24.5 1.8 12 313-324 34-45 (50)
38 3qf4_A ABC transporter, ATP-bi 27.5 4.9E+02 0.017 26.3 12.5 33 137-169 197-229 (587)
39 2cly_A ATP synthase B chain, m 26.1 53 0.0018 29.9 3.8 41 118-158 70-110 (214)
40 1yk4_A Rubredoxin, RD; electro 25.8 26 0.00089 24.8 1.4 22 303-324 20-43 (52)
41 2k1p_A Zinc finger RAN-binding 25.0 21 0.00072 22.8 0.7 23 317-339 7-29 (33)
42 1nj3_A NPL4; NZF domain, rubre 24.9 24 0.0008 21.9 0.9 17 315-331 5-21 (31)
43 2v3b_B Rubredoxin 2, rubredoxi 24.3 28 0.00097 24.9 1.3 22 303-324 21-44 (55)
44 3po3_S Transcription elongatio 23.6 38 0.0013 29.7 2.3 31 295-325 138-174 (178)
45 4a82_A Cystic fibrosis transme 23.5 4.3E+02 0.015 26.6 10.6 35 136-170 194-228 (578)
46 3teq_A Stromal interaction mol 23.4 36 0.0012 27.5 1.9 54 15-69 37-90 (101)
47 3g5u_A MCG1178, multidrug resi 23.0 6.4E+02 0.022 28.3 12.7 61 109-170 858-918 (1284)
48 3p2a_A Thioredoxin 2, putative 22.6 20 0.00069 28.9 0.3 32 295-328 6-37 (148)
49 2kn9_A Rubredoxin; metalloprot 22.5 37 0.0013 26.3 1.8 31 294-324 27-68 (81)
50 2pnv_A Small conductance calci 22.5 62 0.0021 22.1 2.7 22 38-59 18-39 (43)
51 1g6u_A Domain swapped dimer; d 21.9 91 0.0031 21.1 3.3 15 44-58 21-35 (48)
52 3a43_A HYPD, hydrogenase nicke 21.6 32 0.0011 28.9 1.4 12 316-327 107-118 (139)
53 1x0t_A Ribonuclease P protein 21.3 43 0.0015 27.5 2.1 33 295-327 66-105 (120)
54 2lk0_A RNA-binding protein 5; 21.3 26 0.00087 22.2 0.5 21 317-337 6-26 (32)
55 3j20_Y 30S ribosomal protein S 21.0 41 0.0014 23.5 1.6 31 291-325 16-46 (50)
56 3eff_K Voltage-gated potassium 20.7 3.3E+02 0.011 21.9 9.2 8 162-169 121-128 (139)
57 2fzt_A Hypothetical protein TM 20.6 84 0.0029 24.1 3.3 27 137-167 22-48 (79)
58 1oeg_A Apolipoprotein E; siali 20.5 38 0.0013 20.8 1.2 20 138-157 3-22 (26)
59 1pqv_S STP-alpha, transcriptio 20.5 26 0.0009 33.4 0.6 33 317-351 269-301 (309)
60 2gnr_A Conserved hypothetical 20.1 39 0.0013 28.7 1.6 45 293-349 46-90 (145)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.97 E-value=0.44 Score=34.16 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=18.0
Q ss_pred ceeeccccccccCccCCCCCCcceeEcCCCCCcCC
Q 017446 293 YALICGNCHMHNGESIRKDIPTLLLLNNEITCTTP 327 (371)
Q Consensus 293 yALIC~~C~~HNGlA~keefe~i~y~C~~C~~~np 327 (371)
-.-||..|.++|| .-.+.|-.||+.|=
T Consensus 13 ~k~iCpkC~a~~~--------~gaw~CrKCG~~~l 39 (51)
T 3j21_g 13 KKYVCLRCGATNP--------WGAKKCRKCGYKRL 39 (51)
T ss_dssp SEEECTTTCCEEC--------TTCSSCSSSSSCCC
T ss_pred CCccCCCCCCcCC--------CCceecCCCCCccc
Confidence 3467888888754 33457888887753
No 2
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=78.70 E-value=1.1 Score=40.63 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHhcCCCCCcceeeccccc-cccCccCCCCCCcceeEcCCCCCc
Q 017446 274 GGWIARIAAILVGDDPSQSYALICGNCH-MHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 274 r~w~DRv~D~LvGddp~~ryALIC~~C~-~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
-.||.+++|.|-.++.. ---+|..|. .|.|-+| +.||.||+.
T Consensus 153 ~~~~~~ll~~l~~~~~~--~~~~C~~CG~i~~g~~p--------~~CP~C~~~ 195 (202)
T 1yuz_A 153 AERYLAAYNDIDAPDDD--KFHLCPICGYIHKGEDF--------EKCPICFRP 195 (202)
T ss_dssp HHHHHHHHHTTTCCCSC--CEEECSSSCCEEESSCC--------SBCTTTCCB
T ss_pred HHHHHHHHHHHhcCCCC--cEEEECCCCCEEcCcCC--------CCCCCCCCC
Confidence 36788888877544332 356899994 5677222 799999985
No 3
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=72.33 E-value=1.9 Score=32.18 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=21.5
Q ss_pred ceeeccccccccCccCCCCCCcceeEcCCCCCc
Q 017446 293 YALICGNCHMHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 293 yALIC~~C~~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
..-||..|..-|-+-. .-..+|++||+.
