Query 017447
Match_columns 371
No_of_seqs 139 out of 1064
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017447.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017447hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ww9_A SEC sixty-one protein h 100.0 3.9E-87 1.3E-91 683.5 26.3 358 3-365 109-474 (490)
2 2wwb_A Protein transport prote 100.0 1.3E-85 4.6E-90 670.6 27.0 363 5-368 107-470 (476)
3 3mp7_A Preprotein translocase 100.0 3.6E-83 1.2E-87 653.1 23.6 346 3-366 103-458 (482)
4 1rh5_A Preprotein translocase 100.0 6.6E-80 2.3E-84 622.8 32.9 325 3-366 100-426 (436)
5 3dl8_G Preprotein translocase 100.0 4E-74 1.4E-78 580.0 25.2 297 3-366 105-422 (429)
6 2zjs_Y Preprotein translocase 100.0 8.5E-74 2.9E-78 577.5 26.5 297 4-366 105-423 (434)
7 3j01_A Preprotein translocase 100.0 2.9E-73 1E-77 574.2 20.4 298 3-364 102-419 (435)
8 3din_C Preprotein translocase 100.0 7.6E-73 2.6E-77 570.6 23.0 290 3-366 109-417 (431)
9 2nsc_A Trigger factor, TF; cha 60.7 4.5 0.00016 32.3 2.5 33 282-314 19-58 (109)
10 1p9y_A Trigger factor, TF; alp 53.4 7.1 0.00024 31.8 2.5 22 294-315 40-62 (121)
11 2d3o_1 Trigger factor, TF; rib 46.6 6 0.00021 31.7 1.0 21 294-314 36-57 (112)
12 3gty_X Trigger factor, TF; cha 22.8 32 0.0011 34.0 1.9 36 281-316 18-60 (433)
13 1t11_A Trigger factor, TF; hel 22.5 43 0.0015 32.6 2.7 34 282-315 22-62 (392)
14 1w26_A Trigger factor, TF; cha 22.0 43 0.0015 33.1 2.6 21 295-315 38-59 (432)
15 2wwb_A Protein transport prote 21.0 58 0.002 32.8 3.3 59 258-318 357-417 (476)
No 1
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=3.9e-87 Score=683.53 Aligned_cols=358 Identities=28% Similarity=0.471 Sum_probs=315.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHH
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA 82 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~ 82 (371)
.|+||||+|++|||+|+++|++||++++.++.++ .+.++...+++++||++||+++|||||+||||||+|||+||+|+
T Consensus 109 ge~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~--~~~~~~~~~~ivl~L~~Gt~~lmwLgE~It~G~GIGnGiSLiI~ 186 (490)
T 2ww9_A 109 IQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFG--DDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINT 186 (490)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHH
Confidence 4899999999999999999999999999875443 23444567789999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccCCCCc--ccchhHHHHHHHH-HhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcce
Q 017447 83 TNICENIIWKAFSPTTINSGRGA--EFEGAVIALFHLL-ITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGF 159 (371)
Q Consensus 83 agI~~~l~~~~~~~~~~~~~~~~--~~~G~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~ 159 (371)
+|||+++|++++++.+.+.++++ |++|+++++++.+ .+.+++.+.+.++++|.++|+++.+++++++++++||+|++
T Consensus 187 agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~~r~~lp~l~~l~~~l~vi~~vV~~q~~ 266 (490)
T 2ww9_A 187 VVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLTTTIIVLAIAIIVCYLQSV 266 (490)
T ss_dssp HHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHHhhccccHHHHHHHHHHHHHHHheeeee
Confidence 99999999999999776666554 7899999887765 23333333344678888889988899999999999999999
Q ss_pred EEEEeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHH----HHhhhcCCCccccccccccccccCCCccccc
Q 017447 160 RVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQ----LMYRRYSGNFFVNLLGKWKESEYSGGQYVPV 235 (371)
Q Consensus 160 ~~~IPi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~----~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 235 (371)
||||||||+|++|+++|+|+|+|||||||+|||||++++|.++++ +++++++++...++++.|.+. .++++|+
T Consensus 267 ~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~~~ 343 (490)
T 2ww9_A 267 RVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENA---NNLLAVP 343 (490)
T ss_dssp CEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCCCCSSSCTTSBCCSCC---SSSSCSC
T ss_pred EEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccccchhcc---ccccchh
Confidence 999999999999999999999999999999999999999999888 665433333233455667532 3567899
Q ss_pred ccccccccCCCccchhccC-chHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhh
Q 017447 236 GGIAYYITAPSSLADMAAN-PFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYI 314 (371)
Q Consensus 236 ~gi~~~~s~~~~~~~~~~~-p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg~T~~yL~k~i 314 (371)
