BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017448
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 556 bits (1432), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/364 (72%), Positives = 308/364 (84%), Gaps = 6/364 (1%)
Query: 13 IPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVND 72
+PLLTPYKMG FNLSHR+VLAPLTR RSY N+PQPHA +YYSQRTT GGFLI EATGV+D
Sbjct: 10 VPLLTPYKMGRFNLSHRVVLAPLTRQRSYGNVPQPHAAIYYSQRTTPGGFLITEATGVSD 69
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
TAQGYQ+TPGIWT+E VEAWKPIVDAVH KGGIFFCQIWH GRVS GFQPNG+APISC+
Sbjct: 70 TAQGYQDTPGIWTKEHVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNSGFQPNGKAPISCS 129
Query: 133 SKGVTP-----GLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYL 187
K + P G+ ++PPR L EEIP IVNDFRLA RNA++AGFDGVEIHGANGYL
Sbjct: 130 DKPLMPQIRSNGIDEALFTPPRRLGIEEIPGIVNDFRLAARNAMEAGFDGVEIHGANGYL 189
Query: 188 IDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSN 247
IDQFMKD VNDRTD+YGGSL+NRC+F LEIV+AV EIG +RVGIRLSP A+YME+ D+N
Sbjct: 190 IDQFMKDTVNDRTDEYGGSLQNRCKFPLEIVDAVAKEIGPDRVGIRLSPFADYMESGDTN 249
Query: 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNR 307
P ALGLYMA++LNKY ILY H++E R+ ++ A P++L+PMRKAF GTFI++GG+ R
Sbjct: 250 PGALGLYMAESLNKYGILYCHVIEARM-KTMGEVHACPHTLMPMRKAFKGTFISAGGFTR 308
Query: 308 DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFL 367
+DGN+AV++ TDLVAYGR FLANPDLPKRF+++A LNKYDR TFYT DPVVGYTDYPFL
Sbjct: 309 EDGNEAVSKGRTDLVAYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFL 368
Query: 368 EVQA 371
E A
Sbjct: 369 ESTA 372
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 541 bits (1394), Expect = e-154, Method: Compositional matrix adjust.
Identities = 254/362 (70%), Positives = 303/362 (83%), Gaps = 6/362 (1%)
Query: 13 IPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVND 72
IPL++P KMG F L HR+VLAPLTR RSY IPQPHAIL+YSQR+TNGG LI EAT +++
Sbjct: 14 IPLMSPCKMGKFELCHRVVLAPLTRQRSYGYIPQPHAILHYSQRSTNGGLLIGEATVISE 73
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
T GY++ PGIWT+EQVEAWKPIVDAVH KGGIFFCQIWH GRVS FQPNGE PISCT
Sbjct: 74 TGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPISCT 133
Query: 133 SKGVTP-----GLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYL 187
+G+TP G+ ++ PR L T+EIPQIVN+FR+A RNAI+AGFDGVEIHGA+GYL
Sbjct: 134 DRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYL 193
Query: 188 IDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSN 247
IDQFMKDQVNDR+D+YGGSLENRCRFALEIVEAV NEIG++RVGIR+SP A+Y EA D+N
Sbjct: 194 IDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN 253
Query: 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNR 307
P ALGLYM ++LNKY + Y H++EPR+ A +K++ SL+PMRKA+ GTFI +GGY+R
Sbjct: 254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTE-SLVPMRKAYKGTFIVAGGYDR 312
Query: 308 DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFL 367
+DGN+A+ E+ DLVAYGR F++NPDLPKRFELNA LNKY+R TFYT DP+VGYTDYPFL
Sbjct: 313 EDGNRALIEDRADLVAYGRLFISNPDLPKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFL 372
Query: 368 EV 369
E
Sbjct: 373 ET 374
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/376 (54%), Positives = 262/376 (69%), Gaps = 22/376 (5%)
Query: 14 PLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
PL +PYKMG FNLSHR+VLAP+TR R+ NNIPQ YY QR T GGFLI E T ++ T
Sbjct: 17 PLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPT 76
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GY + PGI+T+EQV WK IVD VH KG + FCQ+WH GR S +QP G APIS T
Sbjct: 77 SAGYPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTE 136
Query: 134 KGVT-------PGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
K ++ P G + PR + T EI Q+V D+R + NAI+AGFDG+EIHGA+GY
Sbjct: 137 KPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGY 196
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246
LIDQF+KD +NDRTD+YGGSL NRC+F ++V+AVV+ IGA+RVG+R+SP +Y++A DS
Sbjct: 197 LIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDYLDAMDS 256
Query: 247 NPEALGLYMAKALNKYQ------ILYLHILEPRLFNAQDKLDAPPYS--------LLPMR 292
NP +LGL + + LNK Q + YLH+ +PR + A + +A + +R
Sbjct: 257 NPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR-YVAYGQTEAGRLGSEEEEARLMRTLR 315
Query: 293 KAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTF 352
A+ GTFI SGGY R+ G +AVA+ DLV+YGR F++NPDL R +LNA LNKY+R TF
Sbjct: 316 NAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTF 375
Query: 353 YTPDPVVGYTDYPFLE 368
YT DPVVGYTDYPFL+
Sbjct: 376 YTQDPVVGYTDYPFLQ 391
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 406 bits (1044), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/376 (53%), Positives = 262/376 (69%), Gaps = 22/376 (5%)
Query: 14 PLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
PL +PYKMG FNLSHR+VLAP+TR R+ NNIPQ YY QR T GGFLI E T ++ T
Sbjct: 17 PLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPT 76
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ G+ + PGI+T+EQV WK IVD VH KG + FCQ+WH GR S +QP G APIS T
Sbjct: 77 SAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTE 136
Query: 134 KGVT-------PGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
K ++ P G + PR + T EI Q+V D+R + NAI+AGFDG+EIHGA+GY
Sbjct: 137 KPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGY 196
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246
LIDQF+KD +NDRTD+YGGSL NRC+F ++V+AVV+ IGA+RVG+R+SP ++++A DS
Sbjct: 197 LIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDS 256
Query: 247 NPEALGLYMAKALNKYQ------ILYLHILEPRLFNAQDKLDAPPYS--------LLPMR 292
NP +LGL + + LNK Q + YLH+ +PR + A + +A + +R
Sbjct: 257 NPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR-YVAYGQTEAGRLGSEEEEARLMRTLR 315
Query: 293 KAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTF 352
A+ GTFI SGGY R+ G +AVA+ DLV+YGR F++NPDL R +LNA LNKY+R TF
Sbjct: 316 NAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTF 375
Query: 353 YTPDPVVGYTDYPFLE 368
YT DPVVGYTDYPFL+
Sbjct: 376 YTQDPVVGYTDYPFLQ 391
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/376 (53%), Positives = 262/376 (69%), Gaps = 22/376 (5%)