T Consensus 20 v~Y~C~~Cg~~~~l~~-----~~~iRC~~CG~R 47 (63)
T 3h0g_L 20 MIYLCADCGARNTIQA-----KEVIRCRECGHR 47 (63)
T ss_dssp CCCBCSSSCCBCCCCS-----SSCCCCSSSCCC
T ss_pred eEEECCCCCCeeecCC-----CCceECCCCCcE
Confidence 3579999998887553 234699999986
No 4
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=67.90 E-value=2.7 Score=37.38 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHhcCCCC---Ccceeecccccc-ccCccCCCCCCcceeEcCCCCCc
Q 017446 274 GGWIARIAAILVGDDPS---QSYALICGNCHM-HNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 274 r~w~DRv~D~LvGddp~---~ryALIC~~C~~-HNGlA~keefe~i~y~C~~C~~~ 325 (371)
-.+|.+++|.|-.+..- ..-.-+|..|.. |.|-.+++ .||.||+.
T Consensus 132 e~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p~-------~CP~C~~~ 180 (191)
T 1lko_A 132 EKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPE-------LCPACAHP 180 (191)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECCS-------BCTTTCCB
T ss_pred HHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCCC-------CCCCCcCC
Confidence 36888888887654322 223678999943 34533333 89999983
No 5
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=66.66 E-value=2.3 Score=36.11 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=19.6
Q ss_pred eccccccccCccCCCCCCcceeEcCCCCC-cCCcc
Q 017446 296 ICGNCHMHNGESIRKDIPTLLLLNNEITC-TTPKS 329 (371)
Q Consensus 296 IC~~C~~HNGlA~keefe~i~y~C~~C~~-~np~~ 329 (371)
-|.+|.+-+-.- +...|+||+|+| |+++.
T Consensus 29 ~CP~C~seytYe-----Dg~l~vCPeC~hEW~~~~ 58 (138)
T 2akl_A 29 PCPQCNSEYTYE-----DGALLVCPECAHEWSPNE 58 (138)
T ss_dssp CCTTTCCCCCEE-----CSSSEEETTTTEEECTTT
T ss_pred CCCCCCCcceEe-----cCCeEECCccccccCCcc
Confidence 388998755432 225699999999 45544
No 6
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=65.20 E-value=1.5 Score=43.86 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=44.7
Q ss_pred ceeeccccccccCccCC--CCCCc------ceeEcCCCCCcCCcchhhhhhccCCccceeeeeehHHhhhcccc
Q 017446 293 YALICGNCHMHNGESIR--KDIPT------LLLLNNEITCTTPKSIVLFMKCSGLKKTIFSFVVCVKVLLGRRI 358 (371)
Q Consensus 293 yALIC~~C~~HNGlA~k--eefe~------i~y~C~~C~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (371)
..-.|-+|+ .||+..- -+-+| .+|.|++||+.|-. +.....-.++.+-+.+-|.-+.=|-|++
T Consensus 11 ~~s~Cp~C~-~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~e--v~~~g~~~pkG~r~tL~V~~~~DLnr~V 81 (404)
T 2qkd_A 11 IESLCMNCY-RNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTE--IQSAGRIQDQGVRYTLTVRSQEDMNREV 81 (404)
T ss_dssp CEEECTTTS-SEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEE--EEEEESSCSSEEEEEEEECSHHHHTCEE
T ss_pred ccccCCCCC-CCceEEEEEEcCCCCceEEEEEEECCCCCCchhe--eeECcccCCCcEEEEEEECChhcccceE
Confidence 456799999 8898662 22232 56999999999853 4456666677778888886666677765
No 7
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=63.91 E-value=2.4 Score=32.17 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=24.5
Q ss_pred CcceeeccccccccCccCCCCCCcceeEcCCCCC--cCCcchh
Q 017446 291 QSYALICGNCHMHNGESIRKDIPTLLLLNNEITC--TTPKSIV 331 (371)
Q Consensus 291 ~ryALIC~~C~~HNGlA~keefe~i~y~C~~C~~--~np~~~~ 331 (371)
+.+--||..|...|-+-.. +- -+|++||+ +.-++--
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~---d~--irCp~CG~RILyK~R~~ 62 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRT---DA--VRCKDCGHRILLKARTK 62 (70)
T ss_dssp CCCCEECSSSCCEECCCTT---ST--TCCSSSCCCCCBCCCCS
T ss_pred ceEEEECCCCCCcceeCCC---CC--ccCCCCCceEeEecCCC
Confidence 5677899999988765421 22 28999999 4544433
No 8
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=59.10 E-value=5.9 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=16.1
Q ss_pred eccccccccCccCCCCCCcceeEcCCCCCc
Q 017446 296 ICGNCHMHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 296 IC~~C~~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
.|-+|...=...-.+-.+ .-+||+||+.
T Consensus 5 ~C~rCg~~fs~~el~~lP--~IrCpyCGyr 32 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLP--GVRCPYCGYK 32 (48)
T ss_dssp CCCCTTTTCCCCCSCCCS--SSCCTTTCCS
T ss_pred EeeccCCCccHHHHhhCC--CcccCccCcE
Confidence 477775544333322222 3489999986
No 9
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=58.51 E-value=8.9 Score=33.58 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHhcCCC-CCcceeecccccc-ccCccCCCCCCcceeEcCCCCCc
Q 017446 274 GGWIARIAAILVGDDP-SQSYALICGNCHM-HNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 274 r~w~DRv~D~LvGddp-~~ryALIC~~C~~-HNGlA~keefe~i~y~C~~C~~~ 325 (371)
..||.++++.|-.+.. ...---+|.+|.. |.| +.+. .||-||+.