+++++|++||+++.+.+.+ |+|.++|.++++++|++|||||++++++||||+||||||||++|||+|||+|+|||+|++
T Consensus 344 ~~~~~~l~~p~~~~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG~T~~yL~~vi 423 (490)
T 2ww9_A 344 TFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVI 423 (490)
T ss_dssp SSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCCCSTTHHHHHH
T ss_pred HHHHHHhCCccchhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCchhHHHHHHHH
Confidence 9999999999988777788 999999999999999999999999977999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhh
Q 017447 315 PTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASE 365 (371)
Q Consensus 315 ~r~t~~Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e 365 (371)
+|+|++||+|++++|++|++++..|||||+||+|||++|++||+++|+.++
T Consensus 424 ~rit~~Ga~~L~~lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~ 474 (490)
T 2ww9_A 424 PIAAVTGASVLSLITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQS 474 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999877899999999999999999999998766
No 2
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=1.3e-85 Score=670.65 Aligned_cols=363 Identities=68% Similarity=1.137 Sum_probs=323.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHHHH
Q 017447 5 IVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATN 84 (371)
Q Consensus 5 ~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~ag 84 (371)
.||||+|++|||+|+++|++||.+++.++.++...+.++...+++++||++||+++|||||+||||||+|||+||+|++|
T Consensus 107 ~gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~~lmwL~E~It~g~GiGnGiSLiI~ag 186 (476)
T 2wwb_A 107 KDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATN 186 (476)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHHH
Confidence 39999999999999999999999998855454333445556778999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcceEEEEe
Q 017447 85 ICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLP 164 (371)
Q Consensus 85 I~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~~~~IP 164 (371)
||++++|+.|+|.+.+.+++.|++|+++++++.+.+++++.+++.++|+|.++|+++.+++++++++++||+|++|||||
T Consensus 187 I~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~~~~~ll~~~~v~~~vV~~q~~~rrIP 266 (476)
T 2wwb_A 187 ICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLP 266 (476)
T ss_dssp HHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHHHHHHHHHHHHHHHHHHHHHHCCBCCC
T ss_pred HHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccchHHHHHHHHHHHhheeEEEEEEEEEE
Confidence 99999999999976666777788999888887665566666777888888877777788888888999999999999999
Q ss_pred eeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccc-cCCCccccccccccccc
Q 017447 165 VRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESE-YSGGQYVPVGGIAYYIT 243 (371)
Q Consensus 165 i~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~gi~~~~s 243 (371)
|||+|.+|+++|+|+|+||+||||+|||||++++|++++++++++++++...++++.|.+.+ +..++++|++|+++|++
T Consensus 267 v~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~ 346 (476)
T 2wwb_A 267 IKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLS 346 (476)
T ss_dssp CCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTS
T ss_pred EEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcC
Confidence 99999999999999999999999999999999999999998765555444455666775421 11257899999999999
Q ss_pred CCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccchHHHHHHhhhhhHhhHHHH
Q 017447 244 APSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIPTAAAFGGM 323 (371)
Q Consensus 244 ~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg~T~~yL~k~i~r~t~~Ga~ 323 (371)
||++..+.+.+|+|.++|.++++++|++|+++|.+++++||||+||||||||++|||+||.+|+|||+|+++|+|++||+
T Consensus 347 ~p~~~~~~~~~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp~~T~~yL~~vi~rit~~Ga~ 426 (476)
T 2wwb_A 347 PPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGL 426 (476)
T ss_dssp CCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCTTTTTHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99887777789999999999999999999999999977999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhccC
Q 017447 324 CIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGF 368 (371)
Q Consensus 324 ~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~~~ 368 (371)
|++++|++|++++..+||||+||+|||+++++||++||+. |||.