Query: 14 PLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
PL +PYKMG FNLSHR+VLAP+TR R+ NNIPQ YY QR T GGFLI E T ++ T
Sbjct: 17 PLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAGGFLITEGTMISPT 76
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ G+ + PGI+T+EQV WK IVD VH KG + FCQ+WH GR S +QP G APIS T
Sbjct: 77 SAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTE 136
Query: 134 KGVT-------PGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
K ++ P G + PR + T EI Q+V D+R + NAI+AGFDG+EIHGA+GY
Sbjct: 137 KPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGY 196
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246
LIDQF+KD +NDRTD+YGGSL NRC+F ++V+AVV+ IGA+RVG+R+SP ++++A DS
Sbjct: 197 LIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDS 256
Query: 247 NPEALGLYMAKALNKYQ------ILYLHILEPRLFNAQDKLDAPPYS--------LLPMR 292
NP +LGL + + LNK Q + YLH+ +PR + A + +A + +R
Sbjct: 257 NPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR-YVAYGQTEAGRLGSEEEEARLMRTLR 315
Query: 293 KAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTF 352
A+ GTFI SGGY R+ G +AVA+ DLV+YGR F++NPDL R +LNA LNK++R TF
Sbjct: 316 NAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKFNRKTF 375
Query: 353 YTPDPVVGYTDYPFLE 368
YT DPVVGYTDYPFL+
Sbjct: 376 YTQDPVVGYTDYPFLQ 391
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/374 (51%), Positives = 261/374 (69%), Gaps = 21/374 (5%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTA 74
L + YKMG F+LSHR+VLAP+TR R+ N +P YY+QRTT GGFLI+E T V+ +
Sbjct: 12 LFSSYKMGRFDLSHRVVLAPMTRCRALNGVPNAALAEYYAQRTTPGGFLISEGTMVSPGS 71
Query: 75 QGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSK 134
G+ + PGI+++EQVEAWK +V+AVH KGG FCQ+WH GR S +QPNG +PIS T+K
Sbjct: 72 AGFPHVPGIYSDEQVEAWKQVVEAVHAKGGFIFCQLWHVGRASHAVYQPNGGSPISSTNK 131
Query: 135 GVT--------PGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
++ P + PR L EIP++V D+ L+ NAI+AGFDG+EIHGA+GY
Sbjct: 132 PISENRWRVLLPDGSHVKYPKPRALEASEIPRVVEDYCLSALNAIRAGFDGIEIHGAHGY 191
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246
LIDQF+KD +NDRTDQYGGS+ NRCRF ++VE VV+ IGA +VG+R+SP ++++A DS
Sbjct: 192 LIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDS 251
Query: 247 NPEALGLYMAKALNKYQ------ILYLHILEPRLF------NAQDKLDAPPYSLL-PMRK 293
+P +LGL + LNK Q + YLH+ +PR + + D L+ +R
Sbjct: 252 DPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFY 353
A++GTF++SGG+N++ G +AV + DLV+YGR F+ANPDL RF+++ LNKY+R TFY
Sbjct: 312 AYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFY 371
Query: 354 TPDPVVGYTDYPFL 367
T DPVVGYTDYPFL
Sbjct: 372 TQDPVVGYTDYPFL 385
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/364 (44%), Positives = 217/364 (59%), Gaps = 14/364 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTA 74
L TP ++G +L +R+++APLTR+R+ +++P +YY QR + G +I+EAT ++ TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTA 69
Query: 75 QGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPIS---- 130
+GY TPGIWT+ Q WK +V+AVH KGG Q+WH GRVS QP+G+ P++
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSAL 129
Query: 131 ------CTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
C + G S PR L T+EIP IV D+R A + A +AGFD VE+H AN
Sbjct: 130 KAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAAN 189
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244
L +QF+ N RTDQYGGS+ENR RF LE+V+AV G ERVGIRL+P
Sbjct: 190 ACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLT 249
Query: 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGG 304
D PEA+ Y+A L++ + YLH EP + P MR+ F G I G
Sbjct: 250 DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG--DITYPEGFREQMRQRFKGGLIYCGN 307
Query: 305 YNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDY 364
Y+ + +N D VA+GR F+ANPDLP+RF L AALN+ D STFY VGYTDY
Sbjct: 308 YDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYG-GAEVGYTDY 366
Query: 365 PFLE 368
PFL+
Sbjct: 367 PFLD 370
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 297 bits (761), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 162/364 (44%), Positives = 216/364 (59%), Gaps = 14/364 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTA 74
L TP ++G +L +R+++APLTR+R+ +++P +YY QR + G +I+EAT ++ TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTA 69
Query: 75 QGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPIS---- 130
+GY TPGIWT+ Q WK +V+AVH KGG Q+WH GRVS QP+G+ P++
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSAL 129
Query: 131 ------CTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
C + G S PR L T+EIP IV D+R A + A +AGFD VE+H A
Sbjct: 130 KAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAAA 189
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244
L +QF+ N RTDQYGGS+ENR RF LE+V+AV G ERVGIRL+P
Sbjct: 190 ACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLT 249
Query: 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGG 304
D PEA+ Y+A L++ + YLH EP + P MR+ F G I G
Sbjct: 250 DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG--DITYPEGFREQMRQRFKGGLIYCGN 307
Query: 305 YNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDY 364
Y+ + +N D VA+GR F+ANPDLP+RF L AALN+ D STFY VGYTDY
Sbjct: 308 YDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYG-GAEVGYTDY 366
Query: 365 PFLE 368
PFL+
Sbjct: 367 PFLD 370
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 297 bits (760), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/364 (44%), Positives = 216/364 (59%), Gaps = 14/364 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTA 74
L TP ++G +L +R+++APLTR+R+ +++P +YY QR + G +I+EAT ++ TA
Sbjct: 11 LFTPLQLGSLSLPNRVIMAPLTRSRTPDSVPGRLQQIYYGQRAS-AGLIISEATNISPTA 69
Query: 75 QGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPIS---- 130
+GY TPGIWT+ Q WK +V+AVH KGG Q+WH GRVS QP+G+ P++
Sbjct: 70 RGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDGQQPVAPSAL 129
Query: 131 ------CTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
C + G S PR L T+ IP IV D+R A + A +AGFD VE+H AN