T Consensus 117 ~~~~~~~l~~l~~~~~~~~~~~~~C~~CG~i~~~-----~~p~---~CP~Cg~~ 162 (170)
T 3pwf_A 117 AELYRKAKEKAEKGEDIEIKKVYICPICGYTAVD-----EAPE---YCPVCGAP 162 (170)
T ss_dssp HHHHHHHHHHHTTTCCCCCSCEEECTTTCCEEES-----CCCS---BCTTTCCB
T ss_pred HHHHHHHHHHHhcCCcCCCCCeeEeCCCCCeeCC-----CCCC---CCCCCCCC
Confidence 4799999998854321 1223457999975 454 2222 89999963
No 10
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=56.38 E-value=4.1 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=19.0
Q ss_pred ceeeccccccccCccCCCCCCcceeEcCCCCCcCC
Q 017446 293 YALICGNCHMHNGESIRKDIPTLLLLNNEITCTTP 327 (371)
Q Consensus 293 yALIC~~C~~HNGlA~keefe~i~y~C~~C~~~np 327 (371)
.-.||.+|...|..-- -.|-.||+.|=
T Consensus 18 ~k~ICrkC~ARnp~~A--------~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRA--------TKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTC--------SSCTTTCCCCE
T ss_pred chhhhccccCcCCccc--------ccccCCCCCCC
Confidence 3578999988886542 26888887653
No 11
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=54.75 E-value=9.5 Score=27.38 Aligned_cols=36 Identities=11% Similarity=-0.069 Sum_probs=26.8
Q ss_pred cCCCCCcceeeccccccccCccCCCCCCcceeEcCCCCCc
Q 017446 286 GDDPSQSYALICGNCHMHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 286 Gddp~~ryALIC~~C~~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
.||--.|--..|.+|.+.-.||... -.|.|..||+.
T Consensus 10 ~~gki~~~~~fCPkCG~~~~ma~~~----dr~~C~kCgyt 45 (55)
T 2k4x_A 10 ADGKLVRKHRFCPRCGPGVFLAEHA----DRYSCGRCGYT 45 (55)
T ss_dssp CCCCCCCSSCCCTTTTTTCCCEECS----SEEECTTTCCC
T ss_pred cCCEEEEccccCcCCCCceeEeccC----CEEECCCCCCE
Confidence 3455567778999998866676432 28999999987
No 12
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=54.52 E-value=5.4 Score=28.73 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=21.2
Q ss_pred ecccccc---------ccCccCCCCCCcc--eeEcCCCCC
Q 017446 296 ICGNCHM---------HNGESIRKDIPTL--LLLNNEITC 324 (371)
Q Consensus 296 IC~~C~~---------HNGlA~keefe~i--~y~C~~C~~ 324 (371)
+|..|.- .||.++--.|+.+ .|+||.||.
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCC
Confidence 6777764 3677776667665 589999997
No 13
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=52.52 E-value=6.6 Score=27.96 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=17.5
Q ss_pred eeeccccccccCcc------CCCCCCcceeEcCCCCCc
Q 017446 294 ALICGNCHMHNGES------IRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 294 ALIC~~C~~HNGlA------~keefe~i~y~C~~C~~~ 325 (371)
..-|.+|..+.-.. ...|..-+-|.|..||+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 35577777633311 122444566777777764
No 14
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=51.48 E-value=4.7 Score=40.30 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=41.0
Q ss_pred CCCcceeeccccccccCccC--CCCCC------cceeEcCCCCCcCCcchhhhhhccCCccceeeeeehHHhhhcccc
Q 017446 289 PSQSYALICGNCHMHNGESI--RKDIP------TLLLLNNEITCTTPKSIVLFMKCSGLKKTIFSFVVCVKVLLGRRI 358 (371)
Q Consensus 289 p~~ryALIC~~C~~HNGlA~--keefe------~i~y~C~~C~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (371)
+...+.-.|.+|. +||... .-+-+ ..+|.|.+||+.|-. +.....-.++.+-+.+-|.-+.=|-|+|
T Consensus 215 ev~~~~s~Cp~C~-~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ne--Vk~~g~i~~~G~ritL~V~~~~DL~R~V 289 (404)
T 2qkd_A 215 EVLQFNTNCPECN-APAQTNMKLVQIPHFKEVIIMATNCENCGHRTNE--VKSGGAVEPLGTRITLHITDPSDMTRDL 289 (404)
T ss_dssp CEEEEEECCTTTC-CTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEE--EEECSSSCCCEEEEEEEECSGGGGGCEE
T ss_pred ceeeecccCccCC-CccEEEEEEEeCCCCCcEEEEEEECCCCCCcccc--eeeccccCCCcEEEEEEECChHHcccee
Confidence 3345888999999 688764 12333 356999999999743 2222333334455666665555555554
No 15
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=49.59 E-value=1.8e+02 Score=29.46 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCC
Q 017446 137 TLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (371)
Q Consensus 137 kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~ 170 (371)
...++...-.+.+.-++.-.-|.......++|+.
T Consensus 199 ~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b60_A 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHH
Confidence 3444444444455545555556655556666554
No 16
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=47.74 E-value=1.6e+02 Score=26.67 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHH
Q 017446 108 PIFLLPGLSALAYSA 122 (371)
Q Consensus 108 p~l~~P~li~li~~~ 122 (371)
-.+++|+++.++..+
T Consensus 151 t~vliPv~i~F~~Fa 165 (214)
T 4hkr_A 151 TVVLIPVMIIFMAFA 165 (214)
T ss_dssp HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355678887776543
No 17
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=46.66 E-value=1.1e+02 Score=31.18 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCC
Q 017446 135 QKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (371)
Q Consensus 135 e~kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~ 170 (371)
.+...++...-.+.+.-++.-.-|...+...++|+.
T Consensus 209 ~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 244 (598)
T 3qf4_B 209 QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDR 244 (598)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHH
Confidence 344555555555556555655556666666666654
No 18
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.09 E-value=11 Score=27.23 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=22.5
Q ss_pred ceeeccccccccCccCCCCCCcceeEcCCCCCcCC
Q 017446 293 YALICGNCHMHNGESIRKDIPTLLLLNNEITCTTP 327 (371)
Q Consensus 293 yALIC~~C~~HNGlA~keefe~i~y~C~~C~~~np 327 (371)
-.+.|..|...+ ++ .+++--..+|..||.--.
