Query 017448
Match_columns 371
No_of_seqs 157 out of 1345
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 100.0 2E-89 4.4E-94 671.1 39.4 364 6-369 3-386 (391)
2 PRK10605 N-ethylmaleimide redu 100.0 7.1E-88 1.5E-92 654.5 38.5 350 13-367 1-362 (362)
3 COG1902 NemA NADH:flavin oxido 100.0 6.9E-88 1.5E-92 649.1 37.1 350 11-369 2-360 (363)
4 cd02933 OYE_like_FMN Old yello 100.0 1.4E-83 2.9E-88 619.6 37.6 333 14-349 1-338 (338)
5 PF00724 Oxidored_FMN: NADH:fl 100.0 8.5E-84 1.8E-88 623.7 23.9 327 14-345 1-341 (341)
6 cd04747 OYE_like_5_FMN Old yel 100.0 2.3E-81 5E-86 606.0 35.6 329 15-351 1-356 (361)
7 cd04734 OYE_like_3_FMN Old yel 100.0 3.2E-81 6.9E-86 605.1 35.9 325 15-349 1-341 (343)
8 PRK13523 NADPH dehydrogenase N 100.0 3.4E-81 7.3E-86 601.9 34.7 319 13-345 1-325 (337)
9 cd04733 OYE_like_2_FMN Old yel 100.0 8.4E-81 1.8E-85 602.7 34.0 320 15-341 1-338 (338)
10 cd04735 OYE_like_4_FMN Old yel 100.0 4.1E-80 8.9E-85 600.3 32.8 321 15-344 1-332 (353)
11 cd02931 ER_like_FMN Enoate red 100.0 6.5E-79 1.4E-83 596.6 35.7 331 15-350 1-362 (382)
12 cd02929 TMADH_HD_FMN Trimethyl 100.0 8.9E-79 1.9E-83 593.3 35.2 336 11-354 4-350 (370)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 1.1E-78 2.3E-83 590.9 34.0 324 15-352 1-335 (353)
14 cd02932 OYE_YqiM_FMN Old yello 100.0 2.6E-77 5.7E-82 578.1 34.7 318 15-340 1-335 (336)
15 cd02803 OYE_like_FMN_family Ol 100.0 3.6E-77 7.8E-82 576.0 33.1 316 16-341 1-327 (327)
16 PRK08255 salicylyl-CoA 5-hydro 100.0 3.2E-74 7E-79 609.4 36.9 338 9-354 393-746 (765)
17 KOG0134 NADH:flavin oxidoreduc 100.0 5.5E-57 1.2E-61 428.0 14.8 355 13-369 7-392 (400)
18 TIGR00737 nifR3_yhdG putative 100.0 6.5E-33 1.4E-37 266.5 21.2 235 21-340 1-237 (319)
19 PRK10550 tRNA-dihydrouridine s 100.0 3E-32 6.6E-37 259.6 22.2 233 29-343 2-242 (312)
20 cd02801 DUS_like_FMN Dihydrour 100.0 8E-32 1.7E-36 247.4 20.5 227 30-341 2-229 (231)
21 PRK11815 tRNA-dihydrouridine s 100.0 4.9E-30 1.1E-34 247.2 21.6 231 25-340 8-248 (333)
22 PRK10415 tRNA-dihydrouridine s 100.0 2.5E-29 5.5E-34 241.1 21.7 237 19-340 1-239 (321)
23 COG0042 tRNA-dihydrouridine sy 100.0 1.1E-28 2.3E-33 236.2 20.9 238 18-338 1-241 (323)
24 TIGR00742 yjbN tRNA dihydrouri 100.0 4.5E-28 9.7E-33 231.4 21.9 228 28-340 1-238 (318)
25 TIGR01037 pyrD_sub1_fam dihydr 100.0 5.4E-27 1.2E-31 223.7 22.8 245 18-342 2-280 (300)
26 cd04740 DHOD_1B_like Dihydroor 99.9 3.6E-26 7.8E-31 217.7 24.2 244 19-343 2-278 (296)
27 PRK07259 dihydroorotate dehydr 99.9 2.2E-25 4.8E-30 212.7 21.9 243 18-342 3-280 (301)
28 PF01207 Dus: Dihydrouridine s 99.9 2.5E-26 5.3E-31 219.4 5.3 165 161-343 66-234 (309)
29 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 8E-23 1.7E-27 194.0 23.3 243 20-341 2-289 (289)
30 KOG2335 tRNA-dihydrouridine sy 99.9 8.1E-23 1.8E-27 191.7 16.5 221 31-337 22-245 (358)
31 cd02911 arch_FMN Archeal FMN-b 99.9 3.2E-22 7E-27 183.4 18.0 225 29-339 1-232 (233)
32 cd04739 DHOD_like Dihydroorota 99.9 8.9E-20 1.9E-24 175.5 23.2 243 18-342 3-284 (325)
33 cd02940 DHPD_FMN Dihydropyrimi 99.9 1E-19 2.2E-24 173.4 22.8 248 18-341 3-298 (299)
34 PRK05286 dihydroorotate dehydr 99.8 4.4E-20 9.5E-25 179.0 19.3 248 18-341 50-335 (344)
35 cd04738 DHOD_2_like Dihydrooro 99.8 1.9E-19 4.2E-24 173.4 20.8 249 18-341 40-326 (327)
36 TIGR00736 nifR3_rel_arch TIM-b 99.8 1.4E-19 3E-24 164.6 17.1 209 51-331 8-226 (231)
37 PRK07565 dihydroorotate dehydr 99.8 5.9E-19 1.3E-23 170.7 22.0 243 18-342 4-286 (334)
38 PRK08318 dihydropyrimidine deh 99.8 1E-17 2.2E-22 167.1 22.0 248 18-342 5-300 (420)
39 cd04741 DHOD_1A_like Dihydroor 99.8 2.9E-17 6.4E-22 156.0 22.1 242 20-341 2-289 (294)
40 TIGR01036 pyrD_sub2 dihydrooro 99.7 1.7E-14 3.6E-19 139.3 23.7 156 160-341 153-334 (335)
41 PLN02495 oxidoreductase, actin 99.6 4.5E-14 9.8E-19 137.6 21.8 256 9-342 5-317 (385)
42 KOG2333 Uncharacterized conser 99.6 1.1E-14 2.3E-19 140.6 14.4 246 16-347 253-507 (614)
43 PRK02506 dihydroorotate dehydr 99.6 1.2E-13 2.6E-18 132.2 19.9 245 18-342 3-288 (310)
44 COG0167 PyrD Dihydroorotate de 99.6 3.5E-13 7.6E-18 127.1 19.1 249 19-342 4-288 (310)
45 PF01180 DHO_dh: Dihydroorotat 99.5 2.1E-13 4.6E-18 129.8 15.7 158 158-341 109-290 (295)
46 cd04722 TIM_phosphate_binding 99.5 1.9E-12 4.1E-17 114.5 20.6 186 47-326 12-200 (200)
47 PLN02826 dihydroorotate dehydr 99.5 6.5E-12 1.4E-16 123.7 21.0 160 157-342 200-388 (409)
48 cd02809 alpha_hydroxyacid_oxid 99.4 4.7E-11 1E-15 113.9 20.3 130 163-332 131-263 (299)
49 cd03316 MR_like Mandelate race 99.4 1.1E-11 2.3E-16 121.3 14.5 128 160-324 140-269 (357)
50 TIGR02151 IPP_isom_2 isopenten 99.3 2.5E-10 5.4E-15 110.4 18.6 141 173-341 140-304 (333)
51 PRK05437 isopentenyl pyrophosp 99.0 4.7E-08 1E-12 95.2 22.3 133 171-331 145-296 (352)
52 TIGR01304 IMP_DH_rel_2 IMP deh 99.0 7.1E-09 1.5E-13 100.9 14.6 117 164-328 102-219 (369)
53 cd04730 NPD_like 2-Nitropropan 98.8 3.2E-07 6.9E-12 84.4 18.5 123 164-334 70-194 (236)
54 cd03319 L-Ala-DL-Glu_epimerase 98.8 8.9E-08 1.9E-12 92.1 15.0 121 161-325 136-258 (316)
55 cd00381 IMPDH IMPDH: The catal 98.8 4.4E-07 9.5E-12 87.5 19.1 133 163-335 95-236 (325)
56 cd03315 MLE_like Muconate lact 98.8 1.6E-07 3.6E-12 88.0 15.4 121 161-324 87-209 (265)
57 PRK04180 pyridoxal biosynthesi 98.8 7.4E-08 1.6E-12 89.3 12.3 139 164-333 27-242 (293)
58 KOG2334 tRNA-dihydrouridine sy 98.8 1.9E-08 4E-13 96.6 8.1 142 174-335 106-252 (477)
59 PRK14024 phosphoribosyl isomer 98.8 1.2E-07 2.6E-12 87.8 13.1 146 165-339 88-236 (241)
60 cd03329 MR_like_4 Mandelate ra 98.8 1.5E-07 3.3E-12 92.4 14.5 123 161-324 145-270 (368)
61 PRK13585 1-(5-phosphoribosyl)- 98.8 1.8E-07 4E-12 86.4 14.1 145 165-340 89-237 (241)
62 cd02811 IDI-2_FMN Isopentenyl- 98.7 2.1E-07 4.6E-12 89.8 14.4 132 171-330 137-289 (326)
63 cd04732 HisA HisA. Phosphorib 98.7 3.4E-07 7.3E-12 84.2 13.9 143 165-337 86-231 (234)
64 cd04731 HisF The cyclase subun 98.6 3E-07 6.4E-12 85.2 12.1 81 250-332 149-230 (243)
65 PRK05458 guanosine 5'-monophos 98.6 9.9E-07 2.1E-11 84.5 15.7 129 164-333 99-238 (326)
66 PRK01130 N-acetylmannosamine-6 98.6 7.6E-07 1.7E-11 81.2 13.4 134 165-338 79-214 (221)
67 TIGR03572 WbuZ glycosyl amidat 98.6 7E-07 1.5E-11 82.1 13.2 75 252-328 155-230 (232)
68 cd04731 HisF The cyclase subun 98.6 2.1E-07 4.6E-12 86.1 9.4 88 251-341 28-116 (243)
69 PRK00748 1-(5-phosphoribosyl)- 98.6 6E-07 1.3E-11 82.4 12.1 78 252-331 148-226 (233)
70 PRK08649 inosine 5-monophospha 98.6 2.9E-06 6.2E-11 82.9 17.3 101 211-328 117-218 (368)
71 cd04732 HisA HisA. Phosphorib 98.5 4.1E-07 8.9E-12 83.6 9.7 88 252-342 31-119 (234)
72 cd03328 MR_like_3 Mandelate ra 98.5 1.6E-06 3.4E-11 84.8 13.5 120 162-324 141-264 (352)
73 TIGR00007 phosphoribosylformim 98.5 1.5E-06 3.2E-11 79.7 12.6 77 252-331 147-224 (230)
74 COG0352 ThiE Thiamine monophos 98.5 9.4E-06 2E-10 73.1 17.1 105 218-340 94-201 (211)
75 PRK01033 imidazole glycerol ph 98.5 1.1E-06 2.3E-11 82.2 11.6 84 252-337 154-238 (258)
76 PRK02083 imidazole glycerol ph 98.5 5.9E-07 1.3E-11 83.7 9.4 88 252-342 32-120 (253)
77 cd03327 MR_like_2 Mandelate ra 98.5 3.2E-06 7E-11 82.2 15.0 128 161-324 122-251 (341)
78 cd03321 mandelate_racemase Man 98.5 1.2E-06 2.6E-11 85.7 11.9 121 162-324 144-266 (355)
79 cd02922 FCB2_FMN Flavocytochro 98.5 2.5E-05 5.3E-10 75.9 20.8 151 164-333 134-308 (344)
80 TIGR00735 hisF imidazoleglycer 98.5 2.5E-06 5.4E-11 79.6 13.5 139 164-331 86-235 (254)
81 cd04729 NanE N-acetylmannosami 98.5 1.8E-06 3.8E-11 78.7 12.0 133 164-335 82-216 (219)
82 COG4948 L-alanine-DL-glutamate 98.5 2.3E-06 5E-11 84.2 13.7 122 161-324 145-268 (372)
83 cd03326 MR_like_1 Mandelate ra 98.5 2.3E-06 5E-11 84.5 13.2 121 162-324 163-289 (385)
84 cd00945 Aldolase_Class_I Class 98.4 1E-05 2.2E-10 71.8 15.7 133 161-325 65-201 (201)
85 PRK06512 thiamine-phosphate py 98.4 1.9E-05 4.1E-10 72.0 17.4 105 218-339 100-206 (221)
86 cd04737 LOX_like_FMN L-Lactate 98.4 6.3E-06 1.4E-10 80.0 14.2 102 213-332 208-312 (351)
87 TIGR00735 hisF imidazoleglycer 98.4 1.5E-06 3.3E-11 81.0 9.4 87 252-341 32-119 (254)
88 PRK06806 fructose-bisphosphate 98.4 5.6E-05 1.2E-09 71.3 19.6 196 89-332 28-237 (281)
89 cd03324 rTSbeta_L-fuconate_deh 98.4 8.7E-06 1.9E-10 81.1 14.9 120 162-324 199-323 (415)
90 PRK07695 transcriptional regul 98.4 1.7E-05 3.7E-10 71.2 15.4 82 256-339 108-191 (201)
91 TIGR01306 GMP_reduct_2 guanosi 98.3 1.2E-05 2.5E-10 76.9 14.4 124 169-332 101-234 (321)
92 TIGR02708 L_lactate_ox L-lacta 98.3 6.9E-06 1.5E-10 80.0 13.1 98 215-330 217-317 (367)
93 PRK15072 bifunctional D-altron 98.3 1.6E-05 3.4E-10 79.2 15.0 144 162-324 130-286 (404)
94 PRK14017 galactonate dehydrata 98.3 1.5E-05 3.2E-10 78.8 14.6 129 162-324 127-257 (382)
95 PRK07315 fructose-bisphosphate 98.3 0.00012 2.5E-09 69.6 19.6 199 89-339 28-244 (293)
96 cd03322 rpsA The starvation se 98.3 1.3E-05 2.8E-10 78.6 13.6 114 161-324 128-243 (361)
97 cd03325 D-galactonate_dehydrat 98.3 1.6E-05 3.5E-10 77.6 14.1 128 163-324 127-256 (352)
98 TIGR03151 enACPred_II putative 98.3 1.9E-05 4.1E-10 75.7 14.0 78 254-333 120-198 (307)
99 cd02808 GltS_FMN Glutamate syn 98.3 1.6E-05 3.5E-10 78.7 13.8 106 212-330 199-319 (392)
100 PF04131 NanE: Putative N-acet 98.3 1.4E-05 3.1E-10 69.9 11.7 130 164-337 54-184 (192)
101 cd04727 pdxS PdxS is a subunit 98.2 6.4E-05 1.4E-09 69.8 16.2 141 147-332 48-232 (283)
102 PRK13125 trpA tryptophan synth 98.2 2.6E-05 5.7E-10 72.3 14.0 154 161-330 18-219 (244)
103 PRK02615 thiamine-phosphate py 98.2 7.9E-05 1.7E-09 72.2 17.2 102 218-337 230-334 (347)
104 TIGR01769 GGGP geranylgeranylg 98.2 9.2E-05 2E-09 66.5 15.9 74 247-325 131-205 (205)
105 TIGR01163 rpe ribulose-phospha 98.2 3.8E-05 8.3E-10 69.1 13.5 42 297-339 166-207 (210)
106 PRK06843 inosine 5-monophospha 98.2 3.5E-05 7.6E-10 75.9 13.8 134 163-336 154-296 (404)
107 PRK02714 O-succinylbenzoate sy 98.2 3.2E-05 6.8E-10 74.6 13.3 121 162-324 121-246 (320)
108 PRK06801 hypothetical protein; 98.1 0.00042 9.1E-09 65.5 20.1 194 89-330 28-238 (286)
109 TIGR02534 mucon_cyclo muconate 98.1 3.2E-05 7E-10 76.0 12.9 113 171-324 154-267 (368)
110 PRK15440 L-rhamnonate dehydrat 98.1 4.4E-05 9.5E-10 75.6 13.7 118 171-324 169-290 (394)
111 TIGR01302 IMP_dehydrog inosine 98.1 5.1E-05 1.1E-09 76.5 14.1 141 164-344 226-377 (450)
112 TIGR01859 fruc_bis_ald_ fructo 98.1 0.00049 1.1E-08 65.0 19.7 140 165-330 88-235 (282)
113 cd03318 MLE Muconate Lactonizi 98.1 4.2E-05 9E-10 75.1 13.0 118 165-324 148-268 (365)
114 TIGR03572 WbuZ glycosyl amidat 98.1 1.8E-05 3.9E-10 72.7 9.6 87 252-341 32-119 (232)
115 cd03323 D-glucarate_dehydratas 98.1 3.9E-05 8.5E-10 76.1 12.5 117 163-324 172-290 (395)
116 PTZ00314 inosine-5'-monophosph 98.1 5.1E-05 1.1E-09 77.2 13.3 140 164-343 243-393 (495)
117 PF02581 TMP-TENI: Thiamine mo 98.1 0.0002 4.3E-09 63.2 15.4 91 219-327 86-179 (180)
118 PRK02083 imidazole glycerol ph 98.1 0.00011 2.4E-09 68.4 14.4 78 252-331 155-233 (253)
119 TIGR03247 glucar-dehydr glucar 98.1 4.8E-05 1E-09 76.4 12.7 118 163-324 184-308 (441)
120 PRK03512 thiamine-phosphate py 98.0 0.00034 7.4E-09 63.3 16.8 81 257-339 116-200 (211)
121 PRK00748 1-(5-phosphoribosyl)- 98.0 2.5E-05 5.4E-10 71.7 9.3 87 252-341 32-119 (233)
122 PLN02535 glycolate oxidase 98.0 8.9E-05 1.9E-09 72.3 13.3 103 213-333 210-315 (364)
123 cd04728 ThiG Thiazole synthase 98.0 0.0002 4.4E-09 65.3 14.5 133 162-334 77-215 (248)
124 cd03320 OSBS o-Succinylbenzoat 98.0 4.1E-05 8.9E-10 71.7 10.3 116 165-324 88-205 (263)
125 PLN02274 inosine-5'-monophosph 98.0 0.00011 2.3E-09 75.0 13.7 142 164-345 250-402 (505)
126 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.0003 6.5E-09 62.9 15.1 130 167-339 70-200 (202)
127 PRK14024 phosphoribosyl isomer 98.0 5.8E-05 1.3E-09 69.8 10.7 85 253-341 35-120 (241)
128 PLN02334 ribulose-phosphate 3- 98.0 0.00017 3.7E-09 66.1 13.6 128 168-339 82-216 (229)
129 PRK00507 deoxyribose-phosphate 98.0 0.0002 4.3E-09 65.3 13.6 132 164-328 77-211 (221)
130 PRK07807 inosine 5-monophospha 98.0 0.00012 2.6E-09 74.2 13.3 147 152-338 217-372 (479)
131 PRK07028 bifunctional hexulose 97.9 0.00024 5.1E-09 71.4 15.0 127 166-335 73-200 (430)
132 PRK13585 1-(5-phosphoribosyl)- 97.9 5.3E-05 1.1E-09 70.0 9.4 87 253-342 35-122 (241)
133 TIGR03128 RuMP_HxlA 3-hexulose 97.9 0.00058 1.3E-08 61.4 15.8 129 166-337 68-198 (206)
134 TIGR01949 AroFGH_arch predicte 97.9 0.00033 7.3E-09 65.4 14.6 137 164-336 93-238 (258)
135 PF00478 IMPDH: IMP dehydrogen 97.9 0.00014 3.1E-09 70.3 12.2 130 164-334 110-249 (352)
136 cd03317 NAAAR N-acylamino acid 97.9 0.00021 4.7E-09 69.8 13.8 118 161-324 139-257 (354)
137 PRK07107 inosine 5-monophospha 97.9 0.00016 3.5E-09 73.6 13.2 134 163-335 243-391 (502)
138 TIGR01927 menC_gamma/gm+ o-suc 97.9 0.00024 5.1E-09 68.2 13.7 110 172-324 122-235 (307)
139 PRK00208 thiG thiazole synthas 97.9 0.00045 9.8E-09 63.1 14.6 134 161-334 76-215 (250)
140 cd04724 Tryptophan_synthase_al 97.9 0.00028 6.1E-09 65.3 13.5 154 161-329 14-219 (242)
141 TIGR00343 pyridoxal 5'-phospha 97.9 0.0015 3.2E-08 60.9 17.8 51 283-334 184-239 (287)
142 TIGR00262 trpA tryptophan synt 97.9 0.0005 1.1E-08 64.2 14.9 155 161-330 24-232 (256)
143 PRK02901 O-succinylbenzoate sy 97.9 0.00021 4.6E-09 69.0 12.8 111 173-324 101-213 (327)
144 cd00429 RPE Ribulose-5-phospha 97.9 0.00037 8.1E-09 62.6 13.7 52 287-339 152-208 (211)
145 COG0106 HisA Phosphoribosylfor 97.8 0.00012 2.6E-09 66.6 10.0 88 253-343 34-122 (241)
146 PF04481 DUF561: Protein of un 97.8 0.00016 3.5E-09 64.2 10.3 134 169-328 76-217 (242)
147 PRK07998 gatY putative fructos 97.8 0.0034 7.3E-08 59.2 19.8 190 89-330 28-234 (283)
148 TIGR01303 IMP_DH_rel_1 IMP deh 97.8 0.00013 2.7E-09 73.9 11.0 144 154-337 217-369 (475)
149 TIGR02129 hisA_euk phosphoribo 97.8 9.7E-05 2.1E-09 68.2 9.3 80 253-341 41-124 (253)
150 TIGR00693 thiE thiamine-phosph 97.8 0.0016 3.4E-08 58.1 16.7 80 258-339 111-194 (196)
151 PRK05096 guanosine 5'-monophos 97.8 0.00039 8.5E-09 66.3 13.2 135 163-337 110-254 (346)
152 PRK08185 hypothetical protein; 97.8 0.002 4.3E-08 60.8 17.9 192 89-328 23-231 (283)
153 cd00331 IGPS Indole-3-glycerol 97.8 0.0011 2.4E-08 60.2 15.5 79 256-339 134-215 (217)
154 cd00958 DhnA Class I fructose- 97.8 0.00073 1.6E-08 62.1 14.4 76 253-339 146-228 (235)
155 PRK13587 1-(5-phosphoribosyl)- 97.8 0.00012 2.5E-09 67.5 8.8 85 254-341 35-121 (234)
156 PRK07226 fructose-bisphosphate 97.8 0.00044 9.4E-09 65.0 12.7 138 163-335 95-241 (267)
157 TIGR01928 menC_lowGC/arch o-su 97.7 0.00051 1.1E-08 66.4 13.3 117 162-324 135-252 (324)
158 PF01645 Glu_synthase: Conserv 97.7 0.00025 5.3E-09 69.1 10.8 107 211-330 187-308 (368)
159 PRK12738 kbaY tagatose-bisphos 97.7 0.0033 7E-08 59.4 17.8 191 89-328 28-235 (286)
160 PRK09195 gatY tagatose-bisphos 97.7 0.0024 5.1E-08 60.3 16.8 193 89-329 28-236 (284)
161 PRK07709 fructose-bisphosphate 97.7 0.0039 8.5E-08 58.9 18.2 192 89-328 28-236 (285)
162 cd02812 PcrB_like PcrB_like pr 97.7 0.00028 6E-09 64.0 10.1 84 248-339 133-218 (219)
163 PRK12290 thiE thiamine-phospha 97.7 0.0018 3.8E-08 64.2 16.4 79 258-338 315-405 (437)
164 TIGR00126 deoC deoxyribose-pho 97.7 0.00089 1.9E-08 60.5 13.3 131 164-327 73-206 (211)
165 PRK01033 imidazole glycerol ph 97.7 0.00021 4.6E-09 66.8 9.6 87 252-341 32-119 (258)
166 PLN02979 glycolate oxidase 97.7 0.00069 1.5E-08 65.7 13.3 98 215-330 212-312 (366)
167 TIGR01305 GMP_reduct_1 guanosi 97.7 0.001 2.2E-08 63.6 14.1 129 167-335 112-251 (343)
168 cd00959 DeoC 2-deoxyribose-5-p 97.7 0.001 2.2E-08 59.9 13.5 128 164-324 72-202 (203)
169 PLN02446 (5-phosphoribosyl)-5- 97.7 0.00022 4.7E-09 66.2 9.3 83 252-341 45-131 (262)
170 COG0107 HisF Imidazoleglycerol 97.7 0.00017 3.8E-09 64.7 8.2 84 253-342 33-120 (256)
171 PRK11197 lldD L-lactate dehydr 97.7 0.00084 1.8E-08 65.9 13.8 97 216-330 235-334 (381)
172 TIGR00167 cbbA ketose-bisphosp 97.7 0.004 8.6E-08 59.0 17.9 192 89-328 28-239 (288)
173 PF01070 FMN_dh: FMN-dependent 97.7 0.00025 5.5E-09 69.2 10.0 100 213-330 212-314 (356)
174 cd04736 MDH_FMN Mandelate dehy 97.7 0.00038 8.2E-09 67.8 10.9 99 213-329 223-322 (361)
175 PRK13111 trpA tryptophan synth 97.7 0.0018 3.8E-08 60.5 14.9 155 161-330 26-233 (258)
176 PLN02898 HMP-P kinase/thiamin- 97.6 0.0023 4.9E-08 65.6 17.1 81 257-339 404-489 (502)
177 PLN02591 tryptophan synthase 97.6 0.0019 4.1E-08 59.9 14.8 155 161-330 16-223 (250)
178 CHL00200 trpA tryptophan synth 97.6 0.0019 4.1E-08 60.4 14.8 154 161-329 29-235 (263)
179 COG0269 SgbH 3-hexulose-6-phos 97.6 0.0019 4.1E-08 57.8 13.9 131 165-337 71-204 (217)
180 cd00405 PRAI Phosphoribosylant 97.6 0.00073 1.6E-08 60.7 11.6 121 168-333 67-189 (203)
181 PRK04128 1-(5-phosphoribosyl)- 97.6 0.00025 5.5E-09 65.0 8.6 83 253-340 33-116 (228)
182 PRK13587 1-(5-phosphoribosyl)- 97.6 0.0015 3.3E-08 60.1 13.8 136 164-330 88-226 (234)
183 cd00308 enolase_like Enolase-s 97.6 0.00054 1.2E-08 62.8 10.7 92 215-324 81-174 (229)
184 PRK14114 1-(5-phosphoribosyl)- 97.6 0.00028 6E-09 65.2 8.8 84 253-340 33-117 (241)
185 PRK08610 fructose-bisphosphate 97.6 0.0077 1.7E-07 56.9 18.5 192 89-328 28-236 (286)
186 TIGR01858 tag_bisphos_ald clas 97.6 0.0079 1.7E-07 56.8 18.5 193 89-329 26-234 (282)
187 PRK13586 1-(5-phosphoribosyl)- 97.6 0.00054 1.2E-08 63.0 10.5 85 253-341 33-118 (232)
188 PRK09517 multifunctional thiam 97.6 0.002 4.4E-08 69.2 16.4 104 218-335 91-204 (755)
189 PF00977 His_biosynth: Histidi 97.6 8.5E-05 1.8E-09 68.2 5.1 85 254-341 33-118 (229)
190 PRK05581 ribulose-phosphate 3- 97.6 0.0011 2.3E-08 60.2 12.3 40 299-339 173-212 (220)
191 cd00564 TMP_TenI Thiamine mono 97.6 0.00056 1.2E-08 60.4 10.2 81 257-339 109-192 (196)
192 KOG1436 Dihydroorotate dehydro 97.6 0.0039 8.4E-08 58.6 15.7 163 149-341 188-377 (398)
193 PRK05567 inosine 5'-monophosph 97.6 0.001 2.2E-08 67.8 13.2 130 164-333 230-368 (486)
194 PRK00278 trpC indole-3-glycero 97.6 0.003 6.6E-08 59.1 15.3 54 285-339 198-254 (260)
195 cd00452 KDPG_aldolase KDPG and 97.5 0.0039 8.4E-08 55.5 14.8 62 259-329 113-175 (190)
196 TIGR01304 IMP_DH_rel_2 IMP deh 97.5 0.0018 3.9E-08 63.4 13.4 134 162-332 143-291 (369)
197 PF03437 BtpA: BtpA family; I 97.5 0.038 8.3E-07 51.3 21.3 172 84-331 60-233 (254)
198 PRK08999 hypothetical protein; 97.5 0.002 4.3E-08 61.8 13.5 70 257-328 240-311 (312)
199 PRK12737 gatY tagatose-bisphos 97.5 0.0097 2.1E-07 56.2 17.7 193 89-329 28-236 (284)
200 PRK08649 inosine 5-monophospha 97.5 0.0015 3.3E-08 64.0 12.7 137 163-335 143-295 (368)
201 CHL00162 thiG thiamin biosynth 97.5 0.0037 8.1E-08 57.2 14.2 104 214-335 123-228 (267)
202 TIGR00007 phosphoribosylformim 97.5 0.00075 1.6E-08 61.8 9.7 86 253-341 31-117 (230)
203 TIGR01768 GGGP-family geranylg 97.5 0.00079 1.7E-08 61.1 9.3 201 51-339 18-222 (223)
204 TIGR01919 hisA-trpF 1-(5-phosp 97.4 0.0013 2.8E-08 60.9 10.8 84 254-341 35-119 (243)
205 PRK09140 2-dehydro-3-deoxy-6-p 97.4 0.0091 2E-07 53.9 15.3 46 285-331 138-185 (206)
206 PRK14114 1-(5-phosphoribosyl)- 97.4 0.0033 7E-08 58.2 12.6 138 164-332 85-230 (241)
207 cd00947 TBP_aldolase_IIB Tagat 97.4 0.025 5.4E-07 53.3 18.6 193 89-329 23-230 (276)
208 cd00377 ICL_PEPM Members of th 97.3 0.007 1.5E-07 56.1 14.3 141 162-329 85-230 (243)
209 COG0107 HisF Imidazoleglycerol 97.3 0.0035 7.6E-08 56.4 11.3 135 165-328 87-232 (256)
210 PRK13307 bifunctional formalde 97.3 0.0076 1.6E-07 59.4 14.8 124 167-335 243-368 (391)
211 cd03332 LMO_FMN L-Lactate 2-mo 97.3 0.0019 4.1E-08 63.5 10.6 98 214-329 241-341 (383)
212 COG0106 HisA Phosphoribosylfor 97.3 0.003 6.5E-08 57.6 11.0 139 164-332 87-228 (241)
213 PRK12857 fructose-1,6-bisphosp 97.3 0.039 8.4E-07 52.2 18.9 193 89-329 28-236 (284)
214 PF03060 NMO: Nitronate monoox 97.3 0.0052 1.1E-07 59.6 13.4 123 163-333 102-227 (330)
215 cd04723 HisA_HisF Phosphoribos 97.3 0.0014 3.1E-08 60.2 8.8 85 253-342 38-123 (233)
216 PRK00043 thiE thiamine-phospha 97.2 0.0026 5.6E-08 57.3 10.3 79 258-338 119-201 (212)
217 TIGR01919 hisA-trpF 1-(5-phosp 97.2 0.0075 1.6E-07 55.8 13.3 140 164-332 86-232 (243)
218 PF05690 ThiG: Thiazole biosyn 97.2 0.027 5.9E-07 51.1 16.1 132 161-333 76-212 (247)
219 PF00977 His_biosynth: Histidi 97.2 0.0016 3.5E-08 59.8 8.5 136 164-330 85-225 (229)
220 TIGR02317 prpB methylisocitrat 97.2 0.06 1.3E-06 51.0 18.9 140 162-330 89-234 (285)
221 cd01572 QPRTase Quinolinate ph 97.2 0.006 1.3E-07 57.3 12.0 106 196-329 145-258 (268)
222 PRK13399 fructose-1,6-bisphosp 97.2 0.044 9.5E-07 53.1 18.1 200 89-327 28-279 (347)
223 PRK09196 fructose-1,6-bisphosp 97.1 0.042 9.2E-07 53.2 17.7 199 89-328 28-280 (347)
224 PF00290 Trp_syntA: Tryptophan 97.1 0.0079 1.7E-07 56.1 12.3 155 161-330 24-231 (259)
225 cd04723 HisA_HisF Phosphoribos 97.1 0.013 2.9E-07 53.8 13.8 76 252-331 148-224 (233)
226 PRK08883 ribulose-phosphate 3- 97.1 0.0095 2.1E-07 54.3 12.6 124 171-338 78-208 (220)
227 COG0274 DeoC Deoxyribose-phosp 97.1 0.0093 2E-07 53.8 12.1 133 164-328 80-215 (228)
228 PRK07084 fructose-bisphosphate 97.1 0.048 1E-06 52.3 17.7 191 89-328 34-271 (321)
229 PRK04169 geranylgeranylglycery 97.1 0.0053 1.1E-07 56.3 10.8 196 54-339 26-228 (232)
230 PLN02493 probable peroxisomal 97.1 0.0031 6.6E-08 61.6 9.5 98 215-330 213-313 (367)
231 PRK05835 fructose-bisphosphate 97.1 0.049 1.1E-06 51.9 17.3 193 89-329 27-259 (307)
232 PRK15129 L-Ala-D/L-Glu epimera 97.1 0.014 3E-07 56.3 14.0 72 161-268 131-202 (321)
233 TIGR00078 nadC nicotinate-nucl 97.1 0.01 2.2E-07 55.6 12.5 106 196-329 141-254 (265)
234 TIGR02129 hisA_euk phosphoribo 97.1 0.008 1.7E-07 55.7 11.5 139 165-330 88-237 (253)
235 COG3010 NanE Putative N-acetyl 97.0 0.022 4.7E-07 50.6 12.7 74 259-335 143-218 (229)
236 TIGR01521 FruBisAldo_II_B fruc 96.9 0.084 1.8E-06 51.1 17.7 199 89-328 26-278 (347)
237 cd01568 QPRTase_NadC Quinolina 96.9 0.021 4.6E-07 53.6 13.5 109 196-332 144-262 (269)
238 PLN02617 imidazole glycerol ph 96.9 0.004 8.6E-08 64.0 9.1 88 253-341 270-382 (538)
239 PRK08072 nicotinate-nucleotide 96.9 0.015 3.4E-07 54.7 12.4 88 214-329 174-264 (277)
240 PLN02617 imidazole glycerol ph 96.9 0.018 4E-07 59.2 13.8 149 164-329 337-516 (538)
241 PLN02446 (5-phosphoribosyl)-5- 96.9 0.015 3.2E-07 54.1 11.9 139 165-328 95-241 (262)
242 KOG0134 NADH:flavin oxidoreduc 96.9 0.00017 3.6E-09 70.1 -1.0 107 12-118 15-133 (400)
243 PTZ00170 D-ribulose-5-phosphat 96.9 0.013 2.8E-07 53.7 11.5 130 166-337 80-213 (228)
244 PRK09197 fructose-bisphosphate 96.9 0.06 1.3E-06 52.0 16.4 208 89-328 31-282 (350)
245 PRK04302 triosephosphate isome 96.9 0.022 4.8E-07 52.0 13.0 81 258-339 129-216 (223)
246 COG1646 Predicted phosphate-bi 96.9 0.029 6.4E-07 50.7 13.2 52 288-340 182-235 (240)
247 PRK05105 O-succinylbenzoate sy 96.9 0.012 2.6E-07 56.9 11.6 105 173-323 127-235 (322)
248 PLN02980 2-oxoglutarate decarb 96.9 0.0093 2E-07 69.4 12.6 102 162-305 1093-1194(1655)
249 PRK13586 1-(5-phosphoribosyl)- 96.8 0.028 6.1E-07 51.6 13.0 136 164-330 85-223 (232)
250 COG2022 ThiG Uncharacterized e 96.8 0.031 6.8E-07 50.4 12.6 132 161-333 83-221 (262)
251 TIGR00734 hisAF_rel hisA/hisF 96.8 0.005 1.1E-07 56.2 7.9 81 253-339 39-122 (221)
252 COG0191 Fba Fructose/tagatose 96.8 0.078 1.7E-06 49.7 15.8 188 88-320 27-230 (286)
253 PF01791 DeoC: DeoC/LacD famil 96.8 0.012 2.7E-07 54.1 10.5 142 164-330 79-235 (236)
254 PF01188 MR_MLE: Mandelate rac 96.7 0.0094 2E-07 43.5 7.6 65 217-301 1-66 (67)
255 COG0159 TrpA Tryptophan syntha 96.7 0.11 2.3E-06 48.4 15.8 154 161-329 31-237 (265)
256 PF01116 F_bP_aldolase: Fructo 96.6 0.2 4.2E-06 47.6 17.7 140 164-329 86-239 (287)
257 COG5016 Pyruvate/oxaloacetate 96.6 0.018 4E-07 55.9 10.7 127 157-324 97-230 (472)
258 COG0036 Rpe Pentose-5-phosphat 96.6 0.044 9.5E-07 49.4 12.3 144 162-340 17-212 (220)
259 cd03314 MAL Methylaspartate am 96.6 0.032 7E-07 54.8 12.2 100 211-324 176-290 (369)
260 TIGR00259 thylakoid_BtpA membr 96.5 0.27 6E-06 45.7 17.3 188 59-330 41-232 (257)
261 PRK07455 keto-hydroxyglutarate 96.5 0.011 2.3E-07 52.6 7.7 65 258-330 120-185 (187)
262 TIGR01740 pyrF orotidine 5'-ph 96.5 0.069 1.5E-06 48.4 13.1 139 155-339 60-210 (213)
263 PRK11320 prpB 2-methylisocitra 96.5 0.32 6.9E-06 46.2 18.0 139 162-329 94-238 (292)
264 PRK05742 nicotinate-nucleotide 96.4 0.051 1.1E-06 51.2 12.3 107 196-330 153-266 (277)
265 cd00945 Aldolase_Class_I Class 96.4 0.058 1.2E-06 47.5 12.1 142 161-341 13-168 (201)
266 PRK06552 keto-hydroxyglutarate 96.4 0.15 3.3E-06 46.2 14.8 45 285-330 143-188 (213)
267 PRK07428 nicotinate-nucleotide 96.4 0.025 5.4E-07 53.6 10.0 111 196-330 159-276 (288)
268 TIGR00734 hisAF_rel hisA/hisF 96.4 0.02 4.3E-07 52.2 9.1 75 252-330 143-218 (221)
269 cd06556 ICL_KPHMT Members of t 96.4 0.14 3.1E-06 47.3 14.7 147 164-343 22-191 (240)
270 TIGR00343 pyridoxal 5'-phospha 96.4 0.06 1.3E-06 50.4 12.1 121 164-325 20-141 (287)
271 COG1304 idi Isopentenyl diphos 96.4 0.031 6.7E-07 54.6 10.7 71 258-330 234-307 (360)
272 PRK12858 tagatose 1,6-diphosph 96.3 0.098 2.1E-06 50.8 13.9 149 166-332 111-283 (340)
273 TIGR02320 PEP_mutase phosphoen 96.3 0.16 3.5E-06 48.1 14.9 140 162-328 93-243 (285)
274 PRK08005 epimerase; Validated 96.3 0.12 2.6E-06 46.7 13.3 123 169-338 76-204 (210)
275 TIGR01502 B_methylAsp_ase meth 96.3 0.095 2.1E-06 52.2 13.9 136 161-324 180-326 (408)
276 TIGR02319 CPEP_Pphonmut carbox 96.3 0.16 3.6E-06 48.2 14.7 136 164-329 95-237 (294)
277 PRK05283 deoxyribose-phosphate 96.3 0.093 2E-06 48.8 12.7 123 164-317 86-217 (257)
278 TIGR01060 eno phosphopyruvate 96.3 0.043 9.4E-07 55.0 11.4 109 207-324 212-335 (425)
279 PRK08745 ribulose-phosphate 3- 96.3 0.11 2.5E-06 47.3 13.1 137 148-337 67-211 (223)
280 COG0214 SNZ1 Pyridoxine biosyn 96.2 0.084 1.8E-06 47.7 11.7 46 290-336 200-248 (296)
281 cd00946 FBP_aldolase_IIA Class 96.2 0.58 1.3E-05 45.4 18.5 151 155-328 104-278 (345)
282 PRK13306 ulaD 3-keto-L-gulonat 96.2 0.064 1.4E-06 48.7 11.3 124 170-335 76-201 (216)
283 TIGR01520 FruBisAldo_II_A fruc 96.2 0.36 7.8E-06 46.9 16.7 120 206-328 147-290 (357)
284 PF00218 IGPS: Indole-3-glycer 96.2 0.081 1.7E-06 49.2 11.8 151 164-340 71-253 (254)
285 COG2513 PrpB PEP phosphonomuta 96.2 0.084 1.8E-06 49.5 11.8 156 164-343 28-202 (289)
286 cd04727 pdxS PdxS is a subunit 96.1 0.11 2.3E-06 48.7 12.4 121 164-325 18-139 (283)
287 COG2070 Dioxygenases related t 96.1 0.0095 2E-07 57.8 5.6 80 253-333 137-221 (336)
288 cd00408 DHDPS-like Dihydrodipi 96.1 0.1 2.3E-06 49.1 12.6 144 163-340 20-171 (281)
289 KOG2550 IMP dehydrogenase/GMP 96.0 0.04 8.7E-07 53.7 9.4 127 168-335 257-393 (503)
290 TIGR01182 eda Entner-Doudoroff 96.0 0.22 4.8E-06 44.8 13.4 45 286-331 137-182 (204)
291 PRK13813 orotidine 5'-phosphat 96.0 0.25 5.4E-06 44.6 14.0 128 168-337 74-204 (215)
292 PRK00230 orotidine 5'-phosphat 96.0 0.14 3E-06 47.0 12.4 130 165-338 71-220 (230)
293 COG0069 GltB Glutamate synthas 95.9 0.043 9.3E-07 55.1 9.1 114 197-330 279-408 (485)
294 cd01573 modD_like ModD; Quinol 95.9 0.047 1E-06 51.4 9.0 92 215-330 171-263 (272)
295 PRK08091 ribulose-phosphate 3- 95.8 0.38 8.3E-06 44.0 14.3 123 169-337 86-219 (228)
296 PRK11750 gltB glutamate syntha 95.8 0.071 1.5E-06 60.1 11.0 114 198-330 973-1101(1485)
297 cd00950 DHDPS Dihydrodipicolin 95.7 0.17 3.7E-06 47.8 12.4 125 162-317 22-154 (284)
298 PRK08227 autoinducer 2 aldolas 95.7 0.36 7.9E-06 45.1 14.2 129 167-335 100-236 (264)
299 PLN02858 fructose-bisphosphate 95.7 0.53 1.1E-05 54.0 18.1 194 89-330 1124-1336(1378)
300 PF04131 NanE: Putative N-acet 95.7 0.1 2.2E-06 46.0 9.7 115 164-324 2-118 (192)
301 PRK14057 epimerase; Provisiona 95.7 0.25 5.4E-06 45.9 12.7 137 148-338 80-234 (254)
302 PF01884 PcrB: PcrB family; I 95.7 0.026 5.6E-07 51.6 6.1 46 288-334 174-220 (230)
303 cd00331 IGPS Indole-3-glycerol 95.6 0.05 1.1E-06 49.3 8.0 74 251-330 32-106 (217)
304 cd00003 PNPsynthase Pyridoxine 95.6 0.12 2.7E-06 46.9 10.2 73 259-332 140-218 (234)
305 TIGR00222 panB 3-methyl-2-oxob 95.6 0.17 3.7E-06 47.2 11.4 78 249-342 159-236 (263)
306 cd00452 KDPG_aldolase KDPG and 95.6 0.44 9.4E-06 42.3 13.8 125 161-341 16-140 (190)
307 cd00453 FTBP_aldolase_II Fruct 95.6 1.4 3.1E-05 42.4 17.8 116 206-327 133-274 (340)
308 PRK00311 panB 3-methyl-2-oxobu 95.5 0.12 2.7E-06 48.3 10.2 78 249-342 160-237 (264)
309 TIGR00559 pdxJ pyridoxine 5'-p 95.5 0.26 5.6E-06 45.0 11.8 73 259-332 140-219 (237)
310 PRK05848 nicotinate-nucleotide 95.4 0.21 4.6E-06 47.0 11.4 106 196-329 145-261 (273)
311 cd03313 enolase Enolase: Enola 95.4 0.12 2.7E-06 51.5 10.3 101 215-324 213-334 (408)
312 TIGR02321 Pphn_pyruv_hyd phosp 95.3 0.39 8.4E-06 45.6 13.1 157 164-343 25-203 (290)
313 TIGR00674 dapA dihydrodipicoli 95.3 0.31 6.7E-06 46.1 12.5 129 164-324 22-157 (285)
314 COG0329 DapA Dihydrodipicolina 95.3 0.24 5.3E-06 47.3 11.7 125 161-316 25-157 (299)
315 PRK03170 dihydrodipicolinate s 95.3 0.33 7.2E-06 46.1 12.6 125 162-317 23-155 (292)
316 cd06556 ICL_KPHMT Members of t 95.2 0.25 5.4E-06 45.6 11.2 134 162-341 90-231 (240)
317 PRK05718 keto-hydroxyglutarate 95.2 0.46 1E-05 43.0 12.7 48 285-334 143-191 (212)
318 TIGR02319 CPEP_Pphonmut carbox 95.2 0.43 9.2E-06 45.4 12.9 156 164-342 26-200 (294)
319 PRK04128 1-(5-phosphoribosyl)- 95.2 0.29 6.2E-06 44.9 11.5 36 295-331 181-217 (228)
320 cd04739 DHOD_like Dihydroorota 95.2 0.76 1.6E-05 44.4 15.0 149 164-325 26-195 (325)
321 TIGR01182 eda Entner-Doudoroff 95.2 0.094 2E-06 47.1 8.0 81 248-340 18-99 (204)
322 PRK00077 eno enolase; Provisio 95.2 0.16 3.5E-06 50.9 10.6 102 214-324 215-334 (425)
323 cd02809 alpha_hydroxyacid_oxid 95.1 0.28 6E-06 46.9 11.5 92 219-324 108-199 (299)
324 PRK07565 dihydroorotate dehydr 95.1 0.29 6.4E-06 47.4 11.9 104 211-325 86-197 (334)
325 PRK05718 keto-hydroxyglutarate 95.1 0.1 2.2E-06 47.3 8.0 81 248-340 25-106 (212)
326 PRK05265 pyridoxine 5'-phospha 95.1 0.44 9.6E-06 43.5 12.0 72 259-332 143-220 (239)
327 COG0284 PyrF Orotidine-5'-phos 95.1 0.6 1.3E-05 43.1 13.1 132 164-339 79-228 (240)
328 PLN02424 ketopantoate hydroxym 95.0 0.27 5.8E-06 47.2 10.9 80 249-342 181-263 (332)
329 PRK06015 keto-hydroxyglutarate 95.0 0.11 2.4E-06 46.5 8.0 81 248-340 14-95 (201)
330 cd06557 KPHMT-like Ketopantoat 95.0 0.22 4.7E-06 46.4 10.2 78 249-342 157-234 (254)
331 PRK06559 nicotinate-nucleotide 95.0 0.14 3E-06 48.5 9.0 108 196-329 160-273 (290)
332 TIGR01305 GMP_reduct_1 guanosi 95.0 0.078 1.7E-06 50.9 7.2 68 252-325 108-178 (343)
333 PRK06852 aldolase; Validated 95.0 0.75 1.6E-05 43.9 13.8 82 248-334 186-274 (304)
334 PRK13397 3-deoxy-7-phosphohept 94.9 3.1 6.8E-05 38.6 21.1 205 16-325 3-219 (250)
335 cd04725 OMP_decarboxylase_like 94.8 0.65 1.4E-05 42.1 12.7 140 155-338 60-213 (216)
336 cd00951 KDGDH 5-dehydro-4-deox 94.8 0.7 1.5E-05 43.9 13.4 128 150-315 17-148 (289)
337 PRK13802 bifunctional indole-3 94.8 0.82 1.8E-05 48.6 14.9 148 164-338 73-253 (695)
338 PRK12330 oxaloacetate decarbox 94.8 0.43 9.4E-06 48.7 12.3 126 158-323 97-230 (499)
339 TIGR02127 pyrF_sub2 orotidine 94.8 3.3 7.1E-05 38.7 17.3 145 155-338 97-257 (261)
340 COG0800 Eda 2-keto-3-deoxy-6-p 94.7 0.15 3.3E-06 45.7 8.0 79 248-338 23-102 (211)
341 PF03740 PdxJ: Pyridoxal phosp 94.7 0.047 1E-06 49.9 4.9 152 163-332 24-221 (239)
342 TIGR02321 Pphn_pyruv_hyd phosp 94.7 4 8.7E-05 38.8 19.4 140 163-329 92-239 (290)
343 cd04742 NPD_FabD 2-Nitropropan 94.7 0.14 3.1E-06 50.9 8.5 76 255-333 168-256 (418)
344 cd08205 RuBisCO_IV_RLP Ribulos 94.7 0.42 9E-06 47.0 11.7 87 161-273 146-233 (367)
345 TIGR03249 KdgD 5-dehydro-4-deo 94.6 0.83 1.8E-05 43.5 13.4 127 150-315 22-153 (296)
346 PF07745 Glyco_hydro_53: Glyco 94.6 1.1 2.3E-05 43.5 14.0 174 89-302 57-235 (332)
347 PRK11840 bifunctional sulfur c 94.6 1.1 2.3E-05 43.0 13.7 118 214-336 152-289 (326)
348 PRK03620 5-dehydro-4-deoxygluc 94.6 0.24 5.3E-06 47.3 9.6 126 150-314 24-154 (303)
349 PF13714 PEP_mutase: Phosphoen 94.6 0.46 1E-05 43.8 11.0 155 164-341 19-189 (238)
350 cd04743 NPD_PKS 2-Nitropropane 94.6 0.2 4.3E-06 48.1 8.9 80 254-334 114-211 (320)
351 PRK13957 indole-3-glycerol-pho 94.5 2.6 5.7E-05 39.0 15.8 150 164-340 64-245 (247)
352 TIGR02313 HpaI-NOT-DapA 2,4-di 94.5 0.59 1.3E-05 44.5 12.1 129 150-315 17-153 (294)
353 cd00377 ICL_PEPM Members of th 94.5 0.96 2.1E-05 41.8 13.0 154 164-341 19-194 (243)
354 cd00954 NAL N-Acetylneuraminic 94.5 0.8 1.7E-05 43.4 12.9 123 163-315 23-154 (288)
355 cd00952 CHBPH_aldolase Trans-o 94.5 0.5 1.1E-05 45.4 11.5 121 163-314 31-160 (309)
356 PF01081 Aldolase: KDPG and KH 94.4 0.1 2.2E-06 46.6 6.2 81 248-340 18-99 (196)
357 PRK11320 prpB 2-methylisocitra 94.4 0.91 2E-05 43.2 12.9 155 164-341 27-200 (292)
358 PF00478 IMPDH: IMP dehydrogen 94.4 0.11 2.4E-06 50.5 6.9 67 252-325 109-177 (352)
359 PRK04147 N-acetylneuraminate l 94.4 0.94 2E-05 43.0 13.2 122 163-315 26-156 (293)
360 TIGR02317 prpB methylisocitrat 94.4 1.1 2.4E-05 42.5 13.4 155 164-342 23-196 (285)
361 PRK07259 dihydroorotate dehydr 94.4 0.56 1.2E-05 44.7 11.7 142 165-324 27-188 (301)
362 cd02810 DHOD_DHPD_FMN Dihydroo 94.4 0.82 1.8E-05 43.2 12.7 86 229-325 100-196 (289)
363 PRK06543 nicotinate-nucleotide 94.3 0.29 6.3E-06 46.2 9.2 110 196-331 152-271 (281)
364 PF00701 DHDPS: Dihydrodipicol 94.3 0.5 1.1E-05 44.8 11.0 124 161-315 22-153 (289)
365 cd04823 ALAD_PBGS_aspartate_ri 94.3 0.75 1.6E-05 43.7 11.8 167 160-341 53-260 (320)
366 PF03437 BtpA: BtpA family; I 94.2 2.1 4.5E-05 39.9 14.6 161 155-343 23-200 (254)
367 TIGR02814 pfaD_fam PfaD family 94.2 0.2 4.4E-06 50.2 8.5 37 296-333 224-261 (444)
368 PRK12581 oxaloacetate decarbox 94.0 0.86 1.9E-05 46.1 12.4 134 158-334 105-251 (468)
369 PF13714 PEP_mutase: Phosphoen 93.9 1.4 3E-05 40.7 12.7 136 162-329 86-223 (238)
370 PRK01222 N-(5'-phosphoribosyl) 93.9 1.7 3.7E-05 39.2 13.2 38 295-332 153-190 (210)
371 PRK06852 aldolase; Validated 93.9 2.3 5E-05 40.6 14.5 151 86-315 150-301 (304)
372 TIGR00683 nanA N-acetylneurami 93.8 0.89 1.9E-05 43.2 11.8 144 163-340 23-176 (290)
373 TIGR01334 modD putative molybd 93.8 0.31 6.6E-06 46.0 8.4 95 214-332 175-270 (277)
374 PRK06552 keto-hydroxyglutarate 93.8 0.31 6.7E-06 44.2 8.1 81 248-340 23-107 (213)
375 PRK09283 delta-aminolevulinic 93.8 1.1 2.4E-05 42.7 12.0 164 161-341 59-263 (323)
376 cd00384 ALAD_PBGS Porphobilino 93.8 1.1 2.4E-05 42.4 11.9 171 160-347 50-263 (314)
377 TIGR01417 PTS_I_fam phosphoeno 93.7 10 0.00022 39.6 20.2 210 59-330 290-530 (565)
378 cd00953 KDG_aldolase KDG (2-ke 93.7 1.8 4E-05 40.8 13.6 121 162-316 21-148 (279)
379 COG0135 TrpF Phosphoribosylant 93.7 2.8 6.1E-05 37.8 13.9 121 167-332 68-190 (208)
380 PF01680 SOR_SNZ: SOR/SNZ fami 93.6 0.97 2.1E-05 39.4 10.2 118 164-322 24-142 (208)
381 PRK13384 delta-aminolevulinic 93.6 1.2 2.6E-05 42.4 11.7 164 161-341 61-264 (322)
382 PLN02495 oxidoreductase, actin 93.6 1 2.2E-05 44.5 12.0 103 218-329 104-218 (385)
383 PRK07107 inosine 5-monophospha 93.6 0.19 4.1E-06 51.5 7.0 68 251-324 242-311 (502)
384 PRK02048 4-hydroxy-3-methylbut 93.5 3.8 8.3E-05 42.4 16.1 210 16-269 11-234 (611)
385 PRK02227 hypothetical protein; 93.5 2.8 6.1E-05 38.5 13.7 128 164-325 10-151 (238)
386 PRK06978 nicotinate-nucleotide 93.5 0.43 9.3E-06 45.3 8.7 111 196-332 169-284 (294)
387 cd00429 RPE Ribulose-5-phospha 93.5 1.1 2.4E-05 39.8 11.3 121 162-325 13-134 (211)
388 cd07948 DRE_TIM_HCS Saccharomy 93.5 0.87 1.9E-05 42.6 10.8 135 165-323 75-214 (262)
389 PRK13398 3-deoxy-7-phosphohept 93.5 6.8 0.00015 36.8 19.2 99 215-325 124-231 (266)
390 cd04740 DHOD_1B_like Dihydroor 93.5 0.98 2.1E-05 42.9 11.4 85 229-324 91-185 (296)
391 PRK05581 ribulose-phosphate 3- 93.4 0.93 2E-05 40.8 10.6 119 162-325 17-138 (220)
392 PLN02746 hydroxymethylglutaryl 93.4 0.8 1.7E-05 44.6 10.6 142 165-323 125-271 (347)
393 PLN02274 inosine-5'-monophosph 93.3 0.26 5.6E-06 50.6 7.6 68 252-325 249-317 (505)
394 PRK02412 aroD 3-dehydroquinate 93.3 1.8 4E-05 40.2 12.7 134 162-328 29-175 (253)
395 PF00682 HMGL-like: HMGL-like 93.3 1.1 2.3E-05 41.0 11.0 117 84-275 102-218 (237)
396 TIGR03569 NeuB_NnaB N-acetylne 93.2 1.5 3.2E-05 42.5 12.1 126 169-320 24-161 (329)
397 PF01729 QRPTase_C: Quinolinat 93.2 0.4 8.7E-06 41.8 7.5 108 197-328 44-158 (169)
398 PRK09250 fructose-bisphosphate 93.2 2.3 4.9E-05 41.3 13.2 84 249-333 216-326 (348)
399 PRK09140 2-dehydro-3-deoxy-6-p 93.2 0.45 9.7E-06 42.9 8.1 81 248-340 20-102 (206)
400 PRK09016 quinolinate phosphori 93.2 0.53 1.2E-05 44.7 8.8 108 196-329 172-284 (296)
401 COG1954 GlpP Glycerol-3-phosph 93.1 0.33 7.1E-06 42.0 6.6 59 255-324 113-172 (181)
402 TIGR01306 GMP_reduct_2 guanosi 93.1 0.3 6.6E-06 46.9 7.2 67 253-325 96-165 (321)
403 PRK07114 keto-hydroxyglutarate 93.1 1.8 4E-05 39.4 11.9 44 286-330 147-193 (222)
404 PF04309 G3P_antiterm: Glycero 93.0 0.069 1.5E-06 46.7 2.4 64 254-328 108-172 (175)
405 PRK06096 molybdenum transport 93.0 0.6 1.3E-05 44.2 8.9 111 196-330 150-269 (284)
406 cd00381 IMPDH IMPDH: The catal 93.0 0.34 7.4E-06 46.8 7.5 66 252-324 95-162 (325)
407 cd02922 FCB2_FMN Flavocytochro 92.9 1.4 3E-05 43.0 11.5 76 249-325 130-241 (344)
408 COG0434 SgcQ Predicted TIM-bar 92.8 0.66 1.4E-05 42.3 8.4 137 164-328 98-235 (263)
409 PF00682 HMGL-like: HMGL-like 92.8 0.63 1.4E-05 42.6 8.8 138 164-324 70-212 (237)
410 PTZ00314 inosine-5'-monophosph 92.8 0.4 8.8E-06 49.1 8.1 66 252-324 242-309 (495)
411 TIGR02660 nifV_homocitr homoci 92.8 0.95 2.1E-05 44.5 10.4 133 167-323 78-215 (365)
412 cd03332 LMO_FMN L-Lactate 2-mo 92.8 1.5 3.3E-05 43.3 11.7 41 284-325 241-281 (383)
413 PLN02925 4-hydroxy-3-methylbut 92.8 4.4 9.5E-05 42.7 15.3 209 17-269 81-303 (733)
414 PRK06843 inosine 5-monophospha 92.7 0.39 8.5E-06 47.6 7.6 67 252-325 154-222 (404)
415 PRK14040 oxaloacetate decarbox 92.7 1.6 3.6E-05 45.6 12.5 133 159-334 98-243 (593)
416 PRK14042 pyruvate carboxylase 92.7 1.4 3E-05 46.1 11.8 135 158-334 96-242 (596)
417 PRK12331 oxaloacetate decarbox 92.6 1.2 2.7E-05 44.9 11.2 137 159-334 97-242 (448)
418 PF01081 Aldolase: KDPG and KH 92.6 1.1 2.3E-05 40.2 9.5 45 285-330 136-181 (196)
419 PF04476 DUF556: Protein of un 92.6 2 4.4E-05 39.2 11.3 129 164-326 10-152 (235)
420 PRK08385 nicotinate-nucleotide 92.6 0.81 1.7E-05 43.2 9.1 110 196-329 147-263 (278)
421 TIGR03586 PseI pseudaminic aci 92.5 2.3 5.1E-05 41.1 12.5 131 165-323 21-166 (327)
422 PRK14041 oxaloacetate decarbox 92.5 1.5 3.2E-05 44.5 11.5 137 158-334 95-241 (467)
423 PLN02417 dihydrodipicolinate s 92.4 1.3 2.9E-05 41.7 10.6 120 163-315 24-151 (280)
424 PRK09722 allulose-6-phosphate 92.4 3.1 6.6E-05 38.2 12.5 118 171-334 79-208 (229)
425 cd07944 DRE_TIM_HOA_like 4-hyd 92.3 2.8 6E-05 39.3 12.5 114 87-275 106-220 (266)
426 PRK06106 nicotinate-nucleotide 92.3 1.1 2.4E-05 42.3 9.6 106 196-329 157-270 (281)
427 cd08210 RLP_RrRLP Ribulose bis 92.2 1.5 3.2E-05 43.1 10.9 86 161-272 141-227 (364)
428 PRK07896 nicotinate-nucleotide 92.2 1.2 2.7E-05 42.2 9.9 110 196-329 163-278 (289)
429 PRK05096 guanosine 5'-monophos 92.2 0.45 9.8E-06 45.8 7.0 65 253-323 110-177 (346)
430 PRK07114 keto-hydroxyglutarate 92.2 0.71 1.5E-05 42.1 8.0 81 248-340 25-110 (222)
431 PRK11858 aksA trans-homoaconit 92.1 1.6 3.4E-05 43.2 11.0 132 167-322 81-217 (378)
432 PRK07807 inosine 5-monophospha 92.1 0.43 9.2E-06 48.6 7.2 68 252-325 228-296 (479)
433 cd07938 DRE_TIM_HMGL 3-hydroxy 92.1 1.8 3.8E-05 40.8 10.9 138 165-323 77-223 (274)
434 cd07939 DRE_TIM_NifV Streptomy 92.0 1.7 3.6E-05 40.5 10.7 141 167-332 75-225 (259)
435 PRK08195 4-hyroxy-2-oxovalerat 92.0 3.1 6.8E-05 40.4 12.8 110 90-274 115-225 (337)
436 PRK13305 sgbH 3-keto-L-gulonat 92.0 0.26 5.7E-06 44.8 5.0 51 287-338 152-204 (218)
437 cd07945 DRE_TIM_CMS Leptospira 91.9 1.6 3.5E-05 41.3 10.4 138 165-323 78-221 (280)
438 PRK08673 3-deoxy-7-phosphohept 91.8 13 0.00029 36.0 20.1 86 229-325 202-297 (335)
439 PRK00694 4-hydroxy-3-methylbut 91.8 6.5 0.00014 40.6 14.9 211 15-269 14-238 (606)
440 TIGR01302 IMP_dehydrog inosine 91.7 0.55 1.2E-05 47.5 7.5 68 252-325 225-293 (450)
441 cd06557 KPHMT-like Ketopantoat 91.6 7.5 0.00016 36.2 14.2 166 164-364 22-221 (254)
442 PF03102 NeuB: NeuB family; I 91.6 0.81 1.8E-05 42.3 7.8 131 168-324 3-146 (241)
443 PRK06015 keto-hydroxyglutarate 91.5 6.9 0.00015 35.1 13.4 124 161-340 16-140 (201)
444 PLN02979 glycolate oxidase 91.5 2.7 5.9E-05 41.1 11.5 41 284-325 211-251 (366)
445 PRK09282 pyruvate carboxylase 91.4 1.6 3.5E-05 45.7 10.7 139 159-336 97-244 (592)
446 COG0413 PanB Ketopantoate hydr 91.4 2.3 5E-05 39.3 10.3 78 248-341 159-236 (268)
447 PLN02716 nicotinate-nucleotide 91.3 3.4 7.5E-05 39.5 11.8 123 196-329 163-294 (308)
448 PRK00311 panB 3-methyl-2-oxobu 91.3 4.6 9.9E-05 37.9 12.5 165 164-363 25-223 (264)
449 PRK05692 hydroxymethylglutaryl 91.2 2.1 4.6E-05 40.6 10.5 134 168-322 86-228 (287)
450 KOG1606 Stationary phase-induc 91.2 0.42 9.2E-06 42.6 5.2 54 286-340 197-253 (296)
451 PRK05437 isopentenyl pyrophosp 91.1 2.9 6.2E-05 40.9 11.6 102 214-325 107-217 (352)
452 PF01487 DHquinase_I: Type I 3 91.0 1.9 4.2E-05 39.1 9.7 84 162-271 11-96 (224)
453 KOG3111 D-ribulose-5-phosphate 90.9 1.9 4.1E-05 38.1 8.9 132 151-333 71-205 (224)
454 TIGR01232 lacD tagatose 1,6-di 90.9 3.5 7.7E-05 39.4 11.4 149 165-332 110-283 (325)
455 PTZ00170 D-ribulose-5-phosphat 90.9 2 4.4E-05 39.3 9.7 122 162-323 20-143 (228)
456 PRK08227 autoinducer 2 aldolas 90.9 5 0.00011 37.6 12.3 139 86-316 123-261 (264)
457 cd07943 DRE_TIM_HOA 4-hydroxy- 90.8 6.1 0.00013 36.8 13.1 112 89-275 111-222 (263)
458 TIGR02090 LEU1_arch isopropylm 90.8 2 4.3E-05 42.2 10.2 133 167-323 77-214 (363)
459 PRK05458 guanosine 5'-monophos 90.7 0.71 1.5E-05 44.6 6.8 68 252-325 98-168 (326)
460 cd07940 DRE_TIM_IPMS 2-isoprop 90.6 6.4 0.00014 36.8 13.1 115 86-275 110-226 (268)
461 PLN02493 probable peroxisomal 90.6 3.7 8.1E-05 40.3 11.7 41 284-325 212-252 (367)
462 PRK05286 dihydroorotate dehydr 90.6 4.6 9.9E-05 39.4 12.4 152 164-327 72-247 (344)
463 COG1794 RacX Aspartate racemas 90.5 4.4 9.6E-05 36.8 11.1 87 204-300 8-102 (230)
464 TIGR03217 4OH_2_O_val_ald 4-hy 90.4 5.6 0.00012 38.6 12.8 81 161-274 143-224 (333)
465 cd04726 KGPDC_HPS 3-Keto-L-gul 90.3 4.9 0.00011 35.5 11.5 90 214-325 40-133 (202)
466 PF03932 CutC: CutC family; I 90.3 3.1 6.7E-05 37.3 10.0 81 164-269 10-91 (201)
467 cd03174 DRE_TIM_metallolyase D 90.2 2.1 4.7E-05 39.5 9.5 138 164-323 77-220 (265)
468 TIGR03128 RuMP_HxlA 3-hexulose 90.2 4.9 0.00011 35.7 11.5 97 211-327 36-135 (206)
469 cd04737 LOX_like_FMN L-Lactate 90.1 6.2 0.00013 38.6 12.8 48 284-332 209-260 (351)
470 PRK15452 putative protease; Pr 90.1 7.9 0.00017 39.1 13.9 85 164-271 13-97 (443)
471 PRK11572 copper homeostasis pr 89.9 7.9 0.00017 35.9 12.5 81 164-269 11-92 (248)
472 KOG0538 Glycolate oxidase [Ene 89.9 0.97 2.1E-05 42.7 6.6 71 257-330 238-312 (363)
473 PF00834 Ribul_P_3_epim: Ribul 89.8 0.45 9.8E-06 42.7 4.3 115 170-331 76-200 (201)
474 TIGR00259 thylakoid_BtpA membr 89.8 15 0.00033 34.2 14.6 158 154-340 21-196 (257)
475 cd02940 DHPD_FMN Dihydropyrimi 89.8 11 0.00023 36.0 14.1 76 248-324 111-199 (299)
476 cd07941 DRE_TIM_LeuA3 Desulfob 89.7 3.8 8.3E-05 38.5 10.8 148 165-334 82-240 (273)
477 PLN02535 glycolate oxidase 89.6 4.2 9.1E-05 39.9 11.2 41 284-325 211-251 (364)
478 COG2876 AroA 3-deoxy-D-arabino 89.6 14 0.0003 34.5 13.6 144 162-324 60-248 (286)
479 cd07940 DRE_TIM_IPMS 2-isoprop 89.5 6.9 0.00015 36.6 12.3 131 168-322 76-218 (268)
480 PF02548 Pantoate_transf: Keto 89.4 1.2 2.7E-05 41.3 7.0 96 160-304 93-205 (261)
481 cd00958 DhnA Class I fructose- 89.4 8.9 0.00019 34.9 12.8 112 85-271 104-215 (235)
482 TIGR02708 L_lactate_ox L-lacta 89.3 5.4 0.00012 39.2 11.6 48 284-332 216-267 (367)
483 TIGR01303 IMP_DH_rel_1 IMP deh 89.2 0.98 2.1E-05 46.0 6.7 66 252-324 226-293 (475)
484 cd07939 DRE_TIM_NifV Streptomy 89.2 12 0.00027 34.7 13.7 115 85-275 105-219 (259)
485 PLN00191 enolase 89.2 2.1 4.5E-05 43.4 9.0 68 248-324 296-366 (457)
486 COG3010 NanE Putative N-acetyl 89.2 10 0.00022 34.0 12.0 132 164-340 36-178 (229)
487 cd07947 DRE_TIM_Re_CS Clostrid 89.1 9.3 0.0002 36.1 12.8 144 165-323 78-233 (279)
488 PF04481 DUF561: Protein of un 89.1 1.9 4.2E-05 38.8 7.6 64 249-326 26-89 (242)
489 KOG2550 IMP dehydrogenase/GMP 89.0 0.92 2E-05 44.5 6.0 74 250-329 250-326 (503)
490 COG1830 FbaB DhnA-type fructos 89.0 4.3 9.3E-05 37.8 10.1 118 84-275 124-241 (265)
491 KOG0538 Glycolate oxidase [Ene 89.0 3.8 8.3E-05 38.9 9.8 47 285-332 212-262 (363)
492 TIGR02320 PEP_mutase phosphoen 88.9 7.8 0.00017 36.7 12.2 154 164-341 19-204 (285)
493 TIGR01037 pyrD_sub1_fam dihydr 88.9 5.5 0.00012 37.8 11.4 86 229-324 92-188 (300)
494 COG0710 AroD 3-dehydroquinate 88.7 9.4 0.0002 35.0 12.1 86 161-271 14-100 (231)
495 PRK07534 methionine synthase I 88.6 24 0.00053 34.2 15.7 65 29-111 105-178 (336)
496 COG0119 LeuA Isopropylmalate/h 88.6 6 0.00013 39.5 11.6 141 160-323 75-221 (409)
497 PRK12331 oxaloacetate decarbox 88.5 8.5 0.00018 39.0 12.8 157 149-341 21-195 (448)
498 PRK11613 folP dihydropteroate 88.5 4 8.7E-05 38.6 9.8 90 247-340 35-131 (282)
499 TIGR03849 arch_ComA phosphosul 88.4 11 0.00024 34.6 12.3 111 91-271 42-155 (237)
500 PRK12344 putative alpha-isopro 88.4 4.6 9.9E-05 41.8 11.0 135 168-323 92-231 (524)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=100.00 E-value=2e-89 Score=671.07 Aligned_cols=364 Identities=55% Similarity=0.973 Sum_probs=310.8
Q ss_pred ccCCCCCcCCCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCC
Q 017448 6 AAATTTTIPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWT 85 (371)
Q Consensus 6 ~~~~~~~~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~ 85 (371)
++.-...++||+|++||+++|||||+|+||+++.+.+|.||+.+++||++||+|+||||+|++.|++.+..+++++++|+
T Consensus 3 ~~~~~~~~~Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gGGLIIte~~~V~~~g~~~~~~~gi~~ 82 (391)
T PLN02411 3 AAQGNSNETLFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPGGFLISEGTLISPTAPGFPHVPGIYS 82 (391)
T ss_pred cccCCCchhcCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCCCEEEeCceEECcccCcCCCCCccCC
Confidence 33445578999999999999999999999998888789999999999999999449999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCC-----CCC--CCCCCCCCCChHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPG-----LGG--GDWSPPRPLRTEEIPQ 158 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~-----~~g--~~~~~~~~mt~~eI~~ 158 (371)
|+++++||+|+++||++|+++++||+|+||++.+.+...+..+++||.++..+. ..+ .....|++||.+||++
T Consensus 83 d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~ 162 (391)
T PLN02411 83 DEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPE 162 (391)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHH
Confidence 999999999999999999999999999999987654323456778887643210 011 0134689999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
+|++|++||+||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++.|+||||+.+
T Consensus 163 ii~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~ 242 (391)
T PLN02411 163 VVEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAI 242 (391)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999878999999865
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhc------CccEEEEcCCCcccCC--C--CCC---CCchhhHhHHHhcCCCeEeeCCC
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKY------QILYLHILEPRLFNAQ--D--KLD---APPYSLLPMRKAFDGTFIASGGY 305 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~------Gvd~l~v~~~~~~~~~--~--~~~---~~~~~~~~ik~~~~~pVi~~Ggi 305 (371)
++.+....++.++..++++.|++. |||||||+.+.+.... . ... ....+++.||+.+++|||++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i 322 (391)
T PLN02411 243 DHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF 322 (391)
T ss_pred cccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC
Confidence 443322344567788888888874 5999999987542110 0 011 12246688999999999999999
Q ss_pred CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCCCCCCCCcccccCCCCCCccccCCccc
Q 017448 306 NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFLEV 369 (371)
Q Consensus 306 t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 369 (371)
+++.++++|++|.+|+|+|||++|+||||++|+++|++++++++++||++....||+|||+|.+
T Consensus 323 ~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~~~~ 386 (391)
T PLN02411 323 TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPFLSQ 386 (391)
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCccccccc
Confidence 8899999999999999999999999999999999999999999999997323459999998853
No 2
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=100.00 E-value=7.1e-88 Score=654.53 Aligned_cols=350 Identities=42% Similarity=0.723 Sum_probs=307.0
Q ss_pred cCCCCCceeCCeecCCceeeccCCCCCC--CCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhh
Q 017448 13 IPLLTPYKMGPFNLSHRIVLAPLTRNRS--YNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVE 90 (371)
Q Consensus 13 ~~Lf~P~~ig~~~l~NRiv~apm~~~~~--~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~ 90 (371)
.+||+|++||+++|||||+|+||+++.+ .+|.||+.+++||++|| |+||||+|++.|++.+...++++++|++++++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rA-g~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~ 79 (362)
T PRK10605 1 EKLFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRA-SAGLIISEATQISAQAKGYAGAPGLHSPEQIA 79 (362)
T ss_pred CCCCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHh-CCCEEEECceeeCcccccCCCCCcccCHHHHH
Confidence 3699999999999999999999987654 56799999999999999 79999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCC-----CC----CCCCCCCCCChHHHHHHHH
Q 017448 91 AWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGL-----GG----GDWSPPRPLRTEEIPQIVN 161 (371)
Q Consensus 91 ~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~-----~g----~~~~~~~~mt~~eI~~ii~ 161 (371)
+||+++++||++|+++++||+|+||++.....+.+.++++||+++..... .+ .....|++||.+||+++++
T Consensus 80 ~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~ 159 (362)
T PRK10605 80 AWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPGIVN 159 (362)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHHHHH
Confidence 99999999999999999999999999876543234567999998753110 00 0134689999999999999
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
+|++||++|++|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++.|+||||+.+...
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999878999999865332
Q ss_pred cCCCCChHHH-HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEAL-GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~-~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
....+.+.++ ++++++.|++.|+|||||+.+.+.. .......+.+.||+.+++||+++|++|++.++++|++|.||
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~---~~~~~~~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAG---GEPYSDAFREKVRARFHGVIIGAGAYTAEKAETLIGKGLID 316 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccC---CccccHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCC
Confidence 2222345566 7999999999999999999864321 11223456788999999999999999999999999999999
Q ss_pred EEEechHhhhCCcHHHHHHhCCCCCCCCCcccccCCCCCCccccCCc
Q 017448 321 LVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFL 367 (371)
Q Consensus 321 ~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 367 (371)
+|+|||++|+||+|++|+++|+++++++..+||+ .+..||.+||+|
T Consensus 317 ~V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~ 362 (362)
T PRK10605 317 AVAFGRDYIANPDLVARLQRKAELNPQRPESFYG-GGAEGYTDYPTL 362 (362)
T ss_pred EEEECHHhhhCccHHHHHhcCCCCCCCChhhhcC-CCCCCCcCCCCC
Confidence 9999999999999999999999999999999998 456899999975
No 3
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=6.9e-88 Score=649.09 Aligned_cols=350 Identities=38% Similarity=0.632 Sum_probs=306.9
Q ss_pred CCcCCCCCceeCCeecCCceeeccCCCCCC-CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhh
Q 017448 11 TTIPLLTPYKMGPFNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQ 88 (371)
Q Consensus 11 ~~~~Lf~P~~ig~~~l~NRiv~apm~~~~~-~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~ 88 (371)
.+++||+|++||+++|||||||+||+++++ .+|.||+.+++||++||+ |+||||+|.+.|++.++.+++.+++|+|++
T Consensus 2 ~~~~LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~ 81 (363)
T COG1902 2 SMPKLFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQ 81 (363)
T ss_pred CccccCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhH
Confidence 356799999999999999999999999999 789999999999999999 799999999999999999999999999999
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
+++||+++++||++|+++++||+|+||++..... ....+++||+++.... ....|++||.+||+++|++|++||+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~-~~~~~vapS~~~~~~~----~~~~pr~mt~~eI~~ii~~f~~AA~ 156 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHP-WLPSAVAPSAIPAPGG----RRATPRELTEEEIEEVIEDFARAAR 156 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCccccccccc-CCCcccCCCccccccC----CCCCCccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765441 1256799999886531 2467999999999999999999999
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCC
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~ 247 (371)
||++|||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++|||+.+... ..+.
T Consensus 157 rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~--~~g~ 234 (363)
T COG1902 157 RAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD--GGGL 234 (363)
T ss_pred HHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC--CCCC
Confidence 999999999999999999999999999999999999999999999999999999999988 7999999976522 2245
Q ss_pred hHHHHHHHHHHHhhcC-ccEEEEcCCCcccCC---CC-CCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 248 PEALGLYMAKALNKYQ-ILYLHILEPRLFNAQ---DK-LDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 248 ~~e~~~~la~~l~~~G-vd~l~v~~~~~~~~~---~~-~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
+.+++.++++.|++.| +||||++++...... .. +..+..++..+|+.+++|||++|++ +++.|+++|++|.+|+
T Consensus 235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDl 314 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADL 314 (363)
T ss_pred CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCE
Confidence 6888999999999999 799999998764211 01 2334466778999999999999998 8999999999999999
Q ss_pred EEechHhhhCCcHHHHHHhCCCCCCCCCcccccCCCCCCccccCCccc
Q 017448 322 VAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFLEV 369 (371)
Q Consensus 322 V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 369 (371)
|+|||++|+||+|++|+++|++. -++..++.+..-.||.+++....
T Consensus 315 Va~gR~~ladP~~~~k~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~ 360 (363)
T COG1902 315 VAMGRPFLADPDLVLKAAEGREL--EIRPCIYCNQYCLGYTDYPLLKE 360 (363)
T ss_pred EEechhhhcCccHHHHHHcCCCc--cccccccccchhhhccccccchh
Confidence 99999999999999999999986 23333333345678888887643
No 4
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=1.4e-83 Score=619.65 Aligned_cols=333 Identities=53% Similarity=0.904 Sum_probs=297.4
Q ss_pred CCCCCceeCCeecCCceeeccCCCCCC-CCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhch
Q 017448 14 PLLTPYKMGPFNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAW 92 (371)
Q Consensus 14 ~Lf~P~~ig~~~l~NRiv~apm~~~~~-~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
+||+|++||+++|||||+|+||+.+.+ .+|.||+.+++||++||+| ||||+|++.|++.+...++++++|+|+++++|
T Consensus 1 ~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~l 79 (338)
T cd02933 1 KLFSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGW 79 (338)
T ss_pred CCCCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhcC-ceEEeCceeeCccccCCCCCCccCCHHHHHHH
Confidence 599999999999999999999998887 7999999999999999988 99999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCC----CCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 93 KPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPG----LGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 93 ~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~----~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
|+++++||++|+++++||+|+|+++.......+.++++||+++.... ........|++||.+||++++++|++||+
T Consensus 80 r~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 159 (338)
T cd02933 80 KKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGKVPYPTPRALTTEEIPGIVADFRQAAR 159 (338)
T ss_pred HHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccccccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987654212456799998775321 00012346899999999999999999999
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCCh
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNP 248 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~ 248 (371)
+|+++||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++|+++|+||+++.+...+..++.+
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999997789999998764433333457
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.+++.++++.|++.|+|+|+|+.+.+.... ...++.+++.||+.+++||+++|++++++++++|++|.||+|+|||++
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~--~~~~~~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ 317 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVEPRVAGNP--EDQPPDFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPF 317 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCCCCCcc--cccchHHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhh
Confidence 788999999999999999999877543222 345678899999999999999999999999999999999999999999
Q ss_pred hhCCcHHHHHHhCCCCCCCCC
Q 017448 329 LANPDLPKRFELNAALNKYDR 349 (371)
Q Consensus 329 ladP~l~~k~~~g~~~~~~~~ 349 (371)
++||||++|+++|++++.+|+
T Consensus 318 ladP~~~~k~~~g~~~~~~~~ 338 (338)
T cd02933 318 IANPDLVERLKNGAPLNEYDR 338 (338)
T ss_pred hhCcCHHHHHhcCCCCCCCCC
Confidence 999999999999999998874
No 5
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=100.00 E-value=8.5e-84 Score=623.69 Aligned_cols=327 Identities=37% Similarity=0.637 Sum_probs=267.0
Q ss_pred CCCCCceeCCeecCCceeeccCCCCCC-CCC-CCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhh
Q 017448 14 PLLTPYKMGPFNLSHRIVLAPLTRNRS-YNN-IPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVE 90 (371)
Q Consensus 14 ~Lf~P~~ig~~~l~NRiv~apm~~~~~-~~g-~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~ 90 (371)
+||+|++||+++|||||||+||+++++ .+| .|++.+++||++||+ |+||||+|++.|++.+..+++++++|+|++++
T Consensus 1 ~LF~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~ 80 (341)
T PF00724_consen 1 KLFSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIP 80 (341)
T ss_dssp GGGS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHH
T ss_pred CCCCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHH
Confidence 599999999999999999999999888 777 666799999999998 89999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017448 91 AWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNA 170 (371)
Q Consensus 91 ~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a 170 (371)
+||+++++||++|+++++||+|+||++.+... ...+++||+....+.........+++||.+||+++|++|++||++|
T Consensus 81 ~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~--~~~~~~psa~~~~~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A 158 (341)
T PF00724_consen 81 GLKKLADAVHAHGAKIIAQLWHAGRQANPEYS--GDPPVGPSAPSALPSPIKFMGYPPREMTEEEIEEIIEDFAQAARRA 158 (341)
T ss_dssp HHHHHHHHHHHTTSEEEEEEE--GGGSSGCCS--GGGCEESSCSSSSSTTTTETSCEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccceeeccccccccCcccC--CCCccCcccccccCcccccCCCCCeeCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986652 3333667743322110000122458999999999999999999999
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPE 249 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~ 249 (371)
++|||||||||+|||||++|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||||+.+...+ +.+.