Sbjct: 130 KAEGAECFVEFEDGTAGLHPTSTPRALETDGIPGIVEDYRQAAQRAKRAGFDMVEVHAAN 189
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244
L +QF+ N RTDQYGGS+ENR RF LE+V+AV G ERVGIRL+P
Sbjct: 190 ACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLT 249
Query: 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGG 304
D PEA+ Y+A L++ + YLH EP + P MR+ F G I G
Sbjct: 250 DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG--DITYPEGFREQMRQRFKGGLIYCGN 307
Query: 305 YNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDY 364
Y+ + +N D VA+GR F+ANPDLP+RF L AALN+ D STFY VGYTDY
Sbjct: 308 YDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPSTFYG-GAEVGYTDY 366
Query: 365 PFLE 368
PFL+
Sbjct: 367 PFLD 370
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 273 bits (699), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 216/365 (59%), Gaps = 23/365 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAIL--YYSQRTTNGGFLIAEATGVND 72
L P +G L++RI++APLTR R+ + P+A++ YY++R + G +I+EAT V
Sbjct: 12 LFDPLTIGDLTLANRIIMAPLTRARA-GDTRTPNALMARYYAERAS-AGLIISEATSVTP 69
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
GY +TPGIW+ EQV+ W+ + DAVH GG F Q+WH GRVS F +G P++ +
Sbjct: 70 QGVGYASTPGIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFL-DGALPVAPS 128
Query: 133 SKGVTPGLGGGDWSP------PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + PG P PR L +EIP +V FR NA AGFDGVE+HGANGY
Sbjct: 129 A--IAPGGHVSLVRPQRPYVTPRALELDEIPGVVAAFRRGAENARAAGFDGVEVHGANGY 186
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246
L+DQF++D N RTD YGGS+ENR R LE+V+A ++ A RVG+ L+P + DS
Sbjct: 187 LLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDS 246
Query: 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYN 306
+P A ++A+ L + +I +L E +A + ++ AF G FI + +
Sbjct: 247 DPAATFGHVARELGRRRIAFLFARESFGGDAIGQ---------QLKAAFGGPFIVNENFT 297
Query: 307 RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPF 366
D A+ D VA+G+ F+ANPDLP+RF+LNA LN+ + +TFY VGYTDYP
Sbjct: 298 LDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAATFYAQGE-VGYTDYPA 356
Query: 367 LEVQA 371
LE A
Sbjct: 357 LESAA 361
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 268 bits (686), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 155/368 (42%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
NGYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 NGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL---PMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL---PMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/362 (40%), Positives = 207/362 (57%), Gaps = 18/362 (4%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNR-SYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L P + G F +RI +APLTR R + +++P YY+QR + G +I+EATG++
Sbjct: 4 LFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRAS-AGLIISEATGISQE 62
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRV---STYGFQPNGEAPIS 130
G+ PGIW++ QVEAW PI AVH+ GG+ F Q+WH GR+ + G QP
Sbjct: 63 GLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQP------V 116
Query: 131 CTSKGVTPGLGGG-DWSPP----RPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANG 185
S PGLG D P R LR +EIP++++D+ A R+A+KAGFDGV+IH ANG
Sbjct: 117 APSASQAPGLGHTYDGKKPYDVARALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANG 176
Query: 186 YLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245
YLID+F++D N R D+YGG++ENR R ++ E V+ IG ER +RLSP+ D
Sbjct: 177 YLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVD 236
Query: 246 SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY 305
S+PE + + AK L+ I +L + E + K D P S +RK F + + Y
Sbjct: 237 SHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLS-PEIRKVFKPPLVLNQDY 295
Query: 306 NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYP 365
+ A+ D +++GR F+ NPDLP+RF A L K T+YT P GYTDYP
Sbjct: 296 TFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTP-KGYTDYP 354
Query: 366 FL 367
L
Sbjct: 355 LL 356
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 243
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 244 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 297
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 298 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 356
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 357 GYTDYPSL 364
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APL+R RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLSRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +F+
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFFG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL---PMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN R ++
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNP-QRPESFSGGGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 123
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+G+L+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 184 HGFLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 243
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 244 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 297
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 298 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 356
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 357 GYTDYPSL 364
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 209/362 (57%), Gaps = 17/362 (4%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L P K+G L +RI++APLTR R+ +P YY QR + G +++EAT V+
Sbjct: 4 LFDPIKLGDLQLPNRIIMAPLTRCRADEGRVPNALMAEYYVQRAS-AGLILSEATSVSPM 62
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
GY +TPGIW +EQV W + AVH GG F Q+WH GR+S + NGE P++ ++
Sbjct: 63 GVGYPDTPGIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYL-NGELPVAPSA 121
Query: 134 ---KG-VTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLID 189
KG V+ D+ PR L TEEI IV +R NA AGFDGVEIHGANGYL+D
Sbjct: 122 IQPKGHVSLVRPLSDYPTPRALETEEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLD 181
Query: 190 QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPE 249