T Consensus 10 ~~~~Cp~C~~~~-lv--~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPDAI-LV--EDYRAGDMICPECGLVVG 41 (58)
T ss_dssp SCCSBTTBSSSC-CE--ECSSSCCEECTTTCCEEC
T ss_pred ccccCcCCCCCc-ee--EeCCCCeEEeCCCCCEEe
Confidence 356899998766 43 355666789999987543
No 19
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=42.96 E-value=11 Score=31.31 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 017446 107 LPIFLLPGLSALAYSAFVSFN--RMCDRKDQKTLERLRVERKAKIDELKE 154 (371)
Q Consensus 107 lp~l~~P~li~li~~~~~~f~--~~~~~~~e~kL~~L~~qkkk~IeelKe 154 (371)
..++..|.++|++-.+....- |..-.+.-.+|+.++++.+..-.+||+
T Consensus 61 Fgli~aP~viYFls~vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln~~L~~ 110 (115)
T 2ksd_A 61 FGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDLSLNVQLKD 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSCCCCCC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888887655444331 111123334677777765554445544
No 20
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.10 E-value=4.1 Score=29.07 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=21.2
Q ss_pred cceeEcCCCCCcCCcchhhhhhccC
Q 017446 314 TLLLLNNEITCTTPKSIVLFMKCSG 338 (371)
Q Consensus 314 ~i~y~C~~C~~~np~~~~~~~~~~~ 338 (371)
+-.++|+.||..||.+|..--+|+-
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~ 36 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGY 36 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSS
T ss_pred hCCccCCCCCCcCCCCceecCCCCC
Confidence 4679999999999999988777753
No 21
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.66 E-value=4.9 Score=38.65 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCCcceeeccccccccCccCCCCCCcceeEcCCCCCc
Q 017446 288 DPSQSYALICGNCHMHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 288 dp~~ryALIC~~C~~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
....|| |.|+-|.+ ||.|....|++||..
T Consensus 203 ~~G~R~-l~Cs~C~t--------~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 203 ETGLRY-LSCSLCAC--------EWHYVRIKCSHCEES 231 (309)
T ss_dssp -CCEEE-EEETTTCC--------EEECCTTSCSSSCCC
T ss_pred CCCcEE-EEeCCCCC--------EEeecCcCCcCCCCC
Confidence 344564 89999976 688999999999987
No 22
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=40.09 E-value=12 Score=29.45 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=21.3
Q ss_pred eeecccccc---------ccCccCCCCCCcc--eeEcCCCCC
Q 017446 294 ALICGNCHM---------HNGESIRKDIPTL--LLLNNEITC 324 (371)
Q Consensus 294 ALIC~~C~~---------HNGlA~keefe~i--~y~C~~C~~ 324 (371)
.-+|..|.. .||.++--.|+.+ -|+||.||.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 468888862 4555655456654 489999997
No 23
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=37.30 E-value=12 Score=29.00 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=27.5
Q ss_pred CcceeeccccccccCccCCCCCCcceeEcCCCCCcCCcchhhhhhccCCc
Q 017446 291 QSYALICGNCHMHNGESIRKDIPTLLLLNNEITCTTPKSIVLFMKCSGLK 340 (371)
Q Consensus 291 ~ryALIC~~C~~HNGlA~keefe~i~y~C~~C~~~np~~~~~~~~~~~~~ 340 (371)
.+|.|.|.-||..- .+--..-||.||.. .+.|.+=+-+.+
T Consensus 12 k~~iLrC~aCf~~t-------~~~~k~FCp~CGn~---TL~Rvsvsvd~~ 51 (79)
T 2con_A 12 RSYILRCHGCFKTT-------SDMNRVFCGHCGNK---TLKKVSVTINDD 51 (79)
T ss_dssp CCEEEECSSSCCEE-------SCSSCCSCSSSCCS---CCEEEECBCCSS
T ss_pred eeeeeEecccceEC-------CCcccccccccCcc---cceEEEEEECCC
Confidence 46999999999885 23344569999984 566655444444
No 24
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=36.92 E-value=2.9e+02 Score=27.97 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCCC
Q 017446 136 KTLERLRVERKAKIDELKERTNYYTTQQLIQRYDPD 171 (371)
Q Consensus 136 ~kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~~ 171 (371)
+..+++...-.+.+.-++.-..|...+...++|+..
T Consensus 198 ~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~ 233 (582)
T 3b5x_A 198 TAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKV 233 (582)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHH
Confidence 344555555555555556655666666666666543
No 25
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=36.79 E-value=2.4e+02 Score=25.54 Aligned_cols=19 Identities=16% Similarity=0.562 Sum_probs=9.9
Q ss_pred hhhhhH-HHHHHHHHHHHHH
Q 017446 106 VLPIFL-LPGLSALAYSAFV 124 (371)
Q Consensus 106 ~lp~l~-~P~li~li~~~~~ 124 (371)
++|+++ |-++++-+|+-+.
T Consensus 154 liPv~i~F~~Fa~hFYrsL~ 173 (214)
T 4hkr_A 154 LIPVMIIFMAFAIHFYRSLV 173 (214)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 456543 5555555555443
No 26
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=35.60 E-value=11 Score=29.62 Aligned_cols=23 Identities=4% Similarity=-0.194 Sum_probs=15.7
Q ss_pred CcceeEcCCCCCcCCcchhhhhhc
Q 017446 313 PTLLLLNNEITCTTPKSIVLFMKC 336 (371)
Q Consensus 313 e~i~y~C~~C~~~np~~~~~~~~~ 336 (371)
-...|.||+|||.+ +=.+.+.+.
