RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017447
(371 letters)
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional.
Length = 474
Score = 642 bits (1657), Expect = 0.0
Identities = 264/360 (73%), Positives = 317/360 (88%), Gaps = 2/360 (0%)
Query: 11 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
GAQKLLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKG
Sbjct: 116 EGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKG 175
Query: 71 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
YGLGSGISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+E
Sbjct: 176 YGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKE 235
Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
AFYR +LPN+TNLLATVL+FL+VIYFQGFRV LP++S+ RGQQ SYPIKLFYTSN+PII
Sbjct: 236 AFYRPHLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPII 295
Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
LQ+ALVSNLYF SQ++YRR+ NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+S +D
Sbjct: 296 LQTALVSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPNSFSD 354
Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREA-NLQKE 309
+ +P H + Y+VF+L +CALFSKTWIEVSGSSA+DVAKQLK+Q M M G+R++ ++ +
Sbjct: 355 IINDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRV 414
Query: 310 LNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFF 369
LNRYIPTAA+FGGMCIGALT+LADF+GAIGSGTGILLAVTIIYQY+ETF KE+ F
Sbjct: 415 LNRYIPTAASFGGMCIGALTILADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYGFLF 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 292 bits (751), Expect = 9e-96
Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 22/359 (6%)
Query: 12 GAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGN--AILIIVQLCFAGIIVICLDELLQK 69
G QKLL I++ EA +VL+G +G L A+LI +QL GI++I LDEL+ K
Sbjct: 112 GLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSK 171
Query: 70 GYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALR 129
+G+GSGISLFI + + I F+ T G G + ALF + + N
Sbjct: 172 -WGIGSGISLFILAGVSQTIFVGLFNWLTGGQG---LPVGFIPALFSAITSGN----LTL 223
Query: 130 EAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPI 189
+ L+ T++IFLIV+Y + RV +P+ RG +G YP+K Y S +P+
Sbjct: 224 ALLLTTRGLLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPV 283
Query: 190 ILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLA 249
IL AL +N+ QL+ R + +LG Y P+ G+AYY++ P S
Sbjct: 284 ILVRALQANIQLFGQLLQRLG-----IPILG-----TYDSSGASPISGLAYYLSPPHSPY 333
Query: 250 DMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQ 307
D +P A+ Y +FM+ LF+ W+E +G + A+QL+ M +PG R ++
Sbjct: 334 DWIQDPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIE 393
Query: 308 KELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASEL 366
K L RYIP GG +G L VLAD +GA+G GTG+LL V+I+YQ +E +E+ E+
Sbjct: 394 KVLERYIPPVTVIGGAIVGLLAVLADLLGALGGGTGLLLTVSIVYQLYEEIAREQLMEM 452
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 234 bits (598), Expect = 1e-73
Identities = 102/365 (27%), Positives = 162/365 (44%), Gaps = 71/365 (19%)
Query: 11 NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
N + L +I+A +++ V++GMYG V G +LI++QL +IV+ L E + K
Sbjct: 97 NQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK- 155
Query: 71 YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
YG+G+GISL I I I PT + KVR L
Sbjct: 156 YGIGNGISLLIFAGIAATIPSGLLQPTEVRQ---------------------SKVRDLIS 194
Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS-----KNARGQQGSYPIKLFYTS 185
LP + L+AT+++F +V++ Q R +P++S Q P+KL Y
Sbjct: 195 FLQN--LPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAG 252
Query: 186 NMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP 245
+P+I SAL+SN ISQ + G A+++
Sbjct: 253 VIPVIFASALLSNPATISQFLNSNQ--------------------------GGAWFLNPI 286
Query: 246 SSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHREAN 305
SL+ ++P A+ YL+ FS ++E+ + D+AK LK+Q M +PG R
Sbjct: 287 LSLS--LSDPIGAILYLIL----IIFFSFFYVEL-QLNPEDMAKNLKKQGMFIPGIRPGK 339
Query: 306 -LQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGS--------GTGILLAVTIIYQYFE 356
+K L R IP G + +G + +L +F+GAIG GT +L+ V + ++
Sbjct: 340 MTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIVVGVAIDTYK 399
Query: 357 TFEKE 361
E E
Sbjct: 400 QLESE 404
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 228 bits (584), Expect = 2e-72
Identities = 102/360 (28%), Positives = 162/360 (45%), Gaps = 75/360 (20%)
Query: 11 NGAQKLLGIIIAIGEAVAYVL-SGMYGSVNQL-----GVGNAILIIVQLCFAGIIVICLD 64
+ L +++A+ +A+ VL G YG+ + G N +LI++QL + ++ L
Sbjct: 42 QQYTRYLTLVLALIQAIGIVLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLG 101
Query: 65 ELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDK 124
EL+ K YG+G+GISL I I +I W A+I LF LL +