QF++ N RTD+YGGSLENR R LE+ +A + GA+RVG+ L+P A+ + D++
Sbjct: 182 QFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRA 241
Query: 250 ALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDD 309
Y+A+ L K I ++ E ++ L +++AF G +I + +++
Sbjct: 242 ETFTYVARELGKRGIAFICSREREADDSIGPL---------IKEAFGGPYIVNERFDKAS 292
Query: 310 GNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFLEV 369
N A+A D VA+G F+ANPDLP R +A LN+ TFY P VGY DYP L++
Sbjct: 293 ANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHPETFYGKGP-VGYIDYPRLKL 351
Query: 370 QA 371
A
Sbjct: 352 AA 353
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 216/363 (59%), Gaps = 18/363 (4%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L P +G L +RIV+ P+TR+R+ ++ +YY+QR + G +++E T ++
Sbjct: 5 LFQPITLGALTLKNRIVMPPMTRSRASQPGDVANHMMAIYYAQRAS-AGLIVSEGTQISP 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
TA+GY TPGI+T EQ+ W+ + +AVH KG F Q+WH GRV T+ +G+ PIS +
Sbjct: 64 TAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRV-THPDNIDGQQPISSS 122
Query: 133 S---KGVTPGLGGG-------DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHG 182
+ + V + G D + PR + +I Q++ D+R A NA++AGFDG+E+H
Sbjct: 123 TLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFDGIELHA 182
Query: 183 ANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242
ANGYLI+QF+ + N+R+D+YGGSLENR RF E+V A+V+ IGAERVG+RL+P
Sbjct: 183 ANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNG 242
Query: 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS 302
D++P A LNK++I+YLHI E + D D P +R+A+ G I +
Sbjct: 243 TVDADPILTYTAAAALLNKHRIVYLHIAE---VDWDDAPDTPVSFKRALREAYQGVLIYA 299
Query: 303 GGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYT 362
G YN + +A+ + D++ +GR F+ANPDLP+R L ++ +T + G T
Sbjct: 300 GRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPATLFGGGE-KGLT 358
Query: 363 DYP 365
DYP
Sbjct: 359 DYP 361
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 203/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN R +
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNP-QRPESFAGGGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 263 bits (673), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 6 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 64
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q+WH GR+S QP G+AP+S
Sbjct: 65 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGGQAPVSAS 124
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE++ A
Sbjct: 125 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELNSA 184
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 185 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 244
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 245 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 298
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 299 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 357
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 358 GYTDYPSL 365
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q++H GR+S QP G+AP+S
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLYHTGRISHSSIQPGGQAPVSAS 123
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 243
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 244 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 297
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 298 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 356
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 357 GYTDYPSL 364
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/368 (41%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIPQPHAILYYSQRTTNGGFLIAEATGVND 72
L TP K+G +R+ +APLTR RS +IP P YY QR + G +I+EAT ++
Sbjct: 5 LFTPLKVGAVTAPNRVFMAPLTRLRSIEPGDIPTPLMGEYYRQRAS-AGLIISEATQISA 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC- 131
A+GY PG+ + EQ+ AWK I VH + G Q++H GR+S QP G+AP+S
Sbjct: 64 QAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLFHTGRISHSSIQPGGQAPVSAS 123
Query: 132 -----TSKGVTPGLGGG---DWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183
T + G D + PR L +EIP IVNDFR A NA +AGFD VE+H A
Sbjct: 124 ALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSA 183
Query: 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243
+GYL+ QF+ N RTDQYGGS+ENR R LE+V+AV NE A+R+GIR+SP +
Sbjct: 184 HGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV 243
Query: 244 QDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYS---LLPMRKAFDGTF 299
+ N EA LY+ + L K I YLH+ E L + PYS +R+ F G
Sbjct: 244 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGK------PYSEAFRQKVRERFHGVI 297
Query: 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVV 359
I +G Y + + + D VA+GR ++ANPDL R + A LN +FY
Sbjct: 298 IGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPESFYG-GGAE 356
Query: 360 GYTDYPFL 367
GYTDYP L
Sbjct: 357 GYTDYPSL 364
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 203/381 (53%), Gaps = 42/381 (11%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSY--NNIPQPHAILYYSQRTTNGGFLIAEATGVND 72
LL P K+G + L +RI++APLTR ++ +++P+ ++L Y + + G +IAEAT V
Sbjct: 7 LLRPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQP 66
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
G+ PGI+++ Q+E W+ IVDAVH+KGG+ F Q+ H GR E + +
Sbjct: 67 NYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGRAGI------PEKILQQS 120
Query: 133 SKGVTPGLGGGDWSPPRPLRTEEIP----------------QIVND---------FRLAG 167
P G + P++ IP ++ +D F
Sbjct: 121 KSDQDPLAGRLLAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDGIIPLFVEGA 180
Query: 168 RNAI-KAGFDGVEIHGANGYLIDQFMKDQVNDRTD--QYGGSLENRCRFALEIVEAVVNE 224
+NAI KAGFDGVEIHGANGYL+D F ++ N R G +++ RC+ ++ ++V +
Sbjct: 181 KNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDA 240
Query: 225 IGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAP 284
+G++RVG+R+SP DSNPEAL ++ K + + YLH L + N Q D
Sbjct: 241 VGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIG-DVV 299
Query: 285 PYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAAL 344