T Consensus 20 L~t~F~CPfCnh~~-sV~vkidk~ 42 (85)
T 1wii_A 20 LETQFTCPFCNHEK-SCDVKMDRA 42 (85)
T ss_dssp CSSCCCCTTTCCSS-CEEEEEETT
T ss_pred CCCeEcCCCCCCCC-eEEEEEEcc
Confidence 34678999999998 444444433
No 27
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=34.94 E-value=7.9 Score=30.38 Aligned_cols=14 Identities=0% Similarity=-0.085 Sum_probs=11.7
Q ss_pred CCcceeEcCCCCCc
Q 017446 312 IPTLLLLNNEITCT 325 (371)
Q Consensus 312 fe~i~y~C~~C~~~ 325 (371)
|+.+.|.||.||-.
T Consensus 47 ~e~F~FkCP~CgEE 60 (95)
T 2k5c_A 47 VEEFVFKCPVCGEE 60 (95)
T ss_dssp HHHSEEECTTTCCE
T ss_pred HHHHhhcCCCccHH
Confidence 56788999999965
No 28
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.77 E-value=22 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=25.0
Q ss_pred ceeeccc--cccc-cCccCCCCCCcceeEcCCCCCcCCcchh
Q 017446 293 YALICGN--CHMH-NGESIRKDIPTLLLLNNEITCTTPKSIV 331 (371)
Q Consensus 293 yALIC~~--C~~H-NGlA~keefe~i~y~C~~C~~~np~~~~ 331 (371)
-.+-|.+ |++- |-.+.- ++..-.|+|+.|+..|+-|-.
T Consensus 8 ~pvRC~r~~CraylNP~~~~-~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQV-DYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEE-EGGGTEEECSSSCCEEECCSC
T ss_pred CCcccCCCCCCeEECCceEE-ECCCCEEEcccCCCcCCCCHH
Confidence 3577888 9753 333332 233457999999999986643
No 29
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=32.03 E-value=17 Score=31.08 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=18.8
Q ss_pred Ccceeeccccccc-cCccCCCCCCcceeEcCCCCCc
Q 017446 291 QSYALICGNCHMH-NGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 291 ~ryALIC~~C~~H-NGlA~keefe~i~y~C~~C~~~ 325 (371)
..|...|..|+.. .++.+ .-.||.||..
T Consensus 129 ~~~~y~C~~Cg~~~~~~~~-------~~~Cp~CG~~ 157 (165)
T 2lcq_A 129 IKWRYVCIGCGRKFSTLPP-------GGVCPDCGSK 157 (165)
T ss_dssp CCCCEEESSSCCEESSCCG-------GGBCTTTCCB
T ss_pred ccEEEECCCCCCcccCCCC-------CCcCCCCCCc
Confidence 3588999999853 22311 1289999975
No 30
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=31.85 E-value=4.1e+02 Score=26.84 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCC
Q 017446 138 LERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (371)
Q Consensus 138 L~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~ 170 (371)
..++...-.+.++-++.-..|.......++|+.
T Consensus 197 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 229 (595)
T 2yl4_A 197 LAQATQLAEERIGNVRTVRAFGKEMTEIEKYAS 229 (595)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHH
Confidence 344444444444444554455555555555553
No 31
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=31.43 E-value=24 Score=38.08 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=25.9
Q ss_pred eeeccccccc-cCccCCCCCCcceeEcCCCCCcCCcchhh
Q 017446 294 ALICGNCHMH-NGESIRKDIPTLLLLNNEITCTTPKSIVL 332 (371)
Q Consensus 294 ALIC~~C~~H-NGlA~keefe~i~y~C~~C~~~np~~~~~ 332 (371)
..-|++|++- |-...-. +..-.|+|+.|++.|+-|-.-
T Consensus 112 pvRC~~CrayiNPf~~~~-~~g~~W~C~~C~~~N~~P~~y 150 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFI-EQGRRWRCNFCRLANDVPMQM 150 (810)
T ss_dssp CCBCTTTCCBCCTTCEEE-TTTTEEECTTTCCEEECCGGG
T ss_pred CCccCCccCEecCceEEe-CCCCEEEccCCCCcCCCchhh
Confidence 5779999873 4444322 233589999999999866543
No 32
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=31.20 E-value=27 Score=38.38 Aligned_cols=38 Identities=11% Similarity=-0.031 Sum_probs=26.0
Q ss_pred eeeccccccc-cCccCCCCCCcceeEcCCCCCcCCcchhh
Q 017446 294 ALICGNCHMH-NGESIRKDIPTLLLLNNEITCTTPKSIVL 332 (371)
Q Consensus 294 ALIC~~C~~H-NGlA~keefe~i~y~C~~C~~~np~~~~~ 332 (371)
.+-|++|++- |-...-. +..-.|+|+.|++.|+-|-.-
T Consensus 228 pvRC~rCrAYiNPf~~~~-~~g~~W~CnfC~~~N~~P~~Y 266 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFI-EQGRRWRCNFCRLANDVPMQM 266 (926)
T ss_dssp CCBCSSSCCBCCTTCEEE-TTTTEEECTTTCCEEECCGGG
T ss_pred CCccCCccCEecCceEEe-CCCCEEEccCCCCCCCCchhh
Confidence 5779999873 4444322 234589999999999766543
No 33
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=30.74 E-value=23 Score=28.89 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=21.0
Q ss_pred cceeeccccccccCccCCCCCCcceeEcC--CCCCcCCc
Q 017446 292 SYALICGNCHMHNGESIRKDIPTLLLLNN--EITCTTPK 328 (371)
Q Consensus 292 ryALIC~~C~~HNGlA~keefe~i~y~C~--~C~~~np~ 328 (371)
-.-.||.+|+.+|-... ..|. .||+.|..