Sbjct: 102 ELITK-YGIGNGISLIIFAGIVASIPW------------------AIINLFSLLSSAG-- 140
Query: 125 VRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS-----KNARGQQGSYPI 179
L Y + LLAT+ + L+V+Y Q R +P++ RGQ PI
Sbjct: 141 --GLLSILY-----LLLLLLATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPI 193
Query: 180 KLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIA 239
KL Y +PII S+L++N I+Q + + PV G+A
Sbjct: 194 KLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLW--------------------PVSGLA 233
Query: 240 YYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMP 299
YY+ P + Y++F + FS + G + +D+A+ LK+ +P
Sbjct: 234 YYL------------PIGSPVYILFYIVLIIFFSYFYT-AIGFNPKDIAENLKKSGGFIP 280
Query: 300 GHRE-ANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIG--SGTGILLAVTIIYQYFE 356
G R + +K LNR IP G + +G + VL D +GA+G GT +L+AV + +E
Sbjct: 281 GIRPGKSTEKYLNRVIPRLTFIGAIFLGLIAVLPDLLGALGGFGGTSLLIAVGVALDTYE 340
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 206 bits (527), Expect = 8e-63
Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 72/369 (19%)
Query: 11 NGAQKLLGIIIAIGEAVAYVLSGMY----GSVNQLGVGNAILIIVQLCFAGIIVICLDEL 66
+ L +++A+ +A+ VL G V G+ +LII+QL + ++ L E
Sbjct: 115 QQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQ 174
Query: 67 LQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVR 126
+ K G+G+GISL I I ++ F GA+
Sbjct: 175 ITK-RGIGNGISLIIFAGIVASLPSAIFGI-----------IGALPTG------------ 210
Query: 127 ALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRS---KNARGQQGSYPIKLFY 183
A + L + +L T+ I +V+Y + R +P++ ++ RGQ P+KL Y
Sbjct: 211 ----ALFLSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNY 266
Query: 184 TSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT 243
+P+I S+L+ I+Q + GG+AYY++
Sbjct: 267 AGVIPVIFASSLLLFPSTIAQF---------------------------LGNGGLAYYLS 299
Query: 244 APSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR- 302
+S++D + + Y+ + FS + E+ + ++A+ LK+ +PG R
Sbjct: 300 PLTSISDALS--PGSPVYIALYVVLIIFFSYFYTEIQF-NPEEIAENLKKSGGFIPGIRP 356
Query: 303 EANLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIG------SGTGILLAVTIIYQYFE 356
+ +K LNR IP G + +G + +L + +G G GT +L+ V + +E
Sbjct: 357 GKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYFGGTSLLIVVGVALDTYE 416
Query: 357 TFEKERASE 365
E E E
Sbjct: 417 QIEAELLME 425
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 30.5 bits (70), Expect = 1.5
Identities = 42/197 (21%), Positives = 72/197 (36%), Gaps = 51/197 (25%)
Query: 16 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCF---AG-IIVICLDELLQKGY 71
+L + +IG +A L+ M G + + + + AG + ++ L E + +
Sbjct: 121 VLAFVQSIG--IAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITE-R 177
Query: 72 GLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREA 131
G+G+GISL I I A A+ F
Sbjct: 178 GIGNGISLIIFAGIV------------------AGLPSAIGQTF---------------E 204
Query: 132 FYRQNLPNVTNLLATVLIFLIVIYF-----QGFR---VVLPVRSKNAR--GQQGSY-PIK 180
R ++ L +++FL VI F Q R V R + G Q SY P+K
Sbjct: 205 LARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLK 264
Query: 181 LFYTSNMPIILQSALVS 197
+ +P+I S+++
Sbjct: 265 VNMAGVIPVIFASSILL 281
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated.
Length = 417
Score = 30.0 bits (68), Expect = 2.0
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 43/186 (23%)
Query: 46 AILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGA 105
A+ I++ L +IV+ L EL+ + GLG+G SL I NI N+ P + S
Sbjct: 141 ALEIVLALTSGSMIVLWLSELITE-KGLGNGSSLLIFFNIVSNL------PKLLQS---- 189
Query: 106 EFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIV---IYFQGFRVV 162
LL + N+ ++ LL L F+ + I+ Q
Sbjct: 190 -----------LLFS------------LSANITILSILLLLFLFFITLIGIIFLQEAIRK 226
Query: 163 LPVRS-----KNARGQQGSY-PIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV 216
+P+ S K++R SY P++L MPII SAL+ +++ ++ ++
Sbjct: 227 IPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQFLLPLLS 286
Query: 217 NLLGKW 222
L
Sbjct: 287 LFLQLA 292
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 29.8 bits (68), Expect = 2.5
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 109 GAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRV 161
G V LF L I DK+ LR + Y N LL LI ++ G+ V
Sbjct: 6 GLVAVLFRLGI---DKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLV 55
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 29.4 bits (66), Expect = 4.1
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 180 KLFYTSNMPIILQSALVSNLYFISQ-LMYRRYSGNFFVNLLGKWKE 224
KL T +P Q A++ + Q L+ Y+ +F NL WK
Sbjct: 725 KLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFANLADIWKR 770
>gnl|CDD|220195 pfam09348, DUF1990, Domain of unknown function (DUF1990). This
family of proteins are functionally uncharacterized.