T Consensus 427 ~l~~lavlp~~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~-~~~~ 470 (476)
T 2wwb_A 427 CIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQS-EVGS 470 (476)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHT-CCSS
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh-hhhh
Confidence 9999999999998888999999999999999999999999 9975
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=3.6e-83 Score=653.13 Aligned_cols=346 Identities=34% Similarity=0.664 Sum_probs=265.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHH
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQ-LGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFI 81 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~-~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI 81 (371)
.|+||||+|++|||+|+++|++||.+++.++.+++... .++...+++++||++||+++|||||+||| ||+|||+||+|
T Consensus 103 ge~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~~lmwL~E~It~-~GiGnGiSLiI 181 (482)
T 3mp7_A 103 NPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISLFI 181 (482)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHHHHHHHHHHHHH-HSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccccHHHH
Confidence 48999999999999999999999999998765543211 23346788999999999999999999999 99999999999
Q ss_pred HHHHHHHHhhhhhccccccCC-----CCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHHh
Q 017447 82 ATNICENIIWKAFSPTTINSG-----RGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP--NVTNLLATVLIFLIVI 154 (371)
Q Consensus 82 ~agI~~~l~~~~~~~~~~~~~-----~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~l~~~i~v~~~vV 154 (371)
++|||+++|++++++.+.+.+ ++.|++|.++.+++.+.+ +.+.++++| ++| +++.+++++++++++|
T Consensus 182 ~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~-----~~l~~~~~~-~lp~~~l~~l~~~l~v~~~vV 255 (482)
T 3mp7_A 182 AAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-----GDLWGAIYR-GGSAPDMLSVVATIVVFFIVV 255 (482)
T ss_dssp HHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHH-----CCSCSSCCC-SSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhc-----chhhHHHhh-ccchhHHHHHHHHHHHHHHhh
Confidence 999999999999988543322 345789998887765532 223345666 667 7888889999999999
Q ss_pred hhcceEEEEeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccc
Q 017447 155 YFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVP 234 (371)
Q Consensus 155 ~l~~~~~~IPi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 234 (371)
|+|++||||||||+|++ +++|+|+|+|||||||+|||||++++|+++++++.+. ..+++++|++. ..+|
T Consensus 256 ~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~-----~~~~l~~~~~~-----~~~~ 324 (482)
T 3mp7_A 256 YFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL-----GHPWLGRFDPT-----TGSP 324 (482)
T ss_dssp HHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT-----SCCSSBCCCCT-----TSCC
T ss_pred eeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc-----cchhhhhhccc-----cccc
Confidence 99999999999999987 8999999999999999999999999999999987532 12356666432 2458
Q ss_pred cccccccccCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-h-HHHHHHh
Q 017447 235 VGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-N-LQKELNR 312 (371)
Q Consensus 235 ~~gi~~~~s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~-T~~yL~k 312 (371)
++++++|++||.+..+++++|+|.++|.++++++|++|||||+++|++||||+||||||||++|||+||| + |+|||+|
T Consensus 325 ~~g~~~~l~p~~s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~~yL~~ 404 (482)
T 3mp7_A 325 ISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQR 404 (482)
T ss_dssp CCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTCC----
T ss_pred chhHHHHhCCcccHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHHHHHHH
Confidence 8999999999988877788999999999999999999999999999999999999999999999999999 6 7999999
Q ss_pred hhhhHhhHHHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhc
Q 017447 313 YIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 366 (371)
Q Consensus 313 ~i~r~t~~Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~ 366 (371)
+++|+|++||+|++++|++|++++..|||||+||+|||++|++||+++|+.+|+
T Consensus 405 vi~rit~~Ga~~L~~iavlp~~l~~~ggGTslLI~VgV~~~~~~qi~s~~~~~~ 458 (482)
T 3mp7_A 405 YIPYVTFWGSLTVALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQITEM 458 (482)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccCCceeeeeeHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999889999999999999999999999998775
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=6.6e-80 Score=622.79 Aligned_cols=325 Identities=37% Similarity=0.713 Sum_probs=270.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchhHHHHH
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIA 82 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGiSLiI~ 82 (371)
.|+||||+|++|||+|+++|++||.+++.++.+.+ .++.+.++++++|++||+++|||||+||| ||+|||+||+|+
T Consensus 100 ge~gr~ki~~~tR~lti~la~iQa~~~~~~g~~~~---~~~~~~~~~vl~L~~Gt~~lmwL~E~It~-~GiGnGiSLiI~ 175 (436)
T 1rh5_A 100 IPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGI---LTPLLAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIA 175 (436)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CchHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccccHHHHH
Confidence 48999999999999999999999999998654322 33446778999999999999999999999 999999999999
Q ss_pred HHHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhcceEEE
Q 017447 83 TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVV 162 (371)
Q Consensus 83 agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~~~~~~ 162 (371)
+|||+++|++++++ .|+++++++.+.+++. +..+++.+++++++++++||+|++|||
T Consensus 176 ~gI~~~lp~~~~~~-----------~G~i~~~~~~~~~~~~------------~~~~l~~l~~~l~v~~~vV~~~~~~rr 232 (436)
T 1rh5_A 176 AGVSQTIFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPIIGTIIVFLMVVYAECMRVE 232 (436)