T Consensus 91 ~~~~ic~~~~~~~~~~~--------~~~~~~~c~~~~~~ 121 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRA--------TNCRKRKCGHTNQL 121 (128)
T ss_dssp TSCEEETTTCCEECTTC--------SSCSCTTTTSCCCE
T ss_pred cceEeeccccccCCchh--------hccchhhCCCcccc
Confidence 35699999999996433 2678 49887743
No 34
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.29 E-value=29 Score=29.21 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred eeccccccccCccCCCCC--CcceeEcCCCCCcCCc
Q 017446 295 LICGNCHMHNGESIRKDI--PTLLLLNNEITCTTPK 328 (371)
Q Consensus 295 LIC~~C~~HNGlA~keef--e~i~y~C~~C~~~np~ 328 (371)
--|..|. |-|.++++- ....|.|..||+.-++
T Consensus 25 ~FCPeCg--NmL~pked~~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 25 RFCRDCN--NMLYPREDKENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CBCTTTC--CBCBCCBCTTTCCBCCBCSSSCCBCCC
T ss_pred eeCCCCC--CEeeECccCCCceeEEECCCCCCcEEc
Confidence 3488885 577787653 3578999999998654
No 35
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=28.86 E-value=27 Score=24.70 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=14.5
Q ss_pred cCccCCCCCCcc--eeEcCCCCCc
Q 017446 304 NGESIRKDIPTL--LLLNNEITCT 325 (371)
Q Consensus 304 NGlA~keefe~i--~y~C~~C~~~ 325 (371)
+|.++--.|+.+ .|+||.||.-
T Consensus 22 ~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 22 SGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp TTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cCcCCCCchHHCCCCCcCCCCCCc
Confidence 455554446654 4899999973
No 36
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=28.82 E-value=14 Score=30.46 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=23.9
Q ss_pred eeccccccccCccCCCC--CCcceeEcCCCCCcCCcc
Q 017446 295 LICGNCHMHNGESIRKD--IPTLLLLNNEITCTTPKS 329 (371)
Q Consensus 295 LIC~~C~~HNGlA~kee--fe~i~y~C~~C~~~np~~ 329 (371)
.-|..| .|=|.++++ -....|.|..||+..++.
T Consensus 5 ~FCp~C--gnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDC--NNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSS--CCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred Cccccc--CccCcccccCcCCCCEEECCcCCCeeecC
Confidence 358888 456666664 345789999999987654
No 37
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.45 E-value=26 Score=24.48 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.6
Q ss_pred CcceeEcCCCCC
Q 017446 313 PTLLLLNNEITC 324 (371)
Q Consensus 313 e~i~y~C~~C~~ 324 (371)
.-+=|+|..|||
T Consensus 34 mT~Fy~C~~Cg~ 45 (50)
T 1tfi_A 34 MTTFVVCNECGN 45 (50)
T ss_dssp CEEEEEESSSCC
T ss_pred ceEEEEcCCCCC
Confidence 334466666655
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=27.55 E-value=4.9e+02 Score=26.30 Aligned_cols=33 Identities=0% Similarity=0.056 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcC
Q 017446 137 TLERLRVERKAKIDELKERTNYYTTQQLIQRYD 169 (371)
Q Consensus 137 kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd 169 (371)
..+++...-.+.+.-++.-.-|...+...++|+
T Consensus 197 ~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 229 (587)
T 3qf4_A 197 STDEVNRVVRENLLGVRVVRAFRREEYENENFR 229 (587)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 344444444444444444444444444444443
No 39
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=26.07 E-value=53 Score=29.88 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhcCh
Q 017446 118 LAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNY 158 (371)
Q Consensus 118 li~~~~~~f~~~~~~~~e~kL~~L~~qkkk~IeelKe~t~Y 158 (371)
+++++--.+..|.+...++.++.|++-+.+.++.+|+.-..
T Consensus 70 ~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~ 110 (214)
T 2cly_A 70 IVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDM 110 (214)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455678888888888999999888888888776543
No 40
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=25.83 E-value=26 Score=24.77 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=15.1
Q ss_pred ccCccCCCCCCcc--eeEcCCCCC
Q 017446 303 HNGESIRKDIPTL--LLLNNEITC 324 (371)
Q Consensus 303 HNGlA~keefe~i--~y~C~~C~~ 324 (371)
.||.++--.|+.+ .|+||.||.
T Consensus 20 ~~gi~pGt~f~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 20 DNGISPGTKFEDLPDDWVCPLCGA 43 (52)
T ss_dssp GGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred ccCcCCCCCHhHCCCCCcCCCCCC
Confidence 3556665556654 489999997
No 41
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.04 E-value=21 Score=22.76 Aligned_cols=23 Identities=4% Similarity=-0.163 Sum_probs=14.2
Q ss_pred eEcCCCCCcCCcchhhhhhccCC
Q 017446 317 LLNNEITCTTPKSIVLFMKCSGL 339 (371)
Q Consensus 317 y~C~~C~~~np~~~~~~~~~~~~ 339 (371)
|.|+.|+..|=++-+.--+|+-+
T Consensus 7 W~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 7 WQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp CBCSSSCCBCCTTCSBCSSSCCB
T ss_pred cccCCCCCccccccccccccCCc
Confidence 56777777776665555544443
No 42
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=24.86 E-value=24 Score=21.92 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=13.5
Q ss_pred ceeEcCCCCCcCCcchh
Q 017446 315 LLLLNNEITCTTPKSIV 331 (371)
Q Consensus 315 i~y~C~~C~~~np~~~~ 331 (371)
-.|.|+.|++.|+....