Length = 158
Score = 28.4 bits (64), Expect = 4.2
Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 99 INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQG 158
+ SGR FE A AL + R VR + P + L+ G
Sbjct: 25 LGSGREEVFERAAQALLSWRMFRLAGVRVIA--------PATPPEVGRT--VLLRARLGG 74
Query: 159 FRVVLPVR 166
V+ P R
Sbjct: 75 LWVLAPCR 82
>gnl|CDD|183230 PRK11613, folP, dihydropteroate synthase; Provisional.
Length = 282
Score = 28.6 bits (64), Expect = 5.1
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 245 PSSLADMAA-NPF-HALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR 302
P S +D N A+ + M++A A T I+V G S R PG
Sbjct: 25 PDSFSDGGTHNSLIDAVKHANLMINAGA----TIIDVGGESTR-------------PGAA 67
Query: 303 EANLQKELNRYIPTAAA 319
E ++++EL+R IP A
Sbjct: 68 EVSVEEELDRVIPVVEA 84
>gnl|CDD|237166 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 28.7 bits (65), Expect = 5.5
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 258 ALFYLVF-MLSACALFSKT-WIEVSGSSARDVAKQLKEQQMVMPGHREANLQKELNRYIP 315
AL+YLV L+A ALF +E R A + E + E+ IP
Sbjct: 333 ALYYLVHSTLAAAALFLLADLVE----RQRGAAADRLAVTPELYDLDEEEEE-EVGVAIP 387
Query: 316 TAAAFGGMCIGALTVL 331
A G+ +
Sbjct: 388 ATMALLGLLFFICALA 403
>gnl|CDD|239508 cd03415, CbiX_CbiC, Archaeal sirohydrochlorin cobalt chelatase
(CbiX) single domain. Proteins in this subgroup contain
a single CbiX domain N-terminal to a precorrin-8X
methylmutase (CbiC) domain. CbiX is a cobaltochelatase,
responsible for the chelation of Co2+ into
sirohydrochlorin, while CbiC catalyzes the conversion of
cobalt-precorrin 8 to cobyrinic acid by methyl
rearrangement. Both CbiX and CbiC are involved in
vitamin B12 biosynthesis.
Length = 125
Score = 27.5 bits (61), Expect = 6.0
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 212 GNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLADMAANPFHALFYLV 263
G V+ KW S+Y G + I Y+T P + + + ALFY V
Sbjct: 80 GELGVSRFYKWVMSKYGGKE------ILVYVTEPLADSPLVKL---ALFYRV 122
>gnl|CDD|183702 PRK12723, PRK12723, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 388
Score = 28.3 bits (63), Expect = 6.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 271 LFSKTWIEVSGSSARDVAKQ 290
LFS+ W+EVSG D+ +Q
Sbjct: 43 LFSRDWVEVSGYVRYDIGQQ 62
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial
oligomycin sensitivity protein) [Energy production and
conversion].
Length = 178
Score = 28.0 bits (63), Expect = 6.4
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 114 LFHLLITRNDKVRALREAFYRQNLPNVTNLLATVL 148
L ++ DK L F + P + N L +
Sbjct: 49 LSSPAVSAEDKKELLISIFKKIGDPLLQNFLRLLA 83
>gnl|CDD|224266 COG1347, NqrD, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrD [Energy production and conversion].
Length = 208
Score = 28.1 bits (63), Expect = 6.8
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 21 IAIGEAVAYV--LSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQK-GYGLGSGI 77
I +G AV V S + S+ + + N++ IIVQ+ +VI +D+ L+ Y L +
Sbjct: 42 IVMGIAVTLVTGFSSFFVSLIRNYIPNSVRIIVQMAIIASLVIVVDQFLKAYAYELSKQL 101
Query: 78 SLFIATNICENII 90
S+F+ I I+
Sbjct: 102 SVFVGLIITNCIV 114
>gnl|CDD|220467 pfam09911, DUF2140, Uncharacterized protein conserved in bacteria
(DUF2140). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 187
Score = 27.9 bits (63), Expect = 7.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 143 LLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPI 179
LLA L + V++F+ F V PV +A+ +
Sbjct: 10 LLALNLASIAVVFFRLFAPVEPVTKPSAKESKSDAVF 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.418
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,513,645
Number of extensions: 1961286
Number of successful extensions: 2905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2856
Number of HSP's successfully gapped: 71
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (26.8 bits)