T ss_dssp HHHHHHHHHHHHST-----------TCHHHHHHHHTTTTCC------------CGGGTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcc-----------cchHHHHHHHHhcccc------------hHHHHHHHHHHHHHHHHHHhhcceEEE
Confidence 99999999999986 3788887764332211 111255666778888999999999999
Q ss_pred EeeeeccCCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCCcccccccccccc
Q 017447 163 LPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYI 242 (371)
Q Consensus 163 IPi~~~~~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi~~~~ 242 (371)
|||||+|.+|+++|+|+|+||+||||+|||||++++|+++++++++. +. +++++|+ +.+|++|++||+
T Consensus 233 IPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~-~~----~~~g~~~-------~~~~~~gl~yyl 300 (436)
T 1rh5_A 233 IPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM-GI----PILGHYE-------GGRAVDGIAYYL 300 (436)
T ss_dssp EECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT-SC----CTTCCBC-------SSSBSSSTTGGG
T ss_pred EEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc-Cc----chhhhcc-------cccccccchhhc
Confidence 99999999999999999999999999999999999999999977432 11 2455662 257999999999
Q ss_pred cCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-h-HHHHHHhhhhhHhhH
Q 017447 243 TAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-N-LQKELNRYIPTAAAF 320 (371)
Q Consensus 243 s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~-T~~yL~k~i~r~t~~ 320 (371)
+||++..+...+|.|..+|.++++++|++|||||+++|++||||+||||||||++|||+||| + |+|||+|+++|+|++
T Consensus 301 ~pp~~~~~~~~~p~~~~~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~ 380 (436)
T 1rh5_A 301 STPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVM 380 (436)
T ss_dssp CCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHH
Confidence 99886554555788888999999999999999999999999999999999999999999999 7 799999999999999
Q ss_pred HHHHHHHHHHhHHHhcccCcccchhHHHHHHHHHHHHHHHHhhhhc
Q 017447 321 GGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 366 (371)
Q Consensus 321 Ga~~l~~ia~lp~~~g~~ggGtslLI~Vgv~~~~~~qi~~e~~~e~ 366 (371)
||+|++++|++|++++..|||||+||+|||++|++||+++|..+|+
T Consensus 381 Ga~~l~~ia~lp~~l~~~~gGTslLI~VgV~~~~~~qi~~~~~~~~ 426 (436)
T 1rh5_A 381 SSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERTSEL 426 (436)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998778999999999999999999999998775
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=4e-74 Score=579.96 Aligned_cols=297 Identities=18% Similarity=0.274 Sum_probs=251.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCc
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMY-------GSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 75 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGn 75 (371)
.|+||||+|++|||+|+++|++||.+++.++.. +...+.++...++++++|++||+++|||||+||| ||+||
T Consensus 105 ge~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGn 183 (429)
T 3dl8_G 105 GDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITE-KGIGN 183 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-HTCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcCc
Confidence 379999999999999999999999999876543 1122344557789999999999999999999999 99999
Q ss_pred hhHHHHHHHHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhh
Q 017447 76 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIY 155 (371)
Q Consensus 76 GiSLiI~agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~ 155 (371)
|+||+|++|||+++|++++++.+...+ + + .|.+ ++++.+++++++++++||
T Consensus 184 GiSliI~~gI~~~lp~~~~~~~~~~~~-g-~-~~~~--------------------------~~l~~l~~~l~vi~~vV~ 234 (429)
T 3dl8_G 184 GASLIIFAGIVANFPNAVIQFYEKVKT-G-D-IGPL--------------------------TLLLIIALIIAIIVGIVY 234 (429)
T ss_dssp HHHHHHHHHHHHHTTTTSSCCCCSSSC-S-S-SCTH--------------------------HHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHhcC-C-c-chHH--------------------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987532111 1 1 1111 235667778888899999
Q ss_pred hcceEEEEeeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccC
Q 017447 156 FQGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYS 228 (371)
Q Consensus 156 l~~~~~~IPi~~~~~-------~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~ 228 (371)
+|++||||||||+|+ +|+++|+|+|+|||||||+|||||++++|.++++++. + +|.
T Consensus 235 ~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~----~--------~~~----- 297 (429)
T 3dl8_G 235 VQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQ----N--------PFI----- 297 (429)
T ss_dssp SCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCS----S--------CCC-----
T ss_pred heeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHcc----h--------HHH-----
Confidence 999999999999973 5799999999999999999999999999999998652 1 232
Q ss_pred CCcccccccccccccCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHH
Q 017447 229 GGQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQ 307 (371)
Q Consensus 229 ~~~~~~~~gi~~~~s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~ 307 (371)
+++.+|++|+ +|+ |.++++++|++|||||+++ ++||||+||||||||++|||+||| +|+
T Consensus 298 -------~~~~~~l~~~--------~~~----y~~~y~~lii~Fs~fy~~i-~~np~diA~~lkk~G~~IpGiRpG~~T~ 357 (429)
T 3dl8_G 298 -------KVIADMFQPG--------AIF----YNFLYVTFIVFFTYFYTAV-LINPVELAENLHKAGAFIPGVRPGQDTV 357 (429)
T ss_dssp -------CTTTTTTTTT--------HHH----HHHHHHHHHHHHHHHHHTC-TTHHHHHHHTCCCCBSSSBCCCCHHHHH
T ss_pred -------HHHHHHcCCC--------chH----HHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHCCCcCCCCCCChhHH
Confidence 2356777763 344 5555555789999999999 799999999999999999999999 999
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHhHHHhcc-cC-----cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017447 308 KELNRYIPTAAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETFEKERASEL 366 (371)
Q Consensus 308 ~yL~k~i~r~t~~Ga~~l~~ia~lp~~~g~-~g-----gGtslLI~Vgv~~~~~~qi~~e~~~e~ 366 (371)
|||+|+++|+|++||+|++++|++|++++. .| ||||+||+|||++|++||++++..++.