T Consensus 5 ~~W~C~~CTf~N~~~~~ 21 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTG 21 (31)
T ss_dssp CCEECSSSCCEECSSCS
T ss_pred ccccCCcccccCCCCCC
Confidence 36889999999987654
No 43
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.32 E-value=28 Score=24.86 Aligned_cols=22 Identities=5% Similarity=-0.012 Sum_probs=15.0
Q ss_pred ccCccCCCCCCcc--eeEcCCCCC
Q 017446 303 HNGESIRKDIPTL--LLLNNEITC 324 (371)
Q Consensus 303 HNGlA~keefe~i--~y~C~~C~~ 324 (371)
.||.++--.|+.+ .|+||.||.
T Consensus 21 ~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 21 EEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp TTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred ccCcCCCCChhHCCCCCcCCCCCC
Confidence 3556665456654 479999997
No 44
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=23.59 E-value=38 Score=29.74 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=20.3
Q ss_pred eeccccccccCccC------CCCCCcceeEcCCCCCc
Q 017446 295 LICGNCHMHNGESI------RKDIPTLLLLNNEITCT 325 (371)
Q Consensus 295 LIC~~C~~HNGlA~------keefe~i~y~C~~C~~~ 325 (371)
.-|.+|...+-..- -.|..-+=|+|..|||.
T Consensus 138 ~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~ 174 (178)
T 3po3_S 138 FTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNR 174 (178)
T ss_dssp SCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCE
T ss_pred cCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCe
Confidence 56888986655332 13445567889888874
No 45
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=23.49 E-value=4.3e+02 Score=26.65 Aligned_cols=35 Identities=6% Similarity=0.174 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCC
Q 017446 136 KTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (371)
Q Consensus 136 ~kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~ 170 (371)
+...++...-.+.+.-++.-..|.......++|+.
T Consensus 194 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 34444444445555555555555555555555543
No 46
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=23.36 E-value=36 Score=27.54 Aligned_cols=54 Identities=15% Similarity=0.352 Sum_probs=33.8
Q ss_pred chhhhcccceeeecccccccccCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 017446 15 SKAVEKKRKGIISRLWNGIFRLKGDDFEKRLQYISKEEAAILARVKRRSQTWRRM 69 (371)
Q Consensus 15 ~~~~~~~~ggi~Sr~w~~~Fr~k~~~fEK~L~~L~~kI~~~~~rL~~~~~~~rr~ 69 (371)
-+.-+||+..||+- +...+.+.-|+++..+-..-.-+.++...++.+..||+++
T Consensus 37 ~eKl~KKrsS~~gs-~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 90 (101)
T 3teq_A 37 AEKIKKKRNTLFGT-FHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQI 90 (101)
T ss_dssp HHHHHHHHHHHHCH-HHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhchhee-eehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888888885 3233456678888555544444555666666666666554
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=23.00 E-value=6.4e+02 Score=28.33 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHhcCC
Q 017446 109 IFLLPGLSALAYSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (371)
Q Consensus 109 ~l~~P~li~li~~~~~~f~~~~~~~~e~kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLekYd~ 170 (371)
++++|+++++.+.....+ +....+..+.++.....-.+.++.++.-..|.......++|+.
T Consensus 858 l~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~ 918 (1284)
T 3g5u_A 858 LAIVPIIAIAGVVEMKML-SGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQ 918 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334555554433222222 2222334445555555556666666666667766666777654
No 48
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=22.62 E-value=20 Score=28.88 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=22.0
Q ss_pred eeccccccccCccCCCCCCcceeEcCCCCCcCCc
Q 017446 295 LICGNCHMHNGESIRKDIPTLLLLNNEITCTTPK 328 (371)
Q Consensus 295 LIC~~C~~HNGlA~keefe~i~y~C~~C~~~np~ 328 (371)
..|.+|..-|-+...+.. -.-.|..|+...+.
T Consensus 6 ~~c~~c~~~n~~p~~~~~--~~~~~~~~~~~~~~ 37 (148)
T 3p2a_A 6 TVCTACMATNRLPEERID--DGAKCGRCGHSLFD 37 (148)
T ss_dssp EECTTTCCEEEEESSCSC--SCCBCTTTCCBTTC
T ss_pred EECcccccccCCCCcccc--cCCcchhcCCcccc
Confidence 569999999877654432 24468888886544
No 49
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.52 E-value=37 Score=26.33 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=21.3
Q ss_pred eeecccccc---------ccCccCCCCCCcc--eeEcCCCCC
Q 017446 294 ALICGNCHM---------HNGESIRKDIPTL--LLLNNEITC 324 (371)
Q Consensus 294 ALIC~~C~~---------HNGlA~keefe~i--~y~C~~C~~ 324 (371)
.-+|..|.. .||.++--.|+.+ .|+||.||.