T Consensus 159 ~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~---g~~~ 235 (341)
T PF00724_consen 159 KEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEG---GITL 235 (341)
T ss_dssp HHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTT---SHHS
T ss_pred HHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCC---CCch
Confidence 9999999999999999999999999999999999999999999999999999999988 79999999765432 3456
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCccc--------CCC-CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFN--------AQD-KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~--------~~~-~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
+++.++++.+++.|+|+++++...+.. +.. ....+..+++.+|+.+++|||++|++ +++.|+++|++|.|
T Consensus 236 ~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~ 315 (341)
T PF00724_consen 236 EETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKA 315 (341)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCc
Confidence 677889999999999998876543211 110 11223456788999999999999999 67889999999999
Q ss_pred cEEEechHhhhCCcHHHHHHhCCCCC
Q 017448 320 DLVAYGRSFLANPDLPKRFELNAALN 345 (371)
Q Consensus 320 D~V~~gR~~ladP~l~~k~~~g~~~~ 345 (371)
|+|+|||++|+||||++|+++|++.+
T Consensus 316 DlV~~gR~~ladPd~~~k~~~g~~de 341 (341)
T PF00724_consen 316 DLVAMGRPLLADPDLPNKAREGREDE 341 (341)
T ss_dssp SEEEESHHHHH-TTHHHHHHHTTGGC
T ss_pred eEeeccHHHHhCchHHHHHHcCCccC
Confidence 99999999999999999999999754
No 6
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.3e-81 Score=606.02 Aligned_cols=329 Identities=29% Similarity=0.450 Sum_probs=286.5
Q ss_pred CCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCC-CCCCCCCChhhhhch
Q 017448 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGY-QNTPGIWTEEQVEAW 92 (371)
Q Consensus 15 Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~-~~~~~~~~~~~~~~~ 92 (371)
||+|++||+++|||||+|+||++..+.+|.||+.+++||++||+ |+||||+|++.|++.+... ++++++|+|+++++|
T Consensus 1 Lf~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~ 80 (361)
T cd04747 1 LFTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGW 80 (361)
T ss_pred CCCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHH
Confidence 89999999999999999999988777789999999999999998 8999999999998665443 678899999999999
Q ss_pred HHHHHHHHHcCCeeEEccccCCccccCCCC-CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 017448 93 KPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ-PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAI 171 (371)
Q Consensus 93 ~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~-~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~ 171 (371)
|+++++||++|+++++||+|+||++..... ..+.++++||+++... ...|++||.+||++++++|++||++|+
T Consensus 81 ~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~------~~~p~~mt~~eI~~ii~~f~~AA~~a~ 154 (361)
T cd04747 81 KKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPG------KPVGREMTEADIDDVIAAFARAAADAR 154 (361)
T ss_pred HHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCC------CCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998864321 1234578999886431 346899999999999999999999999
Q ss_pred HcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcC--CCCCh
Q 017448 172 KAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEA--QDSNP 248 (371)
Q Consensus 172 ~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~--~~~~~ 248 (371)
+|||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+||||+++. .+. .++.+
T Consensus 155 ~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~-~~~~~~~g~~ 233 (361)
T cd04747 155 RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ-QDYTARLADT 233 (361)
T ss_pred HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc-cccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999988 89999997532 111 12356
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-------------------CHHH
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-------------------NRDD 309 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-------------------t~~~ 309 (371)
.+++.++++.|++.|+||||++.+.+..+. ........++.+|+.+++||+++|++ |+++
T Consensus 234 ~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~-~~~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 312 (361)
T cd04747 234 PDELEALLAPLVDAGVDIFHCSTRRFWEPE-FEGSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDR 312 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCccCCC-cCccchhHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHH
Confidence 778999999999999999999887543222 12224567788999999999999997 7899
Q ss_pred HHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC--CCCCCCcc
Q 017448 310 GNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA--LNKYDRST 351 (371)
Q Consensus 310 a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~--~~~~~~~~ 351 (371)
++++|++|.||+|++||++|+||+|++|+++|+. +.+||++.
T Consensus 313 a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~Ir~~~~~~ 356 (361)
T cd04747 313 LLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDELIPFSRAA 356 (361)
T ss_pred HHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccccCCCHHH
Confidence 9999999999999999999999999999999975 66777543
No 7
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=3.2e-81 Score=605.13 Aligned_cols=325 Identities=26% Similarity=0.411 Sum_probs=289.8
Q ss_pred CCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 15 Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
||+|++||+++|||||+|+||+++++.+|.||+.+++||++||+ |+||||+|+++|++.+..+++++++|+|+++++||
T Consensus 1 Lf~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 80 (343)
T cd04734 1 LLSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFR 80 (343)
T ss_pred CCCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHH
Confidence 89999999999999999999998777789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHc
Q 017448 94 PIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKA 173 (371)
Q Consensus 94 ~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 173 (371)
+|+++||++|+++++||+|+||++.... .+.++++||+++... ....|++||.+||++++++|++||++|+++
T Consensus 81 ~l~~~vh~~g~~~~~Ql~H~G~~~~~~~--~~~~~~~ps~~~~~~-----~~~~~~~mt~~eI~~ii~~f~~AA~ra~~a 153 (343)
T cd04734 81 RLAEAVHAHGAVIMIQLTHLGRRGDGDG--SWLPPLAPSAVPEPR-----HRAVPKAMEEEDIEEIIAAFADAARRCQAG 153 (343)
T ss_pred HHHHHHHhcCCeEEEeccCCCcCcCccc--CCCcccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999986433 345679999876532 134689999999999999999999999999
Q ss_pred CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHH
Q 017448 174 GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 174 G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++||++.+... ++.+.+++
T Consensus 154 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~---~G~~~~e~ 230 (343)
T cd04734 154 GLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE---GGLSPDEA 230 (343)
T ss_pred CCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 7999999865432 23457788
Q ss_pred HHHHHHHhhcC-ccEEEEcCCCcccC----------CCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 253 LYMAKALNKYQ-ILYLHILEPRLFNA----------QDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 253 ~~la~~l~~~G-vd~l~v~~~~~~~~----------~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
+++++.|+++| +|+|+|+.+.+... ..+...++.+++.+|+.+++||+++|++ ++++++++|++|.||
T Consensus 231 ~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D 310 (343)
T cd04734 231 LEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHAD 310 (343)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCC
Confidence 99999999998 99999988765432 0022234567788999999999999999 999999999999999
Q ss_pred EEEechHhhhCCcHHHHHHhCCC--CCCCCC
Q 017448 321 LVAYGRSFLANPDLPKRFELNAA--LNKYDR 349 (371)
Q Consensus 321 ~V~~gR~~ladP~l~~k~~~g~~--~~~~~~ 349 (371)
+|++||++++||||++|+++|+. +.+|..
T Consensus 311 ~V~~gR~~ladP~l~~k~~~g~~~~i~~C~~ 341 (343)
T cd04734 311 MVGMTRAHIADPHLVAKAREGREDDIRPCIG 341 (343)
T ss_pred eeeecHHhHhCccHHHHHHcCCccCcCcCcC
Confidence 99999999999999999999985 444543
No 8
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=3.4e-81 Score=601.86 Aligned_cols=319 Identities=27% Similarity=0.376 Sum_probs=285.8
Q ss_pred cCCCCCceeCCeecCCceeeccCCCCCC--CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhh
Q 017448 13 IPLLTPYKMGPFNLSHRIVLAPLTRNRS--YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQV 89 (371)
Q Consensus 13 ~~Lf~P~~ig~~~l~NRiv~apm~~~~~--~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~ 89 (371)
.+||+|++||+++|||||+|+||+++.+ .+|.|++.+++||++||+ |+||||+|++.|++.+..+++++++++|+++
T Consensus 1 ~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i 80 (337)
T PRK13523 1 SKLFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHI 80 (337)
T ss_pred CCCCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHH
Confidence 3699999999999999999999988766 589999999999999998 8999999999999999999999999999999
Q ss_pred hchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 017448 90 EAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRN 169 (371)
Q Consensus 90 ~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~ 169 (371)
++||+++++||++|+++++||+|+|+++.. ...+++||+++... ....|++||.+||++++++|++||++
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~-----~~~~~~ps~~~~~~-----~~~~p~~mt~eeI~~ii~~f~~aA~~ 150 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRKAEL-----EGDIVAPSAIPFDE-----KSKTPVEMTKEQIKETVLAFKQAAVR 150 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCC-----CCCccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998742 12468999887542 13568999999999999999999999
Q ss_pred HHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChH
Q 017448 170 AIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPE 249 (371)
Q Consensus 170 a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~ 249 (371)
|+++||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++ +.+|+||||+.+... ++.+.
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~---~G~~~ 226 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHP---GGLTV 226 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCC---CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999 458999999865332 23467
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCcccCC-C-CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFNAQ-D-KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~-~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+++.++++.|++.|+|||+|+.+++.... . ....++.+++.||+.+++||+++|++ |+++++++|++|.||+|+|||
T Consensus 227 ~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR 306 (337)
T PRK13523 227 QDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGR 306 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhH
Confidence 88999999999999999999988643211 0 12335677889999999999999999 899999999999999999999
Q ss_pred HhhhCCcHHHHHHhCCCCC
Q 017448 327 SFLANPDLPKRFELNAALN 345 (371)
Q Consensus 327 ~~ladP~l~~k~~~g~~~~ 345 (371)
++++||||++|++++....
T Consensus 307 ~~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 307 ELLRNPYFPRIAAKELGFE 325 (337)
T ss_pred HHHhCccHHHHHHHHcCCC
Confidence 9999999999999997654
No 9
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=8.4e-81 Score=602.65 Aligned_cols=320 Identities=28% Similarity=0.423 Sum_probs=283.3
Q ss_pred CCCCceeC-CeecCCceeeccCCCCCC-CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCC---CCCCCCChhh
Q 017448 15 LLTPYKMG-PFNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQ---NTPGIWTEEQ 88 (371)
Q Consensus 15 Lf~P~~ig-~~~l~NRiv~apm~~~~~-~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~---~~~~~~~~~~ 88 (371)
||+|++|| +++|||||+|+||+++++ .+|.||+.+++||++||+ |+||||+|.++|++.+..++ +++++|+|++
T Consensus 1 Lf~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~ 80 (338)
T cd04733 1 LGQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGED 80 (338)
T ss_pred CCCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHH
Confidence 89999999 599999999999998888 899999999999999998 89999999999999999888 8899999999
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
+++||+|+++||++|+++++||+|+||++.... +..+++||+++..... ......|++||.+||++++++|++||+
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~---~~~~~~ps~~~~~~~~-~~~~~~p~~mt~~eI~~~i~~~~~aA~ 156 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQLNHPGRQSPAGL---NQNPVAPSVALDPGGL-GKLFGKPRAMTEEEIEDVIDRFAHAAR 156 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCcCCCccC---CCCCcCCCCCcCcccc-cccCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986543 2357899887653210 011346899999999999999999999
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCC
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~ 247 (371)
+|+++||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++|++ +|+||+|+.+... .+.
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~---~g~ 233 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR---GGF 233 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC---CCC
Confidence 999999999999999999999999999999999999999999999999999999999988 8999999753222 133
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC----------CCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHc
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDK----------LDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAE 316 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~----------~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~ 316 (371)
+.++++++++.|++.|+|||+|+.+.+..+... ...+...++.||+.+++||+++|++ ++++++++|++
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~ 313 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALAS 313 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHc
Confidence 577899999999999999999998865433211 1112456778999999999999999 89999999999
Q ss_pred CCccEEEechHhhhCCcHHHHHHhC
Q 017448 317 NYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 317 g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
|.||+|+|||++|+||+|++|+++|
T Consensus 314 g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 314 GAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred CCCCeeeeChHhhhCccHHHHHhcC
Confidence 9999999999999999999999987
No 10
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=4.1e-80 Score=600.27 Aligned_cols=321 Identities=32% Similarity=0.473 Sum_probs=284.7
Q ss_pred CCCCceeCC-eecCCceeeccCCCCCC-CCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhch
Q 017448 15 LLTPYKMGP-FNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAW 92 (371)
Q Consensus 15 Lf~P~~ig~-~~l~NRiv~apm~~~~~-~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
||+|++||+ ++|||||+|+||+++++ .+|.||+.+++||++||+|+||||+|++.|++.+..+++++++|+|+++++|
T Consensus 1 Lf~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 80 (353)
T cd04735 1 LFEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAGGVGMVITGATYVSPSGIGFEGGFSADDDSDIPGL 80 (353)
T ss_pred CCCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhCCCCEEEECceEECcccCcCCCCceecChhhhHHH
Confidence 899999998 99999999999999888 7999999999999999988999999999999999988899999999999999
Q ss_pred HHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 017448 93 KPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIK 172 (371)
Q Consensus 93 ~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~ 172 (371)
|+++++||++|+++++||+|+||++.+... .+.++++||+++... . .+..|++||.+||++++++|++||++|++
T Consensus 81 ~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~-~~~~~~~ps~~~~~~--~--~~~~p~~mt~~eI~~ii~~f~~aA~~a~~ 155 (353)
T cd04735 81 RKLAQAIKSKGAKAILQIFHAGRMANPALV-PGGDVVSPSAIAAFR--P--GAHTPRELTHEEIEDIIDAFGEATRRAIE 155 (353)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCcccc-CCCceecCCCCcccC--C--CCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876542 245679999976321 1 13568999999999999999999999999
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC----Cc-ccEEEEcCccCcCcCCCCC
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIG----AE-RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg----~~-~i~vrl~~~~~~~~~~~~~ 247 (371)
|||||||||+||||||+|||||.+|+|+|+||||+|||+||++|||++||+++| ++ +|++|+|+.+... ++.
T Consensus 156 aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~---~g~ 232 (353)
T cd04735 156 AGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEE---PGI 232 (353)
T ss_pred cCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccC---CCC
Confidence 999999999999999999999999999999999999999999999999999998 56 7999999865332 234
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEE
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAF--DGTFIASGGY-NRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~ 323 (371)
+.+++.++++.|++.|+|||+|+.+.+..... .........+.+++.+ ++||+++|++ |+++++++|++| ||+|+
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g-aD~V~ 311 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETG-ADLVA 311 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CChHH
Confidence 56788999999999999999999876543211 1122345667788887 7899999999 899999999996 99999
Q ss_pred echHhhhCCcHHHHHHhCCCC
Q 017448 324 YGRSFLANPDLPKRFELNAAL 344 (371)
Q Consensus 324 ~gR~~ladP~l~~k~~~g~~~ 344 (371)
+||++++||+|++|+++|++.
T Consensus 312 ~gR~liadPdl~~k~~~G~~~ 332 (353)
T cd04735 312 IGRGLLVDPDWVEKIKEGRED 332 (353)
T ss_pred HhHHHHhCccHHHHHHcCChh
Confidence 999999999999999999864
No 11
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=6.5e-79 Score=596.59 Aligned_cols=331 Identities=28% Similarity=0.398 Sum_probs=283.0
Q ss_pred CCCCceeCCeecCCceeeccCCC-CCC-CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCC--CC--CCCCCChh
Q 017448 15 LLTPYKMGPFNLSHRIVLAPLTR-NRS-YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGY--QN--TPGIWTEE 87 (371)
Q Consensus 15 Lf~P~~ig~~~l~NRiv~apm~~-~~~-~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~--~~--~~~~~~~~ 87 (371)
||+|++||+++|||||+|+||++ ..+ .+|.||+.+++||++||+ |+||||+|+++|++.+... ++ ++++++++
T Consensus 1 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd02931 1 LFEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTA 80 (382)
T ss_pred CCCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHH
Confidence 89999999999999999999986 454 789999999999999998 8999999999999876432 22 34566778
Q ss_pred hhhchHHHHHHHHHcCCeeEEccccC-CccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017448 88 QVEAWKPIVDAVHEKGGIFFCQIWHC-GRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLA 166 (371)
Q Consensus 88 ~~~~~~~l~~~ih~~g~~~~~QL~h~-G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~a 166 (371)
++++||+++++||++|+++++||+|. ||++.+... .+..+++||+++.... ....|++||.+||+++|++|++|
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~-~~~~~~~ps~~~~~~~----~~~~p~~mt~~eI~~ii~~f~~A 155 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL-GEDKPVAPSPIPNRWL----PEITCRELTTEEVETFVGKFGES 155 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc-CCCCccCCCCCCCCcC----CCCCCCcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999997 999876542 2346799999874310 12468999999999999999999
Q ss_pred HHHHHHcCCCEEeccccc-chHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcC-
Q 017448 167 GRNAIKAGFDGVEIHGAN-GYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEA- 243 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~-gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~- 243 (371)
|++|++|||||||||++| ||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+|||++.+...+.
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccc
Confidence 999999999999999999 99999999999999999999999999999999999999999987 899999975422110
Q ss_pred ----------CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-------CCCCCchhhHhHHHhcCCCeEeeCCC-
Q 017448 244 ----------QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-------KLDAPPYSLLPMRKAFDGTFIASGGY- 305 (371)
Q Consensus 244 ----------~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-------~~~~~~~~~~~ik~~~~~pVi~~Ggi- 305 (371)
..+.+.+++.++++.|+++|+|||+|+.+.+..... +...++.+++.+|+.+++||+++|++
T Consensus 236 ~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~ 315 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRME 315 (382)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCC
Confidence 123467889999999999999999999876432110 12223457788999999999999999
Q ss_pred CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC--CCCCCCc
Q 017448 306 NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA--LNKYDRS 350 (371)
Q Consensus 306 t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~--~~~~~~~ 350 (371)
++++++++|++|.||+|+|||++++||||++|+++|+. +.+|..+
T Consensus 316 ~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~C 362 (382)
T cd02931 316 DPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRFKNIRPCISC 362 (382)
T ss_pred CHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCcccCcCChhh
Confidence 89999999999999999999999999999999999984 5555544
No 12
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=8.9e-79 Score=593.27 Aligned_cols=336 Identities=21% Similarity=0.309 Sum_probs=286.4
Q ss_pred CCcCCCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCC-CCCCCChhh
Q 017448 11 TTIPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQN-TPGIWTEEQ 88 (371)
Q Consensus 11 ~~~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~-~~~~~~~~~ 88 (371)
.+++||+|++||+++|||||+|+||++..+.. . +..+..||++||+ |+||||+|.++|++.+...++ ++++|+|++
T Consensus 4 ~~~~Lf~P~~ig~~~lkNRiv~apm~~~~~~~-~-~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~ 81 (370)
T cd02929 4 RHDILFEPIKIGPVTARNRFYQVPHCNGMGYR-K-PSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGD 81 (370)
T ss_pred cccccCCCccCCCEEeccceEECCcccCcCCC-C-hHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHH
Confidence 36889999999999999999999998765422 1 3346689999998 899999999999999988877 799999999
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
+++||+++++||++|+++++||+|+||++.... .+..+++||+++.... ......|++||.+||++++++|++||+
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~--~~~~~~~ps~~~~~~~--~~~~~~p~~mt~~eI~~ii~~f~~AA~ 157 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELWHGGAHAPNRE--SRETPLGPSQLPSEFP--TGGPVQAREMDKDDIKRVRRWYVDAAL 157 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecccCCCCCCccC--CCCCccCCCCCCCCcc--ccCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886432 2446789998764310 001346899999999999999999999
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCC
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~ 247 (371)
+|+++||||||||+||||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|++||++.+...+. +..
T Consensus 158 ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~-g~~ 236 (370)
T cd02929 158 RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPG-GIE 236 (370)
T ss_pred HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCC-CCC
Confidence 999999999999999999999999999999999999999999999999999999999987 899999986543321 124
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCC-----CCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQ-----DKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-----~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
+.++++++++.|++. +|+++++.+.+.... .+...++.+++.+|+.+++||+++|++ ++++++++|++|.||+
T Consensus 237 ~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~ 315 (370)
T cd02929 237 SEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDL 315 (370)
T ss_pred CHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCe
Confidence 678889999999876 899999887543211 022334567788999999999999999 8999999999999999
Q ss_pred EEechHhhhCCcHHHHHHhCC--CCCCCCCccccc
Q 017448 322 VAYGRSFLANPDLPKRFELNA--ALNKYDRSTFYT 354 (371)
Q Consensus 322 V~~gR~~ladP~l~~k~~~g~--~~~~~~~~~~~~ 354 (371)
|+|||++|+||||++|+++|+ ++.+|..+..|.
T Consensus 316 V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~ 350 (370)
T cd02929 316 IGAARPSIADPFLPKKIREGRIDDIRECIGCNICI 350 (370)
T ss_pred eeechHhhhCchHHHHHHcCCccccccCCchhhhh
Confidence 999999999999999999997 466677666665
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=1.1e-78 Score=590.94 Aligned_cols=324 Identities=28% Similarity=0.372 Sum_probs=284.9
Q ss_pred CCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 15 Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
||+|++||+++|||||+|+||+..++.+|.||+.+++||++||+ |+||||+|+++|++.+..+++++++|+|+++++||
T Consensus 1 lf~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~ 80 (353)
T cd02930 1 LLSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHR 80 (353)
T ss_pred CCCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHH
Confidence 89999999999999999999987666568899999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHc
Q 017448 94 PIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKA 173 (371)
Q Consensus 94 ~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 173 (371)
+++++||++|+++++||+|+|+++.. ..+++||+++... ....|++||.+||++++++|++||++|+++
T Consensus 81 ~l~~~vh~~g~~~~~QL~h~G~~~~~------~~~~~ps~~~~~~-----~~~~p~~mt~~eI~~i~~~f~~aA~~a~~a 149 (353)
T cd02930 81 LITDAVHAEGGKIALQILHAGRYAYH------PLCVAPSAIRAPI-----NPFTPRELSEEEIEQTIEDFARCAALAREA 149 (353)
T ss_pred HHHHHHHHcCCEEEeeccCCCCCCCC------CCCcCCCCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998753 2468898876431 134689999999999999999999999999
Q ss_pred CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHH
Q 017448 174 GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 174 G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
||||||||++|||||+|||||.+|+|||+||||+|||+||++|||++||+++|++ +|+|||+..+... ++.+.+++
T Consensus 150 GfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~---~g~~~~e~ 226 (353)
T cd02930 150 GYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE---GGSTWEEV 226 (353)
T ss_pred CCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999987 7999999854332 23467889
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCC------CCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQ------DKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~------~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
+++++.|+++|+|||+|+.+...... .+...+...++.||+.+++||+++|++ ++++++++|++|.+|+|++|
T Consensus 227 ~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 227 VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMA 306 (353)
T ss_pred HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhh
Confidence 99999999999999999765432111 011123455788999999999999999 99999999999999999999
Q ss_pred hHhhhCCcHHHHHHhCCC--CCCCCCccc
Q 017448 326 RSFLANPDLPKRFELNAA--LNKYDRSTF 352 (371)
Q Consensus 326 R~~ladP~l~~k~~~g~~--~~~~~~~~~ 352 (371)
|++++||||++|+++|+. +.+|..+..
T Consensus 307 R~~l~dP~~~~k~~~g~~~~i~~Ci~cn~ 335 (353)
T cd02930 307 RPFLADPDFVAKAAAGRADEINTCIACNQ 335 (353)
T ss_pred HHHHHCccHHHHHHhCCcccCcCchhhHH
Confidence 999999999999999984 455655543
No 14
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=100.00 E-value=2.6e-77 Score=578.05 Aligned_cols=318 Identities=31% Similarity=0.454 Sum_probs=283.2
Q ss_pred CCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 15 LLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 15 Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
||+|++||+++|||||+|+||+++.+.+|.||+.+++||++||+ |+||||+|++.|++.+..+++++++|+|+++++||
T Consensus 1 Lf~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~ 80 (336)
T cd02932 1 LFTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALK 80 (336)
T ss_pred CCCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHH
Confidence 89999999999999999999988766789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccccCCCC-----------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 94 PIVDAVHEKGGIFFCQIWHCGRVSTYGFQ-----------PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 94 ~l~~~ih~~g~~~~~QL~h~G~~~~~~~~-----------~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
+++++||++|+++++||+|+||++..... ..+..+++||.++... ....|++||.+||++++++
T Consensus 81 ~l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~-----~~~~p~~mt~~eI~~ii~~ 155 (336)
T cd02932 81 RIVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDE-----GWPTPRELTREEIAEVVDA 155 (336)
T ss_pred HHHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCCCCCcCCC-----CCCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999875431 0123578999876532 2456899999999999999
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
|+++|++|+++||||||||+|||||++|||||.+|+|+|+||||++||+||++|||++||+++|++ +|+||+++.+...
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~ 235 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVE 235 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999987 8999999854222
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC---CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD---KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~---~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
.+.+.+++.++++.|++.|+|||+++.+.+..... ....+...++.||+.+++||+++|++ ++++++++|++|
T Consensus 236 ---~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 236 ---GGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 13357889999999999999999998775432210 12334567788999999999999999 999999999999
Q ss_pred CccEEEechHhhhCCcHHHHHHh
Q 017448 318 YTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 318 ~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
.||+|++||++++||+|++|+++
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 313 RADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred CCCeehhhHHHHhCccHHHHHhh
Confidence 99999999999999999999875
No 15
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.6e-77 Score=575.99 Aligned_cols=316 Identities=38% Similarity=0.587 Sum_probs=285.5
Q ss_pred CCCceeCCeecCCceeeccCCCCCC-CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 16 LTPYKMGPFNLSHRIVLAPLTRNRS-YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 16 f~P~~ig~~~l~NRiv~apm~~~~~-~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
|+|++||+++|||||+|+||++..+ .+|.||+.+++||++||+ |+||||+|+++|++.+..+++++++|+|+++++||
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 8999999999999999999999988 789999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHc
Q 017448 94 PIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKA 173 (371)
Q Consensus 94 ~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~a 173 (371)
+++++||++|+++++||+|+||++.+.. .+..+++||.++... ....|++||.+||++++++|+++|++|+++
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~~~~~~~s~~~~~~-----~~~~~~~mt~~ei~~~i~~~~~aA~~a~~a 153 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNL--TGGPPPAPSAIPSPG-----GGEPPREMTKEEIEQIIEDFAAAARRAKEA 153 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcC--CCCCccCCCCCCCCC-----CCCCCCcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999987665 244578998765431 245789999999999999999999999999
Q ss_pred CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHH
Q 017448 174 GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 174 G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
||||||||++||||++|||||.+|+|+|+||||+|||+||++|+|++||+++|++ +|+||+++.+... +..+.+++
T Consensus 154 GfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~---~g~~~~e~ 230 (327)
T cd02803 154 GFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP---GGLTLEEA 230 (327)
T ss_pred CCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC---CCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 8999999854332 12467889
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCC-------CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQD-------KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~-------~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
.++++.|++.|+|||+++.+....+.. ........++.+|+.+++||+++|++ ++++++++|++|.+|+|++
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 999999999999999999877543321 12334567788999999999999999 7999999999988999999
Q ss_pred chHhhhCCcHHHHHHhC
Q 017448 325 GRSFLANPDLPKRFELN 341 (371)
Q Consensus 325 gR~~ladP~l~~k~~~g 341 (371)
||++++||+|++|+++|
T Consensus 311 gR~~ladP~l~~k~~~g 327 (327)
T cd02803 311 GRALLADPDLPNKAREG 327 (327)
T ss_pred cHHHHhCccHHHHHhcC
Confidence 99999999999999886
No 16
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=3.2e-74 Score=609.40 Aligned_cols=338 Identities=27% Similarity=0.403 Sum_probs=293.9
Q ss_pred CCCCcCCCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChh
Q 017448 9 TTTTIPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEE 87 (371)
Q Consensus 9 ~~~~~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~ 87 (371)
.+..++||+|++||+++|||||+|+||+.+.+.+|.||+.+++||++||+ |+||||+|+++|++.++.+++++++|+|+
T Consensus 393 ~~~~~~Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~ 472 (765)
T PRK08255 393 ARPPPPMFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDE 472 (765)
T ss_pred CCCcccccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHH
Confidence 44578999999999999999999999988766889999999999999998 89999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHc-CCeeEEccccCCccccCCCC---------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHH
Q 017448 88 QVEAWKPIVDAVHEK-GGIFFCQIWHCGRVSTYGFQ---------PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIP 157 (371)
Q Consensus 88 ~~~~~~~l~~~ih~~-g~~~~~QL~h~G~~~~~~~~---------~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~ 157 (371)
++++||+++++||++ |+++++||+|+||++..... ..+.++++||+++... ....|++||.+||+
T Consensus 473 ~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~-----~~~~p~~mt~~eI~ 547 (765)
T PRK08255 473 QEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLP-----GSQVPREMTRADMD 547 (765)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCC-----CCCCCCcCCHHHHH
Confidence 999999999999999 69999999999999864320 0122468999987542 14578999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcC
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSP 236 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~ 236 (371)
+++++|++||++|+++||||||||+||||||+|||||.+|+|||+||||+|||+||++||+++||+++|++ +|+||||+
T Consensus 548 ~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 548 RVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 89999998
Q ss_pred ccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC---CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHH
Q 017448 237 HANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD---KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNK 312 (371)
Q Consensus 237 ~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~---~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~ 312 (371)
.+... ++.+.++++++++.|++.|+|||+|+.+....... +...+..+++.||+.+++||+++|++ +++++++
T Consensus 628 ~~~~~---~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~ 704 (765)
T PRK08255 628 HDWVE---GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNS 704 (765)
T ss_pred ccccC---CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHH
Confidence 54332 23467889999999999999999999765432110 12234567788999999999999999 8999999
Q ss_pred HHHcCCccEEEechHhhhCCcHHHHHHhCCCCCCCCCccccc
Q 017448 313 AVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYT 354 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~ 354 (371)
+|++|.||+|+|||++|+||+|+.+......++..+....|.
T Consensus 705 ~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~~~~~~~~~~ 746 (765)
T PRK08255 705 IIAAGRADLCALARPHLADPAWTLHEAAEIGYRDVAWPKQYL 746 (765)
T ss_pred HHHcCCcceeeEcHHHHhCccHHHHHHHHcCCCCCCCchhhh
Confidence 999999999999999999999999988876665334434444
No 17
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=5.5e-57 Score=427.96 Aligned_cols=355 Identities=40% Similarity=0.638 Sum_probs=279.0
Q ss_pred cCCCCCceeCCeecCCceeeccCCCCCCCCCCC---CHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhh
Q 017448 13 IPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIP---QPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQ 88 (371)
Q Consensus 13 ~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~---~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~ 88 (371)
+.||+|+++|.+.+..|++++||+.+.+....+ ...+..||.+|.. -.++||++...+.+.+-+....+++|.|++
T Consensus 7 ~~~a~~v~~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~ 86 (400)
T KOG0134|consen 7 PELAEPVKMGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQ 86 (400)
T ss_pred cccccccccccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeeccc
Confidence 349999999999999999999999887733223 5556777888875 567888888888888888888888888888
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCC---ccccCCCCCC-----------CCCCcccCCCCCCCCCCCCCCCCCCCCChH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCG---RVSTYGFQPN-----------GEAPISCTSKGVTPGLGGGDWSPPRPLRTE 154 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G---~~~~~~~~~~-----------~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~ 154 (371)
.+.|+..+.++|++++..++||||.| +.+.....+. ...+++.|.+.+.....+..+..|+.||.+
T Consensus 87 ~~~~~~~~~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~~~~~p~~~~a~~v~~~~~~~~~~~~~p~~l~~e 166 (400)
T KOG0134|consen 87 NEEWAGNVIAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTPCTVNPTPWGASDVQLPNAIRGVEFGKPKPLSKE 166 (400)
T ss_pred ccccCCceEEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCccccccccCCCCCCHHhccCcccccchhcCCCCCCCHH
Confidence 88888888888877777777777766 3332111110 112233333322221222234568899999
Q ss_pred HHHH-HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE
Q 017448 155 EIPQ-IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR 233 (371)
Q Consensus 155 eI~~-ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr 233 (371)
+|.+ |+|.|+.||+.+.++||||||||++||||++||+||.+|+|||+||||+|||+||++||+++||+++|+..+++|
T Consensus 167 ~Ik~~V~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~ 246 (400)
T KOG0134|consen 167 QIKTEVVDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLR 246 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEE
Confidence 9987 556677777777799999999999999999999999999999999999999999999999999999998888888
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-------C---CCCCCchhhHhHHHhcCCCeEeeC
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-------D---KLDAPPYSLLPMRKAFDGTFIASG 303 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-------~---~~~~~~~~~~~ik~~~~~pVi~~G 303 (371)
+++..++.+. ..+.|+...+|..+++.|+|++.++.+.+.... . .......+.+.+|+.++.+||..|
T Consensus 247 ~~~~~~fq~~--~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~ 324 (400)
T KOG0134|consen 247 GSPTNEFQDI--GITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAG 324 (400)
T ss_pred ecCchhhhhc--cccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEec
Confidence 8886555543 335667788999999999998877654421110 0 122345677889999999977655
Q ss_pred -CC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCCCCCCCCcccccCCCCCCccccCCccc
Q 017448 304 -GY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAALNKYDRSTFYTPDPVVGYTDYPFLEV 369 (371)
Q Consensus 304 -gi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 369 (371)
+. |++.+.++++.|..|+|++||.+++|||||.|++.|.+++++|++++|++++..||+||+.+++
T Consensus 325 g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~~~~~~~ 392 (400)
T KOG0134|consen 325 GGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYADYPQMEQ 392 (400)
T ss_pred CCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhccccChhHHH
Confidence 34 9999999999999999999999999999999999999999999999999899999999998754
No 18
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=6.5e-33 Score=266.50 Aligned_cols=235 Identities=19% Similarity=0.206 Sum_probs=184.0
Q ss_pred eCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHH
Q 017448 21 MGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVH 100 (371)
Q Consensus 21 ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih 100 (371)
||++.++|++++|||... |+..++...+.. |+++++||++....... ..+.. +++.+ .+
T Consensus 1 ~~~~~~~~~l~lAPm~~~-------t~~~fR~l~~~~-g~~~~~temi~~~~l~~---------~~~~~---~~~~~-~~ 59 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGV-------TDSPFRRLVAEY-GAGLTVCEMVSSEAIVY---------DSQRT---MRLLD-IA 59 (319)
T ss_pred CCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEECCEEEhhhhc---------CCHHH---HHHhh-cC
Confidence 588999999999999874 444433333333 78999999987764311 11111 12221 24
Q ss_pred HcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEec
Q 017448 101 EKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEI 180 (371)
Q Consensus 101 ~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei 180 (371)
..+.++++||.. ..| ++|+++|++++++|||+|||
T Consensus 60 ~~~~p~i~ql~g---------------------------------~~~------------~~~~~aa~~~~~~G~d~Iel 94 (319)
T TIGR00737 60 EDETPISVQLFG---------------------------------SDP------------DTMAEAAKINEELGADIIDI 94 (319)
T ss_pred CccceEEEEEeC---------------------------------CCH------------HHHHHHHHHHHhCCCCEEEE
Confidence 567889999962 122 46899999999999999999
Q ss_pred ccccchHHhhhcCCcccCCCCCCCCc-hhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHH
Q 017448 181 HGANGYLIDQFMKDQVNDRTDQYGGS-LENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKAL 259 (371)
Q Consensus 181 ~~~~gyLl~qFlSp~~N~R~D~yGgs-~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l 259 (371)
|+|| | .|+|+|+|||| +.+|++++.||+++||++++ .||.||++... .....+..++++.|
T Consensus 95 N~gc---------P-~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~g~-------~~~~~~~~~~a~~l 156 (319)
T TIGR00737 95 NMGC---------P-VPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRIGW-------DDAHINAVEAARIA 156 (319)
T ss_pred ECCC---------C-HHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEccc-------CCCcchHHHHHHHH
Confidence 9998 7 79999999998 68999999999999999996 48999998621 11122356899999
Q ss_pred hhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 260 NKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 260 ~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
++.|+|+|++|.++....+ ....++..++.|++.+++||+++|++ ++++++++++.+.||+|++||++++||+|++++
T Consensus 157 ~~~G~d~i~vh~r~~~~~~-~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~ 235 (319)
T TIGR00737 157 EDAGAQAVTLHGRTRAQGY-SGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQI 235 (319)
T ss_pred HHhCCCEEEEEcccccccC-CCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence 9999999999876543333 33456788899999999999999999 999999999877899999999999999999998
Q ss_pred Hh
Q 017448 339 EL 340 (371)
Q Consensus 339 ~~ 340 (371)
++
T Consensus 236 ~~ 237 (319)
T TIGR00737 236 EQ 237 (319)
T ss_pred HH
Confidence 75
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=3e-32 Score=259.56 Aligned_cols=233 Identities=17% Similarity=0.153 Sum_probs=176.5
Q ss_pred ceeeccCCCCCCCCCCCCHHHHHHHHHHccc-CceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHH-----HHHc
Q 017448 29 RIVLAPLTRNRSYNNIPQPHAILYYSQRTTN-GGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDA-----VHEK 102 (371)
Q Consensus 29 Riv~apm~~~~~~~g~~~~~~~~~y~~~a~g-~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----ih~~ 102 (371)
|+++|||.+. |+..++...+.- | +++++||++++..... ..+ .++.+... .+..
T Consensus 2 ~~~lAPMag~-------td~~fR~l~~~~-g~~~~~~temvs~~~~~~---------~~~---~~~~~~~~~~~~~~~~~ 61 (312)
T PRK10550 2 RVLLAPMEGV-------LDSLVRELLTEV-NDYDLCITEFLRVVDQLL---------PVK---VFHRLCPELHNASRTPS 61 (312)
T ss_pred CeEEECCCCC-------cCHHHHHHHHHh-CCCCEEEeCCEEechhcc---------cch---hHHHHhHHhcccCCCCC
Confidence 6899999874 555533333322 5 7999999997763311 111 12222222 2344
Q ss_pred CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEeccc
Q 017448 103 GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHG 182 (371)
Q Consensus 103 g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~ 182 (371)
+.++++||+. ..| ++|++||+++++.|||+||||+
T Consensus 62 e~p~~vQl~g---------------------------------~~p------------~~~~~aA~~~~~~g~d~IdiN~ 96 (312)
T PRK10550 62 GTLVRIQLLG---------------------------------QYP------------QWLAENAARAVELGSWGVDLNC 96 (312)
T ss_pred CCcEEEEecc---------------------------------CCH------------HHHHHHHHHHHHcCCCEEEEeC
Confidence 5789999962 123 4689999999999999999999
Q ss_pred ccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhh
Q 017448 183 ANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNK 261 (371)
Q Consensus 183 ~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~ 261 (371)
||. +|..|+ ..+|.++++|++++.+|+++||++++++ ||+||++.. +. ..+++.++++.+++
T Consensus 97 GCP-------~~~v~~--~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g-------~~-~~~~~~~~a~~l~~ 159 (312)
T PRK10550 97 GCP-------SKTVNG--SGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLG-------WD-SGERKFEIADAVQQ 159 (312)
T ss_pred CCC-------chHHhc--CCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECC-------CC-CchHHHHHHHHHHh
Confidence 992 122221 2233479999999999999999999865 899999972 12 22347899999999
Q ss_pred cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 262 YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 262 ~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
+|+|+|+||.++..+.+..+..+++.++.+|+.+++||++||++ |+++++++++.+.||+||+||++++||+|++++++
T Consensus 160 ~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 160 AGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred cCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 99999999998765544233336788999999999999999999 99999999998999999999999999999999998
Q ss_pred CCC
Q 017448 341 NAA 343 (371)
Q Consensus 341 g~~ 343 (371)
|.+
T Consensus 240 g~~ 242 (312)
T PRK10550 240 NEP 242 (312)
T ss_pred CCC
Confidence 763
No 20
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=8e-32 Score=247.42 Aligned_cols=227 Identities=18% Similarity=0.174 Sum_probs=177.7
Q ss_pred eeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEc
Q 017448 30 IVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQ 109 (371)
Q Consensus 30 iv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~Q 109 (371)
+++|||... |+..++...+.- |+.+++||++.+...-.. .... +.+. ..+..+.++++|
T Consensus 2 ~~~aPm~~~-------~~~~fR~l~~~~-~~~~~~t~~~~~~~~~~~---------~~~~---~~~~-~~~~~~~p~~~q 60 (231)
T cd02801 2 LILAPMVGV-------TDLPFRLLCRRY-GADLVYTEMISAKALLRG---------NRKR---LRLL-TRNPEERPLIVQ 60 (231)
T ss_pred eEeCCCCCC-------cCHHHHHHHHHH-CCCEEEecCEEEhhhhhc---------CHHH---HHhh-ccCccCCCEEEE
Confidence 689999774 444433333322 688999999877643211 1111 1111 225667889999
Q ss_pred cccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHh
Q 017448 110 IWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLID 189 (371)
Q Consensus 110 L~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~ 189 (371)
|.+. .| ++|+++|++++++|||+||||+||
T Consensus 61 i~g~---------------------------------~~------------~~~~~aa~~~~~aG~d~ieln~g~----- 90 (231)
T cd02801 61 LGGS---------------------------------DP------------ETLAEAAKIVEELGADGIDLNMGC----- 90 (231)
T ss_pred EcCC---------------------------------CH------------HHHHHHHHHHHhcCCCEEEEeCCC-----
Confidence 8631 12 578999999999999999999998
Q ss_pred hhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 190 QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 190 qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
|.+|.|+|+|||+++||++++.|++++||++++ .+|.||++.. +... +++.++++.|++.|+|+|++
T Consensus 91 ----p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~-------~~~~-~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 91 ----PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLG-------WDDE-EETLELAKALEDAGASALTV 157 (231)
T ss_pred ----CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeec-------cCCc-hHHHHHHHHHHHhCCCEEEE
Confidence 889999999999999999999999999999997 5788888752 1111 46789999999999999999
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
+.++..... ....++..++.+++.+++||+++|++ ++++++++++.+.+|+|++||++++||+|++++++.
T Consensus 158 ~~~~~~~~~-~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 158 HGRTREQRY-SGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred CCCCHHHcC-CCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 987643322 23446677888999999999999999 899999999997799999999999999999999875
No 21
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.97 E-value=4.9e-30 Score=247.18 Aligned_cols=231 Identities=14% Similarity=0.179 Sum_probs=177.1
Q ss_pred ecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccC-ceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcC
Q 017448 25 NLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNG-GFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKG 103 (371)
Q Consensus 25 ~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~-Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g 103 (371)
.-+|++++|||.+. |+..++...+.- |+ ++++||++.+...-.. . .+++.. .+..+
T Consensus 8 ~~~~~~~lAPM~g~-------td~~fR~~~~~~-g~~~~~~temv~~~~l~~~---------~-----~~~~l~-~~~~e 64 (333)
T PRK11815 8 LPSRRFSVAPMMDW-------TDRHCRYFHRLL-SRHALLYTEMVTTGAIIHG---------D-----RERLLA-FDPEE 64 (333)
T ss_pred CCCCCEEEeCCCCC-------cCHHHHHHHHHh-CCCCEEEECCEEecccccc---------C-----HHHHhc-cCCCC
Confidence 45789999999874 555544333332 55 8999999876632111 1 011111 14556
Q ss_pred CeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccc
Q 017448 104 GIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGA 183 (371)
Q Consensus 104 ~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~ 183 (371)
.++++||+. ..| +.|++||++++++|||+||||+|
T Consensus 65 ~p~~vQl~g---------------------------------~~p------------~~~~~aA~~~~~~g~d~IdlN~g 99 (333)
T PRK11815 65 HPVALQLGG---------------------------------SDP------------ADLAEAAKLAEDWGYDEINLNVG 99 (333)
T ss_pred CcEEEEEeC---------------------------------CCH------------HHHHHHHHHHHhcCCCEEEEcCC
Confidence 789999962 123 46899999999999999999999
Q ss_pred cchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcC
Q 017448 184 NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQ 263 (371)
Q Consensus 184 ~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~G 263 (371)
| |..|.|+|+||+++++|++++.+|++++|++++ .+|.||++... . +.++.+++.++++.++++|
T Consensus 100 C---------P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~pVsvKiR~g~--~---~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 100 C---------PSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IPVTVKHRIGI--D---DQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred C---------CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-CceEEEEEeee--C---CCcCHHHHHHHHHHHHHhC
Confidence 9 999999999999999999999999999999984 48888876521 1 1234566889999999999
Q ss_pred ccEEEEcCCCcc-cCCC------CCCCCchhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcH
Q 017448 264 ILYLHILEPRLF-NAQD------KLDAPPYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDL 334 (371)
Q Consensus 264 vd~l~v~~~~~~-~~~~------~~~~~~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l 334 (371)
+|+|++|.++.. +.+. .++..+..++.+++.+ ++|||++|++ |+++++++++ + ||+|++||+++.||++
T Consensus 165 ~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~-aDgVmIGRa~l~nP~~ 242 (333)
T PRK11815 165 CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H-VDGVMIGRAAYHNPYL 242 (333)
T ss_pred CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c-CCEEEEcHHHHhCCHH
Confidence 999999976531 1110 1224567788899986 8999999999 9999999997 4 9999999999999999
Q ss_pred HHHHHh
Q 017448 335 PKRFEL 340 (371)
Q Consensus 335 ~~k~~~ 340 (371)
++++++
T Consensus 243 ~~~~~~ 248 (333)
T PRK11815 243 LAEVDR 248 (333)
T ss_pred HHHHHH
Confidence 999876
No 22
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.97 E-value=2.5e-29 Score=241.05 Aligned_cols=237 Identities=17% Similarity=0.202 Sum_probs=179.2
Q ss_pred ceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHH
Q 017448 19 YKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDA 98 (371)
Q Consensus 19 ~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (371)
++||+++++|++++|||.+. |+..++...+.. |+|+++||+++.++.. +..+.. ..++.
T Consensus 1 ~~i~~~~~~~~~~lAPM~g~-------td~~fR~l~~~~-g~~~~~temvs~~~~~---------~~~~~~--~~~~~-- 59 (321)
T PRK10415 1 MRIGQYQLRNRLIAAPMAGI-------TDRPFRTLCYEM-GAGLTVSEMMSSNPQV---------WESDKS--RLRMV-- 59 (321)
T ss_pred CccCCccCCCCEEecCCCCC-------CcHHHHHHHHHH-CCCEEEEccEEcchhh---------hcCHhH--HHHhc--
Confidence 36899999999999999774 666544444433 7899999998775431 111100 11111
Q ss_pred HHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEE
Q 017448 99 VHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGV 178 (371)
Q Consensus 99 ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgV 178 (371)
......++++||+. ..| +.|+++|+++++.|||+|
T Consensus 60 ~~~~~~~~~vQl~g---------------------------------~~~------------~~~~~aa~~~~~~g~d~I 94 (321)
T PRK10415 60 HIDEPGIRTVQIAG---------------------------------SDP------------KEMADAARINVESGAQII 94 (321)
T ss_pred cCccCCCEEEEEeC---------------------------------CCH------------HHHHHHHHHHHHCCCCEE
Confidence 01223467788851 123 467999999999999999
Q ss_pred ecccccchHHhhhcCCcccCCCCC-CCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHH
Q 017448 179 EIHGANGYLIDQFMKDQVNDRTDQ-YGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAK 257 (371)
Q Consensus 179 ei~~~~gyLl~qFlSp~~N~R~D~-yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~ 257 (371)
|||+|| |.. +...+ +|..+.++++++.+|+++||++++ .+|++|++.. +....+++.++++
T Consensus 95 dlN~gC---------P~~-~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d-~pv~vKiR~G-------~~~~~~~~~~~a~ 156 (321)
T PRK10415 95 DINMGC---------PAK-KVNRKLAGSALLQYPDLVKSILTEVVNAVD-VPVTLKIRTG-------WAPEHRNCVEIAQ 156 (321)
T ss_pred EEeCCC---------CHH-HHcCCCcccHHhcCHHHHHHHHHHHHHhcC-CceEEEEEcc-------ccCCcchHHHHHH
Confidence 999999 653 33344 455699999999999999999983 3899999852 2223345788999
Q ss_pred HHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHH
Q 017448 258 ALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPK 336 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~ 336 (371)
.++++|+|+|++|.++....+ .+..++..++++++.+++|||++|++ |+++++++++.+.||+|++||+++.||++++
T Consensus 157 ~le~~G~d~i~vh~rt~~~~~-~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~ 235 (321)
T PRK10415 157 LAEDCGIQALTIHGRTRACLF-NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFR 235 (321)
T ss_pred HHHHhCCCEEEEecCcccccc-CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHH
Confidence 999999999999988754444 33456788999999999999999999 9999999999877999999999999999999
Q ss_pred HHHh
Q 017448 337 RFEL 340 (371)
Q Consensus 337 k~~~ 340 (371)
++++
T Consensus 236 ~~~~ 239 (321)
T PRK10415 236 EIQH 239 (321)
T ss_pred HHHH
Confidence 9876
No 23
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.1e-28 Score=236.18 Aligned_cols=238 Identities=20% Similarity=0.188 Sum_probs=190.8
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccC-ceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHH
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNG-GFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIV 96 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~-Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (371)
+.+++.+.++||+++|||.+. |+...++..+.- |+ ++++||++.....-..........+..
T Consensus 1 ~~~~~~~~~~~~~~lAPM~gv-------td~~fR~l~~~~-ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~--------- 63 (323)
T COG0042 1 MLKIGLIELRNRVILAPMAGV-------TDLPFRRLAREL-GAYDLLYTEMVSAKALLHGRKKFLLLLDEL--------- 63 (323)
T ss_pred CCccccccccCcEEEecCCCC-------ccHHHHHHHHHh-CCCceEEEccEEEhhhccCCcchhhhcCcC---------
Confidence 467888999999999999884 666655444443 66 999999998776544322211111100
Q ss_pred HHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCC
Q 017448 97 DAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFD 176 (371)
Q Consensus 97 ~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~D 176 (371)
....++.+||.. ..| +.+++||+.+.+.|+|
T Consensus 64 ----~~e~p~~vQl~g---------------------------------sdp------------~~l~eaA~~~~~~g~~ 94 (323)
T COG0042 64 ----EEERPVAVQLGG---------------------------------SDP------------ELLAEAAKIAEELGAD 94 (323)
T ss_pred ----CCCCCEEEEecC---------------------------------CCH------------HHHHHHHHHHHhcCCC
Confidence 334568999962 123 3569999999999999
Q ss_pred EEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHH
Q 017448 177 GVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMA 256 (371)
Q Consensus 177 gVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la 256 (371)
+|+||+|| |........+|.+|...+.++.++|+++++++++-||+||++.. +++..-.+.+++
T Consensus 95 ~IdlN~GC---------P~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG-------~d~~~~~~~~ia 158 (323)
T COG0042 95 IIDLNCGC---------PSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLG-------WDDDDILALEIA 158 (323)
T ss_pred EEeeeCCC---------ChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecc-------cCcccccHHHHH
Confidence 99999999 87777778888889999999999999999999833899999873 222212467899
Q ss_pred HHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcH
Q 017448 257 KALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDL 334 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l 334 (371)
+.+++.|++.|+||.++..+.+ ..+.+++.++.+|+.++ +|||+||++ +++++.++|+.+.||.||+||+++.||++
T Consensus 159 ~~~~~~g~~~ltVHgRtr~~~y-~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 159 RILEDAGADALTVHGRTRAQGY-LGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWL 237 (323)
T ss_pred HHHHhcCCCEEEEecccHHhcC-CCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcH
Confidence 9999999999999999877776 44578899999999999 999999999 99999999999999999999999999999
Q ss_pred HHHH
Q 017448 335 PKRF 338 (371)
Q Consensus 335 ~~k~ 338 (371)
++++
T Consensus 238 ~~~i 241 (323)
T COG0042 238 FRQI 241 (323)
T ss_pred HHHH
Confidence 9984
No 24
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.96 E-value=4.5e-28 Score=231.39 Aligned_cols=228 Identities=15% Similarity=0.196 Sum_probs=176.0
Q ss_pred CceeeccCCCCCCCCCCCCHHHHHHHHHHcccC-ceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCee
Q 017448 28 HRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNG-GFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIF 106 (371)
Q Consensus 28 NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~-Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~ 106 (371)
+|+++|||.+. |+..++...+.- |+ ++.+||++.+...-.. ... ++.. .+..+.++
T Consensus 1 ~~~~lAPM~g~-------Td~~fR~l~~~~-g~~~~~~TEMv~a~~l~~~---------~~~-----~~l~-~~~~e~p~ 57 (318)
T TIGR00742 1 GRFSVAPMLDW-------TDRHFRYFLRLL-SKHTLLYTEMITAKAIIHG---------DKK-----DILK-FSPEESPV 57 (318)
T ss_pred CCEEEECCCCC-------cCHHHHHHHHHh-CCCCEEEeCCEEEhhhhcc---------CHH-----HHcc-cCCCCCcE
Confidence 68999999885 666533333332 66 8999999977643111 111 1111 23456789
Q ss_pred EEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccch
Q 017448 107 FCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGY 186 (371)
Q Consensus 107 ~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gy 186 (371)
++||+- ..| +.|+++|+++.+.|||+||||+||
T Consensus 58 ~vQl~g---------------------------------~~p------------~~~~~aA~~~~~~g~d~IDlN~GC-- 90 (318)
T TIGR00742 58 ALQLGG---------------------------------SDP------------NDLAKCAKIAEKRGYDEINLNVGC-- 90 (318)
T ss_pred EEEEcc---------------------------------CCH------------HHHHHHHHHHHhCCCCEEEEECCC--
Confidence 999962 123 468999999999999999999999
Q ss_pred HHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccE
Q 017448 187 LIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILY 266 (371)
Q Consensus 187 Ll~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~ 266 (371)
|..+.+++.||++|.++++++.+||+++|++++ .||+||++... . ..++.+++.++++.++++|++.
T Consensus 91 -------P~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~-~PVsvKiR~g~--~---~~~~~~~~~~~~~~l~~~G~~~ 157 (318)
T TIGR00742 91 -------PSDRVQNGNFGACLMGNADLVADCVKAMQEAVN-IPVTVKHRIGI--D---PLDSYEFLCDFVEIVSGKGCQN 157 (318)
T ss_pred -------CHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC-CCeEEEEecCC--C---CcchHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999985 38999998731 1 1224567889999999999999
Q ss_pred EEEcCCCc-ccCCCC------CCCCchhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHH
Q 017448 267 LHILEPRL-FNAQDK------LDAPPYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 267 l~v~~~~~-~~~~~~------~~~~~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
|.||.++. .+.+.+ ++.++..+..+++.+ ++|||+||++ |++++.++++ | ||+||+||+++.||+++.+
T Consensus 158 itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g-~dgVMigRgal~nP~if~~ 235 (318)
T TIGR00742 158 FIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-H-VDGVMVGREAYENPYLLAN 235 (318)
T ss_pred EEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-C-CCEEEECHHHHhCCHHHHH
Confidence 99999874 221201 122456778899988 7999999999 9999999996 5 9999999999999999998
Q ss_pred HHh
Q 017448 338 FEL 340 (371)
Q Consensus 338 ~~~ 340 (371)
+.+
T Consensus 236 ~~~ 238 (318)
T TIGR00742 236 VDR 238 (318)
T ss_pred HHH
Confidence 876
No 25
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.95 E-value=5.4e-27 Score=223.73 Aligned_cols=245 Identities=16% Similarity=0.115 Sum_probs=182.2
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCC-C----------CCCCCCCCCC
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTA-Q----------GYQNTPGIWT 85 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~-~----------~~~~~~~~~~ 85 (371)
+.+++|++++|+|++||+... -++..++. .+. |+|+|+++.+...+.. . ...+..++.+
T Consensus 2 ~~~~~g~~l~npi~~aag~~~------~~~~~~~~---~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~ 72 (300)
T TIGR01037 2 EVELFGIRFKNPLILASGIMG------SGVESLRR---IDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQN 72 (300)
T ss_pred cEEECCEECCCCCEeCCcCCC------CCHHHHHH---HHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCC
Confidence 468899999999999996321 15555443 333 8999999988776542 1 1122345555
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRL 165 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 165 (371)
+..-..++.+.+..|+.+.++++||+- .. .++|++
T Consensus 73 ~g~~~~~~~~~~~~~~~~~pl~~qi~g---------------------------------~~------------~~~~~~ 107 (300)
T TIGR01037 73 PGVEAFLEELKPVREEFPTPLIASVYG---------------------------------SS------------VEEFAE 107 (300)
T ss_pred cCHHHHHHHHHHHhccCCCcEEEEeec---------------------------------CC------------HHHHHH
Confidence 444455667777777788899999951 01 146788
Q ss_pred HHHHHHHcC--CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 166 AGRNAIKAG--FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 166 aA~~a~~aG--~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+|+.+.+++ +|+||||++| |.+|. +|.++.++.+++.|++++||++++ .||+||+++.
T Consensus 108 ~a~~~~~~~~~~d~ielN~~c---------P~~~~----~g~~l~~~~~~~~eiv~~vr~~~~-~pv~vKi~~~------ 167 (300)
T TIGR01037 108 VAEKLEKAPPYVDAYELNLSC---------PHVKG----GGIAIGQDPELSADVVKAVKDKTD-VPVFAKLSPN------ 167 (300)
T ss_pred HHHHHHhccCccCEEEEECCC---------CCCCC----CccccccCHHHHHHHHHHHHHhcC-CCEEEECCCC------
Confidence 898888874 9999999999 77765 455555667899999999999983 4899999862
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC---C---------C---CCCCC----chhhHhHHHhcCCCeEeeCC
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNA---Q---------D---KLDAP----PYSLLPMRKAFDGTFIASGG 304 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~---~---------~---~~~~~----~~~~~~ik~~~~~pVi~~Gg 304 (371)
.++..++++.++++|+|+|+++.+..... . . .++.. ...+.++++.+++|||++|+
T Consensus 168 -----~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GG 242 (300)
T TIGR01037 168 -----VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG 242 (300)
T ss_pred -----hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECC
Confidence 23567899999999999999975321100 0 0 01111 24567788989999999999
Q ss_pred C-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCC
Q 017448 305 Y-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNA 342 (371)
Q Consensus 305 i-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 342 (371)
+ +++++.++|+.| ||+|++||+++.||+|+++++++.
T Consensus 243 I~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 243 ITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred CCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence 9 999999999988 999999999999999999999874
No 26
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=3.6e-26 Score=217.70 Aligned_cols=244 Identities=16% Similarity=0.139 Sum_probs=179.7
Q ss_pred ceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-c-CceEEEccceeCCCCC-CCC----------CCCCCCC
Q 017448 19 YKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-N-GGFLIAEATGVNDTAQ-GYQ----------NTPGIWT 85 (371)
Q Consensus 19 ~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g-~Glii~e~~~v~~~~~-~~~----------~~~~~~~ 85 (371)
.++.|++++|++++|+= .++ +... +++++. | +|.|+++.+..++... ..+ +.+++.+
T Consensus 2 ~~~~G~~~~nP~~~aag-----~~~--~~~~---~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~ 71 (296)
T cd04740 2 VELAGLRLKNPVILASG-----TFG--FGEE---LSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQN 71 (296)
T ss_pred eEECCEEcCCCCEECCC-----CCC--CHHH---HHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCC
Confidence 57889999999999842 121 3333 444443 4 9999999887775431 111 1234444
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRL 165 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 165 (371)
+..-..++++.+..++.+.++++||... . +++|++
T Consensus 72 ~g~~~~~~~~~~~~~~~~~p~ivsi~g~---------------------------------~------------~~~~~~ 106 (296)
T cd04740 72 PGVEAFLEELLPWLREFGTPVIASIAGS---------------------------------T------------VEEFVE 106 (296)
T ss_pred cCHHHHHHHHHHHhhcCCCcEEEEEecC---------------------------------C------------HHHHHH
Confidence 4334455666666566788999999620 1 368999
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~ 245 (371)
+|++++++|+|+||||.+| |.+|.|.+.|| ++.+++.|++++||+++ +.||++|+++.
T Consensus 107 ~a~~~~~~G~d~iElN~~c---------P~~~~~g~~~~----~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~-------- 164 (296)
T cd04740 107 VAEKLADAGADAIELNISC---------PNVKGGGMAFG----TDPEAVAEIVKAVKKAT-DVPVIVKLTPN-------- 164 (296)
T ss_pred HHHHHHHcCCCEEEEECCC---------CCCCCCccccc----CCHHHHHHHHHHHHhcc-CCCEEEEeCCC--------
Confidence 9999999999999999876 88887756565 45689999999999998 24899999873
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCccc--------C------C-CCCC----CCchhhHhHHHhcCCCeEeeCCC-
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLFN--------A------Q-DKLD----APPYSLLPMRKAFDGTFIASGGY- 305 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~--------~------~-~~~~----~~~~~~~~ik~~~~~pVi~~Ggi- 305 (371)
.++..++++.++++|+|+|+++...... + . ..+. ..+.+++.+++.+++|||++|++
T Consensus 165 ---~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~ 241 (296)
T cd04740 165 ---VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241 (296)
T ss_pred ---chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence 1246789999999999999875321110 0 0 0011 12356778889899999999999
Q ss_pred CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC
Q 017448 306 NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA 343 (371)
Q Consensus 306 t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 343 (371)
+++++.++|+.| +|+|++||+++.||++++++++|..
T Consensus 242 ~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 242 SGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred CHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHH
Confidence 899999999998 9999999999999999999998753
No 27
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.94 E-value=2.2e-25 Score=212.71 Aligned_cols=243 Identities=15% Similarity=0.099 Sum_probs=175.5
Q ss_pred CceeCCeecCCceeeccC-CCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCC-CCCC----------CCCCCC
Q 017448 18 PYKMGPFNLSHRIVLAPL-TRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTA-QGYQ----------NTPGIW 84 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm-~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~-~~~~----------~~~~~~ 84 (371)
+.++.|++++|+++.|+- ... +..+. +..+. |+|.|++..+..++.. ...+ +..++.
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~~-------~~~~~---~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~ 72 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFGF-------GGEYA---RFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQ 72 (301)
T ss_pred ceEECCEECCCCcEECCcCCCC-------CHHHH---HHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCC
Confidence 467899999999999873 221 22333 33334 8999999988776542 1111 112222
Q ss_pred ChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 85 TEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 85 ~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
+...-..++++.+..++.+.++++||.- .. .++|+
T Consensus 73 ~~g~~~~~~~~~~~~~~~~~p~i~si~g---------------------------------~~------------~~~~~ 107 (301)
T PRK07259 73 NPGVDAFIEEELPWLEEFDTPIIANVAG---------------------------------ST------------EEEYA 107 (301)
T ss_pred CcCHHHHHHHHHHHHhccCCcEEEEecc---------------------------------CC------------HHHHH
Confidence 2221123344445455567889999851 01 36899
Q ss_pred HHHHHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCC-CCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 165 LAGRNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQY-GGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 165 ~aA~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~y-Ggs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
++|++++++| ||+||||++| |.. .. |..+.++.+++.|++++||+++ +.||+||+++.
T Consensus 108 ~~a~~~~~aG~~D~iElN~~c---------P~~-----~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~----- 167 (301)
T PRK07259 108 EVAEKLSKAPNVDAIELNISC---------PNV-----KHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPN----- 167 (301)
T ss_pred HHHHHHhccCCcCEEEEECCC---------CCC-----CCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCC-----
Confidence 9999999999 9999999999 542 23 4467889999999999999998 34899999972
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC----------------CCC---CCCCchhhHhHHHhcCCCeEeeC
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA----------------QDK---LDAPPYSLLPMRKAFDGTFIASG 303 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~----------------~~~---~~~~~~~~~~ik~~~~~pVi~~G 303 (371)
.++..++++.++++|+|.|+++....... ..+ .+..+.+++.+++.+++|||++|
T Consensus 168 ------~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~G 241 (301)
T PRK07259 168 ------VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMG 241 (301)
T ss_pred ------chhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEEC
Confidence 23567899999999999998754221100 000 01134567789999999999999
Q ss_pred CC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCC
Q 017448 304 GY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNA 342 (371)
Q Consensus 304 gi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 342 (371)
++ |+++++++|+.| +|+|++||+++.||+|++++++|.
T Consensus 242 GI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 242 GISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred CCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHH
Confidence 99 999999999998 999999999999999999999975
No 28
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.92 E-value=2.5e-26 Score=219.44 Aligned_cols=165 Identities=19% Similarity=0.208 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+.+++||+++.+.|+|+|+||+|| |..-....++|+.|.+.+..+.++|+++|++++ .||+||++..
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GC---------P~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g--- 132 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGC---------PAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLG--- 132 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE------------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESE---
T ss_pred HHHHHHHHhhhccCCcEEeccCCC---------CHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccc---
Confidence 568999999999999999999999 666666678999999999999999999999996 4889988873
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
..++.+++.++++.|+++|+++|.||.++..+.+ ....+++.++.+++.+++||++||++ |+++++++++...|
T Consensus 133 ----~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~-~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~ 207 (309)
T PF01207_consen 133 ----WDDSPEETIEFARILEDAGVSAITVHGRTRKQRY-KGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGA 207 (309)
T ss_dssp ----CT--CHHHHHHHHHHHHTT--EEEEECS-TTCCC-TS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-S
T ss_pred ----cccchhHHHHHHHHhhhcccceEEEecCchhhcC-CcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCC
Confidence 2345667899999999999999999999877766 44678899999999999999999999 99999999998679
Q ss_pred cEEEechHhhhCCcHHH---HHHhCCC
Q 017448 320 DLVAYGRSFLANPDLPK---RFELNAA 343 (371)
Q Consensus 320 D~V~~gR~~ladP~l~~---k~~~g~~ 343 (371)
|.||+||+++.||++++ .+..|..
T Consensus 208 dgvMigRgal~nP~lf~~~~~~~~~~~ 234 (309)
T PF01207_consen 208 DGVMIGRGALGNPWLFREIDQIKEGEP 234 (309)
T ss_dssp SEEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred cEEEEchhhhhcCHHhhhhhhhccCCC
Confidence 99999999999999998 5555543
No 29
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.91 E-value=8e-23 Score=194.05 Aligned_cols=243 Identities=13% Similarity=0.120 Sum_probs=174.6
Q ss_pred eeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCC-CCCCCC-------------------
Q 017448 20 KMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT-AQGYQN------------------- 79 (371)
Q Consensus 20 ~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~-~~~~~~------------------- 79 (371)
++.|++|+|+|+.|+-... -+..+++++.. + |+|.|++..+...+. +...++
T Consensus 2 ~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~-~-g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n 73 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLL------KTGELIARAAA-A-GFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILN 73 (289)
T ss_pred eECCEECCCCCEeCCCCCC------CCHHHHHHHHH-c-CCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEee
Confidence 5779999999999988542 13333333322 1 799999998876633 322221
Q ss_pred CCCCCChhhhhchHHHHHHHHH--cCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHH
Q 017448 80 TPGIWTEEQVEAWKPIVDAVHE--KGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIP 157 (371)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~ih~--~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~ 157 (371)
..++- ...++.|.+.....++ .+.++++||... .
T Consensus 74 ~~g~~-~~g~~~~~~~i~~~~~~~~~~pvi~si~g~---------------------------------~---------- 109 (289)
T cd02810 74 SFGLP-NLGLDVWLQDIAKAKKEFPGQPLIASVGGS---------------------------------S---------- 109 (289)
T ss_pred cCCCC-CcCHHHHHHHHHHHHhccCCCeEEEEeccC---------------------------------C----------
Confidence 11122 2234445444444444 478899998531 0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH 237 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~ 237 (371)
.++|+++|+++.++|+|+||||++| |..+. +..+.++.+++.|++++||+++ +.||.||+++.
T Consensus 110 --~~~~~~~a~~~~~~G~d~ielN~~c---------P~~~~-----~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~ 172 (289)
T cd02810 110 --KEDYVELARKIERAGAKALELNLSC---------PNVGG-----GRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPY 172 (289)
T ss_pred --HHHHHHHHHHHHHhCCCEEEEEcCC---------CCCCC-----CcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCC
Confidence 1468899999999999999999998 65543 2337788999999999999998 34899999973
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC---------C-C-----CC----CCchhhHhHHHhc--C
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ---------D-K-----LD----APPYSLLPMRKAF--D 296 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~---------~-~-----~~----~~~~~~~~ik~~~--~ 296 (371)
.+.++..++++.++++|+|+|+++.+...... . . .. ..+.+++.+++.+ +
T Consensus 173 ---------~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ 243 (289)
T cd02810 173 ---------FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLD 243 (289)
T ss_pred ---------CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCC
Confidence 24566889999999999999999764321100 0 0 00 0134567888888 8
Q ss_pred CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhC
Q 017448 297 GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELN 341 (371)
Q Consensus 297 ~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 341 (371)
+|||++||+ |++++.++|+.| +|+|++||+++.| |+++++++++
T Consensus 244 ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 244 IPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred CCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence 999999999 899999999998 9999999999999 9999999863
No 30
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.1e-23 Score=191.73 Aligned_cols=221 Identities=17% Similarity=0.153 Sum_probs=172.6
Q ss_pred eeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEcc
Q 017448 31 VLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQI 110 (371)
Q Consensus 31 v~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~QL 110 (371)
+.|||..+ |+...+.+.++- |+-++.|+++....-... +..|.---..-+.+.++++|+
T Consensus 22 i~APMvd~-------S~l~fR~L~R~y-~~~l~yTpMi~a~~fv~~-------------ek~r~~~~st~~~D~PLIvQf 80 (358)
T KOG2335|consen 22 IVAPMVDY-------SELAFRRLVRLY-GADLLYTPMIHAKTFVHS-------------EKYRDSELSTSPEDRPLIVQF 80 (358)
T ss_pred ccCCcccc-------cHHHHHHHHHHh-CCceEechHHHHHHHhcC-------------ccchhhhcccCCCCCceEEEE
Confidence 89999876 666644444443 889999998733211000 001111111124668999998
Q ss_pred ccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhh
Q 017448 111 WHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQ 190 (371)
Q Consensus 111 ~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~q 190 (371)
.- ..| +.+.+||+++..-+ |||+||+||
T Consensus 81 ~~---------------------------------ndp------------~~ll~Aa~lv~~y~-D~idlNcGC------ 108 (358)
T KOG2335|consen 81 GG---------------------------------NDP------------ENLLKAARLVQPYC-DGIDLNCGC------ 108 (358)
T ss_pred cC---------------------------------CCH------------HHHHHHHHHhhhhc-CcccccCCC------
Confidence 51 223 45789999988876 999999999
Q ss_pred hcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 191 FMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 191 FlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
|..=.+...||..|...+.++.|+|.+|+..++. +|++||+.+ .+.+++.++|++++++|+++|.||
T Consensus 109 ---Pq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~-pVs~KIRI~---------~d~~kTvd~ak~~e~aG~~~ltVH 175 (358)
T KOG2335|consen 109 ---PQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNV-PVSVKIRIF---------VDLEKTVDYAKMLEDAGVSLLTVH 175 (358)
T ss_pred ---CHHHHhcCCccceeccCHHHHHHHHHHHHhhcCC-CeEEEEEec---------CcHHHHHHHHHHHHhCCCcEEEEe
Confidence 8888899999999999999999999999999975 688888874 246678999999999999999999
Q ss_pred CCCcccCC-CCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHH
Q 017448 271 EPRLFNAQ-DKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 271 ~~~~~~~~-~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
+++..+.+ +.++.++.+++.||+.+. +||++||+| +.++++.+++..++|+||.|||++.||.++.-
T Consensus 176 GRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~ 245 (358)
T KOG2335|consen 176 GRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLT 245 (358)
T ss_pred cccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhcc
Confidence 99866543 134567889999999998 999999999 89999999996669999999999999999855
No 31
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.89 E-value=3.2e-22 Score=183.41 Aligned_cols=225 Identities=12% Similarity=0.103 Sum_probs=163.1
Q ss_pred ceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCC------CCCCCCCChhhhhchHHHHHHHHHc
Q 017448 29 RIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGY------QNTPGIWTEEQVEAWKPIVDAVHEK 102 (371)
Q Consensus 29 Riv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ih~~ 102 (371)
++++|||++. |+. .|-+..+..+|+.+.|++..+...... .+-.-+..+...+.+++....+++.
T Consensus 1 ~~~lApMag~-------td~--~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~ 71 (233)
T cd02911 1 PVALASMAGI-------TDG--DFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDS 71 (233)
T ss_pred CceeeecCCC-------cCH--HHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhcc
Confidence 5789999774 332 223334446788888888765332211 0000111222566777777777878
Q ss_pred CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEeccc
Q 017448 103 GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHG 182 (371)
Q Consensus 103 g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~ 182 (371)
+.++++||.. ..| +.++++|+.+.+ ++|+||||+
T Consensus 72 ~~p~~vqi~g---------------------------------~~~------------~~~~~aa~~~~~-~~~~ielN~ 105 (233)
T cd02911 72 NVLVGVNVRS---------------------------------SSL------------EPLLNAAALVAK-NAAILEINA 105 (233)
T ss_pred CCeEEEEecC---------------------------------CCH------------HHHHHHHHHHhh-cCCEEEEEC
Confidence 8999999952 112 457899998877 469999999
Q ss_pred ccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhc
Q 017448 183 ANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKY 262 (371)
Q Consensus 183 ~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~ 262 (371)
+| |........+|..+......+.+++++||+ + +.||+||++... + ++..++++.++++
T Consensus 106 gC---------P~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~-~~pVsvKir~g~---------~-~~~~~la~~l~~a 164 (233)
T cd02911 106 HC---------RQPEMVEAGAGEALLKDPERLSEFIKALKE-T-GVPVSVKIRAGV---------D-VDDEELARLIEKA 164 (233)
T ss_pred CC---------CcHHHhcCCcchHHcCCHHHHHHHHHHHHh-c-CCCEEEEEcCCc---------C-cCHHHHHHHHHHh
Confidence 99 655445556788899999999999999998 4 348999999831 1 3467899999999
Q ss_pred CccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 263 QILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 263 Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
|+|+||++.+.. ....++..+++++ +++|||+||++ +.+++.++++.| ||+|++||+ .|||+++.+.
T Consensus 165 G~d~ihv~~~~~-----g~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 165 GADIIHVDAMDP-----GNHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred CCCEEEECcCCC-----CCCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC--CCchHHHHhh
Confidence 999999864421 1123444555554 68999999999 999999999987 999999999 9999998875
No 32
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.86 E-value=8.9e-20 Score=175.50 Aligned_cols=243 Identities=18% Similarity=0.169 Sum_probs=168.6
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCC---CCCCCCC--------------
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVND---TAQGYQN-------------- 79 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~---~~~~~~~-------------- 79 (371)
++++.|++|+|.|+.|+-... -+.+. +.+... |+|-|++..+...+ .|...++
T Consensus 3 ~v~~~Gl~l~nPv~~ASg~~~------~~~e~---~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~ 73 (325)
T cd04739 3 STTYLGLSLKNPLVASASPLS------RNLDN---IRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSY 73 (325)
T ss_pred eEEECCEecCCCCEeCCcCCC------CCHHH---HHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccc
Confidence 467889999999999644321 12222 333434 89999998876553 2222211
Q ss_pred --CCCCCChhhhhchHHHHHHHH-HcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHH
Q 017448 80 --TPGIWTEEQVEAWKPIVDAVH-EKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEI 156 (371)
Q Consensus 80 --~~~~~~~~~~~~~~~l~~~ih-~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI 156 (371)
..++.+ .-++.|.+...... ..+.++++|++. ..
T Consensus 74 in~~g~~n-~g~~~~~~~i~~~~~~~~~pvi~si~g---------------------------------~~--------- 110 (325)
T cd04739 74 FPEYGRYN-LGPEEYLELIRRAKRAVSIPVIASLNG---------------------------------VS--------- 110 (325)
T ss_pred cccccccC-cCHHHHHHHHHHHHhccCCeEEEEeCC---------------------------------CC---------
Confidence 112222 22333333333333 336889999841 01
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcC
Q 017448 157 PQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSP 236 (371)
Q Consensus 157 ~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~ 236 (371)
.++|+++|+.+.++|+|+||||.+| .|.+.+.+|++++++ +.+++++||+++. .||.||+++
T Consensus 111 ---~~~~~~~a~~~~~~gad~iElN~s~-----------~~~~~~~~g~~~~~~---~~eiv~~v~~~~~-iPv~vKl~p 172 (325)
T cd04739 111 ---AGGWVDYARQIEEAGADALELNIYA-----------LPTDPDISGAEVEQR---YLDILRAVKSAVT-IPVAVKLSP 172 (325)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeCCC-----------CCCCCCcccchHHHH---HHHHHHHHHhccC-CCEEEEcCC
Confidence 1467899999999999999999998 356678889888754 6899999999884 499999997
Q ss_pred ccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC------------CCCC----CchhhHhHHHhcCCCeE
Q 017448 237 HANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD------------KLDA----PPYSLLPMRKAFDGTFI 300 (371)
Q Consensus 237 ~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~------------~~~~----~~~~~~~ik~~~~~pVi 300 (371)
+. ++..++++.+++.|+|.|.++.+......+ +.+. .+.++..+++.+++||+
T Consensus 173 ~~-----------~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIi 241 (325)
T cd04739 173 FF-----------SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLA 241 (325)
T ss_pred Cc-----------cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEE
Confidence 31 135679999999999999998764221110 0000 12345667788899999
Q ss_pred eeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhCC
Q 017448 301 ASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELNA 342 (371)
Q Consensus 301 ~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g~ 342 (371)
++||+ |.+++.++|..| +|+|+++|+++.+ |+++.++.++.
T Consensus 242 g~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 242 ASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred EECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHHH
Confidence 99999 999999999977 9999999999995 99999988874
No 33
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.85 E-value=1e-19 Score=173.38 Aligned_cols=248 Identities=13% Similarity=0.071 Sum_probs=173.3
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeC-C-CCCCCC----------CCCCCCC
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVN-D-TAQGYQ----------NTPGIWT 85 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~-~-~~~~~~----------~~~~~~~ 85 (371)
+++++|++|||.|+.|+=... -+...+.++... |+|.|++..+... + .+...+ +..++.+
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~--G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEA--GWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHh--CCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 467889999999999984211 133333333322 7999999988777 3 332111 1112222
Q ss_pred -----hhhhhchHHHHHHHHH-c-CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 017448 86 -----EEQVEAWKPIVDAVHE-K-GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQ 158 (371)
Q Consensus 86 -----~~~~~~~~~l~~~ih~-~-g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ 158 (371)
...+..|.+.+..+++ . +.++++|++-. ..+
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~--------------------------------~~~---------- 112 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCE--------------------------------YNK---------- 112 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCC--------------------------------CCH----------
Confidence 1223444333433333 2 46788888520 011
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
++|+++|+++.++|+|+||||.+| |.. .....+|..+......+.+++++||+.+. .||.|||+++
T Consensus 113 --~~~~~~a~~~~~~gad~ielN~sC---------P~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~- 178 (299)
T cd02940 113 --EDWTELAKLVEEAGADALELNFSC---------PHG-MPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPN- 178 (299)
T ss_pred --HHHHHHHHHHHhcCCCEEEEECCC---------CCC-CCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCC-
Confidence 578999999998999999999999 544 22234677888889999999999999884 3899999973
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCccc---------------------CCCCCCCC----chhhHhHHH
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFN---------------------AQDKLDAP----PYSLLPMRK 293 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~---------------------~~~~~~~~----~~~~~~ik~ 293 (371)
.++..++++.+++.|+|.|.++...... .. ..... +..+..+++
T Consensus 179 ----------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~-sG~a~~p~~l~~v~~~~~ 247 (299)
T cd02940 179 ----------ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY-SGPAVKPIALRAVSQIAR 247 (299)
T ss_pred ----------chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc-cCCCcchHHHHHHHHHHH
Confidence 1235679999999999999865422110 00 11112 456778999
Q ss_pred hc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh-CCcHHHHHHhC
Q 017448 294 AF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA-NPDLPKRFELN 341 (371)
Q Consensus 294 ~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g 341 (371)
.+ ++|||++||+ +.+++.++|..| ||+|+++|+++. .|+++.++.++
T Consensus 248 ~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 248 APEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence 99 8999999999 999999999988 999999999988 99999998875
No 34
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.85 E-value=4.4e-20 Score=178.97 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=167.2
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCC-CCCCCCC------CCCCCh---
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDT-AQGYQNT------PGIWTE--- 86 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~-~~~~~~~------~~~~~~--- 86 (371)
+.++.|++++|.|+.|+=... +. +.+++... |+|-|++..+...+. +...++. .++.+.
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~~-------~~---~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl 119 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFDK-------NG---EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGF 119 (344)
T ss_pred ceEECCEECCCCCEECCCCCC-------Ch---HHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCC
Confidence 578899999999987663221 22 22344444 899999998776532 2222221 111111
Q ss_pred --hhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 87 --EQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 87 --~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
..++.|.+.....+ .+.++++++..... .+ .....++|+
T Consensus 120 ~n~g~~~~~~~l~~~~-~~~pvivsI~~~~~-------------------------------~~-------~~~~~~d~~ 160 (344)
T PRK05286 120 NNDGADALAERLKKAY-RGIPLGINIGKNKD-------------------------------TP-------LEDAVDDYL 160 (344)
T ss_pred CCHhHHHHHHHHHHhc-CCCcEEEEEecCCC-------------------------------CC-------cccCHHHHH
Confidence 11333332222222 46678888853210 00 011235677
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcc-cCCCCCCCCchhhhhHHHHHHHHHHHHHhCC----cccEEEEcCccC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQV-NDRTDQYGGSLENRCRFALEIVEAVVNEIGA----ERVGIRLSPHAN 239 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~-N~R~D~yGgs~enR~r~~~eiv~avR~~vg~----~~i~vrl~~~~~ 239 (371)
+.++.+.+ ++|++|||.+| |.+ |.|.++++ ..+.||+++||+++++ .||.|||+++
T Consensus 161 ~~~~~~~~-~ad~lelN~sc---------P~~~g~~~~~~~-------~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~-- 221 (344)
T PRK05286 161 ICLEKLYP-YADYFTVNISS---------PNTPGLRDLQYG-------EALDELLAALKEAQAELHGYVPLLVKIAPD-- 221 (344)
T ss_pred HHHHHHHh-hCCEEEEEccC---------CCCCCcccccCH-------HHHHHHHHHHHHHHhccccCCceEEEeCCC--
Confidence 77777754 69999999999 554 55555544 4467999999999984 5899999973
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC---------C---CCC----CCchhhHhHHHhc--CCCeEe
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ---------D---KLD----APPYSLLPMRKAF--DGTFIA 301 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~---------~---~~~----~~~~~~~~ik~~~--~~pVi~ 301 (371)
.+.++..++++.+++.|+|+|.++.+...... . +.. ..+.+++.+++.+ ++||++
T Consensus 222 -------~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig 294 (344)
T PRK05286 222 -------LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIG 294 (344)
T ss_pred -------CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEE
Confidence 23455788999999999999999886532110 0 001 1234567888888 789999
Q ss_pred eCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhC
Q 017448 302 SGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELN 341 (371)
Q Consensus 302 ~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 341 (371)
+||+ |.+++.++|..| +|+|++||+++.+ |+++++++++
T Consensus 295 ~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 295 VGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred ECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHH
Confidence 9999 999999999987 9999999999885 9999999876
No 35
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.84 E-value=1.9e-19 Score=173.44 Aligned_cols=249 Identities=14% Similarity=0.077 Sum_probs=165.8
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCC-CCCCCC------------CCCCC
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT-AQGYQN------------TPGIW 84 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~-~~~~~~------------~~~~~ 84 (371)
+.++.|++++|.|+.|+=.. .+...+.++. .+ |+|.|++..+...+. +...++ ..++-
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~-------~~~~~~~~~~-~~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~ 110 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFD-------KNAEAIDALL-AL-GFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFN 110 (327)
T ss_pred ceEECCEECCCCCEeCcCCC-------CCHHHHHHHH-HC-CCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCC
Confidence 57889999999997765322 1223333332 22 899999998776532 222121 11221
Q ss_pred ChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 85 TEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 85 ~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
+. -++.|.+........+.++++|+.... + +++++..++|+
T Consensus 111 n~-g~~~~~~~l~~~~~~~~plivsi~g~~---------------------------------~-----~~~~~~~~d~~ 151 (327)
T cd04738 111 ND-GADAVAKRLKKRRPRGGPLGVNIGKNK---------------------------------D-----TPLEDAVEDYV 151 (327)
T ss_pred Cc-cHHHHHHHHHHhccCCCeEEEEEeCCC---------------------------------C-----CcccccHHHHH
Confidence 21 122222222211124678899885210 0 01334567788
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcc-cCCCCCCCCchhhhhHHHHHHHHHHHHHhC---C-cccEEEEcCccC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQV-NDRTDQYGGSLENRCRFALEIVEAVVNEIG---A-ERVGIRLSPHAN 239 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~-N~R~D~yGgs~enR~r~~~eiv~avR~~vg---~-~~i~vrl~~~~~ 239 (371)
+.++.+.. ++|++|||.+| |.+ +.|. ......+.+++++||+.+. . .||.||+++.
T Consensus 152 ~~~~~~~~-~ad~ielN~sc---------P~~~g~~~-------~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-- 212 (327)
T cd04738 152 IGVRKLGP-YADYLVVNVSS---------PNTPGLRD-------LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-- 212 (327)
T ss_pred HHHHHHHh-hCCEEEEECCC---------CCCCcccc-------ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC--
Confidence 88887765 49999999999 432 2222 3345677899999999985 2 3899999973
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC------------CCCC----CchhhHhHHHhc--CCCeEe
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD------------KLDA----PPYSLLPMRKAF--DGTFIA 301 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~------------~~~~----~~~~~~~ik~~~--~~pVi~ 301 (371)
.+.++..++++.++++|+|+|.++.+....... .... .+..++.+++.+ ++||++
T Consensus 213 -------~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~ 285 (327)
T cd04738 213 -------LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIG 285 (327)
T ss_pred -------CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEE
Confidence 234567889999999999999988754321100 0111 135667888988 789999
Q ss_pred eCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhC
Q 017448 302 SGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELN 341 (371)
Q Consensus 302 ~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 341 (371)
+||+ |.+++.++|..| +|+|++||+++.+ |+++.++.++
T Consensus 286 ~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 286 VGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred ECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence 9999 999999999987 9999999999886 9999999875
No 36
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.83 E-value=1.4e-19 Score=164.63 Aligned_cols=209 Identities=10% Similarity=0.018 Sum_probs=153.9
Q ss_pred HHHHHHcccCceEEEccceeCCCCCCC-------CCCCCCCChhh-hhchHHHHHHHHHcCCeeEEccccCCccccCCCC
Q 017448 51 LYYSQRTTNGGFLIAEATGVNDTAQGY-------QNTPGIWTEEQ-VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ 122 (371)
Q Consensus 51 ~~y~~~a~g~Glii~e~~~v~~~~~~~-------~~~~~~~~~~~-~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~ 122 (371)
+|-++.+..+|+++.|+..++...... .+.-.+++++. ...+.+-...++ .+.++++|+.+.