T Consensus 358 ~yL~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~l~~~~ 422 (429)
T 3dl8_G 358 KYLERIINRLIFFGALFLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQIETYLIQKK 422 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCCCSTHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 44 899999999999999999999987653
No 6
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=8.5e-74 Score=577.55 Aligned_cols=297 Identities=21% Similarity=0.289 Sum_probs=246.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCC--ccc--cchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCch
Q 017447 4 KIVPYCKNGAQKLLGIIIAIGEAVAYVLSG---MYGS--VNQ--LGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSG 76 (371)
Q Consensus 4 e~gr~k~~~~qr~lti~la~iQa~~~~~~~---~~~~--~~~--~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnG 76 (371)
|+||||+|++|||+|+++|++||++++.+. .++. ..+ .++.+.++++++|++||+++|||||+||| ||+|||
T Consensus 105 e~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwLgE~It~-~GIGnG 183 (434)
T 2zjs_Y 105 EEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITE-YGIGNG 183 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccc
Confidence 789999999999999999999999999863 1221 123 44556778999999999999999999999 999999
Q ss_pred hHHHHHHHHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhh
Q 017447 77 ISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYF 156 (371)
Q Consensus 77 iSLiI~agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l 156 (371)
+||+|++|||+++|+++.+..+.. + .|.+ ++. ..++.+++++++++++||+
T Consensus 184 iSliI~~gIv~~lp~~~~~~~~~~--~----~~~~-~~~----------------------~~~~~l~~~~~vi~~vV~~ 234 (434)
T 2zjs_Y 184 TSLIIFAGIVVEWLPQILRTIGLI--R----TGEV-NLV----------------------AFLFFLAFIVLAFAGMAAV 234 (434)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTT--T----TTSS-CHH----------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh--c----cCcc-cHH----------------------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999999876653210 0 0000 000 0134556677788899999
Q ss_pred cceEEEEeeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCC
Q 017447 157 QGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG 229 (371)
Q Consensus 157 ~~~~~~IPi~~~~~-------~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~ 229 (371)
|++||||||||+|+ +|+++|+|+|+|||||||+|||||++++|.++++++. ++ .|.
T Consensus 235 ~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~---~~--------~~~------ 297 (434)
T 2zjs_Y 235 QQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQ---DN--------PVL------ 297 (434)
T ss_dssp HHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCT---TC--------HHH------
T ss_pred eeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhc---cc--------hHH------
Confidence 99999999999984 2789999999999999999999999999999998653 11 232
Q ss_pred CcccccccccccccCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHH
Q 017447 230 GQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQK 308 (371)
Q Consensus 230 ~~~~~~~gi~~~~s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~~ 308 (371)
+++.+|++|+ +|+|.++|.+ ++++|||||+++ ++||||+||||||||++|||+||| +|+|
T Consensus 298 ------~~~~~~l~~~--------~~~y~~~y~~----lii~Fs~fyt~i-~~np~diA~nLkk~G~~IpGiRpG~~T~~ 358 (434)
T 2zjs_Y 298 ------QGIANFFNPT--------RPSGLFIEVL----LVILFTYVYTAV-QFDPKRIAESLREYGGFIPGIRPGEPTVK 358 (434)
T ss_dssp ------HHHHHHHCSS--------SHHHHHHHHH----HHHHHHHHHHHC-SSCHHHHHHHTTTTTEECTTBCSSHHHHH
T ss_pred ------HHHHHHcCCC--------ChHHHHHHHH----HHHHHHHHHHHH-ccCHHHHHHHHHHCCCccCCCCCChhHHH
Confidence 2356778764 5667666665 567999999999 799999999999999999999999 9999
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHhHHHhccc-C------cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017447 309 ELNRYIPTAAAFGGMCIGALTVLADFMGAI-G------SGTGILLAVTIIYQYFETFEKERASEL 366 (371)
Q Consensus 309 yL~k~i~r~t~~Ga~~l~~ia~lp~~~g~~-g------gGtslLI~Vgv~~~~~~qi~~e~~~e~ 366 (371)
||+|+++|+|++||+|++++|++|++++.. | ||||+||+|||++|++||+++|..+|+
T Consensus 359 yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~ 423 (434)
T 2zjs_Y 359 FLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRS 423 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987644 3 899999999999999999999997664
