RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017447
         (371 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  232 bits (592), Expect = 2e-73
 Identities = 117/355 (32%), Positives = 187/355 (52%), Gaps = 41/355 (11%)

Query: 11  NGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKG 70
            G QKLL II+   EAV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K 
Sbjct: 107 QGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK- 162

Query: 71  YGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALRE 130
           YG+GSGI LFIA  + + I   A  P           EG +    + LI           
Sbjct: 163 YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQG--------- 202

Query: 131 AFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPII 190
                N+  +  ++ T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+I
Sbjct: 203 ---VPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVI 259

Query: 191 LQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSSLAD 250
           L +AL +N+      +Y        + +LG ++           V GIAYY++ P  L+ 
Sbjct: 260 LAAALFANIQLWGLALY-----RMGIPILGHYEGGR-------AVDGIAYYLSTPYGLSS 307

Query: 251 MAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHR--EANLQK 308
           + ++P HA+ Y++ M+  C +F   W+E +G   + +AK++    M + G R  E  ++ 
Sbjct: 308 VISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEH 367

Query: 309 ELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERA 363
            L RYIP         +G L  +A+F+GA+G GTG+LL V+I+Y+ +E   +ER 
Sbjct: 368 RLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT 422


>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
           (Stoichactis helianthus) [TaxId: 6123]}
          Length = 175

 Score = 26.4 bits (58), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 235 VGGIAYYITAPSSLADMAANPFHALFY 261
           V   AYY+++ ++L  M + PF   +Y
Sbjct: 85  VAAFAYYMSSGNTLGVMFSVPFDYNWY 111


>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 41

 Score = 24.2 bits (53), Expect = 4.1
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 104 GAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLAT 146
           G+E+E  +  +  +   R   V ALR ++   N       L T
Sbjct: 1   GSEYETMLTEIMSMGYERERVVAALRASYN--NPHRAVEYLLT 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.418 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,364,821
Number of extensions: 61902
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 7
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)