+ +R ++ G I++ Y+ ++ ++ + E D VA+G F+ANPDL +R + N L
Sbjct: 300 AW----VRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPL 355
Query: 345 NKYDRSTFYTPDPVVGYTDYP 365
N+ T+YT VGY DYP
Sbjct: 356 NEPRPETYYT-RTAVGYNDYP 375
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 211 bits (536), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 201/378 (53%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+W G ++ G + +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 136
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 137 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 316 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 373
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 374 TFYQMS-AHGYIDYPTYE 390
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + +W G ++ G + +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVNLWVLGWAAFPDNLARDGLRYD 135
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 136 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 194
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 315 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 372
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 373 TFYQMS-AHGYIDYPTYE 389
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 201/378 (53%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+W G ++ G + +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEI+ AN
Sbjct: 136 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAN 194
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 315 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 372
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 373 TFYQMS-AHGYIDYPTYE 389
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/378 (36%), Positives = 201/378 (53%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+W G ++ G + +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLWVLGWAAFPDNLARDGLRYD 135
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEI+ A+
Sbjct: 136 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAH 194
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 315 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 372
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 373 TFYQMS-AHGYIDYPTYE 389
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+ G ++ G + +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLLVLGWAAFPDNLARDGLRYD 136
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 137 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 316 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 373
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 374 TFYQMS-AHGYIDYPTYE 390
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+ G ++ G + +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLQVLGWAAFPDNLARDGLRYD 136
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 137 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 316 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 373
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 374 TFYQMS-AHGYIDYPTYE 390
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 16 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 75
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+ G ++ G + +
Sbjct: 76 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 135
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 136 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 194
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 195 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 254
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 255 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 314
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 315 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 372
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 373 TFYQMS-AHGYIDYPTYE 389
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+ G ++ G + +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLIVLGWAAFPDNLARDGLRYD 136
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 137 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 316 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 373
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 374 TFYQMS-AHGYIDYPTYE 390
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 200/378 (52%), Gaps = 28/378 (7%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYN--NIP-QPHAILYYSQRTTN-GGFLIAEATGV 70
L P K+G L HR V+ PLTR R+ + NIP + A+ YY+QR G +I E +
Sbjct: 17 LFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFI 76
Query: 71 NDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCG------RVSTYGFQPN 124
+ A GY N PG+W+EEQ+ W I +A+HEK + Q+ G ++ G + +
Sbjct: 77 SPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYD 136
Query: 125 GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGAN 184
A + +P L +EI Q + ++ A +N+I AG DGVEIH AN
Sbjct: 137 S-ASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSAN 195
Query: 185 GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA--NYME 242
GYL++QF+ N RTD+YGGS+ENR RF LE+V+A+V IG E+VG+RLSP+ N M
Sbjct: 196 GYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMS 255
Query: 243 -AQDSNPEALGLYMAKALNK-----YQILYLHILEPRLFN---AQDKLDAPPYSLLPMRK 293
++ A Y+A L K ++ ++H++EPR+ N + + + S +
Sbjct: 256 GGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYS 315
Query: 294 AFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDRS 350
+ G I +G + + V E D L+ YGR F++NPDL R E LNKYDR
Sbjct: 316 IWKGPVIRAGNFALHP--EVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRD 373
Query: 351 TFYTPDPVVGYTDYPFLE 368
TFY GY DYP E
Sbjct: 374 TFYQMS-AHGYIDYPTYE 390
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 38/365 (10%)
Query: 20 KMGPFNLSHRIVLAPLTRNRSY-NNIPQPHAILYYSQRTTN-GGFLIAEATGVNDTAQGY 77
K+G L +IV P TR R+ ++ P + YY R+T G LI EAT V+ A GY
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 78 QNT-PGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVS------TYGFQPNGEAPI- 129
+ PGIWT++ +AWK I D VH G Q+ GRV+ T G P +