No 7
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=2.9e-73 Score=574.18 Aligned_cols=298 Identities=18% Similarity=0.273 Sum_probs=249.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCccccchhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchh
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMY-----GSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGI 77 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGi 77 (371)
.|+||||+|++|||+|+++|++||.+++.++.. +...+.++...++++++|++||+++|||||+||| ||+|||+
T Consensus 102 ge~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGnGi 180 (435)
T 3j01_A 102 GESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITE-RGIGNGI 180 (435)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHHHHHHHHSTT-SCCSSSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccc
Confidence 488999999999999999999999999876532 1112334446778999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhhhhccccc-cCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhh
Q 017447 78 SLFIATNICENIIWKAFSPTTI-NSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYF 156 (371)
Q Consensus 78 SLiI~agI~~~l~~~~~~~~~~-~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l 156 (371)
||+|++|||+++|+++.+..+. +.+ +. +. . ..++.+++++++++++||+
T Consensus 181 SLiI~~gI~~~lp~~~~~~~~~~~~~---~~-~~----~----------------------~~l~~~~~~l~vi~~vV~~ 230 (435)
T 3j01_A 181 SIIIFAGIVAGLPPAIAHTIEQARQG---DL-HF----L----------------------VLLLVAVLVFAVTFFVVFV 230 (435)
T ss_dssp HHHHHHHHHHHSSTTSSSCCCSSSST---TS-SS----H----------------------HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---cc-hH----H----------------------HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998876421 111 10 00 0 0144566777788899999
Q ss_pred cceEEEEeeeeccC-------CCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCC
Q 017447 157 QGFRVVLPVRSKNA-------RGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSG 229 (371)
Q Consensus 157 ~~~~~~IPi~~~~~-------~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~ 229 (371)
|++||||||||+|+ +|+++|+|+|+|||||||+|||||++++|.++++++.+. +. ++|.
T Consensus 231 ~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~~~~-~~-------~~~~------ 296 (435)
T 3j01_A 231 ERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGG-TG-------WNWL------ 296 (435)
T ss_dssp CCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHSSSC-CC-------SSCC------
T ss_pred heeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHccCC-cc-------hhHH------
Confidence 99999999999973 578999999999999999999999999999999875321 00 1232
Q ss_pred CcccccccccccccCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHH
Q 017447 230 GQYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQK 308 (371)
Q Consensus 230 ~~~~~~~gi~~~~s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~~ 308 (371)
+++.+|++|+ +|+|.++|.+ ++++|+|||+++ ++||||+||||||||++|||+||| +|+|
T Consensus 297 ------~~~~~~l~~~--------~~~~~~~y~~----lii~F~~fyt~i-~~np~diA~~lkk~G~~IpGiRpG~~T~~ 357 (435)
T 3j01_A 297 ------TTISLYLQPG--------QPLYVLLYAS----AIIFFCFFYTAL-VFNPRETADNLKKSGAFVPGIRPGEQTAK 357 (435)
T ss_dssp ------SSSSCCCCSS--------GGGGTHHHHH----HHHHHHHHHHHH-SSCTTHHHHHTTSTTCSSSCCSSSSSSCS
T ss_pred ------HHHHHHcCCC--------CcHHHHHHHH----HHHHHHHHHHHH-ccCHHHHHHHHHHcCCcCCCcCCChhHHH
Confidence 3456778763 5888888876 567999999999 999999999999999999999999 9999
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHhHHHhccc------CcccchhHHHHHHHHHHHHHHHHhhh
Q 017447 309 ELNRYIPTAAAFGGMCIGALTVLADFMGAI------GSGTGILLAVTIIYQYFETFEKERAS 364 (371)
Q Consensus 309 yL~k~i~r~t~~Ga~~l~~ia~lp~~~g~~------ggGtslLI~Vgv~~~~~~qi~~e~~~ 364 (371)
||+|+++|+|++||+|++++|++|++++.. .||||+||+|||++|++||+++...+
T Consensus 358 yL~~vi~rit~~Ga~~L~~iavlP~~l~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l~~ 419 (435)
T 3j01_A 358 YIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMS 419 (435)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHTTSCCSSSSSSCCHHHHHTHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeecccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753 48999999999999999999988744
No 8