T Consensus 8 ~~~~~~~~~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~-~~~~vivnv~~~--------- 77 (231)
T TIGR00736 8 EFCRKFKDLFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAE-SRALVSVNVRFV--------- 77 (231)
T ss_pred HHHHhcCcCcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHh-hcCCEEEEEecC---------
Confidence 344444436899999999887542210 01112444322 234455555555 445899998531
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCC
Q 017448 123 PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQ 202 (371)
Q Consensus 123 ~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~ 202 (371)
.| ++|.++|+.+.+ ++|+||||+|| |+.......
T Consensus 78 ------------------------~~------------ee~~~~a~~v~~-~~d~IdiN~gC---------P~~~v~~~g 111 (231)
T TIGR00736 78 ------------------------DL------------EEAYDVLLTIAE-HADIIEINAHC---------RQPEITEIG 111 (231)
T ss_pred ------------------------CH------------HHHHHHHHHHhc-CCCEEEEECCC---------CcHHHcCCC
Confidence 12 457888888765 89999999999 776677778
Q ss_pred CCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCC
Q 017448 203 YGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLD 282 (371)
Q Consensus 203 yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~ 282 (371)
+|..+......+.++++++|+ .+ .||+||+++.. +.++..++++.++++|+|+|+|+.... . .+.
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~-~~-~PVsvKiR~~~---------~~~~~~~~a~~l~~aGad~i~Vd~~~~---g-~~~ 176 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKE-LN-KPIFVKIRGNC---------IPLDELIDALNLVDDGFDGIHVDAMYP---G-KPY 176 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHc-CC-CcEEEEeCCCC---------CcchHHHHHHHHHHcCCCEEEEeeCCC---C-Cch
Confidence 888899999999999999994 32 48999999831 223467899999999999999974321 1 122
Q ss_pred CCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 283 APPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 283 ~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
..+..++.+++.++ +|||+||++ |.+++.++++.| ||+||+||+++.+
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSVARAILKG 226 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence 46788999999995 999999999 999999999976 9999999999865
No 37
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.83 E-value=5.9e-19 Score=170.72 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=167.2
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCC-CC-------------C----
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQ-GY-------------Q---- 78 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~-~~-------------~---- 78 (371)
.++++|++|||.++.++-+... +.+. +.+... |+|-|++..+...+.+. .. .
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~~------~~~~---~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLSE------SVDN---VKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALD 74 (334)
T ss_pred eEEECCEecCCCCEecCcCCCC------CHHH---HHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhh
Confidence 4678999999999876654321 2222 333444 88988888775432211 00 0
Q ss_pred --CCCCCCChhhhhchHHHHHHHHH-cCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHH
Q 017448 79 --NTPGIWTEEQVEAWKPIVDAVHE-KGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEE 155 (371)
Q Consensus 79 --~~~~~~~~~~~~~~~~l~~~ih~-~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~e 155 (371)
+..++- ..-++.|.+.+..+++ .+.++++|+.. ..+
T Consensus 75 ~~n~~gl~-n~g~d~~~~~i~~~~~~~~~pvi~sI~g---------------------------------~~~------- 113 (334)
T PRK07565 75 YFPEPAKF-YVGPEEYLELIRRAKEAVDIPVIASLNG---------------------------------SSA------- 113 (334)
T ss_pred hhhhhhcc-CcCHHHHHHHHHHHHHhcCCcEEEEecc---------------------------------CCH-------
Confidence 111222 1224455555555543 35788988841 011
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEc
Q 017448 156 IPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLS 235 (371)
Q Consensus 156 I~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~ 235 (371)
++|++.|+++.++|+|+||||.+| .|.+.+.+|+..+++ ..+++++||+++. .||.+|++
T Consensus 114 -----~e~~~~a~~~~~agad~ielN~sc-----------pp~~~~~~g~~~~~~---~~eil~~v~~~~~-iPV~vKl~ 173 (334)
T PRK07565 114 -----GGWVDYARQIEQAGADALELNIYY-----------LPTDPDISGAEVEQR---YLDILRAVKSAVS-IPVAVKLS 173 (334)
T ss_pred -----HHHHHHHHHHHHcCCCEEEEeCCC-----------CCCCCCCccccHHHH---HHHHHHHHHhccC-CcEEEEeC
Confidence 357899999999999999999987 334567777776554 5899999999873 48999998
Q ss_pred CccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC------------CCCC----CchhhHhHHHhcCCCe
Q 017448 236 PHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD------------KLDA----PPYSLLPMRKAFDGTF 299 (371)
Q Consensus 236 ~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~------------~~~~----~~~~~~~ik~~~~~pV 299 (371)
+. .++..++++.+++.|+|+|.++.+......+ +.+. .+..+..+++.+++||
T Consensus 174 p~-----------~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipI 242 (334)
T PRK07565 174 PY-----------FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADL 242 (334)
T ss_pred CC-----------chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCE
Confidence 73 1234578999999999999998764321110 0000 1233556778889999
Q ss_pred EeeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhCC
Q 017448 300 IASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELNA 342 (371)
Q Consensus 300 i~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g~ 342 (371)
|++||+ |.+++.++|..| +|+|+++|+++.+ |++++++.++.
T Consensus 243 ig~GGI~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred EEECCCCCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHHH
Confidence 999999 999999999987 9999999999996 99999988874
No 38
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.79 E-value=1e-17 Score=167.06 Aligned_cols=248 Identities=10% Similarity=0.026 Sum_probs=168.1
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCCCCCC-CCC----------CC----
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDTAQGY-QNT----------PG---- 82 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~~~~~-~~~----------~~---- 82 (371)
+.++.|++|+|.|+.|+=.... -.+.+.+++ + + |+|.|++..+. .+.+... +.. +|
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~-----~~~~~~~~~-~-~-g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN-----KYYNVARAF-E-A-GWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC-----CHHHHHHHH-H-h-CCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCc
Confidence 5688999999999998753321 123334444 2 3 78988888766 3333322 111 11
Q ss_pred -CCChhhhhchHHHHHHHHH-c-CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017448 83 -IWTEEQVEAWKPIVDAVHE-K-GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQI 159 (371)
Q Consensus 83 -~~~~~~~~~~~~l~~~ih~-~-g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~i 159 (371)
++++..++.|-+.+..+++ . +.++++||+.. ..
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~--------------------------------~~------------ 111 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVE--------------------------------CN------------ 111 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccC--------------------------------CC------------
Confidence 1222223333333333332 2 45678888520 01
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCc-ccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQ-VNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~-~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
.++|++.|+.++++|+|+||||.+| |. .+. ..+|..+......+.+|+++||+.+. .||.|||+++.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~sc---------P~~~~~--~~~g~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKl~p~~ 179 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGC---------PHGMSE--RGMGSAVGQVPELVEMYTRWVKRGSR-LPVIVKLTPNI 179 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC---------CCCccc--cCCcccccCCHHHHHHHHHHHHhccC-CcEEEEcCCCc
Confidence 1568899999999999999999999 54 222 24677788889999999999999873 48999999731
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------C---CC------CCCC----CchhhHhHHHh
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFN-----------A---QD------KLDA----PPYSLLPMRKA 294 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~-----------~---~~------~~~~----~~~~~~~ik~~ 294 (371)
. +..++++.++++|+|.|.+....... + .. .+.. .+..+..+++.
T Consensus 180 -------~----~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~ 248 (420)
T PRK08318 180 -------T----DIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD 248 (420)
T ss_pred -------c----cHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc
Confidence 1 24579999999999998853322110 0 00 1111 14556678887
Q ss_pred c---CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh-CCcHHHHHHhCC
Q 017448 295 F---DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA-NPDLPKRFELNA 342 (371)
Q Consensus 295 ~---~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~ 342 (371)
+ ++|||++||+ |.+++.++|..| +|+|+++|+++. .|+++.++..+.
T Consensus 249 ~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 249 PETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred cccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHH
Confidence 7 7899999999 999999999988 999999999998 899999988874
No 39
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.78 E-value=2.9e-17 Score=156.00 Aligned_cols=242 Identities=14% Similarity=0.104 Sum_probs=160.3
Q ss_pred eeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCC-CCCCCC----------CCCCCChhh
Q 017448 20 KMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT-AQGYQN----------TPGIWTEEQ 88 (371)
Q Consensus 20 ~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~-~~~~~~----------~~~~~~~~~ 88 (371)
++.|++|||.|+.|+=... -+.+.+..+.+ + |+|.|++..+...+. +...++ ..++-+ .-
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~-~-G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n-~g 72 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWC------TTLEDLLELAA-S-STGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPN-LG 72 (294)
T ss_pred ccCCeeCCCCCEECCCCCC------CCHHHHHHHHH-c-CCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCC-cC
Confidence 5779999999999887521 12233333322 2 899999998766543 222221 122322 22
Q ss_pred hhchHHHHHHHHH----cCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHE----KGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 89 ~~~~~~l~~~ih~----~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
++.|.+.....++ .+.++++|++. . + ++|+
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g---------------------------------~-~------------~~~~ 106 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTG---------------------------------S-A------------EDIA 106 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCC---------------------------------C-H------------HHHH
Confidence 3444333333322 46788888851 1 1 4677
Q ss_pred HHHHHHHHc---CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 165 LAGRNAIKA---GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 165 ~aA~~a~~a---G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
+.+++..+. |+|+||||.+| |.+. -++++......+.+++++||+++. .||.|||+++.
T Consensus 107 ~~~~~~~~~~~~~ad~ielN~sC---------Pn~~-----~~~~~~~~~~~~~~i~~~v~~~~~-iPv~vKl~p~~--- 168 (294)
T cd04741 107 AMYKKIAAHQKQFPLAMELNLSC---------PNVP-----GKPPPAYDFDATLEYLTAVKAAYS-IPVGVKTPPYT--- 168 (294)
T ss_pred HHHHHHHhhccccccEEEEECCC---------CCCC-----CcccccCCHHHHHHHHHHHHHhcC-CCEEEEeCCCC---
Confidence 888877775 79999999999 5431 122344456789999999999984 38999999831
Q ss_pred cCCCCChHHHHHHHHHHHhhc--CccEEEEcCCCc-----c----cC----CC--CC----CCC---chhhHhHHHhcC-
Q 017448 242 EAQDSNPEALGLYMAKALNKY--QILYLHILEPRL-----F----NA----QD--KL----DAP---PYSLLPMRKAFD- 296 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~--Gvd~l~v~~~~~-----~----~~----~~--~~----~~~---~~~~~~ik~~~~- 296 (371)
+.++..++++.+.+. |+|+|.+..... . .+ .. .. .-. +..++.+++.++
T Consensus 169 ------~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~ 242 (294)
T cd04741 169 ------DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPS 242 (294)
T ss_pred ------CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCC
Confidence 234467889989888 899988643210 0 00 00 00 001 123466778884
Q ss_pred -CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh-CCcHHHHHHhC
Q 017448 297 -GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA-NPDLPKRFELN 341 (371)
Q Consensus 297 -~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g 341 (371)
+|||++||+ |.+++.++|..| ||+|+++++++. +|++++++.++
T Consensus 243 ~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 243 EIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHH
Confidence 899999999 999999999987 999999999995 99999999875
No 40
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.67 E-value=1.7e-14 Score=139.29 Aligned_cols=156 Identities=14% Similarity=0.059 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC------CcccEEE
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIG------AERVGIR 233 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg------~~~i~vr 233 (371)
.++|++.++++.+ .+|++|||..| | |......+ .....+.+++++||+.+. ..||.||
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNlSc---------P--n~~~~~~~----~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNVSS---------P--NTPGLRDL----QYKAELRDLLTAVKQEQDGLRRVHRVPVLVK 216 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEccC---------C--CCCCcccc----cCHHHHHHHHHHHHHHHHhhhhccCCceEEE
Confidence 4567777777765 59999999999 4 33222222 335778999999998885 1489999
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC---------C---CCC----CchhhHhHHHhc--
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD---------K---LDA----PPYSLLPMRKAF-- 295 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~---------~---~~~----~~~~~~~ik~~~-- 295 (371)
|+++ .+.++..++++.+++.|+|.|.+.......... . +.. -...+..+++.+
T Consensus 217 LsP~---------~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~ 287 (335)
T TIGR01036 217 IAPD---------LTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQG 287 (335)
T ss_pred eCCC---------CCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCC
Confidence 9984 233456789999999999999876543211000 0 000 112445667766
Q ss_pred CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh-CCcHHHHHHhC
Q 017448 296 DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA-NPDLPKRFELN 341 (371)
Q Consensus 296 ~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g 341 (371)
++|||++||+ |.+++.++|..| +|+|+++++++. +|+|+.+++++
T Consensus 288 ~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 288 RLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence 5899999999 999999999999 999999999988 59999999875
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.63 E-value=4.5e-14 Score=137.62 Aligned_cols=256 Identities=13% Similarity=0.119 Sum_probs=167.8
Q ss_pred CCCCcCCCCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcccCceEEEccceeCCC--CCCCC--------
Q 017448 9 TTTTIPLLTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTTNGGFLIAEATGVNDT--AQGYQ-------- 78 (371)
Q Consensus 9 ~~~~~~Lf~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~g~Glii~e~~~v~~~--~~~~~-------- 78 (371)
...+.+| ..++.|++|||.++.|+-.... +......+.. + |+|-|++-.+..++. +...+
T Consensus 5 ~~~~~dL--st~~~Gl~l~NP~i~ASgp~t~------~~e~~~~~~~-~-g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g 74 (385)
T PLN02495 5 AASEPDL--SVTVNGLKMPNPFVIGSGPPGT------NYTVMKRAFD-E-GWGGVIAKTVSLDASKVINVTPRYARLRAG 74 (385)
T ss_pred ccCCCcc--eEEECCEEcCCCcEeCCccCCC------CHHHHHHHHh-c-CCeEEEeccccCCccccCCCCCeEEecCcc
Confidence 3456666 5889999999999988765421 2222222211 2 788888776654331 11110
Q ss_pred -------CCCCC-----CChhhhhchHHHHHHHH-Hc-CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCC
Q 017448 79 -------NTPGI-----WTEEQVEAWKPIVDAVH-EK-GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGD 144 (371)
Q Consensus 79 -------~~~~~-----~~~~~~~~~~~l~~~ih-~~-g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~ 144 (371)
+..++ +++.-++.|-+....++ +. +.++++.|.-.
T Consensus 75 ~~~~~~~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~------------------------------- 123 (385)
T PLN02495 75 ANGSAKGRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEE------------------------------- 123 (385)
T ss_pred cccccccccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCC-------------------------------
Confidence 11122 22223555544445554 33 34777665310
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcc-cCCCCCCCCchhhhhHHHHHHHHHHHH
Q 017448 145 WSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQV-NDRTDQYGGSLENRCRFALEIVEAVVN 223 (371)
Q Consensus 145 ~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~-N~R~D~yGgs~enR~r~~~eiv~avR~ 223 (371)
.. .++|.+.|+++.++|+|++|||.+| |.+ +.|. .|..+.+....+.+|+++||+
T Consensus 124 -~s------------~~~~~~~a~~~e~~GaD~iELNiSC---------Pn~~~~r~--~g~~~gq~~e~~~~i~~~Vk~ 179 (385)
T PLN02495 124 -YN------------KDAWEEIIERVEETGVDALEINFSC---------PHGMPERK--MGAAVGQDCDLLEEVCGWINA 179 (385)
T ss_pred -CC------------HHHHHHHHHHHHhcCCCEEEEECCC---------CCCCCcCc--cchhhccCHHHHHHHHHHHHH
Confidence 01 2568888889999999999999999 432 2232 355788889999999999999
Q ss_pred HhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC------CCC-C--------C-----C
Q 017448 224 EIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA------QDK-L--------D-----A 283 (371)
Q Consensus 224 ~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~------~~~-~--------~-----~ 283 (371)
.+. .||.|||+++ ..+...+++.+++.|+|.|.+........ ..+ + . .
T Consensus 180 ~~~-iPv~vKLsPn-----------~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~a 247 (385)
T PLN02495 180 KAT-VPVWAKMTPN-----------ITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKA 247 (385)
T ss_pred hhc-CceEEEeCCC-----------hhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchh
Confidence 873 4899999983 12256789999999999997765332100 000 0 0 0
Q ss_pred C-ch---hhHhHHHhc------CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhCC
Q 017448 284 P-PY---SLLPMRKAF------DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELNA 342 (371)
Q Consensus 284 ~-~~---~~~~ik~~~------~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g~ 342 (371)
. +- ...++++.+ ++||+++||+ +.+++.+.|..| +|.|.++.+++.+ |.+++++.+|.
T Consensus 248 lkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L 317 (385)
T PLN02495 248 VRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAEL 317 (385)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHH
Confidence 0 00 112344544 4899999999 899999999999 9999999999999 99999998874
No 42
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.61 E-value=1.1e-14 Score=140.57 Aligned_cols=246 Identities=15% Similarity=0.161 Sum_probs=174.7
Q ss_pred CCCceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc--cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 16 LTPYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT--NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 16 f~P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~--g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
..|..-+.+.++.+.++||+++... .| |+++.+ |+-+...|+....+.=.+. ...|.
T Consensus 253 l~p~eKk~lD~r~K~~LaPLTTvGN---LP-------FRRlCk~lGADvTcgEMA~~tpLlqG~-----------~sEWA 311 (614)
T KOG2333|consen 253 LRPQEKKLLDFRDKKYLAPLTTVGN---LP-------FRRLCKKLGADVTCGEMAMATPLLQGT-----------ASEWA 311 (614)
T ss_pred cChhcccccccccceeeccccccCC---cc-------HHHHHHHhCCccchhHHHHHHHHhccc-----------chhhh
Confidence 3466656688999999999987522 22 677775 8888888887666542221 12232
Q ss_pred HHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-H
Q 017448 94 PIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAI-K 172 (371)
Q Consensus 94 ~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~-~ 172 (371)
-+ . -|...-.+.|||..+ .|. ...++|+... .
T Consensus 312 Ll-k-RH~sEdiFGVQlag~---------------------------------~pd------------t~~kaaq~i~e~ 344 (614)
T KOG2333|consen 312 LL-K-RHQSEDIFGVQLAGS---------------------------------KPD------------TAAKAAQVIAET 344 (614)
T ss_pred hh-h-hcCcccceeeEeccC---------------------------------ChH------------HHHHHHHHHHhh
Confidence 11 1 133334788998621 222 3467775554 5
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHH
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGG-SLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEAL 251 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGg-s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~ 251 (371)
+-.|.|+||+|| |.- .--.+-|| +|.||+.-+..+|+++....+.-||.|||+-.. ..+-+ -
T Consensus 345 ~~VDFIDlN~GC---------PID-lvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~-----keg~~--~ 407 (614)
T KOG2333|consen 345 CDVDFIDLNMGC---------PID-LVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGT-----KEGHP--V 407 (614)
T ss_pred cceeeeeccCCC---------Chh-eeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEeccc-----ccCch--h
Confidence 779999999999 421 11122344 699999999999999988887558999998521 11212 2
Q ss_pred HHHHHHHHh-hcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHc-CCccEEEech
Q 017448 252 GLYMAKALN-KYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAE-NYTDLVAYGR 326 (371)
Q Consensus 252 ~~~la~~l~-~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~-g~~D~V~~gR 326 (371)
+-.++..+. ++|++.+++|.++..+.+ ....+|+++.++.+.++ +|+|+||.+ +.+|--+-+.. ..+|-||+||
T Consensus 408 a~~Li~~i~newg~savTlHGRSRqQRY-TK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaR 486 (614)
T KOG2333|consen 408 AHELIPRIVNEWGASAVTLHGRSRQQRY-TKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIAR 486 (614)
T ss_pred HHHHHHHHhhccCcceEEecCchhhhhh-hcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeec
Confidence 446777777 999999999999888777 77788999998887764 799999998 99995554544 4599999999
Q ss_pred HhhhCCcHHHHHHhCCCCCCC
Q 017448 327 SFLANPDLPKRFELNAALNKY 347 (371)
Q Consensus 327 ~~ladP~l~~k~~~g~~~~~~ 347 (371)
++|..||++..|++-+-.++.
T Consensus 487 GALIKPWIFtEIkeqq~wD~s 507 (614)
T KOG2333|consen 487 GALIKPWIFTEIKEQQHWDIS 507 (614)
T ss_pred cccccchHhhhhhhhhcCCcc
Confidence 999999999999998765543
No 43
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.59 E-value=1.2e-13 Score=132.17 Aligned_cols=245 Identities=12% Similarity=0.145 Sum_probs=153.2
Q ss_pred CceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCC-CCCCCCC----------CCCCC
Q 017448 18 PYKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDT-AQGYQNT----------PGIWT 85 (371)
Q Consensus 18 P~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~-~~~~~~~----------~~~~~ 85 (371)
+.++.|++|||.++.|+=... -+... +++... |+|-|++..+...+. |...++. .++-
T Consensus 3 ~~~~~Gl~l~NPv~~AsG~~~------~~~e~---~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~- 72 (310)
T PRK02506 3 STQIAGFKFDNCLMNAAGVYC------MTKEE---LEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLP- 72 (310)
T ss_pred ceEECCEECCCCCEeCCCCCC------CCHHH---HHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCC-
Confidence 467889999999998876431 12223 333434 899999998766643 1111111 1211
Q ss_pred hhhhhchHHHHHHHHHc--CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEK--GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~--g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
...++.|.+.....++. +.++++++. | -+ +++|
T Consensus 73 n~g~~~~~~~i~~~~~~~~~~pvI~Si~--G------------------------------------~~-------~~~~ 107 (310)
T PRK02506 73 NLGFDYYLDYVLELQKKGPNKPHFLSVV--G------------------------------------LS-------PEET 107 (310)
T ss_pred CcCHHHHHHHHHHHHhhcCCCCEEEEEE--e------------------------------------Cc-------HHHH
Confidence 12233333333333332 356666652 1 01 1456
Q ss_pred HHHHHHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
.+.|+.+.++| +|+||||..| |.+-. +..+......+.+++++||+++. .||.|||+++.
T Consensus 108 ~~~a~~~~~~g~ad~iElN~Sc---------Pn~~~-----~~~~g~d~~~~~~i~~~v~~~~~-~Pv~vKlsp~~---- 168 (310)
T PRK02506 108 HTILKKIQASDFNGLVELNLSC---------PNVPG-----KPQIAYDFETTEQILEEVFTYFT-KPLGVKLPPYF---- 168 (310)
T ss_pred HHHHHHHhhcCCCCEEEEECCC---------CCCCC-----ccccccCHHHHHHHHHHHHHhcC-CccEEecCCCC----
Confidence 77788888888 8999999999 43311 23333334557999999999884 38999999841
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCC-----cc----cC----CC-----CCCC-C---chhhHhHHHhc--CCC
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPR-----LF----NA----QD-----KLDA-P---PYSLLPMRKAF--DGT 298 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~-----~~----~~----~~-----~~~~-~---~~~~~~ik~~~--~~p 298 (371)
+.......+..+.+.|++.+...... .. .+ .. ..+. . ......+++.+ ++|
T Consensus 169 -----~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ip 243 (310)
T PRK02506 169 -----DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQ 243 (310)
T ss_pred -----CHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCC
Confidence 22333445555666678776544310 00 00 00 0011 1 12334566777 589
Q ss_pred eEeeCCC-CHHHHHHHHHcCCccEEEechHhhh-CCcHHHHHHhCC
Q 017448 299 FIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA-NPDLPKRFELNA 342 (371)
Q Consensus 299 Vi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la-dP~l~~k~~~g~ 342 (371)
||++||+ +.+++.++|..| +|+|+++.+++. +|+++.++.++.
T Consensus 244 Iig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 244 IIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred EEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHH
Confidence 9999999 999999999999 999999999998 799999998874
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.55 E-value=3.5e-13 Score=127.15 Aligned_cols=249 Identities=14% Similarity=0.071 Sum_probs=164.3
Q ss_pred ceeCCeecCCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCC-CCCCCCCCCCCChhhh-------
Q 017448 19 YKMGPFNLSHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDT-AQGYQNTPGIWTEEQV------- 89 (371)
Q Consensus 19 ~~ig~~~l~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~-~~~~~~~~~~~~~~~~------- 89 (371)
.++-|+++||.+++|+=.... + -.++..++. |+|-|+++.+...+. |...|+...+.+++.+
T Consensus 4 ~~~~Gl~f~NPl~lAaG~~~~------~---~~~~~~~~~~g~G~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~ 74 (310)
T COG0167 4 TEILGLKFPNPLGLAAGFDGK------N---GEELDALAALGFGAIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFN 74 (310)
T ss_pred eeecceecCCCCeEcccCCcc------C---HHHHHHHHhcCCceEEecCCCCcCCCCCCCCeEEEecCcccHHHhcCCC
Confidence 458899999999997654311 1 345667776 899999997766633 3333433333322111
Q ss_pred -hchHHHHHHHHHcCCee-EEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 017448 90 -EAWKPIVDAVHEKGGIF-FCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAG 167 (371)
Q Consensus 90 -~~~~~l~~~ih~~g~~~-~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA 167 (371)
+++..+.+.+...--.. ++++ +++.+-. .+ ..++|.+-+
T Consensus 75 N~G~~~~~~~l~~~~~~~~~~~~-----------------~i~~~~~------------~~----------~~~~~~d~~ 115 (310)
T COG0167 75 NPGADAFLEELKLAKYEGKPIGV-----------------NIGKNKG------------GP----------SEEAWADYA 115 (310)
T ss_pred chhHHHHHHHHHhhhhccCCcCc-----------------ceEEecC------------CC----------cHHHHHHHH
Confidence 23334443322110000 0000 0111100 01 114566777
Q ss_pred HHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 168 RNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 168 ~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
....+++ +|+||||..| | | ++. |-++......+.+++++|++.+. .||.|||+|+
T Consensus 116 ~~~~~~~~ad~ielNiSc---------P--n--t~g-~~~l~~~~e~l~~l~~~vk~~~~-~Pv~vKl~P~--------- 171 (310)
T COG0167 116 RLLEEAGDADAIELNISC---------P--N--TPG-GRALGQDPELLEKLLEAVKAATK-VPVFVKLAPN--------- 171 (310)
T ss_pred HHHHhcCCCCEEEEEccC---------C--C--CCC-hhhhccCHHHHHHHHHHHHhccc-CceEEEeCCC---------
Confidence 7777788 8999999999 4 4 333 66777778899999999999884 4999999982
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccC-----C-C----------CCCC----CchhhHhHHHhcC--CCeEeeCC
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNA-----Q-D----------KLDA----PPYSLLPMRKAFD--GTFIASGG 304 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~-----~-~----------~~~~----~~~~~~~ik~~~~--~pVi~~Gg 304 (371)
.++..++|+.+++.|+|.|.++....... . . +..+ -...++.+++.++ +|||++||
T Consensus 172 --~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGG 249 (310)
T COG0167 172 --ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGG 249 (310)
T ss_pred --HHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 45577899999999999998765332111 0 0 0111 1224566778876 99999999
Q ss_pred C-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhCC
Q 017448 305 Y-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELNA 342 (371)
Q Consensus 305 i-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g~ 342 (371)
| |.+||.+.|..| |++|.++.+++.+ |.+++++.+|.
T Consensus 250 I~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 250 IETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred cCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHHH
Confidence 9 899999999999 9999999999999 99999998874
No 45
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.53 E-value=2.1e-13 Score=129.85 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH 237 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~ 237 (371)
+..++|++.|+++. +|+|++|||..| | |.. .+..+.+......++++.+|+... .||.|||+++
T Consensus 109 ~~~~d~~~~a~~~~-~~ad~lElN~Sc---------P--n~~---~~~~~~~~~~~~~~i~~~v~~~~~-~Pv~vKL~p~ 172 (295)
T PF01180_consen 109 EEIEDWAELAKRLE-AGADALELNLSC---------P--NVP---GGRPFGQDPELVAEIVRAVREAVD-IPVFVKLSPN 172 (295)
T ss_dssp GHHHHHHHHHHHHH-HHCSEEEEESTS---------T--TST---TSGGGGGHHHHHHHHHHHHHHHHS-SEEEEEE-ST
T ss_pred hhHHHHHHHHHHhc-CcCCceEEEeec---------c--CCC---CccccccCHHHHHHHHHHHHhccC-CCEEEEecCC
Confidence 45678888888777 999999999999 4 333 344566677788889999998873 3999999983
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC-----CC---C--------CCC----CchhhHhHHHhcC-
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA-----QD---K--------LDA----PPYSLLPMRKAFD- 296 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~-----~~---~--------~~~----~~~~~~~ik~~~~- 296 (371)
- .+ . ....++..+.+.|++.|.+........ .. . ... -..+++.+++.++
T Consensus 173 ~-------~~-~-~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~ 243 (295)
T PF01180_consen 173 F-------TD-I-EPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQ 243 (295)
T ss_dssp S-------SC-H-HHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred C-------Cc-h-HHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhcccc
Confidence 1 11 1 224566667788999988544321111 00 0 000 1234556888888
Q ss_pred -CCeEeeCCC-CHHHHHHHHHcCCccEEEechHh-hhCCcHHHHHHhC
Q 017448 297 -GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF-LANPDLPKRFELN 341 (371)
Q Consensus 297 -~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~-ladP~l~~k~~~g 341 (371)
+|||++||+ |.+++.++|..| +|.|.++.++ ..+|+.++++.++
T Consensus 244 ~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 244 DIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp SSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHH
T ss_pred ceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHH
Confidence 999999999 999999999999 9999999999 7799999999876
No 46
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.52 E-value=1.9e-12 Score=114.53 Aligned_cols=186 Identities=20% Similarity=0.219 Sum_probs=132.2
Q ss_pred HHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCC
Q 017448 47 PHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNG 125 (371)
Q Consensus 47 ~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~ 125 (371)
+...++++..+. |++++.++....++.+..... .+.+....+..+.++++|+.+.....
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 71 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDD------------KEVLKEVAAETDLPLGVQLAINDAAA-------- 71 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCcc------------ccHHHHHHhhcCCcEEEEEccCCchh--------
Confidence 678888988887 788999987776655432111 15566667788999999997642110
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCC
Q 017448 126 EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGG 205 (371)
Q Consensus 126 ~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGg 205 (371)
. ...+|++++++|+|+|+||..|+|+
T Consensus 72 ----------------------~--------------~~~~a~~~~~~g~d~v~l~~~~~~~------------------ 97 (200)
T cd04722 72 ----------------------A--------------VDIAAAAARAAGADGVEIHGAVGYL------------------ 97 (200)
T ss_pred ----------------------h--------------hhHHHHHHHHcCCCEEEEeccCCcH------------------
Confidence 0 0122889999999999999999765
Q ss_pred chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCC-C
Q 017448 206 SLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDA-P 284 (371)
Q Consensus 206 s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~-~ 284 (371)
.++..++++++|+.++..++.++++.... .+.. .+.+.|+|++.++............. .
T Consensus 98 -----~~~~~~~~~~i~~~~~~~~v~~~~~~~~~---------~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~ 158 (200)
T cd04722 98 -----AREDLELIRELREAVPDVKVVVKLSPTGE---------LAAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIA 158 (200)
T ss_pred -----HHHHHHHHHHHHHhcCCceEEEEECCCCc---------cchh-----hHHHcCCCEEEEcCCcCCCCCccCchhH
Confidence 58889999999999843488999986321 1111 16788999999876543322201110 1
Q ss_pred chhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 285 PYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 285 ~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
....+.+++..++||+++||+ +++++.++++.| +|+|++||
T Consensus 159 ~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~vgs 200 (200)
T cd04722 159 DLLLILAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIVGS 200 (200)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEecC
Confidence 134555667788999999999 679999999997 99999987
No 47
>PLN02826 dihydroorotate dehydrogenase
Probab=99.47 E-value=6.5e-12 Score=123.75 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHh--------CCc
Q 017448 157 PQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEI--------GAE 228 (371)
Q Consensus 157 ~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~v--------g~~ 228 (371)
+..+++|++.++++.. .+|.+|||..| | |.... ..+.+ ...+.+++++|++.. ...
T Consensus 200 ~~~~~Dy~~~~~~~~~-~aDylelNiSc---------P--Ntpgl---r~lq~-~~~l~~ll~~V~~~~~~~~~~~~~~~ 263 (409)
T PLN02826 200 EDAAADYVQGVRALSQ-YADYLVINVSS---------P--NTPGL---RKLQG-RKQLKDLLKKVLAARDEMQWGEEGPP 263 (409)
T ss_pred cccHHHHHHHHHHHhh-hCCEEEEECCC---------C--CCCCc---ccccC-hHHHHHHHHHHHHHHHHhhhccccCC
Confidence 4456788888888764 59999999999 4 33111 12222 355677888777553 123
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC--------C-----CCCC----CchhhHhH
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ--------D-----KLDA----PPYSLLPM 291 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~--------~-----~~~~----~~~~~~~i 291 (371)
||.||++++ .+.++..++++.+.+.|+|.|.++......+. . ...+ -...+..+
T Consensus 264 Pv~vKlaPd---------l~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l 334 (409)
T PLN02826 264 PLLVKIAPD---------LSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREM 334 (409)
T ss_pred ceEEecCCC---------CCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHH
Confidence 899999983 23455678999999999999988764322110 0 1111 12244567
Q ss_pred HHhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhCC
Q 017448 292 RKAF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELNA 342 (371)
Q Consensus 292 k~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g~ 342 (371)
++.+ ++|||++||+ |.+++.+.|..| +++|.++++++.+ |.++.++.++.
T Consensus 335 ~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 335 YRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAEL 388 (409)
T ss_pred HHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHHH
Confidence 7777 6899999999 999999999999 9999999999995 99999998864
No 48
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.38 E-value=4.7e-11 Score=113.93 Aligned_cols=130 Identities=16% Similarity=0.031 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
..+.++++.+.|+|+|+||.+| |....| +..++++.+|++++ .||.+|...
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~---------p~~~~~-------------~~~~~i~~l~~~~~-~pvivK~v~------ 181 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDT---------PVLGRR-------------LTWDDLAWLRSQWK-GPLILKGIL------ 181 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCC---------CCCCCC-------------CCHHHHHHHHHhcC-CCEEEeecC------
Confidence 3455677788999999999999 432222 34688999999885 378888532
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
+ .+.++.++++|+|+|.++...-.... .....+..+..+++.+ ++|||++||+ +..++.++|.-| +
T Consensus 182 -----s----~~~a~~a~~~G~d~I~v~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG-A 250 (299)
T cd02809 182 -----T----PEDALRAVDAGADGIVVSNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG-A 250 (299)
T ss_pred -----C----HHHHHHHHHCCCCEEEEcCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-C
Confidence 1 23578889999999999653211111 2233456677788877 4999999999 999999999988 9
Q ss_pred cEEEechHhhhCC
Q 017448 320 DLVAYGRSFLANP 332 (371)
Q Consensus 320 D~V~~gR~~ladP 332 (371)
|+|++||+++...
T Consensus 251 d~V~ig~~~l~~~ 263 (299)
T cd02809 251 DAVLIGRPFLYGL 263 (299)
T ss_pred CEEEEcHHHHHHH
Confidence 9999999988654
No 49
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=99.36 E-value=1.1e-11 Score=121.31 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCcc
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHA 238 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~ 238 (371)
.++|+++|++++++||++|+|+.|+++++. ||.++..++|++||+++|++ .|.++.|.
T Consensus 140 ~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~-------------------~~~~~d~~~v~~ir~~~g~~~~l~vDaN~-- 198 (357)
T cd03316 140 PEELAEEAKRAVAEGFTAVKLKVGGPDSGG-------------------EDLREDLARVRAVREAVGPDVDLMVDANG-- 198 (357)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcch-------------------HHHHHHHHHHHHHHHhhCCCCEEEEECCC--
Confidence 456888999999999999999999876554 89999999999999999987 67777764
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
..+.++++++++.|++.+++|++ .|. +..+...++.+++.+++||++.+.+ +++++.++++++
T Consensus 199 -------~~~~~~a~~~~~~l~~~~i~~iE--qP~-------~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~ 262 (357)
T cd03316 199 -------RWDLAEAIRLARALEEYDLFWFE--EPV-------PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG 262 (357)
T ss_pred -------CCCHHHHHHHHHHhCccCCCeEc--CCC-------CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC
Confidence 33578899999999999999987 331 2234567788999999999999988 999999999999
Q ss_pred CccEEEe
Q 017448 318 YTDLVAY 324 (371)
Q Consensus 318 ~~D~V~~ 324 (371)
.+|+|.+
T Consensus 263 ~~d~v~~ 269 (357)
T cd03316 263 AVDIIQP 269 (357)
T ss_pred CCCEEec
Confidence 9999965
No 50
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.28 E-value=2.5e-10 Score=110.40 Aligned_cols=141 Identities=21% Similarity=0.135 Sum_probs=96.1
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHH
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
.+.|+++||..+. +.-.+|. .+ .++ +-.++.|++||+.++ .||.||...+ .. .
T Consensus 140 i~adal~i~ln~~---q~~~~p~------g~-~~f----~~~le~i~~i~~~~~-vPVivK~~g~--------g~----~ 192 (333)
T TIGR02151 140 IEADALAIHLNVL---QELVQPE------GD-RNF----KGWLEKIAEICSQLS-VPVIVKEVGF--------GI----S 192 (333)
T ss_pred hcCCCEEEcCccc---ccccCCC------CC-cCH----HHHHHHHHHHHHhcC-CCEEEEecCC--------CC----C
Confidence 4679999988652 2222221 11 122 336799999999983 4899998752 11 3
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCC-----C--CC---C--CCc-----hhhHhHHH-hcCCCeEeeCCC-CHHHHHHH
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQ-----D--KL---D--APP-----YSLLPMRK-AFDGTFIASGGY-NRDDGNKA 313 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~-----~--~~---~--~~~-----~~~~~ik~-~~~~pVi~~Ggi-t~~~a~~~ 313 (371)
.+.++.|+++|+|+|+++...-.... + .. . ..+ ..+..+++ .+++|||++||+ +..++.++
T Consensus 193 ~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~ka 272 (333)
T TIGR02151 193 KEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKA 272 (333)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHH
Confidence 46889999999999999864311100 0 00 0 111 12334555 457999999999 99999999
Q ss_pred HHcCCccEEEechHhh-----hCCcHHHHHHhC
Q 017448 314 VAENYTDLVAYGRSFL-----ANPDLPKRFELN 341 (371)
Q Consensus 314 l~~g~~D~V~~gR~~l-----adP~l~~k~~~g 341 (371)
|..| ||+|++||+++ .+|+.+.+..+.
T Consensus 273 LalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~ 304 (333)
T TIGR02151 273 IALG-ADAVGMARPFLKAALDEGEEAVIEEIEL 304 (333)
T ss_pred HHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHH
Confidence 9999 99999999999 789877776655
No 51
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.05 E-value=4.7e-08 Score=95.24 Aligned_cols=133 Identities=24% Similarity=0.196 Sum_probs=90.6
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEA 250 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e 250 (371)
...+.|+++||..++ +.-.+|. |. . ..+-.++.|++||+.++ .||.||.+.+ ..+
T Consensus 145 ~~~~adal~l~l~~~---qe~~~p~---------g~-~-~f~~~le~i~~i~~~~~-vPVivK~~g~--------g~s-- 199 (352)
T PRK05437 145 EMIEADALQIHLNPL---QELVQPE---------GD-R-DFRGWLDNIAEIVSALP-VPVIVKEVGF--------GIS-- 199 (352)
T ss_pred HhcCCCcEEEeCccc---hhhcCCC---------Cc-c-cHHHHHHHHHHHHHhhC-CCEEEEeCCC--------CCc--
Confidence 345789999997542 2222331 11 0 12346799999999984 4899999752 122
Q ss_pred HHHHHHHHHhhcCccEEEEcCCCcc--------cCC---C-CC--C---CCchhhHhHHHh-cCCCeEeeCCC-CHHHHH
Q 017448 251 LGLYMAKALNKYQILYLHILEPRLF--------NAQ---D-KL--D---APPYSLLPMRKA-FDGTFIASGGY-NRDDGN 311 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~~~--------~~~---~-~~--~---~~~~~~~~ik~~-~~~pVi~~Ggi-t~~~a~ 311 (371)
.+.++.|+++|+|+|+++...-+ ... . .. . +-...+..+++. .++||+++||+ +..++.
T Consensus 200 --~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~ 277 (352)
T PRK05437 200 --KETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIA 277 (352)
T ss_pred --HHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHH
Confidence 45788899999999999763210 000 0 00 0 011234556776 48999999999 999999
Q ss_pred HHHHcCCccEEEechHhhhC
Q 017448 312 KAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~lad 331 (371)
++|..| +|+|++||+++..
T Consensus 278 k~l~~G-Ad~v~ig~~~l~~ 296 (352)
T PRK05437 278 KALALG-ADAVGMAGPFLKA 296 (352)
T ss_pred HHHHcC-CCEEEEhHHHHHH
Confidence 999999 9999999999976
No 52
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.00 E-value=7.1e-09 Score=100.85 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+++++++++.+++.+ ...++.++|++||++. +.+|++..
T Consensus 102 a~aa~~~~e~~~~~~-------------------------------~p~l~~~ii~~vr~a~----VtvkiRl~------ 140 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------------------------------KPELLGERIAEVRDSG----VITAVRVS------ 140 (369)
T ss_pred HHHHHHHHHcCCCcc-------------------------------ChHHHHHHHHHHHhcc----eEEEEecC------
Confidence 678899988888762 2678899999999963 44555441
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLV 322 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V 322 (371)
. ..+.++++.++++|+|+|.+|.++....+......+..+.++++.+++|||+ |++ |.+++.++++.| ||+|
T Consensus 141 --~---~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG-aDgV 213 (369)
T TIGR01304 141 --P---QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG-AAGV 213 (369)
T ss_pred --C---cCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEE
Confidence 0 1356799999999999999987764433211122345566777788999997 666 999999999977 9999
Q ss_pred EechHh
Q 017448 323 AYGRSF 328 (371)
Q Consensus 323 ~~gR~~ 328 (371)
++||+.
T Consensus 214 ~~G~gg 219 (369)
T TIGR01304 214 IVGPGG 219 (369)
T ss_pred EECCCC
Confidence 988755
No 53
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.84 E-value=3.2e-07 Score=84.39 Aligned_cols=123 Identities=20% Similarity=0.119 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++.++++|+|+|.|+.+. ..++++.+++. + .++.+.+.
T Consensus 70 ~~~~~~~~~~g~d~v~l~~~~-----------------------------~~~~~~~~~~~-~-i~~i~~v~-------- 110 (236)
T cd04730 70 EALLEVALEEGVPVVSFSFGP-----------------------------PAEVVERLKAA-G-IKVIPTVT-------- 110 (236)
T ss_pred HHHHHHHHhCCCCEEEEcCCC-----------------------------CHHHHHHHHHc-C-CEEEEeCC--------
Confidence 456677788999999986542 02344555542 2 23443322
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCC-CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKL-DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~-~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
+. +.++.+.+.|+|++.+............ ...+..++.+++.+++||++.||+ +++++.++++.| +|+
T Consensus 111 ----~~----~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-adg 181 (236)
T cd04730 111 ----SV----EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-ADG 181 (236)
T ss_pred ----CH----HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CcE
Confidence 12 2445667789999987553211111010 122456788888889999999999 679999999987 999
Q ss_pred EEechHhhhCCcH
Q 017448 322 VAYGRSFLANPDL 334 (371)
Q Consensus 322 V~~gR~~ladP~l 334 (371)
|++|++++..++.
T Consensus 182 V~vgS~l~~~~e~ 194 (236)
T cd04730 182 VQMGTRFLATEES 194 (236)
T ss_pred EEEchhhhcCccc
Confidence 9999999998865
No 54
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.83 E-value=8.9e-08 Score=92.11 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+++++.++.+.+.||++|+|+.|. .+ +...++|++||+++| + .|.++.|.
T Consensus 136 ~~~~~~~~~~~~~Gf~~iKik~g~---------------------~~----~~d~~~v~~lr~~~g-~~~l~vD~n~--- 186 (316)
T cd03319 136 EAMAAAAKKAAKRGFPLLKIKLGG---------------------DL----EDDIERIRAIREAAP-DARLRVDANQ--- 186 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCC---------------------Ch----hhHHHHHHHHHHhCC-CCeEEEeCCC---
Confidence 456778888888999999999753 11 224799999999999 6 56666654
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
..+.++++++++.|++.+++|++ +|. ...+...++++++.+++||++++.+ +++++.++++++.
T Consensus 187 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~-------~~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~ 251 (316)
T cd03319 187 ------GWTPEEAVELLRELAELGVELIE--QPV-------PAGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGA 251 (316)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC-------CCCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCC
Confidence 23457799999999999999997 442 2234566788999999999999998 8999999999999
Q ss_pred ccEEEec
Q 017448 319 TDLVAYG 325 (371)
Q Consensus 319 ~D~V~~g 325 (371)
+|.|.+-
T Consensus 252 ~d~v~~~ 258 (316)
T cd03319 252 YDGINIK 258 (316)
T ss_pred CCEEEEe
Confidence 9999764
No 55
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=98.81 E-value=4.4e-07 Score=87.54 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
+.+.+..+.++|+|.|+|+.+||. + ....++|+.+|+..++-+|.+ ..
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G~-------------------~-----~~~~~~i~~ik~~~p~v~Vi~--G~------ 142 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHGH-------------------S-----VYVIEMIKFIKKKYPNVDVIA--GN------ 142 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-------------------c-----HHHHHHHHHHHHHCCCceEEE--CC------
Confidence 355666777899999999987741 1 345888999998864213332 11
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCC--CCCCCchhhHhHHHh---cCCCeEeeCCC-CHHHHHHH
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQD--KLDAPPYSLLPMRKA---FDGTFIASGGY-NRDDGNKA 313 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~--~~~~~~~~~~~ik~~---~~~pVi~~Ggi-t~~~a~~~ 313 (371)
-.+ .+.++.+.++|+|+|.++.+. ...... ...+....+..+.+. .++|||+.||+ ++.++.++
T Consensus 143 ---v~t----~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA 215 (325)
T cd00381 143 ---VVT----AEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA 215 (325)
T ss_pred ---CCC----HHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Confidence 112 346677888999999884321 111100 122233444455444 36999999999 89999999
Q ss_pred HHcCCccEEEechHhhhCCcHH
Q 017448 314 VAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ladP~l~ 335 (371)
|+.| +|.|++||.|+.-.+-+
T Consensus 216 la~G-A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 216 LAAG-ADAVMLGSLLAGTDESP 236 (325)
T ss_pred HHcC-CCEEEecchhcccccCC
Confidence 9988 99999999999987665
No 56
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.80 E-value=1.6e-07 Score=88.00 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+++++.++.+.+.||..++|+.|.. ...-.++|++||+++|++ .|.+..|.
T Consensus 87 ~~~~~~~~~~~~~G~~~~KiKvg~~-------------------------~~~d~~~v~~vr~~~g~~~~l~vDan~--- 138 (265)
T cd03315 87 AEVAEEARRALEAGFRTFKLKVGRD-------------------------PARDVAVVAALREAVGDDAELRVDANR--- 138 (265)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCC-------------------------HHHHHHHHHHHHHhcCCCCEEEEeCCC---
Confidence 3456777788889999999987521 133478999999999875 44444332
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
..+.+++..+++.|++.+++||+ +|. ...+....+.+++.+++||++.+.+ ++.++.++++++.
T Consensus 139 ------~~~~~~a~~~~~~l~~~~i~~iE--eP~-------~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~ 203 (265)
T cd03315 139 ------GWTPKQAIRALRALEDLGLDYVE--QPL-------PADDLEGRAALARATDTPIMADESAFTPHDAFRELALGA 203 (265)
T ss_pred ------CcCHHHHHHHHHHHHhcCCCEEE--CCC-------CcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCC
Confidence 33578899999999999999998 431 2234567788999999999999988 8999999999999
Q ss_pred ccEEEe
Q 017448 319 TDLVAY 324 (371)
Q Consensus 319 ~D~V~~ 324 (371)
+|+|.+
T Consensus 204 ~d~v~~ 209 (265)
T cd03315 204 ADAVNI 209 (265)
T ss_pred CCEEEE
Confidence 999987
No 57
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.78 E-value=7.4e-08 Score=89.31 Aligned_cols=139 Identities=17% Similarity=0.117 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+++|+.|+++|+|.|.++.+| | +..|... |-++.|.+. .|++||+++. -||..+....
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~---------p-sd~~~~g-g~~Rm~~p~----~I~aIk~~V~-iPVigk~Rig------ 84 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERV---------P-ADIRAAG-GVARMADPK----MIEEIMDAVS-IPVMAKARIG------ 84 (293)
T ss_pred HHHHHHHHHhChHHHHHccCC---------C-chHhhcC-CeeecCCHH----HHHHHHHhCC-CCeEEeehhh------
Confidence 689999999999999999999 5 3456554 667777654 4558888883 3766665531
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCC-------------cccCC--------------------------------
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPR-------------LFNAQ-------------------------------- 278 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~-------------~~~~~-------------------------------- 278 (371)
...-++.|++.|+|+|+-++.- |..+.
T Consensus 85 --------h~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v 156 (293)
T PRK04180 85 --------HFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNV 156 (293)
T ss_pred --------HHHHHHHHHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccH
Confidence 0223445556666666433200 00000
Q ss_pred -----------------------------CCCCCCchhhHhHHHhcCCCeE--eeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 279 -----------------------------DKLDAPPYSLLPMRKAFDGTFI--ASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 279 -----------------------------~~~~~~~~~~~~ik~~~~~pVi--~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+.....+.+++++++..++||+ +.||| |++++..+++.| ||.|++|+
T Consensus 157 ~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaVGS 235 (293)
T PRK04180 157 VEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-ADGVFVGS 235 (293)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEEcH
Confidence 0011234566778888899997 99999 999999999988 99999999
Q ss_pred HhhhCCc
Q 017448 327 SFLANPD 333 (371)
Q Consensus 327 ~~ladP~ 333 (371)
+++..++
T Consensus 236 aI~ks~d 242 (293)
T PRK04180 236 GIFKSGD 242 (293)
T ss_pred HhhcCCC
Confidence 9985544
No 58
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.9e-08 Score=96.61 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=113.3
Q ss_pred CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHH
Q 017448 174 GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGL 253 (371)
Q Consensus 174 G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~ 253 (371)
-.-|++||+|| |--|.-...-|+.+.....-+..|+..+.+... -++..||+.- ++.++++
T Consensus 106 DvsgidiN~gC---------pK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~-vpvtckIR~L---------~s~edtL 166 (477)
T KOG2334|consen 106 DVSGIDINMGC---------PKEFSIHGGMGAALLTDPDKLVAILYSLVKGNK-VPVTCKIRLL---------DSKEDTL 166 (477)
T ss_pred ccccccccCCC---------CCccccccCCCchhhcCHHHHHHHHHHHHhcCc-ccceeEEEec---------CCcccHH
Confidence 36789999999 888888888888888888888999999888762 3788888752 2455678
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C---HHHHHHHHHcCCccEEEechHh
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N---RDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t---~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.+.+++.+.|+..|.||.+++.... ..+.....++.+...+. +|||++|+. + ..|.+...+....|.|+++|.+
T Consensus 167 ~lv~ri~~tgi~ai~vh~rt~d~r~-~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A 245 (477)
T KOG2334|consen 167 KLVKRICATGIAAITVHCRTRDERN-QEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAA 245 (477)
T ss_pred HHHHHHHhcCCceEEEEeeccccCC-CCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhh
Confidence 8999999999999999988765443 33445567788888887 999999997 6 4567777777779999999999
Q ss_pred hhCCcHH
Q 017448 329 LANPDLP 335 (371)
Q Consensus 329 ladP~l~ 335 (371)
..||-.+
T Consensus 246 ~~n~SiF 252 (477)
T KOG2334|consen 246 ESNPSIF 252 (477)
T ss_pred hcCCcee
Confidence 9999655
No 59
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.77 E-value=1.2e-07 Score=87.76 Aligned_cols=146 Identities=13% Similarity=0.036 Sum_probs=101.6
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+.++++..+|+|-|-+ |.++.+.+.++.++++++++.+ .+++.+....... .+
T Consensus 88 edv~~~l~~Ga~kvvi-----------------------Gs~~l~~p~l~~~i~~~~~~~i---~vsld~~~~~v~~-~G 140 (241)
T PRK14024 88 ESLEAALATGCARVNI-----------------------GTAALENPEWCARVIAEHGDRV---AVGLDVRGHTLAA-RG 140 (241)
T ss_pred HHHHHHHHCCCCEEEE-----------------------CchHhCCHHHHHHHHHHhhhhE---EEEEEEeccEecc-CC
Confidence 5666777789987654 3344556888888888776543 2333331100000 01
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHH--cCCccE
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVA--ENYTDL 321 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~--~g~~D~ 321 (371)
+..+.....++++.+++.|++.+-++..+..... .+ +++..++.+++.+++||+++|++ +.+++.++.+ ...||.
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~-~G-~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~Gvdg 218 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTL-TG-PNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEG 218 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCc-cC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccE
Confidence 2222334678999999999999999887665554 23 47888999999999999999999 8999998864 234999
Q ss_pred EEechHhhhCCcHHHHHH
Q 017448 322 VAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 322 V~~gR~~ladP~l~~k~~ 339 (371)
|++||+++..+--...++
T Consensus 219 V~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 219 AIVGKALYAGAFTLPEAL 236 (241)
T ss_pred EEEeHHHHcCCCCHHHHH
Confidence 999999999986555543
No 60
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.76 E-value=1.5e-07 Score=92.44 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+++++.|+++++.||++|+|+.+.+. . .+..++.|++||+++|++ .|.|..|.
T Consensus 145 ~~~~~~a~~~~~~Gf~~~Kik~~~~~-------------------~----~~~di~~i~~vR~~~G~~~~l~vDan~--- 198 (368)
T cd03329 145 EAYADFAEECKALGYRAIKLHPWGPG-------------------V----VRRDLKACLAVREAVGPDMRLMHDGAH--- 198 (368)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCch-------------------h----HHHHHHHHHHHHHHhCCCCeEEEECCC---
Confidence 45788888899999999999753210 0 234689999999999987 57766653
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C-HHHHHHHHHcC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N-RDDGNKAVAEN 317 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t-~~~a~~~l~~g 317 (371)
..+.++++.+++.|++.++.|++ +|- ........+.+++.+++||.+...+ + ++++.++++.+
T Consensus 199 ------~~~~~~A~~~~~~l~~~~l~~iE--eP~-------~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~ 263 (368)
T cd03329 199 ------WYSRADALRLGRALEELGFFWYE--DPL-------REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG 263 (368)
T ss_pred ------CcCHHHHHHHHHHhhhcCCCeEe--CCC-------CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC
Confidence 34578899999999999999998 442 2223456678999999999887777 7 99999999999
Q ss_pred CccEEEe
Q 017448 318 YTDLVAY 324 (371)
Q Consensus 318 ~~D~V~~ 324 (371)
.+|+|.+
T Consensus 264 a~d~v~~ 270 (368)
T cd03329 264 ATDFLRA 270 (368)
T ss_pred CCCEEec
Confidence 9998854
No 61
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.76 E-value=1.8e-07 Score=86.40 Aligned_cols=145 Identities=17% Similarity=0.092 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc--cEEEEcCccCcCc
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER--VGIRLSPHANYME 242 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~--i~vrl~~~~~~~~ 242 (371)
+.++.+.++|+|+|-|.... .++. +.+..+++.+|.+. +++.+....-..
T Consensus 89 ~~~~~~~~~Ga~~v~iGs~~-----------------------~~~~----~~~~~i~~~~g~~~i~~sid~~~~~v~~- 140 (241)
T PRK13585 89 EDAASLLDLGVDRVILGTAA-----------------------VENP----EIVRELSEEFGSERVMVSLDAKDGEVVI- 140 (241)
T ss_pred HHHHHHHHcCCCEEEEChHH-----------------------hhCh----HHHHHHHHHhCCCcEEEEEEeeCCEEEE-
Confidence 45567778999999763221 1122 45666677777552 344332110000
Q ss_pred CCCC-ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 243 AQDS-NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 243 ~~~~-~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
.++. .+..+..++++.+++.|++.++++........ ...++..++.+++.+++||+++||+ +++++.++++.| +|
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~--~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G-a~ 217 (241)
T PRK13585 141 KGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL--EGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAG-AA 217 (241)
T ss_pred CCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc--CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CC
Confidence 0111 11113467889999999999998765322221 2346677899999999999999999 799999987776 99
Q ss_pred EEEechHhhhCCcHHHHHHh
Q 017448 321 LVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 321 ~V~~gR~~ladP~l~~k~~~ 340 (371)
.|++|++++.+|..+.+++.
T Consensus 218 gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 218 GVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred EEEEEHHHhcCCcCHHHHHH
Confidence 99999999999998877653
No 62
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.74 E-value=2.1e-07 Score=89.82 Aligned_cols=132 Identities=27% Similarity=0.276 Sum_probs=88.0
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEA 250 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e 250 (371)
...+.|+++||..+ ++...+|. |. ...+-.++.|+.+++.+. .||.+|.+.. ..+
T Consensus 137 ~~~~adalel~l~~---~q~~~~~~---------~~--~df~~~~~~i~~l~~~~~-vPVivK~~g~--------g~s-- 191 (326)
T cd02811 137 EMIEADALAIHLNP---LQEAVQPE---------GD--RDFRGWLERIEELVKALS-VPVIVKEVGF--------GIS-- 191 (326)
T ss_pred HhcCCCcEEEeCcc---hHhhcCCC---------CC--cCHHHHHHHHHHHHHhcC-CCEEEEecCC--------CCC--
Confidence 34578999998743 22222232 11 012335788899998873 3899999763 122
Q ss_pred HHHHHHHHHhhcCccEEEEcCCC--ccc------CCCCC----CC--C-----chhhHhHHHhc-CCCeEeeCCC-CHHH
Q 017448 251 LGLYMAKALNKYQILYLHILEPR--LFN------AQDKL----DA--P-----PYSLLPMRKAF-DGTFIASGGY-NRDD 309 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~--~~~------~~~~~----~~--~-----~~~~~~ik~~~-~~pVi~~Ggi-t~~~ 309 (371)
.+.++.|+++|+|+|+++... ... ..... .. . ...+..+++.+ ++|||++||+ +..+
T Consensus 192 --~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~d 269 (326)
T cd02811 192 --RETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLD 269 (326)
T ss_pred --HHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHH
Confidence 357888999999999997631 000 00000 00 1 12344566666 8999999999 8999
Q ss_pred HHHHHHcCCccEEEechHhhh
Q 017448 310 GNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 310 a~~~l~~g~~D~V~~gR~~la 330 (371)
+.++|..| +|+|++||+++.
T Consensus 270 v~kal~lG-Ad~V~i~~~~L~ 289 (326)
T cd02811 270 IAKALALG-ADLVGMAGPFLK 289 (326)
T ss_pred HHHHHHhC-CCEEEEcHHHHH
Confidence 99999999 999999999875
No 63
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.70 E-value=3.4e-07 Score=84.15 Aligned_cols=143 Identities=17% Similarity=0.070 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccCcCc
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHANYME 242 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~~~~ 242 (371)
+.|+.+.++|+|.|-|.... .+.+ +.++.+.+.+|.+ .+.+.+........
T Consensus 86 e~~~~~~~~Gad~vvigs~~-----------------------l~dp----~~~~~i~~~~g~~~i~~sid~~~~~~~~~ 138 (234)
T cd04732 86 EDIERLLDLGVSRVIIGTAA-----------------------VKNP----ELVKELLKEYGGERIVVGLDAKDGKVATK 138 (234)
T ss_pred HHHHHHHHcCCCEEEECchH-----------------------HhCh----HHHHHHHHHcCCceEEEEEEeeCCEEEEC
Confidence 55566667899999754332 1113 3455555667654 23443322110100
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
.....+..+..++++.+++.|++++.++........ . ..++..++.+++.+++||+++||+ +.+++.++++.| +|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~-~-g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G-a~g 215 (234)
T cd04732 139 GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL-S-GPNFELYKELAAATGIPVIASGGVSSLDDIKALKELG-VAG 215 (234)
T ss_pred CCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc-C-CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCE
Confidence 000111223457899999999999988764433222 2 256778899999999999999999 899999999986 999
Q ss_pred EEechHhhhCCcHHHH
Q 017448 322 VAYGRSFLANPDLPKR 337 (371)
Q Consensus 322 V~~gR~~ladP~l~~k 337 (371)
|++||+++.++--+.+
T Consensus 216 v~vg~~~~~~~~~~~~ 231 (234)
T cd04732 216 VIVGKALYEGKITLEE 231 (234)
T ss_pred EEEeHHHHcCCCCHHH
Confidence 9999999999854443
No 64
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.65 E-value=3e-07 Score=85.16 Aligned_cols=81 Identities=15% Similarity=0.008 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHh
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.+..++++.+++.|+|++.++........ ...++.+++.+++.+++||+++|++ ++++++++++.+.||.|++||++
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~--~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTK--KGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCC--CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 34678899999999999999775432221 2346778889999999999999999 89999999998669999999998
Q ss_pred hhCC
Q 017448 329 LANP 332 (371)
Q Consensus 329 ladP 332 (371)
...-
T Consensus 227 ~~~~ 230 (243)
T cd04731 227 HFGE 230 (243)
T ss_pred HcCC
Confidence 8753
No 65
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.64 E-value=9.9e-07 Score=84.53 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCC--CEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE-EcCccCc
Q 017448 164 RLAGRNAIKAGF--DGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR-LSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~--DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr-l~~~~~~ 240 (371)
.+.+....++|. |.|.|.++||+ .+.+.|+|+.||+.++..+|.+. +.
T Consensus 99 ~~~~~~Lv~ag~~~d~i~iD~a~gh------------------------~~~~~e~I~~ir~~~p~~~vi~g~V~----- 149 (326)
T PRK05458 99 YDFVDQLAAEGLTPEYITIDIAHGH------------------------SDSVINMIQHIKKHLPETFVIAGNVG----- 149 (326)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc------------------------hHHHHHHHHHHHhhCCCCeEEEEecC-----
Confidence 355556667755 99999998852 24578889999999864444432 22
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCC--c--ccCCC-CCCCCch--hhHhHHHhcCCCeEeeCCC-CHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPR--L--FNAQD-KLDAPPY--SLLPMRKAFDGTFIASGGY-NRDDGNK 312 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~--~--~~~~~-~~~~~~~--~~~~ik~~~~~pVi~~Ggi-t~~~a~~ 312 (371)
+. +-++.|.++|+|++.++.+. . +.... ...++|. .+..+++.+++|||+.||+ ++.++.+
T Consensus 150 -------t~----e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~K 218 (326)
T PRK05458 150 -------TP----EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAK 218 (326)
T ss_pred -------CH----HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 22 35577888999998776332 1 11100 1222233 4677888889999999999 9999999
Q ss_pred HHHcCCccEEEechHhhhCCc
Q 017448 313 AVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~ladP~ 333 (371)
+|+.| +|+|++|++++.-.+
T Consensus 219 aLa~G-A~aV~vG~~~~~~~e 238 (326)
T PRK05458 219 SIRFG-ATMVMIGSLFAGHEE 238 (326)
T ss_pred HHHhC-CCEEEechhhcCCcc
Confidence 99998 999999999985443
No 66
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.61 E-value=7.6e-07 Score=81.23 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+.++.+.++|+|.|-+..... . +.+ | ..+.++++.+|+. ..-++.+..+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~-----------~-~p~--~-------~~~~~~i~~~~~~-~~i~vi~~v~--------- 127 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLR-----------P-RPD--G-------ETLAELVKRIKEY-PGQLLMADCS--------- 127 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCC-----------C-CCC--C-------CCHHHHHHHHHhC-CCCeEEEeCC---------
Confidence 446788899999998765431 0 110 0 2357888888886 2224544332
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEE
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLV 322 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V 322 (371)
+.++ ++.+.+.|+||+.++........ .........++.+++.+++||++.||+ ++++++++++.| +|+|
T Consensus 128 ---t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G-adgV 199 (221)
T PRK01130 128 ---TLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELG-AHAV 199 (221)
T ss_pred ---CHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC-CCEE
Confidence 2332 35788899999976433222111 012234567888999999999999999 899999999998 9999
Q ss_pred EechHhhhCCcHHHHH
Q 017448 323 AYGRSFLANPDLPKRF 338 (371)
Q Consensus 323 ~~gR~~ladP~l~~k~ 338 (371)
++|++++ +|+++.+.
T Consensus 200 ~iGsai~-~~~~~~~~ 214 (221)
T PRK01130 200 VVGGAIT-RPEEITKW 214 (221)
T ss_pred EEchHhc-CCHHHHHH
Confidence 9999854 57666553
No 67
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.61 E-value=7e-07 Score=82.08 Aligned_cols=75 Identities=16% Similarity=0.001 Sum_probs=61.3
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
..++++.++++|+|++.++........ ...++..++.+++.+++||+++||+ +++++++++.+..+|.|++|++|
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~--~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTM--KGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCc--CCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 568999999999999999874332222 2346788899999999999999999 89999996666669999999986
No 68
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.60 E-value=2.1e-07 Score=86.15 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 251 LGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+..++++.+++.|++.++++....... ....+...++.+++.+++||+++||+ +.++++++++.| ||.|++||+++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~--~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~~ 104 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSE--GRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAAV 104 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccc--cCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchhh
Confidence 356799999999999998877653322 23446778899999999999999999 899999999988 99999999999
Q ss_pred hCCcHHHHHHhC
Q 017448 330 ANPDLPKRFELN 341 (371)
Q Consensus 330 adP~l~~k~~~g 341 (371)
.||+++.++.+.
T Consensus 105 ~~p~~~~~i~~~ 116 (243)
T cd04731 105 ENPELIREIAKR 116 (243)
T ss_pred hChHHHHHHHHH
Confidence 999999998774
No 69
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.59 E-value=6e-07 Score=82.45 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.+-++..+..... . ..++..++.+++.+++||+++||+ +++++.++++.|.||.|++||+++.
T Consensus 148 ~~e~~~~~~~~g~~~ii~~~~~~~g~~-~-G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 148 AEDLAKRFEDAGVKAIIYTDISRDGTL-S-GPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeeecCcCCc-C-CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 356899999999998777655433333 2 256788899999999999999999 9999999999988999999999876
Q ss_pred C
Q 017448 331 N 331 (371)
Q Consensus 331 d 331 (371)
.
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 70
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.58 E-value=2.9e-06 Score=82.94 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHh
Q 017448 211 CRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLP 290 (371)
Q Consensus 211 ~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ 290 (371)
..++.++|+++|++ + -.+.+|+++ .++.++++.+.++|+|+|.+|.++..+.+.....++..+..
T Consensus 117 p~l~~~iv~~~~~~-~-V~v~vr~~~-------------~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~ 181 (368)
T PRK08649 117 PELITERIAEIRDA-G-VIVAVSLSP-------------QRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKE 181 (368)
T ss_pred HHHHHHHHHHHHhC-e-EEEEEecCC-------------cCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHH
Confidence 56789999999995 2 245555543 12457899999999999999887644333111113444555
Q ss_pred HHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHh
Q 017448 291 MRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 291 ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
+++.+++|||+ |++ |.+++.++++.| ||.|++||+-
T Consensus 182 ~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G~ 218 (368)
T PRK08649 182 FIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIGP 218 (368)
T ss_pred HHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 66667999988 666 999999999977 9999999773
No 71
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.54 E-value=4.1e-07 Score=83.58 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+.+.|+|.++|+.-+.... ....+...++.+++.+++||+++|++ ++++++++++.| ||.|++|+.++.
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~~~~--~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l~ 107 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDGAKG--GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCcccc--CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHHh
Confidence 45689999999999999986543211 23456778899999999999999999 899999999998 999999999999
Q ss_pred CCcHHHHHHhCC
Q 017448 331 NPDLPKRFELNA 342 (371)
Q Consensus 331 dP~l~~k~~~g~ 342 (371)
||++++++.+.-
T Consensus 108 dp~~~~~i~~~~ 119 (234)
T cd04732 108 NPELVKELLKEY 119 (234)
T ss_pred ChHHHHHHHHHc
Confidence 999999988863
No 72
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.51 E-value=1.6e-06 Score=84.79 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
++++.|+.+.+.||+.++|+.|.. .+.-.+.|++||+++|++ .|.|..|.
T Consensus 141 ~~~~~a~~~~~~Gf~~~Kikvg~~-------------------------~~~d~~~v~~vRe~~G~~~~l~vDaN~---- 191 (352)
T cd03328 141 RLREQLSGWVAQGIPRVKMKIGRD-------------------------PRRDPDRVAAARRAIGPDAELFVDANG---- 191 (352)
T ss_pred HHHHHHHHHHHCCCCEEEeecCCC-------------------------HHHHHHHHHHHHHHcCCCCeEEEECCC----
Confidence 456666777789999999976421 133488999999999986 46555543
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh--cCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA--FDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~--~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
..+.++++.+++.|++.++.|++ +| -+..+....+.+++. +++||.+...+ +..++.++++.+
T Consensus 192 -----~~~~~~A~~~~~~l~~~~~~~~E--eP-------~~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~ 257 (352)
T cd03328 192 -----AYSRKQALALARAFADEGVTWFE--EP-------VSSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAH 257 (352)
T ss_pred -----CCCHHHHHHHHHHHHHhCcchhh--CC-------CChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcC
Confidence 34577899999999999998887 44 223355677889999 88999988877 999999999999
Q ss_pred CccEEEe
Q 017448 318 YTDLVAY 324 (371)
Q Consensus 318 ~~D~V~~ 324 (371)
.+|+|.+
T Consensus 258 a~div~~ 264 (352)
T cd03328 258 AVDVLQA 264 (352)
T ss_pred CCCEEec
Confidence 9999863
No 73
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.51 E-value=1.5e-06 Score=79.74 Aligned_cols=77 Identities=18% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.+.++..+..... ...++..++.+++.+++||+++||+ +.++++++++.| +|.|++|++++.
T Consensus 147 ~~~~~~~~~~~g~~~ii~~~~~~~g~~--~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G-adgv~ig~a~~~ 223 (230)
T TIGR00007 147 LEELAKRLEELGLEGIIYTDISRDGTL--SGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLG-VYGVIVGKALYE 223 (230)
T ss_pred HHHHHHHHHhCCCCEEEEEeecCCCCc--CCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEeHHHHc
Confidence 356899999999999888765433322 2346778888999999999999999 899999999877 999999999987
Q ss_pred C
Q 017448 331 N 331 (371)
Q Consensus 331 d 331 (371)
+
T Consensus 224 ~ 224 (230)
T TIGR00007 224 G 224 (230)
T ss_pred C
Confidence 5
No 74
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=98.50 E-value=9.4e-06 Score=73.12 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=75.8
Q ss_pred HHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC--CCCCCchhhHhHHHh
Q 017448 218 VEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD--KLDAPPYSLLPMRKA 294 (371)
Q Consensus 218 v~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~--~~~~~~~~~~~ik~~ 294 (371)
+...|+.+++. .||+-.+ +.+ -+.+.++.|+||+-+. +-+....+ .++.-+..++++++.
T Consensus 94 ~~~ar~~~~~~~iIG~S~h------------~~e----ea~~A~~~g~DYv~~G-pifpT~tK~~~~~~G~~~l~~~~~~ 156 (211)
T COG0352 94 LAEARELLGPGLIIGLSTH------------DLE----EALEAEELGADYVGLG-PIFPTSTKPDAPPLGLEGLREIREL 156 (211)
T ss_pred hHHHHHhcCCCCEEEeecC------------CHH----HHHHHHhcCCCEEEEC-CcCCCCCCCCCCccCHHHHHHHHHh
Confidence 45566777776 6776332 122 3456677889999873 33332221 223344567788898
Q ss_pred cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 295 FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 295 ~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
.++|+++-||++++.+.++++.| +|+|++-|+++..+|....+++
T Consensus 157 ~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 157 VNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred CCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHHH
Confidence 89999999999999999999999 9999999999999887665443
No 75
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.50 E-value=1.1e-06 Score=82.18 Aligned_cols=84 Identities=20% Similarity=0.064 Sum_probs=67.3
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.+-++........ ..+++..++.+++.+++|||++||+ +.+++.+++++..||.|.+|++|.-
T Consensus 154 ~~e~~~~~~~~g~~~ii~~~i~~~G~~--~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 154 PLELAKEYEALGAGEILLNSIDRDGTM--KGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEccCCCCCc--CCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 457889999999999988876544433 2247788899999999999999999 8999999995445999999999988
Q ss_pred CCcHHHH
Q 017448 331 NPDLPKR 337 (371)
Q Consensus 331 dP~l~~k 337 (371)
.-+-+.+
T Consensus 232 ~~~~~~~ 238 (258)
T PRK01033 232 KGVYKAV 238 (258)
T ss_pred Ccccccc
Confidence 7333333
No 76
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.49 E-value=5.9e-07 Score=83.73 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.++++........ ...++..++.+++.+++||+++||+ +.++++++++.| ||.|++|+.++.
T Consensus 32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~--~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l~ 108 (253)
T PRK02083 32 PVELAKRYNEEGADELVFLDITASSEG--RDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccc--CcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHhh
Confidence 346888899999999999887643222 2456788899999999999999999 899999999987 999999999999
Q ss_pred CCcHHHHHHhCC
Q 017448 331 NPDLPKRFELNA 342 (371)
Q Consensus 331 dP~l~~k~~~g~ 342 (371)
||++++++.+.-
T Consensus 109 ~p~~~~ei~~~~ 120 (253)
T PRK02083 109 NPELISEAADRF 120 (253)
T ss_pred CcHHHHHHHHHc
Confidence 999999988863
No 77
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.49 E-value=3.2e-06 Score=82.24 Aligned_cols=128 Identities=16% Similarity=0.235 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+++++.|+.+.+.||..++|+.|.| + .+.+ ...+.-.+.|++||+++|++ .|.+..|.
T Consensus 122 ~~~~~~a~~~~~~Gf~~~Kikvg~~--------~-~~~~---------~~~~~d~~~v~avr~~~g~~~~l~vDan~--- 180 (341)
T cd03327 122 DELPDEAKEYLKEGYRGMKMRFGYG--------P-SDGH---------AGLRKNVELVRAIREAVGYDVDLMLDCYM--- 180 (341)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC--------C-Ccch---------HHHHHHHHHHHHHHHHhCCCCcEEEECCC---
Confidence 3456777778889999999987653 1 0011 11345689999999999986 45554443
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
..+.++++.+++.|++.++.|++ +|. +..+....+.+++.+++||.+...+ ++.++.++++.+.
T Consensus 181 ------~~~~~~A~~~~~~l~~~~~~~iE--eP~-------~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a 245 (341)
T cd03327 181 ------SWNLNYAIKMARALEKYELRWIE--EPL-------IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRA 245 (341)
T ss_pred ------CCCHHHHHHHHHHhhhcCCcccc--CCC-------CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCC
Confidence 33567899999999999998887 542 2334566788999999999888887 8999999999999
Q ss_pred ccEEEe
Q 017448 319 TDLVAY 324 (371)
Q Consensus 319 ~D~V~~ 324 (371)
+|+|.+
T Consensus 246 ~d~i~~ 251 (341)
T cd03327 246 VDILQP 251 (341)
T ss_pred CCEEec
Confidence 999863
No 78
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.49 E-value=1.2e-06 Score=85.75 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
++++.|+...+.||..++|+.|.. + .+--.+.|++||+++|++ .|.+..|.
T Consensus 144 ~~~~~a~~~~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~air~~~g~~~~l~vDaN~---- 195 (355)
T cd03321 144 LATERAVTAAEEGFHAVKTKIGYP--------------------T----ADEDLAVVRSIRQAVGDGVGLMVDYNQ---- 195 (355)
T ss_pred HHHHHHHHHHHhhhHHHhhhcCCC--------------------C----hHhHHHHHHHHHHhhCCCCEEEEeCCC----
Confidence 456667777788999999986520 1 122478899999999986 45554443
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
..+.++++.+++.|++.+++||+ +|. ...+....+.+++.+++||.+...+ ++.++.++++.+.+
T Consensus 196 -----~~~~~~A~~~~~~l~~~~i~~iE--eP~-------~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~ 261 (355)
T cd03321 196 -----SLTVPEAIERGQALDQEGLTWIE--EPT-------LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGAC 261 (355)
T ss_pred -----CcCHHHHHHHHHHHHcCCCCEEE--CCC-------CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCC
Confidence 33567899999999999999998 442 2335567788999999999887777 89999999999999
Q ss_pred cEEEe
Q 017448 320 DLVAY 324 (371)
Q Consensus 320 D~V~~ 324 (371)
|.|.+
T Consensus 262 d~i~~ 266 (355)
T cd03321 262 DLVMP 266 (355)
T ss_pred CeEec
Confidence 98865
No 79
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.48 E-value=2.5e-05 Score=75.85 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCEEecccccchHH-------hhhcCCc----ccCCCCCCCCc-hhhh------hHHHHHHHHHHHHHh
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLI-------DQFMKDQ----VNDRTDQYGGS-LENR------CRFALEIVEAVVNEI 225 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl-------~qFlSp~----~N~R~D~yGgs-~enR------~r~~~eiv~avR~~v 225 (371)
.+..++|+++||+++-|+.....+- +.|-.|. .|.. +.+.++ .... .....+.|+.+|+.+
T Consensus 134 ~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 212 (344)
T cd02922 134 EELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKK-TKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT 212 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccc-cccccchHHHHHhhccCCCCCHHHHHHHHHhc
Confidence 3555788899999999987663221 1111110 1100 001111 1111 124568899999988
Q ss_pred CCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh---c--CCCeE
Q 017448 226 GAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA---F--DGTFI 300 (371)
Q Consensus 226 g~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~---~--~~pVi 300 (371)
+ -||.||--. +. +-++.+.+.|+|.|.|+...-.... ....-...+..+++. + ++|||
T Consensus 213 ~-~PvivKgv~-----------~~----~dA~~a~~~G~d~I~vsnhgG~~~d-~~~~~~~~L~~i~~~~~~~~~~~~vi 275 (344)
T cd02922 213 K-LPIVLKGVQ-----------TV----EDAVLAAEYGVDGIVLSNHGGRQLD-TAPAPIEVLLEIRKHCPEVFDKIEVY 275 (344)
T ss_pred C-CcEEEEcCC-----------CH----HHHHHHHHcCCCEEEEECCCcccCC-CCCCHHHHHHHHHHHHHHhCCCceEE
Confidence 4 378888221 22 3556788999999999763211111 111112234445553 2 48999
Q ss_pred eeCCC-CHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 301 ASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 301 ~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
+.||+ +..|+.++|.-| +|+|++||+++..+.
T Consensus 276 ~~GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~ 308 (344)
T cd02922 276 VDGGVRRGTDVLKALCLG-AKAVGLGRPFLYALS 308 (344)
T ss_pred EeCCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence 99999 899999999999 999999999999886
No 80
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.48 E-value=2.5e-06 Score=79.57 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=93.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccC--
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHAN-- 239 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~-- 239 (371)
.+.++.+.++|+|.|-|...- .+.+ ++++.+.+.+|.+ .+++.+.....
T Consensus 86 ~~d~~~~~~~Ga~~vivgt~~-----------------------~~~p----~~~~~~~~~~~~~~iv~slD~~~g~~~~ 138 (254)
T TIGR00735 86 IEDVDKLLRAGADKVSINTAA-----------------------VKNP----ELIYELADRFGSQCIVVAIDAKRVYVNS 138 (254)
T ss_pred HHHHHHHHHcCCCEEEEChhH-----------------------hhCh----HHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 466777788999999874221 1112 4455556666744 34444332110
Q ss_pred ---cC---cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHH
Q 017448 240 ---YM---EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNK 312 (371)
Q Consensus 240 ---~~---~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~ 312 (371)
+. .........+..++++.+++.|++.+.++....... ....++.+++.+++.+++||+++|++ +++++++
T Consensus 139 ~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~--~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~ 216 (254)
T TIGR00735 139 YCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT--KSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYE 216 (254)
T ss_pred CccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC--CCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHH
Confidence 00 000111233457899999999999999876432211 23456788899999999999999999 8999999
Q ss_pred HHHcCCccEEEechHhhhC
Q 017448 313 AVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~lad 331 (371)
+++.|.+|+|++|+++...
T Consensus 217 ~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 217 AFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHcCCcceeeEhHHHhCC
Confidence 9999999999999997653
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.48 E-value=1.8e-06 Score=78.74 Aligned_cols=133 Identities=18% Similarity=0.138 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++.+.++|.|.|.+..... .+.+ + ..+.++++++++.. +.++.+...
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~------------~~p~--~-------~~~~~~i~~~~~~g-~~~iiv~v~-------- 131 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDR------------PRPD--G-------ETLAELIKRIHEEY-NCLLMADIS-------- 131 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCC------------CCCC--C-------cCHHHHHHHHHHHh-CCeEEEECC--------
Confidence 3466788899999998865431 0111 0 24578888888866 334444222
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
+.++ +..+.++|+||+.+......... .........++.+++.+++||+++||+ +++++.++++.| +|+
T Consensus 132 ----t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G-adg 202 (219)
T cd04729 132 ----TLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELG-ADA 202 (219)
T ss_pred ----CHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC-CCE
Confidence 2332 35677889999965322111110 012234567888999999999999999 899999999999 999
Q ss_pred EEechHhhhCCcHH
Q 017448 322 VAYGRSFLANPDLP 335 (371)
Q Consensus 322 V~~gR~~ladP~l~ 335 (371)
|++|++++...+..
T Consensus 203 V~vGsal~~~~~~~ 216 (219)
T cd04729 203 VVVGSAITRPEHIT 216 (219)
T ss_pred EEEchHHhChHhHh
Confidence 99999976655543
No 82
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=98.48 E-value=2.3e-06 Score=84.22 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+.++++++...+.||+.++|+.+++.. ..-++.|++||+++|++ .|.|..|.
T Consensus 145 e~~~~~~~~~~~~G~~~~Klk~g~~~~------------------------~~d~~~v~avRe~~g~~~~l~iDan~--- 197 (372)
T COG4948 145 EMAAEAARALVELGFKALKLKVGVGDG------------------------DEDLERVRALREAVGDDVRLMVDANG--- 197 (372)
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCch------------------------HHHHHHHHHHHHHhCCCceEEEeCCC---
Confidence 456777888888999999999988411 14589999999999975 56665554
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
..+.++++.+++.|++.++.|++ +| -...+....+.+++.+++||.+...+ +..++.++++.|.
T Consensus 198 ------~~~~~~A~~~~~~l~~~~l~~iE--eP-------~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a 262 (372)
T COG4948 198 ------GWTLEEAIRLARALEEYGLEWIE--EP-------LPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGA 262 (372)
T ss_pred ------CcCHHHHHHHHHHhcccCcceEE--CC-------CCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCC
Confidence 34567789999999999999998 54 23345667888999888999988887 9999999999999
Q ss_pred ccEEEe
Q 017448 319 TDLVAY 324 (371)
Q Consensus 319 ~D~V~~ 324 (371)
+|+|.+
T Consensus 263 ~div~~ 268 (372)
T COG4948 263 VDIVQP 268 (372)
T ss_pred CCeecC
Confidence 999875
No 83
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=98.46 E-value=2.3e-06 Score=84.49 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
++++.|+.+.+.||..++|+.|. .+ .+.-.+.|++||+++|++ .|.|..|.
T Consensus 163 ~~~~~a~~~~~~Gf~~~Kikvg~--------------------~~----~~~di~~v~avRe~~G~~~~l~vDaN~---- 214 (385)
T cd03326 163 RLRDEMRRYLDRGYTVVKIKIGG--------------------AP----LDEDLRRIEAALDVLGDGARLAVDANG---- 214 (385)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC--------------------CC----HHHHHHHHHHHHHhcCCCCeEEEECCC----
Confidence 35566667778999999998652 01 233478999999999986 46665553
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
..+.++++.+++.|++.++.|++ +| -+..+....+.+++.+++||.+...+ ++.++.++++.+.+
T Consensus 215 -----~w~~~~A~~~~~~l~~~~~~~iE--eP-------~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~ 280 (385)
T cd03326 215 -----RFDLETAIAYAKALAPYGLRWYE--EP-------GDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGM 280 (385)
T ss_pred -----CCCHHHHHHHHHHhhCcCCCEEE--CC-------CCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCc
Confidence 33577899999999999999998 54 22345667788999999999998887 99999999999877
Q ss_pred ----cEEEe
Q 017448 320 ----DLVAY 324 (371)
Q Consensus 320 ----D~V~~ 324 (371)
|+|.+
T Consensus 281 ~~~~div~~ 289 (385)
T cd03326 281 RPDRDVLQF 289 (385)
T ss_pred cccCCEEEe
Confidence 88863
No 84
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.44 E-value=1e-05 Score=71.80 Aligned_cols=133 Identities=17% Similarity=0.070 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
++..+.++.|+++|+|+|.+....++..++ +.+.+.+.+++|+++++.+ ++.+...+..