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 130 -SCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND-FRLAGRNAIKAGFDGVEIHGANGYL 187
S +K +G +P R L T+E+ +V + + A + A+ AGFD +E+H A+GYL
Sbjct: 139 ESDAAKEAAEAVG----NPVRALTTQEVKDLVYETYTNAAQKAMDAGFDYIELHAAHGYL 194
Query: 188 IDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY--MEAQD 245
+DQF++ N RTD+YGGS+ENR R LE+++ + +GA+++GIR+SP A + M+A
Sbjct: 195 LDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHK 254
Query: 246 SNPEALGLY------MAKALNKYQ-ILYLHILEPRL-----FNAQDKLDAPPYSLLPMRK 293
L + + + +K Q I Y+ ++EPR+ + +D+ + + K
Sbjct: 255 DTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEF----VSK 310
Query: 294 AFDGTFIASGGYNRDDGN-KAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDR 349
+ G + +G Y+ D K + E+ D LV + R F +NP+L + L YDR
Sbjct: 311 IWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDR 370
Query: 350 STFYT 354
+TFY+
Sbjct: 371 NTFYS 375
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 38/365 (10%)
Query: 20 KMGPFNLSHRIVLAPLTRNRSY-NNIPQPHAILYYSQRTTN-GGFLIAEATGVNDTAQGY 77
K+G L +IV P TR R+ ++ P + YY R+T G LI EAT V+ A GY
Sbjct: 19 KVGNNTLQTKIVYPPTTRFRALEDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGY 78
Query: 78 QNT-PGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVS------TYGFQPNGEAPI- 129
+ PGIWT++ +AWK I D VH G Q+ GRV+ T G P +
Sbjct: 79 EGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATY 138
Query: 130 -SCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND-FRLAGRNAIKAGFDGVEIHGANGYL 187
S +K +G +P R L T+E+ +V + + A + A+ AGFD +E+H A+GYL
Sbjct: 139 ESDAAKEAAEAVG----NPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYL 194
Query: 188 IDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY--MEAQD 245
+DQF++ N RTD+YGGS+ENR R LE+++ + +GA+++GIR+SP A + M+A
Sbjct: 195 LDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHK 254
Query: 246 SNPEALGLY------MAKALNKYQ-ILYLHILEPRL-----FNAQDKLDAPPYSLLPMRK 293
L + + + +K Q I Y+ ++EPR+ + +D+ + + K
Sbjct: 255 DTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEF----VSK 310
Query: 294 AFDGTFIASGGYNRDDGN-KAVAENYTD---LVAYGRSFLANPDLPKRFELNAALNKYDR 349
+ G + +G Y+ D K + E+ D LV + R F +NP+L + L YDR
Sbjct: 311 IWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDR 370
Query: 350 STFYT 354
+TFY+
Sbjct: 371 NTFYS 375
>pdb|3KRU|A Chain A, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|B Chain B, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|C Chain C, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
pdb|3KRU|D Chain D, Crystal Structure Of The Thermostable Old Yellow Enzyme
From Thermoanaerobacter Pseudethanolicus E39
Length = 343
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 159/343 (46%), Gaps = 32/343 (9%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTR-NRSYNNIPQPHAILYYSQRTTNG-GFLIAEATGVND 72
L P K+ + +RI+++P+ + S + +P I++Y+ R G G ++ EAT V
Sbjct: 4 LHMPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVES 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
+ + GIW +EQV+ K IVD G + Q+ H GR ++
Sbjct: 64 RGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYED--------- 114
Query: 133 SKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFM 192
G +P G + PR L EEI IV F A + A AG+D VEIH A+GYLI +F+
Sbjct: 115 VVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFL 174
Query: 193 KDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSPHANYMEAQDSNPEAL 251
N R D+YG S+ENR RF +E+++ V + + +R+S +YME N + +
Sbjct: 175 SPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSAD-DYMEG-GINIDMM 232
Query: 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL---PMRKAFDGTFIASGGYNRD 308
Y+ +K + + + L N L P Y + ++K + A G
Sbjct: 233 VEYINMIKDKVDL--IDVSSGGLLNVDINL-YPGYQVKYAETIKKRCNIKTSAVGLITTQ 289
Query: 309 DGNKAVAEN-YTDLVAYGRSFLANP-----------DLPKRFE 339
+ + + N DLVA GR L NP D PK++E
Sbjct: 290 ELAEEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3KRZ|A Chain A, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|B Chain B, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|C Chain C, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
pdb|3KRZ|D Chain D, Crystal Structure Of The Thermostable Nadh4-Bound Old
Yellow Enzyme From Thermoanaerobacter Pseudethanolicus
E39
Length = 337
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 159/343 (46%), Gaps = 32/343 (9%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTR-NRSYNNIPQPHAILYYSQRTTNG-GFLIAEATGVND 72
L P K+ + +RI+++P+ + S + +P I++Y+ R G G ++ EAT V
Sbjct: 4 LHMPLKIKDITIKNRIMMSPMCMYSASTDGMPNDWHIVHYATRAIGGVGLIMQEATAVES 63
Query: 73 TAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT 132
+ + GIW +EQV+ K IVD G + Q+ H GR ++
Sbjct: 64 RGRITDHDLGIWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYED--------- 114
Query: 133 SKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFM 192
G +P G + PR L EEI IV F A + A AG+D VEIH A+GYLI +F+
Sbjct: 115 VVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFL 174
Query: 193 KDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSPHANYMEAQDSNPEAL 251
N R D+YG S+ENR RF +E+++ V + + +R+S +YME N + +
Sbjct: 175 SPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSAD-DYMEG-GINIDMM 232
Query: 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL---PMRKAFDGTFIASGGYNRD 308
Y+ +K + + + L N L P Y + ++K + A G
Sbjct: 233 VEYINMIKDKVDL--IDVSSGGLLNVDINL-YPGYQVKYAETIKKRCNIKTSAVGLITTQ 289
Query: 309 DGNKAVAEN-YTDLVAYGRSFLANP-----------DLPKRFE 339
+ + + N DLVA GR L NP D PK++E
Sbjct: 290 ELAEEILSNERADLVALGRELLRNPYWVLHTYTSKEDWPKQYE 332
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/333 (28%), Positives = 152/333 (45%), Gaps = 32/333 (9%)
Query: 15 LLTPYKMGPFNLSHRIVLAPL---TRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVN 71
L +PY + L +RIV++P+ + + + H I Y ++ G +I EATGV
Sbjct: 5 LFSPYTIRGLTLKNRIVMSPMCMYSCDTKDGAVRTWHKIHYPARAVGQVGLIIVEATGVT 64
Query: 72 DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC 131
+ + GIW+++ + + +V V E G Q+ H GR S + P