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=7.6e-73 Score=570.57 Aligned_cols=290 Identities=17% Similarity=0.205 Sum_probs=246.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---c-cccc-hhhHHHHHHHHHHhHHHHHHHHHHhhhccccCchh
Q 017447 3 AKIVPYCKNGAQKLLGIIIAIGEAVAYVLSGMYGS---V-NQLG-VGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGI 77 (371)
Q Consensus 3 ~e~gr~k~~~~qr~lti~la~iQa~~~~~~~~~~~---~-~~~~-~~~~~~~~~~L~aGt~~l~wL~E~itkg~GiGnGi 77 (371)
.|+||||+|++|||+|+++|++||.+++.++..+. . .+.+ +...++++++|++||+++|||||+||| ||+|||+
T Consensus 109 ge~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~lmwL~E~It~-~GiGnGi 187 (431)
T 3din_C 109 GEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITE-KGIGNGI 187 (431)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCTTHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcccch
Confidence 38999999999999999999999999997654321 1 1233 457789999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhhhhhccccccCCCCcccchhHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHHHHHHHHHHHhhhc
Q 017447 78 SLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQ 157 (371)
Q Consensus 78 SLiI~agI~~~l~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~i~v~~~vV~l~ 157 (371)
||+|++|||+++|++++++.+ + + .|.+ ++++.+++++++++++||+|
T Consensus 188 SliI~~gI~~~lp~~~~~~~~---~---~-~~~~--------------------------~~l~~l~~~l~vi~~vV~~~ 234 (431)
T 3din_C 188 SILIFAGIVARYPSYIRQAYL---G---G-LNLL--------------------------EWIFLIAVALITIFGIILVQ 234 (431)
T ss_dssp HHHHHHHHHHHSTTSSSCCSS---C---C-SCTH--------------------------HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc---c---c-ccHH--------------------------HHHHHHHHHHHHHHHHHhhe
Confidence 999999999999999988642 1 1 1211 22556777888889999999
Q ss_pred ceEEEEeeeecc-------CCCCCcceeeeeccccchhHHHHHHHHHHHHHHHHHHhhhcCCCccccccccccccccCCC
Q 017447 158 GFRVVLPVRSKN-------ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGG 230 (371)
Q Consensus 158 ~~~~~IPi~~~~-------~~g~~s~iPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 230 (371)
++||||||||+| ++|+++|+|+|+|||||||+|||||++++|.++++++. + +|.
T Consensus 235 ~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~~----~--------~~~------- 295 (431)
T 3din_C 235 QAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITN----N--------ETL------- 295 (431)
T ss_dssp CBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSST----T--------CCC-------
T ss_pred eeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHcc----h--------HHH-------
Confidence 999999999998 46899999999999999999999999999999987541 1 231
Q ss_pred cccccccccccccCCCccchhccCchHHHHHHHHHHHHHHHhhhhhhhhcCCCHHHHHHHHHHcCCcccccccc-hHHHH
Q 017447 231 QYVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKE 309 (371)
Q Consensus 231 ~~~~~~gi~~~~s~~~~~~~~~~~p~~~iiY~~l~~~l~i~Fs~fy~~is~~~p~diA~~Lkk~g~~IpGiRpg-~T~~y 309 (371)
.+|++| .+|+ |.++++++|++|||||+++ ++||||+||||||||++|||+||| +|+||
T Consensus 296 --------~~~~~~--------~~~~----y~~~y~~lii~Fs~fy~~i-~~np~diA~~lkk~G~~IpGiRpG~~T~~y 354 (431)
T 3din_C 296 --------KNLFRA--------GGFL----YLLIYGLLVFFFTYFYSVV-IFDPREISENIRKYGGYIPGLRPGRSTEQY 354 (431)
T ss_dssp --------CCCSST--------THHH----HHHHHHHHHHHHHHHHHTC-TTHHHHHTTSCCCCBCSSCCCCCTTHHHHH
T ss_pred --------HHHcCC--------CcHH----HHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHCCCcCCCCCCChhHHHH
Confidence 234544 1344 5555555789999999999 799999999999999999999999 99999
Q ss_pred HHhhhhhHhhHHHHHHHHHHHhHHHhcc-cC-----cccchhHHHHHHHHHHHHHHHHhhhhc
Q 017447 310 LNRYIPTAAAFGGMCIGALTVLADFMGA-IG-----SGTGILLAVTIIYQYFETFEKERASEL 366 (371)
Q Consensus 310 L~k~i~r~t~~Ga~~l~~ia~lp~~~g~-~g-----gGtslLI~Vgv~~~~~~qi~~e~~~e~ 366 (371)
|+|+++|+|++||+|++++|++|++++. .| ||||+||+|||++|++||++++..++.
T Consensus 355 L~~vi~rit~~Ga~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~~~~ 417 (431)
T 3din_C 355 LHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMVMRH 417 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 44 899999999999999999999986653
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=60.69 E-value=4.5 Score=32.33 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhh
Q 017447 282 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYI 314 (371)
Q Consensus 282 ~~p~diA~~Lk------k~g~~IpGiRpg-~T~~yL~k~i 314 (371)
++++|+.+.+. +....|||+||| .-.+.+++..