T Consensus 65 ~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~- 124 (201)
T cd00945 65 EVKVAEVEEAIDLGADEIDVVINIGSLKEG-------------------DWEEVLEEIAAVVEAADGGLPLKVILETRG- 124 (201)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccHHHHhCC-------------------CHHHHHHHHHHHHHHhcCCceEEEEEECCC-
Confidence 456788999999999999997655433321 3567889999999987323 7787777632
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCC-CHHHHHHHHHc
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGY-NRDDGNKAVAE 316 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~ 316 (371)
..+.++..++++.+.+.|++++..+.+... ...+....+.+++.+ +.||++.|++ +++.+.+++..
T Consensus 125 ------~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~-----~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~ 193 (201)
T cd00945 125 ------LKTADEIAKAARIAAEAGADFIKTSTGFGG-----GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA 193 (201)
T ss_pred ------CCCHHHHHHHHHHHHHhCCCEEEeCCCCCC-----CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh
Confidence 124556667777778889999987654321 223456677788887 5689999999 69999999999
Q ss_pred CCccEEEec
Q 017448 317 NYTDLVAYG 325 (371)
Q Consensus 317 g~~D~V~~g 325 (371)
| +|.+++|
T Consensus 194 G-a~g~~~g 201 (201)
T cd00945 194 G-ADGIGTS 201 (201)
T ss_pred c-cceeecC
Confidence 8 9998875
No 85
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.43 E-value=1.9e-05 Score=72.00 Aligned_cols=105 Identities=11% Similarity=0.073 Sum_probs=72.1
Q ss_pred HHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhc
Q 017448 218 VEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAF 295 (371)
Q Consensus 218 v~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~ 295 (371)
+..+|+..|++ .||+ +.. . ..++ +.+..+.|+||+.++. -++.... ..+.....++++++.+
T Consensus 100 ~~~~r~~~~~~~iiG~--s~~--------~-s~~~----a~~A~~~gaDYv~~Gp-v~t~tK~~~~p~gl~~l~~~~~~~ 163 (221)
T PRK06512 100 LAEAIEKHAPKMIVGF--GNL--------R-DRHG----AMEIGELRPDYLFFGK-LGADNKPEAHPRNLSLAEWWAEMI 163 (221)
T ss_pred HHHHHHhcCCCCEEEe--cCC--------C-CHHH----HHHhhhcCCCEEEECC-CCCCCCCCCCCCChHHHHHHHHhC
Confidence 46777777766 5665 210 1 1222 2234568999999853 2321110 1122345667788889
Q ss_pred CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 296 DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 296 ~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
++||++.|||+.+++.++++.| +|+|++-++++..+|....++
T Consensus 164 ~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 164 EIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred CCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHHH
Confidence 9999999999999999999999 999999999998888655444
No 86
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.40 E-value=6.3e-06 Score=80.01 Aligned_cols=102 Identities=19% Similarity=0.036 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 213 FALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 213 ~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
+.-+.|+.+|+.++ .||.+|--. +. +.++.+.+.|+|+|.|+...-.+.. ..+.....+.+|+
T Consensus 208 ~~~~~l~~lr~~~~-~PvivKgv~-----------~~----~dA~~a~~~G~d~I~vsnhGGr~ld-~~~~~~~~l~~i~ 270 (351)
T cd04737 208 LSPADIEFIAKISG-LPVIVKGIQ-----------SP----EDADVAINAGADGIWVSNHGGRQLD-GGPASFDSLPEIA 270 (351)
T ss_pred CCHHHHHHHHHHhC-CcEEEecCC-----------CH----HHHHHHHHcCCCEEEEeCCCCccCC-CCchHHHHHHHHH
Confidence 45688899999885 388888311 12 3567788899999999532111111 1222235567788
Q ss_pred Hhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 293 KAF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 293 ~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
+++ ++||++.||+ +..++.++|+-| +|+|++||+++-..
T Consensus 271 ~a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l 312 (351)
T cd04737 271 EAVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL 312 (351)
T ss_pred HHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 877 5899999999 899999999988 99999999999764
No 87
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.39 E-value=1.5e-06 Score=81.00 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|+++++++.-..... ....+...++.+++.+++||+++||+ +.+++++++..| +|.|.+|+.++.
T Consensus 32 p~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G-a~~vivgt~~~~ 108 (254)
T TIGR00735 32 PVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAG-ADKVSINTAAVK 108 (254)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhh
Confidence 34689999999999999987543211 23356678889999999999999999 899999999988 999999999999
Q ss_pred CCcHHHHHHhC
Q 017448 331 NPDLPKRFELN 341 (371)
Q Consensus 331 dP~l~~k~~~g 341 (371)
||++++++.+.
T Consensus 109 ~p~~~~~~~~~ 119 (254)
T TIGR00735 109 NPELIYELADR 119 (254)
T ss_pred ChHHHHHHHHH
Confidence 99999998763
No 88
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.37 E-value=5.6e-05 Score=71.34 Aligned_cols=196 Identities=14% Similarity=0.087 Sum_probs=119.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccC-CCC----CCC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTY-GFQ----PNG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~-~~~----~~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+......-.+ ... ... ...--|-.+.++ .. -+
T Consensus 28 ~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlD---------H~--~~---------- 86 (281)
T PRK06806 28 MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFD---------HG--MT---------- 86 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECC---------CC--CC----------
Confidence 4577888999999999999999753321000 000 000 000001111111 11 11
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccE---EEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVG---IRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~---vrl~~~~~ 239 (371)
.+.+++|.++||+-|++-+-+ -+.+...++..++++-+++. |- +|. ..+...++
T Consensus 87 -~e~i~~Al~~G~tsVm~d~s~--------------------~~~~eni~~t~~v~~~a~~~-gv-~veaE~ghlG~~d~ 143 (281)
T PRK06806 87 -FEKIKEALEIGFTSVMFDGSH--------------------LPLEENIQKTKEIVELAKQY-GA-TVEAEIGRVGGSED 143 (281)
T ss_pred -HHHHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-eEEEEeeeECCccC
Confidence 245566788899999987654 13466677888877777664 21 222 24443222
Q ss_pred cCcC-CC-CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhcCCCeEeeC--CCCHHHHHHHH
Q 017448 240 YMEA-QD-SNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASG--GYNRDDGNKAV 314 (371)
Q Consensus 240 ~~~~-~~-~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~G--git~~~a~~~l 314 (371)
..+. +. -.+.+++.+++ ++.|+|||.++-++....++ .+.-..+.+++|++.+++|++.-| |++.++..+++
T Consensus 144 ~~~~~g~s~t~~eea~~f~---~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i 220 (281)
T PRK06806 144 GSEDIEMLLTSTTEAKRFA---EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCI 220 (281)
T ss_pred CcccccceeCCHHHHHHHH---HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 1111 10 12344443333 35699999997666443331 223345678899999999999999 89999999999
Q ss_pred HcCCccEEEechHhhhCC
Q 017448 315 AENYTDLVAYGRSFLANP 332 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP 332 (371)
+.| ++.|.+.+.+..+|
T Consensus 221 ~~G-~~kinv~T~i~~a~ 237 (281)
T PRK06806 221 QHG-IRKINVATATFNSV 237 (281)
T ss_pred HcC-CcEEEEhHHHHHHH
Confidence 999 99999999999854
No 89
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.37 E-value=8.7e-06 Score=81.14 Aligned_cols=120 Identities=15% Similarity=0.162 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
++++.|+...+.||..++|+.|. + .+.-.+.|++||+++|++ .|.|..|.
T Consensus 199 ~~~~~a~~~~~~Gf~~~KiKvg~---------------------~----~~~d~~~v~avRe~vG~~~~L~vDaN~---- 249 (415)
T cd03324 199 KLRRLCKEALAQGFTHFKLKVGA---------------------D----LEDDIRRCRLAREVIGPDNKLMIDANQ---- 249 (415)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCC---------------------C----HHHHHHHHHHHHHhcCCCCeEEEECCC----
Confidence 45666777777899999997641 1 233478999999999986 46555543
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc---CCCeEeeCCC-CHHHHHHHHHc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF---DGTFIASGGY-NRDDGNKAVAE 316 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pVi~~Ggi-t~~~a~~~l~~ 316 (371)
..+.++++.+++.|++.++.|++ +|- ...+....+.+++.+ ++||.+...+ +..++.++++.
T Consensus 250 -----~w~~~~A~~~~~~L~~~~l~~iE--EP~-------~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~ 315 (415)
T cd03324 250 -----RWDVPEAIEWVKQLAEFKPWWIE--EPT-------SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA 315 (415)
T ss_pred -----CCCHHHHHHHHHHhhccCCCEEE--CCC-------CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc
Confidence 33567899999999999999998 542 233456677788888 5898887777 89999999999
Q ss_pred CCccEEEe
Q 017448 317 NYTDLVAY 324 (371)
Q Consensus 317 g~~D~V~~ 324 (371)
+.+|++.+
T Consensus 316 ~a~dil~~ 323 (415)
T cd03324 316 GAIDVVQI 323 (415)
T ss_pred CCCCEEEe
Confidence 99998863
No 90
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.36 E-value=1.7e-05 Score=71.23 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=59.8
Q ss_pred HHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 256 AKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 256 a~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
++++++.|+||+.++. .+....++ ....+..++.+++.+++||++.||++++++.++++.| +|+|++++++...++
T Consensus 108 a~~a~~~Gadyi~~g~-v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~ 185 (201)
T PRK07695 108 AIQAEKNGADYVVYGH-VFPTDCKKGVPARGLEELSDIARALSIPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSAN 185 (201)
T ss_pred HHHHHHcCCCEEEECC-CCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCC
Confidence 4567788999996532 22111101 1223456777888889999999999999999999988 999999999997666
Q ss_pred HHHHHH
Q 017448 334 LPKRFE 339 (371)
Q Consensus 334 l~~k~~ 339 (371)
....++
T Consensus 186 p~~~~~ 191 (201)
T PRK07695 186 PYSKAK 191 (201)
T ss_pred HHHHHH
Confidence 554443
No 91
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.34 E-value=1.2e-05 Score=76.95 Aligned_cols=124 Identities=14% Similarity=0.062 Sum_probs=87.4
Q ss_pred HHHHcC--CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 169 NAIKAG--FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 169 ~a~~aG--~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
...++| .|.|-|..+||+ .+.+++.|+.+|+.++. +..++=+.
T Consensus 101 ~lv~a~~~~d~i~~D~ahg~------------------------s~~~~~~i~~i~~~~p~-~~vi~GnV---------- 145 (321)
T TIGR01306 101 QLAEEALTPEYITIDIAHGH------------------------SNSVINMIKHIKTHLPD-SFVIAGNV---------- 145 (321)
T ss_pred HHHhcCCCCCEEEEeCccCc------------------------hHHHHHHHHHHHHhCCC-CEEEEecC----------
Confidence 335567 699999999974 45679999999998853 32221111
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCC----CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPR---LFNAQD----KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~----~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
. ..+.++.|.++|+|.|.++.+. .+.... .+.+....+..+++.+++|||+.||+ +..|+.++|+-|
T Consensus 146 ~----t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G- 220 (321)
T TIGR01306 146 G----TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIRFG- 220 (321)
T ss_pred C----CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC-
Confidence 1 2357788889999999887432 111100 11122345677888889999999999 899999999998
Q ss_pred ccEEEechHhhhCC
Q 017448 319 TDLVAYGRSFLANP 332 (371)
Q Consensus 319 ~D~V~~gR~~ladP 332 (371)
+|+||+||.|-.--
T Consensus 221 Ad~Vmig~~~ag~~ 234 (321)
T TIGR01306 221 ASMVMIGSLFAGHE 234 (321)
T ss_pred CCEEeechhhcCcc
Confidence 99999999986544
No 92
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.34 E-value=6.9e-06 Score=79.96 Aligned_cols=98 Identities=21% Similarity=0.096 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA 294 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~ 294 (371)
-+-|+.+|+.++ -||.||= . . . .+.++.+.++|+|+|.|+.-.-.+.. .....+..+.+++++
T Consensus 217 w~~i~~l~~~~~-~PvivKG-v---------~-~----~eda~~a~~~Gvd~I~VS~HGGrq~~-~~~a~~~~L~ei~~a 279 (367)
T TIGR02708 217 PRDIEEIAGYSG-LPVYVKG-P---------Q-C----PEDADRALKAGASGIWVTNHGGRQLD-GGPAAFDSLQEVAEA 279 (367)
T ss_pred HHHHHHHHHhcC-CCEEEeC-C---------C-C----HHHHHHHHHcCcCEEEECCcCccCCC-CCCcHHHHHHHHHHH
Confidence 467888988875 3788882 1 1 1 34677788999998877543211112 222335667788887
Q ss_pred cC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 295 FD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 295 ~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
++ +|||+.||| +..|+.++|+-| +|+|++||+++.
T Consensus 280 v~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~ 317 (367)
T TIGR02708 280 VDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIY 317 (367)
T ss_pred hCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 74 899999999 899999999988 999999999775
No 93
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=98.31 E-value=1.6e-05 Score=79.22 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhc--CCc----ccCCCCC---CCC--chhhhhHHHHHHHHHHHHHhCCc-c
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFM--KDQ----VNDRTDQ---YGG--SLENRCRFALEIVEAVVNEIGAE-R 229 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFl--Sp~----~N~R~D~---yGg--s~enR~r~~~eiv~avR~~vg~~-~ 229 (371)
++++.|+.+.+.||..++|+.|..-+ .... ++- .+.-.|. +.+ ..+.-.+...+.|++||+++|++ .
T Consensus 130 ~~~~~a~~~~~~Gf~~~KiKvg~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~ 208 (404)
T PRK15072 130 ELLDDVARHLELGYKAIRVQCGVPGL-KTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLH 208 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCc-ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCce
Confidence 34566677778899999999763100 0000 000 0000010 000 01223466689999999999976 4
Q ss_pred cEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHH
Q 017448 230 VGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRD 308 (371)
Q Consensus 230 i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~ 308 (371)
|.+..|. ..+.+++..+++.|++.++.|++ +|. +..+....+.+++.+++||.+...+ ++.
T Consensus 209 l~vDaN~---------~w~~~~A~~~~~~l~~~~l~~iE--eP~-------~~~d~~~~~~L~~~~~iPIa~dEs~~~~~ 270 (404)
T PRK15072 209 LLHDVHH---------RLTPIEAARLGKSLEPYRLFWLE--DPT-------PAENQEAFRLIRQHTTTPLAVGEVFNSIW 270 (404)
T ss_pred EEEECCC---------CCCHHHHHHHHHhccccCCcEEE--CCC-------CccCHHHHHHHHhcCCCCEEeCcCccCHH
Confidence 5554443 34678899999999999999998 542 2234566778999999999888877 899
Q ss_pred HHHHHHHcCCccEEEe
Q 017448 309 DGNKAVAENYTDLVAY 324 (371)
Q Consensus 309 ~a~~~l~~g~~D~V~~ 324 (371)
++.++++.+.+|+|.+
T Consensus 271 ~~~~li~~~a~dii~~ 286 (404)
T PRK15072 271 DCKQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHHHcCCCCEEec
Confidence 9999999999999874
No 94
>PRK14017 galactonate dehydratase; Provisional
Probab=98.30 E-value=1.5e-05 Score=78.85 Aligned_cols=129 Identities=19% Similarity=0.303 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
++++.++.+.+.||..++|+.+.. ..+. ++ ..-...-.+.|+++|+++|++ .|.+.-|.
T Consensus 127 ~~~~~a~~~~~~Gf~~~KiKv~~~-----------~~~~---~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN~---- 186 (382)
T PRK14017 127 DVAEAARARVERGFTAVKMNGTEE-----------LQYI---DS--PRKVDAAVARVAAVREAVGPEIGIGVDFHG---- 186 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcCC-----------cccc---cc--HHHHHHHHHHHHHHHHHhCCCCeEEEECCC----
Confidence 355666777788999999986421 0011 11 011344589999999999976 45554443
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
..+.+++..+++.|++.++.|++ +| -...+....+.+++.+++||.+...+ ++.++.++++.+.+
T Consensus 187 -----~w~~~~A~~~~~~l~~~~~~~iE--eP-------~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~ 252 (382)
T PRK14017 187 -----RVHKPMAKVLAKELEPYRPMFIE--EP-------VLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGV 252 (382)
T ss_pred -----CCCHHHHHHHHHhhcccCCCeEE--CC-------CCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 33567899999999999999998 54 12334567788999999999888887 89999999999999
Q ss_pred cEEEe
Q 017448 320 DLVAY 324 (371)
Q Consensus 320 D~V~~ 324 (371)
|+|.+
T Consensus 253 d~v~~ 257 (382)
T PRK14017 253 DIIQP 257 (382)
T ss_pred CeEec
Confidence 99864
No 95
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=98.28 E-value=0.00012 Score=69.61 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=119.4
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCC---------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ---------PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQI 159 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~---------~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~i 159 (371)
.+..+.+++++.+.++++++|++.....-...+. ......--|-.+.++ +. +
T Consensus 28 ~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLD-----------H~-~------- 88 (293)
T PRK07315 28 LEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLD-----------HG-H------- 88 (293)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECC-----------CC-C-------
Confidence 4677889999999999999999753211000000 000000001111111 11 2
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc--
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH-- 237 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~-- 237 (371)
.+.++.|.++||+-|.+-+.+ -+++...+...++++-.++. |- ++-..+..-
T Consensus 89 ----~~~i~~ai~~GftSVm~d~S~--------------------l~~eEni~~t~~v~~~a~~~-gv-~vE~ElG~i~g 142 (293)
T PRK07315 89 ----YEDALECIEVGYTSIMFDGSH--------------------LPVEENLKLAKEVVEKAHAK-GI-SVEAEVGTIGG 142 (293)
T ss_pred ----HHHHHHHHHcCCCEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CC-EEEEecCcccC
Confidence 234457778999999987665 23566677777777776652 21 222222211
Q ss_pred -cCc-CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhc-CCCeEeeCC--CCHHHH
Q 017448 238 -ANY-MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAF-DGTFIASGG--YNRDDG 310 (371)
Q Consensus 238 -~~~-~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~-~~pVi~~Gg--it~~~a 310 (371)
++. .+.....+.+++.++. +.|+|||-++-|+.+..+.. +.-..+.++.|++.+ ++|++.-|+ ++.++.
T Consensus 143 ~ed~~~g~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~ 218 (293)
T PRK07315 143 EEDGIIGKGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQI 218 (293)
T ss_pred cCccccCccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCCHHHH
Confidence 111 1111112455444443 57999999986665433311 234566789999999 599888888 899999
Q ss_pred HHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 311 NKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 311 ~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
.++++.| ++-|.+.+.+.. ++.+.++
T Consensus 219 ~~~i~~G-i~KiNv~T~i~~--~~~~~~~ 244 (293)
T PRK07315 219 QEAIKLG-VAKVNVNTECQI--AFANATR 244 (293)
T ss_pred HHHHHcC-CCEEEEccHHHH--HHHHHHH
Confidence 9999999 999999999987 4444443
No 96
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=98.28 E-value=1.3e-05 Score=78.64 Aligned_cols=114 Identities=12% Similarity=0.199 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+++++.++.+.+.||..++|.. .+.|+++|+++|++ .|.+..|.
T Consensus 128 ~~~~~~a~~~~~~Gf~~~KiKv--------------------------------~~~v~avre~~G~~~~l~vDaN~--- 172 (361)
T cd03322 128 PELLEAVERHLAQGYRAIRVQL--------------------------------PKLFEAVREKFGFEFHLLHDVHH--- 172 (361)
T ss_pred HHHHHHHHHHHHcCCCeEeeCH--------------------------------HHHHHHHHhccCCCceEEEECCC---
Confidence 3455666777778999999853 67799999999976 45554443
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
..+.++++.+++.|++.++.|++ +| -+.......+.+++..++||.+...+ ++.++.++++.+.
T Consensus 173 ------~w~~~~A~~~~~~l~~~~l~~iE--eP-------~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a 237 (361)
T cd03322 173 ------RLTPNQAARFGKDVEPYRLFWME--DP-------TPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERL 237 (361)
T ss_pred ------CCCHHHHHHHHHHhhhcCCCEEE--CC-------CCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCC
Confidence 23577899999999999999998 54 22334566778999999998887777 8999999999999
Q ss_pred ccEEEe
Q 017448 319 TDLVAY 324 (371)
Q Consensus 319 ~D~V~~ 324 (371)
+|+|.+
T Consensus 238 ~di~~~ 243 (361)
T cd03322 238 IDYIRT 243 (361)
T ss_pred CCEEec
Confidence 998864
No 97
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.27 E-value=1.6e-05 Score=77.64 Aligned_cols=128 Identities=20% Similarity=0.310 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
..+.++.+.+.||..++|+.|.+. + ..| + ..-.+.-++.|+++|+++|++ .|.|.-|.
T Consensus 127 ~~~~~~~~~~~Gf~~~KiKvg~~~-------~----~~~--~---~~~~~~D~~~i~avr~~~g~~~~l~vDaN~----- 185 (352)
T cd03325 127 VAEAARARREAGFTAVKMNATEEL-------Q----WID--T---SKKVDAAVERVAALREAVGPDIDIGVDFHG----- 185 (352)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCc-------c----cCC--C---HHHHHHHHHHHHHHHHhhCCCCEEEEECCC-----
Confidence 345556666799999999886310 0 011 0 111344589999999999975 45554443
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
..+.++++.+++.|++.+++||+ +|- ...+....+.+++..++||.+...+ +++++..+++.+.+|
T Consensus 186 ----~~~~~~A~~~~~~l~~~~i~~iE--eP~-------~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d 252 (352)
T cd03325 186 ----RVSKPMAKDLAKELEPYRLLFIE--EPV-------LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVD 252 (352)
T ss_pred ----CCCHHHHHHHHHhccccCCcEEE--CCC-------CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCC
Confidence 34577899999999999999998 542 2234566788999999998887776 899999999998899
Q ss_pred EEEe
Q 017448 321 LVAY 324 (371)
Q Consensus 321 ~V~~ 324 (371)
.|.+
T Consensus 253 ~v~~ 256 (352)
T cd03325 253 IIQP 256 (352)
T ss_pred EEec
Confidence 8864
No 98
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.26 E-value=1.9e-05 Score=75.67 Aligned_cols=78 Identities=18% Similarity=0.062 Sum_probs=62.0
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
+.++.++++|+|+|.++........ .......++.++++.+++|||+.||| +.+++.++++.| +|+|++|+.|+.-+
T Consensus 120 ~~a~~a~~~GaD~Ivv~g~eagGh~-g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A~gV~iGt~f~~t~ 197 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHI-GELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-AEAVQMGTRFLCAK 197 (307)
T ss_pred HHHHHHHHcCCCEEEEECcccCCCC-CCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEeecchHHhccc
Confidence 4678889999999998765322211 12234567788999999999999999 899999999987 99999999999866
Q ss_pred c
Q 017448 333 D 333 (371)
Q Consensus 333 ~ 333 (371)
+
T Consensus 198 E 198 (307)
T TIGR03151 198 E 198 (307)
T ss_pred c
Confidence 4
No 99
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.26 E-value=1.6e-05 Score=78.69 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-C------CCCCC
Q 017448 212 RFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-D------KLDAP 284 (371)
Q Consensus 212 r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~------~~~~~ 284 (371)
.-+.++|+.+|+..+..||++|+... . ..+ ++++.++..|+|+|+|+...-.... . ...+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~--------~-~~~---~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt 266 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAG--------H-GEG---DIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPT 266 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCC--------C-CHH---HHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccH
Confidence 44789999999998745899999873 1 222 4677777778999999764211100 0 01111
Q ss_pred chhhHhHHHhc-------CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 285 PYSLLPMRKAF-------DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 285 ~~~~~~ik~~~-------~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
...+..+++.+ ++||++.||+ +..++.++|.-| +|+|.+||+++.
T Consensus 267 ~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~ 319 (392)
T cd02808 267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence 12334454443 5899999999 999999999999 999999999995
No 100
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.26 E-value=1.4e-05 Score=69.92 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++-..++|.|.|-|.+-. ..|+.-+.++++.||+.. -.+.-.++
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~-----------------------R~Rp~~l~~li~~i~~~~--~l~MADis-------- 100 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATD-----------------------RPRPETLEELIREIKEKY--QLVMADIS-------- 100 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SS-----------------------SS-SS-HHHHHHHHHHCT--SEEEEE-S--------
T ss_pred HHHHHHHHHcCCCEEEEecCC-----------------------CCCCcCHHHHHHHHHHhC--cEEeeecC--------
Confidence 355556678999999987743 123345789999999976 34444443
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLV 322 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V 322 (371)
+.|+ +....++|+|+|.-+...|........++..+++.+.+. ++|||+-|++ ||+++.++++.| ++.|
T Consensus 101 ----t~ee----~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G-A~aV 170 (192)
T PF04131_consen 101 ----TLEE----AINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALELG-AHAV 170 (192)
T ss_dssp ----SHHH----HHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHHTT--SEE
T ss_pred ----CHHH----HHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC-CeEE
Confidence 3443 345677899999877665654431233445577777775 8999999999 999999999999 9999
Q ss_pred EechHhhhCCcHHHH
Q 017448 323 AYGRSFLANPDLPKR 337 (371)
Q Consensus 323 ~~gR~~ladP~l~~k 337 (371)
.+|-+ |-.|+++.+
T Consensus 171 VVGsA-ITrP~~It~ 184 (192)
T PF04131_consen 171 VVGSA-ITRPQEITK 184 (192)
T ss_dssp EE-HH-HH-HHHHHH
T ss_pred EECcc-cCCHHHHHH
Confidence 99955 667766543
No 101
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.24 E-value=6.4e-05 Score=69.81 Aligned_cols=141 Identities=12% Similarity=-0.000 Sum_probs=92.9
Q ss_pred CCCCCChHHHHHHHH------------HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHH
Q 017448 147 PPRPLRTEEIPQIVN------------DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFA 214 (371)
Q Consensus 147 ~~~~mt~~eI~~ii~------------~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~ 214 (371)
..+.=+.++|++|.+ .|..-|....++|.|-|+ +. . |.|-+
T Consensus 48 v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID---aT------------~------------r~rP~ 100 (283)
T cd04727 48 VARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID---ES------------E------------VLTPA 100 (283)
T ss_pred eeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe---cc------------C------------CCCcH
Confidence 455556677776653 357778888899999995 22 1 11224
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC-----------------
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA----------------- 277 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~----------------- 277 (371)
-+++..+|+.. ..++.--. .+.+++ ....+.|+|+|..+.-.++..
T Consensus 101 ~~~~~~iK~~~-~~l~MAD~------------stleEa----l~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~ 163 (283)
T cd04727 101 DEEHHIDKHKF-KVPFVCGA------------RNLGEA----LRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRK 163 (283)
T ss_pred HHHHHHHHHHc-CCcEEccC------------CCHHHH----HHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 77888888876 22332211 134433 334567888886554222211
Q ss_pred ------------CCCCCCCchhhHhHHHhcCCCeE--eeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 278 ------------QDKLDAPPYSLLPMRKAFDGTFI--ASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 278 ------------~~~~~~~~~~~~~ik~~~~~pVi--~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
.......+.+++.+++.+++||+ +.||| |++++.++++.| ||.|+++++++..+
T Consensus 164 ~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~ 232 (283)
T cd04727 164 LQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSE 232 (283)
T ss_pred HhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCC
Confidence 00122345678889999999986 99999 999999999998 99999999999633
No 102
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.24 E-value=2.6e-05 Score=72.25 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHH-----HHHHHHHHHhCCccc--EEE
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFAL-----EIVEAVVNEIGAERV--GIR 233 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~-----eiv~avR~~vg~~~i--~vr 233 (371)
+.+.+.++...++ +|.+||+..| +|-..| |..+++....++ ++++++|+.+.. |+ .++
T Consensus 18 ~~~~~~~~~l~~~-ad~iElgip~-----------sdp~ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~-Pl~lM~y 82 (244)
T PRK13125 18 ESFKEFIIGLVEL-VDILELGIPP-----------KYPKYD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSV-PIILMTY 82 (244)
T ss_pred HHHHHHHHHHHhh-CCEEEECCCC-----------CCCCCC--CHHHHHHHHHHHHcCcHHHHHHHhccCCC-CEEEEEe
Confidence 5677777777777 9999999866 666666 667777776666 899999987642 43 466
Q ss_pred EcCccCc--------CcCC------CC---ChHHHHHHHHHHHhhcCccEEEEcCCCcc--c------CCC---------
Q 017448 234 LSPHANY--------MEAQ------DS---NPEALGLYMAKALNKYQILYLHILEPRLF--N------AQD--------- 279 (371)
Q Consensus 234 l~~~~~~--------~~~~------~~---~~~e~~~~la~~l~~~Gvd~l~v~~~~~~--~------~~~--------- 279 (371)
+|+.... ...+ .. +..++..++.+.+.+.|++.+-...+... . ..+
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~ 162 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRP 162 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCC
Confidence 7753100 0000 00 11234455566666666665433332110 0 000
Q ss_pred -CCCCC----chhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 280 -KLDAP----PYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 280 -~~~~~----~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
....+ ...++.+|+.. +.|+++.||+ +++++.++++.| +|.|.+|.+++.
T Consensus 163 ~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~ 219 (244)
T PRK13125 163 ATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE 219 (244)
T ss_pred CCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 00011 12455677777 4789999999 999999999998 999999999875
No 103
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.22 E-value=7.9e-05 Score=72.22 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=70.1
Q ss_pred HHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHh
Q 017448 218 VEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKA 294 (371)
Q Consensus 218 v~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~ 294 (371)
+...|+..|++ .||+-.+ +.++ +....+.|+||+-++ +-+....++ .+.....++.+++.
T Consensus 230 ~~~aR~llg~~~iIG~S~H------------s~~e----~~~A~~~GaDYI~lG-Pvf~T~tKp~~~~~Gle~l~~~~~~ 292 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTT------------NPEE----MAKAIAEGADYIGVG-PVFPTPTKPGKAPAGLEYLKYAAKE 292 (347)
T ss_pred HHHHHHhcCCCCEEEEecC------------CHHH----HHHHHHcCCCEEEEC-CCcCCCCCCCCCCCCHHHHHHHHHh
Confidence 34457777776 5665322 1222 233446799999885 333322211 22334667788888
Q ss_pred cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHH
Q 017448 295 FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 295 ~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
+++||++.|||+++++.++++.| +|+|++++++...++....
T Consensus 293 ~~iPv~AiGGI~~~ni~~l~~~G-a~gVAvisaI~~a~dp~~~ 334 (347)
T PRK02615 293 APIPWFAIGGIDKSNIPEVLQAG-AKRVAVVRAIMGAEDPKQA 334 (347)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC-CcEEEEeHHHhCCCCHHHH
Confidence 89999999999999999999998 9999999999987664443
No 104
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.19 E-value=9.2e-05 Score=66.48 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
.+.++...++...+..|++++++...+-. ....+...++.+|+.+++|++.+||+ ++++++++++.| +|.|.+|
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa----~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG 205 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGA----SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCC----CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence 46778888888888999999998553211 12234678899999999999999999 899999999998 9999876
No 105
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.18 E-value=3.8e-05 Score=69.15 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=37.4
Q ss_pred CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 297 GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 297 ~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
+|+++.||++++++.++++.| +|.|.+|++++..+|....++
T Consensus 166 ~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 688899999999999999888 999999999999898766654
No 106
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.17 E-value=3.5e-05 Score=75.86 Aligned_cols=134 Identities=19% Similarity=0.063 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
..+-+..+.++|.|.|-|.++||. .+.+.++|+.+|+.+++-+|.+.--.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~g~------------------------~~~~~~~v~~ik~~~p~~~vi~g~V~------ 203 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAHGH------------------------STRIIELVKKIKTKYPNLDLIAGNIV------ 203 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC------------------------ChhHHHHHHHHHhhCCCCcEEEEecC------
Confidence 345666777899999999998842 13468899999999864343332111
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCC--CCCCCchhhHhHH---HhcCCCeEeeCCC-CHHHHHHH
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQD--KLDAPPYSLLPMR---KAFDGTFIASGGY-NRDDGNKA 313 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~--~~~~~~~~~~~ik---~~~~~pVi~~Ggi-t~~~a~~~ 313 (371)
+. +-++.+.++|+|+|-+.-+. +..... -..+....+..++ +.+++|||+-||| ++.++.++
T Consensus 204 -----T~----e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KA 274 (404)
T PRK06843 204 -----TK----EAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKA 274 (404)
T ss_pred -----CH----HHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH
Confidence 23 35667778999999874321 111100 1112333333334 4457999999999 99999999
Q ss_pred HHcCCccEEEechHhhhCCcHHH
Q 017448 314 VAENYTDLVAYGRSFLANPDLPK 336 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ladP~l~~ 336 (371)
|+-| +|+|++|+.+..-.+-+-
T Consensus 275 LalG-A~aVmvGs~~agt~Espg 296 (404)
T PRK06843 275 IAAG-ADSVMIGNLFAGTKESPS 296 (404)
T ss_pred HHcC-CCEEEEcceeeeeecCCC
Confidence 9999 999999999988655443
No 107
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=98.16 E-value=3.2e-05 Score=74.64 Aligned_cols=121 Identities=7% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
+.++.++...+.||..++|..|.. + ..--.+.|++||+++|++ .|.+..|.
T Consensus 121 ~~~~~a~~~~~~G~~~~KvKvG~~--------------------~----~~~d~~~v~air~~~g~~~~l~vDaN~---- 172 (320)
T PRK02714 121 AALQQWQTLWQQGYRTFKWKIGVD--------------------P----LEQELKIFEQLLERLPAGAKLRLDANG---- 172 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCC--------------------C----hHHHHHHHHHHHHhcCCCCEEEEECCC----
Confidence 355667777788999999987541 1 122378899999999875 34444332
Q ss_pred CcCCCCChHHHHHHHHHHHhh---cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHc
Q 017448 241 MEAQDSNPEALGLYMAKALNK---YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAE 316 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~ 316 (371)
..+.+++..+++.|++ .++.||+ .|- +..+...++.+++.+++||.+...+ ++.++..+++.
T Consensus 173 -----~w~~~~A~~~~~~l~~l~~~~i~~iE--qP~-------~~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~ 238 (320)
T PRK02714 173 -----GLSLEEAKRWLQLCDRRLSGKIEFIE--QPL-------PPDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQ 238 (320)
T ss_pred -----CCCHHHHHHHHHHHhhccCCCccEEE--CCC-------CcccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHc
Confidence 3457789999999988 6788887 441 2234566788999999999998887 89999999999
Q ss_pred CCccEEEe
Q 017448 317 NYTDLVAY 324 (371)
Q Consensus 317 g~~D~V~~ 324 (371)
+.+|+|.+
T Consensus 239 ~a~d~v~i 246 (320)
T PRK02714 239 GWRGIFVI 246 (320)
T ss_pred CCCCEEEE
Confidence 99998764
No 108
>PRK06801 hypothetical protein; Provisional
Probab=98.15 E-value=0.00042 Score=65.52 Aligned_cols=194 Identities=12% Similarity=0.068 Sum_probs=118.6
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccc-cCC-CCC---CC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVS-TYG-FQP---NG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~-~~~-~~~---~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+......- ... +.. .. ...--|-.+.++ .. .+
T Consensus 28 ~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlD---------H~--~~---------- 86 (286)
T PRK06801 28 SHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLD---------HG--LH---------- 86 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECC---------CC--CC----------
Confidence 56788899999999999999997643210 000 000 00 000011111111 11 11
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE---EcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR---LSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr---l~~~~~ 239 (371)
.+.+++|.++||+.|.+-+.+ -+++...+...++++..++. |-+ |..- +...++
T Consensus 87 -~e~i~~Ai~~GftSVm~D~S~--------------------l~~eeNi~~t~~v~~~a~~~-gv~-VE~ElG~vgg~e~ 143 (286)
T PRK06801 87 -FEAVVRALRLGFSSVMFDGST--------------------LEYEENVRQTREVVKMCHAV-GVS-VEAELGAVGGDEG 143 (286)
T ss_pred -HHHHHHHHHhCCcEEEEcCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCe-EEeecCcccCCCC
Confidence 345667888999999986543 14567788888888888664 321 2112 222111
Q ss_pred c---C--cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 240 Y---M--EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 240 ~---~--~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
. . +.......+++.++++ +.|+|+|-++-++....++. +....+.++.+++.+++|++.-|+ ++.++..
T Consensus 144 ~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~ 220 (286)
T PRK06801 144 GALYGEADSAKFTDPQLARDFVD---RTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFR 220 (286)
T ss_pred CcccCCcccccCCCHHHHHHHHH---HHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 1 0 0000123354555543 56999999977765554422 234556788999999999887777 8999999
Q ss_pred HHHHcCCccEEEechHhhh
Q 017448 312 KAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~la 330 (371)
++++.| ++-|-+++.+..
T Consensus 221 ~~i~~G-i~KINv~T~~~~ 238 (286)
T PRK06801 221 RAIELG-IHKINFYTGMSQ 238 (286)
T ss_pred HHHHcC-CcEEEehhHHHH
Confidence 999999 999999988765
No 109
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=98.13 E-value=3.2e-05 Score=76.03 Aligned_cols=113 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEA 250 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e 250 (371)
++.||..++|+.|.. + .+--.+.|+++|+++|++ +.+++..+. ..+.+
T Consensus 154 ~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~~~re~~g~~-~~l~~DaN~-------~~~~~ 201 (368)
T TIGR02534 154 EEKRHRSFKLKIGAR--------------------D----PADDVAHVVAIAKALGDR-ASVRVDVNA-------AWDER 201 (368)
T ss_pred HhcCcceEEEEeCCC--------------------C----cHHHHHHHHHHHHhcCCC-cEEEEECCC-------CCCHH
Confidence 357999999986530 1 223478999999999975 233444321 34577
Q ss_pred HHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 251 LGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
+++.+++.|++.++.|++ +|. ........+.+++..++||.+...+ ++.++.++++.+.+|+|.+
T Consensus 202 ~A~~~~~~l~~~~~~~iE--eP~-------~~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 202 TALHYLPQLADAGVELIE--QPT-------PAENREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred HHHHHHHHHHhcChhheE--CCC-------CcccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 899999999999999887 542 2233456677999999999888777 8999999999998998876
No 110
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=98.13 E-value=4.4e-05 Score=75.65 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=84.7
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPE 249 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~ 249 (371)
++.||.+++|..++| |.. | ..-.+.-.+.|++||+++|++ .|.|..|. ..+.
T Consensus 169 ~~~Gf~~~Kik~~~g--------~~~-------g---~~~~~~di~~v~avReavG~d~~l~vDaN~---------~~~~ 221 (394)
T PRK15440 169 KEMGFIGGKMPLHHG--------PAD-------G---DAGLRKNAAMVADMREKVGDDFWLMLDCWM---------SLDV 221 (394)
T ss_pred HhCCCCEEEEcCCcC--------ccc-------c---hHHHHHHHHHHHHHHHhhCCCCeEEEECCC---------CCCH
Confidence 468999999986543 100 1 011344589999999999987 46665553 3457
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC--eEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT--FIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p--Vi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
++++++++.|++.++.|++ +| -++.+....+.+++.++.| +.+.... ++.++.++++.+.+|+|.+
T Consensus 222 ~~Ai~~~~~le~~~l~wiE--EP-------l~~~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 222 NYATKLAHACAPYGLKWIE--EC-------LPPDDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred HHHHHHHHHhhhcCCccee--CC-------CCcccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 7899999999999999998 54 2233456677899998755 3333345 8999999999999998863
No 111
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.11 E-value=5.1e-05 Score=76.55 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+-++.+.++|+|.|+|..+||. .....+.|+.+|+..++-+|.+.-
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~------------------------~~~~~~~i~~i~~~~~~~~vi~G~--------- 272 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGH------------------------SIYVIDSIKEIKKTYPDLDIIAGN--------- 272 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc------------------------HhHHHHHHHHHHHhCCCCCEEEEe---------
Confidence 45566778899999999999841 134788999999987543555411
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCC--c-cc-CCC-CCCCCchhhHhHHH---hcCCCeEeeCCC-CHHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPR--L-FN-AQD-KLDAPPYSLLPMRK---AFDGTFIASGGY-NRDDGNKAV 314 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~--~-~~-~~~-~~~~~~~~~~~ik~---~~~~pVi~~Ggi-t~~~a~~~l 314 (371)
-.+.+ -++.+.++|+|+|.+..+. . .. ... ...+....+..+.+ ..++|||+.||+ ++.++.++|
T Consensus 273 --v~t~~----~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl 346 (450)
T TIGR01302 273 --VATAE----QAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL 346 (450)
T ss_pred --CCCHH----HHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH
Confidence 11333 4566777999999875321 1 11 100 11222333344433 357899999999 999999999
Q ss_pred HcCCccEEEechHhhhCCcHHHHH--HhCCCC
Q 017448 315 AENYTDLVAYGRSFLANPDLPKRF--ELNAAL 344 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~l~~k~--~~g~~~ 344 (371)
+.| +|.|++|+.|..-.+-|-.+ .+|+.+
T Consensus 347 a~G-A~~V~~G~~~a~~~e~pg~~~~~~g~~~ 377 (450)
T TIGR01302 347 AAG-ADAVMLGSLLAGTTESPGEYEIINGRRY 377 (450)
T ss_pred HcC-CCEEEECchhhcCCcCCCceEEECCEEE
Confidence 999 99999999988877766553 345443
No 112
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=98.10 E-value=0.00049 Score=65.05 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC-
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA- 243 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~- 243 (371)
+..++|.++||+.|.|-+.+ -+++...+...++++-+++ .|- .|...+.......+.
T Consensus 88 e~i~~ai~~Gf~sVmid~s~--------------------l~~~eni~~t~~v~~~a~~-~gv-~Ve~ElG~~gg~ed~~ 145 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSH--------------------LPFEENLALTKKVVEIAHA-KGV-SVEAELGTLGGIEDGV 145 (282)
T ss_pred HHHHHHHHcCCCEEEECCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEeeCCCcCccccc
Confidence 45556667788887776554 1355556777777776654 232 344444331100010
Q ss_pred -C---CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhcCCCeEeeC--CCCHHHHHHHHHc
Q 017448 244 -Q---DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASG--GYNRDDGNKAVAE 316 (371)
Q Consensus 244 -~---~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~G--git~~~a~~~l~~ 316 (371)
+ .-.+.+++.++. ++.|+|||.++-|+....+. .+....+.++.|++.+++|++.-| |++.++..++++.
T Consensus 146 ~g~~~~~t~~eea~~f~---~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~ 222 (282)
T TIGR01859 146 DEKEAELADPDEAEQFV---KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKL 222 (282)
T ss_pred cccccccCCHHHHHHHH---HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHc
Confidence 0 012445444443 33699999987665432221 233445678899999999999888 8999999999999
Q ss_pred CCccEEEechHhhh
Q 017448 317 NYTDLVAYGRSFLA 330 (371)
Q Consensus 317 g~~D~V~~gR~~la 330 (371)
| ++-|.++..+..
T Consensus 223 G-i~kiNv~T~l~~ 235 (282)
T TIGR01859 223 G-IAKINIDTDCRI 235 (282)
T ss_pred C-CCEEEECcHHHH
Confidence 8 999999988753
No 113
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.10 E-value=4.2e-05 Score=75.13 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=86.1
Q ss_pred HHHHHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 165 LAGRNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 165 ~aA~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
+.+..+.+.| |..++|+.|.. + .+--.+.|++||+.+|++ .|.+..|.
T Consensus 148 ~~~~~~~~~G~f~~~KiKvg~~--------------------~----~~~d~~~v~avr~~~g~~~~l~iDaN~------ 197 (365)
T cd03318 148 AEAEEMLEAGRHRRFKLKMGAR--------------------P----PADDLAHVEAIAKALGDRASVRVDVNQ------ 197 (365)
T ss_pred HHHHHHHhCCCceEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCCcEEEEECCC------
Confidence 3444456778 99999986520 1 222368899999999975 34443332
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
..+.++++.+++.|++.++.||+ +|- +.......+.+++..++||.+...+ ++.++.++++.+.+|+
T Consensus 198 ---~~~~~~A~~~~~~l~~~~~~~iE--eP~-------~~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~ 265 (365)
T cd03318 198 ---AWDESTAIRALPRLEAAGVELIE--QPV-------PRENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADV 265 (365)
T ss_pred ---CCCHHHHHHHHHHHHhcCcceee--CCC-------CcccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCe
Confidence 33567899999999999999887 542 2234556778899899998887776 8999999999988998
Q ss_pred EEe
Q 017448 322 VAY 324 (371)
Q Consensus 322 V~~ 324 (371)
+.+
T Consensus 266 ~~~ 268 (365)
T cd03318 266 FSL 268 (365)
T ss_pred EEE
Confidence 875
No 114
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.09 E-value=1.8e-05 Score=72.70 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.++++.-..... ....+...++.+++.+++||+.+||+ +.++++++++.| +|.|.+|+.++.
T Consensus 32 p~~~a~~~~~~g~~~i~i~dl~~~~~--~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~~l~ 108 (232)
T TIGR03572 32 PVNAARIYNAKGADELIVLDIDASKR--GREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccc--CCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhc
Confidence 45689999999999998876543211 22456677888999999999999999 899999998887 999999999999
Q ss_pred CCcHHHHHHhC
Q 017448 331 NPDLPKRFELN 341 (371)
Q Consensus 331 dP~l~~k~~~g 341 (371)
||++++++.+.
T Consensus 109 ~~~~~~~~~~~ 119 (232)
T TIGR03572 109 NPDLIEEAARR 119 (232)
T ss_pred CHHHHHHHHHH
Confidence 99999998874
No 115
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=98.09 E-value=3.9e-05 Score=76.11 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=85.6
Q ss_pred HHHHHHHHH-HcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 163 FRLAGRNAI-KAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~-~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
+++.|+.+. +.||..++|+.|.. + .+.-.+.|+++|++++ + +.+++..+.
T Consensus 172 ~~~~a~~~~~~~Gf~~~KiKvG~~-----------~-------------~~~di~~v~avRea~~-~-~~l~vDaN~--- 222 (395)
T cd03323 172 VVRLARAAIDRYGFKSFKLKGGVL-----------P-------------GEEEIEAVKALAEAFP-G-ARLRLDPNG--- 222 (395)
T ss_pred HHHHHHHHHHhcCCcEEEEecCCC-----------C-------------HHHHHHHHHHHHHhCC-C-CcEEEeCCC---
Confidence 445555555 46999999987541 0 2334789999999995 4 344444321
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
..+.++++.+++.|++ ++.|++ +| -......+.+++.+++||.+...+ +.+++.++++.+.+|
T Consensus 223 ----~w~~~~A~~~~~~l~~-~l~~iE--eP---------~~d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avd 286 (395)
T cd03323 223 ----AWSLETAIRLAKELEG-VLAYLE--DP---------CGGREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVD 286 (395)
T ss_pred ----CcCHHHHHHHHHhcCc-CCCEEE--CC---------CCCHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCc
Confidence 3357789999999999 999887 43 125566778999999999887777 889999999999999
Q ss_pred EEEe
Q 017448 321 LVAY 324 (371)
Q Consensus 321 ~V~~ 324 (371)
++.+
T Consensus 287 il~~ 290 (395)
T cd03323 287 IPLA 290 (395)
T ss_pred EEee
Confidence 8753
No 116
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.08 E-value=5.1e-05 Score=77.24 Aligned_cols=140 Identities=17% Similarity=0.150 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++.+.++|.|.|+|..+||. ..+..+.|+.||+..++-+|.+.
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~------------------------s~~~~~~i~~ik~~~~~~~v~aG---------- 288 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGN------------------------SIYQIDMIKKLKSNYPHVDIIAG---------- 288 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCC------------------------chHHHHHHHHHHhhCCCceEEEC----------
Confidence 56677788899999999998751 24457899999998753344431
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcC--CC-cccC-C-CCCCCCchhhHhH---HHhcCCCeEeeCCC-CHHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILE--PR-LFNA-Q-DKLDAPPYSLLPM---RKAFDGTFIASGGY-NRDDGNKAV 314 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~--~~-~~~~-~-~~~~~~~~~~~~i---k~~~~~pVi~~Ggi-t~~~a~~~l 314 (371)
.-.+.+ -++.+.++|+|+|.+.. +. .... . ....+....+..+ .+..++|||+.||+ ++.++.+++
T Consensus 289 -~V~t~~----~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAl 363 (495)
T PTZ00314 289 -NVVTAD----QAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKAL 363 (495)
T ss_pred -CcCCHH----HHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 112333 45567789999998742 21 1111 0 0111222333333 34457999999999 999999999
Q ss_pred HcCCccEEEechHhhhCCcHHHH--HHhCCC
Q 017448 315 AENYTDLVAYGRSFLANPDLPKR--FELNAA 343 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~l~~k--~~~g~~ 343 (371)
+.| +|+|++|+.|..--+.+.+ .++|+.
T Consensus 364 a~G-A~~Vm~G~~~a~~~e~~~~~~~~~g~~ 393 (495)
T PTZ00314 364 ALG-ADCVMLGSLLAGTEEAPGEYFFKDGVR 393 (495)
T ss_pred HcC-CCEEEECchhccccccCCceeeeCCeE
Confidence 999 9999999998775554443 345544
No 117
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=98.07 E-value=0.0002 Score=63.20 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=60.7
Q ss_pred HHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhc
Q 017448 219 EAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAF 295 (371)
Q Consensus 219 ~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~ 295 (371)
..+|+..+++ .|++-.+. .++ ++.+.+.|+||+-++. -+....++ .+..+..++++++..
T Consensus 86 ~~~r~~~~~~~~ig~S~h~------------~~e----~~~a~~~g~dYv~~gp-vf~T~sk~~~~~~g~~~l~~~~~~~ 148 (180)
T PF02581_consen 86 AEARKLLGPDKIIGASCHS------------LEE----AREAEELGADYVFLGP-VFPTSSKPGAPPLGLDGLREIARAS 148 (180)
T ss_dssp HHHHHHHTTTSEEEEEESS------------HHH----HHHHHHCTTSEEEEET-SS--SSSSS-TTCHHHHHHHHHHHT
T ss_pred HHhhhhcccceEEEeecCc------------HHH----HHHhhhcCCCEEEECC-ccCCCCCccccccCHHHHHHHHHhC
Confidence 4456667766 67764332 222 4566688999999854 33322212 222345667888889
Q ss_pred CCCeEeeCCCCHHHHHHHHHcCCccEEEechH
Q 017448 296 DGTFIASGGYNRDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 296 ~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~ 327 (371)
++||++-||+++++..++.+.| +|+|++.|+
T Consensus 149 ~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~a 179 (180)
T PF02581_consen 149 PIPVYALGGITPENIPELREAG-ADGVAVISA 179 (180)
T ss_dssp SSCEEEESS--TTTHHHHHHTT--SEEEESHH
T ss_pred CCCEEEEcCCCHHHHHHHHHcC-CCEEEEEee
Confidence 9999999999999999999998 999999886
No 118
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.06 E-value=0.00011 Score=68.44 Aligned_cols=78 Identities=18% Similarity=0.035 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.+-++.-..... ....++..++.+++.+++||+++|++ +.+++.++++...||.|++|+++..
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~--~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGT--KNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCC--CCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 45788889999999887754221111 12246778889999999999999999 8999999998644999999999886
Q ss_pred C
Q 017448 331 N 331 (371)
Q Consensus 331 d 331 (371)
.
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 5
No 119
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=98.06 E-value=4.8e-05 Score=76.37 Aligned_cols=118 Identities=14% Similarity=0.105 Sum_probs=84.7
Q ss_pred HHHHHHHHHH-cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 163 FRLAGRNAIK-AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 163 f~~aA~~a~~-aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
+++.|+...+ .||..++|+.|.. + ...-.+.|++||+++ ++ .|.|..|.
T Consensus 184 ~~~~a~~~~~~~Gf~a~KiKvG~~-----------~-------------~~~Di~~v~avRea~-~d~~L~vDAN~---- 234 (441)
T TIGR03247 184 VVRLAEAAYDRYGFRDFKLKGGVL-----------R-------------GEEEIEAVTALAKRF-PQARITLDPNG---- 234 (441)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCC-----------C-------------hHHHHHHHHHHHHhC-CCCeEEEECCC----
Confidence 4445555444 5999999987641 0 123478899999998 44 35444443
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCC----chhhHhHHHhcCCCeEeeCCC-CHHHHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAP----PYSLLPMRKAFDGTFIASGGY-NRDDGNKAVA 315 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~----~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~ 315 (371)
..+.++++.+++.|++. +.|++ +|. +..+ ...++.+++.+++||.+...+ ++.++.++++
T Consensus 235 -----~wt~~~Ai~~~~~Le~~-~~~iE--ePv-------~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~ 299 (441)
T TIGR03247 235 -----AWSLDEAIALCKDLKGV-LAYAE--DPC-------GAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQ 299 (441)
T ss_pred -----CCCHHHHHHHHHHhhhh-hceEe--CCC-------CcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHH
Confidence 34577899999999998 88877 542 1222 445778999999999887776 8999999999
Q ss_pred cCCccEEEe
Q 017448 316 ENYTDLVAY 324 (371)
Q Consensus 316 ~g~~D~V~~ 324 (371)
.+.+|++.+
T Consensus 300 ~~avdi~~~ 308 (441)
T TIGR03247 300 LQAVDIPLA 308 (441)
T ss_pred hCCCCEEec
Confidence 999998653
No 120
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=98.05 E-value=0.00034 Score=63.34 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=58.7
Q ss_pred HHHhhcCccEEEEcCCCcccCCCC---CCCCchhhHhHHHh-cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 257 KALNKYQILYLHILEPRLFNAQDK---LDAPPYSLLPMRKA-FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~~~~~~~~---~~~~~~~~~~ik~~-~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
.+.++.|+||+-++. -+....++ ...-+..++.+.+. .++||++-|||+.+++.++++.| +++|++.+++...+
T Consensus 116 ~~A~~~gaDYi~lgp-vf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~GiAvisai~~~~ 193 (211)
T PRK03512 116 DVALAARPSYIALGH-VFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGISLERAPAVLATG-VGSIAVVSAITQAA 193 (211)
T ss_pred HHHhhcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhhHhhCCC
Confidence 445678999999853 33322211 11223345555555 57999999999999999999998 99999999999988
Q ss_pred cHHHHHH
Q 017448 333 DLPKRFE 339 (371)
Q Consensus 333 ~l~~k~~ 339 (371)
|+...++
T Consensus 194 d~~~~~~ 200 (211)
T PRK03512 194 DWRAATA 200 (211)
T ss_pred CHHHHHH
Confidence 8766554
No 121
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.03 E-value=2.5e-05 Score=71.71 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++.|++.+++..-..... ....+...++.+++.+++||++.||+ +.++++++++.| ||.|.+|+.++.
T Consensus 32 ~~~~a~~~~~~g~~~i~v~dld~~~~--g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l~ 108 (233)
T PRK00748 32 PVAQAKAWEDQGAKWLHLVDLDGAKA--GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCcccc--CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHHh
Confidence 45689999999999999976421111 22356677888889999999999999 899999999998 999999999999
Q ss_pred CCcHHHHHHhC
Q 017448 331 NPDLPKRFELN 341 (371)
Q Consensus 331 dP~l~~k~~~g 341 (371)
+|++..++.+.
T Consensus 109 ~~~~l~ei~~~ 119 (233)
T PRK00748 109 NPELVKEACKK 119 (233)
T ss_pred CHHHHHHHHHH
Confidence 99998887664
No 122
>PLN02535 glycolate oxidase
Probab=98.02 E-value=8.9e-05 Score=72.26 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 213 FALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 213 ~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
+.-+-|+.+|+.++ -||.||=-. +.+ -++.+.+.|+|+|.++...-.... ....-...+.+++
T Consensus 210 ~tW~~i~~lr~~~~-~PvivKgV~-----------~~~----dA~~a~~~GvD~I~vsn~GGr~~d-~~~~t~~~L~ev~ 272 (364)
T PLN02535 210 LSWKDIEWLRSITN-LPILIKGVL-----------TRE----DAIKAVEVGVAGIIVSNHGARQLD-YSPATISVLEEVV 272 (364)
T ss_pred CCHHHHHHHHhccC-CCEEEecCC-----------CHH----HHHHHHhcCCCEEEEeCCCcCCCC-CChHHHHHHHHHH
Confidence 34577888888763 378887322 122 356788899999998753211111 1111134556677
Q ss_pred Hhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 293 KAF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 293 ~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
+.+ ++|||+.||| +..++.++|.-| +|+|++||+++..+.
T Consensus 273 ~av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~ 315 (364)
T PLN02535 273 QAVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence 765 5899999999 899999999999 999999999998764
No 123
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.01 E-value=0.0002 Score=65.29 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHc-CCCEEe--cccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 162 DFRLAGRNAIKA-GFDGVE--IHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~a-G~DgVe--i~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
+=++.|+.|.|+ |-|-|+ |+....||+. | +.+.|++.++.+.+....+=+..
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi~d~~~Llp-----------d------------~~~tv~aa~~L~~~Gf~vlpyc~-- 131 (248)
T cd04728 77 EAVRTARLAREALGTDWIKLEVIGDDKTLLP-----------D------------PIETLKAAEILVKEGFTVLPYCT-- 131 (248)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCcccccc-----------C------------HHHHHHHHHHHHHCCCEEEEEeC--
Confidence 447888888886 567774 4443333222 1 57888999888865433321222
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
++ ..+|++|++.|.+++-......+.. .+..+.++++.|++..++|||+.||| +++++.++++-|
T Consensus 132 -------dd-----~~~ar~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG 197 (248)
T cd04728 132 -------DD-----PVLAKRLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG 197 (248)
T ss_pred -------CC-----HHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 22 3478899999999983211111111 12234678889999889999999999 999999999999
Q ss_pred CccEEEechHhhh--CCcH
Q 017448 318 YTDLVAYGRSFLA--NPDL 334 (371)
Q Consensus 318 ~~D~V~~gR~~la--dP~l 334 (371)
+|.|.++.+... ||..
T Consensus 198 -AdgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 198 -ADAVLLNTAIAKAKDPVA 215 (248)
T ss_pred -CCEEEEChHhcCCCCHHH
Confidence 999999999876 4654
No 124
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.00 E-value=4.1e-05 Score=71.73 Aligned_cols=116 Identities=15% Similarity=0.107 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEA 243 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~ 243 (371)
+.++.+.+.||+.++|+.|.. + ...-.+.|++||+.+|++ .|.+..|.
T Consensus 88 ~~~~~~~~~Gf~~~KiKvg~~--------------------~----~~~d~~~v~~vr~~~g~~~~l~vDaN~------- 136 (263)
T cd03320 88 GEAKAAYGGGYRTVKLKVGAT--------------------S----FEEDLARLRALREALPADAKLRLDANG------- 136 (263)
T ss_pred HHHHHHHhCCCCEEEEEECCC--------------------C----hHHHHHHHHHHHHHcCCCCeEEEeCCC-------
Confidence 445666778999999986520 0 122478899999999875 34443332
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLV 322 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V 322 (371)
..+.+++..+++.|++.++.|++ +|. +..+....+.++ .++||.+...+ +..++.++++.+.+|+|
T Consensus 137 --~w~~~~A~~~~~~l~~~~i~~iE--qP~-------~~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v 203 (263)
T cd03320 137 --GWSLEEALAFLEALAAGRIEYIE--QPL-------PPDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGAL 203 (263)
T ss_pred --CCCHHHHHHHHHhhcccCCceEE--CCC-------ChHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEE
Confidence 33567899999999999999998 442 122333444555 67899988887 89999999999999998
Q ss_pred Ee
Q 017448 323 AY 324 (371)
Q Consensus 323 ~~ 324 (371)
.+
T Consensus 204 ~~ 205 (263)
T cd03320 204 VL 205 (263)
T ss_pred EE
Confidence 76
No 125
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.98 E-value=0.00011 Score=75.00 Aligned_cols=142 Identities=16% Similarity=0.146 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++...++|.|.|-|.++||. .....+.|+.||+..++-.|... +.
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~------------------------~~~~~~~i~~ik~~~p~~~vi~g-~v------- 297 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGD------------------------SIYQLEMIKYIKKTYPELDVIGG-NV------- 297 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC------------------------cHHHHHHHHHHHHhCCCCcEEEe-cC-------
Confidence 45666778899999999998852 23457889999998863333221 11
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcC--CCcc-cCCC--CCCCC---chhhHhHHHhcCCCeEeeCCC-CHHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILE--PRLF-NAQD--KLDAP---PYSLLPMRKAFDGTFIASGGY-NRDDGNKAV 314 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~--~~~~-~~~~--~~~~~---~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l 314 (371)
.+.+ -++.+.++|+|.|-++. +... .... ...+. ...+..+.+.+++|||+-||| ++.++.++|
T Consensus 298 ---~t~e----~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAl 370 (505)
T PLN02274 298 ---VTMY----QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKAL 370 (505)
T ss_pred ---CCHH----HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH
Confidence 1233 45667789999997753 2211 1110 01111 123455666778999999999 999999999
Q ss_pred HcCCccEEEechHhhhCCcHHHH--HHhCCCCC
Q 017448 315 AENYTDLVAYGRSFLANPDLPKR--FELNAALN 345 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~l~~k--~~~g~~~~ 345 (371)
+.| +|.|++|..|..--+-+-. .++|+.+.
T Consensus 371 a~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~~k 402 (505)
T PLN02274 371 TLG-ASTVMMGSFLAGTTEAPGEYFYQDGVRVK 402 (505)
T ss_pred HcC-CCEEEEchhhcccccCCcceeeeCCeEEE
Confidence 999 9999999998876654432 35666543
No 126
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.98 E-value=0.0003 Score=62.95 Aligned_cols=130 Identities=22% Similarity=0.156 Sum_probs=84.7
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE-EcCccCcCcCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR-LSPHANYMEAQD 245 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr-l~~~~~~~~~~~ 245 (371)
++.+.++|+|+|-+|+--+ ...+.++++.+|+. |- .+++- +++.
T Consensus 70 ~~~~~~aGad~i~~h~~~~-------------------------~~~~~~~i~~~~~~-g~-~~~v~~~~~~-------- 114 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAP-------------------------LSTIKKAVKAAKKY-GK-EVQVDLIGVE-------- 114 (202)
T ss_pred HHHHHhcCCCEEEEEeeCC-------------------------HHHHHHHHHHHHHc-CC-eEEEEEeCCC--------
Confidence 3667899999999986431 12346677777753 32 44443 4441
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
+.++ ..+ +...|+|++-+......... +.......++.+++..+.|+++.||++++++.++++.| +|.|.+|
T Consensus 115 --t~~e---~~~-~~~~~~d~v~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G-ad~vvvG 186 (202)
T cd04726 115 --DPEK---RAK-LLKLGVDIVILHRGIDAQAA-GGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAG-ADIVIVG 186 (202)
T ss_pred --CHHH---HHH-HHHCCCCEEEEcCccccccc-CCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcC-CCEEEEe
Confidence 2332 223 55568999887422111111 11222344556665567899999999999999999998 9999999
Q ss_pred hHhhhCCcHHHHHH
Q 017448 326 RSFLANPDLPKRFE 339 (371)
Q Consensus 326 R~~ladP~l~~k~~ 339 (371)
++++..+++...++
T Consensus 187 sai~~~~d~~~~~~ 200 (202)
T cd04726 187 RAITGAADPAEAAR 200 (202)
T ss_pred ehhcCCCCHHHHHh
Confidence 99998888655554
No 127
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.98 E-value=5.8e-05 Score=69.83 Aligned_cols=85 Identities=20% Similarity=0.175 Sum_probs=71.6
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+.|+++||+..-.... ....+...++.+.+.+.+||.+.||+ |.+++++++..| ||-|.+|-.++.|
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~~~---g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G-a~kvviGs~~l~~ 110 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDAAF---GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATG-CARVNIGTAALEN 110 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccccC---CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchHhCC
Confidence 458888999999999987643221 23345678888999999999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 017448 332 PDLPKRFELN 341 (371)
Q Consensus 332 P~l~~k~~~g 341 (371)
|+++.++.+.
T Consensus 111 p~l~~~i~~~ 120 (241)
T PRK14024 111 PEWCARVIAE 120 (241)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 128
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.97 E-value=0.00017 Score=66.14 Aligned_cols=128 Identities=15% Similarity=0.255 Sum_probs=78.9
Q ss_pred HHHHHcCCCEEecccc--cchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCC
Q 017448 168 RNAIKAGFDGVEIHGA--NGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQ 244 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~--~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~ 244 (371)
..+.++|+|+|-+|.+ + ...+.+.++.+++ .. .+++-+++.
T Consensus 82 ~~~~~~gad~v~vH~~q~~--------------------------~d~~~~~~~~i~~---~g~~iGls~~~~------- 125 (229)
T PLN02334 82 PDFAKAGASIFTFHIEQAS--------------------------TIHLHRLIQQIKS---AGMKAGVVLNPG------- 125 (229)
T ss_pred HHHHHcCCCEEEEeecccc--------------------------chhHHHHHHHHHH---CCCeEEEEECCC-------
Confidence 3447799999999987 2 0123455555554 23 567766642
Q ss_pred CCChHHHHHHHHHHHhhcC-ccEEEEcC--CCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 245 DSNPEALGLYMAKALNKYQ-ILYLHILE--PRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~G-vd~l~v~~--~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
.+.+ .++.+.+.| +||+-+.. ++.+... ........++.+++.. +.||.+.||+|.+.+.++++.| +|
T Consensus 126 --t~~~----~~~~~~~~~~~Dyi~~~~v~pg~~~~~-~~~~~~~~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aG-ad 197 (229)
T PLN02334 126 --TPVE----AVEPVVEKGLVDMVLVMSVEPGFGGQS-FIPSMMDKVRALRKKYPELDIEVDGGVGPSTIDKAAEAG-AN 197 (229)
T ss_pred --CCHH----HHHHHHhccCCCEEEEEEEecCCCccc-cCHHHHHHHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcC-CC
Confidence 1233 233343443 99985521 2111110 0111122345566663 4789999999999999999999 99
Q ss_pred EEEechHhhhCCcHHHHHH
Q 017448 321 LVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 321 ~V~~gR~~ladP~l~~k~~ 339 (371)
.|.+|++++..++....++
T Consensus 198 ~vvvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 198 VIVAGSAVFGAPDYAEVIS 216 (229)
T ss_pred EEEEChHHhCCCCHHHHHH
Confidence 9999999998888644433
No 129
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.96 E-value=0.0002 Score=65.28 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+..++.|.+.|+|.|++-.--+ .+.| .+++.+++=+.++++.++ ++.+|+=...
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~----~~~~---------------g~~~~v~~ei~~v~~~~~--~~~lKvIlEt----- 130 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIG----ALKS---------------GDWDAVEADIRAVVEAAG--GAVLKVIIET----- 130 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHH----HhcC---------------CCHHHHHHHHHHHHHhcC--CceEEEEeec-----
Confidence 4566788899999999654332 1222 225667778888888774 3566773211
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
...+.++...+++...++|+|||-.+.+. . +.......++.+++.+. ++|.+.||| |.+++.++++.| +|
T Consensus 131 -~~L~~e~i~~a~~~~~~agadfIKTsTG~-~----~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG-A~ 203 (221)
T PRK00507 131 -CLLTDEEKVKACEIAKEAGADFVKTSTGF-S----TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG-AT 203 (221)
T ss_pred -CcCCHHHHHHHHHHHHHhCCCEEEcCCCC-C----CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC-cc
Confidence 02234556788888999999999876553 1 22344566777888775 679999999 999999999999 99
Q ss_pred EEEechHh
Q 017448 321 LVAYGRSF 328 (371)
Q Consensus 321 ~V~~gR~~ 328 (371)
.++..++.
T Consensus 204 riGtS~~~ 211 (221)
T PRK00507 204 RLGTSAGV 211 (221)
T ss_pred eEccCcHH
Confidence 99998764
No 130
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.96 E-value=0.00012 Score=74.20 Aligned_cols=147 Identities=17% Similarity=0.093 Sum_probs=100.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccE
Q 017448 152 RTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVG 231 (371)
Q Consensus 152 t~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~ 231 (371)
+.+....+-++..+.++...++|.|.|-|.++||+ .+.+.+.|+.||+..++-+|.
T Consensus 217 ~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~------------------------~~~~~~~i~~ik~~~p~~~v~ 272 (479)
T PRK07807 217 RVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGH------------------------QEKMLEALRAVRALDPGVPIV 272 (479)
T ss_pred chHhhhccChhHHHHHHHHHHhCCCEEEEeccCCc------------------------cHHHHHHHHHHHHHCCCCeEE
Confidence 33444444455667777778899999999999963 255799999999998643332
Q ss_pred EEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCC---ccc-CCC-CCCCCchhhHhHHH---hcCCCeEeeC
Q 017448 232 IRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPR---LFN-AQD-KLDAPPYSLLPMRK---AFDGTFIASG 303 (371)
Q Consensus 232 vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~-~~~-~~~~~~~~~~~ik~---~~~~pVi~~G 303 (371)
. ++-.+. +-++.|.++|+|+|-|.-+. ++. ... ...+....+..+.+ ..++|||+-|
T Consensus 273 a-----------gnv~t~----~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~g 337 (479)
T PRK07807 273 A-----------GNVVTA----EGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADG 337 (479)
T ss_pred e-----------eccCCH----HHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecC
Confidence 1 011133 35566777999999865443 111 110 12233444444444 4679999999
Q ss_pred CC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 304 GY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 304 gi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
|+ ++.++.++|+.| +|.|++|..|..-.+-+-.+
T Consensus 338 gi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg~~ 372 (479)
T PRK07807 338 GVRHPRDVALALAAG-ASNVMIGSWFAGTYESPGDL 372 (479)
T ss_pred CCCCHHHHHHHHHcC-CCeeeccHhhccCccCCCce
Confidence 99 999999999998 99999999999888776543
No 131
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.94 E-value=0.00024 Score=71.42 Aligned_cols=127 Identities=21% Similarity=0.230 Sum_probs=86.1
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE-EcCccCcCcCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR-LSPHANYMEAQ 244 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr-l~~~~~~~~~~ 244 (371)
-+..|.++|.|+|-+|+... ...+.++++.+|+ .|.. +.+- +++
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~-------------------------~~~~~~~i~~a~~-~G~~-~~~g~~s~-------- 117 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLAD-------------------------DSTIEDAVRAARK-YGVR-LMADLINV-------- 117 (430)
T ss_pred HHHHHHHcCCCEEEEecCCC-------------------------hHHHHHHHHHHHH-cCCE-EEEEecCC--------
Confidence 55678899999999874320 0113567777776 4543 3321 343
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEe
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~ 324 (371)
.++. +.++.+.+.|+|||.++.+ +.... ........++.+++.+++||++.||++.+.+.++++.| +|.|.+
T Consensus 118 -~t~~----e~~~~a~~~GaD~I~~~pg-~~~~~-~~~~~~~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aG-Adgv~v 189 (430)
T PRK07028 118 -PDPV----KRAVELEELGVDYINVHVG-IDQQM-LGKDPLELLKEVSEEVSIPIAVAGGLDAETAAKAVAAG-ADIVIV 189 (430)
T ss_pred -CCHH----HHHHHHHhcCCCEEEEEec-cchhh-cCCChHHHHHHHHhhCCCcEEEECCCCHHHHHHHHHcC-CCEEEE
Confidence 1122 2456677889999977532 22111 11122356778888888999999999999999999999 999999
Q ss_pred chHhhhCCcHH
Q 017448 325 GRSFLANPDLP 335 (371)
Q Consensus 325 gR~~ladP~l~ 335 (371)
||.++..+++.
T Consensus 190 GsaI~~~~d~~ 200 (430)
T PRK07028 190 GGNIIKSADVT 200 (430)
T ss_pred ChHHcCCCCHH
Confidence 99999988753
No 132
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.92 E-value=5.3e-05 Score=69.97 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=70.4
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+.|++++|+-.-..... ....+...++.+.+.+++|++++||+ +.++++.+++.| ||.|.+|..++.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~~~--~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G-a~~v~iGs~~~~~ 111 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGAFE--GERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG-VDRVILGTAAVEN 111 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhhhc--CCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC-CCEEEEChHHhhC
Confidence 4588888899999999865432111 22345567778888889999999999 899999999988 9999999999999
Q ss_pred CcHHHHHHhCC
Q 017448 332 PDLPKRFELNA 342 (371)
Q Consensus 332 P~l~~k~~~g~ 342 (371)
|+++.++.+.-
T Consensus 112 ~~~~~~i~~~~ 122 (241)
T PRK13585 112 PEIVRELSEEF 122 (241)
T ss_pred hHHHHHHHHHh
Confidence 99999887763
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.92 E-value=0.00058 Score=61.42 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=83.7
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEE-cCccCcCcCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRL-SPHANYMEAQ 244 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl-~~~~~~~~~~ 244 (371)
.++.+.++|+|.|-+|+-.+ ...+.++++.+++. |- ++++-+ ++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------------------~~~~~~~i~~~~~~-g~-~~~~~~~~~-------- 112 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------------------DATIKGAVKAAKKH-GK-EVQVDLINV-------- 112 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-CC-EEEEEecCC--------
Confidence 46678899999999986531 02346777777763 42 455543 32
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCCCHHHHHHHHHcCCccEEE
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGYNRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggit~~~a~~~l~~g~~D~V~ 323 (371)
..+.+ .++.+.+.|+|++.+..+...... .......++.+++.++.+ +.+.||++++.+.++++.| +|.|.
T Consensus 113 -~t~~~----~~~~~~~~g~d~v~~~pg~~~~~~--~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G-a~~v~ 184 (206)
T TIGR03128 113 -KDKVK----RAKELKELGADYIGVHTGLDEQAK--GQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLG-PDIVI 184 (206)
T ss_pred -CChHH----HHHHHHHcCCCEEEEcCCcCcccC--CCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC-CCEEE
Confidence 11222 334445669999987432211111 112234566677776655 5568999999999999988 99999
Q ss_pred echHhhhCCcHHHH
Q 017448 324 YGRSFLANPDLPKR 337 (371)
Q Consensus 324 ~gR~~ladP~l~~k 337 (371)
+||+++..++....
T Consensus 185 vGsai~~~~d~~~~ 198 (206)
T TIGR03128 185 VGGAITKAADPAEA 198 (206)
T ss_pred EeehhcCCCCHHHH
Confidence 99999987775433
No 134
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.91 E-value=0.00033 Score=65.42 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANYM 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~~ 241 (371)
...++.|.+.|+|+|++..-.| .+ +..++ ++.+.+|++.+.+ . ++.|.+-+. ..
T Consensus 93 ~~~v~~al~~Ga~~v~~~~~~g-------------------~~--~~~~~-~~~~~~i~~~~~~~g~~liv~~~~~--Gv 148 (258)
T TIGR01949 93 VTTVEDAIRMGADAVSIHVNVG-------------------SD--TEWEQ-IRDLGMIAEICDDWGVPLLAMMYPR--GP 148 (258)
T ss_pred eeeHHHHHHCCCCEEEEEEecC-------------------Cc--hHHHH-HHHHHHHHHHHHHcCCCEEEEEecc--Cc
Confidence 4567778899999999765432 11 11223 3567777776632 2 444432221 00
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCC-------HHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYN-------RDDGNKAV 314 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit-------~~~a~~~l 314 (371)
..+ ..+.+.....++...+.|+|||-++. . .....++.+.+..++||++.||++ .+...+++
T Consensus 149 h~~-~~~~~~~~~~~~~a~~~GADyikt~~--------~--~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~ 217 (258)
T TIGR01949 149 HID-DRDPELVAHAARLGAELGADIVKTPY--------T--GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAM 217 (258)
T ss_pred ccc-cccHHHHHHHHHHHHHHCCCEEeccC--------C--CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 011 12234444456777889999998631 1 134567777777889999999995 45566677
Q ss_pred HcCCccEEEechHhhhCCcHHH
Q 017448 315 AENYTDLVAYGRSFLANPDLPK 336 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~l~~ 336 (371)
+.| ++.|+++|.++..++...
T Consensus 218 ~aG-a~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 218 EAG-AAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred HcC-CcEEehhhHhhcCCCHHH
Confidence 888 999999999999998443
No 135
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.91 E-value=0.00014 Score=70.31 Aligned_cols=130 Identities=16% Similarity=0.111 Sum_probs=84.8
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.+....++|.|.+-|..+||+ .+...+.++.+|+..++-+|..= |.
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~------------------------s~~~~~~ik~ik~~~~~~~viaG-NV------- 157 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH------------------------SEHVIDMIKKIKKKFPDVPVIAG-NV------- 157 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT------------------------SHHHHHHHHHHHHHSTTSEEEEE-EE-------
T ss_pred HHHHHHHHHcCCCEEEccccCcc------------------------HHHHHHHHHHHHHhCCCceEEec-cc-------
Confidence 45555667799999999999974 35567889999999984343220 11
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccC---CCCCCCCchhh---HhHHHhcCCCeEeeCCC-CHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPR---LFNA---QDKLDAPPYSL---LPMRKAFDGTFIASGGY-NRDDGNKA 313 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~---~~~~~~~~~~~---~~ik~~~~~pVi~~Ggi-t~~~a~~~ 313 (371)
-+ .+-++.|.++|+|.|-|.-+. +... . -..+....+ ...++...+|||+-||+ +.-|..++
T Consensus 158 ---~T----~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~G-vG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KA 229 (352)
T PF00478_consen 158 ---VT----YEGAKDLIDAGADAVKVGIGPGSICTTREVTG-VGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKA 229 (352)
T ss_dssp ----S----HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHS-BSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHH
T ss_pred ---CC----HHHHHHHHHcCCCEEEEeccCCcccccccccc-cCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeee
Confidence 12 345667888999999986542 1100 1 112223332 23455567999999999 89999999
Q ss_pred HHcCCccEEEechHhhhCCcH
Q 017448 314 VAENYTDLVAYGRSFLANPDL 334 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ladP~l 334 (371)
|.-| +|.||||+.|-.--+-
T Consensus 230 la~G-Ad~VMlG~llAgt~Es 249 (352)
T PF00478_consen 230 LAAG-ADAVMLGSLLAGTDES 249 (352)
T ss_dssp HHTT--SEEEESTTTTTBTTS
T ss_pred eeec-ccceeechhhccCcCC
Confidence 9999 9999999988765543
No 136
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.91 E-value=0.00021 Score=69.79 Aligned_cols=118 Identities=12% Similarity=0.197 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+++.+.++.+.+.||..++|+.+. ..-++.|++||+++| + +.+++..+.
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv~~---------------------------~~d~~~l~~vr~~~g-~-~~l~lDaN~-- 187 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKIKP---------------------------GWDVEPLKAVRERFP-D-IPLMADANS-- 187 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEecCh---------------------------HHHHHHHHHHHHHCC-C-CeEEEECCC--
Confidence 345666777778899999998631 013678999999998 4 334444321
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
..+.+++. +++.|++.++.|++ +|. ...+....+.+++.+++||.+...+ +++++..+++.+.+
T Consensus 188 -----~~~~~~a~-~~~~l~~~~i~~iE--eP~-------~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~ 252 (354)
T cd03317 188 -----AYTLADIP-LLKRLDEYGLLMIE--QPL-------AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGAC 252 (354)
T ss_pred -----CCCHHHHH-HHHHhhcCCccEEE--CCC-------ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCC
Confidence 22344554 78999999999998 542 2233456778899999999887777 89999999999989
Q ss_pred cEEEe
Q 017448 320 DLVAY 324 (371)
Q Consensus 320 D~V~~ 324 (371)
|.|.+
T Consensus 253 d~~~i 257 (354)
T cd03317 253 KIINI 257 (354)
T ss_pred CEEEe
Confidence 98865
No 137
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.90 E-value=0.00016 Score=73.65 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
..+-|+...++|+|.|+|..+||+ .+..++.|+.+|+.++.+ +.|.-.-
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~------------------------~~~~~~~i~~ir~~~~~~-~~V~aGn------ 291 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGY------------------------SEWQKRTLDWIREKYGDS-VKVGAGN------ 291 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccc------------------------cHHHHHHHHHHHHhCCCC-ceEEecc------
Confidence 445666678899999999888852 234578999999988642 2222211
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCc---ccC-CC-CCCCCchhhHhHHHhc-------C--CCeEeeCCC-CH
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRL---FNA-QD-KLDAPPYSLLPMRKAF-------D--GTFIASGGY-NR 307 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~---~~~-~~-~~~~~~~~~~~ik~~~-------~--~pVi~~Ggi-t~ 307 (371)
-.+. +-++.|.++|+|+|-|..+.- ... .. .+.+....+..+.++. + +|||+-||+ +.
T Consensus 292 ---V~t~----e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~ 364 (502)
T PRK07107 292 ---VVDR----EGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYD 364 (502)
T ss_pred ---ccCH----HHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCch
Confidence 1123 345566789999998754321 111 00 1222333344344432 3 799999999 88
Q ss_pred HHHHHHHHcCCccEEEechHhhhCCcHH
Q 017448 308 DDGNKAVAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 308 ~~a~~~l~~g~~D~V~~gR~~ladP~l~ 335 (371)
-+..++|+-| +|+||+||.|-.--+-|
T Consensus 365 gdi~KAla~G-A~~vm~G~~~ag~~esp 391 (502)
T PRK07107 365 YHMTLALAMG-ADFIMLGRYFARFDESP 391 (502)
T ss_pred hHHHHHHHcC-CCeeeeChhhhccccCC
Confidence 9999999999 99999999997754433
No 138
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=97.90 E-value=0.00024 Score=68.16 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=82.9
Q ss_pred HcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHH
Q 017448 172 KAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEAL 251 (371)
Q Consensus 172 ~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~ 251 (371)
+.||..++|+.|.+ + ...-.+.|++||+++|++ +.+|+..+. ..+.++
T Consensus 122 ~~Gf~~~KiKvG~~--------------------~----~~~d~~~v~~vr~~~g~~-~~l~vDaN~-------~w~~~~ 169 (307)
T TIGR01927 122 AEGFRTFKWKVGVG--------------------E----LAREGMLVNLLLEALPDK-AELRLDANG-------GLSPDE 169 (307)
T ss_pred hCCCCEEEEEeCCC--------------------C----hHHHHHHHHHHHHHcCCC-CeEEEeCCC-------CCCHHH
Confidence 67999999987531 1 223478899999999864 334444421 345677
Q ss_pred HHHHHHHHhh---cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 252 GLYMAKALNK---YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 252 ~~~la~~l~~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
+.++++.|++ .+++||+ +|- +.....+.+++.+++||.+...+ +..++.++++.+.+|+|.+
T Consensus 170 A~~~~~~l~~~~~~~i~~iE--qP~---------~~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 170 AQQFLKALDPNLRGRIAFLE--EPL---------PDADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred HHHHHHhcccccCCCceEEe--CCC---------CCHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 9999999997 7899998 432 12256777999999999888887 8999999999998998875
No 139
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.90 E-value=0.00045 Score=63.12 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHc-CCCEEec--ccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc
Q 017448 161 NDFRLAGRNAIKA-GFDGVEI--HGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH 237 (371)
Q Consensus 161 ~~f~~aA~~a~~a-G~DgVei--~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~ 237 (371)
++-++.|+.|.|+ |-|-|+| +....|| .--+.+.|++.++.+.+....+=+..
T Consensus 76 ~eAv~~a~lare~~~~~~iKlEVi~d~~~l-----------------------lpd~~~tv~aa~~L~~~Gf~vlpyc~- 131 (250)
T PRK00208 76 EEAVRTARLAREALGTNWIKLEVIGDDKTL-----------------------LPDPIETLKAAEILVKEGFVVLPYCT- 131 (250)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEecCCCCC-----------------------CcCHHHHHHHHHHHHHCCCEEEEEeC-
Confidence 3457888888885 5577754 3322111 11257888999888865443332222
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHc
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAE 316 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~ 316 (371)
++ ..++++|++.|.+++-....-.+.. .+..+.+.++.+++..++|||+.||| +++++.++++-
T Consensus 132 --------~d-----~~~ak~l~~~G~~~vmPlg~pIGsg--~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Amel 196 (250)
T PRK00208 132 --------DD-----PVLAKRLEEAGCAAVMPLGAPIGSG--LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMEL 196 (250)
T ss_pred --------CC-----HHHHHHHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHc
Confidence 22 3478899999999993211111111 12234667888999889999999999 99999999999
Q ss_pred CCccEEEechHhhh--CCcH
Q 017448 317 NYTDLVAYGRSFLA--NPDL 334 (371)
Q Consensus 317 g~~D~V~~gR~~la--dP~l 334 (371)
| +|.|.++-+... ||..