Sbjct: 65 PQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKS--------QVPGEI 116
Query: 132 TSKGVTPGLGGGDWSP-PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQ 190
+ P D SP P+ + +I + V F+ R A +AGFD +EIH A+GYLI++
Sbjct: 117 IAPSAVPF---DDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINE 173
Query: 191 FMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSP---HANYMEAQDSN 247
F+ N R D+YGGS ENR RF E+++A V E+ + +R+S H + + A+D
Sbjct: 174 FLSPLSNRRQDEYGGSPENRYRFLGEVIDA-VREVWDGPLFVRISASDYHPDGLTAKDYV 232
Query: 248 PEALGLYMAKALNKYQILYLHI----LEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASG 303
P AK + + + + + + P N P L+ R+ D A G
Sbjct: 233 P------YAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELI--RREADIPTGAVG 284
Query: 304 GYNRDDGNKAVAEN-YTDLVAYGRSFLANPDLP 335
+ + +N DLV GR L NP P
Sbjct: 285 LITSGWQAEEILQNGRADLVFLGRELLRNPYWP 317
>pdb|1Z41|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z41|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
pdb|1Z42|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z42|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Hydroxybenzaldehyde
pdb|1Z44|A Chain A, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z44|B Chain B, Crystal Structure Of Oxidized Yqjm From Bacillus Subtilis
Complexed With P-Nitrophenol
pdb|1Z48|A Chain A, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
pdb|1Z48|B Chain B, Crystal Structure Of Reduced Yqjm From Bacillus Subtilis
Length = 338
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 13/210 (6%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN---IPQPHAILYYSQRTTNGGFLIAEATGVN 71
L TP + L +RIV +P S+ + H Y S+ G +I EA+ VN
Sbjct: 5 LFTPITIKDXTLKNRIVXSPXCXYSSHEKDGKLTPFHXAHYISRAIGQVGLIIVEASAVN 64
Query: 72 DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC 131
+ GIW++E +E + + + V E+G Q+ H GR + + I+
Sbjct: 65 PQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAF 124
Query: 132 TSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQF 191
+ TP E++ + V +F+ A A +AGFD +EIH A+GYLI +F
Sbjct: 125 DEQSATP----------VEXSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEF 174
Query: 192 MKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
+ N RTD+YGGS ENR RF EI++ V
Sbjct: 175 LSPLSNHRTDEYGGSPENRYRFLREIIDEV 204
>pdb|3L67|A Chain A, Xenobiotic Reductase A - C25s Variant
pdb|3L68|A Chain A, Xenobiotic Reductase A - C25s Variant With Coumarin
Length = 363
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 104/215 (48%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+++ + + I H + G L+ EAT V
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMSQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 13/223 (5%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVND-T 73
L P +G L +R+++ + +Y++R +G LI D T
Sbjct: 5 LFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLT 64
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
G + + Q+ + I +AVH++GG QI H GR Y +QP+ AP + +
Sbjct: 65 GVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGR---YSYQPHLVAPSALQA 121
Query: 134 KGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMK 193
+ P L EEI Q++++F + A +AG+DGVE+ G+ GYLI++F+
Sbjct: 122 PI--------NRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLT 173
Query: 194 DQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGI-RLS 235
+ N R+DQ+GG NR RFA+E+V AV +G + + I RLS
Sbjct: 174 LRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLS 216
>pdb|3L65|A Chain A, Xenobiotic Reductase A - C25a Mutant
pdb|3L66|A Chain A, Xenobiotic Reductase A - C25a Variant With Coumarin
Length = 363
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMAQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3N14|A Chain A, Xena - W358a
Length = 363
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|3L5L|A Chain A, Xenobiotic Reductase A - Oxidized
pdb|3L5M|A Chain A, Xenobiotic Reductase A - Coumarin Bound
pdb|3N19|B Chain B, Xena - Reduced
pdb|3N19|D Chain D, Xena - Reduced
Length = 363
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 183
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|2H8Z|A Chain A, Xenobiotic Reductase A In Complex With 8-Hydroxycoumarin
pdb|2H90|A Chain A, Xenobiotic Reductase A In Complex With Coumarin
Length = 359
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 3 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 62
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 63 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 122
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 123 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 182
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 183 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 217
>pdb|2H8X|A Chain A, Xenobiotic Reductase A-Oxidized
Length = 358
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 2 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 61
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 62 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 121
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+GY
Sbjct: 122 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGY 181
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 182 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 216
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 4/210 (1%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSY--NNIPQPHAILYYSQRTTNG-GFLIAEATGVN 71
L TP ++G L +R+ ++P+ + + + H +L+Y R G G ++ EAT V
Sbjct: 4 LFTPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWH-LLHYPTRALGGVGLILVEATAVE 62
Query: 72 DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC 131
+ GIW+E+ + K + + E G + Q+ H GR + G P+
Sbjct: 63 PLGRISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGW 122
Query: 132 TSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQF 191
G +P + P PL + +I+ F R A++AGF +E+H A+GYL+ F
Sbjct: 123 RVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSF 182
Query: 192 MKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