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 467888853 3455555456664 489999997
No 50
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.49 E-value=62 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=13.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 017446 38 GDDFEKRLQYISKEEAAILARV 59 (371)
Q Consensus 38 ~~~fEK~L~~L~~kI~~~~~rL 59 (371)
-+++|+++.+|++|+....+.+
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777765544443
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.86 E-value=91 Score=21.06 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 017446 44 RLQYISKEEAAILAR 58 (371)
Q Consensus 44 ~L~~L~~kI~~~~~r 58 (371)
+|.+|+++.+..+.+
T Consensus 21 elaaleselqalekk 35 (48)
T 1g6u_A 21 ELAALESELQALEKK 35 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 52
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=21.57 E-value=32 Score=28.91 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=9.8
Q ss_pred eeEcCCCCCcCC
Q 017446 316 LLLNNEITCTTP 327 (371)
Q Consensus 316 ~y~C~~C~~~np 327 (371)
-+.||.||..+-
T Consensus 107 ~~~CP~Cgs~~~ 118 (139)
T 3a43_A 107 FLACPKCGSHDF 118 (139)
T ss_dssp GCSCSSSSCCCE
T ss_pred CCcCccccCCcc
Confidence 578999998764
No 53
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=21.35 E-value=43 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=20.5
Q ss_pred eeccccccc--cCc---cCCC--CCCcceeEcCCCCCcCC
Q 017446 295 LICGNCHMH--NGE---SIRK--DIPTLLLLNNEITCTTP 327 (371)
Q Consensus 295 LIC~~C~~H--NGl---A~ke--efe~i~y~C~~C~~~np 327 (371)
.||.+|.+. -|. +.-+ ....+.|.|-.||+..-
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR 105 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMR 105 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 489999652 221 1111 12479999999998743
No 54
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=21.27 E-value=26 Score=22.20 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=11.5
Q ss_pred eEcCCCCCcCCcchhhhhhcc
Q 017446 317 LLNNEITCTTPKSIVLFMKCS 337 (371)
Q Consensus 317 y~C~~C~~~np~~~~~~~~~~ 337 (371)
|.|+.|+..|=++-+.-.+|+
T Consensus 6 W~C~~C~~~Nfa~r~~C~~C~ 26 (32)
T 2lk0_A 6 WLCNKCCLNNFRKRLKCFRCG 26 (32)
T ss_dssp EECTTTCCEEETTCCBCTTTC
T ss_pred CCcCcCcCCcChhcceecCCC
Confidence 556666666655544444443
No 55
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.96 E-value=41 Score=23.50 Aligned_cols=31 Identities=10% Similarity=-0.107 Sum_probs=20.1
Q ss_pred CcceeeccccccccCccCCCCCCcceeEcCCCCCc
Q 017446 291 QSYALICGNCHMHNGESIRKDIPTLLLLNNEITCT 325 (371)
Q Consensus 291 ~ryALIC~~C~~HNGlA~keefe~i~y~C~~C~~~ 325 (371)
.|----|.+|.+--=|+.- .-.++|+.||+.
T Consensus 16 ~~~~k~CP~CG~~~fm~~~----~~R~~C~kCG~t 46 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVFMADH----GDRWACGKCGYT 46 (50)
T ss_dssp ECSSEECSSSCSSCEEEEC----SSEEECSSSCCE
T ss_pred EEecccCCCCCCceEEecC----CCeEECCCCCCE
Confidence 3445569999773324432 247899999975
No 56
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.70 E-value=3.3e+02 Score=21.87 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=4.0
Q ss_pred HHHHHhcC
Q 017446 162 QQLIQRYD 169 (371)
Q Consensus 162 k~LLekYd 169 (371)
+++.++.+
T Consensus 121 ~~l~~~l~ 128 (139)
T 3eff_K 121 RALHERFD 128 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555544
No 57
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=20.57 E-value=84 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcChHHHHHHHHh
Q 017446 137 TLERLRVERKAKIDELKERTNYYTTQQLIQR 167 (371)
Q Consensus 137 kL~~L~~qkkk~IeelKe~t~Y~~Tk~LLek 167 (371)
+|..|-.++.+.|..| .=+.+++|+||
T Consensus 22 ~L~~LL~kREkLlk~L----~~e~l~~i~Ek 48 (79)
T 2fzt_A 22 TLLSLLNKRKELMEGL----PKDKLSEILEK 48 (79)
T ss_dssp HHHHHHHHHHHHHTTS----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC----cHHHHHHHHHH
Confidence 4555555555555444 22344555443
No 58
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.51 E-value=38 Score=20.80 Aligned_cols=20 Identities=5% Similarity=0.262 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 017446 138 LERLRVERKAKIDELKERTN 157 (371)
Q Consensus 138 L~~L~~qkkk~IeelKe~t~ 157 (371)
.+++|.|-+..+|++|++.+
T Consensus 3 ~e~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp HHHTTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 36788888999999998765
No 59
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=20.47 E-value=26 Score=33.41 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred eEcCCCCCcCCcchhhhhhccCCccceeeeeehHH
Q 017446 317 LLNNEITCTTPKSIVLFMKCSGLKKTIFSFVVCVK 351 (371)
Q Consensus 317 y~C~~C~~~np~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
|.|+.||+.+-.-.|.-..+.+..-|+ |++|++
T Consensus 269 ~~C~~C~~~~~~~~q~Q~rsaDe~~t~--f~~C~~ 301 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQTRSADEPLTT--FCTCEA 301 (309)
T ss_pred ccCCCCCCCeeEEEEeecccCCCCCcE--EEEeCC
No 60
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=20.12 E-value=39 Score=28.67 Aligned_cols=45 Identities=7% Similarity=0.073 Sum_probs=26.5
Q ss_pred ceeeccccccccCccCCCCCCcceeEcCCCCCcCCcchhhhhhccCCccceeeeeeh
Q 017446 293 YALICGNCHMHNGESIRKDIPTLLLLNNEITCTTPKSIVLFMKCSGLKKTIFSFVVC 349 (371)
Q Consensus 293 yALIC~~C~~HNGlA~keefe~i~y~C~~C~~~np~~~~~~~~~~~~~~~~~~~~~~ 349 (371)
.+--|..|..+ ..++.. .|+.|+..+-... ..|+...|++||.|.
T Consensus 46 ~~~rC~~CG~~--~fPPr~------~Cp~C~s~~~e~v----~ls~g~GtV~S~Tvv 90 (145)
T 2gnr_A 46 IGSKCSKCGRI--FVPARS------YCEHCFVKIENYV----EINKDEAYVDSYTII 90 (145)
T ss_dssp EEEECTTTCCE--EESCCS------EETTTTEECCEEE----ECCGGGCEEEEEEEE
T ss_pred EEEEECCCCcE--EeCCCC------CCCCCCCCccEEE----EccCCcEEEEEEEEE
Confidence 45567777554 233332 8999998753332 234346677777653
Done!