T Consensus 197 G-AdgVlV~SAItka~dP~~ 215 (250)
T PRK00208 197 G-ADAVLLNTAIAVAGDPVA 215 (250)
T ss_pred C-CCEEEEChHhhCCCCHHH
Confidence 8 999999999876 4644
No 140
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.89 E-value=0.00028 Score=65.30 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCc-c
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENR----------CRFALEIVEAVVNEIGAE-R 229 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR----------~r~~~eiv~avR~~vg~~-~ 229 (371)
+.+.+.++...++|+|.+||.. |.++---| |-.++|- .++..++++.+|+.+... .
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~i-----------PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~ 80 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV 80 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE
Confidence 4678889999999999999983 33333333 3333332 257899999999987322 2
Q ss_pred cEEEEcCc-----cCcC----cC------CCCChHHHHHHHHHHHhhcCccEEEEcCCCccc----------C-------
Q 017448 230 VGIRLSPH-----ANYM----EA------QDSNPEALGLYMAKALNKYQILYLHILEPRLFN----------A------- 277 (371)
Q Consensus 230 i~vrl~~~-----~~~~----~~------~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------~------- 277 (371)
+.+.+|+. +.+. .. ..+.+.|+...+.+.+.+.|++.+-+..+.... .
T Consensus 81 lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s 160 (242)
T cd04724 81 LMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVS 160 (242)
T ss_pred EEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEe
Confidence 44566651 1110 00 012255666677777788887776544332100 0
Q ss_pred ---CCCC-----CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 278 ---QDKL-----DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 278 ---~~~~-----~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
..+. ......++.+|+..+.||++.||+ +.+++.++++. +|.|.+|.+++
T Consensus 161 ~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 161 RTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred CCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 0000 011234677888888999999999 68899987765 99999998876
No 141
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.88 E-value=0.0015 Score=60.90 Aligned_cols=51 Identities=25% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCchhhHhHHHhcCCCeE--eeCCC-CHHHHHHHHHcCCccEEEechHhhh--CCcH
Q 017448 283 APPYSLLPMRKAFDGTFI--ASGGY-NRDDGNKAVAENYTDLVAYGRSFLA--NPDL 334 (371)
Q Consensus 283 ~~~~~~~~ik~~~~~pVi--~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la--dP~l 334 (371)
....+++.+++..++||+ +.||| |++++..+++.| ||.|++|++++. ||..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCCHHH
Confidence 345678888888899998 99999 999999999998 999999999996 5643
No 142
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.87 E-value=0.0005 Score=64.15 Aligned_cols=155 Identities=14% Similarity=0.089 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchh---hh-------hHHHHHHHHHHHHH-hCCcc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLE---NR-------CRFALEIVEAVVNE-IGAER 229 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~e---nR-------~r~~~eiv~avR~~-vg~~~ 229 (371)
+.+.+.++...++|+|.|||-. |.++--.| |--++ +| .+-++++++++|+. .. .|
T Consensus 24 ~~~~~~~~~l~~~Gad~iElGi-----------PfsDP~aD--GpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~-~p 89 (256)
T TIGR00262 24 ETSLEIIKTLIEAGADALELGV-----------PFSDPLAD--GPTIQAADLRALRAGMTPEKCFELLKKVRQKHPN-IP 89 (256)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-----------CCCCCCCc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CC
Confidence 4567778888899999999854 44554445 32221 11 24578889999876 32 23
Q ss_pred --cEEEEcCc-----cCc-C-----cC----CCCChHHHHHHHHHHHhhcCccEEEEcCCCccc----------------
Q 017448 230 --VGIRLSPH-----ANY-M-----EA----QDSNPEALGLYMAKALNKYQILYLHILEPRLFN---------------- 276 (371)
Q Consensus 230 --i~vrl~~~-----~~~-~-----~~----~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~---------------- 276 (371)
+..-.|+. +.+ . +. ..+.+.++..++.+.+.+.|++.+-+..++...
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 22233330 000 0 00 114456666777777788887766444332110
Q ss_pred ---CCCCC------CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 ---AQDKL------DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 ---~~~~~------~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
....+ ......++.+|+..+.||++.||+ |++++.++++.| +|.|.+|.+++.
T Consensus 170 vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~ 232 (256)
T TIGR00262 170 VSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK 232 (256)
T ss_pred EECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 00001 112345678888888999999999 799999999998 999999999874
No 143
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=97.87 E-value=0.00021 Score=68.99 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=83.7
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHH
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
.||..++|+.|. .|.++ +--.+.|++||+++|++ +.+|+..+. ..+.+++
T Consensus 101 ~G~~~~KvKVg~------------------~~~~~----~~Di~rv~avRe~lGpd-~~LrvDAN~-------~ws~~~A 150 (327)
T PRK02901 101 PGCRTAKVKVAE------------------PGQTL----ADDVARVNAVRDALGPD-GRVRVDANG-------GWSVDEA 150 (327)
T ss_pred CCCCEEEEEECC------------------CCCCH----HHHHHHHHHHHHhcCCC-CEEEEECCC-------CCCHHHH
Confidence 599999999763 12233 33478899999999975 344444421 3467889
Q ss_pred HHHHHHH-hhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 253 LYMAKAL-NKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 253 ~~la~~l-~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
+.+++.| ++.++.|++ +| ......+..+++.+++||.+...+ +..+..++++.+.+|++.+
T Consensus 151 i~~~~~L~e~~~l~~iE--qP---------~~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 151 VAAARALDADGPLEYVE--QP---------CATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred HHHHHHhhhccCceEEe--cC---------CCCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 9999999 778899998 43 122456677999999999888777 8999999999999998864
No 144
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.86 E-value=0.00037 Score=62.62 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=43.6
Q ss_pred hhHhHHHhcC-----CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 287 SLLPMRKAFD-----GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 287 ~~~~ik~~~~-----~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
.++.+|+.++ .|+++.||++++++.++++.| +|.|.+|++++..++....++
T Consensus 152 ~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHH
Confidence 3455666653 899999999999999999988 999999999999998776665
No 145
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00012 Score=66.61 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=73.1
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.+.++.+.+.|..++|+..-.-... ..+.+...+++|.+.+++||-.+||| +.+.++.+++.| ++.|.+|...+.|
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~--g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G-~~rViiGt~av~~ 110 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKA--GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAG-VARVIIGTAAVKN 110 (241)
T ss_pred HHHHHHHHHcCCcEEEEeecccccc--CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-CCEEEEecceecC
Confidence 4588889999999999875321111 23456688999999999999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhCCC
Q 017448 332 PDLPKRFELNAA 343 (371)
Q Consensus 332 P~l~~k~~~g~~ 343 (371)
|+|++++.+--+
T Consensus 111 p~~v~~~~~~~g 122 (241)
T COG0106 111 PDLVKELCEEYG 122 (241)
T ss_pred HHHHHHHHHHcC
Confidence 999999877543
No 146
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.84 E-value=0.00016 Score=64.22 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=93.3
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCCh
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNP 248 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~ 248 (371)
.|.+||+|-|||- + .+.|... |=.++ ..-++++.+..|+-+++-+++|.+-- -.+
T Consensus 76 ~aV~AGAdliEIG--N---fDsFY~q---------Gr~f~--a~eVL~Lt~~tR~LLP~~~LsVTVPH---------iL~ 130 (242)
T PF04481_consen 76 AAVKAGADLIEIG--N---FDSFYAQ---------GRRFS--AEEVLALTRETRSLLPDITLSVTVPH---------ILP 130 (242)
T ss_pred HHHHhCCCEEEec--c---hHHHHhc---------CCeec--HHHHHHHHHHHHHhCCCCceEEecCc---------ccc
Confidence 4567999999982 2 2444421 11111 34578889999999976578887642 345
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCC--------CCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKL--------DAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~--------~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
.++=..++..|+++|+|+|--.+++-..+..+. .+-......|.+.+++||++..|++.-.+--++..| +.
T Consensus 131 ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaG-As 209 (242)
T PF04481_consen 131 LDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAG-AS 209 (242)
T ss_pred HHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcC-Cc
Confidence 666789999999999999986544433332111 011123346888999999999999888888899998 89
Q ss_pred EEEechHh
Q 017448 321 LVAYGRSF 328 (371)
Q Consensus 321 ~V~~gR~~ 328 (371)
.|++|.+.
T Consensus 210 GVGVGSav 217 (242)
T PF04481_consen 210 GVGVGSAV 217 (242)
T ss_pred ccchhHHh
Confidence 99999775
No 147
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.84 E-value=0.0034 Score=59.20 Aligned_cols=190 Identities=17% Similarity=0.095 Sum_probs=116.5
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCccc--------CCCC--CCCCCCCCCCCCCCCCChHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC--------TSKG--VTPGLGGGDWSPPRPLRTEEIPQ 158 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~p--------s~~~--~~~~~~g~~~~~~~~mt~~eI~~ 158 (371)
.+..+-+++++.+.++++++|+......- . +...+.+ +.+| ++ .+ +..+.
T Consensus 28 ~e~~~avi~AAe~~~sPvIl~~~~~~~~~-~-----g~~~~~~~~~~~A~~~~vPV~lH-------LD--H~~~~----- 87 (283)
T PRK07998 28 LETTISILNAIERSGLPNFIQIAPTNAQL-S-----GYDYIYEIVKRHADKMDVPVSLH-------LD--HGKTF----- 87 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcHhHHhh-C-----CHHHHHHHHHHHHHHCCCCEEEE-------Cc--CCCCH-----
Confidence 56788899999999999999996432110 0 0000110 0011 11 01 11222
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEc---
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLS--- 235 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~--- 235 (371)
+.+++|.++||+.|-+.+.+ =++++..+...++++..+. .|- .|-.-|.
T Consensus 88 ------e~i~~Ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~-~gv-~VEaElG~vg 139 (283)
T PRK07998 88 ------EDVKQAVRAGFTSVMIDGAA--------------------LPFEENIAFTKEAVDFAKS-YGV-PVEAELGAIL 139 (283)
T ss_pred ------HHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC-EEEEEeccCC
Confidence 34446778899999987654 1467778889999998876 442 2222222
Q ss_pred CccCcC--cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 236 PHANYM--EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 236 ~~~~~~--~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
..++.. +.....+.+++.+|++ +.|+|.|-++-|+....++.+.-+.+.++.|++.+++|++.=|+ +..++..
T Consensus 140 g~ed~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~ 216 (283)
T PRK07998 140 GKEDDHVSEADCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILR 216 (283)
T ss_pred CccccccccccccCCHHHHHHHHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHH
Confidence 111110 0001124555655544 56999999988887666633333456789999999999766555 5778999
Q ss_pred HHHHcCCccEEEechHhhh
Q 017448 312 KAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~la 330 (371)
++++.| +-=|-+++.+..
T Consensus 217 ~ai~~G-i~KiNi~Tel~~ 234 (283)
T PRK07998 217 SFVNYK-VAKVNIASDLRK 234 (283)
T ss_pred HHHHcC-CcEEEECHHHHH
Confidence 999999 677888887643
No 148
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.83 E-value=0.00013 Score=73.90 Aligned_cols=144 Identities=16% Similarity=0.070 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE
Q 017448 154 EEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR 233 (371)
Q Consensus 154 ~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr 233 (371)
+....+-++..+-++...++|.|.|-|..+||+ .+.+.+.|+.||+..++-+|.+
T Consensus 217 gaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~------------------------~~~~~~~i~~i~~~~~~~~vi~- 271 (475)
T TIGR01303 217 GAAVGINGDVGGKAKALLDAGVDVLVIDTAHGH------------------------QVKMISAIKAVRALDLGVPIVA- 271 (475)
T ss_pred hheeeeCccHHHHHHHHHHhCCCEEEEeCCCCC------------------------cHHHHHHHHHHHHHCCCCeEEE-
Confidence 333333345556677777899999999999952 3668999999999875435544
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCCC--CCCCchhhHhH---HHhcCCCeEeeCCC
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQDK--LDAPPYSLLPM---RKAFDGTFIASGGY 305 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~~--~~~~~~~~~~i---k~~~~~pVi~~Ggi 305 (371)
. .-.+. +-++.|.++|+|+|.|..+. +....-. ..+.......+ .+..++|||+-||+
T Consensus 272 -g---------~~~t~----~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi 337 (475)
T TIGR01303 272 -G---------NVVSA----EGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGV 337 (475)
T ss_pred -e---------ccCCH----HHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 1 01133 35566778999999976542 1111100 11111111112 22348999999999
Q ss_pred -CHHHHHHHHHcCCccEEEechHhhhCCcHHHH
Q 017448 306 -NRDDGNKAVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 306 -t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
++.+..++|.-| +|.||+|+.|-.--+-|-.
T Consensus 338 ~~~~di~kala~G-A~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 338 RHPRDVALALAAG-ASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred CCHHHHHHHHHcC-CCEEeechhhcccccCCCc
Confidence 999999999999 9999999988765554433
No 149
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.83 E-value=9.7e-05 Score=68.23 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhC-
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLAN- 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~lad- 331 (371)
.++|+.+++.|+++||+..- +.. +...++.|.+.+++||..+||++.++++++++.| +|.|.+|..++.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~-n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a~rVvIGS~av~~~ 111 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPN-NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-ASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCC-cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-CCEEEECcHHHhCC
Confidence 45899999999999999765 223 6778888999999999999999669999999999 9999999999998
Q ss_pred ---CcHHHHHHhC
Q 017448 332 ---PDLPKRFELN 341 (371)
Q Consensus 332 ---P~l~~k~~~g 341 (371)
|++.+++.+-
T Consensus 112 ~i~~~~~~~i~~~ 124 (253)
T TIGR02129 112 KFDLKRLKEIVSL 124 (253)
T ss_pred CCCHHHHHHHHHH
Confidence 7788887764
No 150
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.81 E-value=0.0016 Score=58.10 Aligned_cols=80 Identities=16% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHhhcCccEEEEcCCCcccCCCC---CCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 258 ALNKYQILYLHILEPRLFNAQDK---LDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~~---~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
+..+.|+||+-++. -+....++ +......++.+++.. ++||++.||++++++.++++.| +|+|++++++...+|
T Consensus 111 ~a~~~g~dyi~~~~-v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~d 188 (196)
T TIGR00693 111 EAEAEGADYIGFGP-IFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAAD 188 (196)
T ss_pred HHhHcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCC
Confidence 35567999998742 22221111 112345666777665 4899999999999999999988 999999999998777
Q ss_pred HHHHHH
Q 017448 334 LPKRFE 339 (371)
Q Consensus 334 l~~k~~ 339 (371)
....++
T Consensus 189 p~~~~~ 194 (196)
T TIGR00693 189 PKAAAK 194 (196)
T ss_pred HHHHHH
Confidence 555443
No 151
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.81 E-value=0.00039 Score=66.33 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=90.1
Q ss_pred HHHHHHHHHH-cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 163 FRLAGRNAIK-AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~-aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
|.+..++... +|.|.|-|..+||+ ....++.|+.||+..++.+|..
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh------------------------s~~~i~~ik~ik~~~P~~~vIa--------- 156 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY------------------------SEHFVQFVAKAREAWPDKTICA--------- 156 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHHhCCCCcEEE---------
Confidence 4444444443 79999999999974 3567999999999986533221
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCC--CCCCCchhhH---hHHHhcCCCeEeeCCC-CHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQD--KLDAPPYSLL---PMRKAFDGTFIASGGY-NRDDGNK 312 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~--~~~~~~~~~~---~ik~~~~~pVi~~Ggi-t~~~a~~ 312 (371)
++-.+ .+.++.|.++|+|.+-|.-+. +..... ...+....+. ...+..++|||+-||+ +.-+..+
T Consensus 157 --GNV~T----~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~K 230 (346)
T PRK05096 157 --GNVVT----GEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAK 230 (346)
T ss_pred --ecccC----HHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHH
Confidence 00112 346677888999998775432 111110 1122233222 3344568999999999 7899999
Q ss_pred HHHcCCccEEEechHhhhCCcHHHH
Q 017448 313 AVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
+|..| +|+||+|.-|-..-+-|-.
T Consensus 231 AlaaG-Ad~VMlGsllAGt~EsPGe 254 (346)
T PRK05096 231 AFGGG-ADFVMLGGMLAGHEESGGE 254 (346)
T ss_pred HHHcC-CCEEEeChhhcCcccCCCc
Confidence 99998 9999999988776655443
No 152
>PRK08185 hypothetical protein; Provisional
Probab=97.81 E-value=0.002 Score=60.84 Aligned_cols=192 Identities=13% Similarity=0.073 Sum_probs=110.9
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccC-CCCC---C-CCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTY-GFQP---N-GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~-~~~~---~-~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
.+..+-++++..+.++++++|+......-.. .+.. . -...--|-.+.++ +..+.
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLD-----------Hg~~~---------- 81 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLD-----------HGATI---------- 81 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECC-----------CCCCH----------
Confidence 5677889999999999999999764321000 0000 0 0000001111111 11121
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~~ 240 (371)
+..+.|.++||+.|-|.+.+ -+++...+...++++-++.. |-. -||. +...++.
T Consensus 82 -e~i~~ai~~Gf~SVM~D~S~--------------------l~~eeNi~~t~~vv~~a~~~-gv~vE~ElG~-vg~~e~~ 138 (283)
T PRK08185 82 -EDVMRAIRCGFTSVMIDGSL--------------------LPYEENVALTKEVVELAHKV-GVSVEGELGT-IGNTGTS 138 (283)
T ss_pred -HHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCeEEEEEee-ccCcccc
Confidence 23455567888888877655 14677788899998888753 322 2444 4322111
Q ss_pred CcCCC----CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC---CCCCchhhHhHHHhcCCCeEeeCCC--CHHHHH
Q 017448 241 MEAQD----SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK---LDAPPYSLLPMRKAFDGTFIASGGY--NRDDGN 311 (371)
Q Consensus 241 ~~~~~----~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~---~~~~~~~~~~ik~~~~~pVi~~Ggi--t~~~a~ 311 (371)
...+. -...+++.++. ++.|+|+|-++-|+.+..+.. +.-..+.++.|++.+++|++.=|+. ..++..
T Consensus 139 ~~~~~~~~~~t~peea~~f~---~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~ 215 (283)
T PRK08185 139 IEGGVSEIIYTDPEQAEDFV---SRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIA 215 (283)
T ss_pred cccccccccCCCHHHHHHHH---HhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHH
Confidence 00010 11344444443 344999999977776554422 2234567889999999998888886 568889
Q ss_pred HHHHcCCccEEEechHh
Q 017448 312 KAVAENYTDLVAYGRSF 328 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~ 328 (371)
++++.| +-=|=++..+
T Consensus 216 ~ai~~G-I~KiNi~T~l 231 (283)
T PRK08185 216 ESVQLG-VGKINISSDM 231 (283)
T ss_pred HHHHCC-CeEEEeChHH
Confidence 999999 4556666554
No 153
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.79 E-value=0.0011 Score=60.21 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=60.4
Q ss_pred HHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 256 AKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 256 a~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
++.+.+.|++++-++...... . ......++.+++.+ ++||++.||+ +++++.++++.| +|.|.+|++++..+
T Consensus 134 ~~~~~~~g~~~i~~t~~~~~~-~---~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a~gvivGsai~~~~ 208 (217)
T cd00331 134 LERALALGAKIIGINNRDLKT-F---EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-ADAVLIGESLMRAP 208 (217)
T ss_pred HHHHHHcCCCEEEEeCCCccc-c---CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-CCEEEECHHHcCCC
Confidence 455677899999887433221 1 22346677788774 5799999999 899999999998 99999999999888
Q ss_pred cHHHHHH
Q 017448 333 DLPKRFE 339 (371)
Q Consensus 333 ~l~~k~~ 339 (371)
+..+.++
T Consensus 209 ~p~~~~~ 215 (217)
T cd00331 209 DPGAALR 215 (217)
T ss_pred CHHHHHH
Confidence 8766554
No 154
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.78 E-value=0.00073 Score=62.12 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC---CH----HHHHHHHHcCCccEEEec
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY---NR----DDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi---t~----~~a~~~l~~g~~D~V~~g 325 (371)
...++...+.|+|||-+.. + .....++++.+..++||++.||+ |+ +.+.++++.| ++.|++|
T Consensus 146 ~~~~~~a~~~GaD~Ik~~~--------~--~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G-a~gv~vg 214 (235)
T cd00958 146 AYAARIGAELGADIVKTKY--------T--GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG-AAGVAVG 214 (235)
T ss_pred HHHHHHHHHHCCCEEEecC--------C--CCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC-CcEEEec
Confidence 3346777889999998731 1 13456788888888998887875 44 4477888888 9999999
Q ss_pred hHhhhCCcHHHHHH
Q 017448 326 RSFLANPDLPKRFE 339 (371)
Q Consensus 326 R~~ladP~l~~k~~ 339 (371)
|.++..||....++
T Consensus 215 ~~i~~~~dp~~~~~ 228 (235)
T cd00958 215 RNIFQRPDPVAMLR 228 (235)
T ss_pred hhhhcCCCHHHHHH
Confidence 99999998655443
No 155
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.77 E-value=0.00012 Score=67.47 Aligned_cols=85 Identities=12% Similarity=0.063 Sum_probs=70.2
Q ss_pred HHHHHHhh-cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 254 YMAKALNK-YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 254 ~la~~l~~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
++++.+.+ .|++.|||..-..... ....+...++.+.+.+.+||...||+ |.++++++++.| ||-|.+|...+.|
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~a~~--~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a~~~ 111 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIGAKA--QHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKGIQD 111 (234)
T ss_pred HHHHHHHhccCCCEEEEEECccccc--CCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchHhcC
Confidence 47888888 6899999876432211 23346678888888889999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 017448 332 PDLPKRFELN 341 (371)
Q Consensus 332 P~l~~k~~~g 341 (371)
|++++++.+-
T Consensus 112 ~~~l~~~~~~ 121 (234)
T PRK13587 112 TDWLKEMAHT 121 (234)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 156
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.76 E-value=0.00044 Score=65.00 Aligned_cols=138 Identities=17% Similarity=0.097 Sum_probs=82.5
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHANY 240 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~~ 240 (371)
+...++.|.+.|+|+|++..-.| .+. + +..++.+.+|++.+... ++.+ ..+...
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g--------------~~~-----~---~~~~~~~~~v~~~~~~~g~pl~v--i~~~~g 150 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVG--------------SET-----E---AEMLEDLGEVAEECEEWGMPLLA--MMYPRG 150 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecC--------------Chh-----H---HHHHHHHHHHHHHHHHcCCcEEE--EEecCC
Confidence 45667788999999999764332 110 1 12344555555555211 3322 111111
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCC---HHHHHH----H
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYN---RDDGNK----A 313 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit---~~~a~~----~ 313 (371)
.......+.+.....++...+.|+|||-.+ + .. ....++.+.+..++||++.||++ .+++.+ +
T Consensus 151 ~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---~-----~~--~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~ 220 (267)
T PRK07226 151 PGIKNEYDPEVVAHAARVAAELGADIVKTN---Y-----TG--DPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDA 220 (267)
T ss_pred CccCCCccHHHHHHHHHHHHHHCCCEEeeC---C-----CC--CHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 111111233444555677788999999653 1 11 23556666666789999999985 344444 4
Q ss_pred HHcCCccEEEechHhhhCCcHH
Q 017448 314 VAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ladP~l~ 335 (371)
++.| ++++++||.++..|+-.
T Consensus 221 ~~aG-A~Gis~gr~i~~~~~p~ 241 (267)
T PRK07226 221 MEAG-AAGVAVGRNVFQHEDPE 241 (267)
T ss_pred HHcC-CcEEehhhhhhcCCCHH
Confidence 5887 89999999999998843
No 157
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=97.75 E-value=0.00051 Score=66.40 Aligned_cols=117 Identities=13% Similarity=0.117 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
++++.+++..+.||..++|+.+ + .. -.+.++++|++++ + +.+++..+.
T Consensus 135 ~~~~~a~~~~~~Gf~~~KiKv~----------~----~~-------------d~~~v~~vr~~~~-~-~~l~vDaN~--- 182 (324)
T TIGR01928 135 QMLKQIESLKATGYKRIKLKIT----------P----QI-------------MHQLVKLRRLRFP-Q-IPLVIDANE--- 182 (324)
T ss_pred HHHHHHHHHHHcCCcEEEEEeC----------C----ch-------------hHHHHHHHHHhCC-C-CcEEEECCC---
Confidence 4566667777889999999863 1 11 2578999999995 3 334444422
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
..+.+.+ ..++.|++.++.|++ +|. ...+....+.+++.+++||.+...+ ++.+..++++.+.+|
T Consensus 183 ----~~~~~~a-~~~~~l~~~~~~~iE--eP~-------~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d 248 (324)
T TIGR01928 183 ----SYDLQDF-PRLKELDRYQLLYIE--EPF-------KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVK 248 (324)
T ss_pred ----CCCHHHH-HHHHHHhhCCCcEEE--CCC-------ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCC
Confidence 1233444 568999999999998 542 2234556788999999999988777 899999999999999
Q ss_pred EEEe
Q 017448 321 LVAY 324 (371)
Q Consensus 321 ~V~~ 324 (371)
.+.+
T Consensus 249 vi~~ 252 (324)
T TIGR01928 249 VINI 252 (324)
T ss_pred EEEe
Confidence 8875
No 158
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.73 E-value=0.00025 Score=69.13 Aligned_cols=107 Identities=22% Similarity=0.188 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC---C----CCCC
Q 017448 211 CRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ---D----KLDA 283 (371)
Q Consensus 211 ~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~---~----~~~~ 283 (371)
..-+.+.|+.+|+..+..+|+||+... ...++ ++..+.++|+|+|+|....-..-. . ..-+
T Consensus 187 ~edl~~~I~~Lr~~~~~~pVgvKl~~~---------~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP 254 (368)
T PF01645_consen 187 IEDLAQLIEELRELNPGKPVGVKLVAG---------RGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP 254 (368)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEEEE-S---------TTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEECCC---------CcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc
Confidence 455789999999998656999999873 23332 222377889999999753211100 0 1111
Q ss_pred CchhhHhHHHhc-------CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 284 PPYSLLPMRKAF-------DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 284 ~~~~~~~ik~~~-------~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
....+..+.+.+ .+.+++.|++ |+.++.++|.-| +|.|.+||+++-
T Consensus 255 ~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~li 308 (368)
T PF01645_consen 255 TEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALG-ADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-SHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcC-CCeeEecchhhh
Confidence 112222333322 3569999999 999999999999 999999999874
No 159
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.72 E-value=0.0033 Score=59.43 Aligned_cols=191 Identities=9% Similarity=0.019 Sum_probs=115.8
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCC--CC-----CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQP--NG-----EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVN 161 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~--~~-----~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~ 161 (371)
.+..+.+++++.+.++++++|+......- ..... .- ...--|-.+.++ ... +
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~-~~~~~~~~~~~~~a~~~~VPValHLD---------Hg~--~--------- 86 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKH-IALEEIYALCSAYSTTYNMPLALHLD---------HHE--S--------- 86 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECC---------CCC--C---------
Confidence 46788899999999999999986532210 00000 00 000011112111 111 1
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCcc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~ 238 (371)
.+.+++|.++||+-|-+.+.+- ++|...++..|+++-.+.. |-. -|| ++...+
T Consensus 87 --~e~i~~ai~~GFtSVM~DgS~l--------------------p~eeNi~~T~evv~~Ah~~-gv~VEaElG-~igg~e 142 (286)
T PRK12738 87 --LDDIRRKVHAGVRSAMIDGSHF--------------------PFAENVKLVKSVVDFCHSQ-DCSVEAELG-RLGGVE 142 (286)
T ss_pred --HHHHHHHHHcCCCeEeecCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCeEEEEEE-eeCCcc
Confidence 3566778889999999987661 3677899999999998873 221 132 122111
Q ss_pred Cc---Cc-CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 239 NY---ME-AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 239 ~~---~~-~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
+. .. .....+.+++.+|++ +.|||.|.++-|+....++ .+.-+.+.+++|++.+++|++.=|+ +..++..
T Consensus 143 d~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~ 219 (286)
T PRK12738 143 DDMSVDAESAFLTDPQEAKRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVR 219 (286)
T ss_pred CCcccccchhcCCCHHHHHHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 11 00 000224566666644 5599999999888766552 2333456788999999999765554 5778899
Q ss_pred HHHHcCCccEEEechHh
Q 017448 312 KAVAENYTDLVAYGRSF 328 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~ 328 (371)
++++.| +-=|=++..+
T Consensus 220 kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 220 RTIELG-VTKVNVATEL 235 (286)
T ss_pred HHHHcC-CeEEEeCcHH
Confidence 999999 4446666554
No 160
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.71 E-value=0.0024 Score=60.33 Aligned_cols=193 Identities=10% Similarity=0.008 Sum_probs=117.6
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcc-ccCC-CC---CC-CCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRV-STYG-FQ---PN-GEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~-~~~~-~~---~~-~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+...... .... +. .. -...--|-.+.++ .. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLD---------Hg--~~---------- 86 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLD---------HH--EK---------- 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECC---------CC--CC----------
Confidence 4678889999999999999999754221 0000 00 00 0000011111111 11 12
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~ 239 (371)
-+..++|.++||+-|-+.+.+- ++|...+...++++-.+.. |-. -|| ++...++
T Consensus 87 -~e~i~~Ai~~GftSVM~DgS~l--------------------~~eeNi~~T~~vv~~Ah~~-gv~VEaElG-~vgg~e~ 143 (284)
T PRK09195 87 -FDDIAQKVRSGVRSVMIDGSHL--------------------PFAQNISLVKEVVDFCHRF-DVSVEAELG-RLGGQED 143 (284)
T ss_pred -HHHHHHHHHcCCCEEEeCCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCEEEEEEe-cccCccc
Confidence 1456778889999999887661 3677899999999988864 321 132 1221111
Q ss_pred c-CcCC---CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHHH
Q 017448 240 Y-MEAQ---DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGNK 312 (371)
Q Consensus 240 ~-~~~~---~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~~ 312 (371)
. .... ...+.+++.+|++ +.|||+|.++-|+....++. +.-+.+.++.|++.+++|++.=|+ +..++..+
T Consensus 144 ~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ 220 (284)
T PRK09195 144 DLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQ 220 (284)
T ss_pred CcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHH
Confidence 1 0000 0224566666655 66999999998886655522 233456788999999999765554 57788999
Q ss_pred HHHcCCccEEEechHhh
Q 017448 313 AVAENYTDLVAYGRSFL 329 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~l 329 (371)
+++.| +-=|=++..+.
T Consensus 221 ai~~G-i~KiNi~T~l~ 236 (284)
T PRK09195 221 TIKLG-ICKVNVATELK 236 (284)
T ss_pred HHHcC-CeEEEeCcHHH
Confidence 99999 55577777665
No 161
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.71 E-value=0.0039 Score=58.88 Aligned_cols=192 Identities=15% Similarity=0.085 Sum_probs=115.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCC------CCCCCCcc---cCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ------PNGEAPIS---CTSKGVTPGLGGGDWSPPRPLRTEEIPQI 159 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~------~~~~~~~~---ps~~~~~~~~~g~~~~~~~~mt~~eI~~i 159 (371)
.+..+.++++..+.++++++|+......-...+. ..-....+ |-.+.++ .. -+
T Consensus 28 ~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLD---------Hg--~~------- 89 (285)
T PRK07709 28 LEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLD---------HG--SS------- 89 (285)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECC---------CC--CC-------
Confidence 4677889999999999999999753221100000 00000000 1111111 11 11
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSP 236 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~ 236 (371)
.+.+++|.++||+-|-+.+.+- +++...+...++++-.+.. |-. -|| ++..
T Consensus 90 ----~e~i~~ai~~GftSVM~DgS~l--------------------p~eeNi~~Trevv~~Ah~~-gv~VEaElG-~igg 143 (285)
T PRK07709 90 ----FEKCKEAIDAGFTSVMIDASHH--------------------PFEENVETTKKVVEYAHAR-NVSVEAELG-TVGG 143 (285)
T ss_pred ----HHHHHHHHHcCCCEEEEeCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCEEEEEEe-ccCC
Confidence 2445577888999999887661 3677799999999988753 321 122 1222
Q ss_pred ccCc--CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 237 HANY--MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 237 ~~~~--~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
.++. .+.....+.+++.+|++ +.|||+|.++-|+....++. +.-+.+.++.|++.+++|++.=|+ +..++..
T Consensus 144 ~ed~~~~~~~~yT~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~ 220 (285)
T PRK07709 144 QEDDVIAEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIE 220 (285)
T ss_pred ccCCcccccccCCCHHHHHHHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHH
Confidence 1111 00000235666777765 45999999988887665532 233456788999999999776555 5678999
Q ss_pred HHHHcCCccEEEechHh
Q 017448 312 KAVAENYTDLVAYGRSF 328 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~ 328 (371)
++++.| +-=|=++..+
T Consensus 221 ~ai~~G-i~KiNi~T~l 236 (285)
T PRK07709 221 KAISLG-TSKINVNTEN 236 (285)
T ss_pred HHHHcC-CeEEEeChHH
Confidence 999999 4446666554
No 162
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.71 E-value=0.00028 Score=64.00 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+++...|...+..|+.++.+. .+ ....+...++.+++.+ +.|++.+||| ++++++++++.| +|.|.+|
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~S------G~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVG 204 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YS------GAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG-ADTIVVG 204 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CC------CCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 45667788888888887766664 21 1224567889999998 9999999999 999999999888 9999999
Q ss_pred hHhhhCCcHHHHHH
Q 017448 326 RSFLANPDLPKRFE 339 (371)
Q Consensus 326 R~~ladP~l~~k~~ 339 (371)
..+..||++..++.
T Consensus 205 sai~~~p~~~~~~v 218 (219)
T cd02812 205 NIVEEDPNAALETV 218 (219)
T ss_pred chhhCCHHHHHHHh
Confidence 99999999988764
No 163
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.71 E-value=0.0018 Score=64.20 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=56.2
Q ss_pred HHhhcCccEEEEcCCCcccCCC---CCCCCchhhHhHHHhc---------CCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 258 ALNKYQILYLHILEPRLFNAQD---KLDAPPYSLLPMRKAF---------DGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~---~~~~~~~~~~~ik~~~---------~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
+..+.|+|||.+. +-+....+ .++.-+..++.+++.+ ++||++.|||+.+++.++++.| +|.|++-
T Consensus 315 ~A~~~gaDYI~lG-PIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~~~Ni~~vl~aG-a~GVAVV 392 (437)
T PRK12290 315 RIVQIQPSYIALG-HIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGIDQSNAEQVWQCG-VSSLAVV 392 (437)
T ss_pred HHhhcCCCEEEEC-CccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcCHHHHHHHHHcC-CCEEEEe
Confidence 4456799999884 33322221 1222334455555544 6899999999999999999998 9999999
Q ss_pred hHhhhCCcHHHHH
Q 017448 326 RSFLANPDLPKRF 338 (371)
Q Consensus 326 R~~ladP~l~~k~ 338 (371)
|++...+|....+
T Consensus 393 SAI~~A~DP~aa~ 405 (437)
T PRK12290 393 RAITLAEDPQLVI 405 (437)
T ss_pred hHhhcCCCHHHHH
Confidence 9999887754443
No 164
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.71 E-value=0.00089 Score=60.53 Aligned_cols=131 Identities=15% Similarity=0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+..++.|.+.|+|.|++..-.|+|.+ ++.+...+-+.+|+++++..++.|=+-.
T Consensus 73 ~~E~~~Av~~GAdEiDvv~n~g~l~~-------------------g~~~~v~~ei~~i~~~~~g~~lKvIlE~------- 126 (211)
T TIGR00126 73 LYETKEAIKYGADEVDMVINIGALKD-------------------GNEEVVYDDIRAVVEACAGVLLKVIIET------- 126 (211)
T ss_pred HHHHHHHHHcCCCEEEeecchHhhhC-------------------CcHHHHHHHHHHHHHHcCCCeEEEEEec-------
Confidence 34456788999999998776544322 2345567778888888862255442221
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
...+.++....++...++|+|||-.+.|.. +........+.+++.+. ++|-+.||+ |.+++.++++.| +|
T Consensus 127 -~~L~~~ei~~a~~ia~eaGADfvKTsTGf~-----~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG-a~ 199 (211)
T TIGR00126 127 -GLLTDEEIRKACEICIDAGADFVKTSTGFG-----AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG-AS 199 (211)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEeCCCCC-----CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh-hH
Confidence 112334566788888999999998765532 12233445566666664 679999999 899999999998 89
Q ss_pred EEEechH
Q 017448 321 LVAYGRS 327 (371)
Q Consensus 321 ~V~~gR~ 327 (371)
.++...+
T Consensus 200 riGts~~ 206 (211)
T TIGR00126 200 RIGASAG 206 (211)
T ss_pred HhCcchH
Confidence 8887654
No 165
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.71 E-value=0.00021 Score=66.78 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+.+.|++.|++..-..... ....+...++.+.+.+.+||++.||+ +.+++++++..| +|.|.++..++.
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G-~~~vvigs~~~~ 108 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKR--GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLG-VEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcC--CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC-CCEEEEChHHhc
Confidence 35689999999999999876432211 22356678888888889999999999 899999999887 999999999999
Q ss_pred CCcHHHHHHhC
Q 017448 331 NPDLPKRFELN 341 (371)
Q Consensus 331 dP~l~~k~~~g 341 (371)
+|++++++.+.
T Consensus 109 ~~~~~~~~~~~ 119 (258)
T PRK01033 109 DPDLITEAAER 119 (258)
T ss_pred CHHHHHHHHHH
Confidence 99999888663
No 166
>PLN02979 glycolate oxidase
Probab=97.70 E-value=0.00069 Score=65.70 Aligned_cols=98 Identities=14% Similarity=-0.017 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA 294 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~ 294 (371)
-+-|+.+|+..+ -||.||--. .. +-++.+.+.|+|.|.|+...-.+.. ....-...+.++++.
T Consensus 212 W~dl~wlr~~~~-~PvivKgV~-----------~~----~dA~~a~~~Gvd~I~VsnhGGrqld-~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 212 WKDVQWLQTITK-LPILVKGVL-----------TG----EDARIAIQAGAAGIIVSNHGARQLD-YVPATISALEEVVKA 274 (366)
T ss_pred HHHHHHHHhccC-CCEEeecCC-----------CH----HHHHHHHhcCCCEEEECCCCcCCCC-CchhHHHHHHHHHHH
Confidence 366888888774 367766432 12 3456788899999999764211111 111123445567776
Q ss_pred cC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 295 FD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 295 ~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
++ +||++.||| +..|..++|.-| +|+|++||+++.
T Consensus 275 ~~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~ 312 (366)
T PLN02979 275 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 312 (366)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 54 889999999 899999999999 999999999984
No 167
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=97.70 E-value=0.001 Score=63.61 Aligned_cols=129 Identities=17% Similarity=0.126 Sum_probs=84.6
Q ss_pred HHHHHHc--CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 167 GRNAIKA--GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 167 A~~a~~a--G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
++...++ |.|.|-|..+||+ .+..++.|+.||+.++. +..|+=|.
T Consensus 112 ~~~L~~a~~~~d~iviD~AhGh------------------------s~~~i~~ik~ir~~~p~-~~viaGNV-------- 158 (343)
T TIGR01305 112 MTSILEAVPQLKFICLDVANGY------------------------SEHFVEFVKLVREAFPE-HTIMAGNV-------- 158 (343)
T ss_pred HHHHHhcCCCCCEEEEECCCCc------------------------HHHHHHHHHHHHhhCCC-CeEEEecc--------
Confidence 3334445 6999999999974 35678999999999864 33333332
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCC-C-CCCCCchhhHhHHHhc---CCCeEeeCCC-CHHHHHHHHH
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQ-D-KLDAPPYSLLPMRKAF---DGTFIASGGY-NRDDGNKAVA 315 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~-~-~~~~~~~~~~~ik~~~---~~pVi~~Ggi-t~~~a~~~l~ 315 (371)
.+. +-++.|.++|+|.+-|+-+. +.... . .+.+....+..+.++. ++|||+-||+ +.-|..++|+
T Consensus 159 --~T~----e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA 232 (343)
T TIGR01305 159 --VTG----EMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG 232 (343)
T ss_pred --cCH----HHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH
Confidence 123 34567778999999876331 11111 0 1223444444555543 5789999999 8899999999
Q ss_pred cCCccEEEechHhhhCCcHH
Q 017448 316 ENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 316 ~g~~D~V~~gR~~ladP~l~ 335 (371)
-| +|+||+|.-|..-.+-|
T Consensus 233 ~G-Ad~VMlG~llAG~~Esp 251 (343)
T TIGR01305 233 AG-ADFVMLGGMFAGHTESG 251 (343)
T ss_pred cC-CCEEEECHhhhCcCcCc
Confidence 99 99999995544444333
No 168
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.69 E-value=0.001 Score=59.89 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+..++.|.+.|+|.|++..--|++.+ +..+...+-+.+|++.+...++.+-+-.
T Consensus 72 ~~eve~A~~~GAdevdvv~~~g~~~~-------------------~~~~~~~~ei~~v~~~~~g~~lkvI~e~------- 125 (203)
T cd00959 72 VAEAREAIADGADEIDMVINIGALKS-------------------GDYEAVYEEIAAVVEACGGAPLKVILET------- 125 (203)
T ss_pred HHHHHHHHHcCCCEEEEeecHHHHhC-------------------CCHHHHHHHHHHHHHhcCCCeEEEEEec-------
Confidence 44467788899999999876554332 1234456678888888862244442221
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
...+.++....++...++|+|||-.+.+.. +........+.+++.+ ++||.+.||+ |.+++.++++.| +|
T Consensus 126 -~~l~~~~i~~a~ria~e~GaD~IKTsTG~~-----~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g-~~ 198 (203)
T cd00959 126 -GLLTDEEIIKACEIAIEAGADFIKTSTGFG-----PGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAG-AT 198 (203)
T ss_pred -CCCCHHHHHHHHHHHHHhCCCEEEcCCCCC-----CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhC-hh
Confidence 112345667788888999999998764432 1223334455555655 4789999999 899999999998 88
Q ss_pred EEEe
Q 017448 321 LVAY 324 (371)
Q Consensus 321 ~V~~ 324 (371)
.++.
T Consensus 199 riG~ 202 (203)
T cd00959 199 RIGT 202 (203)
T ss_pred hccC
Confidence 7764
No 169
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.69 E-value=0.00022 Score=66.22 Aligned_cols=83 Identities=12% Similarity=0.107 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhC
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
-.++|+.+++.|+.++||..-.- ....+...++.|++ +++||-.+||++.++++++|+.| +|-|.+|..++.|
T Consensus 45 P~~~A~~~~~~Ga~~lHvVDLdg-----g~~~n~~~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G-a~rViigT~Av~~ 117 (262)
T PLN02446 45 AAEFAEMYKRDGLTGGHVIMLGA-----DDASLAAALEALRA-YPGGLQVGGGVNSENAMSYLDAG-ASHVIVTSYVFRD 117 (262)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC-----CCcccHHHHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-CCEEEEchHHHhC
Confidence 34689999999999999976422 12334567778888 88999999999669999999999 9999999999999
Q ss_pred ----CcHHHHHHhC
Q 017448 332 ----PDLPKRFELN 341 (371)
Q Consensus 332 ----P~l~~k~~~g 341 (371)
|+|++++.+.
T Consensus 118 ~~~~p~~v~~~~~~ 131 (262)
T PLN02446 118 GQIDLERLKDLVRL 131 (262)
T ss_pred CCCCHHHHHHHHHH
Confidence 9999998774
No 170
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.68 E-value=0.00017 Score=64.69 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=68.2
Q ss_pred HHHHHHHhhcCccE---EEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHh
Q 017448 253 LYMAKALNKYQILY---LHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 253 ~~la~~l~~~Gvd~---l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.++|+...+.|+|= ++|+... . ......+.++.+.+.+.+|+-+.||| +.+++.++|..| +|=|++-.++
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~---~--gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaA 106 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASS---E--GRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAA 106 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccccc---c--cchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhH
Confidence 35889999999884 4544321 1 12335567888888899999999999 999999999999 9999999999
Q ss_pred hhCCcHHHHHHhCC
Q 017448 329 LANPDLPKRFELNA 342 (371)
Q Consensus 329 ladP~l~~k~~~g~ 342 (371)
+.||+|++++.+--
T Consensus 107 v~~p~lI~~~a~~F 120 (256)
T COG0107 107 VKDPELITEAADRF 120 (256)
T ss_pred hcChHHHHHHHHHh
Confidence 99999999988753
No 171
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.68 E-value=0.00084 Score=65.86 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc
Q 017448 216 EIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF 295 (371)
Q Consensus 216 eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~ 295 (371)
+=|+.+|+.++- ||.+|=-. +. +-++.+.+.|+|.|.|+...-.+.. ....-...+.+|++.+
T Consensus 235 ~di~~lr~~~~~-pvivKgV~-----------s~----~dA~~a~~~Gvd~I~Vs~hGGr~~d-~~~~t~~~L~~i~~a~ 297 (381)
T PRK11197 235 KDLEWIRDFWDG-PMVIKGIL-----------DP----EDARDAVRFGADGIVVSNHGGRQLD-GVLSSARALPAIADAV 297 (381)
T ss_pred HHHHHHHHhCCC-CEEEEecC-----------CH----HHHHHHHhCCCCEEEECCCCCCCCC-CcccHHHHHHHHHHHh
Confidence 337778887742 55554322 12 3456677899999998753211111 1111224455666665
Q ss_pred --CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 296 --DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 296 --~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
++||++.||| +..+..++|.-| +|+|++||+++.
T Consensus 298 ~~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~ 334 (381)
T PRK11197 298 KGDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY 334 (381)
T ss_pred cCCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence 5899999999 899999999999 999999999985
No 172
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.68 E-value=0.004 Score=58.99 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=114.7
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCC---------CCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ---------PNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQI 159 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~---------~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~i 159 (371)
.+..+.++++..+.++++++|+......-..... ......-.|-.+.++ ... +
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLD---------Hg~--~------- 89 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLD---------HGA--S------- 89 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECC---------CCC--C-------
Confidence 4677889999999999999999764321100000 000000011111111 111 1
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSP 236 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~ 236 (371)
.+..++|.++||+-|-|.+.+ =+++...+...++++-.+.. |-. -||. +..
T Consensus 90 ----~e~i~~ai~~GftSVMiDgS~--------------------lp~eeNi~~T~~vv~~Ah~~-gv~VEaElG~-vgg 143 (288)
T TIGR00167 90 ----EEDCAQAVKAGFSSVMIDGSH--------------------EPFEENIELTKKVVERAHKM-GVSVEAELGT-LGG 143 (288)
T ss_pred ----HHHHHHHHHcCCCEEEecCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEEee-ccC
Confidence 245677788899999988766 14677789999999887654 321 1221 111
Q ss_pred ccCc---C-cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CC-CCchhhHhHHHhcCCCeEeeCC--CCHH
Q 017448 237 HANY---M-EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LD-APPYSLLPMRKAFDGTFIASGG--YNRD 308 (371)
Q Consensus 237 ~~~~---~-~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~-~~~~~~~~ik~~~~~pVi~~Gg--it~~ 308 (371)
.++. . +.....+.+++.+|+ ++.|||.|.++-|+....++. +. -+.+.+++|++.+++|++.=|+ +..+
T Consensus 144 ~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e 220 (288)
T TIGR00167 144 EEDGVSVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDE 220 (288)
T ss_pred ccCCcccccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 1111 0 000012345555554 456999999998886665532 22 3566789999999999776555 5678
Q ss_pred HHHHHHHcCCccEEEechHh
Q 017448 309 DGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 309 ~a~~~l~~g~~D~V~~gR~~ 328 (371)
+..++++.| +-=|=++..+
T Consensus 221 ~~~~ai~~G-i~KiNi~T~l 239 (288)
T TIGR00167 221 EIKKAISLG-VVKVNIDTEL 239 (288)
T ss_pred HHHHHHHcC-CeEEEcChHH
Confidence 999999999 4456666654
No 173
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=97.67 E-value=0.00025 Score=69.25 Aligned_cols=100 Identities=21% Similarity=0.094 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 213 FALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 213 ~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
+.-+-|+.+|+.++ -||.||=-. .. +-++.+.+.||++|.|+.-.-.+.. ...+-...+.+++
T Consensus 212 ~~w~~i~~~~~~~~-~pvivKgv~-----------~~----~da~~~~~~G~~~i~vs~hGGr~~d-~~~~~~~~L~~i~ 274 (356)
T PF01070_consen 212 LTWDDIEWIRKQWK-LPVIVKGVL-----------SP----EDAKRAVDAGVDGIDVSNHGGRQLD-WGPPTIDALPEIR 274 (356)
T ss_dssp -SHHHHHHHHHHCS-SEEEEEEE------------SH----HHHHHHHHTT-SEEEEESGTGTSST-TS-BHHHHHHHHH
T ss_pred CCHHHHHHHhcccC-CceEEEecc-----------cH----HHHHHHHhcCCCEEEecCCCcccCc-cccccccccHHHH
Confidence 55577999999884 366666432 12 2356778899999999752111111 1122234566788
Q ss_pred HhcC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 293 KAFD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 293 ~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
+.++ +||++.||+ +..|+.++|.-| +|+|++||+++.
T Consensus 275 ~~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~ 314 (356)
T PF01070_consen 275 AAVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY 314 (356)
T ss_dssp HHHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred hhhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence 8774 889999999 899999999999 999999999875
No 174
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.66 E-value=0.00038 Score=67.77 Aligned_cols=99 Identities=16% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 213 FALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 213 ~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
+..+.|+.||+.++. +|.+| .. .+. +-++.+.+.|+|.|.|+.....+.. ........+.+++
T Consensus 223 ~~w~~i~~ir~~~~~-pviiK-gV----------~~~----eda~~a~~~G~d~I~VSnhGGrqld-~~~~~~~~L~ei~ 285 (361)
T cd04736 223 FNWQDLRWLRDLWPH-KLLVK-GI----------VTA----EDAKRCIELGADGVILSNHGGRQLD-DAIAPIEALAEIV 285 (361)
T ss_pred CCHHHHHHHHHhCCC-CEEEe-cC----------CCH----HHHHHHHHCCcCEEEECCCCcCCCc-CCccHHHHHHHHH
Confidence 456789999999853 66665 22 122 2456677899999998764322211 1122345667788
Q ss_pred HhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 293 KAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 293 ~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+.+++|||+-||+ +..++.++|.-| +|+|++||+++
T Consensus 286 ~~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l 322 (361)
T cd04736 286 AATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL 322 (361)
T ss_pred HHhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence 8889999999999 899999999999 99999999998
No 175
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.65 E-value=0.0018 Score=60.50 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhh----------hhHHHHHHHHHHHHHhCCccc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLEN----------RCRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~en----------R~r~~~eiv~avR~~vg~~~i 230 (371)
+.+.+.++...+.|+|.|||-. |.++---| |--+++ ..+-.+++++++|+.-.+.|+
T Consensus 26 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~ 92 (258)
T PRK13111 26 ETSLEIIKALVEAGADIIELGI-----------PFSDPVAD--GPVIQAASLRALAAGVTLADVFELVREIREKDPTIPI 92 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4577888888899999999854 55555555 433322 133468888888854322254
Q ss_pred EEEE--cCccC-----cC----cCC------CCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------------
Q 017448 231 GIRL--SPHAN-----YM----EAQ------DSNPEALGLYMAKALNKYQILYLHILEPRLFN----------------- 276 (371)
Q Consensus 231 ~vrl--~~~~~-----~~----~~~------~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------------- 276 (371)
.+-. |+.-. +. +.+ .+.+.++...+.+.+.+.|++.|-+..++...
T Consensus 93 vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 93 VLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred EEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 3222 21100 00 001 14577778888888888898888755443210
Q ss_pred --CCCCC------CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 --AQDKL------DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 --~~~~~------~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..-.+ ......++.+|+..++||++++|+ +++++.++++ . +|+|.+|.+++.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv~ 233 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALVK 233 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHHH
Confidence 00000 112236778999899999999999 8999999885 4 999999999873
No 176
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.65 E-value=0.0023 Score=65.63 Aligned_cols=81 Identities=14% Similarity=0.034 Sum_probs=58.4
Q ss_pred HHHhhcCccEEEEcCCCcccCCC--CCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCcc---EEEechHhhhC
Q 017448 257 KALNKYQILYLHILEPRLFNAQD--KLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTD---LVAYGRSFLAN 331 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~~~~~~~--~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D---~V~~gR~~lad 331 (371)
....+.|+||+-++ +-+....+ .++..+..++.+.+..++||++.||++++++.++++.| +| +|+++++++..
T Consensus 404 ~~a~~~gadyi~~g-pif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~gvav~~~i~~~ 481 (502)
T PLN02898 404 EQAWKDGADYIGCG-GVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGISASNAASVMESG-APNLKGVAVVSALFDQ 481 (502)
T ss_pred HHHhhcCCCEEEEC-CeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCceEEEEeHHhcC
Confidence 34456799999874 33322221 12223456777777788999999999999999999988 77 99999999977
Q ss_pred CcHHHHHH
Q 017448 332 PDLPKRFE 339 (371)
Q Consensus 332 P~l~~k~~ 339 (371)
++..+.++
T Consensus 482 ~d~~~~~~ 489 (502)
T PLN02898 482 EDVLKATR 489 (502)
T ss_pred CCHHHHHH
Confidence 77554443
No 177
>PLN02591 tryptophan synthase
Probab=97.64 E-value=0.0019 Score=59.95 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCccc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENR----------CRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR----------~r~~~eiv~avR~~vg~~~i 230 (371)
+.+.+.++...++|+|.|||-. |.++--.| |--+++- .+-.+++++.+|+... .|+
T Consensus 16 e~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~-~p~ 81 (250)
T PLN02591 16 DTTAEALRLLDACGADVIELGV-----------PYSDPLAD--GPVIQAAATRALEKGTTLDSVISMLKEVAPQLS-CPI 81 (250)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCccc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 4567778888899999999854 55555555 4333222 2346788888886532 243
Q ss_pred EEEE--cCc-----cCcC----cCC------CCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------------
Q 017448 231 GIRL--SPH-----ANYM----EAQ------DSNPEALGLYMAKALNKYQILYLHILEPRLFN----------------- 276 (371)
Q Consensus 231 ~vrl--~~~-----~~~~----~~~------~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------------- 276 (371)
.+-. |+. +.+. +.+ -+.+.++..++...+.+.|++.|.+..++...
T Consensus 82 ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 82 VLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred EEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 2211 110 0000 011 24577888889999999999998876544221
Q ss_pred --CCCCC------CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 --AQDKL------DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 --~~~~~------~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..-.. ......++.+|+..++||+++-|+ +++++.++++.| +|.|.+|-+++.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk 223 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK 223 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence 00000 111234678999889999998889 799999999888 999999999864
No 178
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.64 E-value=0.0019 Score=60.44 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCccc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENR----------CRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR----------~r~~~eiv~avR~~vg~~~i 230 (371)
+.+.+.++...++|+|.|||-. |.++--.| |--+++- .+-.+++++++|+... .|+
T Consensus 29 ~~~~~~~~~l~~~Gad~iElGi-----------PfSDP~aD--GpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~-~p~ 94 (263)
T CHL00200 29 VITKKALKILDKKGADIIELGI-----------PYSDPLAD--GPIIQEASNRALKQGINLNKILSILSEVNGEIK-API 94 (263)
T ss_pred HHHHHHHHHHHHCCCCEEEECC-----------CCCCCCcc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC-CCE
Confidence 4567888888899999999854 55555555 4332221 2346888899986532 243
Q ss_pred EEE--EcCc-----cCc---------CcC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------------
Q 017448 231 GIR--LSPH-----ANY---------MEA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFN----------------- 276 (371)
Q Consensus 231 ~vr--l~~~-----~~~---------~~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------------- 276 (371)
.+- .|+. +.+ .+. ..+.+.++..++.+.+.+.|++.+-+..++...
T Consensus 95 vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 95 VIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred EEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 221 1110 000 000 124567777788888888888888776544210
Q ss_pred --CCCCCC------CCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 277 --AQDKLD------APPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 277 --~~~~~~------~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+...+. .....++.+|+.++.||.+..|+ +++++.++.+.| +|+|.+|-+++
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv 235 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV 235 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence 000110 01234677889899999999999 799999999888 99999999995
No 179
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.0019 Score=57.85 Aligned_cols=131 Identities=23% Similarity=0.173 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEA 243 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~ 243 (371)
--++.|.++|+|.+-|-++- + ...|.++++.+-.-. .+.+.|-.
T Consensus 71 ~e~~ma~~aGAd~~tV~g~A---------~-------------------~~TI~~~i~~A~~~~~~v~iDl~~------- 115 (217)
T COG0269 71 IEARMAFEAGADWVTVLGAA---------D-------------------DATIKKAIKVAKEYGKEVQIDLIG------- 115 (217)
T ss_pred HHHHHHHHcCCCEEEEEecC---------C-------------------HHHHHHHHHHHHHcCCeEEEEeec-------
Confidence 45688899999999987654 1 123333333332111 23443322
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCCCHHHHHHHHHcCCccE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGYNRDDGNKAVAENYTDL 321 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggit~~~a~~~l~~g~~D~ 321 (371)
..+.+ ..++.|++.|+|++.+|.+.-.+.. +..+-+..+..+|+..+ ..|-+.||+++++...++..| +|.
T Consensus 116 --~~~~~---~~~~~l~~~gvd~~~~H~g~D~q~~-G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~-~~i 188 (217)
T COG0269 116 --VWDPE---QRAKWLKELGVDQVILHRGRDAQAA-GKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIG-ADI 188 (217)
T ss_pred --CCCHH---HHHHHHHHhCCCEEEEEecccHhhc-CCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCC-CCE
Confidence 22232 3667778899999999887644332 22332466788999887 579999999999999999998 999
Q ss_pred EEechHhhhCCcHHHH
Q 017448 322 VAYGRSFLANPDLPKR 337 (371)
Q Consensus 322 V~~gR~~ladP~l~~k 337 (371)
|.+||+.....+-.+.
T Consensus 189 vIvGraIt~a~dp~~~ 204 (217)
T COG0269 189 VIVGRAITGAKDPAEA 204 (217)
T ss_pred EEECchhcCCCCHHHH
Confidence 9999999988875443
No 180
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.62 E-value=0.00073 Score=60.73 Aligned_cols=121 Identities=18% Similarity=0.106 Sum_probs=76.5
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~ 246 (371)
..+.+.|.|+|+||+.. ..+.++.+|+..|.. ...+.++..
T Consensus 67 ~ia~~~~~d~Vqlhg~e-----------------------------~~~~~~~l~~~~~~~~i~~i~~~~~--------- 108 (203)
T cd00405 67 EIAEELGLDVVQLHGDE-----------------------------SPEYCAQLRARLGLPVIKAIRVKDE--------- 108 (203)
T ss_pred HHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCCcEEEEEecCCh---------
Confidence 45667899999998643 034567778777644 223444431
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
.+ .... .....++||+-+...+-.... ......+..++.++ .++|+++.||+|+++..++++.+.+|+|.+.
T Consensus 109 --~~--~~~~-~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~ 181 (203)
T cd00405 109 --ED--LEKA-AAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGLTPDNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred --hh--HHHh-hhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCCChHHHHHHHHhcCCCEEEcC
Confidence 11 1122 223458999865332211100 01223444555554 5789999999999999999999889999999
Q ss_pred hHhhhCCc
Q 017448 326 RSFLANPD 333 (371)
Q Consensus 326 R~~ladP~ 333 (371)
+++...|-
T Consensus 182 S~ie~~pg 189 (203)
T cd00405 182 SGVETSPG 189 (203)
T ss_pred CcccCCCC
Confidence 99987764
No 181
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.62 E-value=0.00025 Score=64.99 Aligned_cols=83 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+. ++.+++....-... ....+...++.+.+.+++||++.||+ +.++++++++.| +|.|.+|+.++ |
T Consensus 33 ~~~a~~~~~~-~~~l~ivDldga~~--g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~ 107 (228)
T PRK04128 33 VEIALRFSEY-VDKIHVVDLDGAFE--GKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-D 107 (228)
T ss_pred HHHHHHHHHh-CCEEEEEECcchhc--CCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-C
Confidence 4577778777 88888854321111 22346678888888899999999999 899999999998 99999999999 9
Q ss_pred CcHHHHHHh
Q 017448 332 PDLPKRFEL 340 (371)
Q Consensus 332 P~l~~k~~~ 340 (371)
|++.+++.+
T Consensus 108 ~~~l~~~~~ 116 (228)
T PRK04128 108 LEFLEKVTS 116 (228)
T ss_pred HHHHHHHHH
Confidence 999999865
No 182
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.62 E-value=0.0015 Score=60.09 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
.+.++++.++|+|-|-|...- .+. .++++.+.++.|.. .+++.........
T Consensus 88 ~e~v~~~l~~Ga~kvvigt~a-----------------------~~~----~~~l~~~~~~fg~~ivvslD~~~g~v~~- 139 (234)
T PRK13587 88 KSQIMDYFAAGINYCIVGTKG-----------------------IQD----TDWLKEMAHTFPGRIYLSVDAYGEDIKV- 139 (234)
T ss_pred HHHHHHHHHCCCCEEEECchH-----------------------hcC----HHHHHHHHHHcCCCEEEEEEeeCCEEEe-
Confidence 466777788999998764332 111 34566666667755 3555443211001
Q ss_pred CCC-CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 243 AQD-SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 243 ~~~-~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
.+| ..+.-+..++++.+++.|+..+-+..-..... ...++...++.+.+.+++||++.||+ ++++..++++.| +|
T Consensus 140 ~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt--~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G-~~ 216 (234)
T PRK13587 140 NGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGK--MSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLN-VH 216 (234)
T ss_pred cCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCC--CCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CC
Confidence 011 11111235688899999987654433221111 12456778888988899999999999 899999999887 99
Q ss_pred EEEechHhhh
Q 017448 321 LVAYGRSFLA 330 (371)
Q Consensus 321 ~V~~gR~~la 330 (371)
.|.+|+++..
T Consensus 217 ~vivG~a~~~ 226 (234)
T PRK13587 217 AAIIGKAAHQ 226 (234)
T ss_pred EEEEhHHHHh
Confidence 9999999876
No 183
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=97.61 E-value=0.00054 Score=62.76 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH
Q 017448 215 LEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK 293 (371)
Q Consensus 215 ~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~ 293 (371)
.+.|++||+++|++ .+.+..|. ..+.+++..+++.|++.++.||+ +|- +..+....+.+++
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~---------~~~~~~a~~~~~~l~~~~i~~iE--eP~-------~~~d~~~~~~L~~ 142 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANG---------AWTPKEAIRLIRALEKYGLAWIE--EPC-------APDDLEGYAALRR 142 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCC---------CCCHHHHHHHHHHhhhcCCCeEE--CCC-------CccCHHHHHHHHh
Confidence 89999999999975 45555543 23567899999999999999998 542 2234566778999
Q ss_pred hcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 294 AFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 294 ~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
..++||.+...+ +..+..++++.+.+|++.+
T Consensus 143 ~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 143 RTGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 999999886666 7899989999999999875
No 184
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.00028 Score=65.25 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=68.2
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+.|++++|+..-..... ....+...++.|.+.+ .||...||+ +.++++++++.| +|-|.+|..++.|
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a~~--g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G-a~rvvigT~a~~~ 108 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKAIE--NSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLED 108 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCccc--CCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-CCEEEECchhhCC
Confidence 4588889999999999976432111 2334566778888777 799999999 899999999998 9999999999999
Q ss_pred CcHHHHHHh
Q 017448 332 PDLPKRFEL 340 (371)
Q Consensus 332 P~l~~k~~~ 340 (371)
|++++++.+
T Consensus 109 p~~l~~~~~ 117 (241)
T PRK14114 109 PSFLKFLKE 117 (241)
T ss_pred HHHHHHHHH
Confidence 999999843
No 185
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.60 E-value=0.0077 Score=56.90 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=114.9
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCC--CCC----CCCc---ccCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ--PNG----EAPI---SCTSKGVTPGLGGGDWSPPRPLRTEEIPQI 159 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~--~~~----~~~~---~ps~~~~~~~~~g~~~~~~~~mt~~eI~~i 159 (371)
.+..+.++++..+.++++++|+......-...+. ... .... -|-.+.++ .. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLD---------Hg--~~------- 89 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLD---------HG--SS------- 89 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECC---------CC--CC-------
Confidence 4577889999999999999999764321000000 000 0000 01112111 11 12
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSP 236 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~ 236 (371)
.+.+++|.++||+-|-|.+.+- ++|...+...++++-.+. .|-. -|| ++..
T Consensus 90 ----~e~i~~ai~~GftSVM~DgS~l--------------------~~eeNi~~T~~vve~Ah~-~gv~VEaElG-~vgg 143 (286)
T PRK08610 90 ----FEKCKEAIDAGFTSVMIDASHS--------------------PFEENVATTKKVVEYAHE-KGVSVEAELG-TVGG 143 (286)
T ss_pred ----HHHHHHHHHcCCCEEEEeCCCC--------------------CHHHHHHHHHHHHHHHHH-cCCEEEEEEe-ccCC
Confidence 2334668889999999987661 367789999999998874 3321 122 1222
Q ss_pred ccCcC--cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 237 HANYM--EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 237 ~~~~~--~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
.++.. +.....+.+++.+|++ +.|||+|.++-|+....++. +.-+.+.+++|++.+++|++.=|+ +..++..
T Consensus 144 ~ed~~~~~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~ 220 (286)
T PRK08610 144 QEDDVVADGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQ 220 (286)
T ss_pred ccCCCCCcccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHH
Confidence 11110 0001235566667754 67999999998887665532 233456788999999999776555 5678899
Q ss_pred HHHHcCCccEEEechHh
Q 017448 312 KAVAENYTDLVAYGRSF 328 (371)
Q Consensus 312 ~~l~~g~~D~V~~gR~~ 328 (371)
++++.|. -=|=++..+
T Consensus 221 ~ai~~GI-~KiNi~T~l 236 (286)
T PRK08610 221 KAIPFGT-AKINVNTEN 236 (286)
T ss_pred HHHHCCC-eEEEeccHH
Confidence 9999994 445555443
No 186
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.60 E-value=0.0079 Score=56.75 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=117.0
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccC-C-CCC---CC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTY-G-FQP---NG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~-~-~~~---~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+......-.. . +.. .- ...--|-.+.++ ... +
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD---------Hg~--~---------- 84 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLD---------HHE--S---------- 84 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC---------CCC--C----------
Confidence 4677889999999999999999764321000 0 000 00 000011111111 111 1
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~ 239 (371)
-+..++|.++||+-|-+.+.+- +++...+...++++..+.. |-. -|| .+...++
T Consensus 85 -~e~i~~ai~~GFtSVM~DgS~l--------------------p~eeNi~~T~~vv~~Ah~~-gv~VEaElG-~vgg~e~ 141 (282)
T TIGR01858 85 -LDDIRQKVHAGVRSAMIDGSHF--------------------PFAQNVKLVKEVVDFCHRQ-DCSVEAELG-RLGGVED 141 (282)
T ss_pred -HHHHHHHHHcCCCEEeecCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCeEEEEEE-ecCCccC
Confidence 1446888999999999987661 2677799999999988763 321 122 1211111
Q ss_pred c-C--cC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHHH
Q 017448 240 Y-M--EA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGNK 312 (371)
Q Consensus 240 ~-~--~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~~ 312 (371)
. . +. ....+.+++.+|+ ++.|||+|.++-|+....++. +.-+.+.++.|++.+++|++.=|+ +..++..+
T Consensus 142 ~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ 218 (282)
T TIGR01858 142 DLSVDEEDALYTDPQEAKEFV---EATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRR 218 (282)
T ss_pred CCccccchhccCCHHHHHHHH---HHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHH
Confidence 1 0 00 0012446666664 467999999998886655532 233456789999999999765554 57788999
Q ss_pred HHHcCCccEEEechHhh
Q 017448 313 AVAENYTDLVAYGRSFL 329 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~l 329 (371)
+++.| +-=|=++..+.
T Consensus 219 ai~~G-i~KiNi~T~l~ 234 (282)
T TIGR01858 219 TIELG-ICKVNVATELK 234 (282)
T ss_pred HHHcC-CeEEEeCcHHH
Confidence 99999 55566766554
No 187
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.60 E-value=0.00054 Score=62.96 Aligned_cols=85 Identities=9% Similarity=0.121 Sum_probs=67.6
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+.|++++|+..-.... ....+...++.+.+....|+...||+ +.++++++++.| +|-|.+|..++.|
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a~---~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G-a~kvvigt~a~~~ 108 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAAE---GVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLD-VNALVFSTIVFTN 108 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCcC---CCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-CCEEEECchhhCC
Confidence 458888999999999997643221 22335566777777433599999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 017448 332 PDLPKRFELN 341 (371)
Q Consensus 332 P~l~~k~~~g 341 (371)
|++++++.+.
T Consensus 109 p~~~~~~~~~ 118 (232)
T PRK13586 109 FNLFHDIVRE 118 (232)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 188
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.60 E-value=0.002 Score=69.18 Aligned_cols=104 Identities=10% Similarity=-0.043 Sum_probs=68.9
Q ss_pred HHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHH---HHhhcCccEEEEcCCCcccCCCCC---CCCchhhHh
Q 017448 218 VEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAK---ALNKYQILYLHILEPRLFNAQDKL---DAPPYSLLP 290 (371)
Q Consensus 218 v~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~---~l~~~Gvd~l~v~~~~~~~~~~~~---~~~~~~~~~ 290 (371)
++.+|+.+|++ .||+ |.. +.++...... .+-++|+||+.++. -+....++. ..-+..+++
T Consensus 91 ~~~~r~~~~~~~~iG~--S~h----------~~~e~~~~~~~~~~~g~~gaDYi~~Gp-vf~T~tK~~~~~~lG~~~l~~ 157 (755)
T PRK09517 91 YTQARRLLPAHLELGL--TIE----------TLDQLEAVIAQCAETGVALPDVIGIGP-VASTATKPDAPPALGVDGIAE 157 (755)
T ss_pred HHHHHHhcCCCCEEEE--eCC----------CHHHHHHHHhhhccCCCCCCCEEEECC-ccccCCCCCCCCCCCHHHHHH
Confidence 45666777766 6776 442 2332222211 12234699998853 332222111 223456777
Q ss_pred HHHhcC---CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHH
Q 017448 291 MRKAFD---GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 291 ik~~~~---~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~ 335 (371)
+++.++ +||++-|||+++++.++++.| +|+|++.+++...+|..
T Consensus 158 ~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d~~ 204 (755)
T PRK09517 158 IAAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAANPA 204 (755)
T ss_pred HHHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCCHH
Confidence 888887 999999999999999999998 99999999999877743
No 189
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.59 E-value=8.5e-05 Score=68.20 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=68.4
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
++++.+++.|++.+|+..-..... ....+...++.+.+.+.+||...||+ +.++++++++.| +|-|.++..++.||
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa~~--g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G-a~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAAKE--GRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG-ADRVVIGTEALEDP 109 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHHCC--THHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT--SEEEESHHHHHCC
T ss_pred HHHHHHHHcCCCEEEEEEccCccc--CchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-CCEEEeChHHhhch
Confidence 488888999999999875321110 12335667888999999999999999 899999999999 99999999999999
Q ss_pred cHHHHHHhC
Q 017448 333 DLPKRFELN 341 (371)
Q Consensus 333 ~l~~k~~~g 341 (371)
++.+++.+.
T Consensus 110 ~~l~~~~~~ 118 (229)
T PF00977_consen 110 ELLEELAER 118 (229)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999998874
No 190
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.59 E-value=0.0011 Score=60.23 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=34.4
Q ss_pred eEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 299 FIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 299 Vi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
|.+.||++++++.++++.| +|.|.+|++++.+||....++
T Consensus 173 i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 173 IEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred EEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 5577999999999999887 999999999999999765544
No 191
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.58 E-value=0.00056 Score=60.41 Aligned_cols=81 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred HHHhhcCccEEEEcCCCcccCCCC---CCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 257 KALNKYQILYLHILEPRLFNAQDK---LDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~~~~~~~~---~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
..+.+.|+|++.++.- +....++ .......++.+++..++||++.||++.+++.++++.| +|+|++|++++.+++
T Consensus 109 ~~~~~~g~d~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~ 186 (196)
T cd00564 109 LRAEELGADYVGFGPV-FPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADD 186 (196)
T ss_pred HHHhhcCCCEEEECCc-cCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCC
Confidence 4456679999987532 1111101 1223456677777788999999999999999999998 999999999999888
Q ss_pred HHHHHH
Q 017448 334 LPKRFE 339 (371)
Q Consensus 334 l~~k~~ 339 (371)
....++
T Consensus 187 ~~~~~~ 192 (196)
T cd00564 187 PAAAAR 192 (196)
T ss_pred HHHHHH
Confidence 766654
No 192
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.0039 Score=58.58 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCccc-CCCCCCCCchhhhh---HHHHHHHHHHHH-
Q 017448 149 RPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVN-DRTDQYGGSLENRC---RFALEIVEAVVN- 223 (371)
Q Consensus 149 ~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N-~R~D~yGgs~enR~---r~~~eiv~avR~- 223 (371)
..||.+++...++. .+..-+ =.|-.+||..| |.+- .| ++..+. +++.+++.+--+
T Consensus 188 nk~s~d~~~dy~~g----V~~~g~-~adylviNvSs---------PNtpGlr------~lq~k~~L~~ll~~v~~a~~~~ 247 (398)
T KOG1436|consen 188 NKTSEDAILDYVEG----VRVFGP-FADYLVINVSS---------PNTPGLR------SLQKKSDLRKLLTKVVQARDKL 247 (398)
T ss_pred ccCCcchHHHHHHH----hhhccc-ccceEEEeccC---------CCCcchh------hhhhHHHHHHHHHHHHHHHhcc
Confidence 35777776654443 332211 13666777766 4332 12 233332 334444444322
Q ss_pred HhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-----C---------CCCCCchhh
Q 017448 224 EIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-----D---------KLDAPPYSL 288 (371)
Q Consensus 224 ~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-----~---------~~~~~~~~~ 288 (371)
..|.. |+.+|+.++ ...++..+++..+.+.++|-+-++..+...+. . .++...-..
T Consensus 248 ~~~~~~pvl~kiapD---------L~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st 318 (398)
T KOG1436|consen 248 PLGKKPPVLVKIAPD---------LSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPIST 318 (398)
T ss_pred ccCCCCceEEEeccc---------hhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHH
Confidence 12444 799999882 34555667877777788887766543322210 0 111122223
Q ss_pred ---HhHHHhc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC-CcHHHHHHhC
Q 017448 289 ---LPMRKAF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN-PDLPKRFELN 341 (371)
Q Consensus 289 ---~~ik~~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad-P~l~~k~~~g 341 (371)
+.+...+ ++|||++||+ +-+||-+-|..| +.+|-+..+|.-+ |-++.||+..
T Consensus 319 ~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~E 377 (398)
T KOG1436|consen 319 NTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKRE 377 (398)
T ss_pred HHHHHHHHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHHH
Confidence 3444444 4899999999 889999999999 9999999998754 7888888764
No 193
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.58 E-value=0.001 Score=67.83 Aligned_cols=130 Identities=16% Similarity=0.090 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++...++|.|.+-+...||. ..-.++.++.+|+..++-+|.+.-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~------------------------~~~vl~~i~~i~~~~p~~~vi~g~--------- 276 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH------------------------SEGVLDRVREIKAKYPDVQIIAGN--------- 276 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc------------------------chhHHHHHHHHHhhCCCCCEEEec---------
Confidence 57778888899999988877742 122678899999988543555411
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcc---cC-CC-CCCCCchhhHhHHHh---cCCCeEeeCCC-CHHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLF---NA-QD-KLDAPPYSLLPMRKA---FDGTFIASGGY-NRDDGNKAV 314 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~---~~-~~-~~~~~~~~~~~ik~~---~~~pVi~~Ggi-t~~~a~~~l 314 (371)
-.+.+ -++.|.++|+|+|.+..+..+ .. .. -..+....+..+++. .++|||+-||+ ++.++.++|
T Consensus 277 --v~t~e----~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAl 350 (486)
T PRK05567 277 --VATAE----AARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKAL 350 (486)
T ss_pred --cCCHH----HHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHH
Confidence 12333 455677899999987432211 00 00 112233445455554 46899999999 999999999
Q ss_pred HcCCccEEEechHhhhCCc
Q 017448 315 AENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~ 333 (371)
+-| +|.|++|..+..--+
T Consensus 351 a~G-A~~v~~G~~~a~~~e 368 (486)
T PRK05567 351 AAG-ASAVMLGSMLAGTEE 368 (486)
T ss_pred HhC-CCEEEECcccccccc
Confidence 999 999999988766443
No 194
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.57 E-value=0.003 Score=59.06 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=43.3
Q ss_pred chhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 285 PYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 285 ~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
......+.+.++ .++|+.||+ |++++.++++.| +|.|.+|++++..++..+.++
T Consensus 198 ~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G-ad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 198 LETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG-ADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence 344555666553 488998998 899999999998 999999999999988765554
No 195
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.53 E-value=0.0039 Score=55.48 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=49.9
Q ss_pred HhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 259 LNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 259 l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
..+.|+||+-+.. . +. ....+++.+++.+ ++|+++.||++++++.++++.| +|.|+++..+.
T Consensus 113 A~~~Gad~i~~~p------~-~~-~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~ 175 (190)
T cd00452 113 ALELGADIVKLFP------A-EA-VGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP 175 (190)
T ss_pred HHHCCCCEEEEcC------C-cc-cCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence 4468999998721 1 11 2345677888777 4899999999999999999999 99999999987
No 196
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.51 E-value=0.0018 Score=63.39 Aligned_cols=134 Identities=19% Similarity=0.083 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCC-CCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQY-GGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~y-Ggs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
.+.+-++.+.++|.|.|-||+- .|...| +|+- .+ .++.+.+ +..+ -||.+ ..
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgr--------------t~~q~~~sg~~--~p---~~l~~~i-~~~~-IPVI~--G~---- 195 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGT--------------LVSAEHVSTSG--EP---LNLKEFI-GELD-VPVIA--GG---- 195 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEecc--------------chhhhccCCCC--CH---HHHHHHH-HHCC-CCEEE--eC----
Confidence 3567778888999999999842 244444 2211 12 2323322 3343 24433 11
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC--CC-CCCCCchhhHhHH-------HhcC---CCeEeeCCC-C
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA--QD-KLDAPPYSLLPMR-------KAFD---GTFIASGGY-N 306 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~--~~-~~~~~~~~~~~ik-------~~~~---~pVi~~Ggi-t 306 (371)
-.+.+ .++.+.+.|+|.|.+..+..... .. ...+....+..+. +.+. +|||+.||| +
T Consensus 196 -----V~t~e----~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~t 266 (369)
T TIGR01304 196 -----VNDYT----TALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIET 266 (369)
T ss_pred -----CCCHH----HHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence 11233 34445568999988544322111 10 0111112222222 1232 899999999 9
Q ss_pred HHHHHHHHHcCCccEEEechHhhhCC
Q 017448 307 RDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 307 ~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..++.++|+-| +|.|++|++|+.--
T Consensus 267 g~di~kAlAlG-AdaV~iGt~~a~a~ 291 (369)
T TIGR01304 267 SGDLVKAIACG-ADAVVLGSPLARAA 291 (369)
T ss_pred HHHHHHHHHcC-CCEeeeHHHHHhhh
Confidence 99999999998 99999999998743
No 197
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.50 E-value=0.038 Score=51.28 Aligned_cols=172 Identities=16% Similarity=0.103 Sum_probs=112.9
Q ss_pred CChhhhhchHHHHHHHHHc-CCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 84 WTEEQVEAWKPIVDAVHEK-GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 84 ~~~~~~~~~~~l~~~ih~~-g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
...+.+..+..++..+++. +.++.+|+.- ..+
T Consensus 60 ~~~etvaaM~~i~~~v~~~~~~p~GVnvL~---------------------------------nd~-------------- 92 (254)
T PF03437_consen 60 VGPETVAAMARIAREVRREVSVPVGVNVLR---------------------------------NDP-------------- 92 (254)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEeeeec---------------------------------CCC--------------
Confidence 4678888999999888776 6678888742 112
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
..+...|..+|+|.|.++.-+|- .-+| .|.++.++ .|++ ..|+.++.+ .|...++..- ..
T Consensus 93 -~aalaiA~A~ga~FIRv~~~~g~-----------~~~d--~G~~~~~a---~e~~-r~R~~l~a~v~ilaDV~~kh-~~ 153 (254)
T PF03437_consen 93 -KAALAIAAATGADFIRVNVFVGA-----------YVTD--EGIIEGCA---GELL-RYRKRLGADVKILADVHVKH-SS 153 (254)
T ss_pred -HHHHHHHHHhCCCEEEecCEEce-----------eccc--CccccccH---HHHH-HHHHHcCCCeEEEeeechhh-cc
Confidence 35567788899999998766642 2233 35555544 3332 346666665 2333333211 11
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccE
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDL 321 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~ 321 (371)
.. ...+.++. ....++..+.|.|-++....+ .......++.+|+.++.||++++|.|++...+.|+. +|.
T Consensus 154 ~l-~~~~~~~~--~~~a~~~~~aDaviVtG~~TG-----~~~~~~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~~--ADG 223 (254)
T PF03437_consen 154 PL-ATRDLEEA--AKDAVERGGADAVIVTGKATG-----EPPDPEKLKRVREAVPVPVLVGSGVTPENIAEYLSY--ADG 223 (254)
T ss_pred cC-CCCCHHHH--HHHHHHhcCCCEEEECCcccC-----CCCCHHHHHHHHhcCCCCEEEecCCCHHHHHHHHHh--CCE
Confidence 11 12234432 223446778999999775432 234566788999999999999999999999999975 899
Q ss_pred EEechHhhhC
Q 017448 322 VAYGRSFLAN 331 (371)
Q Consensus 322 V~~gR~~lad 331 (371)
+.+|..|=.|
T Consensus 224 ~IVGS~~K~~ 233 (254)
T PF03437_consen 224 AIVGSYFKKD 233 (254)
T ss_pred EEEeeeeeeC
Confidence 9999877643
No 198
>PRK08999 hypothetical protein; Provisional
Probab=97.50 E-value=0.002 Score=61.83 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=51.7
Q ss_pred HHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 257 KALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
++..+.|+||+.++. -+.+..++ .+.-...++.+++.+++||++-|||+++++.++++.| +|+|++.+++
T Consensus 240 ~~a~~~~~dyi~~gp-vf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva~i~~~ 311 (312)
T PRK08999 240 ARAQRLGVDFAVLSP-VQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIAGIRGL 311 (312)
T ss_pred HHHHhcCCCEEEECC-CcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEEEEEEe
Confidence 345567999998853 33322211 1222345677888889999999999999999999998 9999988765
No 199
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.50 E-value=0.0097 Score=56.24 Aligned_cols=193 Identities=13% Similarity=0.044 Sum_probs=118.3
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccc-cCCCCCCC-----CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVS-TYGFQPNG-----EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~-~~~~~~~~-----~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+......- .......- ...-.|-.+.++ .. .+
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLD---------H~--~~---------- 86 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLD---------HH--ED---------- 86 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC---------CC--CC----------
Confidence 46788899999999999999998644210 00000000 000001111111 11 11
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~ 239 (371)
.+..++|.++||+-|-|.+.+- +++...+...++++-.+.. |-. -|| .+...++
T Consensus 87 -~e~i~~ai~~GftSVMiDgS~l--------------------p~eeNi~~T~~vv~~Ah~~-gvsVEaElG-~igg~e~ 143 (284)
T PRK12737 87 -LDDIKKKVRAGIRSVMIDGSHL--------------------SFEENIAIVKEVVEFCHRY-DASVEAELG-RLGGQED 143 (284)
T ss_pred -HHHHHHHHHcCCCeEEecCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCEEEEEEe-eccCccC
Confidence 2455888899999999887661 4677799999999998874 321 122 1222111
Q ss_pred c-C-c--CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHHH
Q 017448 240 Y-M-E--AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGNK 312 (371)
Q Consensus 240 ~-~-~--~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~~ 312 (371)
. . + .....+.+++.+|++ +.|||.|.++-|+....++. +.-+.+.++.|++.+++|++.=|+ +..++..+
T Consensus 144 ~~~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~k 220 (284)
T PRK12737 144 DLVVDEKDAMYTNPDAAAEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKK 220 (284)
T ss_pred CcccccccccCCCHHHHHHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 1 0 0 000224566777765 46999999998886665532 223445689999999999765555 57788999
Q ss_pred HHHcCCccEEEechHhh
Q 017448 313 AVAENYTDLVAYGRSFL 329 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~l 329 (371)
+++.| +-=|=++..+.