+ N RTD YGGSLENR RF L++ +AV
Sbjct: 183 LSPLSNQRTDAYGGSLENRMRFPLQVAQAV 212
>pdb|3N16|A Chain A, Xena - Y183f
Length = 363
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 8/215 (3%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNN-IPQPHAILYYSQRTTNGGFLIAEATGVNDT 73
L PY + L +RI + P+ + + + I H + G L+ EAT V
Sbjct: 4 LFEPYTLKDVTLRNRIAIPPMCQYMAEDGMINDWHHVHLAGLARGGAGLLVVEATAVAPE 63
Query: 74 AQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTS 133
+ GIW++ +A+ P+V A+ G + QI H GR ++ G+ I+
Sbjct: 64 GRITPGCAGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADD 123
Query: 134 ----KGVTP-GLGGGDWSP--PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
+ + P + G P PR + ++I ++ DF A R A AGF+ +E+H A+G+
Sbjct: 124 TRGWETIAPSAIAFGAHLPKVPREMTLDDIARVKQDFVDAARRARDAGFEWIELHFAHGF 183
Query: 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAV 221
L F + N RTD YGGS +NR RF LE + AV
Sbjct: 184 LGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAV 218
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 154/354 (43%), Gaps = 56/354 (15%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQR----------TTNGGF-- 62
L P ++GP L RNR Y PHAI S + GG+
Sbjct: 9 LFEPIQIGPKTL----------RNRFYQ---VPHAIGAGSDKPGFQSAHRSVKAEGGWAA 55
Query: 63 LIAEATGVN-DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGF 121
L E +N ++ ++ + IW E V K + D VH+ G + ++W+ G
Sbjct: 56 LNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGG-----AH 110
Query: 122 QPNGEAPISCTSKGVTPGLGGGDW---SPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGV 178
PN E+ T +G P ++ S + + +I Q+ + A + + AGFD V
Sbjct: 111 APNMES--RATPRG--PSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIV 166
Query: 179 EIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIG-----AERVGIR 233
++GA+ YL QF+ N RTD+YGGSLENR RF LE +E V + +G A R G+
Sbjct: 167 YVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVD 226
Query: 234 LSPHANYMEAQDSNPEALGLYMAKAL-NKYQILYLHILE------PRLFNAQDKLDAPPY 286
+EA+ + + MA +L + + I I E P F Q P+
Sbjct: 227 TVYGPGQIEAEVDGQKF--VEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGH--TIPW 282
Query: 287 SLLPMRKAFDGTFIASGGYNRDDGN-KAVAENYTDLVAYGRSFLANPDLPKRFE 339
L +++ + G Y + + V + Y D++ R +A+P LP++ E
Sbjct: 283 VKL-VKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 36/344 (10%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGF--LIAEATGVN- 71
L P ++GP L +R P + +P + GG+ L E +N
Sbjct: 9 LFEPIQIGPKTLRNRFYQVPHCIGAGSD---KPGFQSAHRSVKAEGGWAALNTEYCSINP 65
Query: 72 DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC 131
++ ++ + IW E V K + D VH+ G + ++W+ G PN E+
Sbjct: 66 ESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGG-----AHAPNMES--RA 118
Query: 132 TSKGVTPGLGGGDW---SPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLI 188
T +G P ++ S + + +I Q+ + A + + AGFD V ++GA+ YL
Sbjct: 119 TPRG--PSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLP 176
Query: 189 DQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIG-----AERVGIRLSPHANYMEA 243
QF+ N RTD+YGGSLENR RF LE +E V + +G A R G+ +EA
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 244 QDSNPEALGLYMAKAL-NKYQILYLHILE------PRLFNAQDKLDAPPYSLLPMRKAFD 296
+ + + MA +L + + I I E P F Q P+ L +++
Sbjct: 237 EVDGQKF--VEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGH--TIPWVKL-VKQVSK 291
Query: 297 GTFIASGGYNRDDGN-KAVAENYTDLVAYGRSFLANPDLPKRFE 339
+ G Y + + V + Y D++ R +A+P LP++ E
Sbjct: 292 KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 22/231 (9%)
Query: 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIA-----EATG 69
L P ++GPF +R P Y + P A + GG+ E
Sbjct: 14 LFEPVQIGPFTTKNRFYQVPHCNGMGYRD---PSAQASMRKIKAEGGWSAVCTEQVEIHA 70
Query: 70 VNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPI 129
+D A + IW ++ + A K I DA+HE GG+ ++ H G + Q + E P+
Sbjct: 71 TSDIAPFIELR--IWDDQDLPALKRIADAIHEGGGLAGIELAHNGMNAPN--QLSRETPL 126
Query: 130 SCTSKGVTPGLGGGDWSPP---RPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186
V P D P R + ++I + R A R +I+AG+D V ++GA+GY
Sbjct: 127 GPGHLPVAP-----DTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGY 181
Query: 187 L-IDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEI-GAERVGIRLS 235
+ F+ + N RTD+YGGSLENR R E++E ++E G V R++
Sbjct: 182 SGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRIT 232
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 126/350 (36%), Gaps = 41/350 (11%)
Query: 14 PLLTPYKM-GPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTN-GGFLIAEATGVN 71
PLL + +S+R VL+P T N S A L Y+ R +N G + A +
Sbjct: 26 PLLQSIHLPNGIKISNRFVLSPXTVNASTKEGYITKADLAYAARRSNSAGXQVTGAAYIE 85
Query: 72 DTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVS---------TYGFQ 122
+ ++ I + + + G + Q+ H GR S YG
Sbjct: 86 PYGKLFEYGFNIDHDACIPGLTNXASTXKQHGSLAIIQLAHAGRFSNQAILNFGKVYGPS 145
Query: 123 PNG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIH 181
P +PI + E+I I+ +R A AIKAGFDGVEI
Sbjct: 146 PXTLHSPIEHVVIAXS---------------HEKINSIIQQYRDATLRAIKAGFDGVEIS 190
Query: 182 GANGYLIDQFMKDQVNDRTDQYGG-SLENRCRFALEIVEAVVNEIGAER-----VGIRLS 235
A LI F N RTD YG SL+NR R LE+ AV I E +G R +
Sbjct: 191 IAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVXRAVQEVIDKEAPDNFILGFRAT 250
Query: 236 PHANYMEAQDSNPEALGLYMAKALNKYQILYL-------HILEPRLFNAQDKLDAPPYSL 288
P + + + I YL HI + D P +
Sbjct: 251 PEETRGSDLGYTIDEFNQLIDWVXDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQI 310
Query: 289 LPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338
+ A IASGG N + + A + D V F+ PD +
Sbjct: 311 VYEHLAGRIPLIASGGINSPE-SALDALQHADXVGXSSPFVTEPDFVHKL 359
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 283 APPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDL 334
AP L ++ F G +A GY+R + KA+ E D V G S + PDL
Sbjct: 195 APRLGRLARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,136,097
Number of Sequences: 62578
Number of extensions: 543899
Number of successful extensions: 1595
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 78
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)