T Consensus 19 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~y 58 (109)
T 2nsc_A 19 FGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKL 58 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCTTSCTTCCCHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHhccCCCCCcCCCCCCHHHHHHHH
Confidence 44555544443 245799999999 5555555554
No 10
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=53.41 E-value=7.1 Score=31.80 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=15.8
Q ss_pred cCCcccccccc-hHHHHHHhhhh
Q 017447 294 QQMVMPGHREA-NLQKELNRYIP 315 (371)
Q Consensus 294 ~g~~IpGiRpg-~T~~yL~k~i~ 315 (371)
....|||+||| .-.+.+++..-
T Consensus 40 k~v~ipGFRkGKvP~~vi~k~yG 62 (121)
T 1p9y_A 40 KKVRIDGLRKGKVPMNIVAQRYG 62 (121)
T ss_dssp TTCCCTTSCTTCSCHHHHHHHHH
T ss_pred hhCccCCcCCCCCCHHHHHHHHH
Confidence 45799999999 55565655543
No 11
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=46.55 E-value=6 Score=31.74 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=14.4
Q ss_pred cCCcccccccc-hHHHHHHhhh
Q 017447 294 QQMVMPGHREA-NLQKELNRYI 314 (371)
Q Consensus 294 ~g~~IpGiRpg-~T~~yL~k~i 314 (371)
....|||+||| .-.+.+++..
T Consensus 36 k~~~ipGFRkGKvP~~vi~k~y 57 (112)
T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENRV 57 (112)
T ss_dssp TTSCBTTBCTTCCCSTTHHHHT
T ss_pred hhCCCCCcCCCCCCHHHHHHHh
Confidence 45799999999 5444454444
No 12
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=22.83 E-value=32 Score=34.03 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhhh
Q 017447 281 GSSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIPT 316 (371)
Q Consensus 281 ~~~p~diA~~Lk------k~g~~IpGiRpg-~T~~yL~k~i~r 316 (371)
.++++|+.+.+. +....|||+||| .-.+.+++..-+
T Consensus 18 ~v~~~~~~~~~~~~~k~~~k~v~ipGFRkGKvP~~vi~k~yG~ 60 (433)
T 3gty_X 18 VFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLGE 60 (433)
T ss_dssp ECCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHTTSTT
T ss_pred EEcHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHhhH
Confidence 355666655553 346899999999 666777776665
No 13
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=22.45 E-value=43 Score=32.59 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=21.9
Q ss_pred CCHHHHHHHHH------HcCCcccccccc-hHHHHHHhhhh
Q 017447 282 SSARDVAKQLK------EQQMVMPGHREA-NLQKELNRYIP 315 (371)
Q Consensus 282 ~~p~diA~~Lk------k~g~~IpGiRpg-~T~~yL~k~i~ 315 (371)
++++|+.+.+. +....|||+||| .-.+.+++..-
T Consensus 22 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k~yG 62 (392)
T 1t11_A 22 VPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYG 62 (392)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHh
Confidence 45555555443 246899999999 65666655543
No 14
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=22.01 E-value=43 Score=33.08 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=15.1
Q ss_pred CCcccccccc-hHHHHHHhhhh
Q 017447 295 QMVMPGHREA-NLQKELNRYIP 315 (371)
Q Consensus 295 g~~IpGiRpg-~T~~yL~k~i~ 315 (371)
...|||+||| .-.+.+++..-
T Consensus 38 ~~~ipGFRkGKvP~~vi~~~yG 59 (432)
T 1w26_A 38 KVRIDGFRKGKVPMNIVAQRYG 59 (432)
T ss_dssp HTTCGGGCCSSSCHHHHHHHHC
T ss_pred hCCCCCcCCCCCCHHHHHHHHh
Confidence 4689999999 55565655543
No 15
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.00 E-value=58 Score=32.77 Aligned_cols=59 Identities=7% Similarity=-0.131 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCHH-HHHHHHHHcCCcccccccc-hHHHHHHhhhhhHh
Q 017447 258 ALFYLVFMLSACALFSKTWIEVSGSSAR-DVAKQLKEQQMVMPGHREA-NLQKELNRYIPTAA 318 (371)
Q Consensus 258 ~iiY~~l~~~l~i~Fs~fy~~is~~~p~-diA~~Lkk~g~~IpGiRpg-~T~~yL~k~i~r~t 318 (371)
.-+|.++++++.++|+|||+.. =++-. -=.|+..||=-.=-++=|| .- +-.+||+.|.-
T Consensus 357 ~p~~~~iY~~lii~f~~fyt~~-Wv~i~g~np~dvA~~Lkk~G~~IpGiRp-~~T~~yL~~vi 417 (476)
T 2wwb_A 357 DPVHAVVYIVFMLGSCAFFSKT-WIEVSGSSAKDVAKQLKEQQMVMRGHRE-TSMVHELNRYI 417 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH-HTTTSSCCHHHHHHHHHHHCTTTCCCCT-TTTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHcCCccCCCCc-HHHHHHHHHHH
Confidence 4679999999999999999866 22211 1124444443334444455 44 45555777643
Done!