T Consensus 221 ai~~G-i~KiNi~T~l~ 236 (284)
T PRK12737 221 AISLG-ICKVNVATELK 236 (284)
T ss_pred HHHCC-CeEEEeCcHHH
Confidence 99999 55577776654
No 200
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.50 E-value=0.0015 Score=64.02 Aligned_cols=137 Identities=17% Similarity=0.066 Sum_probs=81.4
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
+.+-++.+.++|.|.|.||+. .|...|+++--| + .++++.+++ .+ -+|.. ..
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgr--------------t~~~~h~~~~~~-~---~~i~~~ik~-~~-ipVIa--G~------ 194 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGT--------------VVSAEHVSKEGE-P---LNLKEFIYE-LD-VPVIV--GG------ 194 (368)
T ss_pred HHHHHHHHHHCCCCEEEEecc--------------chhhhccCCcCC-H---HHHHHHHHH-CC-CCEEE--eC------
Confidence 567777888999999999852 445566554221 2 233444443 33 24432 10
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCc---ccCCCC--CCCCchhhHhHHHh-------c---CCCeEeeCCC-C
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRL---FNAQDK--LDAPPYSLLPMRKA-------F---DGTFIASGGY-N 306 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~---~~~~~~--~~~~~~~~~~ik~~-------~---~~pVi~~Ggi-t 306 (371)
-.+.+ .++.+.++|+|.|-+..+.- ...... ..+....+..+.+. + ++|||+.||| +
T Consensus 195 ---V~t~e----~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~ 267 (368)
T PRK08649 195 ---CVTYT----TALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGT 267 (368)
T ss_pred ---CCCHH----HHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCC
Confidence 11233 44555679999997743321 100000 11111222222211 1 5899999999 8
Q ss_pred HHHHHHHHHcCCccEEEechHhhhCCcHH
Q 017448 307 RDDGNKAVAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 307 ~~~a~~~l~~g~~D~V~~gR~~ladP~l~ 335 (371)
..++.++|+-| +|.|+||+.|+.-.+-+
T Consensus 268 ~~diakAlalG-Ad~Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 268 SGDIAKAIACG-ADAVMLGSPLARAAEAP 295 (368)
T ss_pred HHHHHHHHHcC-CCeecccchhcccccCC
Confidence 99999999998 99999999999866643
No 201
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.50 E-value=0.0037 Score=57.20 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhCCcc-cEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 214 ALEIVEAVVNEIGAER-VGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~-i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
..|.+++.+.-+.+.+ |. ++ ..+| ..+|++|++.|+..+---....+.- -+-.+...++.|+
T Consensus 123 ~~etl~Aae~Lv~eGF~Vl----PY------~~~D-----~v~a~rLed~Gc~aVMPlgsPIGSg--~Gl~n~~~l~~i~ 185 (267)
T CHL00162 123 PIGTLKAAEFLVKKGFTVL----PY------INAD-----PMLAKHLEDIGCATVMPLGSPIGSG--QGLQNLLNLQIII 185 (267)
T ss_pred hHHHHHHHHHHHHCCCEEe----ec------CCCC-----HHHHHHHHHcCCeEEeeccCcccCC--CCCCCHHHHHHHH
Confidence 4888999998886532 32 22 1122 2489999999988775322111111 1234567889999
Q ss_pred HhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHH
Q 017448 293 KAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 293 ~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~ 335 (371)
+..++||+..+|| +++++..+++-| ||.|.+..+...-+|..
T Consensus 186 e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~nSaIakA~dP~ 228 (267)
T CHL00162 186 ENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLNTAVAQAKNPE 228 (267)
T ss_pred HcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeecceeecCCCHH
Confidence 9999999999999 999999999999 99999999988777654
No 202
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.47 E-value=0.00075 Score=61.80 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=69.4
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+++.|++.+++..-..... ....+...++.+++.+++|+...|++ +.++++++++.| +|.|.++-.++.|
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~~~~--g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G-a~~vvlgs~~l~d 107 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDGAKE--GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG-VDRVIIGTAAVEN 107 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccc--CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEEChHHhhC
Confidence 4688889999999999864322111 22335667888999899999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhC
Q 017448 332 PDLPKRFELN 341 (371)
Q Consensus 332 P~l~~k~~~g 341 (371)
|++..++.+.
T Consensus 108 ~~~~~~~~~~ 117 (230)
T TIGR00007 108 PDLVKELLKE 117 (230)
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 203
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.45 E-value=0.00079 Score=61.12 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=118.7
Q ss_pred HHHHHHcc-cCceEEEccce-eCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCC
Q 017448 51 LYYSQRTT-NGGFLIAEATG-VNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAP 128 (371)
Q Consensus 51 ~~y~~~a~-g~Glii~e~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~ 128 (371)
+..++.+. |...|++++.. |+ -+.+.+++++++++.-++++--.. ...
T Consensus 18 ~~~~~~~~~gtdai~vGGS~~vt-----------------~~~~~~~v~~ik~~~lPvilfp~~-------------~~~ 67 (223)
T TIGR01768 18 EIAKAAAESGTDAILIGGSQGVT-----------------YEKTDTLIEALRRYGLPIILFPSN-------------PTN 67 (223)
T ss_pred HHHHHHHhcCCCEEEEcCCCccc-----------------HHHHHHHHHHHhccCCCEEEeCCC-------------ccc
Confidence 34555555 67677776541 22 236777888999888666653321 111
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchh
Q 017448 129 ISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLE 208 (371)
Q Consensus 129 ~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~e 208 (371)
+.|.+.. .-.|.-|+..+...++...++++....+.+ .|+ ..-||++= |. |+.
T Consensus 68 i~~~aDa---------~l~~svlNs~~~~~iig~~~~~~~~~~~~~---~e~-ip~gYiv~-------~~-----~~~-- 120 (223)
T TIGR01768 68 VSRDADA---------LFFPSVLNSDDPYWIIGAQIEAAPKFKKIG---EEI-IPEGYIIV-------NP-----GGA-- 120 (223)
T ss_pred cCcCCCE---------EEEEEeecCCCchHHHhHHHHHHHHHhhhc---cee-cceEEEEE-------CC-----Ccc--
Confidence 2222211 113445667777888888888888777665 332 22344432 10 100
Q ss_pred hhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhh
Q 017448 209 NRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSL 288 (371)
Q Consensus 209 nR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~ 288 (371)
+ ..++. .+--+. .......+..++.++-...+=||+-+.+. +.+.+...+
T Consensus 121 ---------v----~~v~~----a~~~p~-------~~~~~aa~~~lA~~~~g~~~vYlE~gs~~------g~~v~~e~i 170 (223)
T TIGR01768 121 ---------A----ARVTK----AKPIPY-------DKEDLAAYAAMAEEMLGMPIIYLEAGSGA------PEPVPPELV 170 (223)
T ss_pred ---------e----eeccc----ccccCC-------CcHHHHHHHHHHHHHcCCcEEEEEecCCC------CCCcCHHHH
Confidence 0 00010 000010 01122333444544443345566654332 233456788
Q ss_pred HhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 289 LPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 289 ~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
+.+|+.+ +.|++.+||| ++++++++++.| +|.|.+|..+..||+++.+..
T Consensus 171 ~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~dp~~~~~~v 222 (223)
T TIGR01768 171 AEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEEDVDKALETI 222 (223)
T ss_pred HHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhhCHHHHHHhh
Confidence 9999998 8999999999 899999999888 999999999999999988753
No 204
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.44 E-value=0.0013 Score=60.94 Aligned_cols=84 Identities=17% Similarity=0.025 Sum_probs=68.9
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..++.+.+.|..++|+..-.... ....+...++.+.+.+.+|+...||+ |.++++.+++.| +|-|.+|..++.||
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~a~---g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a~~vvigT~a~~~p 110 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDAAF---GGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-RARVNGGTAALENP 110 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCCCC---CCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-CCEEEECchhhCCH
Confidence 46677788899999987543211 23345677888888889999999999 899999999998 99999999999999
Q ss_pred cHHHHHHhC
Q 017448 333 DLPKRFELN 341 (371)
Q Consensus 333 ~l~~k~~~g 341 (371)
+|.+++.+.
T Consensus 111 ~~~~~~~~~ 119 (243)
T TIGR01919 111 WWAAAVIRY 119 (243)
T ss_pred HHHHHHHHH
Confidence 999988763
No 205
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.38 E-value=0.0091 Score=53.87 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=41.1
Q ss_pred chhhHhHHHhc--CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhC
Q 017448 285 PYSLLPMRKAF--DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 285 ~~~~~~ik~~~--~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
...++.+++.+ ++|++..||++.+++.++++.| +|.|+++++++..
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~ 185 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence 45678888888 4999999999999999999998 9999999999864
No 206
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.37 E-value=0.0033 Score=58.15 Aligned_cols=138 Identities=16% Similarity=0.093 Sum_probs=87.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
.+.+++..++|+|-|-|...- ++| +.+ ++.+ +..|.. .+++..........
T Consensus 85 ~e~~~~~l~~Ga~rvvigT~a----------------------~~~-p~~----l~~~-~~~~~~ivvslD~k~g~v~~~ 136 (241)
T PRK14114 85 LDYAEKLRKLGYRRQIVSSKV----------------------LED-PSF----LKFL-KEIDVEPVFSLDTRGGKVAFK 136 (241)
T ss_pred HHHHHHHHHCCCCEEEECchh----------------------hCC-HHH----HHHH-HHhCCCEEEEEEccCCEEeeC
Confidence 467778888999998764432 111 334 4444 235654 45555432110110
Q ss_pred CCC-CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHc----
Q 017448 243 AQD-SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAE---- 316 (371)
Q Consensus 243 ~~~-~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~---- 316 (371)
+| ..+.-...++++.+++.|+..+-++.-..... ...++...++.+++.+++||++.||+ +.++..++.+-
T Consensus 137 -gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt--~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~ 213 (241)
T PRK14114 137 -GWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--LQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRET 213 (241)
T ss_pred -CCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc--CCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhccccc
Confidence 11 11112246789999999987765543221111 12456778889999999999999999 89999988875
Q ss_pred -CCccEEEechHhhhCC
Q 017448 317 -NYTDLVAYGRSFLANP 332 (371)
Q Consensus 317 -g~~D~V~~gR~~ladP 332 (371)
|.++.|.+|+++...-
T Consensus 214 ~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 214 NGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CCcEEEEEEehHHHCCC
Confidence 4599999999987653
No 207
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.37 E-value=0.025 Score=53.25 Aligned_cols=193 Identities=16% Similarity=0.107 Sum_probs=115.6
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccC-C-CC---CCC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTY-G-FQ---PNG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~-~-~~---~~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+......-.. . +. ..- ...-.|-.+.++ +..+.
T Consensus 23 ~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLD-----------H~~~~--------- 82 (276)
T cd00947 23 LETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLD-----------HGSSF--------- 82 (276)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECC-----------CCCCH---------
Confidence 4577889999999999999999754221000 0 00 000 000001111111 11222
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~ 239 (371)
+..++|.++||+-|-|.+.+- +++...+...++++-.++. |-. -|| ++...++
T Consensus 83 --~~i~~ai~~GftSVMiD~S~l--------------------~~eeNi~~t~~vv~~ah~~-gv~VEaElG-~i~g~e~ 138 (276)
T cd00947 83 --ELIKRAIRAGFSSVMIDGSHL--------------------PFEENVAKTKEVVELAHAY-GVSVEAELG-RIGGEED 138 (276)
T ss_pred --HHHHHHHHhCCCEEEeCCCCC--------------------CHHHHHHHHHHHHHHHHHc-CCeEEEEEe-eecCccC
Confidence 333466789999999987651 3677799999999998875 221 122 1221111
Q ss_pred cC--cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHHHH
Q 017448 240 YM--EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGNKA 313 (371)
Q Consensus 240 ~~--~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~~~ 313 (371)
.. +.....+++++.++++ +.|+|+|.++-|+....++. +.-+.+.+++|++.+++|++.=|+ +..++..++
T Consensus 139 ~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~a 215 (276)
T cd00947 139 GVVGDEGLLTDPEEAEEFVE---ETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKA 215 (276)
T ss_pred CcccccccCCCHHHHHHHHH---HHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHH
Confidence 10 0001224566666655 45899999998887665532 223456789999999999765554 577889999
Q ss_pred HHcCCccEEEechHhh
Q 017448 314 VAENYTDLVAYGRSFL 329 (371)
Q Consensus 314 l~~g~~D~V~~gR~~l 329 (371)
++.| +-=|=++..+.
T Consensus 216 i~~G-i~KiNi~T~l~ 230 (276)
T cd00947 216 IKLG-VCKININTDLR 230 (276)
T ss_pred HHcC-CeEEEeChHHH
Confidence 9999 55577776653
No 208
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.33 E-value=0.007 Score=56.06 Aligned_cols=141 Identities=13% Similarity=0.053 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC--c-ccEEEEcCcc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA--E-RVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~--~-~i~vrl~~~~ 238 (371)
++.+.+++..++|++||.|--.. .++|....|+...-...-..+.|++++++... + +|..|.....
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~-----------~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~ 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQV-----------GPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALL 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCC-----------CCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchh
Confidence 45677788888999999995443 33555445543222344456667777777654 5 6777755421
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCH--HHHHHHHHc
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNR--DDGNKAVAE 316 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~--~~a~~~l~~ 316 (371)
.+....+++++-++...++|+|.+-+..+ .....++.+.+..+.||+.+-.-.. ...+++-+-
T Consensus 154 -----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~----------~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~l 218 (243)
T cd00377 154 -----AGEEGLDEAIERAKAYAEAGADGIFVEGL----------KDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAEL 218 (243)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCCEEEeCCC----------CCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHC
Confidence 01135788999999999999999987443 1346677788888899766522111 234455555
Q ss_pred CCccEEEechHhh
Q 017448 317 NYTDLVAYGRSFL 329 (371)
Q Consensus 317 g~~D~V~~gR~~l 329 (371)
| +.+|.++-.++
T Consensus 219 G-~~~v~~~~~~~ 230 (243)
T cd00377 219 G-VRRVSYGLALL 230 (243)
T ss_pred C-CeEEEEChHHH
Confidence 6 99999876543
No 209
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0035 Score=56.45 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC-----
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN----- 239 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~----- 239 (371)
+-+++...+|+|=|-||.+- ++| -++|+.+-++.|...|.|-|.+...
T Consensus 87 eD~~~ll~aGADKVSINsaA----------------------v~~-----p~lI~~~a~~FGsQciVvaIDakr~~~g~~ 139 (256)
T COG0107 87 EDARKLLRAGADKVSINSAA----------------------VKD-----PELITEAADRFGSQCIVVAIDAKRVPDGEN 139 (256)
T ss_pred HHHHHHHHcCCCeeeeChhH----------------------hcC-----hHHHHHHHHHhCCceEEEEEEeeeccCCCC
Confidence 44557788999999998764 111 4578888888898733332222111
Q ss_pred --c---CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHH
Q 017448 240 --Y---MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKA 313 (371)
Q Consensus 240 --~---~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~ 313 (371)
+ ...+...+--++++.+++.++.|+-=|-+..-..... .......+++.|++.+++|||++||. +++...++
T Consensus 140 ~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt--k~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~ea 217 (256)
T COG0107 140 GWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT--KAGYDLELTRAVREAVNIPVIASGGAGKPEHFVEA 217 (256)
T ss_pred CcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccc--ccCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHH
Confidence 1 1111122333478899999999987665533221111 23456778999999999999999999 99999999
Q ss_pred HHcCCccEEEechHh
Q 017448 314 VAENYTDLVAYGRSF 328 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ 328 (371)
+.+|.+|.+..+-=|
T Consensus 218 f~~~~adAaLAAsiF 232 (256)
T COG0107 218 FTEGKADAALAASIF 232 (256)
T ss_pred HHhcCccHHHhhhhh
Confidence 999999987665443
No 210
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.29 E-value=0.0076 Score=59.41 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=82.8
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEE-EEcCccCcCcCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGI-RLSPHANYMEAQD 245 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~v-rl~~~~~~~~~~~ 245 (371)
++.+.++|+|.+-+|+..+ ...+.+.++++|+. |- .+++ =+++
T Consensus 243 v~~~a~aGAD~vTVH~ea~-------------------------~~ti~~ai~~akk~-Gi-kvgVD~lnp--------- 286 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-------------------------ISTIEKAIHEAQKT-GI-YSILDMLNV--------- 286 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-------------------------HHHHHHHHHHHHHc-CC-EEEEEEcCC---------
Confidence 6667789999999997542 12356667777664 32 4555 3343
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh-cCCCeEeeCCCCHHHHHHHHHcCCccEEEe
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA-FDGTFIASGGYNRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~-~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~ 324 (371)
.++.+ .++.+ ..++|++.++.+.... . . ...+..++.+|+. .+.+|.+.||++.+...++++.| +|.+.+
T Consensus 287 ~tp~e----~i~~l-~~~vD~Vllht~vdp~-~-~-~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aG-ADivVV 357 (391)
T PRK13307 287 EDPVK----LLESL-KVKPDVVELHRGIDEE-G-T-EHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAG-ADILVV 357 (391)
T ss_pred CCHHH----HHHHh-hCCCCEEEEccccCCC-c-c-cchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcC-CCEEEE
Confidence 22333 44444 5589999887532211 1 1 1123456667775 35689999999999999999988 999999
Q ss_pred chHhhhCCcHH
Q 017448 325 GRSFLANPDLP 335 (371)
Q Consensus 325 gR~~ladP~l~ 335 (371)
||++...+|..
T Consensus 358 GsaIf~a~Dp~ 368 (391)
T PRK13307 358 GRAITKSKDVR 368 (391)
T ss_pred eHHHhCCCCHH
Confidence 99999777753
No 211
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=97.29 E-value=0.0019 Score=63.48 Aligned_cols=98 Identities=14% Similarity=-0.015 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH
Q 017448 214 ALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK 293 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~ 293 (371)
.-+-|+.+|+.++ -||.+|=-. +.+ -++.+.+.|+|.|.|+...-.... ...+-...+.++++
T Consensus 241 tW~~i~~lr~~~~-~pvivKgV~-----------~~~----dA~~a~~~G~d~I~vsnhGGr~~d-~~~~t~~~L~ei~~ 303 (383)
T cd03332 241 TWEDLAFLREWTD-LPIVLKGIL-----------HPD----DARRAVEAGVDGVVVSNHGGRQVD-GSIAALDALPEIVE 303 (383)
T ss_pred CHHHHHHHHHhcC-CCEEEecCC-----------CHH----HHHHHHHCCCCEEEEcCCCCcCCC-CCcCHHHHHHHHHH
Confidence 3477888998874 377776211 222 345667889999999753211111 12222345667877
Q ss_pred hc--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 294 AF--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 294 ~~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
.+ ++||++.||+ +..+..++|.-| +|+|++||+++
T Consensus 304 ~~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l 341 (383)
T cd03332 304 AVGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA 341 (383)
T ss_pred HhcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 77 4899999999 899999999999 99999999999
No 212
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.003 Score=57.64 Aligned_cols=139 Identities=18% Similarity=0.102 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
.+.+++..++|.+-|-|-..- ++| .+.++.+.+..|+. .|++..+....-.
T Consensus 87 ~~~v~~ll~~G~~rViiGt~a----------------------v~~-----p~~v~~~~~~~g~rivv~lD~r~g~vav- 138 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAA----------------------VKN-----PDLVKELCEEYGDRIVVALDARDGKVAV- 138 (241)
T ss_pred HHHHHHHHHCCCCEEEEecce----------------------ecC-----HHHHHHHHHHcCCcEEEEEEccCCcccc-
Confidence 467778888999998863221 111 45566677778843 3444443321111
Q ss_pred CCCCC-hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 243 AQDSN-PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 243 ~~~~~-~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
.+|.. +.-+..++++.+++.|+..+-++.-..... -...+....+++.+.+++||++.||+ +.+|.+.+-+...++
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt--l~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~ 216 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT--LSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVE 216 (241)
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecccccc--cCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCc
Confidence 12221 222356799999999988765554322211 12456788899999999999999999 788888887772399
Q ss_pred EEEechHhhhCC
Q 017448 321 LVAYGRSFLANP 332 (371)
Q Consensus 321 ~V~~gR~~ladP 332 (371)
.|.+||++...-
T Consensus 217 GvIvG~ALy~g~ 228 (241)
T COG0106 217 GVIVGRALYEGK 228 (241)
T ss_pred EEEEehHHhcCC
Confidence 999999998764
No 213
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.28 E-value=0.039 Score=52.21 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=115.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcc-ccCC-CCC---CC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRV-STYG-FQP---NG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~-~~~~-~~~---~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
.+..+.++++..+.++++++|+...... .... +.. .- ...--|-.+.++ .. .+.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLD---------H~--~~~--------- 87 (284)
T PRK12857 28 MEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLD---------HG--TDF--------- 87 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECC---------CC--CCH---------
Confidence 4677889999999999999999764321 0000 000 00 000001111111 11 121
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~ 239 (371)
+..++|.++||+-|-+.+.+- ++|...+...++++-.+. .|-. -||. +...++
T Consensus 88 --e~i~~ai~~GftSVM~DgS~l--------------------p~eeNi~~T~~vv~~Ah~-~gvsVEaElG~-vgg~e~ 143 (284)
T PRK12857 88 --EQVMKCIRNGFTSVMIDGSKL--------------------PLEENIALTKKVVEIAHA-VGVSVEAELGK-IGGTED 143 (284)
T ss_pred --HHHHHHHHcCCCeEEEeCCCC--------------------CHHHHHHHHHHHHHHHHH-cCCEEEEEeee-cCCccC
Confidence 346677778999999887661 467789999999999875 3321 1221 221111
Q ss_pred c-CcCC---CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHHH
Q 017448 240 Y-MEAQ---DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGNK 312 (371)
Q Consensus 240 ~-~~~~---~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~~ 312 (371)
. .... ...+.+++.+|++ +.|||.|.++-|+....++. +.-+.+.+++|++.+++|++.=|+ +..++..+
T Consensus 144 ~~~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ 220 (284)
T PRK12857 144 DITVDEREAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRK 220 (284)
T ss_pred CCCcccchhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHH
Confidence 1 0000 0124556666654 56999999998886665532 233456788999999999665554 67889999
Q ss_pred HHHcCCccEEEechHhh
Q 017448 313 AVAENYTDLVAYGRSFL 329 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~l 329 (371)
+++.| +-=|=++..+.
T Consensus 221 ai~~G-i~KiNi~T~~~ 236 (284)
T PRK12857 221 AISLG-VRKVNIDTNIR 236 (284)
T ss_pred HHHcC-CeEEEeCcHHH
Confidence 99999 55566666543
No 214
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.27 E-value=0.0052 Score=59.56 Aligned_cols=123 Identities=23% Similarity=0.153 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
|......+.+.+.+.|-.+.|. | ..++++.+++. |- .+....+.
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~---------p-------------------~~~~i~~l~~~-gi-~v~~~v~s------ 145 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGL---------P-------------------PPEVIERLHAA-GI-KVIPQVTS------ 145 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSS---------C--------------------HHHHHHHHHT-T--EEEEEESS------
T ss_pred cccccccccccceEEEEeeccc---------c-------------------hHHHHHHHHHc-CC-ccccccCC------
Confidence 4455556667788899988776 2 14566666653 21 33333332
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC-C-CCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCc
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK-L-DAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYT 319 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~-~-~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~ 319 (371)
. +.++.+.+.|+|.|-+...-..... . . .....+...+++.+++|||+.||| +..++..+|.-| +
T Consensus 146 ------~----~~A~~a~~~G~D~iv~qG~eAGGH~-g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG-A 213 (330)
T PF03060_consen 146 ------V----REARKAAKAGADAIVAQGPEAGGHR-GFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALALG-A 213 (330)
T ss_dssp ------H----HHHHHHHHTT-SEEEEE-TTSSEE----SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT--
T ss_pred ------H----HHHHHhhhcCCCEEEEeccccCCCC-CccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC-C
Confidence 2 3566788899999987543222211 1 1 112345678999999999999999 999999999999 9
Q ss_pred cEEEechHhhhCCc
Q 017448 320 DLVAYGRSFLANPD 333 (371)
Q Consensus 320 D~V~~gR~~ladP~ 333 (371)
|+|.||..|++-++
T Consensus 214 ~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 214 DGVQMGTRFLATEE 227 (330)
T ss_dssp SEEEESHHHHTSTT
T ss_pred CEeecCCeEEeccc
Confidence 99999999998774
No 215
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.25 E-value=0.0014 Score=60.22 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++++.+.+.|++++|+..-.... ....+...++.+.+.+.+|+...||+ +.+++++++..| |+-|.+|...+.|
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~~---~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G-a~~viigt~~~~~ 113 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAIM---GRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRG-ASRVIVGTETLPS 113 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcccc---CCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-CCeEEEcceeccc
Confidence 458899999999999997643221 23456677888888888999999999 899999999998 9999999999999
Q ss_pred CcHHHHHHhCC
Q 017448 332 PDLPKRFELNA 342 (371)
Q Consensus 332 P~l~~k~~~g~ 342 (371)
+|.+++.+.-
T Consensus 114 -~~~~~~~~~~ 123 (233)
T cd04723 114 -DDDEDRLAAL 123 (233)
T ss_pred -hHHHHHHHhc
Confidence 9998887754
No 216
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.24 E-value=0.0026 Score=57.26 Aligned_cols=79 Identities=16% Similarity=0.077 Sum_probs=57.5
Q ss_pred HHhhcCccEEEEcCCCcccCCCCC---CCCchhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 258 ALNKYQILYLHILEPRLFNAQDKL---DAPPYSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~~~---~~~~~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
+..+.|+||+-++. .+....++. ......++.+++.++ +||++.||++.+++.++++.| +|+|++|+++...++
T Consensus 119 ~a~~~gaD~v~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d 196 (212)
T PRK00043 119 AALAAGADYVGVGP-IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAED 196 (212)
T ss_pred HHhHcCCCEEEECC-ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCC
Confidence 34467999998752 221111011 112456778888887 999999999999999999998 999999999998887
Q ss_pred HHHHH
Q 017448 334 LPKRF 338 (371)
Q Consensus 334 l~~k~ 338 (371)
..+.+
T Consensus 197 ~~~~~ 201 (212)
T PRK00043 197 PEAAA 201 (212)
T ss_pred HHHHH
Confidence 54433
No 217
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.22 E-value=0.0075 Score=55.82 Aligned_cols=140 Identities=17% Similarity=0.044 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCcc---C
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHA---N 239 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~---~ 239 (371)
.+.++++.++|+|-|-|...- + +.+ ++++.+-+..|.. .+++...... .
T Consensus 86 ~e~~~~~l~~Ga~~vvigT~a----------------------~-~~p----~~~~~~~~~~g~~ivvslD~k~~g~~~~ 138 (243)
T TIGR01919 86 DSSLRAALTGGRARVNGGTAA----------------------L-ENP----WWAAAVIRYGGDIVAVGLDVLEDGEWHT 138 (243)
T ss_pred HHHHHHHHHcCCCEEEECchh----------------------h-CCH----HHHHHHHHHccccEEEEEEEecCCceEE
Confidence 467778888999998764332 1 113 3444445555655 4555543111 1
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHH--HHc
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKA--VAE 316 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~--l~~ 316 (371)
....++..+.....++++.+++.|+..+-++.-..... ...++...++.+++.+++||++.||+ +.++..++ +..
T Consensus 139 v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt--~~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~ 216 (243)
T TIGR01919 139 LGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL--SGGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDE 216 (243)
T ss_pred EECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc--CCCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhcc
Confidence 11112222233456789999999987665543222111 23456778899999999999999999 88998876 434
Q ss_pred CCccEEEechHhhhCC
Q 017448 317 NYTDLVAYGRSFLANP 332 (371)
Q Consensus 317 g~~D~V~~gR~~ladP 332 (371)
..+|.|.+|+++...-
T Consensus 217 ~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 217 GGVSVAIGGKLLYARF 232 (243)
T ss_pred CCeeEEEEhHHHHcCC
Confidence 4599999999987654
No 218
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.21 E-value=0.027 Score=51.11 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHc-CCCEEecc--cccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc-cEEEEcC
Q 017448 161 NDFRLAGRNAIKA-GFDGVEIH--GANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSP 236 (371)
Q Consensus 161 ~~f~~aA~~a~~a-G~DgVei~--~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~-i~vrl~~ 236 (371)
++=++.|+.|.|+ |-|-|+|- .-.-| |-| | ..|.+++.+.-+.+.+ |.-=++
T Consensus 76 ~EAv~~A~laRe~~~t~wIKLEVi~D~~~-----L~P------D------------~~etl~Aae~Lv~eGF~VlPY~~- 131 (247)
T PF05690_consen 76 EEAVRTARLAREAFGTNWIKLEVIGDDKT-----LLP------D------------PIETLKAAEILVKEGFVVLPYCT- 131 (247)
T ss_dssp HHHHHHHHHHHHTTS-SEEEE--BS-TTT-------B-------------------HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCCCC-----cCC------C------------hhHHHHHHHHHHHCCCEEeecCC-
Confidence 3457888999886 66877553 32211 111 2 5889999999886532 322112
Q ss_pred ccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHH
Q 017448 237 HANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVA 315 (371)
Q Consensus 237 ~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~ 315 (371)
+| ..+|++|++.|+..+---....+.- -+-.+...++.|++.+++|||+-.|| ++.++.++++
T Consensus 132 ---------~D-----~v~akrL~d~GcaavMPlgsPIGSg--~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME 195 (247)
T PF05690_consen 132 ---------DD-----PVLAKRLEDAGCAAVMPLGSPIGSG--RGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME 195 (247)
T ss_dssp ---------S------HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH
T ss_pred ---------CC-----HHHHHHHHHCCCCEEEecccccccC--cCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Confidence 22 3589999999988775432211111 12335677899999999999999999 9999999999
Q ss_pred cCCccEEEechHhhhCCc
Q 017448 316 ENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 316 ~g~~D~V~~gR~~ladP~ 333 (371)
-| ||.|.+..+...-.|
T Consensus 196 lG-~daVLvNTAiA~A~d 212 (247)
T PF05690_consen 196 LG-ADAVLVNTAIAKAKD 212 (247)
T ss_dssp TT--SEEEESHHHHTSSS
T ss_pred cC-CceeehhhHHhccCC
Confidence 99 999999888765444
No 219
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.20 E-value=0.0016 Score=59.76 Aligned_cols=136 Identities=17% Similarity=0.077 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCc-cCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPH-ANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~-~~~ 240 (371)
.+.+++..++|+|-|-|+..- -+.+ ++++.+.+..|++ .+++.+... .-.
T Consensus 85 ~ed~~~ll~~Ga~~Vvigt~~-----------------------~~~~----~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 85 IEDAERLLDAGADRVVIGTEA-----------------------LEDP----ELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp HHHHHHHHHTT-SEEEESHHH-----------------------HHCC----HHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred HHHHHHHHHhCCCEEEeChHH-----------------------hhch----hHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 467788889999988875431 1112 4466666777874 356655542 111
Q ss_pred CcCCCCC-hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCC
Q 017448 241 MEAQDSN-PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENY 318 (371)
Q Consensus 241 ~~~~~~~-~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~ 318 (371)
.. ++.. +.-...++++.+.+.|+.-+-++.=..... ...++.+.++.+++.+++||++.||+ +.++..++.+.|
T Consensus 138 ~~-gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt--~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G- 213 (229)
T PF00977_consen 138 TN-GWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT--MQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG- 213 (229)
T ss_dssp ET-TTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT--SSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-
T ss_pred ec-CccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC--cCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-
Confidence 11 1211 112245688999999988665543222111 12345678899999999999999999 899999999888
Q ss_pred ccEEEechHhhh
Q 017448 319 TDLVAYGRSFLA 330 (371)
Q Consensus 319 ~D~V~~gR~~la 330 (371)
+|.|.+|++|..
T Consensus 214 ~~gvivg~al~~ 225 (229)
T PF00977_consen 214 IDGVIVGSALHE 225 (229)
T ss_dssp ECEEEESHHHHT
T ss_pred CcEEEEehHhhC
Confidence 899999999854
No 220
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.17 E-value=0.06 Score=50.97 Aligned_cols=140 Identities=14% Similarity=0.056 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhC-Cc-ccEEEEcCccC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIG-AE-RVGIRLSPHAN 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg-~~-~i~vrl~~~~~ 239 (371)
+..+.+++..++|..||.|-=.. .++|...++|.-.-......+-|++++++.. ++ .|..|.....
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~-----------~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~- 156 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQV-----------LPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARA- 156 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCccc-
Confidence 45677888899999999885332 3567766665422223344555666666653 33 4666776531
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeE---eeCCCCH-HHHHHHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFI---ASGGYNR-DDGNKAVA 315 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi---~~Ggit~-~~a~~~l~ 315 (371)
....+++++-++...++|.|.+-+... .....++.+.+.++.|++ ..++-++ ...+++-+
T Consensus 157 ------~~g~deAI~Ra~ay~~AGAD~vfi~g~----------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~ 220 (285)
T TIGR02317 157 ------VEGLDAAIERAKAYVEAGADMIFPEAL----------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELRE 220 (285)
T ss_pred ------ccCHHHHHHHHHHHHHcCCCEEEeCCC----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH
Confidence 124778999999999999999887432 234567778888888973 3334333 24666666
Q ss_pred cCCccEEEechHhhh
Q 017448 316 ENYTDLVAYGRSFLA 330 (371)
Q Consensus 316 ~g~~D~V~~gR~~la 330 (371)
-| +.+|.++-.++.
T Consensus 221 lG-v~~v~~~~~~~~ 234 (285)
T TIGR02317 221 AG-YKMVIYPVTAFR 234 (285)
T ss_pred cC-CcEEEEchHHHH
Confidence 77 999999955543
No 221
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.15 E-value=0.006 Score=57.30 Aligned_cols=106 Identities=14% Similarity=0.055 Sum_probs=73.4
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-+..- ..|...+. .+-++.+|+.+++. +|+|-.+. .++ +.+..+.|+|||-+
T Consensus 145 ~~HR~~L~d~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s------------~ee----a~~A~~~gaDyI~l 208 (268)
T cd01572 145 DNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET------------LEQ----LKEALEAGADIIML 208 (268)
T ss_pred ccccCCCcceeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECC------------HHH----HHHHHHcCCCEEEE
Confidence 46777666643 35655554 45688999999865 67664432 333 23345689999987
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
..- ..+.++++.+.. ++|+.+.||||.+.+.++.+.| +|+|+++....
T Consensus 209 d~~-----------~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~ 258 (268)
T cd01572 209 DNM-----------SPEELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH 258 (268)
T ss_pred CCc-----------CHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence 321 234455555554 5899999999999999999998 99999998655
No 222
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.15 E-value=0.044 Score=53.10 Aligned_cols=200 Identities=12% Similarity=0.071 Sum_probs=114.1
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcc-ccCCCCCCCCCCc---cc-CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRV-STYGFQPNGEAPI---SC-TSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~-~~~~~~~~~~~~~---~p-s~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
.+..+.+++++.+.++++++|+...-.. ........-.... ++ -++.++- +.. .+
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHL-------DHg--~~----------- 87 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQ-------DHG--NS----------- 87 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEC-------CCC--CC-----------
Confidence 5677889999999999999999753210 0000000000000 11 0111111 111 12
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~~ 240 (371)
.+..++|.++||+-|-|.+.|- | +++-+-+++...+...++++..+. .|-. -||. +...+..
T Consensus 88 ~e~i~~Ai~~GFtSVMiDgS~l--------~-----~~~~~~~~eeNI~~Trevve~Ah~-~GvsVEaELG~-igg~e~~ 152 (347)
T PRK13399 88 PATCQSAIRSGFTSVMMDGSLL--------A-----DGKTPASYDYNVDVTRRVTEMAHA-VGVSVEGELGC-LGSLETG 152 (347)
T ss_pred HHHHHHHHhcCCCEEEEeCCCC--------C-----CCCCccCHHHHHHHHHHHHHHHHH-cCCeEEEEeee-ccCcccc
Confidence 1346888899999999998771 1 123344688889999999998655 3321 1221 1111100
Q ss_pred -----CcC---------CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC---CC---CCchhhHhHHHhc-CCCe
Q 017448 241 -----MEA---------QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK---LD---APPYSLLPMRKAF-DGTF 299 (371)
Q Consensus 241 -----~~~---------~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~---~~---~~~~~~~~ik~~~-~~pV 299 (371)
.+. ....+.+++.+|++ +.|||.|-++-|+....++. +. -+.+.++.|++.+ ++|+
T Consensus 153 ~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPL 229 (347)
T PRK13399 153 EAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHL 229 (347)
T ss_pred cccccCCccccccccccccCCCHHHHHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCE
Confidence 000 00124566666655 46999999988876555422 11 3455788999999 6997
Q ss_pred EeeCC--CC---------------------HHHHHHHHHcCCccEEEechH
Q 017448 300 IASGG--YN---------------------RDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 300 i~~Gg--it---------------------~~~a~~~l~~g~~D~V~~gR~ 327 (371)
+.=|+ +. .++..++++.|. -=|=++..
T Consensus 230 VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI-~KINi~Td 279 (347)
T PRK13399 230 VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGV-RKVNIDTD 279 (347)
T ss_pred EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCC-eEEEeChH
Confidence 65554 33 478899999994 33555443
No 223
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.13 E-value=0.042 Score=53.17 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=114.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcc-ccCCCCCCCCCC---cc---cCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRV-STYGFQPNGEAP---IS---CTSKGVTPGLGGGDWSPPRPLRTEEIPQIVN 161 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~-~~~~~~~~~~~~---~~---ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~ 161 (371)
.+.++.+++++.+.++++++|+...-.. ....+...-... -+ |-.+.++ .. -+.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLD---------Hg--~~~-------- 88 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQD---------HG--NSP-------- 88 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECC---------CC--CCH--------
Confidence 4677889999999999999999753210 000000000000 00 1112111 11 121
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCcc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~ 238 (371)
+.+++|.++||+-|-|.+.|- |-.|.+. ++|...+...++++..+. .|-. -|| ++...+
T Consensus 89 ---e~i~~ai~~GftSVMiDgS~l--------~~~~~~~-----p~eENI~~Tkevve~Ah~-~Gv~VEaELG-~vgg~e 150 (347)
T PRK09196 89 ---ATCQRAIQLGFTSVMMDGSLK--------ADGKTPA-----SYEYNVDVTRKVVEMAHA-CGVSVEGELG-CLGSLE 150 (347)
T ss_pred ---HHHHHHHHcCCCEEEecCCCC--------cccCCCC-----CHHHHHHHHHHHHHHHHH-cCCeEEEEEe-eccCcc
Confidence 236778999999999998771 1123333 478889999999999854 3432 122 121111
Q ss_pred Cc-----CcC--C-------CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC---C---CCCchhhHhHHHhc-CC
Q 017448 239 NY-----MEA--Q-------DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK---L---DAPPYSLLPMRKAF-DG 297 (371)
Q Consensus 239 ~~-----~~~--~-------~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~---~---~~~~~~~~~ik~~~-~~ 297 (371)
+. .+. . ...+.+++.+|++ +.|||+|-++-|+....++. + .-+.+.+++|++.+ ++
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~v 227 (347)
T PRK09196 151 TGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNT 227 (347)
T ss_pred ccccccccCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCC
Confidence 00 000 0 0123555666654 56899999988876555421 1 13445788999999 79
Q ss_pred CeEeeCC--C---------------------CHHHHHHHHHcCCccEEEechHh
Q 017448 298 TFIASGG--Y---------------------NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 298 pVi~~Gg--i---------------------t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
|++.=|+ + ..++..++++.| +-=|=++..+
T Consensus 228 PLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~G-I~KINi~Tdl 280 (347)
T PRK09196 228 HLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHG-VRKVNIDTDL 280 (347)
T ss_pred CEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCC-CceEEeChHH
Confidence 9765554 3 447889999998 4445555544
No 224
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.12 E-value=0.0079 Score=56.07 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhh----------hHHHHHHHHHHHHHhCCccc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENR----------CRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR----------~r~~~eiv~avR~~vg~~~i 230 (371)
+.+.+.++.+.++|+|.|||-. |.++---| |.-+++- ++-++++++.+|+.-.+.||
T Consensus 24 ~~~~~~~~~l~~~GaD~iEiGi-----------PfSDP~AD--GpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pi 90 (259)
T PF00290_consen 24 ETTLEILKALEEAGADIIEIGI-----------PFSDPVAD--GPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPI 90 (259)
T ss_dssp HHHHHHHHHHHHTTBSSEEEE-------------SSSCTTS--SHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEE
T ss_pred HHHHHHHHHHHHcCCCEEEECC-----------CCCCCCCC--CHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCE
Confidence 5788999999999999999854 55666666 4333222 34567899999954433354
Q ss_pred EEEE--cCc-----cCc---------CcC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------------
Q 017448 231 GIRL--SPH-----ANY---------MEA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFN----------------- 276 (371)
Q Consensus 231 ~vrl--~~~-----~~~---------~~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------------- 276 (371)
.+-. |+. +.+ ++. .-+.+.|+...+...+.+.|++.|.+..++...
T Consensus 91 vlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 91 VLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp EEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred EEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 3321 110 000 010 113455666677777778888887776543110
Q ss_pred --CCCCCCC------CchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 --AQDKLDA------PPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 --~~~~~~~------~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
....+.. ...+++.+|+..+.||+++=|+ +++++.++. .+ +|+|.+|.+++.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-aDGvIVGSa~v~ 231 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-ADGVIVGSAFVK 231 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-SSEEEESHHHHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 0001111 1235678999999998888788 899999998 55 999999998764
No 225
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.12 E-value=0.013 Score=53.81 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.+++. ++.+++..-..... ....+...++.+.+.+++||++.||+ +.++++++++.| +|.|.+|+++..
T Consensus 148 ~~~~~~~~~~~-~~~li~~di~~~G~--~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivGsal~~ 223 (233)
T cd04723 148 PEELLRRLAKW-PEELIVLDIDRVGS--GQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASGALVASALHD 223 (233)
T ss_pred HHHHHHHHHHh-CCeEEEEEcCcccc--CCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEehHHHc
Confidence 34577778887 88777754322111 12355677888888899999999999 899999999988 999999999876
Q ss_pred C
Q 017448 331 N 331 (371)
Q Consensus 331 d 331 (371)
.
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 5
No 226
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.12 E-value=0.0095 Score=54.30 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=78.9
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEA 250 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e 250 (371)
.++|+|-|-+|.=. +..+.++++.||+. |- ..|+=+++. .+.+
T Consensus 78 ~~~gad~i~~H~Ea--------------------------~~~~~~~l~~ik~~-g~-k~GlalnP~---------Tp~~ 120 (220)
T PRK08883 78 AKAGASMITFHVEA--------------------------SEHVDRTLQLIKEH-GC-QAGVVLNPA---------TPLH 120 (220)
T ss_pred HHhCCCEEEEcccC--------------------------cccHHHHHHHHHHc-CC-cEEEEeCCC---------CCHH
Confidence 35899999998742 11256778888874 42 467778873 3555
Q ss_pred HHHHHHHHHhhcCccEEEEc--CCCcccCCCCCCCCchhhHhHHHhc-----CCCeEeeCCCCHHHHHHHHHcCCccEEE
Q 017448 251 LGLYMAKALNKYQILYLHIL--EPRLFNAQDKLDAPPYSLLPMRKAF-----DGTFIASGGYNRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pVi~~Ggit~~~a~~~l~~g~~D~V~ 323 (371)
....++.. +|++-+. .|.+.... --+....-++++|+.. +.||.+-||++.+.+.++++.| +|.+.
T Consensus 121 ~i~~~l~~-----~D~vlvMtV~PGfgGq~-fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aG-Ad~vV 193 (220)
T PRK08883 121 HLEYIMDK-----VDLILLMSVNPGFGGQS-FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAG-ADMFV 193 (220)
T ss_pred HHHHHHHh-----CCeEEEEEecCCCCCce-ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC-CCEEE
Confidence 44444432 4555442 23332111 0011122345565554 3778899999999999999999 99999
Q ss_pred echHhhhCCcHHHHH
Q 017448 324 YGRSFLANPDLPKRF 338 (371)
Q Consensus 324 ~gR~~ladP~l~~k~ 338 (371)
+|++++..++..+.+
T Consensus 194 vGSaIf~~~d~~~~i 208 (220)
T PRK08883 194 AGSAIFGQPDYKAVI 208 (220)
T ss_pred EeHHHhCCCCHHHHH
Confidence 999999877754433
No 227
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0093 Score=53.80 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+.-++.|.+.|+|-|++-.--|+|.+ .++..+.+=|++|++++++. +-+|+=....
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~-------------------g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~---- 135 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKS-------------------GNWEAVEREIRAVVEACADA-VVLKVILETG---- 135 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhc-------------------CCHHHHHHHHHHHHHHhCCC-ceEEEEEecc----
Confidence 45567889999999997765554433 23677888899999999875 3444433221
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
..+.++-...++...++|+||+--|-+.. +...-....+.+++.+. +.|=+.||+ |.+++..+++.| ++
T Consensus 136 --~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~-----~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag-a~ 207 (228)
T COG0274 136 --LLTDEEKRKACEIAIEAGADFVKTSTGFS-----AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG-AT 207 (228)
T ss_pred --ccCHHHHHHHHHHHHHhCCCEEEcCCCCC-----CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh-HH
Confidence 22344457778888899999998766533 12233455667777775 447789999 999999999999 88
Q ss_pred EEEechHh
Q 017448 321 LVAYGRSF 328 (371)
Q Consensus 321 ~V~~gR~~ 328 (371)
-++...+.
T Consensus 208 RiGtSs~v 215 (228)
T COG0274 208 RIGTSSGV 215 (228)
T ss_pred HhccccHH
Confidence 88888765
No 228
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=97.11 E-value=0.048 Score=52.27 Aligned_cols=191 Identities=15% Similarity=0.056 Sum_probs=111.7
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccC----------CCC--CCCCCCCCCCCCCCCCChHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCT----------SKG--VTPGLGGGDWSPPRPLRTEEI 156 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps----------~~~--~~~~~~g~~~~~~~~mt~~eI 156 (371)
.+..+.+++++.+.++++++|+......- ... .....+++. .+| ++- +.. .+
T Consensus 34 ~e~~~avi~AAee~~sPvIlq~s~~~~~~-~g~--~~~~~~~~~~~~~a~~a~~~VPV~lHL-------DHg--~~---- 97 (321)
T PRK07084 34 MEQLQAIIQACVETKSPVILQVSKGARKY-ANA--TLLRYMAQGAVEYAKELGCPIPIVLHL-------DHG--DS---- 97 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhh-CCc--hHHHHHHHHHHHHHHHcCCCCcEEEEC-------CCC--CC----
Confidence 46788899999999999999997532110 000 000000100 111 110 111 12
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEE
Q 017448 157 PQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIR 233 (371)
Q Consensus 157 ~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vr 233 (371)
.+..++|.++||+-|-|.+.+- +++...+...++++..+. .|-. -|| +
T Consensus 98 -------~e~i~~ai~~GftSVMiD~S~l--------------------p~eeNI~~T~evv~~Ah~-~GvsVEaElG-~ 148 (321)
T PRK07084 98 -------FELCKDCIDSGFSSVMIDGSHL--------------------PYEENVALTKKVVEYAHQ-FDVTVEGELG-V 148 (321)
T ss_pred -------HHHHHHHHHcCCCEEEeeCCCC--------------------CHHHHHHHHHHHHHHHHH-cCCeEEEEEe-e
Confidence 1345788889999999887661 367779999999998875 2321 122 1
Q ss_pred EcCccCcC--cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC------CCCCchhhHhHHHhc-CCCeEeeC-
Q 017448 234 LSPHANYM--EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK------LDAPPYSLLPMRKAF-DGTFIASG- 303 (371)
Q Consensus 234 l~~~~~~~--~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~------~~~~~~~~~~ik~~~-~~pVi~~G- 303 (371)
+...++.. +.....+.+++.+|++ +.|||.|.++-|+....++. +.-+.+.++.|++.+ ++|++.=|
T Consensus 149 igg~ed~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGg 225 (321)
T PRK07084 149 LAGVEDEVSAEHHTYTQPEEVEDFVK---KTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGS 225 (321)
T ss_pred ecCccCCccCcccccCCHHHHHHHHH---HhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCC
Confidence 21111110 0001224566666655 46999999988886655522 223456788999999 69965433
Q ss_pred ----------------------CCCHHHHHHHHHcCCccEEEechHh
Q 017448 304 ----------------------GYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 304 ----------------------git~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
|+..++..++++.|. -=|=++..+
T Consensus 226 Sg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI-~KINi~Tdl 271 (321)
T PRK07084 226 SSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAV-CKINIDSDG 271 (321)
T ss_pred CCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCC-ceeccchHH
Confidence 344688999999994 445555544
No 229
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.10 E-value=0.0053 Score=56.25 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=114.3
Q ss_pred HHHcc-cCceEEEccce-eCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCccc
Q 017448 54 SQRTT-NGGFLIAEATG-VNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISC 131 (371)
Q Consensus 54 ~~~a~-g~Glii~e~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~p 131 (371)
+..+. |...|++|+.. |+ -+.+.++++++++..-++++--.. ...++|
T Consensus 26 ~~~~~~gtdai~vGGS~~vt-----------------~~~~~~~v~~ik~~~lPvilfp~~-------------~~~i~~ 75 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVT-----------------EENVDELVKAIKEYDLPVILFPGN-------------IEGISP 75 (232)
T ss_pred HHHHhcCCCEEEEcCCCccc-----------------hHHHHHHHHHHhcCCCCEEEeCCC-------------ccccCc
Confidence 44444 77677777542 22 135677888888876666653211 112333
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhh
Q 017448 132 TSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRC 211 (371)
Q Consensus 132 s~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~ 211 (371)
.+.. .-.|.-|+..+...++...++++...+..|.+ -..-||++-.= |+. .
T Consensus 76 ~aDa---------~l~~svlNs~~~~~iig~~~~~~~~~~~~~le----~ip~gYiv~~~------------~~~----v 126 (232)
T PRK04169 76 GADA---------YLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLE----VIPEGYIVLNP------------GSK----V 126 (232)
T ss_pred CCCE---------EEEEEEecCCCcchHhhHHHHHHHHHhhcCcE----ECceEEEEECC------------CCe----e
Confidence 3211 12344577777888999999999888666665 22345554311 100 0
Q ss_pred HHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHH--HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhH
Q 017448 212 RFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEAL--GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL 289 (371)
Q Consensus 212 r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~--~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~ 289 (371)
..++.. .+ ...+..+. +..++..+- |..++-+..+... ..+.+...++
T Consensus 127 -----------a~~~~~------~~-------~~~~~~~~~~~~~lA~~~~--g~~~vYle~gs~~----g~~~~~e~I~ 176 (232)
T PRK04169 127 -----------AVVGTA------AP-------IPLDKPDIAAYAALAAEYL--GMPIVYLEYGGGA----GDPVPPEMVK 176 (232)
T ss_pred -----------eeeecc------cc-------CCCChHHHHHHHHHHHHHc--CCCeEEEECCCCC----CCCCCHHHHH
Confidence 000000 00 00112222 233333333 4443333233211 2334567889
Q ss_pred hHHHhcCC-CeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCc-HHHHHH
Q 017448 290 PMRKAFDG-TFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPD-LPKRFE 339 (371)
Q Consensus 290 ~ik~~~~~-pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~-l~~k~~ 339 (371)
.+++.++. ||+.+||+ +++++++++..| +|.|.+|..+..||+ .++.++
T Consensus 177 ~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~ 228 (232)
T PRK04169 177 AVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIK 228 (232)
T ss_pred HHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHH
Confidence 99999998 99999999 899999999998 999999999999998 444443
No 230
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.08 E-value=0.0031 Score=61.61 Aligned_cols=98 Identities=14% Similarity=-0.017 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA 294 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~ 294 (371)
-+=|+-+|+..+ -||.||=-. .. +-++.+.+.|+|.|.|+...-.+.. ....-...+.++++.
T Consensus 213 W~di~wlr~~~~-~PiivKgV~-----------~~----~dA~~a~~~Gvd~I~VsnhGGrqld-~~~~t~~~L~ei~~a 275 (367)
T PLN02493 213 WKDVQWLQTITK-LPILVKGVL-----------TG----EDARIAIQAGAAGIIVSNHGARQLD-YVPATISALEEVVKA 275 (367)
T ss_pred HHHHHHHHhccC-CCEEeecCC-----------CH----HHHHHHHHcCCCEEEECCCCCCCCC-CchhHHHHHHHHHHH
Confidence 355788888774 367766432 12 3456778899999999763211111 111123445567676
Q ss_pred cC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 295 FD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 295 ~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
+. +||++.||| +..+..++|.-| +|+|++||+++.
T Consensus 276 v~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l~ 313 (367)
T PLN02493 276 TQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 313 (367)
T ss_pred hCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 54 889999999 899999999999 999999999983
No 231
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.07 E-value=0.049 Score=51.91 Aligned_cols=193 Identities=16% Similarity=0.097 Sum_probs=114.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcccc-CCCCCC----C-CCC-cccCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVST-YGFQPN----G-EAP-ISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVN 161 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~-~~~~~~----~-~~~-~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~ 161 (371)
.+.++.+++++.+.++++++|+......-. ...... - ... --|-.+.++ .. .+
T Consensus 27 ~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLD---------Hg--~~--------- 86 (307)
T PRK05835 27 FEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLD---------HG--TT--------- 86 (307)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECC---------CC--CC---------
Confidence 567888999999999999999976432100 000000 0 000 011112221 11 12
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCcc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~ 238 (371)
.+.+++|.++||+-|-+.+.| =++|...+...++++-.+.. |-. -|| ++...+
T Consensus 87 --~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vve~Ah~~-gv~VEaElG-~vgg~e 142 (307)
T PRK05835 87 --FESCEKAVKAGFTSVMIDASH--------------------HAFEENLELTSKVVKMAHNA-GVSVEAELG-RLMGIE 142 (307)
T ss_pred --HHHHHHHHHcCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEec-ccCCcc
Confidence 355677899999999998766 12566688889988888753 321 122 122111
Q ss_pred Cc-CcCC---CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC---CCCCCchhhHhHHHhcCCCeEeeCC--CCHH-
Q 017448 239 NY-MEAQ---DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD---KLDAPPYSLLPMRKAFDGTFIASGG--YNRD- 308 (371)
Q Consensus 239 ~~-~~~~---~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~---~~~~~~~~~~~ik~~~~~pVi~~Gg--it~~- 308 (371)
+. .... ...+.+++.+|++ +.|||+|.++-|+....++ .+.-+.+.++.|++.+++|++.=|+ +..+
T Consensus 143 d~~~~~~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~ 219 (307)
T PRK05835 143 DNISVDEKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDV 219 (307)
T ss_pred CCcccccccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHH
Confidence 11 0000 0123555666654 5699999999888765552 2233456788999999999776665 3343
Q ss_pred --------------------HHHHHHHcCCccEEEechHhh
Q 017448 309 --------------------DGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 309 --------------------~a~~~l~~g~~D~V~~gR~~l 329 (371)
+..++++.| +-=|=++..+.
T Consensus 220 ~~~~~~~g~~~~~~~g~~~e~~~kai~~G-I~KiNi~T~l~ 259 (307)
T PRK05835 220 RKSYLDAGGDLKGSKGVPFEFLQESVKGG-INKVNTDTDLR 259 (307)
T ss_pred hhhhhhhccccccccCCCHHHHHHHHHcC-ceEEEeChHHH
Confidence 788999998 44466665553
No 232
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=97.07 E-value=0.014 Score=56.31 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+++++.++.+.+.||..++|+.+. ..-.+.|++||++++ + +.+|+.++.
T Consensus 131 ~~~~~~~~~~~~~G~~~~KlKv~~---------------------------~~d~~~v~avr~~~~-~-~~l~vDaN~-- 179 (321)
T PRK15129 131 EQMANSASALWQAGAKLLKVKLDN---------------------------HLISERMVAIRSAVP-D-ATLIVDANE-- 179 (321)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCC---------------------------chHHHHHHHHHHhCC-C-CeEEEECCC--
Confidence 345666777778899999998532 002478999999995 3 445555432
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEE
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLH 268 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~ 268 (371)
..+.+++..+++.|++.++.||+
T Consensus 180 -----~w~~~~A~~~~~~l~~~~i~~iE 202 (321)
T PRK15129 180 -----SWRAEGLAARCQLLADLGVAMLE 202 (321)
T ss_pred -----CCCHHHHHHHHHHHHhcCceEEE
Confidence 34567788999999999999998
No 233
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.06 E-value=0.01 Score=55.62 Aligned_cols=106 Identities=12% Similarity=0.068 Sum_probs=70.7
Q ss_pred ccCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRF---ALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~---~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|.+-++.- ..|...+ ..+-++.+|+.+|++ +|+|-.+ +.++ +.+..+.|+|||-+
T Consensus 141 ~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~------------t~ee----a~~A~~~gaDyI~l 204 (265)
T TIGR00078 141 DNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVE------------SLEE----AEEAAEAGADIIML 204 (265)
T ss_pred cccCCCcccceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeC------------CHHH----HHHHHHcCCCEEEE
Confidence 45666665543 3454443 346688999999865 6766443 2333 33455789999987
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
... ....++++.+.++ +|+.+.||||.+++.++.+.| +|+|++|...-
T Consensus 205 d~~-----------~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~ 254 (265)
T TIGR00078 205 DNM-----------KPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH 254 (265)
T ss_pred CCC-----------CHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence 321 1234444444443 799999999999999999998 99999965443
No 234
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.05 E-value=0.008 Score=55.67 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCc-cC--
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPH-AN-- 239 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~-~~-- 239 (371)
+.++...++|+|.|=|...- -+......+.++.+.+..|++ .+++..... +.
T Consensus 88 e~v~~~l~aGa~rVvIGS~a-----------------------v~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~ 144 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWL-----------------------FTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRW 144 (253)
T ss_pred HHHHHHHHcCCCEEEECcHH-----------------------HhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcE
Confidence 66778889999999985321 011111256788888889866 355544310 11
Q ss_pred c-CcCCCCC-hHHHHH-HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHH--
Q 017448 240 Y-MEAQDSN-PEALGL-YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKA-- 313 (371)
Q Consensus 240 ~-~~~~~~~-~~e~~~-~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~-- 313 (371)
. .-.+|.. +.-+.. ++++.+++. +..+-++.-..... -..++...++.+.+.+++|||+.||+ +.++..++
T Consensus 145 ~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGt--l~G~dlel~~~l~~~~~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 145 IVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGL--CKGIDEELVSKLGEWSPIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCc--cccCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH
Confidence 1 0011111 111233 678888877 77665544222111 23456788899999999999999999 89999877
Q ss_pred HHcCCccEEEechHhhh
Q 017448 314 VAENYTDLVAYGRSFLA 330 (371)
Q Consensus 314 l~~g~~D~V~~gR~~la 330 (371)
+..| ...+.+|+++..
T Consensus 222 ~~~g-~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKG-KVDLTIGSALDI 237 (253)
T ss_pred hcCC-CCcEEeeehHHH
Confidence 4445 444889988764
No 235
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.022 Score=50.60 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=54.2
Q ss_pred HhhcCccEEEEcCCCcccCC-CCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHH
Q 017448 259 LNKYQILYLHILEPRLFNAQ-DKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 259 l~~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~ 335 (371)
..++|+|+|.-+...|+... .+..++..+++.+.+ .+.+||+-|++ ||++|.++++-| ++.|.+|- +|-.|+.+
T Consensus 143 a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G-a~aVvVGs-AITRp~~I 218 (229)
T COG3010 143 AHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG-ADAVVVGS-AITRPEEI 218 (229)
T ss_pred HHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC-CeEEEECc-ccCCHHHH
Confidence 45689999976555454321 133445556677766 67899999999 999999999999 99999994 45667543
No 236
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.93 E-value=0.084 Score=51.10 Aligned_cols=199 Identities=14% Similarity=0.061 Sum_probs=114.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccC-CCCCCCCCCc---c---cCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTY-GFQPNGEAPI---S---CTSKGVTPGLGGGDWSPPRPLRTEEIPQIVN 161 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~-~~~~~~~~~~---~---ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~ 161 (371)
.+.++.++++..+.++++++|+...-..-.. .....-.... + |-.+.++ .. .+
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLD---------Hg--~~--------- 85 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQD---------HG--NS--------- 85 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECC---------CC--CC---------
Confidence 5678889999999999999999753211000 0000000000 1 1111111 11 12
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCcc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHA 238 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~ 238 (371)
.+..++|.++||+.|-|.+.+ .+ .++-.=+++...+...++++-.+.. |-. -|| ++...+
T Consensus 86 --~e~i~~Ai~~GFtSVMiDgS~-----------l~--~~~~~~p~eENI~~Tkevve~Ah~~-GvsVEaELG-~igg~e 148 (347)
T TIGR01521 86 --PATCQRAIQLGFTSVMMDGSL-----------RE--DAKTPADYDYNVRVTAEVVAFAHAV-GASVEGELG-CLGSLE 148 (347)
T ss_pred --HHHHHHHHHcCCCEEeecCcC-----------Cc--ccCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEEee-eccccc
Confidence 145778899999999998876 11 1222345788899999999988762 221 122 111111
Q ss_pred Cc-----Cc--C-------CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC---CC---CCchhhHhHHHhc-CC
Q 017448 239 NY-----ME--A-------QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK---LD---APPYSLLPMRKAF-DG 297 (371)
Q Consensus 239 ~~-----~~--~-------~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~---~~---~~~~~~~~ik~~~-~~ 297 (371)
.. .+ . ....+.+++.+|++ +.|||.|.++-|+....++. +. -+.+.+++|++.+ ++
T Consensus 149 ~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~v 225 (347)
T TIGR01521 149 TGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDT 225 (347)
T ss_pred ccccccccCcccccccchhhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCC
Confidence 00 00 0 00124455666654 55899999988886655532 11 3455688999999 69
Q ss_pred CeEeeCCC--C---------------------HHHHHHHHHcCCccEEEechHh
Q 017448 298 TFIASGGY--N---------------------RDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 298 pVi~~Ggi--t---------------------~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
|++.=|+= . .++..++++.|. -=|=++..+
T Consensus 226 PLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI-~KVNi~Tdl 278 (347)
T TIGR01521 226 HLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGV-RKVNIDTDL 278 (347)
T ss_pred CEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCC-eeEEeChHH
Confidence 97755553 3 478899999994 445555443
No 237
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.92 E-value=0.021 Score=53.64 Aligned_cols=109 Identities=16% Similarity=0.093 Sum_probs=70.7
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-+..- ..|...+. .+-++.+|+.+++. .|+|-.+ +.+++. +..+.|+|||-+
T Consensus 144 ~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~------------t~eea~----~A~~~gaD~I~l 207 (269)
T cd01568 144 DNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVE------------TLEEAE----EALEAGADIIML 207 (269)
T ss_pred ccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecC------------CHHHHH----HHHHcCCCEEEE
Confidence 56777666643 35555443 25688999998854 5665322 233322 234579999987
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhc----CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAF----DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~----~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..- ....++.+.+.+ ++|+.+.||||++.+.++.+.| +|+|++|....+-|
T Consensus 208 d~~-----------~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~ 262 (269)
T cd01568 208 DNM-----------SPEELKEAVKLLKGLPRVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP 262 (269)
T ss_pred CCC-----------CHHHHHHHHHHhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence 321 112333333333 6789999999999999999999 99999986655543
No 238
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.92 E-value=0.004 Score=64.02 Aligned_cols=88 Identities=10% Similarity=-0.026 Sum_probs=67.7
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhcCCCeEeeCCC-CH-----------HHHHHHHHcCCc
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASGGY-NR-----------DDGNKAVAENYT 319 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~-----------~~a~~~l~~g~~ 319 (371)
.++|+...+.|+|.||+..-+...... ....+.+.++.+.+.+.+|+.++||| |. ++++++|..| +
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G-a 348 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG-A 348 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC-C
Confidence 458899999999999886543221110 11223556778888889999999999 75 6799999999 9
Q ss_pred cEEEechHhhhCC------------cHHHHHHhC
Q 017448 320 DLVAYGRSFLANP------------DLPKRFELN 341 (371)
Q Consensus 320 D~V~~gR~~ladP------------~l~~k~~~g 341 (371)
|-|.++..++.|| +|++++.+.
T Consensus 349 dkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~ 382 (538)
T PLN02617 349 DKISIGSDAVYAAEEYIASGVKTGKTSIEQISRV 382 (538)
T ss_pred CEEEEChHHHhChhhhhccccccCHHHHHHHHHH
Confidence 9999999999975 999887775
No 239
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.91 E-value=0.015 Score=54.71 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHH
Q 017448 214 ALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 214 ~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik 292 (371)
+.+-++.+|+.+|+. .|+|-.+ +.++ +++..+.|+|||-+.. .....++++.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~------------tlee----a~~A~~~gaDyI~lD~-----------~~~e~l~~~~ 226 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE------------TEEQ----VREAVAAGADIIMFDN-----------RTPDEIREFV 226 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC------------CHHH----HHHHHHcCCCEEEECC-----------CCHHHHHHHH
Confidence 467788999999865 5666333 2333 2334568999998721 1124455666
Q ss_pred HhcC--CCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 293 KAFD--GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 293 ~~~~--~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+.++ +|+.+.|||+.+.+.++.+.| +|+|++|....
T Consensus 227 ~~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~ 264 (277)
T PRK08072 227 KLVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH 264 (277)
T ss_pred HhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence 6555 567799999999999999999 99999998665
No 240
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.90 E-value=0.018 Score=59.20 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc--cEEEEcCcc---
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER--VGIRLSPHA--- 238 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~--i~vrl~~~~--- 238 (371)
.+.|++..++|+|-|=|+..-=.=..+|+-.- +-+ . .++|+.+-+..|... ++|...-..
T Consensus 337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~--~~~---------~----p~~i~~~~~~fg~q~ivvsiD~k~~~~~~ 401 (538)
T PLN02617 337 LEVASEYFRSGADKISIGSDAVYAAEEYIASG--VKT---------G----KTSIEQISRVYGNQAVVVSIDPRRVYVKD 401 (538)
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChhhhhccc--ccc---------C----HHHHHHHHHHcCCceEEEEEecCcCcccC
Confidence 36688889999999999865311111222110 111 1 456666777778762 444432100
Q ss_pred ----------------C------cC--cCCC-CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH
Q 017448 239 ----------------N------YM--EAQD-SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK 293 (371)
Q Consensus 239 ----------------~------~~--~~~~-~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~ 293 (371)
. +. -.+| ..+.-+..++++++++.|+.-|-+..-..... ....+..+++.+++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt--~~G~d~~l~~~v~~ 479 (538)
T PLN02617 402 PSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQ--GKGFDIELVKLVSD 479 (538)
T ss_pred ccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccc--ccCcCHHHHHHHHh
Confidence 0 00 0011 11222357899999999988665543221111 23456788899999
Q ss_pred hcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 294 AFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 294 ~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
.+++|||+.||. ++++..+++.++.+|.+..|--|-
T Consensus 480 ~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh 516 (538)
T PLN02617 480 AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFH 516 (538)
T ss_pred hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeec
Confidence 999999999999 999999999988899988774443
No 241
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.90 E-value=0.015 Score=54.15 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccC--c
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHAN--Y 240 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~--~ 240 (371)
+.++++.++|+|-|-|...- ..| ..+-.++++.+-+..|++ .+++...-.+. .
T Consensus 95 e~i~~~l~~Ga~rViigT~A----------v~~-------------~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~ 151 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYV----------FRD-------------GQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYY 151 (262)
T ss_pred HHHHHHHHcCCCEEEEchHH----------HhC-------------CCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEE
Confidence 67778889999999985432 111 112245666666777766 34444431111 1
Q ss_pred -CcCCCCC-hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 241 -MEAQDSN-PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 241 -~~~~~~~-~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
.-.+|.. +.-...+++..+.+.|+..+-++.-..... -..++...++.+.+.+++|||+.||+ +.++..++.+.|
T Consensus 152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGt--l~G~d~el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g 229 (262)
T PLN02446 152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGK--RLGIDEELVALLGEHSPIPVTYAGGVRSLDDLERVKVAG 229 (262)
T ss_pred EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCc--ccCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcC
Confidence 0011211 122245677778888888765543222111 12456778899999999999999999 899999998875
Q ss_pred -CccEEEechHh
Q 017448 318 -YTDLVAYGRSF 328 (371)
Q Consensus 318 -~~D~V~~gR~~ 328 (371)
.+..|.+||++
T Consensus 230 ~g~~gvIvGkAl 241 (262)
T PLN02446 230 GGRVDVTVGSAL 241 (262)
T ss_pred CCCEEEEEEeeH
Confidence 47789999998
No 242
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=96.90 E-value=0.00017 Score=70.07 Aligned_cols=107 Identities=15% Similarity=0.159 Sum_probs=82.1
Q ss_pred CcCCCCCceeC-CeecCCceeeccCCCC-------CC-CCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCC
Q 017448 12 TIPLLTPYKMG-PFNLSHRIVLAPLTRN-------RS-YNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTP 81 (371)
Q Consensus 12 ~~~Lf~P~~ig-~~~l~NRiv~apm~~~-------~~-~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~ 81 (371)
+..|=..+++. +...+||++.+++++. .+ ..|.|++.++..|..|.- +.|+|.++++.|+|......+..
T Consensus 15 ~g~l~~~~r~~~g~~trnR~lk~~~~e~~~~~~~y~~qr~g~Pt~~iI~~~~~~g~g~~G~i~t~nv~vdp~~~~~~~~~ 94 (400)
T KOG0134|consen 15 MGNLGLHHRFVNGPETRNRFLKAALTEIQSNAAEYYPQRHGLPTDFLINEYTKWGNGSFGYINTPNVWVDPQNEEWAGNV 94 (400)
T ss_pred cccccccccccccHHHhhhhhcccccccccccCcCchhhcCCCCceEEEeeccccCCCCceecCCceeecccccccCCce
Confidence 34555667775 6889999999987443 22 369999999999999997 78999999999999999888877
Q ss_pred CCCChhhhhchHHHHHHHH--HcCCeeEEccccCCcccc
Q 017448 82 GIWTEEQVEAWKPIVDAVH--EKGGIFFCQIWHCGRVST 118 (371)
Q Consensus 82 ~~~~~~~~~~~~~l~~~ih--~~g~~~~~QL~h~G~~~~ 118 (371)
.++.+..-..|+++-..-+ +.+...++|++|.|+++.
T Consensus 95 ~~~~e~~~~~~~ql~~~~~~~~~~~~~~~~~~h~~~q~~ 133 (400)
T KOG0134|consen 95 IAFHENDSFEFRQLWHLGAKLQDGALAVQQLSHAGRQTP 133 (400)
T ss_pred EEEecCCchHHHHHHHhhhhhhhhhhhHHhccCCccccc
Confidence 6666544444444444333 567899999999999953
No 243
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.90 E-value=0.013 Score=53.74 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=79.9
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~ 245 (371)
..+.+.++|.|-|-+|+-.+ ...+.++++++|+. | ..++|-+++.
T Consensus 80 ~i~~~~~~Gad~itvH~ea~-------------------------~~~~~~~l~~ik~~-G-~~~gval~p~-------- 124 (228)
T PTZ00170 80 WVDDFAKAGASQFTFHIEAT-------------------------EDDPKAVARKIREA-G-MKVGVAIKPK-------- 124 (228)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------------------chHHHHHHHHHHHC-C-CeEEEEECCC--------
Confidence 33555678999999997651 01146777777774 3 2578888873
Q ss_pred CChHHHHHHHHHHHhhcCccEE---EEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccE
Q 017448 246 SNPEALGLYMAKALNKYQILYL---HILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDL 321 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l---~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~ 321 (371)
.+.+...+++ ....+|++ .++.+..++.. . .....-++.+++..+ ..+.+.||++.+....+++.| +|.
T Consensus 125 -t~~e~l~~~l---~~~~vD~Vl~m~v~pG~~gq~~-~-~~~~~ki~~~~~~~~~~~I~VdGGI~~~ti~~~~~aG-ad~ 197 (228)
T PTZ00170 125 -TPVEVLFPLI---DTDLVDMVLVMTVEPGFGGQSF-M-HDMMPKVRELRKRYPHLNIQVDGGINLETIDIAADAG-ANV 197 (228)
T ss_pred -CCHHHHHHHH---ccchhhhHHhhhcccCCCCcEe-c-HHHHHHHHHHHHhcccCeEEECCCCCHHHHHHHHHcC-CCE
Confidence 2444443332 11225554 33222211111 0 001223455666543 457888999999999999998 999
Q ss_pred EEechHhhhCCcHHHH
Q 017448 322 VAYGRSFLANPDLPKR 337 (371)
Q Consensus 322 V~~gR~~ladP~l~~k 337 (371)
+.+||+++..+++.+.
T Consensus 198 iVvGsaI~~a~d~~~~ 213 (228)
T PTZ00170 198 IVAGSSIFKAKDRKQA 213 (228)
T ss_pred EEEchHHhCCCCHHHH
Confidence 9999999988875443
No 244
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=96.89 E-value=0.06 Score=52.05 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=123.4
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCC--CCCCCC--CC---------------cccCCCCCCCCCCCCCCCCCC
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYG--FQPNGE--AP---------------ISCTSKGVTPGLGGGDWSPPR 149 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~--~~~~~~--~~---------------~~ps~~~~~~~~~g~~~~~~~ 149 (371)
.+..+.+++++.+..+++++|++.....-... +...++ .. -+.-++.++ .+ +
T Consensus 31 ~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValH-------LD--H 101 (350)
T PRK09197 31 TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILH-------TD--H 101 (350)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEE-------CC--C
Confidence 46778899999999999999997643221000 000000 00 000011111 11 2
Q ss_pred CCC--hHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 017448 150 PLR--TEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA 227 (371)
Q Consensus 150 ~mt--~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~ 227 (371)
..+ .+.|.+.++.=.+..+++.++||+-|-|.+.| =++|...++..+|++..+. .|-
T Consensus 102 g~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~--------------------lpfEeNI~~TkevVe~Ah~-~Gv 160 (350)
T PRK09197 102 CAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE--------------------EPLEENIEICSKYLERMAK-AGM 160 (350)
T ss_pred CCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC--------------------CCHHHHHHHHHHHHHHHHH-cCC
Confidence 233 55677777765566777778889999888765 2467889999999998874 332
Q ss_pred c---ccEEEEcCccCcC--cCC----CCChHHHHHHHHHHHhh-cCccEEEEcCCCcccCCC--CCCCCchhhHhHHHhc
Q 017448 228 E---RVGIRLSPHANYM--EAQ----DSNPEALGLYMAKALNK-YQILYLHILEPRLFNAQD--KLDAPPYSLLPMRKAF 295 (371)
Q Consensus 228 ~---~i~vrl~~~~~~~--~~~----~~~~~e~~~~la~~l~~-~Gvd~l~v~~~~~~~~~~--~~~~~~~~~~~ik~~~ 295 (371)
. -|| ++...++.. ... ...+.+++.+|+++..- -|+|.|.++-++....++ .+.-+.+.++.|++.+
T Consensus 161 sVEaELG-~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v 239 (350)
T PRK09197 161 TLEIELG-VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYV 239 (350)
T ss_pred EEEEEEe-ccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHH
Confidence 1 132 122212110 000 02356677777664421 233999999888766653 1223456788999998
Q ss_pred ---------CCCeEeeCC--CCHHHHHHHHHcCCccEEEechHh
Q 017448 296 ---------DGTFIASGG--YNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 296 ---------~~pVi~~Gg--it~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
++|++.=|+ ++.++..++++.| +-=|=++..+
T Consensus 240 ~~~~~~~~~~vPLVLHGgSGipde~i~~ai~~G-I~KINi~T~l 282 (350)
T PRK09197 240 SKKFGLPAKPFDFVFHGGSGSTLEEIREAVSYG-VVKMNIDTDT 282 (350)
T ss_pred HHhhCCCCCCCCEEEeCCCCCCHHHHHHHHHCC-CeeEEeCcHH
Confidence 799776554 5789999999999 4445555544
No 245
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.89 E-value=0.022 Score=51.96 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=54.4
Q ss_pred HHhhcCccEEEEcCCC-cccCCC----CCCCCchhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 258 ALNKYQILYLHILEPR-LFNAQD----KLDAPPYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~-~~~~~~----~~~~~~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
.+.+.+.++|.+.... .+.... .+.......+.+|+.. ++||+..|++ +++++..+++.| +|.|.+|++++.
T Consensus 129 ~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~ 207 (223)
T PRK04302 129 AAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVK 207 (223)
T ss_pred HHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhC
Confidence 4566788888764322 111000 0111122345577654 6899999999 889999998887 999999999999
Q ss_pred CCcHHHHHH
Q 017448 331 NPDLPKRFE 339 (371)
Q Consensus 331 dP~l~~k~~ 339 (371)
-+++.+.++
T Consensus 208 ~~~~~~~~~ 216 (223)
T PRK04302 208 AKDPEAALR 216 (223)
T ss_pred CcCHHHHHH
Confidence 888866554
No 246
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.88 E-value=0.029 Score=50.74 Aligned_cols=52 Identities=13% Similarity=0.259 Sum_probs=41.9
Q ss_pred hHhHHHhcCC-CeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 288 LLPMRKAFDG-TFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 288 ~~~ik~~~~~-pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
.+.+++..+. +++.+||| +++.|.++.+.| +|.|..|--+-.||+-..++.+
T Consensus 182 ~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 182 VEMVSRVLSDTPLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred HHHHHHhhccceEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence 3445555543 89999999 899999999998 9999999999999976665544
No 247
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=96.88 E-value=0.012 Score=56.88 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=70.3
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHH
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
.||..++|+.|.+ + ...-.+.|++||++++ + +.+|+..+. ..+.+++
T Consensus 127 ~Gf~~~KvKvG~~--------------------~----~~~d~~~i~~vr~~~~-~-~~l~vDaN~-------~w~~~~A 173 (322)
T PRK05105 127 PGEKVAKVKVGLY--------------------E----AVRDGMLVNLLLEAIP-D-LKLRLDANR-------GWTLEKA 173 (322)
T ss_pred CCCCEEEEEECCC--------------------C----HHHHHHHHHHHHHhCC-C-CeEEEECCC-------CCCHHHH
Confidence 7999999987641 1 2234788999999884 4 445555421 3467789
Q ss_pred HHHHHHHhh---cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEE
Q 017448 253 LYMAKALNK---YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 253 ~~la~~l~~---~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~ 323 (371)
..+++.|++ .++.||+ .|. ........+++.+.+||.+...+ +++ ....+ .+.+|.|.
T Consensus 174 ~~~~~~l~~~~~~~i~~iE--qP~---------~~~~~~~~l~~~~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ 235 (322)
T PRK05105 174 QQFAKYVPPDYRHRIAFLE--EPC---------KTPDDSRAFARATGIAIAWDESLREPD-FQFEA-EPGVRAIV 235 (322)
T ss_pred HHHHHHhhhhcCCCccEEE--CCC---------CCHHHHHHHHHhCCCCEEECCCCCchh-hhhhh-cCCCCEEE
Confidence 999999998 8899998 431 11234566888888888877776 654 33333 44577664
No 248
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=96.87 E-value=0.0093 Score=69.35 Aligned_cols=102 Identities=11% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
++++.|+.+.+.||..++|..|.+ .+ ...-.++|++||+++|++ +.+|+..+.
T Consensus 1093 ~~~~~a~~~~~~Gf~~~KlKvG~~-------------------~~----~~~D~~~i~alRe~~G~~-~~LrlDAN~--- 1145 (1655)
T PLN02980 1093 EVAYVARKLVEEGFSAIKLKVGRR-------------------VS----PIQDAAVIQEVRKAVGYQ-IELRADANR--- 1145 (1655)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCC-------------------CC----HHHHHHHHHHHHHHcCCC-CeEEEECCC---
Confidence 355667777789999999987641 01 123478999999999975 344554421
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY 305 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi 305 (371)
..+.+++.++++.|++.++.||+ +|- .....+..+++.+++||.+...+
T Consensus 1146 ----~ws~~~A~~~~~~L~~~~i~~iE--qPl---------~~~~~l~~l~~~~~iPIA~DEs~ 1194 (1655)
T PLN02980 1146 ----NWTYEEAIEFGSLVKSCNLKYIE--EPV---------QDEDDLIKFCEETGLPVALDETI 1194 (1655)
T ss_pred ----CCCHHHHHHHHHHHhhcCCCEEE--CCC---------CCHHHHHHHHHhCCCCEEeCCCc
Confidence 34678899999999999999998 442 12234555666666776665554
No 249
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.81 E-value=0.028 Score=51.63 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=84.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHANYM 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~~~ 241 (371)
.+.++++.++|+|-|-|...- ++ . .+.++.+-+.+|+. .+++.++-.....
T Consensus 85 ~e~~~~~l~~Ga~kvvigt~a----------------------~~-~----p~~~~~~~~~~g~~~ivvslD~~~~~~v~ 137 (232)
T PRK13586 85 IEKAKRLLSLDVNALVFSTIV----------------------FT-N----FNLFHDIVREIGSNRVLVSIDYDNTKRVL 137 (232)
T ss_pred HHHHHHHHHCCCCEEEECchh----------------------hC-C----HHHHHHHHHHhCCCCEEEEEEcCCCCEEE
Confidence 356677778999998764321 01 1 35667777778755 3556552111111
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D 320 (371)
-.+|..+.-...++++.+++.|+.-+-++.=..... ...++...++.+++. ..|+++.||+ +.++..++.+.| +|
T Consensus 138 ~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt--~~G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~ 213 (232)
T PRK13586 138 IRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT--TKGIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FD 213 (232)
T ss_pred ccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc--CcCcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CC
Confidence 011211122345789999999986554433221111 123456677777765 5679999999 899999988876 99
Q ss_pred EEEechHhhh
Q 017448 321 LVAYGRSFLA 330 (371)
Q Consensus 321 ~V~~gR~~la 330 (371)
.|.+|+++..
T Consensus 214 gvivg~Aly~ 223 (232)
T PRK13586 214 YIIVGMAFYL 223 (232)
T ss_pred EEEEehhhhc
Confidence 9999999863
No 250
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.031 Score=50.45 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHc-CCCEE--ecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc
Q 017448 161 NDFRLAGRNAIKA-GFDGV--EIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH 237 (371)
Q Consensus 161 ~~f~~aA~~a~~a-G~DgV--ei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~ 237 (371)
++-+..|+.|.|+ +-|-| |+++.+-||+ | | ..|.+++.+.-+.+.++- =++
T Consensus 83 eEAv~tArlARE~~~t~wiKlEVi~d~~tLl-----P------D------------~~etl~Aae~Lv~eGF~V---lPY 136 (262)
T COG2022 83 EEAVRTARLAREALGTNWIKLEVIGDEKTLL-----P------D------------PIETLKAAEQLVKEGFVV---LPY 136 (262)
T ss_pred HHHHHHHHHHHHHccCCeEEEEEecCCcccC-----C------C------------hHHHHHHHHHHHhCCCEE---eec
Confidence 3457888888886 44655 6665553332 1 2 478899988888764321 132
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCC-CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHH
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVA 315 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~ 315 (371)
..+|+ .+|++|++.|+..+- |....-.. -+..+.+.++.|++..++|||+--|| ++.+|..+++
T Consensus 137 ------~~dD~-----v~arrLee~GcaavM---Pl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME 202 (262)
T COG2022 137 ------TTDDP-----VLARRLEEAGCAAVM---PLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME 202 (262)
T ss_pred ------cCCCH-----HHHHHHHhcCceEec---cccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh
Confidence 11233 489999999977663 22111110 12345677899999999999999999 9999999999
Q ss_pred cCCccEEEechHhh--hCCc
Q 017448 316 ENYTDLVAYGRSFL--ANPD 333 (371)
Q Consensus 316 ~g~~D~V~~gR~~l--adP~ 333 (371)
-| ||.|.+-.+.- .||=
T Consensus 203 lG-~DaVL~NTAiA~A~DPv 221 (262)
T COG2022 203 LG-ADAVLLNTAIARAKDPV 221 (262)
T ss_pred cc-cceeehhhHhhccCChH
Confidence 99 99999876654 4553
No 251
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.80 E-value=0.005 Score=56.19 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=63.4
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHH--cCCccEEEechHhh
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVA--ENYTDLVAYGRSFL 329 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~--~g~~D~V~~gR~~l 329 (371)
.++++.+.+.|+|++|+..-.... ....+...++.+.+. .|+...||+ |.+++++++. ++ +|-|.+|..++
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~~---~~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~-a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRIV---GLGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEF-ASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEccccc---CCcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhcc-ceEEeecChhh
Confidence 357888889999999987643221 233456677777776 489999999 8999999865 46 99999999999
Q ss_pred hCCcHHHHHH
Q 017448 330 ANPDLPKRFE 339 (371)
Q Consensus 330 adP~l~~k~~ 339 (371)
.||++++++.
T Consensus 113 ~~p~~l~~~~ 122 (221)
T TIGR00734 113 DITELLRECY 122 (221)
T ss_pred CCHHHHHHhh
Confidence 9999999875
No 252
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.078 Score=49.69 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=112.1
Q ss_pred hhhchHHHHHHHHHcCCeeEEccccCCccccCCCC--C---CCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 017448 88 QVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ--P---NGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVND 162 (371)
Q Consensus 88 ~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~--~---~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~ 162 (371)
..+.++.+.+++.+.++++++|.+..++.=..... . ...-.-.+-++-++- +... +
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHl-------DHg~--~---------- 87 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHL-------DHGA--S---------- 87 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEEC-------CCCC--C----------
Confidence 46788999999999999999999876543211000 0 000000001111110 1111 1
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEc---CccC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLS---PHAN 239 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~---~~~~ 239 (371)
.+.+.+|.++||.-|-|.+.|- ++|...++..|+|+...+ .|- .|-.-|. ..++
T Consensus 88 -~~~~~~ai~~GFsSvMiDgS~~--------------------~~eENi~~tkevv~~ah~-~gv-sVEaElG~~GG~Ed 144 (286)
T COG0191 88 -FEDCKQAIRAGFSSVMIDGSHL--------------------PFEENIAITKEVVEFAHA-YGV-SVEAELGTLGGEED 144 (286)
T ss_pred -HHHHHHHHhcCCceEEecCCcC--------------------CHHHHHHHHHHHHHHHHH-cCC-cEEEEeccccCccC
Confidence 3667788999999999988772 267779999999988765 332 2222222 1111
Q ss_pred -cCcCCC---CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhcCCCeEeeCC--CCHHHHH
Q 017448 240 -YMEAQD---SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAFDGTFIASGG--YNRDDGN 311 (371)
Q Consensus 240 -~~~~~~---~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~~~pVi~~Gg--it~~~a~ 311 (371)
...... -...+++.++ .+..|+|.|.+.-|+....+++ +.-+...++.|++.+++|++.=|+ +..++..
T Consensus 145 g~~~~~~~~~~tdp~ea~~f---v~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~~PlVlHGgSGip~~eI~ 221 (286)
T COG0191 145 GVVLYTDPADLTDPEEALEF---VERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVSLPLVLHGGSGIPDEEIR 221 (286)
T ss_pred CcccccchhhhCCHHHHHHH---HhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHH
Confidence 111111 1123333333 4566799999888877666632 223345788999999999665554 6889999
Q ss_pred HHHHcCCcc
Q 017448 312 KAVAENYTD 320 (371)
Q Consensus 312 ~~l~~g~~D 320 (371)
++|+-|.+-
T Consensus 222 ~aI~~GV~K 230 (286)
T COG0191 222 EAIKLGVAK 230 (286)
T ss_pred HHHHhCceE
Confidence 999999543
No 253
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.78 E-value=0.012 Score=54.07 Aligned_cols=142 Identities=18% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHANYM 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~~~ 241 (371)
...++.|.+.|+|+|++..-.+++.+. +..-..+-+.+|++.+... ++.+-.-+.. .
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-------------------~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~--~ 137 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-------------------NEDEVIEEIAAVVEECHKYGLKVILEPYLRG--E 137 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-------------------HHHHHHHHHHHHHHHHHTSEEEEEEEECECH--H
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-------------------cHHHHHHHHHHHHHHHhcCCcEEEEEEecCc--h
Confidence 677889999999999987665543331 1344566677777777432 2222211110 0
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC----eEeeCCCC-------HHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT----FIASGGYN-------RDDG 310 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p----Vi~~Ggit-------~~~a 310 (371)
........+.....++...+.|+|||-.+.+.. .. ........++++-+..++| |.+.||++ .+++
T Consensus 138 ~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~~-~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a 214 (236)
T PF01791_consen 138 EVADEKKPDLIARAARIAAELGADFVKTSTGKP--VG-ATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDA 214 (236)
T ss_dssp HBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--SC-SHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHH
T ss_pred hhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--cc-ccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHH
Confidence 011111334556778888899999998876621 10 0001112333444445688 99999982 5677
Q ss_pred HHHHHcCCc--cEEEechHhhh
Q 017448 311 NKAVAENYT--DLVAYGRSFLA 330 (371)
Q Consensus 311 ~~~l~~g~~--D~V~~gR~~la 330 (371)
.++++.| + -+++.||..+.
T Consensus 215 ~~~i~aG-a~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 215 LEFIEAG-ADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHHTT-HSEEEEEEHHHHHT
T ss_pred HHHHHcC-ChhHHHHHHHHHHc
Confidence 8888998 8 66667776653
No 254
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=96.74 E-value=0.0094 Score=43.52 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc
Q 017448 217 IVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF 295 (371)
Q Consensus 217 iv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~ 295 (371)
.|++||+++|++ .|.+..|. ..+.++++.+++.|++ +.|++ +| -+..+....+.+++.+
T Consensus 1 ri~avr~~~g~~~~l~vDan~---------~~~~~~a~~~~~~l~~--~~~iE--eP-------~~~~d~~~~~~l~~~~ 60 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQ---------AWTLEEAIRLARALED--YEWIE--EP-------LPPDDLDGLAELRQQT 60 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TT---------BBSHHHHHHHHHHHGG--GSEEE--SS-------SSTTSHHHHHHHHHHC
T ss_pred CHHHHHHhhCCCCeEEEECCC---------CCCHHHHHHHHHHcCh--hheee--cC-------CCCCCHHHHHHHHHhC
Confidence 478999999986 46665554 3367889999999998 57777 44 2234567788999999
Q ss_pred CCCeEe
Q 017448 296 DGTFIA 301 (371)
Q Consensus 296 ~~pVi~ 301 (371)
++||.+
T Consensus 61 ~~pia~ 66 (67)
T PF01188_consen 61 SVPIAA 66 (67)
T ss_dssp SSEEEE
T ss_pred CCCEEe
Confidence 999875
No 255
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.69 E-value=0.11 Score=48.45 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCc--------hhhh--hHHHHHHHHHHHHHhCCccc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGS--------LENR--CRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs--------~enR--~r~~~eiv~avR~~vg~~~i 230 (371)
+.+.+..+.+.++|+|.+||-. |.++---| |-- |.+. .+-.+|+++.+|+.-..-|+
T Consensus 31 e~s~e~i~~L~~~GaD~iELGv-----------PfSDPvAD--GP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pi 97 (265)
T COG0159 31 ETSLEIIKTLVEAGADILELGV-----------PFSDPVAD--GPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPI 97 (265)
T ss_pred HHHHHHHHHHHhCCCCEEEecC-----------CCCCcCcc--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCE
Confidence 4567888888999999999843 44554444 322 1211 34578999999976332243
Q ss_pred EE--EEcCc-----cCc---------CcC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC--------C--C----
Q 017448 231 GI--RLSPH-----ANY---------MEA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFNA--------Q--D---- 279 (371)
Q Consensus 231 ~v--rl~~~-----~~~---------~~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~--------~--~---- 279 (371)
.+ =.|+- +.| ++. .-+.+.|+...+.+..++.|+++|-+..++.... . .
T Consensus 98 vlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~v 177 (265)
T COG0159 98 VLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYV 177 (265)
T ss_pred EEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 32 12220 000 000 1245777778888888999999998876653210 0 0
Q ss_pred -----CCCC------CchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 280 -----KLDA------PPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 280 -----~~~~------~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
.+.. ....++.+|+..++||+.+=|| ++++++++.+. +|+|.+|.+++
T Consensus 178 s~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 178 SRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred ecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 1111 1245678999999998887788 89999999987 99999999865
No 256
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.65 E-value=0.2 Score=47.59 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=88.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEc---CccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLS---PHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~---~~~~~ 240 (371)
.+..++|.++||+.|-|.+.+ -+++...+...++++-.+.. |- .|-.-|. ..++.
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~--------------------l~~eeNi~~T~~vv~~ah~~-gv-~VEaElG~i~g~ed~ 143 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSA--------------------LPFEENIAITREVVEYAHAY-GV-SVEAELGHIGGKEDG 143 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TT--------------------S-HHHHHHHHHHHHHHHHHT-T--EEEEEESBSSSSCTT
T ss_pred HHHHHHHHHhCcccccccCCc--------------------CCHHHHHHHHHHHHHhhhhh-CC-EEEEEeeeeeccCCC
Confidence 355677778899999887764 24677899999999998873 21 1222222 11111
Q ss_pred -Cc----CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC---CCCCchhhHhHHHhc-CCCeEeeCC--CCHHH
Q 017448 241 -ME----AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK---LDAPPYSLLPMRKAF-DGTFIASGG--YNRDD 309 (371)
Q Consensus 241 -~~----~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~---~~~~~~~~~~ik~~~-~~pVi~~Gg--it~~~ 309 (371)
.. .......+++.+|+ ++.|||+|.++-|+....++. +.-+.+.+++|++.+ ++|++.=|+ +..++
T Consensus 144 ~~~~~~~~~~~TdP~~a~~Fv---~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~ 220 (287)
T PF01116_consen 144 IESEEETESLYTDPEEAKEFV---EETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQ 220 (287)
T ss_dssp CSSSTT-TTCSSSHHHHHHHH---HHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHH
T ss_pred ccccccccccccCHHHHHHHH---HHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHH
Confidence 10 01112455566664 466999999999887665532 222456789999999 999776665 57789
Q ss_pred HHHHHHcCCccEEEechHhh
Q 017448 310 GNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 310 a~~~l~~g~~D~V~~gR~~l 329 (371)
..++++.| +-=|=++..+.
T Consensus 221 ~~~ai~~G-i~KiNi~T~~~ 239 (287)
T PF01116_consen 221 IRKAIKNG-ISKINIGTELR 239 (287)
T ss_dssp HHHHHHTT-EEEEEESHHHH
T ss_pred HHHHHHcC-ceEEEEehHHH
Confidence 99999999 55566766554
No 257
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=96.64 E-value=0.018 Score=55.93 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEE
Q 017448 157 PQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIR 233 (371)
Q Consensus 157 ~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vr 233 (371)
+.+|+.|++ ++.+-|.|-+.|.-+- |..|=+..-++++++. |.. .|++.
T Consensus 97 DDvVe~Fv~---ka~~nGidvfRiFDAl------------------------ND~RNl~~ai~a~kk~-G~h~q~~i~YT 148 (472)
T COG5016 97 DDVVEKFVE---KAAENGIDVFRIFDAL------------------------NDVRNLKTAIKAAKKH-GAHVQGTISYT 148 (472)
T ss_pred hHHHHHHHH---HHHhcCCcEEEechhc------------------------cchhHHHHHHHHHHhc-CceeEEEEEec
Confidence 356777765 5678999999975442 3455556666666654 434 46777
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe----eCCCCHHH
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA----SGGYNRDD 309 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~----~Ggit~~~ 309 (371)
+||- -+.+.+.+++++|.+.|+|.|.+-.-. ... .+.....+.+.+|+.+++||.. +.|++...
T Consensus 149 ~sPv---------Ht~e~yv~~akel~~~g~DSIciKDma--Gll-tP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ 216 (472)
T COG5016 149 TSPV---------HTLEYYVELAKELLEMGVDSICIKDMA--GLL-TPYEAYELVKAIKKELPVPVELHTHATSGMAEMT 216 (472)
T ss_pred cCCc---------ccHHHHHHHHHHHHHcCCCEEEeeccc--ccC-ChHHHHHHHHHHHHhcCCeeEEecccccchHHHH
Confidence 7772 368889999999999999999885432 111 2223456788999999999753 34455566
Q ss_pred HHHHHHcCCccEEEe
Q 017448 310 GNKAVAENYTDLVAY 324 (371)
Q Consensus 310 a~~~l~~g~~D~V~~ 324 (371)
..++++.| +|+|=-
T Consensus 217 ylkAvEAG-vD~iDT 230 (472)
T COG5016 217 YLKAVEAG-VDGIDT 230 (472)
T ss_pred HHHHHHhC-cchhhh
Confidence 67889998 887743
No 258
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.044 Score=49.45 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
.+.+..+...++|.|-+-+..--| +|. +..-|--++++++|+.. +.++-|=|=.
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDg----hFV----------------PNiTfGp~~v~~l~~~t-~~p~DvHLMV----- 70 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDG----HFV----------------PNITFGPPVVKALRKIT-DLPLDVHLMV----- 70 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCC----CcC----------------CCcccCHHHHHHHhhcC-CCceEEEEec-----
Confidence 467778888899999887655443 343 12445589999999943 2255443322
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcc--------------------cCC-----------------------
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLF--------------------NAQ----------------------- 278 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~--------------------~~~----------------------- 278 (371)
.++ ..+++.+.++|+|+|.+|.-... .+.
T Consensus 71 ----~~p----~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP 142 (220)
T COG0036 71 ----ENP----DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP 142 (220)
T ss_pred ----CCH----HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence 112 24666777888888877631100 000
Q ss_pred -CCCCCCc-hh---hHhHHHhcCC--C--eEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 279 -DKLDAPP-YS---LLPMRKAFDG--T--FIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 279 -~~~~~~~-~~---~~~ik~~~~~--p--Vi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
..+..+. .. ++++|+..+. + +-+-||++.+.+.++.+.| +|.+.+|++++.++|+..+++.
T Consensus 143 GfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 143 GFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINLETIKQLAAAG-ADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred CCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence 0001111 12 2345554442 2 5577899999999999999 9999999999999998777654
No 259
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.56 E-value=0.032 Score=54.78 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCC--hHHHHHHHHHHHhhcC---ccEEEEcCCCcccCCCCCC--
Q 017448 211 CRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSN--PEALGLYMAKALNKYQ---ILYLHILEPRLFNAQDKLD-- 282 (371)
Q Consensus 211 ~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~--~~e~~~~la~~l~~~G---vd~l~v~~~~~~~~~~~~~-- 282 (371)
.+...+.|+++| ++|++ .|.|..|.. ++... +.++++++++.|++.+ +.|++ +|- +..
T Consensus 176 ~~~~~~~v~avr-~~G~~~~l~vDaN~~-----w~~~~~~~~~~A~~~~~~Le~~~~~~~~~iE--qP~------~~~d~ 241 (369)
T cd03314 176 VKWLSDRIRKLG-RPGYHPILHIDVYGT-----IGQAFDPDPDRAADYLATLEEAAAPFPLRIE--GPM------DAGSR 241 (369)
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEEcCCc-----cccccCCCHHHHHHHHHHHHHhcCCCcEEEe--cCC------CCCcc
Confidence 344568899999 88876 465554420 00012 5677999999999752 44554 431 111
Q ss_pred -CCchhhHhHHHh-----cCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 283 -APPYSLLPMRKA-----FDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 283 -~~~~~~~~ik~~-----~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
.+....+.+++. +++||.+...+ +++++.++++.+.||+|.+
T Consensus 242 ~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~ 290 (369)
T cd03314 242 EAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQI 290 (369)
T ss_pred hhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEe
Confidence 124567778888 48999888887 8999999999999999986
No 260
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.50 E-value=0.27 Score=45.71 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=114.7
Q ss_pred cCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHc-CCeeEEccccCCccccCCCCCCCCCCcccCCCCCC
Q 017448 59 NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEK-GGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVT 137 (371)
Q Consensus 59 g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~-g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~ 137 (371)
|+--||.|+..=.|- .. -...+.+..+.+++.++++. +.++.+|+.-
T Consensus 41 GvD~viveN~~d~P~----~~---~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~------------------------- 88 (257)
T TIGR00259 41 GVDAVMFENFFDAPF----LK---EVDPETVAAMAVIAGQLKSDVSIPLGINVLR------------------------- 88 (257)
T ss_pred CCCEEEEecCCCCCC----cC---CCCHHHHHHHHHHHHHHHHhcCCCeeeeeec-------------------------
Confidence 444477786532222 11 14567788888888888665 3467777641
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHH
Q 017448 138 PGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEI 217 (371)
Q Consensus 138 ~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~ei 217 (371)
..+ ..+-..|..+|+|.|.++.-+|-. -+| -|-++-++.-++
T Consensus 89 --------nd~---------------~aal~iA~a~ga~FIRv~~~~g~~-----------~~d--~G~~~~~a~e~~-- 130 (257)
T TIGR00259 89 --------NDA---------------VAALAIAMAVGAKFIRVNVLTGVY-----------ASD--QGIIEGNAGELI-- 130 (257)
T ss_pred --------CCC---------------HHHHHHHHHhCCCEEEEccEeeeE-----------ecc--cccccccHHHHH--
Confidence 112 355677888999999987555421 223 244444443222
Q ss_pred HHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcC-ccEEEEcCCCcccCCCCCCCCchhhHhHHHhc
Q 017448 218 VEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQ-ILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF 295 (371)
Q Consensus 218 v~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~G-vd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~ 295 (371)
..|+.++.+ .|.-.+...... . ..+.+.++ .++..+..+ .|.|-++....+ ....+..++.+|+..
T Consensus 131 --r~r~~l~~~v~i~adV~~kh~~-~-l~~~~~~e---~a~~~~~~~~aDavivtG~~TG-----~~~d~~~l~~vr~~~ 198 (257)
T TIGR00259 131 --RYKKLLGSEVKILADIVVKHAV-H-LGNRDLES---IALDTVERGLADAVILSGKTTG-----TEVDLELLKLAKETV 198 (257)
T ss_pred --HHHHHcCCCcEEEeceeecccC-c-CCCCCHHH---HHHHHHHhcCCCEEEECcCCCC-----CCCCHHHHHHHHhcc
Confidence 345666644 343333321111 1 11234443 444444444 899988765432 334677888898865
Q ss_pred -CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 296 -DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 296 -~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
+.||+.+||+|++...++++. +|.|-+|..+=.
T Consensus 199 ~~~PvllggGvt~eNv~e~l~~--adGviVgS~~K~ 232 (257)
T TIGR00259 199 KDTPVLAGSGVNLENVEELLSI--ADGVIVATTIKK 232 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHhh--CCEEEECCCccc
Confidence 589999999999999999985 999999998753
No 261
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.49 E-value=0.011 Score=52.55 Aligned_cols=65 Identities=8% Similarity=0.108 Sum_probs=51.3
Q ss_pred HHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 258 ALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
...+.|+||+-+ -++ ....-..+++.++..+ ++|++..||+|++++.+.++.| ++.|+++.+++.
T Consensus 120 ~A~~~Gadyv~~-Fpt------~~~~G~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~ 185 (187)
T PRK07455 120 TAWQAGASCVKV-FPV------QAVGGADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP 185 (187)
T ss_pred HHHHCCCCEEEE-CcC------CcccCHHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence 344689999987 221 1112246788899888 5999999999999999999998 999999988753
No 262
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=96.49 E-value=0.069 Score=48.37 Aligned_cols=139 Identities=20% Similarity=0.179 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEE
Q 017448 155 EIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIR 233 (371)
Q Consensus 155 eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vr 233 (371)
||-..+..+++. +.++|+|.|-+|+.-| ...+...++.+++. |.. .+-+.
T Consensus 60 Dig~t~~~~~~~---~~~~gad~vTvh~~~g-------------------------~~~l~~~~~~~~~~-~~~v~~v~~ 110 (213)
T TIGR01740 60 DIPNTVKLQYES---KIKQGADMVNVHGVAG-------------------------SESVEAAKEAASEG-GRGLLAVTE 110 (213)
T ss_pred chHHHHHHHHHH---HHhcCCCEEEEcCCCC-------------------------HHHHHHHHHHhhcC-CCeEEEEEc
Confidence 344444444444 5679999999997653 12234445554432 433 33445
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHH---H-
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRD---D- 309 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~---~- 309 (371)
++..... +. .....+....+++...+.|++.+-. ....++.+|+.++.-++.++|+.++ .
T Consensus 111 lss~~~~-~~-~~~~~~~v~~~a~~~~~~g~~g~v~--------------~~~~~~~ir~~~~~~~~vtPGI~~~g~~~~ 174 (213)
T TIGR01740 111 LTSMGSL-DY-GEDTMEKVLEYAKEAKAFGLDGPVC--------------SAEEAKEIRKFTGDFLILTPGIRLQSKGAD 174 (213)
T ss_pred CCCCChh-hh-CcCHHHHHHHHHHHhhhcCCeEEEe--------------CHHHHHHHHHhcCCceEEeCCcCCCCCCcC
Confidence 5542211 11 1223356777788777777664421 1244667787776447777887543 2
Q ss_pred -------HHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 310 -------GNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 310 -------a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
...+++.| +|++.+||+++..++....++
T Consensus 175 dq~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~~ 210 (213)
T TIGR01740 175 DQQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAAK 210 (213)
T ss_pred CccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHHH
Confidence 26677777 999999999999888655543
No 263
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.48 E-value=0.32 Score=46.21 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHh-CCc-ccEEEEcCccC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEI-GAE-RVGIRLSPHAN 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~v-g~~-~i~vrl~~~~~ 239 (371)
...+.+++..++|+-||.|-=.. +++|....+|...-......+-|++++++. +++ .|..|.....
T Consensus 94 ~v~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~- 161 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIEDQV-----------GAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALA- 161 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEecCC-----------CccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCccc-
Confidence 35677788889999999884322 346666665532222333445555555554 444 4666776531
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe---eCCCCH-HHHHHHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA---SGGYNR-DDGNKAVA 315 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~---~Ggit~-~~a~~~l~ 315 (371)
....+++++-++...++|+|.|-+... .....++.+.+.++.|++. .++-++ ...+++-+
T Consensus 162 ------~~g~deAI~Ra~aY~eAGAD~ifi~~~----------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~ 225 (292)
T PRK11320 162 ------VEGLDAAIERAQAYVEAGADMIFPEAM----------TELEMYRRFADAVKVPILANITEFGATPLFTTEELAS 225 (292)
T ss_pred ------ccCHHHHHHHHHHHHHcCCCEEEecCC----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHH
Confidence 123788999999999999999887432 2345677777888889733 233332 23555666
Q ss_pred cCCccEEEechHhh
Q 017448 316 ENYTDLVAYGRSFL 329 (371)
Q Consensus 316 ~g~~D~V~~gR~~l 329 (371)
-| +.+|.++-.++
T Consensus 226 lG-v~~v~~~~~~~ 238 (292)
T PRK11320 226 AG-VAMVLYPLSAF 238 (292)
T ss_pred cC-CcEEEEChHHH
Confidence 67 99999985443
No 264
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.44 E-value=0.051 Score=51.21 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=66.0
Q ss_pred ccCCCCCCCCch--hhhhHHH---HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 196 VNDRTDQYGGSL--ENRCRFA---LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 196 ~N~R~D~yGgs~--enR~r~~---~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
.|+|-+-+.+-+ .|..++. .+-++++|+..+..+|+|-.. +.++ +.+..+.|+|||-+.
T Consensus 153 ~~HR~~L~d~ilikdnHi~~~g~v~~av~~~r~~~~~~~I~VEv~------------tlee----a~eA~~~gaD~I~LD 216 (277)
T PRK05742 153 HNHRIGLYDAFLIKENHIAACGGIAQAVAAAHRIAPGKPVEVEVE------------SLDE----LRQALAAGADIVMLD 216 (277)
T ss_pred ccccCCCcccEEecHHHHHHhCCHHHHHHHHHHhCCCCeEEEEeC------------CHHH----HHHHHHcCCCEEEEC
Confidence 355555444432 3443332 344677777653325665332 2333 334557899999762
Q ss_pred CCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 271 EPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
.+ ....++++.+.. ++|+.+.||||.+.+.++.+.| +|+|++|.....
T Consensus 217 --~~---------~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s 266 (277)
T PRK05742 217 --EL---------SLDDMREAVRLTAGRAKLEASGGINESTLRVIAETG-VDYISIGAMTKD 266 (277)
T ss_pred --CC---------CHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcC
Confidence 11 123344444444 6899999999999999999998 999999975443
No 265
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.43 E-value=0.058 Score=47.51 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCcc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHA 238 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~ 238 (371)
+.+.+.++.+.+.|.|||.+.+ ++++.+++.++. . +|.++++...
T Consensus 13 ~~~~~~~~~~~~~gv~gi~~~g---------------------------------~~i~~~~~~~~~~~~~v~~~v~~~~ 59 (201)
T cd00945 13 EDIAKLCDEAIEYGFAAVCVNP---------------------------------GYVRLAADALAGSDVPVIVVVGFPT 59 (201)
T ss_pred HHHHHHHHHHHHhCCcEEEECH---------------------------------HHHHHHHHHhCCCCCeEEEEecCCC
Confidence 4456666777779999999864 678888888765 4 6777777531
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEee---CCC-CHHHHHH
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIAS---GGY-NRDDGNK 312 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~---Ggi-t~~~a~~ 312 (371)
. ....+++.+.++.+.++|+|.+.+..+.+..+.........+.+.+.+.+ +.|++.- +.. +++...+
T Consensus 60 ~------~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~ 133 (201)
T cd00945 60 G------LTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAK 133 (201)
T ss_pred C------CCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHH
Confidence 1 12356788999999999999998865533211100011124456677774 7786642 223 5554443
Q ss_pred H---HHcCCccEEEechHhh---hCCcHHHHHHhC
Q 017448 313 A---VAENYTDLVAYGRSFL---ANPDLPKRFELN 341 (371)
Q Consensus 313 ~---l~~g~~D~V~~gR~~l---adP~l~~k~~~g 341 (371)
+ +++-.+|+|-..-+.. .|....+++++-
T Consensus 134 ~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~ 168 (201)
T cd00945 134 AARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEA 168 (201)
T ss_pred HHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHh
Confidence 2 3344599998766532 255666666653
No 266
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.42 E-value=0.15 Score=46.17 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=40.3
Q ss_pred chhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 285 PYSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 285 ~~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..+++.++..++ +|++.+||++.+++.+.++.| +|.|++|..++.
T Consensus 143 ~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~vavgs~l~~ 188 (213)
T PRK06552 143 PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVGIGGELNK 188 (213)
T ss_pred HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEEEchHHhC
Confidence 456788888887 899999999999999999999 999999999864
No 267
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.42 E-value=0.025 Score=53.59 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=70.6
Q ss_pred ccCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRF---ALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~---~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-+-.- ..|..++ +.+.++.+|+.++.. .|.|-.. +.+++. +..++|+|+|-+
T Consensus 159 ~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~------------tleea~----eA~~~GaD~I~L 222 (288)
T PRK07428 159 INHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETE------------TLEQVQ----EALEYGADIIML 222 (288)
T ss_pred ccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECC------------CHHHHH----HHHHcCCCEEEE
Confidence 56666655443 3455444 467888888888743 4555322 234332 344689999987
Q ss_pred cCCCcccCCCCCCCCchhhHhHHH-hcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRK-AFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~-~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
... .+.......+.+++ .-++|+.+.||||.+.+.++.+.| +|+|++|.....
T Consensus 223 Dn~-------~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~s 276 (288)
T PRK07428 223 DNM-------PVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETG-VDYISSSAPITR 276 (288)
T ss_pred CCC-------CHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhC
Confidence 422 11111122333333 235789999999999999999998 999999998763
No 268
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.41 E-value=0.02 Score=52.24 Aligned_cols=75 Identities=9% Similarity=-0.054 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..++...+.+.|+.+|-..-.+... ...++..+++.+++.+++||++.||+ +.+++.++.+.| +|.|.+|+++..
T Consensus 143 ~~~~~~~~~~~g~~ii~tdI~~dGt---~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~~ 218 (221)
T TIGR00734 143 LEEVRDFLNSFDYGLIVLDIHSVGT---MKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHHHhcCCEEEEEECCcccc---CCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhhC
Confidence 4456666777776444322221111 22346778899999999999999999 899999988877 999999998753
No 269
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=96.40 E-value=0.14 Score=47.26 Aligned_cols=147 Identities=14% Similarity=0.014 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.-.|+.+.++|||+|-+-. ++....+ . ..| ++.+ -+.-+++.+++|++.+..-||.+.+--
T Consensus 22 ~~sA~i~e~aG~dai~v~~---s~~a~~~-G----~pD--~~~v--tl~em~~~~~~I~r~~~~~pviaD~~~------- 82 (240)
T cd06556 22 YSMAKQFADAGLNVMLVGD---SQGMTVA-G----YDD--TLPY--PVNDVPYHVRAVRRGAPLALIVADLPF------- 82 (240)
T ss_pred HHHHHHHHHcCCCEEEECh---HHHHHhc-C----CCC--CCCc--CHHHHHHHHHHHHhhCCCCCEEEeCCC-------
Confidence 4678888999999999754 3333333 1 112 1111 134467778888887753377775532
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCC-----------------
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYN----------------- 306 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit----------------- 306 (371)
+...+.+++.+.++++.++|++.|++.... .....++.++++ .++|++=-+.+
T Consensus 83 G~g~~~~~~~~~~~~l~~aGa~gv~iED~~---------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~ 152 (240)
T cd06556 83 GAYGAPTAAFELAKTFMRAGAAGVKIEGGE---------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGD 152 (240)
T ss_pred CCCcCHHHHHHHHHHHHHcCCcEEEEcCcH---------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCH
Confidence 223355678889999999999999984431 111223444433 24544221111
Q ss_pred ------HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC
Q 017448 307 ------RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA 343 (371)
Q Consensus 307 ------~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 343 (371)
.+.+..+.+.| +|+|.+- .+ ++++.+++.+.-+
T Consensus 153 ~~~~~ai~Ra~ay~~AG-Ad~i~~e--~~-~~e~~~~i~~~~~ 191 (240)
T cd06556 153 EAGEQLIADALAYAPAG-ADLIVME--CV-PVELAKQITEALA 191 (240)
T ss_pred HHHHHHHHHHHHHHHcC-CCEEEEc--CC-CHHHHHHHHHhCC
Confidence 12344455566 9999995 33 8899999988643
No 270
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=96.38 E-value=0.06 Score=50.39 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGG-SLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGg-s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
++.|+.|++||+-+|---=-- | ..-|.. || +..|. .+.|++|++++. -||.-++...
T Consensus 20 ~eqa~iae~aga~avm~le~~---------p-~d~r~~--ggv~R~~~----p~~I~~I~~~V~-iPVig~~kig----- 77 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERV---------P-ADIRAS--GGVARMSD----PKMIKEIMDAVS-IPVMAKVRIG----- 77 (287)
T ss_pred HHHHHHHHHcCceEEEeeccC---------c-hhhHhc--CCeeecCC----HHHHHHHHHhCC-CCEEEEeecc-----
Confidence 578999999999888531111 2 123444 55 34443 456778888883 3654344321
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLV 322 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V 322 (371)
...-++.|++.|+|+|+-++. ..+..++...+|+.+++|+++ |--|.++|...++.| +|+|
T Consensus 78 ---------h~~Ea~~L~~~GvDiIDeTe~--------lrPade~~~~~K~~f~vpfma-d~~~l~EAlrai~~G-admI 138 (287)
T TIGR00343 78 ---------HFVEAQILEALGVDYIDESEV--------LTPADWTFHIDKKKFKVPFVC-GARDLGEALRRINEG-AAMI 138 (287)
T ss_pred ---------HHHHHHHHHHcCCCEEEccCC--------CCcHHHHHHHHHHHcCCCEEc-cCCCHHHHHHHHHCC-CCEE
Confidence 134567899999999974332 112345677888888888765 333899999999999 9999
Q ss_pred Eec
Q 017448 323 AYG 325 (371)
Q Consensus 323 ~~g 325 (371)
.--
T Consensus 139 ~Tt 141 (287)
T TIGR00343 139 RTK 141 (287)
T ss_pred ecc
Confidence 864
No 271
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.37 E-value=0.031 Score=54.60 Aligned_cols=71 Identities=24% Similarity=0.117 Sum_probs=52.8
Q ss_pred HHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 258 ALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 258 ~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
...+.|.+.|.++...--+.. ...+-...+.++++.++ ++|++.||+ +..|..++|+-| +|+|++||++|.
T Consensus 234 ~a~~tg~~~I~vsnhggrqlD-~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~ 307 (360)
T COG1304 234 GAGGTGADGIEVSNHGGRQLD-WGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY 307 (360)
T ss_pred hhccCCceEEEEEcCCCcccc-CCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence 355677888888753211111 12223456778999987 789999999 899999999999 999999999875
No 272
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=96.34 E-value=0.098 Score=50.78 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=81.0
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhh-hHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENR-CRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR-~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
.++++++.|+|+|.++.-.| .|. ...++++ .+++.+|.+++++. | -|+.+=+=.+.......
T Consensus 111 sve~a~~~GAdAVk~lv~~~--------------~d~-~~~~~~~~~~~l~rv~~ec~~~-g-iPlllE~l~y~~~~~~~ 173 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYR--------------PDE-DDAINDRKHAFVERVGAECRAN-D-IPFFLEPLTYDGKGSDK 173 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeC--------------CCc-chHHHHHHHHHHHHHHHHHHHc-C-CceEEEEeccCCCcccc
Confidence 45678999999999876442 110 0111222 34566666666553 2 14444211111100000
Q ss_pred CC-----ChHHHHHHHHHHHhh--cCccEEEEcCCCcccCCCC------CCCCc---hhhHhHHHhcCCC-eEeeCCCCH
Q 017448 245 DS-----NPEALGLYMAKALNK--YQILYLHILEPRLFNAQDK------LDAPP---YSLLPMRKAFDGT-FIASGGYNR 307 (371)
Q Consensus 245 ~~-----~~~e~~~~la~~l~~--~Gvd~l~v~~~~~~~~~~~------~~~~~---~~~~~ik~~~~~p-Vi~~Ggit~ 307 (371)
.+ ...+.....++.+.+ .|+|++-+.-+........ -.... ...+++.+..++| |+.+|+.+.
T Consensus 174 ~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~~~ 253 (340)
T PRK12858 174 KAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGVSP 253 (340)
T ss_pred ccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCCCH
Confidence 11 234566777888884 9999998744321100000 00111 2344555667889 555777764
Q ss_pred H----HHHHHHHcCCc--cEEEechHhhhCC
Q 017448 308 D----DGNKAVAENYT--DLVAYGRSFLANP 332 (371)
Q Consensus 308 ~----~a~~~l~~g~~--D~V~~gR~~ladP 332 (371)
+ ..+.+++.| + .+|.+||....++
T Consensus 254 ~~f~~~l~~A~~aG-a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 254 ELFRRTLEFACEAG-ADFSGVLCGRATWQDG 283 (340)
T ss_pred HHHHHHHHHHHHcC-CCccchhhhHHHHhhh
Confidence 4 445677776 7 8999999998765
No 273
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=96.31 E-value=0.16 Score=48.10 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhh---hhHHHHHHHHHHHHH-hCCc-ccEEEEcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLEN---RCRFALEIVEAVVNE-IGAE-RVGIRLSP 236 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~en---R~r~~~eiv~avR~~-vg~~-~i~vrl~~ 236 (371)
.+.+.+++..++|+.||.|-=.. .++|...+|+.-+. -..-..+.|++++++ .+++ +|..|...
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~-----------~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa 161 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKL-----------GLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVES 161 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccC-----------CCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34666777788999999883221 34666555654111 123345556666665 4555 57777543
Q ss_pred ccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-----CCCeEeeCCC-CHHHH
Q 017448 237 HANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-----DGTFIASGGY-NRDDG 310 (371)
Q Consensus 237 ~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pVi~~Ggi-t~~~a 310 (371)
.. . ....+++++-++...++|+|.+-+..+ ......++.+.+.+ ++|++.+.+- .....
T Consensus 162 ~~--~----~~~~~eAi~Ra~ay~eAGAD~ifv~~~---------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~ 226 (285)
T TIGR02320 162 LI--L----GKGMEDALKRAEAYAEAGADGIMIHSR---------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPT 226 (285)
T ss_pred cc--c----cCCHHHHHHHHHHHHHcCCCEEEecCC---------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCH
Confidence 21 0 123678999999999999999987421 11123333344444 3587665431 11235
Q ss_pred HHHHHcCCccEEEechHh
Q 017448 311 NKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 311 ~~~l~~g~~D~V~~gR~~ 328 (371)
+++-+-| +..|.++-.+
T Consensus 227 ~eL~~lG-~~~v~~~~~~ 243 (285)
T TIGR02320 227 DEFRDAG-ISVVIYANHL 243 (285)
T ss_pred HHHHHcC-CCEEEEhHHH
Confidence 6666667 9999998444
No 274
>PRK08005 epimerase; Validated
Probab=96.30 E-value=0.12 Score=46.74 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=78.8
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCCh
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNP 248 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~ 248 (371)
...++|+|-|-+|.=. +..+.++++.||+. |- ..|+-+++. .+
T Consensus 76 ~~~~~gad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-G~-k~GlAlnP~---------Tp 118 (210)
T PRK08005 76 WLAAIRPGWIFIHAES--------------------------VQNPSEILADIRAI-GA-KAGLALNPA---------TP 118 (210)
T ss_pred HHHHhCCCEEEEcccC--------------------------ccCHHHHHHHHHHc-CC-cEEEEECCC---------CC
Confidence 3445899999998742 11246778888875 32 568888883 34
Q ss_pred HHHHHHHHHHHhhcCccEEEEc--CCCcccCCCCCCCCchhhHh---HHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEE
Q 017448 249 EALGLYMAKALNKYQILYLHIL--EPRLFNAQDKLDAPPYSLLP---MRKAFD-GTFIASGGYNRDDGNKAVAENYTDLV 322 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~~~---ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V 322 (371)
.+....++. -+|++-+. +|.+... ......+++ +|+..+ ..+-+-||++.+.+.++.+.| +|.+
T Consensus 119 ~~~i~~~l~-----~vD~VlvMsV~PGf~GQ----~f~~~~~~KI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aG-ad~~ 188 (210)
T PRK08005 119 LLPYRYLAL-----QLDALMIMTSEPDGRGQ----QFIAAMCEKVSQSREHFPAAECWADGGITLRAARLLAAAG-AQHL 188 (210)
T ss_pred HHHHHHHHH-----hcCEEEEEEecCCCccc----eecHHHHHHHHHHHHhcccCCEEEECCCCHHHHHHHHHCC-CCEE
Confidence 554444443 25666543 2333211 122223333 444333 258888999999999999999 9999
Q ss_pred EechHhhhCCcHHHHH
Q 017448 323 AYGRSFLANPDLPKRF 338 (371)
Q Consensus 323 ~~gR~~ladP~l~~k~ 338 (371)
.+|++++.+++..+.+
T Consensus 189 V~GsaiF~~~d~~~~~ 204 (210)
T PRK08005 189 VIGRALFTTANYDVTL 204 (210)
T ss_pred EEChHhhCCCCHHHHH
Confidence 9999999888865444
No 275
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=96.30 E-value=0.095 Score=52.17 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~ 239 (371)
++++..++...+.| |..+++ .|.. .- .+..+.+-..+.|+++|+. |.++ .+++..+..
T Consensus 180 d~m~~~a~~~~~~G~~~~~Kk-vG~~------------~~------k~~~~~~~~~~ri~~lr~~-g~~~-~l~vDaN~~ 238 (408)
T TIGR01502 180 DKMILKEVDVLPHGLINSVEE-LGLD------------GE------KLLEYVKWLRDRIIKLGRE-GYAP-IFHIDVYGT 238 (408)
T ss_pred HHHHHHHHHHHhccCccceee-ecCC------------HH------HhhhhHHHHHHHHHHhhcc-CCCC-eEEEEcCCC
Confidence 45566777777776 877774 4321 00 1112334444667777743 5443 334433210
Q ss_pred cCcCCCCChHHHHHHHHHHHhh----cCccEEEEcCCCcccCCCCCCCCchhhHhHHHh-----cCCCeEeeCCC-CHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNK----YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA-----FDGTFIASGGY-NRDD 309 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~----~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~-----~~~pVi~~Ggi-t~~~ 309 (371)
.... ...+.+++.++++.|++ .++ +|+ .|-.. . ....+...++.+++. +++||++...+ |+++
T Consensus 239 ~~~~-~~~~~~~ai~~l~~l~~~~~~~~~-~iE--qPv~~--~-d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d 311 (408)
T TIGR01502 239 IGEA-FGVDIKAMADYIQTLAEAAKPFHL-RIE--GPMDV--G-SRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVED 311 (408)
T ss_pred cccc-cCCCHHHHHHHHHHHHHhCccCCe-EEe--cCCCC--C-cchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHH
Confidence 0000 13456778999999987 344 454 43200 0 001235567778887 58999998887 8999
Q ss_pred HHHHHHcCCccEEEe
Q 017448 310 GNKAVAENYTDLVAY 324 (371)
Q Consensus 310 a~~~l~~g~~D~V~~ 324 (371)
+.++++.+.||+|.+
T Consensus 312 ~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 312 VKFFTDAKAGHMVQI 326 (408)
T ss_pred HHHHHHhCCCCEEEe
Confidence 999999999999987
No 276
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.27 E-value=0.16 Score=48.19 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCc-hhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGS-LENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs-~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~ 240 (371)
.+.+++..++|+-||.|-=.. .++|...++|. +.. .....+-|++++++..+ + .|..|.....
T Consensus 95 ~r~V~~~~~aGaagi~IEDq~-----------~pK~cg~~~~k~lv~-~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~-- 160 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQV-----------NPKRCGHLEGKRLIS-TEEMTGKIEAAVEAREDEDFTIIARTDARE-- 160 (294)
T ss_pred HHHHHHHHHcCCeEEEEECCC-----------CccccCCCCCccccC-HHHHHHHHHHHHHhccCCCeEEEEEecccc--
Confidence 567788889999999885432 35777766664 222 23344455555555432 3 4667776531
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCe---EeeCCCCH-HHHHHHHHc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTF---IASGGYNR-DDGNKAVAE 316 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pV---i~~Ggit~-~~a~~~l~~ 316 (371)
....+++++-++...++|.|.|-+... .....++.+.+.++.|+ +..++-++ ...+++-+-
T Consensus 161 -----~~g~deaI~Ra~aY~eAGAD~ifi~~~----------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~l 225 (294)
T TIGR02319 161 -----SFGLDEAIRRSREYVAAGADCIFLEAM----------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESI 225 (294)
T ss_pred -----cCCHHHHHHHHHHHHHhCCCEEEecCC----------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHc
Confidence 124678999999999999999887432 23456777888888886 34443333 345666666
Q ss_pred CCccEEEechHhh
Q 017448 317 NYTDLVAYGRSFL 329 (371)
Q Consensus 317 g~~D~V~~gR~~l 329 (371)
| +.+|.++-.++
T Consensus 226 G-~~~v~~~~~~~ 237 (294)
T TIGR02319 226 G-YNLAIYPLSGW 237 (294)
T ss_pred C-CcEEEEcHHHH
Confidence 7 99999995544
No 277
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.27 E-value=0.093 Score=48.75 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+.-++.|.+.|+|-|++-.--|.|.+ .+...+.+-|.+|++.++. .+-+|+=....
T Consensus 86 ~~Ea~~Ai~~GAdEiD~Vinig~lk~-------------------g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~---- 141 (257)
T PRK05283 86 LAETRAAIAYGADEVDVVFPYRALMA-------------------GNEQVGFELVKACKEACAA-NVLLKVIIETG---- 141 (257)
T ss_pred HHHHHHHHHcCCCEEeeeccHHHHhC-------------------CcHHHHHHHHHHHHHHhCC-CceEEEEEecc----
Confidence 45566788899999998765554332 2356678888899988863 23344433211
Q ss_pred CCCChHH-HHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-------CCCeEeeCCC-CHHHHHHHH
Q 017448 244 QDSNPEA-LGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-------DGTFIASGGY-NRDDGNKAV 314 (371)
Q Consensus 244 ~~~~~~e-~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-------~~pVi~~Ggi-t~~~a~~~l 314 (371)
..+.+ +-...++...++|+|||--+.|.. +.......++.+++.+ ++.|=+.||| |.++|.++|
T Consensus 142 --~L~~ee~i~~a~~~a~~aGADFVKTSTGf~-----~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i 214 (257)
T PRK05283 142 --ELKDEALIRKASEIAIKAGADFIKTSTGKV-----PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYL 214 (257)
T ss_pred --ccCCHHHHHHHHHHHHHhCCCEEEcCCCCC-----CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHH
Confidence 11223 356678888899999998766532 1223345555555554 2447789999 999999999
Q ss_pred HcC
Q 017448 315 AEN 317 (371)
Q Consensus 315 ~~g 317 (371)
+.|
T Consensus 215 ~ag 217 (257)
T PRK05283 215 ALA 217 (257)
T ss_pred HHH
Confidence 988
No 278
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=96.26 E-value=0.043 Score=55.04 Aligned_cols=109 Identities=9% Similarity=0.103 Sum_probs=76.7
Q ss_pred hhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC--cCC-------CCChHHHHHHHHHH-HhhcCccEEEEcCCCcc
Q 017448 207 LENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM--EAQ-------DSNPEALGLYMAKA-LNKYQILYLHILEPRLF 275 (371)
Q Consensus 207 ~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~--~~~-------~~~~~e~~~~la~~-l~~~Gvd~l~v~~~~~~ 275 (371)
.+...+++.+.|++++..+|++ .|++..+..+.+. +.. ...+.++++++++. +++.++.||+ .|
T Consensus 212 ~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~~~~~~~~~s~~eai~~~~~lle~~~i~~iE--dP--- 286 (425)
T TIGR01060 212 NEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYVYKGENKQLTSEEMIEYYKELVEKYPIVSIE--DG--- 286 (425)
T ss_pred cHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceeeecCcccccCHHHHHHHHHHHHhcCCcEEEE--cC---
Confidence 3566777888888888889977 6888876533222 100 01255678888885 5778888876 44
Q ss_pred cCCCCCCCCchhhHhHHHhc--CCCeEeeCCC-C-HHHHHHHHHcCCccEEEe
Q 017448 276 NAQDKLDAPPYSLLPMRKAF--DGTFIASGGY-N-RDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi-t-~~~a~~~l~~g~~D~V~~ 324 (371)
-....+...+.+++.+ ++||++...+ + ++++.++++.+.||.|.+
T Consensus 287 ----l~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~i 335 (425)
T TIGR01060 287 ----LSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILI 335 (425)
T ss_pred ----CCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEe
Confidence 1233456677899998 7888777665 4 999999999999999865
No 279
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.25 E-value=0.11 Score=47.30 Aligned_cols=137 Identities=19% Similarity=0.293 Sum_probs=83.4
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 017448 148 PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA 227 (371)
Q Consensus 148 ~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~ 227 (371)
.+-|.. +.+..++.|++ +|+|-|-+|.=. +.-+.++++.||+. |-
T Consensus 67 vHLMv~-~P~~~i~~~~~-------~gad~I~~H~Ea--------------------------~~~~~~~l~~Ir~~-g~ 111 (223)
T PRK08745 67 VHLMVE-PVDRIVPDFAD-------AGATTISFHPEA--------------------------SRHVHRTIQLIKSH-GC 111 (223)
T ss_pred EEeccC-CHHHHHHHHHH-------hCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CC
Confidence 344543 35555555544 799999998742 01246788888886 42
Q ss_pred cccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc--CCCcc-cCCCCCCCCchhhHhHHHhc-----CCCe
Q 017448 228 ERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL--EPRLF-NAQDKLDAPPYSLLPMRKAF-----DGTF 299 (371)
Q Consensus 228 ~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~--~~~~~-~~~~~~~~~~~~~~~ik~~~-----~~pV 299 (371)
..|+=|++. .+.+....++. -+|+|-+. .|.+. +.+ -+ ....-++++|+.. +..+
T Consensus 112 -k~GlalnP~---------T~~~~i~~~l~-----~vD~VlvMtV~PGf~GQ~f-i~-~~l~KI~~l~~~~~~~~~~~~I 174 (223)
T PRK08745 112 -QAGLVLNPA---------TPVDILDWVLP-----ELDLVLVMSVNPGFGGQAF-IP-SALDKLRAIRKKIDALGKPIRL 174 (223)
T ss_pred -ceeEEeCCC---------CCHHHHHHHHh-----hcCEEEEEEECCCCCCccc-cH-HHHHHHHHHHHHHHhcCCCeeE
Confidence 568888883 35554444443 25665442 33332 111 00 0111223333332 3447
Q ss_pred EeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHH
Q 017448 300 IASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 300 i~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k 337 (371)
-+-||++.+.+.++.+.| +|.+.+|++++..++....
T Consensus 175 eVDGGI~~eti~~l~~aG-aDi~V~GSaiF~~~d~~~~ 211 (223)
T PRK08745 175 EIDGGVKADNIGAIAAAG-ADTFVAGSAIFNAPDYAQV 211 (223)
T ss_pred EEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHH
Confidence 888999999999999999 9999999999977775433
No 280
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.24 E-value=0.084 Score=47.75 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=35.3
Q ss_pred hHHHhcCCCe--EeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHH
Q 017448 290 PMRKAFDGTF--IASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPK 336 (371)
Q Consensus 290 ~ik~~~~~pV--i~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~ 336 (371)
.+++.=+.|| ++.||+ ||.||.-+++-| ||.|.+|.+.+...+-.+
T Consensus 200 ~~~~~grLPVvnFAAGGvATPADAALMM~LG-adGVFVGSGIFKS~~P~~ 248 (296)
T COG0214 200 EVAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSNPEK 248 (296)
T ss_pred HHHHhCCCCeEeecccCcCChhHHHHHHHhC-CCeEEecccccCCCCHHH
Confidence 3444445675 477998 999999999999 999999999886554333
No 281
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.24 E-value=0.58 Score=45.43 Aligned_cols=151 Identities=11% Similarity=0.065 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccE
Q 017448 155 EIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVG 231 (371)
Q Consensus 155 eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~ 231 (371)
-++.+++.-.+..++|.++||+-|-|.+.+- ++|...++..++++-.+. .|-. -||
T Consensus 104 ~~~~~~~a~~~~~~~a~~~GftSVMiDgS~l--------------------p~eENI~~TkevVe~Ah~-~gvsVEaElG 162 (345)
T cd00946 104 WFDGLLEADEEYFKQHGEPLFSSHMLDLSEE--------------------PLEENIEICKKYLERMAK-INMWLEMEIG 162 (345)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEeeCCCC--------------------CHHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 4556666555666788899999999987761 577889999999988854 3321 122
Q ss_pred EEEcCccCcCcC------CCCChHHHHHHHHHHHhh-cCccEEEEcCCCcccCCCC--CCCCchhhHhH----HHhc---
Q 017448 232 IRLSPHANYMEA------QDSNPEALGLYMAKALNK-YQILYLHILEPRLFNAQDK--LDAPPYSLLPM----RKAF--- 295 (371)
Q Consensus 232 vrl~~~~~~~~~------~~~~~~e~~~~la~~l~~-~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~i----k~~~--- 295 (371)
++...++.... ....+.+++.+|+++... .|+|.|.++-|+.+..+++ +.-+.+.++.| ++.+
T Consensus 163 -~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~ 241 (345)
T cd00946 163 -ITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLA 241 (345)
T ss_pred -ccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccc
Confidence 12221111000 012356778888876644 4899999988887666531 22344567777 5555
Q ss_pred ---CCCeEeeCC--CCHHHHHHHHHcCCccEEEechHh
Q 017448 296 ---DGTFIASGG--YNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 296 ---~~pVi~~Gg--it~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
++|++.=|+ +..++..++++.|. -=|=++..+
T Consensus 242 ~~~~ipLVLHGgSG~~~e~i~kai~~GI-~KiNi~T~l 278 (345)
T cd00946 242 DDKPLYFVFHGGSGSTKEEIREAISYGV-VKMNIDTDT 278 (345)
T ss_pred cCCCCCEEEeCCCCCCHHHHHHHHHcCC-eeEEeCcHH
Confidence 678665554 57899999999994 445565544
No 282
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.22 E-value=0.064 Score=48.74 Aligned_cols=124 Identities=15% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChH
Q 017448 170 AIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPE 249 (371)
Q Consensus 170 a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~ 249 (371)
+.++|+|.+-+|+..| ...+.+.++++++ .|. .++|-+... .+.
T Consensus 76 ~~~~Gad~vTvH~~a~-------------------------~~~i~~~~~~~~~-~g~-~~~V~llts---------~~~ 119 (216)
T PRK13306 76 AFEAGADWVTVICAAH-------------------------IPTIKAALKVAKE-FNG-EIQIELYGN---------WTW 119 (216)
T ss_pred HHHCCCCEEEEeCCCC-------------------------HHHHHHHHHHHHH-cCC-EEEEEECCC---------CCH
Confidence 6689999999998653 2334555565554 232 577877762 133
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCC--CeEeeCCCCHHHHHHHHHcCCccEEEechH
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDG--TFIASGGYNRDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~--pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~ 327 (371)
+.. +.+.+.+++.+.++........ +-......+..||+.... .+.+.||++++.+....+.+ +|++.+||+
T Consensus 120 ~~l----~~~~~~~~~~~vl~~a~~~~~~-G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~-ad~~VvGr~ 193 (216)
T PRK13306 120 EQA----QQWRDAGISQVIYHRSRDAQLA-GVAWGEKDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIP-VKTFIAGRA 193 (216)
T ss_pred HHH----HHHHcCChhhhhhhhhhhhhhc-CCCCCHHHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCC-CCEEEECCc
Confidence 322 2344556554444333221111 111223345566666532 27889999988887766665 999999999
Q ss_pred hhhCCcHH
Q 017448 328 FLANPDLP 335 (371)
Q Consensus 328 ~ladP~l~ 335 (371)
.+..+|-.
T Consensus 194 I~~a~dp~ 201 (216)
T PRK13306 194 IRGAADPA 201 (216)
T ss_pred ccCCCCHH
Confidence 99888743
No 283
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=96.20 E-value=0.36 Score=46.88 Aligned_cols=120 Identities=9% Similarity=0.077 Sum_probs=74.2
Q ss_pred chhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccCcC--cC----CCCChHHHHHHHHHHHh-hcCccEEEEcCCCcc
Q 017448 206 SLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHANYM--EA----QDSNPEALGLYMAKALN-KYQILYLHILEPRLF 275 (371)
Q Consensus 206 s~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~~~--~~----~~~~~~e~~~~la~~l~-~~Gvd~l~v~~~~~~ 275 (371)
++|...+...++++-.+. .|-. -|| ++...++.. +. ....+.+++.+|+++.. .-|||.|.++-|+..
T Consensus 147 pfeENI~~TrevVe~Ah~-~GvsVEaELG-~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~H 224 (357)
T TIGR01520 147 PIEENIEICVKYLKRMAK-IKMWLEIEIG-ITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVH 224 (357)
T ss_pred CHHHHHHHHHHHHHHHHH-cCCEEEEEec-ccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeecccc
Confidence 378889999999988654 3321 133 232222210 00 01235677888877663 348999999888866
Q ss_pred cCCC--CCCCCchhhHhH----HHhcCCC------eEeeCC--CCHHHHHHHHHcCCccEEEechHh
Q 017448 276 NAQD--KLDAPPYSLLPM----RKAFDGT------FIASGG--YNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 276 ~~~~--~~~~~~~~~~~i----k~~~~~p------Vi~~Gg--it~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
..++ .+.-+.+.++.| ++.+++| ++.=|+ +..++..++++.| +-=|=++..+
T Consensus 225 G~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~G-I~KINi~Tdl 290 (357)
T TIGR01520 225 GVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYG-VVKMNIDTDT 290 (357)
T ss_pred CCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcHH
Confidence 5552 223345667888 4566787 665554 5789999999999 4446665544
No 284
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.16 E-value=0.081 Score=49.22 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE---EcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR---LSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr---l~~~~~~ 240 (371)
.+-|+...++|+++|=+. +-.+-||||+++ +..||+++.- ||.-| +.++.-+
T Consensus 71 ~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~~d--------L~~v~~~~~~-PvL~KDFIid~~QI~ 125 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVL----------------TEPKFFGGSLED--------LRAVRKAVDL-PVLRKDFIIDPYQIY 125 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE------------------SCCCHHHHHH--------HHHHHHHSSS--EEEES---SHHHHH
T ss_pred HHHHHHHHhcCCCEEEEE----------------CCCCCCCCCHHH--------HHHHHHHhCC-CcccccCCCCHHHHH
Confidence 566777788999999854 444568888554 6667766631 33322 0100000
Q ss_pred ----Cc------CCCCChHHHHHHHHHHHhhcCccE-EEEcCCC-------ccc-----CCC---CCCCCchhhHhHHHh
Q 017448 241 ----ME------AQDSNPEALGLYMAKALNKYQILY-LHILEPR-------LFN-----AQD---KLDAPPYSLLPMRKA 294 (371)
Q Consensus 241 ----~~------~~~~~~~e~~~~la~~l~~~Gvd~-l~v~~~~-------~~~-----~~~---~~~~~~~~~~~ik~~ 294 (371)
.+ +-.-.+.+...++.......|++. ++||... ... ..+ ....+......+...
T Consensus 126 eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ 205 (254)
T PF00218_consen 126 EARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPL 205 (254)
T ss_dssp HHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCH
T ss_pred HHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhh
Confidence 00 000123444566777777778774 4665421 000 000 111112233445555
Q ss_pred cC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 295 FD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 295 ~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
++ +.+|+-+|+ +++++..+...| +|.|.+|..++..||...++++
T Consensus 206 ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 206 IPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp SHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHHH
T ss_pred CccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHhc
Confidence 43 457788888 899999999888 9999999999999999888764
No 285
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.084 Score=49.46 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=92.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.-+|+.++++||+++-+.++. ++.-+ -..| +| +.. +.-+++.++.|-+++. -||.|.+..
T Consensus 28 ~~sA~la~~aGF~al~~sg~~---vA~sl-----G~pD--~~-~~t-~~e~~~~vrrI~~a~~-lPv~vD~dt------- 87 (289)
T COG2513 28 AGSALLAERAGFKALYLSGAG---VAASL-----GLPD--LG-ITT-LDEVLADARRITDAVD-LPVLVDIDT------- 87 (289)
T ss_pred HHHHHHHHHcCCeEEEeccHH---HHHhc-----CCCc--cc-ccc-HHHHHHHHHHHHhhcC-CceEEeccC-------
Confidence 468999999999999976442 22111 1122 11 111 2223455555555552 278887653
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----CCCCCCCCchhhHhHHHh---cCCC-eEe--------eCCC-
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFN-----AQDKLDAPPYSLLPMRKA---FDGT-FIA--------SGGY- 305 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~-----~~~~~~~~~~~~~~ik~~---~~~p-Vi~--------~Ggi- 305 (371)
+.++ ...+..-++.++++|+..+||..-.... ..++-.........||.+ ...| ++. .|++
T Consensus 88 GfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 88 GFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCc-HHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 2244 4557778889999999999996543221 110111122334444443 3323 333 3444
Q ss_pred -CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC
Q 017448 306 -NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA 343 (371)
Q Consensus 306 -t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 343 (371)
..+.+...++.| +|+|.. +.+.+++.+.++.+..+
T Consensus 167 ~AI~Ra~AY~eAG-AD~if~--~al~~~e~i~~f~~av~ 202 (289)
T COG2513 167 DAIERAQAYVEAG-ADAIFP--EALTDLEEIRAFAEAVP 202 (289)
T ss_pred HHHHHHHHHHHcC-CcEEcc--ccCCCHHHHHHHHHhcC
Confidence 256778888888 998877 78889999999988865
No 286
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.14 E-value=0.11 Score=48.69 Aligned_cols=121 Identities=14% Similarity=0.141 Sum_probs=76.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGG-SLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGg-s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
++.|+.|.+||+-+|-.---- |. ..|.- || ...| -.+.|++||+.+. -||.=++..
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~---------~~-~~~~~--~~v~R~~----~~~~I~~Ik~~V~-iPVIGi~K~------ 74 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERV---------PA-DIRAA--GGVARMA----DPKMIKEIMDAVS-IPVMAKVRI------ 74 (283)
T ss_pred HHHHHHHHHcCceEEeeeccC---------ch-hhhhc--CCeeecC----CHHHHHHHHHhCC-CCeEEeeeh------
Confidence 688999999999888642111 11 11221 33 2222 2567889999883 254322222
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLV 322 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V 322 (371)
+ ...-++.|+++|+|+|+-+.. .. +...+...+|+.++.|+++ +-=|.++|..+++.| +|+|
T Consensus 75 ---~-----~~~Ea~~L~eaGvDiIDaT~r-------~r-P~~~~~~~iK~~~~~l~MA-D~stleEal~a~~~G-ad~I 136 (283)
T cd04727 75 ---G-----HFVEAQILEALGVDMIDESEV-------LT-PADEEHHIDKHKFKVPFVC-GARNLGEALRRISEG-AAMI 136 (283)
T ss_pred ---h-----HHHHHHHHHHcCCCEEeccCC-------CC-cHHHHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCC-CCEE
Confidence 0 134567889999999973332 11 2345778889888777654 333899999999999 9999
Q ss_pred Eec
Q 017448 323 AYG 325 (371)
Q Consensus 323 ~~g 325 (371)
+--
T Consensus 137 ~TT 139 (283)
T cd04727 137 RTK 139 (283)
T ss_pred Eec
Confidence 854
No 287
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.12 E-value=0.0095 Score=57.78 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCccEEEEcCCCcccCC---CCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEechH
Q 017448 253 LYMAKALNKYQILYLHILEPRLFNAQ---DKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~~~~~~~~---~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~ 327 (371)
...++..++.|+|.+-.......... ........+..+|++.++ +|||+.||| +......++.-| +|+|-||..
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~ 215 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTR 215 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhh
Confidence 35778889999998866443222111 011112346678999999 899999999 999999999999 999999999
Q ss_pred hhhCCc
Q 017448 328 FLANPD 333 (371)
Q Consensus 328 ~ladP~ 333 (371)
|++-.+
T Consensus 216 Fl~t~E 221 (336)
T COG2070 216 FLATKE 221 (336)
T ss_pred hhcccc
Confidence 998653
No 288
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.09 E-value=0.1 Score=49.12 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
+.+-.+...+.|.|||-+.+.-|. |. -=+.+.|.+++..+++ .++.. +|.+=++.
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE----~~-----------~ls~~Er~~l~~~~~~----~~~~~~~vi~gv~~----- 75 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGE----AP-----------TLTDEERKEVIEAVVE----AVAGRVPVIAGVGA----- 75 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcc----cc-----------cCCHHHHHHHHHHHHH----HhCCCCeEEEecCC-----
Confidence 444445556679999998776541 11 1235666665544444 44433 55443332
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKAV 314 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~l 314 (371)
...++++++++..++.|+|.+-+..|.+.... ......+.+.|.+.+++||+. +|. ++++...++.
T Consensus 76 -----~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~ 148 (281)
T cd00408 76 -----NSTREAIELARHAEEAGADGVLVVPPYYNKPS--QEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLA 148 (281)
T ss_pred -----ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHh
Confidence 24567899999999999999998777654322 112234556677778889763 344 3788888887
Q ss_pred HcCCccEEEechHhhhCCcHHHHHHh
Q 017448 315 AENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 315 ~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
+.. .++++ .-...|.....+++.
T Consensus 149 ~~~--~v~gi-K~s~~d~~~~~~~~~ 171 (281)
T cd00408 149 EHP--NIVGI-KDSSGDLDRLTRLIA 171 (281)
T ss_pred cCC--CEEEE-EeCCCCHHHHHHHHH
Confidence 533 33333 222234444555544
No 289
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.04 Score=53.65 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=86.8
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc-cEEEEcCccCcCcCCCC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSPHANYMEAQDS 246 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~-i~vrl~~~~~~~~~~~~ 246 (371)
.+..++|.|.|-|....|+ .-+-+|.|+-||+..+... |+ +
T Consensus 257 ~ll~~aGvdvviLDSSqGn------------------------S~~qiemik~iK~~yP~l~Via--------------G 298 (503)
T KOG2550|consen 257 DLLVQAGVDVVILDSSQGN------------------------SIYQLEMIKYIKETYPDLQIIA--------------G 298 (503)
T ss_pred HHhhhcCCcEEEEecCCCc------------------------chhHHHHHHHHHhhCCCceeec--------------c
Confidence 4557899999999988864 2345899999999987542 22 1
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcc----cCCC-CCCCCch---hhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcC
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLF----NAQD-KLDAPPY---SLLPMRKAFDGTFIASGGY-NRDDGNKAVAEN 317 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~----~~~~-~~~~~~~---~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g 317 (371)
+-+ +.+-++.|-++|+|.|.|..+.-+ +... -..+... -..+....+.+|||+-||+ +.....++|.-|
T Consensus 299 NVV--T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lG 376 (503)
T KOG2550|consen 299 NVV--TKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLG 376 (503)
T ss_pred cee--eHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcC
Confidence 111 345677888999999998765411 1100 1111112 2345666789999999999 888999999999
Q ss_pred CccEEEechHhhhCCcHH
Q 017448 318 YTDLVAYGRSFLANPDLP 335 (371)
Q Consensus 318 ~~D~V~~gR~~ladP~l~ 335 (371)
++.||||--|-+.-+-+
T Consensus 377 -AstVMmG~lLAgtTEap 393 (503)
T KOG2550|consen 377 -ASTVMMGGLLAGTTEAP 393 (503)
T ss_pred -chhheecceeeeeeccC
Confidence 99999996555444433
No 290
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.00 E-value=0.22 Score=44.76 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=38.7
Q ss_pred hhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhC
Q 017448 286 YSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 286 ~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.+++.++.-++ +|++.+||++.+++.+.++.| +..|++|..++..
T Consensus 137 ~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~~ 182 (204)
T TIGR01182 137 KMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVPK 182 (204)
T ss_pred HHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcCc
Confidence 46677777664 789999999999999999999 9999999998753
No 291
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.98 E-value=0.25 Score=44.64 Aligned_cols=128 Identities=20% Similarity=0.180 Sum_probs=77.2
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~ 247 (371)
+.+.++|+|.|-+|+-.|. ..+.++++.+|+. |- .+++=+++.. ... ...
T Consensus 74 ~~~~~~gad~vtvh~e~g~-------------------------~~l~~~i~~~~~~-g~-~~~v~~~~~~-~~~--~~~ 123 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGR-------------------------DSLKAVVEAAAES-GG-KVFVVVEMSH-PGA--LEF 123 (215)
T ss_pred HHHHhCCCCEEEEcCcCCH-------------------------HHHHHHHHHHHhc-CC-eEEEEEeCCC-CCC--CCC
Confidence 4566799999999987631 1245566777653 32 4444444421 110 111
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCCCHH--HHHHHHHcCCccEEEe
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGYNRD--DGNKAVAENYTDLVAY 324 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggit~~--~a~~~l~~g~~D~V~~ 324 (371)
..+....++.+..+.|.+...+.. ....-++.+++..+.. .+..||++.+ ...++++.| +|++.+
T Consensus 124 ~~~~~~~v~~m~~e~G~~g~~~~~-----------~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG-ad~iV~ 191 (215)
T PRK13813 124 IQPHADKLAKLAQEAGAFGVVAPA-----------TRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIKAG-ADYVIV 191 (215)
T ss_pred HHHHHHHHHHHHHHhCCCeEEECC-----------CcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC-CCEEEE
Confidence 223455566667777876554321 1123345666666544 4477888665 488888888 999999
Q ss_pred chHhhhCCcHHHH
Q 017448 325 GRSFLANPDLPKR 337 (371)
Q Consensus 325 gR~~ladP~l~~k 337 (371)
||+++..+|..+.
T Consensus 192 Gr~I~~~~d~~~~ 204 (215)
T PRK13813 192 GRSIYNAADPREA 204 (215)
T ss_pred CcccCCCCCHHHH
Confidence 9999988875433
No 292
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.98 E-value=0.14 Score=47.01 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=77.5
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC----cccEEE-EcCcc-
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA----ERVGIR-LSPHA- 238 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~----~~i~vr-l~~~~- 238 (371)
..++.+.++|+|.|-+|+..| .+.++++.++..+ ..++|- |+...
T Consensus 71 ~~i~~~~~~gad~itvH~~ag-----------------------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~~ 121 (230)
T PRK00230 71 KAVRALAKLGVDMVNVHASGG-----------------------------PRMMKAAREALEPKSRPLLIAVTVLTSMDE 121 (230)
T ss_pred HHHHHHHHcCCCEEEEcccCC-----------------------------HHHHHHHHHHhhccCCCeEEEEEECCCCCH
Confidence 455556789999999998653 3444444444321 245554 33221
Q ss_pred -CcCcCCCCCh-HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCCCHH-------
Q 017448 239 -NYMEAQDSNP-EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGYNRD------- 308 (371)
Q Consensus 239 -~~~~~~~~~~-~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggit~~------- 308 (371)
++...+...+ .+....+++...+.|+|.+-++. ...+.+|+.+. ..+..++|++++
T Consensus 122 ~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~--------------~~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq 187 (230)
T PRK00230 122 EDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSA--------------QEAAAIREATGPDFLLVTPGIRPAGSDAGDQ 187 (230)
T ss_pred HHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeCh--------------HHHHHHHhhcCCceEEEcCCcCCCCCCcchH
Confidence 1111111112 33445667777788888775321 12455666653 335666777543
Q ss_pred ----HHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 309 ----DGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 309 ----~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
...++++.| +|+|.+||+....+|-...+
T Consensus 188 ~~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a 220 (230)
T PRK00230 188 KRVMTPAQAIAAG-SDYIVVGRPITQAADPAAAY 220 (230)
T ss_pred HHHhCHHHHHHcC-CCEEEECCcccCCCCHHHHH
Confidence 577888877 99999999999888765544
No 293
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.87 E-value=0.043 Score=55.15 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred cCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCccc
Q 017448 197 NDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFN 276 (371)
Q Consensus 197 N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~ 276 (371)
+...|-|+ ..-+...|..+|+..+..+|+||+.+.. .++. ++--..++++|+|.|+...-..
T Consensus 279 ~pHHDiys------ieDLaqlI~dLk~~~~~~~I~VKlva~~---------~v~~---iaagvakA~AD~I~IdG~~GGT 340 (485)
T COG0069 279 PPHHDIYS------IEDLAQLIKDLKEANPWAKISVKLVAEH---------GVGT---IAAGVAKAGADVITIDGADGGT 340 (485)
T ss_pred CCcccccC------HHHHHHHHHHHHhcCCCCeEEEEEeccc---------chHH---HHhhhhhccCCEEEEcCCCCcC
Confidence 46778887 4557788889998876557999998732 2222 2222778899999997522111
Q ss_pred ---C-----CCCCCCCchhhHhHHHh-----c--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 ---A-----QDKLDAPPYSLLPMRKA-----F--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 ---~-----~~~~~~~~~~~~~ik~~-----~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
+ +-.-++... +.++.+. + ++.+++.|++ |..|...++.-| +|.|.+|++.+.
T Consensus 341 GAsP~~~~~~~GiP~e~g-lae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLG-Ad~v~~gTa~li 408 (485)
T COG0069 341 GASPLTSIDHAGIPWELG-LAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALG-ADAVGFGTAALV 408 (485)
T ss_pred CCCcHhHhhcCCchHHHH-HHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhC-cchhhhchHHHH
Confidence 0 001111111 1222111 2 2448899999 999999999999 999999999764
No 294
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.87 E-value=0.047 Score=51.39 Aligned_cols=92 Identities=13% Similarity=0.137 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA 294 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~ 294 (371)
.+.++.+|+..+..+|+|-.. +.+++. +..+.|+|||-+..-. +.......+.+++.
T Consensus 171 ~~av~~~R~~~~~~~IgVev~------------t~eea~----~A~~~gaD~I~ld~~~-------p~~l~~~~~~~~~~ 227 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD------------SLEEAL----AAAEAGADILQLDKFS-------PEELAELVPKLRSL 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC------------CHHHHH----HHHHcCCCEEEECCCC-------HHHHHHHHHHHhcc
Confidence 467788888775445555332 233322 2346899999874211 11111233444444
Q ss_pred c-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 295 F-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 295 ~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
. ++|+++.||++++...++.+.| +|+|+++.-.-+
T Consensus 228 ~~~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~~a 263 (272)
T cd01573 228 APPVLLAAAGGINIENAAAYAAAG-ADILVTSAPYYA 263 (272)
T ss_pred CCCceEEEECCCCHHHHHHHHHcC-CcEEEEChhhcC
Confidence 2 6899999999999999999998 999988765443
No 295
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.80 E-value=0.38 Score=43.99 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=77.6
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCC
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~ 247 (371)
...++|+|-|-+|.=. +..+.++++.||+. |-. ..|+-|++. .
T Consensus 86 ~~~~aGad~It~H~Ea--------------------------~~~~~~~l~~Ik~~-g~~~kaGlalnP~---------T 129 (228)
T PRK08091 86 ACVAAGADIVTLQVEQ--------------------------THDLALTIEWLAKQ-KTTVLIGLCLCPE---------T 129 (228)
T ss_pred HHHHhCCCEEEEcccC--------------------------cccHHHHHHHHHHC-CCCceEEEEECCC---------C
Confidence 3346899999998642 01256788888875 321 468888883 3
Q ss_pred hHHHHHHHHHHHhhcCccEEEEc--CCCcccCCCCCCCCchh---hHhHHHhc-----CCCeEeeCCCCHHHHHHHHHcC
Q 017448 248 PEALGLYMAKALNKYQILYLHIL--EPRLFNAQDKLDAPPYS---LLPMRKAF-----DGTFIASGGYNRDDGNKAVAEN 317 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~~~~~~~~---~~~ik~~~-----~~pVi~~Ggit~~~a~~~l~~g 317 (371)
+.+....++. -+|+|-+. .|.+.... ..... ++++|+.. +..+-+-||++.+.+.++.+.|
T Consensus 130 p~~~i~~~l~-----~vD~VLiMtV~PGfgGQ~----f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aG 200 (228)
T PRK08091 130 PISLLEPYLD-----QIDLIQILTLDPRTGTKA----PSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQ 200 (228)
T ss_pred CHHHHHHHHh-----hcCEEEEEEECCCCCCcc----ccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCC
Confidence 5554444443 26666543 33332111 11122 23333322 3447788999999999999999
Q ss_pred CccEEEechHhhhCCcHHHH
Q 017448 318 YTDLVAYGRSFLANPDLPKR 337 (371)
Q Consensus 318 ~~D~V~~gR~~ladP~l~~k 337 (371)
+|.+.+|++++.+++.-+.
T Consensus 201 -aD~~V~GSalF~~~d~~~~ 219 (228)
T PRK08091 201 -IDWVVSGSALFSQGELKTT 219 (228)
T ss_pred -CCEEEEChhhhCCCCHHHH
Confidence 9999999999988886443
No 296
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.76 E-value=0.071 Score=60.11 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=74.2
Q ss_pred CCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC
Q 017448 198 DRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA 277 (371)
Q Consensus 198 ~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~ 277 (371)
.-.|-|. ..-+.++|..+|+..+.-+|+||+..... +. .++.-+.++|+|+|.|+...-..-
T Consensus 973 phhdiyS------ieDL~qlI~~Lk~~~~~~~I~VKl~a~~~---------vg---~ia~gvaka~aD~I~IdG~~GGTG 1034 (1485)
T PRK11750 973 PHHDIYS------IEDLAQLIFDLKQVNPKALVSVKLVSEPG---------VG---TIATGVAKAYADLITISGYDGGTG 1034 (1485)
T ss_pred CCccCCC------HHHHHHHHHHHHHhCCCCcEEEEEccCCC---------cc---HHHhChhhcCCCEEEEeCCCCCcc
Confidence 4455555 44478889999998764489999987421 11 144456679999999976321111
Q ss_pred C-------CCCCCCchhhHhHHHh-----c--CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 278 Q-------DKLDAPPYSLLPMRKA-----F--DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 278 ~-------~~~~~~~~~~~~ik~~-----~--~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
. ....+....+.++.+. + ++.+++.|++ |..|...++.-| +|.|++||+++-
T Consensus 1035 Aap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG-Ad~~~~gt~~li 1101 (1485)
T PRK11750 1035 ASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG-AESFGFGTGPMV 1101 (1485)
T ss_pred cccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC-CcccccchHHHH
Confidence 0 0111111122222222 2 3669999999 999999999999 999999999763
No 297
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.75 E-value=0.17 Score=47.79 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
.+.+-.+...++|.|||-+.+.-|. |. -=+.+.|.++ ++.+++.++.. +|.+=++
T Consensus 22 ~~~~~i~~l~~~Gv~gl~v~GstGE----~~-----------~lt~~Er~~l----~~~~~~~~~~~~~vi~gv~----- 77 (284)
T cd00950 22 ALERLIEFQIENGTDGLVVCGTTGE----SP-----------TLSDEEHEAV----IEAVVEAVNGRVPVIAGTG----- 77 (284)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcc----hh-----------hCCHHHHHHH----HHHHHHHhCCCCcEEeccC-----
Confidence 3444445566799999998865542 11 1134556555 44444555433 4443222
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKA 313 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~ 313 (371)
..+.++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+..+.||+. +|. ++++..+++
T Consensus 78 -----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~--~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L 150 (284)
T cd00950 78 -----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPS--QEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRL 150 (284)
T ss_pred -----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCC--HHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHH
Confidence 234677899999999999999998777554322 112234566677777888662 343 488888888
Q ss_pred HHcC
Q 017448 314 VAEN 317 (371)
Q Consensus 314 l~~g 317 (371)
.+..
T Consensus 151 ~~~p 154 (284)
T cd00950 151 AEHP 154 (284)
T ss_pred hcCC
Confidence 8654
No 298
>PRK08227 autoinducer 2 aldolase; Validated
Probab=95.75 E-value=0.36 Score=45.12 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=78.0
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCcCcCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANYMEAQ 244 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~~~~~ 244 (371)
.+.|.+.|+|+|-+|.-- |+..|+++ +.+ +..|.+.+-. . |+.+ +.+. .. .
T Consensus 100 VeeAvrlGAdAV~~~v~~-------------------Gs~~E~~~--l~~-l~~v~~ea~~~G~Plla-~~pr--G~--~ 152 (264)
T PRK08227 100 MEDAVRLNACAVAAQVFI-------------------GSEYEHQS--IKN-IIQLVDAGLRYGMPVMA-VTAV--GK--D 152 (264)
T ss_pred HHHHHHCCCCEEEEEEec-------------------CCHHHHHH--HHH-HHHHHHHHHHhCCcEEE-EecC--CC--C
Confidence 445888999999987543 43344432 333 3333333321 1 5444 3331 11 1
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC--CH----HHHHHHHHcCC
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY--NR----DDGNKAVAENY 318 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi--t~----~~a~~~l~~g~ 318 (371)
..+..+.....++.-.+.|.|++-+-- .. ...+++-+..++||+..||= +. +...++++.|
T Consensus 153 ~~~~~~~ia~aaRiaaELGADiVK~~y-----------~~-~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG- 219 (264)
T PRK08227 153 MVRDARYFSLATRIAAEMGAQIIKTYY-----------VE-EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG- 219 (264)
T ss_pred cCchHHHHHHHHHHHHHHcCCEEecCC-----------CH-HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-
Confidence 123344455566667888999987511 11 34556666788998877774 43 3456788877
Q ss_pred ccEEEechHhhhCCcHH
Q 017448 319 TDLVAYGRSFLANPDLP 335 (371)
Q Consensus 319 ~D~V~~gR~~ladP~l~ 335 (371)
+-.|++||=.+..|+-.
T Consensus 220 a~Gv~~GRNIfQ~~~p~ 236 (264)
T PRK08227 220 ASGVDMGRNIFQSEHPV 236 (264)
T ss_pred CceeeechhhhccCCHH
Confidence 99999999999998743
No 299
>PLN02858 fructose-bisphosphate aldolase
Probab=95.73 E-value=0.53 Score=54.04 Aligned_cols=194 Identities=12% Similarity=0.069 Sum_probs=115.7
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCcc-ccCCCCC---CC-CCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRV-STYGFQP---NG-EAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~-~~~~~~~---~~-~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
.+..+.++++..+.++++++|+...... ....+.. .. ...--|-.+.++ .. .+
T Consensus 1124 ~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLD---------Hg--~~----------- 1181 (1378)
T PLN02858 1124 LEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHFD---------HG--TS----------- 1181 (1378)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEECC---------CC--CC-----------
Confidence 4677888999999999999999753221 0000000 00 000011111111 11 12
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~~ 240 (371)
.+..++|.++||+-|-|.+.| =++|...++..|+++-.+.. |-. -|| ++...++.
T Consensus 1182 ~~~i~~ai~~Gf~SVM~DgS~--------------------l~~eeNi~~t~~vv~~Ah~~-gv~VEaElG-~v~g~e~~ 1239 (1378)
T PLN02858 1182 KHELLEALELGFDSVMVDGSH--------------------LSFTENISYTKSISSLAHSK-GLMVEAELG-RLSGTEDG 1239 (1378)
T ss_pred HHHHHHHHHhCCCEEEEeCCC--------------------CCHHHHHHHHHHHHHHHHHc-CCEEEEEec-ccCCccCC
Confidence 244667778899999988766 14788899999999988763 211 122 12211111
Q ss_pred -C--cC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCC--CCCCchhhHhHHHhc---CCCeEeeCC--CCHHH
Q 017448 241 -M--EA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDK--LDAPPYSLLPMRKAF---DGTFIASGG--YNRDD 309 (371)
Q Consensus 241 -~--~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~--~~~~~~~~~~ik~~~---~~pVi~~Gg--it~~~ 309 (371)
. +. ....+.+++.+|++ +-|||.|-++-++.+..++. +.-+.+.+++|++.+ ++|++.=|+ +..++
T Consensus 1240 ~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~~~~ 1316 (1378)
T PLN02858 1240 LTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLPESL 1316 (1378)
T ss_pred ccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCCHHH
Confidence 0 00 00224555666654 56999999998887666532 233456789999999 799665554 57889
Q ss_pred HHHHHHcCCccEEEechHhhh
Q 017448 310 GNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 310 a~~~l~~g~~D~V~~gR~~la 330 (371)
..++++.| +-=|=++..+..
T Consensus 1317 ~~~ai~~G-i~KiNi~T~~~~ 1336 (1378)
T PLN02858 1317 IKECIENG-VRKFNVNTEVRT 1336 (1378)
T ss_pred HHHHHHcC-CeEEEeCHHHHH
Confidence 99999999 555667666543
No 300
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=95.72 E-value=0.1 Score=46.02 Aligned_cols=115 Identities=11% Similarity=0.127 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEE-EEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGI-RLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~v-rl~~~~~~~~ 242 (371)
++-|+-|++.|+-||.+++ .+=|++||+.+.-..||+ |-. +++. +
T Consensus 2 ~~mA~Aa~~gGA~giR~~~--------------------------------~~dI~aik~~v~lPIIGi~K~~-y~~~-~ 47 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG--------------------------------VEDIRAIKKAVDLPIIGIIKRD-YPDS-D 47 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES--------------------------------HHHHHHHHTTB-S-EEEE-B-S-BTTS-S
T ss_pred HHHHHHHHHCCceEEEcCC--------------------------------HHHHHHHHHhcCCCEEEEEecc-CCCC-C
Confidence 4556777889999999753 445889999984324675 422 1111 1
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
...+. +.+-+++|.++|+|.|-+....... + .....+++.||+.. +..-..+ |.+++..+.+.| +|+
T Consensus 48 --V~ITP--T~~ev~~l~~aGadIIAlDaT~R~R---p-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G-~D~ 115 (192)
T PF04131_consen 48 --VYITP--TLKEVDALAEAGADIIALDATDRPR---P-ETLEELIREIKEKY---QLVMADISTLEEAINAAELG-FDI 115 (192)
T ss_dssp ----BS---SHHHHHHHHHCT-SEEEEE-SSSS----S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT--SE
T ss_pred --eEECC--CHHHHHHHHHcCCCEEEEecCCCCC---C-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcC-CCE
Confidence 11111 3445677888999998875432221 2 23445778888887 3344566 899999999999 999
Q ss_pred EEe
Q 017448 322 VAY 324 (371)
Q Consensus 322 V~~ 324 (371)
|+-
T Consensus 116 I~T 118 (192)
T PF04131_consen 116 IGT 118 (192)
T ss_dssp EE-
T ss_pred EEc
Confidence 984
No 301
>PRK14057 epimerase; Provisional
Probab=95.68 E-value=0.25 Score=45.87 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=83.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 017448 148 PRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA 227 (371)
Q Consensus 148 ~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~ 227 (371)
.+-|.. +.++.++.|+ ++|+|-|-+|.=. +..+.++++.||+. |.
T Consensus 80 vHLMV~-~P~~~i~~~~-------~aGad~It~H~Ea--------------------------~~~~~~~l~~Ir~~-G~ 124 (254)
T PRK14057 80 VHLMVA-DQWTAAQACV-------KAGAHCITLQAEG--------------------------DIHLHHTLSWLGQQ-TV 124 (254)
T ss_pred EEeeeC-CHHHHHHHHH-------HhCCCEEEEeecc--------------------------ccCHHHHHHHHHHc-CC
Confidence 344543 3444555554 4799999998742 01146778888876 32
Q ss_pred -------c-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc--CCCcccCCCCCCCCchhh---HhHHHh
Q 017448 228 -------E-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL--EPRLFNAQDKLDAPPYSL---LPMRKA 294 (371)
Q Consensus 228 -------~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~~~~~~~~~---~~ik~~ 294 (371)
+ ..|+=++|. .+.+....++. -+|+|-+. .|.+... ......+ +++|+.
T Consensus 125 k~~~~~~~~kaGlAlnP~---------Tp~e~i~~~l~-----~vD~VLvMtV~PGfgGQ----~Fi~~~l~KI~~lr~~ 186 (254)
T PRK14057 125 PVIGGEMPVIRGISLCPA---------TPLDVIIPILS-----DVEVIQLLAVNPGYGSK----MRSSDLHERVAQLLCL 186 (254)
T ss_pred CcccccccceeEEEECCC---------CCHHHHHHHHH-----hCCEEEEEEECCCCCch----hccHHHHHHHHHHHHH
Confidence 1 368888883 35554444443 26666442 3333211 1122222 233332
Q ss_pred c-----CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 295 F-----DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 295 ~-----~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
. +..+-+-||++.+.+.++.+.| +|.+.+|++++.++++.+.+
T Consensus 187 ~~~~~~~~~IeVDGGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i 234 (254)
T PRK14057 187 LGDKREGKIIVIDGSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENT 234 (254)
T ss_pred HHhcCCCceEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHH
Confidence 2 2447788999999999999999 99999999999888864443
No 302
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.68 E-value=0.026 Score=51.56 Aligned_cols=46 Identities=22% Similarity=0.442 Sum_probs=38.2
Q ss_pred hHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcH
Q 017448 288 LLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDL 334 (371)
Q Consensus 288 ~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l 334 (371)
.+.+++..+.|++.+||| +.++|+++++.| +|.|.+|-.+-.||++
T Consensus 174 ~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 174 IAAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH-H
T ss_pred HHHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcchH
Confidence 344555567999999999 899999999999 9999999999999973
No 303
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.64 E-value=0.05 Score=49.29 Aligned_cols=74 Identities=18% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 251 LGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+..++++.+++.|+++||+..-... .......++.|++.+++||+.-|.+ ++++++.+++.| +|+|.++-..+
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~-----~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~ 105 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKY-----FQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAAL 105 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccc-----cCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccC
Confidence 3567999999999999998643111 1123456788999999999877666 778999999999 99999876655
Q ss_pred h
Q 017448 330 A 330 (371)
Q Consensus 330 a 330 (371)
.
T Consensus 106 ~ 106 (217)
T cd00331 106 D 106 (217)
T ss_pred C
Confidence 4
No 304
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.62 E-value=0.12 Score=46.93 Aligned_cols=73 Identities=11% Similarity=0.015 Sum_probs=45.7
Q ss_pred HhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH------hcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 259 LNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK------AFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 259 l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~------~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..+.|+|+|+++.+.|.... ........+..+++ ....-|=++.|++.+....+.+-..++=|.+|..++++-
T Consensus 140 A~~~GAd~VELhTG~Ya~a~-~~~~~~~el~~i~~aa~~a~~~GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 140 AKEVGADRVELHTGPYANAY-DKAEREAELERIAKAAKLARELGLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHhCcCEEEEechhhhcCC-CchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 34557788888877664332 11111111222222 234556677778999888887777799999999998864
No 305
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.61 E-value=0.17 Score=47.15 Aligned_cols=78 Identities=19% Similarity=0.069 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.+..++-++.++++|++.|-+.. .+ ...++.|.+.+++|+|+.|.=..-+..-++- -|++++...
T Consensus 159 a~~~i~~A~a~e~AGA~~ivlE~----------vp-~~~a~~It~~l~iP~iGIGaG~~~dGQvlV~---~D~lG~~~~- 223 (263)
T TIGR00222 159 AKKLLEDALALEEAGAQLLVLEC----------VP-VELAAKITEALAIPVIGIGAGNVCDGQILVM---HDALGITVG- 223 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC----------Cc-HHHHHHHHHhCCCCEEeeccCCCCCceeeeH---HhhcCCCCC-
Confidence 45677889999999999887622 22 4778999999999998776421111211111 355555433
Q ss_pred hhCCcHHHHHHhCC
Q 017448 329 LANPDLPKRFELNA 342 (371)
Q Consensus 329 ladP~l~~k~~~g~ 342 (371)
..|-++++..+..
T Consensus 224 -~~pkf~k~y~~~~ 236 (263)
T TIGR00222 224 -HIPKFAKNYLAET 236 (263)
T ss_pred -CCCCchHHHhhHH
Confidence 2677777766653
No 306
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.61 E-value=0.44 Score=42.26 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+++.+-++.+.++|++.||+..-. . -..+.++.+++..++-.|+.-.-.
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~~----------------~-----------~~~~~i~~l~~~~~~~~iGag~v~---- 64 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRT----------------P-----------GALEAIRALRKEFPEALIGAGTVL---- 64 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCC----------------h-----------hHHHHHHHHHHHCCCCEEEEEeCC----
Confidence 445666778889999999986332 0 035688888888763234432211
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
+. +-++.+.+.|.++++. + .......+ .++..+.+++. |--|++++.++++.| +|
T Consensus 65 -------~~----~~~~~a~~~Ga~~i~~--p---------~~~~~~~~-~~~~~~~~~i~-gv~t~~e~~~A~~~G-ad 119 (190)
T cd00452 65 -------TP----EQADAAIAAGAQFIVS--P---------GLDPEVVK-AANRAGIPLLP-GVATPTEIMQALELG-AD 119 (190)
T ss_pred -------CH----HHHHHHHHcCCCEEEc--C---------CCCHHHHH-HHHHcCCcEEC-CcCCHHHHHHHHHCC-CC
Confidence 12 2334566789999983 2 12223333 34445667654 444999999999998 99
Q ss_pred EEEechHhhhCCcHHHHHHhC
Q 017448 321 LVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 321 ~V~~gR~~ladP~l~~k~~~g 341 (371)
+|.+--.-..-|++++.++.-
T Consensus 120 ~i~~~p~~~~g~~~~~~l~~~ 140 (190)
T cd00452 120 IVKLFPAEAVGPAYIKALKGP 140 (190)
T ss_pred EEEEcCCcccCHHHHHHHHhh
Confidence 999842111245667776653
No 307
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.60 E-value=1.4 Score=42.45 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=71.5
Q ss_pred chhhhhHHHHHHHHHHHHHhCCcccEEEE---cCccCcCcCC------CCChHHHHHHHHHHHhhcC----ccEEEEcCC
Q 017448 206 SLENRCRFALEIVEAVVNEIGAERVGIRL---SPHANYMEAQ------DSNPEALGLYMAKALNKYQ----ILYLHILEP 272 (371)
Q Consensus 206 s~enR~r~~~eiv~avR~~vg~~~i~vrl---~~~~~~~~~~------~~~~~e~~~~la~~l~~~G----vd~l~v~~~ 272 (371)
++|...+...++++..+.. |- .|-.-| ...++..... .....+++.+|++ +.| +|.|.++-+
T Consensus 133 ~~eeNi~~T~~vve~Ah~~-gi-~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiG 207 (340)
T cd00453 133 SLQENIEICSKYLERMSKI-GM-TLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFG 207 (340)
T ss_pred CHHHHHHHHHHHHHHHHHc-CC-EEEEEEEecCCccCCcccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecC
Confidence 4777888999999888764 32 222222 2111110000 0123566666665 557 999999888
Q ss_pred CcccCCCC--CCCCchhhHhHHHhc---------CCCeEeeCC--CCHHHHHHHHHcCCccEEEechH
Q 017448 273 RLFNAQDK--LDAPPYSLLPMRKAF---------DGTFIASGG--YNRDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 273 ~~~~~~~~--~~~~~~~~~~ik~~~---------~~pVi~~Gg--it~~~a~~~l~~g~~D~V~~gR~ 327 (371)
+....++. +.-+...++.|++.+ ++|++.=|+ +..++..++++.| +-=|=++..
T Consensus 208 t~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Te 274 (340)
T cd00453 208 NVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYG-VVKMNIDTD 274 (340)
T ss_pred ccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcC-CeEEEcccH
Confidence 76655532 233456788899988 788665555 5778899999999 444555544
No 308
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.53 E-value=0.12 Score=48.29 Aligned_cols=78 Identities=22% Similarity=0.094 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.++.++-++.++++|++.|-+.. .+ ...++.|.+.+++|+|+.|.=..-+..-++- .|++++...
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~----------v~-~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~---~D~lG~~~~- 224 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC----------VP-AELAKEITEALSIPTIGIGAGPDCDGQVLVW---HDMLGLFSG- 224 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC----------CC-HHHHHHHHHhCCCCEEEeccCCCCCceeeeH---HhhcCCCCC-
Confidence 55788889999999999987622 12 2578899999999998776421112222221 355555322
Q ss_pred hhCCcHHHHHHhCC
Q 017448 329 LANPDLPKRFELNA 342 (371)
Q Consensus 329 ladP~l~~k~~~g~ 342 (371)
.-|.++++..+..
T Consensus 225 -~~pkf~k~~~~~~ 237 (264)
T PRK00311 225 -FKPKFVKRYADLA 237 (264)
T ss_pred -CCCCchHhHhhhH
Confidence 2677777776654
No 309
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.51 E-value=0.26 Score=45.00 Aligned_cols=73 Identities=15% Similarity=0.036 Sum_probs=45.7
Q ss_pred HhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH------hcCCCeEeeCCCCHHHHHHHHHcCC-ccEEEechHhhhC
Q 017448 259 LNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK------AFDGTFIASGGYNRDDGNKAVAENY-TDLVAYGRSFLAN 331 (371)
Q Consensus 259 l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~------~~~~pVi~~Ggit~~~a~~~l~~g~-~D~V~~gR~~lad 331 (371)
..+.|+|+|+++.+.|.... .......-++.+++ ....-|-++.|++.+....+...-. ++=|.+|..++++
T Consensus 140 A~~~GAd~VELhTG~YA~a~-~~~~~~~el~~i~~aa~~A~~lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~ 218 (237)
T TIGR00559 140 AAEVGADRIEIHTGPYANAY-NKKEMAEELQRIVKASVHAHSLGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIAD 218 (237)
T ss_pred HHHhCcCEEEEechhhhcCC-CchhHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHH
Confidence 34557888888887765432 11111111222332 2345566777789998887776654 8889999999886
Q ss_pred C
Q 017448 332 P 332 (371)
Q Consensus 332 P 332 (371)
-
T Consensus 219 A 219 (237)
T TIGR00559 219 A 219 (237)
T ss_pred H
Confidence 5
No 310
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.40 E-value=0.21 Score=47.00 Aligned_cols=106 Identities=11% Similarity=0.032 Sum_probs=66.6
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCC-cccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGA-ERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~-~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-+-+- ..|...+. .+.|+.+|+.++. ..|.|-.+ +.+++ .+..++|+|.|-+
T Consensus 145 ~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~------------tleea----~~A~~~GaDiI~L 208 (273)
T PRK05848 145 SNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECE------------SLEEA----KNAMNAGADIVMC 208 (273)
T ss_pred ccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeC------------CHHHH----HHHHHcCCCEEEE
Confidence 45666554432 34544443 5778888888874 34555333 34433 3344689998876
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHh----c-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKA----F-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~----~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
... ....++++.+. . ++.+.+.||+|++.+.++.+.| +|+|++|....
T Consensus 209 Dn~-----------~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~ 261 (273)
T PRK05848 209 DNM-----------SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSG-VDAISSGSLIH 261 (273)
T ss_pred CCC-----------CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 332 12222222221 1 3449999999999999999998 99999998765
No 311
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=95.35 E-value=0.12 Score=51.48 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=66.2
Q ss_pred HHHHHHHHHHh-------CCc-ccEEEEcCccCcCcC--------CCCChHHHHHHHHHHH-hhcCccEEEEcCCCcccC
Q 017448 215 LEIVEAVVNEI-------GAE-RVGIRLSPHANYMEA--------QDSNPEALGLYMAKAL-NKYQILYLHILEPRLFNA 277 (371)
Q Consensus 215 ~eiv~avR~~v-------g~~-~i~vrl~~~~~~~~~--------~~~~~~e~~~~la~~l-~~~Gvd~l~v~~~~~~~~ 277 (371)
.+.|+.||+++ |++ .|++.....+.+.+. ....+.++++++.+.| ++.++.||+ +|
T Consensus 213 ~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iE--dP----- 285 (408)
T cd03313 213 EEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIE--DP----- 285 (408)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEE--eC-----
Confidence 45556666666 766 577777544322111 1123567777877765 458888877 44
Q ss_pred CCCCCCCchhhHhHHHhc--CCCeEeeCCC--CHHHHHHHHHcCCccEEEe
Q 017448 278 QDKLDAPPYSLLPMRKAF--DGTFIASGGY--NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 278 ~~~~~~~~~~~~~ik~~~--~~pVi~~Ggi--t~~~a~~~l~~g~~D~V~~ 324 (371)
-...++...+.+++.+ ++||++...+ +++++.++++.+.||.|.+
T Consensus 286 --l~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~i 334 (408)
T cd03313 286 --FDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLI 334 (408)
T ss_pred --CCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEE
Confidence 1233456677789988 6777666544 6999999999999999975
No 312
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.35 E-value=0.39 Score=45.65 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.-+|+.+.++||++|-+.+.. ++-=+ -..| ||-+ . ..-.++.++.|.+++. -||.+.+-.
T Consensus 25 ~lSAri~e~aGf~ai~~ss~~---va~sl-----G~pD--~g~l-~-~~e~~~~~~~I~~~~~-lPv~aD~d~------- 84 (290)
T TIGR02321 25 PLVAKLAEQAGFGGIWGSGFE---LSASY-----AVPD--ANIL-S-MSTHLEMMRAIASTVS-IPLIADIDT------- 84 (290)
T ss_pred HHHHHHHHHcCCCEEEECHHH---HHHHC-----CCCC--cccC-C-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 468899999999999975432 22001 1234 3321 1 1223555555555552 278776643
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC----CC---CCCCchhhHhHHHhc---C-CCeEeeCCC-------
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ----DK---LDAPPYSLLPMRKAF---D-GTFIASGGY------- 305 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~----~~---~~~~~~~~~~ik~~~---~-~pVi~~Ggi------- 305 (371)
+.+++. ...+.++.++++|+..|+|-.......- .. -.....+..+||.+. . .+++.+.+.
T Consensus 85 GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~ 163 (290)
T TIGR02321 85 GFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_pred CCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Confidence 223444 4677889999999999999664322110 00 011112344444332 2 334444332
Q ss_pred ----CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCC
Q 017448 306 ----NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAA 343 (371)
Q Consensus 306 ----t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 343 (371)
..+.++...+.| +|.|.+ -+.+.+|+.+.++.+..+
T Consensus 164 g~deAI~Ra~aY~eAG-AD~ifv-~~~~~~~~ei~~~~~~~~ 203 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAG-ADAILI-HSRQKTPDEILAFVKSWP 203 (290)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEe-cCCCCCHHHHHHHHHhcC
Confidence 124456677777 999998 234688999999888543
No 313
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.32 E-value=0.31 Score=46.15 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+-..+..+.|.|||-+.+.-|. |.+ =+.+.|.+++..+++.+. |.-+|.+=++
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE----~~~-----------Ls~~Er~~~~~~~~~~~~---~~~~vi~gv~-------- 75 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGE----SPT-----------LSHEEHKKVIEFVVDLVN---GRVPVIAGTG-------- 75 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcc----ccc-----------CCHHHHHHHHHHHHHHhC---CCCeEEEeCC--------
Confidence 33444555799999998765541 111 134667666555555432 2224443222
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHHHHc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKAVAE 316 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~l~~ 316 (371)
....++++++++..++.|+|.+-+..|.+..+. ......+.+.|.++++.||+. +|. ++++..+++.+.
T Consensus 76 --~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~--~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 76 --SNATEEAISLTKFAEDVGADGFLVVTPYYNKPT--QEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred --CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 234677999999999999999999877654322 112234566777778889662 343 478888888754
Q ss_pred CCccEEEe
Q 017448 317 NYTDLVAY 324 (371)
Q Consensus 317 g~~D~V~~ 324 (371)
. .++++
T Consensus 152 ~--~v~gi 157 (285)
T TIGR00674 152 P--NIVAI 157 (285)
T ss_pred C--CEEEE
Confidence 4 45554
No 314
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.29 E-value=0.24 Score=47.27 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+.+.+-+++..+.|.|||-+.+.-|-.. + =|.+.|.+ +++.+++.++.. ||.+=.+
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~--~-------------Ls~eEr~~----v~~~~v~~~~grvpviaG~g---- 81 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESP--T-------------LTLEERKE----VLEAVVEAVGGRVPVIAGVG---- 81 (299)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCccch--h-------------cCHHHHHH----HHHHHHHHHCCCCcEEEecC----
Confidence 4566667778899999999887765211 1 13456554 466666666543 4433222
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee------CC-CCHHHHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS------GG-YNRDDGNK 312 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~------Gg-it~~~a~~ 312 (371)
....++++++++..++.|+|.+-+..|.|..+. ......+.+.|.++++.|+|.- |. ++++...+
T Consensus 82 ------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~--~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~ 153 (299)
T COG0329 82 ------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPS--QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIAR 153 (299)
T ss_pred ------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCC--hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHH
Confidence 234567999999999999999998887765443 1123345667788888886532 33 36777777
Q ss_pred HHHc
Q 017448 313 AVAE 316 (371)
Q Consensus 313 ~l~~ 316 (371)
+-+.
T Consensus 154 la~~ 157 (299)
T COG0329 154 LAEH 157 (299)
T ss_pred HhcC
Confidence 7663
No 315
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.26 E-value=0.33 Score=46.05 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
.+.+-.+...+.|.|||-+.+.-|. |. -=|.+.|.+++..+++. +..+ +|.+=++
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~Gs~GE----~~-----------~ls~~Er~~~~~~~~~~----~~~~~~vi~gv~----- 78 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVVGTTGE----SP-----------TLTHEEHEELIRAVVEA----VNGRVPVIAGTG----- 78 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCcCCc----cc-----------cCCHHHHHHHHHHHHHH----hCCCCcEEeecC-----
Confidence 3444445566699999998766542 11 11356776665555554 4333 4443222
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKA 313 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~ 313 (371)
....++++++++..++.|+|.+-+..|.+.... ......+.+.|.+.++.||+. +|. ++++...++
T Consensus 79 -----~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~--~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L 151 (292)
T PRK03170 79 -----SNSTAEAIELTKFAEKAGADGALVVTPYYNKPT--QEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARL 151 (292)
T ss_pred -----CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCC--HHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHH
Confidence 224677899999999999999998777654322 112234556677777888663 343 378877877
Q ss_pred HHcC
Q 017448 314 VAEN 317 (371)
Q Consensus 314 l~~g 317 (371)
.+..
T Consensus 152 ~~~p 155 (292)
T PRK03170 152 AEHP 155 (292)
T ss_pred HcCC
Confidence 5433
No 316
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.24 E-value=0.25 Score=45.61 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC--
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN-- 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~-- 239 (371)
+..+.+++..++|++||.|-.+. -..+.|+++|++. .+|.-|+....-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iED~~----------------------------~~~~~i~ai~~a~--i~ViaRtd~~pq~~ 139 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIEGGE----------------------------WHIETLQMLTAAA--VPVIAHTGLTPQSV 139 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEcCcH----------------------------HHHHHHHHHHHcC--CeEEEEeCCchhhh
Confidence 35778888889999999986541 1345667776653 356677765210
Q ss_pred -----cCcCC-CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHH
Q 017448 240 -----YMEAQ-DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKA 313 (371)
Q Consensus 240 -----~~~~~-~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~ 313 (371)
+...+ .....+++++-++.++++|+|.|-+.. . ....++.|.+.+++|++++|.=.--+.+-+
T Consensus 140 ~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~----------~-~~e~~~~i~~~~~~P~~~~gag~~~dgq~l 208 (240)
T cd06556 140 NTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMEC----------V-PVELAKQITEALAIPLAGIGAGSGTDGQFL 208 (240)
T ss_pred hccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcC----------C-CHHHHHHHHHhCCCCEEEEecCcCCCceEE
Confidence 00000 123467788889999999999887632 1 356788899999999887764211111111
Q ss_pred HHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 314 VAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 314 l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
. ..|++++...+ .|.++++..+.
T Consensus 209 v---~~d~lg~~~~~--~p~f~~~~~~~ 231 (240)
T cd06556 209 V---LADAFGITGGH--IPKFAKNFHAE 231 (240)
T ss_pred e---HHhhhcccCCC--CCchHHHHhhh
Confidence 1 13445554443 67777766543
No 317
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.24 E-value=0.46 Score=43.00 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=36.2
Q ss_pred chhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcH
Q 017448 285 PYSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDL 334 (371)
Q Consensus 285 ~~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l 334 (371)
..+++.++..++ ++++.+||++.+++.+.++.| +.+.+|+..|.+.++
T Consensus 143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~ 191 (212)
T PRK05718 143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDA 191 (212)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcch
Confidence 356677777765 789999999999999999999 445555666665554
No 318
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.22 E-value=0.43 Score=45.41 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+-+|+.+.++||+++-+.+. .++-. .--..| +| +.. ..-.++.++.|.+++. -||.+.+-.
T Consensus 26 a~SArl~e~aGf~ai~~sg~---~~~as----~lG~pD--~g-~l~-~~e~~~~~~~I~~~~~-lPv~aD~dt------- 86 (294)
T TIGR02319 26 ALSAKVIQQAGFPAVHMTGS---GTSAS----MLGLPD--LG-FTS-VSEQAINAKNIVLAVD-VPVIMDADA------- 86 (294)
T ss_pred HHHHHHHHHcCCCEEEecHH---HHHHH----HcCCCC--cC-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 57899999999999986432 22211 011223 12 111 1123455555555552 278776643
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC-CC-CC---CCCchhhHhHHHhc---C-CCeEeeCC--------C-
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNA-QD-KL---DAPPYSLLPMRKAF---D-GTFIASGG--------Y- 305 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~-~~-~~---~~~~~~~~~ik~~~---~-~pVi~~Gg--------i- 305 (371)
+.+++.+ ..+.+++++++|+..|+|......+. .. .. .+...+.++||.+. + .+++.+.+ +
T Consensus 87 GyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~d 165 (294)
T TIGR02319 87 GYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLD 165 (294)
T ss_pred CCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHH
Confidence 2244444 57789999999999999966432110 00 01 11123444444332 3 23544433 2
Q ss_pred -CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCC
Q 017448 306 -NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNA 342 (371)
Q Consensus 306 -t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 342 (371)
..+.+....+.| +|+|.+- .+.+++.++++.+..
T Consensus 166 eaI~Ra~aY~eAG-AD~ifi~--~~~~~~ei~~~~~~~ 200 (294)
T TIGR02319 166 EAIRRSREYVAAG-ADCIFLE--AMLDVEEMKRVRDEI 200 (294)
T ss_pred HHHHHHHHHHHhC-CCEEEec--CCCCHHHHHHHHHhc
Confidence 134566677777 9999993 478999999988864
No 319
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.22 E-value=0.29 Score=44.89 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=32.1
Q ss_pred cCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhC
Q 017448 295 FDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 295 ~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.++||++.||+ +.++..++.+.| +|.|.+|+++...
T Consensus 181 ~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g 217 (228)
T PRK04128 181 GDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG 217 (228)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence 57999999999 899999998876 9999999998654
No 320
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.22 E-value=0.76 Score=44.45 Aligned_cols=149 Identities=12% Similarity=-0.088 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccC-----CCCCCCCchhhhhHH----HHHHHHH---HHHHhCCcccE
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVND-----RTDQYGGSLENRCRF----ALEIVEA---VVNEIGAERVG 231 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~-----R~D~yGgs~enR~r~----~~eiv~a---vR~~vg~~~i~ 231 (371)
.+..+.+..+||-+|++..-.-.-+.|--.|.... |.-+ ..++.|+.-+ +...++. .++.. +.+|.
T Consensus 26 ~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~-~~~~in~~g~~n~g~~~~~~~i~~~~~~~-~~pvi 103 (325)
T cd04739 26 LDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAE-ALSYFPEYGRYNLGPEEYLELIRRAKRAV-SIPVI 103 (325)
T ss_pred HHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcC-cccccccccccCcCHHHHHHHHHHHHhcc-CCeEE
Confidence 45556678899999998764311101111111000 1111 1223333222 2233333 33333 23777
Q ss_pred EEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCC-----CchhhHhHHHhcCCCeEee--CC
Q 017448 232 IRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDA-----PPYSLLPMRKAFDGTFIAS--GG 304 (371)
Q Consensus 232 vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~-----~~~~~~~ik~~~~~pVi~~--Gg 304 (371)
+-++. .+.++..++++.++++|+|+|++.-............ ....++.+++.+++||++= ..
T Consensus 104 ~si~g----------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 104 ASLNG----------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred EEeCC----------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 76653 2356778999999999999998865431111000000 1235677888889997743 34
Q ss_pred C-CHH-HHHHHHHcCCccEEEec
Q 017448 305 Y-NRD-DGNKAVAENYTDLVAYG 325 (371)
Q Consensus 305 i-t~~-~a~~~l~~g~~D~V~~g 325 (371)
+ +.. .++.+.+.| +|.|.+.
T Consensus 174 ~~~~~~~a~~l~~~G-adgi~~~ 195 (325)
T cd04739 174 FSALAHMAKQLDAAG-ADGLVLF 195 (325)
T ss_pred ccCHHHHHHHHHHcC-CCeEEEE
Confidence 4 334 445555555 8888763
No 321
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.20 E-value=0.094 Score=47.15 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+.+++..+++.|.+.|+..++|+..+ +.....++.+++.++.-+++.|.+ |.++++++++.| ++|+..
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t--------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fivs-- 86 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT--------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIVS-- 86 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC--------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEC--
Confidence 46778999999999999999997642 223456778888776557888887 999999999999 999854
Q ss_pred HhhhCCcHHHHHHh
Q 017448 327 SFLANPDLPKRFEL 340 (371)
Q Consensus 327 ~~ladP~l~~k~~~ 340 (371)
|. .||++.+..++
T Consensus 87 P~-~~~~v~~~~~~ 99 (204)
T TIGR01182 87 PG-LTPELAKHAQD 99 (204)
T ss_pred CC-CCHHHHHHHHH
Confidence 32 38888877665
No 322
>PRK00077 eno enolase; Provisional
Probab=95.17 E-value=0.16 Score=50.92 Aligned_cols=102 Identities=11% Similarity=0.183 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHh-------CCc-ccEEEEcCccCcCcCCC-----CChHHHH-HHHHHHHhhcCccEEEEcCCCcccCCC
Q 017448 214 ALEIVEAVVNEI-------GAE-RVGIRLSPHANYMEAQD-----SNPEALG-LYMAKALNKYQILYLHILEPRLFNAQD 279 (371)
Q Consensus 214 ~~eiv~avR~~v-------g~~-~i~vrl~~~~~~~~~~~-----~~~~e~~-~~la~~l~~~Gvd~l~v~~~~~~~~~~ 279 (371)
..+.|+.||+++ |++ .|++.....+.+.+..+ ..+.++. ..+++.+++.++.||+ +|-
T Consensus 215 ~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iE--dPl------ 286 (425)
T PRK00077 215 NEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIE--DGL------ 286 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEE--cCC------
Confidence 355666666665 776 57777754322211101 1233344 4456666778888887 441
Q ss_pred CCCCCchhhHhHHHhc--CCCeEeeCCC--CHHHHHHHHHcCCccEEEe
Q 017448 280 KLDAPPYSLLPMRKAF--DGTFIASGGY--NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 280 ~~~~~~~~~~~ik~~~--~~pVi~~Ggi--t~~~a~~~l~~g~~D~V~~ 324 (371)
...++...+.+++.+ ++||++...+ ++++..++++.+.||.|.+
T Consensus 287 -~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~i 334 (425)
T PRK00077 287 -DENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILI 334 (425)
T ss_pred -CCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEe
Confidence 233456677899998 5787666654 5999999999999999975
No 323
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.12 E-value=0.28 Score=46.86 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC
Q 017448 219 EAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT 298 (371)
Q Consensus 219 ~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p 298 (371)
+.+|+..+ .++++.+... . ..+...+.++.+++.|++.|.++....... ....+..++++++.+++|
T Consensus 108 ~~i~~~~~-~~~~~ql~~~--------~-~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~---~~~~~~~i~~l~~~~~~p 174 (299)
T cd02809 108 EEVAAAAP-GPRWFQLYVP--------R-DREITEDLLRRAEAAGYKALVLTVDTPVLG---RRLTWDDLAWLRSQWKGP 174 (299)
T ss_pred HHHHHhcC-CCeEEEEeec--------C-CHHHHHHHHHHHHHcCCCEEEEecCCCCCC---CCCCHHHHHHHHHhcCCC
Confidence 34444332 4677776541 1 234456678888889999998865432111 113456788999999999
Q ss_pred eEeeCCCCHHHHHHHHHcCCccEEEe
Q 017448 299 FIASGGYNRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 299 Vi~~Ggit~~~a~~~l~~g~~D~V~~ 324 (371)
|++-+-.+.+++..+.+.| +|+|.+
T Consensus 175 vivK~v~s~~~a~~a~~~G-~d~I~v 199 (299)
T cd02809 175 LILKGILTPEDALRAVDAG-ADGIVV 199 (299)
T ss_pred EEEeecCCHHHHHHHHHCC-CCEEEE
Confidence 9887767999999999988 999876
No 324
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.11 E-value=0.29 Score=47.44 Aligned_cols=104 Identities=12% Similarity=-0.044 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-CC-CCCC---CCc
Q 017448 211 CRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFN-AQ-DKLD---APP 285 (371)
Q Consensus 211 ~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~-~~-~~~~---~~~ 285 (371)
....++.+..+++.++ .+|.+.++.. +.++..++++.++++|+|+|++....... .. .... ...
T Consensus 86 ~d~~~~~i~~~~~~~~-~pvi~sI~g~----------~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~ 154 (334)
T PRK07565 86 PEEYLELIRRAKEAVD-IPVIASLNGS----------SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYL 154 (334)
T ss_pred HHHHHHHHHHHHHhcC-CcEEEEeccC----------CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHH
Confidence 4445666667776663 3788877642 34567889999999999999985421000 00 0000 012
Q ss_pred hhhHhHHHhcCCCeEee--CCC-CHHHHHHHHHcCCccEEEec
Q 017448 286 YSLLPMRKAFDGTFIAS--GGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 286 ~~~~~ik~~~~~pVi~~--Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..++.|++.+++||++- +++ +..+..+++++..+|+|.+.
T Consensus 155 eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 155 DILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 34577888889998865 444 45555555555559988763
No 325
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.10 E-value=0.1 Score=47.30 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+.+++..+++.|.+.|++.++|+..+ +.....++.+++.++.-+|+.|-+ +.++++.+++.| +||+..
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~--------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG-A~Fivs-- 93 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRT--------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG-AQFIVS-- 93 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC-CCEEEC--
Confidence 46789999999999999999997421 223456788888887667888887 999999999999 898875
Q ss_pred HhhhCCcHHHHHHh
Q 017448 327 SFLANPDLPKRFEL 340 (371)
Q Consensus 327 ~~ladP~l~~k~~~ 340 (371)
+ ..+|++.+..++
T Consensus 94 P-~~~~~vi~~a~~ 106 (212)
T PRK05718 94 P-GLTPPLLKAAQE 106 (212)
T ss_pred C-CCCHHHHHHHHH
Confidence 2 256677776655
No 326
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.09 E-value=0.44 Score=43.54 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=45.0
Q ss_pred HhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH------hcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 259 LNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK------AFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 259 l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~------~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..+.|+|+|+++.+.|.... .. ....-++.++. ....-|-++.|++.+....+..--.++=|.+|..++++-
T Consensus 143 A~~~GAd~VELhTG~yA~a~-~~-~~~~el~~~~~aa~~a~~lGL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 143 AAEVGADRIELHTGPYADAK-TE-AEAAELERIAKAAKLAASLGLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHhCcCEEEEechhhhcCC-Cc-chHHHHHHHHHHHHHHHHcCCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 34557788888877665432 11 11112222322 234557777778998888866656688899999998864
No 327
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.6 Score=43.08 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC---cccEEEEcCccCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA---ERVGIRLSPHANY 240 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~---~~i~vrl~~~~~~ 240 (371)
..+++.+.+.|.|.|-+|+..| .+.++++++.... ..++|-.......
T Consensus 79 ~~~~~~~~~~g~d~vtvH~~~G-----------------------------~~~~~~~~e~~~~~~~~vl~vT~lts~~~ 129 (240)
T COG0284 79 ALAAKAAADLGADAVTVHAFGG-----------------------------FDMLRAAKEALEAGGPFVLAVTSLTSMGE 129 (240)
T ss_pred HHHHHHhhhcCCcEEEEeCcCC-----------------------------HHHHHHHHHHHhhcCceEEEEEeCCCchh
Confidence 4555557889999999998775 3455555555533 3455544332111
Q ss_pred C---cC-CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCCCH-------H
Q 017448 241 M---EA-QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGYNR-------D 308 (371)
Q Consensus 241 ~---~~-~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggit~-------~ 308 (371)
. .. ......+...++++....+|+|.+-++ ....+.+|+..+ .-.+.+=||.+ .
T Consensus 130 ~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~--------------~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~ 195 (240)
T COG0284 130 LQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS--------------AEEVAAIREILGPDFLILTPGIGAGSQGGDQG 195 (240)
T ss_pred hhhhhccccchHHHHHHHHHHHhccCCceEEEcC--------------HHHHHHHHHhcCCCcEEECCCcCcCcCCCCcc
Confidence 1 00 112345566777877777788876532 234556677664 11333333322 1
Q ss_pred ---HHHHHHHcCCccEEEechHhhhCCcHHHHHH
Q 017448 309 ---DGNKAVAENYTDLVAYGRSFLANPDLPKRFE 339 (371)
Q Consensus 309 ---~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 339 (371)
....++..| .|++.+||+....++=...++
T Consensus 196 ~~~t~~~A~~~G-ad~ivVGR~I~~a~~p~~a~~ 228 (240)
T COG0284 196 RVMTPGEAVRAG-ADYIVVGRPITQAGDPVAAAR 228 (240)
T ss_pred cccCHHHHHhcC-CCEEEEChhhhcCCChHHHHH
Confidence 145566666 999999999999887554443
No 328
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.04 E-value=0.27 Score=47.21 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechH-
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRS- 327 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~- 327 (371)
.+..++-++.|+++|++.|-+.. -+ ...++.|.+.+++|+|+.|.=..-+.+-++- -|++++...
T Consensus 181 a~~li~dA~ale~AGAf~ivLE~----------Vp-~~la~~It~~l~IPtIGIGAG~~cDGQVLV~---~D~LG~~~~p 246 (332)
T PLN02424 181 AVKVVETALALQEAGCFAVVLEC----------VP-APVAAAITSALQIPTIGIGAGPFCSGQVLVY---HDLLGMMQHP 246 (332)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcC----------Cc-HHHHHHHHHhCCCCEEeecCCCCCCceeEeH---HhhcCCCCCc
Confidence 44567788999999999887622 22 2378899999999998776421111211111 355555421
Q ss_pred h--hhCCcHHHHHHhCC
Q 017448 328 F--LANPDLPKRFELNA 342 (371)
Q Consensus 328 ~--ladP~l~~k~~~g~ 342 (371)
. =..|.|+++..+..
T Consensus 247 ~h~~~~PkFvk~y~~~~ 263 (332)
T PLN02424 247 HHAKVTPKFCKQYAKVG 263 (332)
T ss_pred cccCCCCchHHHHHhHH
Confidence 0 02567777766553
No 329
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.04 E-value=0.11 Score=46.54 Aligned_cols=81 Identities=11% Similarity=0.072 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+.+++..+++.|.+.|+..++|+..+ +.....++.+++.++.-+|+.|-+ |.++++++++.| ++|+..=
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t--------p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~FivSP- 83 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT--------PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIVSP- 83 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC--------ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEECC-
Confidence 46778999999999999999997642 123456777887776667888887 999999999999 8988752
Q ss_pred HhhhCCcHHHHHHh
Q 017448 327 SFLANPDLPKRFEL 340 (371)
Q Consensus 327 ~~ladP~l~~k~~~ 340 (371)
..||++.+..++
T Consensus 84 --~~~~~vi~~a~~ 95 (201)
T PRK06015 84 --GTTQELLAAAND 95 (201)
T ss_pred --CCCHHHHHHHHH
Confidence 267777776554
No 330
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.04 E-value=0.22 Score=46.38 Aligned_cols=78 Identities=19% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.+++++-++.++++|+|.|-+.. .+ ...++.|.+.+++|+|+.|.=..-|..-++- .|++++...
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~----------v~-~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~---~D~lG~~~~- 221 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC----------VP-AELAKEITEALSIPTIGIGAGPDCDGQVLVW---HDMLGLSPG- 221 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC----------CC-HHHHHHHHHhCCCCEEEeccCCCCCceeehH---HhhcCCCCC-
Confidence 56788889999999999987622 12 3578899999999999877421112222221 355665433
Q ss_pred hhCCcHHHHHHhCC
Q 017448 329 LANPDLPKRFELNA 342 (371)
Q Consensus 329 ladP~l~~k~~~g~ 342 (371)
.-|.++++..+..
T Consensus 222 -~~p~f~k~~~~~~ 234 (254)
T cd06557 222 -FKPKFVKRYADLG 234 (254)
T ss_pred -CCCCcHHHHhhhH
Confidence 3677777776643
No 331
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.03 E-value=0.14 Score=48.46 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=68.5
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-+-+- .+|..++. .+.|+++|+..+.. .|.|... +.+++ .+..++|+|.|-+
T Consensus 160 ~~HR~gLsD~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~------------tleea----~~a~~agaDiImL 223 (290)
T PRK06559 160 YNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVE------------SLAAA----EEAAAAGADIIML 223 (290)
T ss_pred cccCCCCcceEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECC------------CHHHH----HHHHHcCCCEEEE
Confidence 67888777764 46777765 46666777766532 4544332 34433 3344689998876
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
...+ +.......+.+++ ++.+.+.||||.+...+..+.| +|+|++|....
T Consensus 224 Dnms-------pe~l~~av~~~~~--~~~leaSGGI~~~ni~~yA~tG-VD~Is~galth 273 (290)
T PRK06559 224 DNMS-------LEQIEQAITLIAG--RSRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH 273 (290)
T ss_pred CCCC-------HHHHHHHHHHhcC--ceEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 3321 1111112222222 3568899999999999999998 99999998665
No 332
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.97 E-value=0.078 Score=50.90 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=50.3
Q ss_pred HHHHHHHHhhcC--ccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQ--ILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~G--vd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+.++.|.+++ +|+|.|....-. .....+.+++||+.++.+.+..|++ |+++++.+++.| +|.|-+|
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGh-----s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG-AD~ikVg 178 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGY-----SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG-ADIVKVG 178 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-CCEEEEc
Confidence 356777787775 999877432110 0113456788999998888888988 999999999998 9998665
No 333
>PRK06852 aldolase; Validated
Probab=94.96 E-value=0.75 Score=43.88 Aligned_cols=82 Identities=13% Similarity=0.005 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCC--CH----HHHHHHHHcCCcc
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGY--NR----DDGNKAVAENYTD 320 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggi--t~----~~a~~~l~~g~~D 320 (371)
..+.....++...+.|.|+|-+--+... .....+..+++-+.. ++||+..||= +. +...++++.+++.
T Consensus 186 ~~~~ia~aaRiaaELGADIVKv~y~~~~-----~~g~~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~ 260 (304)
T PRK06852 186 DPHLIAGAAGVAACLGADFVKVNYPKKE-----GANPAELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISGAS 260 (304)
T ss_pred cHHHHHHHHHHHHHHcCCEEEecCCCcC-----CCCCHHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3455667777788999999986332100 001234455566666 7897777774 43 3456677734599
Q ss_pred EEEechHhhhCCcH
Q 017448 321 LVAYGRSFLANPDL 334 (371)
Q Consensus 321 ~V~~gR~~ladP~l 334 (371)
.|.+||=.+..|+-
T Consensus 261 Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 261 GNATGRNIHQKPLD 274 (304)
T ss_pred eeeechhhhcCCCc
Confidence 99999999999653
No 334
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.93 E-value=3.1 Score=38.56 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=120.2
Q ss_pred CCCceeCCeecCC-ceeeccCCCCCCCCCCCCHHHHHHHHHHcc--cCceEEEccceeCCCCCCCCCCCCCCChhhhhch
Q 017448 16 LTPYKMGPFNLSH-RIVLAPLTRNRSYNNIPQPHAILYYSQRTT--NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAW 92 (371)
Q Consensus 16 f~P~~ig~~~l~N-Riv~apm~~~~~~~g~~~~~~~~~y~~~a~--g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
...+.+++....+ .++..|..-. |+.++.--.+..+ |+.++.-+..- .+++......+| .+++
T Consensus 3 ~~~~~~~~~~~~~~~~iaGPC~vE-------s~e~~~~~a~~~~~~g~~~~r~g~~k-pRts~~sf~G~G------~~gl 68 (250)
T PRK13397 3 DIMSDFQNKTCSKNNFIVGPCSIE-------SYDHIRLAASSAKKLGYNYFRGGAYK-PRTSAASFQGLG------LQGI 68 (250)
T ss_pred cceEEecCccCCCCcEEeccCccC-------CHHHHHHHHHHHHHcCCCEEEecccC-CCCCCcccCCCC------HHHH
Confidence 3456677666653 5666777553 3333322222232 55566666543 322222222222 3588
Q ss_pred HHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 017448 93 KPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIK 172 (371)
Q Consensus 93 ~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~ 172 (371)
+.|.+..++.|-+++-..++ ...+..+.+
T Consensus 69 ~~L~~~~~~~Gl~~~Tev~d---------------------------------------------------~~~v~~~~e 97 (250)
T PRK13397 69 RYLHEVCQEFGLLSVSEIMS---------------------------------------------------ERQLEEAYD 97 (250)
T ss_pred HHHHHHHHHcCCCEEEeeCC---------------------------------------------------HHHHHHHHh
Confidence 99999999999888865432 234445555
Q ss_pred cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHH
Q 017448 173 AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALG 252 (371)
Q Consensus 173 aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~ 252 (371)
..|.++|-+.. .+ | .++++++-+. | .||.+|-... .+.++.
T Consensus 98 -~vdilqIgs~~-------------~~---------n-----~~LL~~va~t-g-kPVilk~G~~---------~t~~e~ 138 (250)
T PRK13397 98 -YLDVIQVGARN-------------MQ---------N-----FEFLKTLSHI-D-KPILFKRGLM---------ATIEEY 138 (250)
T ss_pred -cCCEEEECccc-------------cc---------C-----HHHHHHHHcc-C-CeEEEeCCCC---------CCHHHH
Confidence 59999986544 11 1 4556665442 3 3788776542 357778
Q ss_pred HHHHHHHhhcCccEEEEcC-CCcccCCC-CCCCCchhhHhHHHhcCCCeEeeCCCC-------HHHHHHHHHcCCccEEE
Q 017448 253 LYMAKALNKYQILYLHILE-PRLFNAQD-KLDAPPYSLLPMRKAFDGTFIASGGYN-------RDDGNKAVAENYTDLVA 323 (371)
Q Consensus 253 ~~la~~l~~~Gvd~l~v~~-~~~~~~~~-~~~~~~~~~~~ik~~~~~pVi~~Ggit-------~~~a~~~l~~g~~D~V~ 323 (371)
...++.+.+.|..-|-+.+ +..+.+.. ....+...+..+|+.++.||+..-..+ +..+..+++-| +|+++
T Consensus 139 ~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~G-AdGl~ 217 (250)
T PRK13397 139 LGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVG-ANGIM 217 (250)
T ss_pred HHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhC-CCEEE
Confidence 8888888888875555555 44222210 112334556778888899987742231 35678899998 99777
Q ss_pred ec
Q 017448 324 YG 325 (371)
Q Consensus 324 ~g 325 (371)
+=
T Consensus 218 IE 219 (250)
T PRK13397 218 ME 219 (250)
T ss_pred EE
Confidence 64
No 335
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=94.85 E-value=0.65 Score=42.09 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEE
Q 017448 155 EIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIR 233 (371)
Q Consensus 155 eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vr 233 (371)
||-..+.. +++.+.+.|+|.+-+|+..| ...+...+++.++. +.. .+.+.
T Consensus 60 DIg~tv~~---~~~~~~~~gad~~Tvh~~~G-------------------------~~~l~~~~~~~~~~-~~~~~~v~~ 110 (216)
T cd04725 60 DIPNTVAA---AAEALLGLGADAVTVHPYGG-------------------------SDMLKAALEAAEEK-GKGLFAVTV 110 (216)
T ss_pred chHHHHHH---HHHHHHhcCCCEEEECCcCC-------------------------HHHHHHHHHHHhcc-CCeEEEEEc
Confidence 34444444 33445567999999998764 12233334443321 233 23445
Q ss_pred EcCccCc--CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHH--
Q 017448 234 LSPHANY--MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRD-- 308 (371)
Q Consensus 234 l~~~~~~--~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~-- 308 (371)
++..... .........+.+..+++...+.|++.+-++.. . ...+++.. +.-.+.+.|+.++
T Consensus 111 lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~-----------~---~~~i~~~~~~~~~~ltPGI~~~~~ 176 (216)
T cd04725 111 LSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGAT-----------E---PEALRRALGPDFLILTPGIGAQGS 176 (216)
T ss_pred CCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCc-----------c---hHHHHHhhCCCCeEEcCCcCCCCC
Confidence 5532111 11011123445667888888888776654321 1 22223333 2345777888655
Q ss_pred --------HHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 309 --------DGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 309 --------~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
..++++..| +|++.+||+.+..++-...+
T Consensus 177 ~~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~~ 213 (216)
T cd04725 177 GDDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAAA 213 (216)
T ss_pred ccccccccCHHHHHHcC-CcEEEEChhhccCCCHHHHH
Confidence 678888888 99999999999998855444
No 336
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.84 E-value=0.7 Score=43.86 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=78.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc
Q 017448 150 PLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER 229 (371)
Q Consensus 150 ~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~ 229 (371)
.+..+.++++++ ...+.|.|||-+.+.-| +|. -=|.+.|.+++..+++++. |..+
T Consensus 17 ~iD~~~l~~l~~-------~l~~~Gv~gi~v~GstG----E~~-----------~Ls~eEr~~l~~~~~~~~~---~~~p 71 (289)
T cd00951 17 SFDEDAYRAHVE-------WLLSYGAAALFAAGGTG----EFF-----------SLTPDEYAQVVRAAVEETA---GRVP 71 (289)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHHhC---CCCC
Confidence 455555555544 44569999999877654 111 1145777777666665543 2225
Q ss_pred cEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee---CC-C
Q 017448 230 VGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS---GG-Y 305 (371)
Q Consensus 230 i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~---Gg-i 305 (371)
|.+=++ . ..++++++++..++.|+|.+-+..|.+.... ......+.+.|.+.+++||+.- |. +
T Consensus 72 vi~gv~----------~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~--~~~i~~~f~~v~~~~~~pi~lYn~~g~~l 138 (289)
T cd00951 72 VLAGAG----------Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAP--QEGLYAHVEAVCKSTDLGVIVYNRANAVL 138 (289)
T ss_pred EEEecC----------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence 443222 2 3466899999999999999988776554321 1112345566777788996643 32 4
Q ss_pred CHHHHHHHHH
Q 017448 306 NRDDGNKAVA 315 (371)
Q Consensus 306 t~~~a~~~l~ 315 (371)
+++...++.+
T Consensus 139 ~~~~l~~L~~ 148 (289)
T cd00951 139 TADSLARLAE 148 (289)
T ss_pred CHHHHHHHHh
Confidence 7887777775
No 337
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=94.80 E-value=0.82 Score=48.58 Aligned_cols=148 Identities=11% Similarity=0.100 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEE-EcCccCcC-
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIR-LSPHANYM- 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vr-l~~~~~~~- 241 (371)
.+-|+...++|+++|=|. +..+-||||+++ +..||+.+.- ||.-| +=. +.++
T Consensus 73 ~~~a~~y~~~GA~aiSVl----------------Te~~~F~Gs~~~--------l~~vr~~v~~-PvLrKDFIi-d~~QI 126 (695)
T PRK13802 73 AALAREYEQGGASAISVL----------------TEGRRFLGSLDD--------FDKVRAAVHI-PVLRKDFIV-TDYQI 126 (695)
T ss_pred HHHHHHHHHcCCcEEEEe----------------cCcCcCCCCHHH--------HHHHHHhCCC-CEEeccccC-CHHHH
Confidence 456667788999999853 455678999654 6666776632 43322 100 0000
Q ss_pred --------cC----CCCChHHHHHHHHHHHhhcCccE-EEEcCCC-----cccC-------CC---CCCCCchhhHhHHH
Q 017448 242 --------EA----QDSNPEALGLYMAKALNKYQILY-LHILEPR-----LFNA-------QD---KLDAPPYSLLPMRK 293 (371)
Q Consensus 242 --------~~----~~~~~~e~~~~la~~l~~~Gvd~-l~v~~~~-----~~~~-------~~---~~~~~~~~~~~ik~ 293 (371)
+. -.-.+.++..++.+...+.|++- ++||... .... .+ ....+......+..
T Consensus 127 ~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~ 206 (695)
T PRK13802 127 WEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAA 206 (695)
T ss_pred HHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHh
Confidence 00 00112344566777777888875 4776421 0000 00 11112233445556
Q ss_pred hcC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 294 AFD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 294 ~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
.++ ..+|+-+|+ +++++..+.+.| +|.|.+|..++..||.-..+
T Consensus 207 ~ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 207 DLPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAV 253 (695)
T ss_pred hCCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHH
Confidence 553 346677888 999999999988 99999999999999865543
No 338
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=94.77 E-value=0.43 Score=48.65 Aligned_cols=126 Identities=17% Similarity=0.059 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEc
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLS 235 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~ 235 (371)
.+++.|++ .+.++|.|.+.|-.+. |..+-+...+++++++-..- .|++-++
T Consensus 97 dvv~~fv~---~a~~~Gidi~RIfd~l------------------------ndv~nl~~ai~~vk~ag~~~~~~i~yt~s 149 (499)
T PRK12330 97 EVVDRFVE---KSAENGMDVFRVFDAL------------------------NDPRNLEHAMKAVKKVGKHAQGTICYTVS 149 (499)
T ss_pred hHHHHHHH---HHHHcCCCEEEEEecC------------------------ChHHHHHHHHHHHHHhCCeEEEEEEEecC
Confidence 34555555 4456799999886654 22355677788887765422 2444555
Q ss_pred CccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCC----CCHHH
Q 017448 236 PHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGG----YNRDD 309 (371)
Q Consensus 236 ~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Gg----it~~~ 309 (371)
+ ..+.+...++++++++.|+|.|.+.... +.. .+.....+++.+|+.+ ++||-.=.. +....
T Consensus 150 p---------~~t~e~~~~~a~~l~~~Gad~I~IkDta-Gll--~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An 217 (499)
T PRK12330 150 P---------IHTVEGFVEQAKRLLDMGADSICIKDMA-ALL--KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVS 217 (499)
T ss_pred C---------CCCHHHHHHHHHHHHHcCCCEEEeCCCc-cCC--CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHH
Confidence 4 2367889999999999999999886532 111 1122345677888888 567543221 22567
Q ss_pred HHHHHHcCCccEEE
Q 017448 310 GNKAVAENYTDLVA 323 (371)
Q Consensus 310 a~~~l~~g~~D~V~ 323 (371)
...+++.| ||.|=
T Consensus 218 ~laAieAG-ad~vD 230 (499)
T PRK12330 218 LMKAIEAG-VDVVD 230 (499)
T ss_pred HHHHHHcC-CCEEE
Confidence 78899998 78774
No 339
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=94.75 E-value=3.3 Score=38.75 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEE
Q 017448 155 EIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIR 233 (371)
Q Consensus 155 eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vr 233 (371)
||-..+..|++++. ...|+|.|-+|...| ...+...++..++ .|.. .|.++
T Consensus 97 DIpnTv~~~a~a~~--~~~g~D~vTvh~~~G-------------------------~d~l~~~~~~~~~-~~~~v~Vlvl 148 (261)
T TIGR02127 97 DIGSTASAYAKAWL--GHLHADALTVSPYLG-------------------------LDSLRPFLEYARA-NGAGIFVLVK 148 (261)
T ss_pred ChHHHHHHHHHHHH--hhcCCCEEEECCcCC-------------------------HHHHHHHHHHHhh-cCCEEEEEEe
Confidence 56666666666643 368999999997554 1222333333322 2223 46777
Q ss_pred EcC-cc-CcCcCCC--C-ChHHHHHHHHHHHhhc----CccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCC
Q 017448 234 LSP-HA-NYMEAQD--S-NPEALGLYMAKALNKY----QILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGG 304 (371)
Q Consensus 234 l~~-~~-~~~~~~~--~-~~~e~~~~la~~l~~~----Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Gg 304 (371)
.|. .. ++.+... + ...+...++++.+.+. |.+.+-+. ......++.+|+.++.-.+.+=|
T Consensus 149 TSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~g-----------AT~p~e~~~iR~~~~~~~il~PG 217 (261)
T TIGR02127 149 TSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVG-----------ATSPGDLLRLRIEMPTAPFLVPG 217 (261)
T ss_pred CCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEEC-----------CCCHHHHHHHHHhCCCCeEEeCC
Confidence 774 21 2322211 1 2234555666666543 45555431 11234577788876432333333
Q ss_pred C-----CHHHHHHHHHcCCcc-EEEechHhhhCCcHHHHH
Q 017448 305 Y-----NRDDGNKAVAENYTD-LVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 305 i-----t~~~a~~~l~~g~~D-~V~~gR~~ladP~l~~k~ 338 (371)
+ +.++..+.+.....| ++.+||+.+.-++-...+
T Consensus 218 igaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~ 257 (261)
T TIGR02127 218 FGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSAL 257 (261)
T ss_pred cCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHH
Confidence 3 466777766544578 899999998877654443
No 340
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.15 Score=45.72 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
..|++..+++.|.+.|++.|+|+.++ + .-.+.++.+++.+..-+|+.|-+ ++++++++++.| ++||.-
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~s-------p-~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG-a~fiVs-- 91 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRT-------P-AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG-AQFIVS-- 91 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC-------C-CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC-CCEEEC--
Confidence 46789999999999999999997652 2 23467888888888678888887 999999999999 888753
Q ss_pred HhhhCCcHHHHH
Q 017448 327 SFLANPDLPKRF 338 (371)
Q Consensus 327 ~~ladP~l~~k~ 338 (371)
|- .||++++..
T Consensus 92 P~-~~~ev~~~a 102 (211)
T COG0800 92 PG-LNPEVAKAA 102 (211)
T ss_pred CC-CCHHHHHHH
Confidence 11 345555443
No 341
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=94.74 E-value=0.047 Score=49.86 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCEEeccccc---------chHHhhhcCCccc-----------------------------CCCCCCC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGAN---------GYLIDQFMKDQVN-----------------------------DRTDQYG 204 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~---------gyLl~qFlSp~~N-----------------------------~R~D~yG 204 (371)
-+++|..|+++|+|||-+|--- =+.|.+.++-..| ..|-+.|
T Consensus 24 pv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~e~TTegG 103 (239)
T PF03740_consen 24 PVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKREELTTEGG 103 (239)
T ss_dssp HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGGGBSTTSS
T ss_pred HHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCCCcCCCcC
Confidence 3799999999999999987532 2344444433333 2233333
Q ss_pred CchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCC
Q 017448 205 GSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAP 284 (371)
Q Consensus 205 gs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~ 284 (371)
=++......+.++++.+++. +||+|.+- ++.. +-++...+.|+|+|+++.+.|...+ .....
T Consensus 104 ldv~~~~~~l~~~i~~L~~~------gIrvSLFi--------DP~~---~qi~~A~~~Gad~VELhTG~yA~a~-~~~~~ 165 (239)
T PF03740_consen 104 LDVAGNRDRLKPVIKRLKDA------GIRVSLFI--------DPDP---EQIEAAKELGADRVELHTGPYANAF-DDAEE 165 (239)
T ss_dssp B-TCGGHHHHHHHHHHHHHT------T-EEEEEE---------S-H---HHHHHHHHTT-SEEEEETHHHHHHS-SHHHH
T ss_pred ChhhcCHHHHHHHHHHHHhC------CCEEEEEe--------CCCH---HHHHHHHHcCCCEEEEehhHhhhhc-CCHHH
Confidence 34444445555555555542 33444331 1122 2233344567888888877654322 10000
Q ss_pred c--hhhHhHHH------hcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 285 P--YSLLPMRK------AFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 285 ~--~~~~~ik~------~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
. .+++.+++ ....-|-++.|++.+....+.+--.+.=|.+|.+++++-
T Consensus 166 ~~~ell~~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 166 AEEELLERLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHH
Confidence 0 11222222 235567788889988888888877799999999998864
No 342
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.72 E-value=4 Score=38.80 Aligned_cols=140 Identities=13% Similarity=0.093 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCC-CC--chhhhhHHHHHHHHHHHHHh-CCc-ccEEEEcCc
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQY-GG--SLENRCRFALEIVEAVVNEI-GAE-RVGIRLSPH 237 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~y-Gg--s~enR~r~~~eiv~avR~~v-g~~-~i~vrl~~~ 237 (371)
..+.+++..++|+-||.|-=.. .++|.... -| .+.. .....+-|++++++. +++ .|..|....
T Consensus 92 v~~tV~~~~~aGvagi~IEDq~-----------~pk~cg~~~~g~~~l~~-~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~ 159 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVMEDKT-----------FPKDTSLRTDGRQELVR-IEEFQGKIAAATAARADRDFVVIARVEAL 159 (290)
T ss_pred HHHHHHHHHHcCCeEEEEeCCC-----------CCcccccccCCCccccC-HHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 4667788889999999885432 23443322 11 2222 233455566666554 333 466676542
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCC--CeEeeCCCCHH-HHHHHH
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDG--TFIASGGYNRD-DGNKAV 314 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~--pVi~~Ggit~~-~a~~~l 314 (371)
. . ....+++++-++...++|.|.|-+..+ ......++.+.+.++. ||+.+.+-++. ...++-
T Consensus 160 ~--~----~~g~deAI~Ra~aY~eAGAD~ifv~~~---------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~ 224 (290)
T TIGR02321 160 I--A----GLGQQEAVRRGQAYEEAGADAILIHSR---------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIA 224 (290)
T ss_pred c--c----cCCHHHHHHHHHHHHHcCCCEEEecCC---------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHH
Confidence 1 1 223578899999999999999887432 1234556667777764 66554332221 223444
Q ss_pred HcCCccEEEechHhh
Q 017448 315 AENYTDLVAYGRSFL 329 (371)
Q Consensus 315 ~~g~~D~V~~gR~~l 329 (371)
+-|.+..|.++-.++
T Consensus 225 ~lg~~~~v~~g~~~~ 239 (290)
T TIGR02321 225 ALSKVGIVIYGNHAI 239 (290)
T ss_pred HhcCCcEEEEChHHH
Confidence 456678899884433
No 343
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.71 E-value=0.14 Score=50.89 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=51.0
Q ss_pred HHHHHhhcC-ccEEEEcCCCcccCCCCCCCCch---hhHhHHHhc--------CCCeEeeCCC-CHHHHHHHHHcCCccE
Q 017448 255 MAKALNKYQ-ILYLHILEPRLFNAQDKLDAPPY---SLLPMRKAF--------DGTFIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 255 la~~l~~~G-vd~l~v~~~~~~~~~~~~~~~~~---~~~~ik~~~--------~~pVi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
-++.+++.| +|.|.+. ...+... ....... .+..+++.+ ++||++.||| |++.+..++.-| +|+
T Consensus 168 eA~~A~~~g~aD~Ivvq-~EAGGH~-g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG-Ad~ 244 (418)
T cd04742 168 QAELARRVPVADDITVE-ADSGGHT-DNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG-ADF 244 (418)
T ss_pred HHHHHHhCCCCCEEEEc-ccCCCCC-CCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC-CcE
Confidence 345566667 4888774 2211111 1111112 233444444 6899999999 999999999999 999
Q ss_pred EEechHhhhCCc
Q 017448 322 VAYGRSFLANPD 333 (371)
Q Consensus 322 V~~gR~~ladP~ 333 (371)
|.+|..+++-++
T Consensus 245 V~~GT~flat~E 256 (418)
T cd04742 245 IVTGSINQCTVE 256 (418)
T ss_pred EeeccHHHhCcc
Confidence 999999999774
No 344
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.67 E-value=0.42 Score=47.05 Aligned_cols=87 Identities=16% Similarity=0.052 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc-cEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~-i~vrl~~~~~ 239 (371)
+.+++.+....++|.|+|...... -+|.++ +++.|.+...+.++++.++.|..+ +..=++
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~---ge~~~~------------~~eER~~~v~~av~~a~~~TG~~~~y~~nit---- 206 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELL---ADQPYA------------PFEERVRACMEAVRRANEETGRKTLYAPNIT---- 206 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccc---cCcccC------------CHHHHHHHHHHHHHHHHHhhCCcceEEEEcC----
Confidence 456677777778999999865433 333333 468999999999999999998753 333222
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPR 273 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~ 273 (371)
. ..+++++.++.++++|+|.+-+..+.
T Consensus 207 ------~-~~~e~i~~a~~a~~~Gad~vmv~~~~ 233 (367)
T cd08205 207 ------G-DPDELRRRADRAVEAGANALLINPNL 233 (367)
T ss_pred ------C-CHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2 23778999999999999998876554
No 345
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.62 E-value=0.83 Score=43.50 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=77.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-
Q 017448 150 PLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE- 228 (371)
Q Consensus 150 ~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~- 228 (371)
.+..+.++++++ ...+.|.|||-+.+.-| +|.+ =|.+.|.+++..+++. ++..
T Consensus 22 ~iD~~~l~~li~-------~l~~~Gv~gi~v~GstG----E~~~-----------Lt~eEr~~v~~~~~~~----~~g~~ 75 (296)
T TIGR03249 22 SFDEAAYRENIE-------WLLGYGLEALFAAGGTG----EFFS-----------LTPAEYEQVVEIAVST----AKGKV 75 (296)
T ss_pred CcCHHHHHHHHH-------HHHhcCCCEEEECCCCc----Cccc-----------CCHHHHHHHHHHHHHH----hCCCC
Confidence 455555555554 44579999999877654 2221 1346666555555444 4333
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee---C-C
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS---G-G 304 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~---G-g 304 (371)
+|.+=++ . ..++++++++..++.|+|.+-+..|.+..+. ......+.+.|.++++.||+.- | .
T Consensus 76 pvi~gv~----------~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s--~~~i~~~f~~v~~a~~~pvilYn~~g~~ 142 (296)
T TIGR03249 76 PVYTGVG----------G-NTSDAIEIARLAEKAGADGYLLLPPYLINGE--QEGLYAHVEAVCESTDLGVIVYQRDNAV 142 (296)
T ss_pred cEEEecC----------c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHhccCCCEEEEeCCCCC
Confidence 4433222 2 2567899999999999999988777654322 1112345667777788896633 3 2
Q ss_pred CCHHHHHHHHH
Q 017448 305 YNRDDGNKAVA 315 (371)
Q Consensus 305 it~~~a~~~l~ 315 (371)
++++...++.+
T Consensus 143 l~~~~~~~La~ 153 (296)
T TIGR03249 143 LNADTLERLAD 153 (296)
T ss_pred CCHHHHHHHHh
Confidence 47887777775
No 346
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.62 E-value=1.1 Score=43.51 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=103.5
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
++.-.++++++++.|-++++-++-+-.++.|..+ .-| ..=..++.+++.+-|-+|.....
T Consensus 57 ~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q------~~P--------------~aW~~~~~~~l~~~v~~yT~~vl 116 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ------NKP--------------AAWANLSFDQLAKAVYDYTKDVL 116 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-------B----------------TTCTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC------CCC--------------ccCCCCCHHHHHHHHHHHHHHHH
Confidence 4577889999999999999988655444433221 000 01134688999999999999886
Q ss_pred HH-HHcCC--CEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCC
Q 017448 169 NA-IKAGF--DGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245 (371)
Q Consensus 169 ~a-~~aG~--DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~ 245 (371)
.+ +++|. |-|+| |+. +=.-||.|..+ .....+=.+|+..-+++||+..+.-.|.|-+..
T Consensus 117 ~~l~~~G~~pd~VQV--GNE-in~Gmlwp~g~------~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~--------- 178 (332)
T PF07745_consen 117 QALKAAGVTPDMVQV--GNE-INNGMLWPDGK------PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLAN--------- 178 (332)
T ss_dssp HHHHHTT--ESEEEE--SSS-GGGESTBTTTC------TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES----------
T ss_pred HHHHHCCCCccEEEe--Ccc-ccccccCcCCC------ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECC---------
Confidence 66 45786 67764 332 33456666543 556778788999999999995543256665543
Q ss_pred CChHHHHHHHHHHHhhcCcc--EEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee
Q 017448 246 SNPEALGLYMAKALNKYQIL--YLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS 302 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd--~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~ 302 (371)
....+....+...|.+.|+| +|-+|--.+.... .......+..+++..+.||+++
T Consensus 179 ~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~--l~~l~~~l~~l~~ry~K~V~V~ 235 (332)
T PF07745_consen 179 GGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT--LEDLKNNLNDLASRYGKPVMVV 235 (332)
T ss_dssp TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST---HHHHHHHHHHHHHHHT-EEEEE
T ss_pred CCchHHHHHHHHHHHhcCCCcceEEEecCCCCcch--HHHHHHHHHHHHHHhCCeeEEE
Confidence 22345678899999999965 4655432111000 0001123445667777786644
No 347
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.57 E-value=1.1 Score=43.03 Aligned_cols=118 Identities=12% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCC------------c--cc-CC
Q 017448 214 ALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPR------------L--FN-AQ 278 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~------------~--~~-~~ 278 (371)
+..+.+--|+..+.+.|.+-+-++..+ ... +..++++-++.|.+.|..-+-+.... . .+ ..
T Consensus 152 Av~~a~lare~~~~~~iKlEvi~e~~~---llp-d~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~ 227 (326)
T PRK11840 152 AVRTLRLAREAGGWDLVKLEVLGDAKT---LYP-DMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGA 227 (326)
T ss_pred HHHHHHHHHHhcCCCeEEEEEcCCCCC---ccc-CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccc
Confidence 444555556666655444444442211 112 34556777777877785543222211 0 00 00
Q ss_pred C----CCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHH
Q 017448 279 D----KLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPK 336 (371)
Q Consensus 279 ~----~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~ 336 (371)
. -+-.+.+.++.+.+..++||++.+|| +++++.++++-| +|.|.+..+...-+|-+.
T Consensus 228 pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG-adgVL~nSaIa~a~dPv~ 289 (326)
T PRK11840 228 PIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG-CDGVLMNTAIAEAKNPVL 289 (326)
T ss_pred cccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeccCCCHHH
Confidence 0 11125567888888889999999999 999999999999 999999999886666443
No 348
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.56 E-value=0.24 Score=47.32 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=76.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-
Q 017448 150 PLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE- 228 (371)
Q Consensus 150 ~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~- 228 (371)
.+..+.++++++ ...+.|.|||-+.+.-| +|. -=+.+.|.+++..++++ ++..
T Consensus 24 ~iD~~~l~~li~-------~l~~~Gv~Gi~~~GstG----E~~-----------~Lt~eEr~~~~~~~~~~----~~~~~ 77 (303)
T PRK03620 24 SFDEAAYREHLE-------WLAPYGAAALFAAGGTG----EFF-----------SLTPDEYSQVVRAAVET----TAGRV 77 (303)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECcCCc----Ccc-----------cCCHHHHHHHHHHHHHH----hCCCC
Confidence 455555555555 44457999999877654 111 11356776665555444 4433
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee---C-C
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS---G-G 304 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~---G-g 304 (371)
+|.+=++ . ..++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+.+++||+.- | .
T Consensus 78 pvi~gv~----------~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~--~~~i~~~f~~va~~~~lpi~lYn~~g~~ 144 (303)
T PRK03620 78 PVIAGAG----------G-GTAQAIEYAQAAERAGADGILLLPPYLTEAP--QEGLAAHVEAVCKSTDLGVIVYNRDNAV 144 (303)
T ss_pred cEEEecC----------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC--HHHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 4433112 2 3567899999999999999988777554322 1122345566777788886643 3 2
Q ss_pred CCHHHHHHHH
Q 017448 305 YNRDDGNKAV 314 (371)
Q Consensus 305 it~~~a~~~l 314 (371)
++++...++.
T Consensus 145 l~~~~l~~L~ 154 (303)
T PRK03620 145 LTADTLARLA 154 (303)
T ss_pred CCHHHHHHHH
Confidence 3677777776
No 349
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.56 E-value=0.46 Score=43.80 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+-.|+.++++||++|-+.+. -++--+ -..|.--=+++. +++.++.|.+.+. -||.+.+..
T Consensus 19 ~~SAr~~e~~Gf~ai~~sg~---~~a~s~-----G~pD~~~lt~~e----~~~~~~~I~~~~~-iPv~vD~d~------- 78 (238)
T PF13714_consen 19 ALSARLAERAGFDAIATSGA---GVAASL-----GYPDGGLLTLTE----MLAAVRRIARAVS-IPVIVDADT------- 78 (238)
T ss_dssp HHHHHHHHHTT-SEEEEHHH---HHHHHT-----TS-SSS-S-HHH----HHHHHHHHHHHSS-SEEEEE-TT-------
T ss_pred HHHHHHHHHcCCCEEEechH---HHHHHc-----CCCCCCCCCHHH----HHHHHHHHHhhhc-CcEEEEccc-------
Confidence 57899999999999986432 222111 223321112222 3455666666662 388886653
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHh---cCCC-eEeeCCCC------------H
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKA---FDGT-FIASGGYN------------R 307 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~---~~~p-Vi~~Ggit------------~ 307 (371)
+.+++.....+.++.++++|+..++|...........-.+......+||.. .+.+ ++.+.+-+ .
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 234446678889999999999999997662221110111122344444443 3332 44443321 2
Q ss_pred HHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 308 DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 308 ~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
+.++...+.| +|+|.+ +.+.+.+-++++.+.
T Consensus 159 ~R~~aY~eAG-AD~ifi--~~~~~~~~i~~~~~~ 189 (238)
T PF13714_consen 159 ERAKAYAEAG-ADMIFI--PGLQSEEEIERIVKA 189 (238)
T ss_dssp HHHHHHHHTT--SEEEE--TTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHh
Confidence 3455667777 999987 444556555555443
No 350
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.55 E-value=0.2 Score=48.12 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=52.0
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc----------CCCeEeeCCC-CHHHHHHHHHcCC----
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF----------DGTFIASGGY-NRDDGNKAVAENY---- 318 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~----------~~pVi~~Ggi-t~~~a~~~l~~g~---- 318 (371)
..++.+++.|+|.|-+...-..... ....-..+...+.+.+ ++|||+.||| +-..+..++.-|.
T Consensus 114 ~~A~~a~~~GaD~vVaqG~EAGGH~-G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~ 192 (320)
T cd04743 114 GLLKQFLENGARKFIFEGRECGGHV-GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAE 192 (320)
T ss_pred HHHHHHHHcCCCEEEEecCcCcCCC-CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccc
Confidence 4667889999999977443221111 1000011223333222 7999999999 8888777777763
Q ss_pred --c-cEEEechHhhhCCcH
Q 017448 319 --T-DLVAYGRSFLANPDL 334 (371)
Q Consensus 319 --~-D~V~~gR~~ladP~l 334 (371)
+ +.|.||..|++-++-
T Consensus 193 ~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 193 RGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred cccccEEEEccHHhcchhh
Confidence 2 899999999997776
No 351
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.53 E-value=2.6 Score=39.01 Aligned_cols=150 Identities=14% Similarity=0.090 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC--
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM-- 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~-- 241 (371)
.+-|+...++|+++|=| ++...-||||+++ ++.+|+.+.. ||..|==..+.++
T Consensus 64 ~~~A~~y~~~GA~aISV----------------lTe~~~F~Gs~~~--------l~~v~~~v~~-PvL~KDFIid~~QI~ 118 (247)
T PRK13957 64 VQIAKTYETLGASAISV----------------LTDQSYFGGSLED--------LKSVSSELKI-PVLRKDFILDEIQIR 118 (247)
T ss_pred HHHHHHHHHCCCcEEEE----------------EcCCCcCCCCHHH--------HHHHHHhcCC-CEEeccccCCHHHHH
Confidence 46667788899999943 3555678999654 5556665521 3332200000000
Q ss_pred -----cC------CCCChHHHHHHHHHHHhhcCccE-EEEcCCC-----c--cc-----CCC---CCCCCchhhHhHHHh
Q 017448 242 -----EA------QDSNPEALGLYMAKALNKYQILY-LHILEPR-----L--FN-----AQD---KLDAPPYSLLPMRKA 294 (371)
Q Consensus 242 -----~~------~~~~~~e~~~~la~~l~~~Gvd~-l~v~~~~-----~--~~-----~~~---~~~~~~~~~~~ik~~ 294 (371)
+. ..-.+.+...++.....+.|++- ++||... . .. ..+ ....+......+...
T Consensus 119 ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ 198 (247)
T PRK13957 119 EARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAF 198 (247)
T ss_pred HHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhh
Confidence 00 00112345666777777888775 4766421 0 00 000 011112234455665
Q ss_pred cC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 295 FD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 295 ~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
++ ..+|+-+|+ |++++..+.. + +|.|-+|..++..++....+++
T Consensus 199 ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 199 LPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHHHH
Confidence 53 346777888 9999998764 5 9999999999999998777653
No 352
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.52 E-value=0.59 Score=44.51 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc
Q 017448 150 PLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER 229 (371)
Q Consensus 150 ~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~ 229 (371)
.+..+.++++++ ...+.|.|||-+.+.-| +|. -=|.+.|.+++..++++++ |..+
T Consensus 17 ~iD~~~l~~lv~-------~~~~~Gv~gi~v~GstG----E~~-----------~Ls~~Er~~l~~~~~~~~~---g~~p 71 (294)
T TIGR02313 17 DIDEEALRELIE-------FQIEGGSHAISVGGTSG----EPG-----------SLTLEERKQAIENAIDQIA---GRIP 71 (294)
T ss_pred CcCHHHHHHHHH-------HHHHcCCCEEEECccCc----ccc-----------cCCHHHHHHHHHHHHHHhC---CCCc
Confidence 355555555544 44568999999877654 111 1245777776666555543 2224
Q ss_pred cEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEe------e
Q 017448 230 VGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIA------S 302 (371)
Q Consensus 230 i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~------~ 302 (371)
|.+=+. ....++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+++ +.||+. +
T Consensus 72 vi~gv~----------~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~--~~~l~~~f~~ia~a~~~lpv~iYn~P~~t 139 (294)
T TIGR02313 72 FAPGTG----------ALNHDETLELTKFAEEAGADAAMVIVPYYNKPN--QEALYDHFAEVADAVPDFPIIIYNIPGRA 139 (294)
T ss_pred EEEECC----------cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCC--HHHHHHHHHHHHHhccCCCEEEEeCchhc
Confidence 433222 234667899999999999999998877654332 122234566788888 789663 2
Q ss_pred CC-CCHHHHHHHHH
Q 017448 303 GG-YNRDDGNKAVA 315 (371)
Q Consensus 303 Gg-it~~~a~~~l~ 315 (371)
|. ++++...++.+
T Consensus 140 g~~l~~~~l~~L~~ 153 (294)
T TIGR02313 140 AQEIAPKTMARLRK 153 (294)
T ss_pred CcCCCHHHHHHHHh
Confidence 33 37888787775
No 353
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.48 E-value=0.96 Score=41.85 Aligned_cols=154 Identities=16% Similarity=0.078 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.-.|+.+.++|||++-+-+ +.++-.+ -..|.--=++ .-.++.++.|.+.+. -||.+.+..
T Consensus 19 ~~sA~~~e~~G~~ai~~s~---~~~~~s~-----G~pD~~~~~~----~e~~~~~~~I~~~~~-~Pv~~D~~~------- 78 (243)
T cd00377 19 ALSARLAERAGFKAIYTSG---AGVAASL-----GLPDGGLLTL----DEVLAAVRRIARAVD-LPVIADADT------- 78 (243)
T ss_pred HHHHHHHHHcCCCEEEecc---HHHHHhc-----CCCCCCcCCH----HHHHHHHHHHHhhcc-CCEEEEcCC-------
Confidence 4678889999999999753 3333222 1112101112 223455555555552 266665543
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-C-CCC---CC---chhhHhHHHhcCC----CeEee--------C
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-D-KLD---AP---PYSLLPMRKAFDG----TFIAS--------G 303 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~-~~~---~~---~~~~~~ik~~~~~----pVi~~--------G 303 (371)
+.++. +.+.+.++.+.+.|++.+++-........ . ... .. ...++.+++..+. +|++- .
T Consensus 79 G~g~~-~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 79 GYGNA-LNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCH-HHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 22333 66778899999999999999554322110 0 000 11 1123344444443 34433 2
Q ss_pred CC--CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 304 GY--NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 304 gi--t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
++ ..+.++.+.+.| +|+|.+--+ .+++.++++.+.
T Consensus 158 ~~~eai~Ra~ay~~AG-AD~v~v~~~--~~~~~~~~~~~~ 194 (243)
T cd00377 158 GLDEAIERAKAYAEAG-ADGIFVEGL--KDPEEIRAFAEA 194 (243)
T ss_pred CHHHHHHHHHHHHHcC-CCEEEeCCC--CCHHHHHHHHhc
Confidence 33 245677788888 999998533 388888888876
No 354
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.48 E-value=0.8 Score=43.40 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=75.1
Q ss_pred HHHHHHHHHHc-CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKA-GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~a-G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
+.+-++...+. |.+||-+.+.-| +|.+ =+.+.|.+++..++++++ |.-+|.+=++
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstG----E~~~-----------Lt~~Er~~~~~~~~~~~~---~~~~viagv~------ 78 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTG----EGFL-----------LSVEERKQIAEIVAEAAK---GKVTLIAHVG------ 78 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCc----Cccc-----------CCHHHHHHHHHHHHHHhC---CCCeEEeccC------
Confidence 44444555667 999999876654 2211 124666666555555443 2224443222
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEe------eCC-CCHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIA------SGG-YNRDDGNKA 313 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~------~Gg-it~~~a~~~ 313 (371)
....++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+++ +.||+. +|. ++++...++
T Consensus 79 ----~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~--~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L 152 (288)
T cd00954 79 ----SLNLKESQELAKHAEELGYDAISAITPFYYKFS--FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLEL 152 (288)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHH
Confidence 224567899999999999999988777654322 112334566788888 788663 343 378877777
Q ss_pred HH
Q 017448 314 VA 315 (371)
Q Consensus 314 l~ 315 (371)
.+
T Consensus 153 ~~ 154 (288)
T cd00954 153 FE 154 (288)
T ss_pred hc
Confidence 75
No 355
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.45 E-value=0.5 Score=45.37 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
+.+-.....+.|.+||-+.+.-|- |. -=+.+.|.+++..+++ .++.+ +|.+=+..
T Consensus 31 l~~lv~~li~~Gv~Gi~v~GstGE----~~-----------~Lt~eEr~~v~~~~~~----~~~grvpvi~Gv~~----- 86 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTFGE----CA-----------TLTWEEKQAFVATVVE----TVAGRVPVFVGATT----- 86 (309)
T ss_pred HHHHHHHHHHcCCCEEEECccccc----ch-----------hCCHHHHHHHHHHHHH----HhCCCCCEEEEecc-----
Confidence 334444556699999998877651 11 1135666655555444 44433 55443332
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEee------C-CCCHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIAS------G-GYNRDDGNKA 313 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~------G-git~~~a~~~ 313 (371)
...++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+++ ++||+.- | .++++...++
T Consensus 87 -----~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~--~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L 159 (309)
T cd00952 87 -----LNTRDTIARTRALLDLGADGTMLGRPMWLPLD--VDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAEL 159 (309)
T ss_pred -----CCHHHHHHHHHHHHHhCCCEEEECCCcCCCCC--HHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHH
Confidence 24567899999999999999998877654322 112234556677777 5786532 3 2366666666
Q ss_pred H
Q 017448 314 V 314 (371)
Q Consensus 314 l 314 (371)
.
T Consensus 160 ~ 160 (309)
T cd00952 160 A 160 (309)
T ss_pred h
Confidence 5
No 356
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.44 E-value=0.1 Score=46.59 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEech
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR 326 (371)
+.+++..+++.|.+.|+..++|+..+ +...+.++.+++.++.-+++.|.+ |.++++++++.| ++|+.-=
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t--------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivSP- 87 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRT--------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVSP- 87 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTS--------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEES-
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCC--------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEECC-
Confidence 34568899999999999999997652 123466777888887778899987 999999999999 8988763
Q ss_pred HhhhCCcHHHHHHh
Q 017448 327 SFLANPDLPKRFEL 340 (371)
Q Consensus 327 ~~ladP~l~~k~~~ 340 (371)
-.||++.+..++
T Consensus 88 --~~~~~v~~~~~~ 99 (196)
T PF01081_consen 88 --GFDPEVIEYARE 99 (196)
T ss_dssp --S--HHHHHHHHH
T ss_pred --CCCHHHHHHHHH
Confidence 367777766554
No 357
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.43 E-value=0.91 Score=43.16 Aligned_cols=155 Identities=13% Similarity=0.071 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+-+|+.+.++||++|-+.+. -++.. ..--.|. | +.. ..-.++.++.|.+++. -||.+.+..
T Consensus 27 a~SAri~e~~Gf~ai~~Sg~---~~a~~----~lG~PD~--g-~l~-~~e~~~~~~~I~~~~~-iPviaD~d~------- 87 (292)
T PRK11320 27 AYHALLAERAGFKAIYLSGG---GVAAA----SLGLPDL--G-ITT-LDDVLIDVRRITDACD-LPLLVDIDT------- 87 (292)
T ss_pred HHHHHHHHHcCCCEEEeCHH---HHHhH----hcCCCCC--C-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 56889999999999987543 22210 1112231 1 111 1223555555555553 278776543
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC-CC-CC---CCCchhhHhHHHhc----CCCeEeeCCCC--------
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNA-QD-KL---DAPPYSLLPMRKAF----DGTFIASGGYN-------- 306 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~-~~-~~---~~~~~~~~~ik~~~----~~pVi~~Ggit-------- 306 (371)
+.+ ........+++++++|+..|||......+. .. .. .+...++.+|+.+. +.+++.+-+-+
T Consensus 88 GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 166 (292)
T PRK11320 88 GFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLD 166 (292)
T ss_pred CCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHH
Confidence 223 345677889999999999999966432111 00 01 11123344444332 23455444321
Q ss_pred --HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 307 --RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 307 --~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
.+.+....+.| +|+|.+- .+.+++.++++.+-
T Consensus 167 eAI~Ra~aY~eAG-AD~ifi~--~~~~~~~i~~~~~~ 200 (292)
T PRK11320 167 AAIERAQAYVEAG-ADMIFPE--AMTELEMYRRFADA 200 (292)
T ss_pred HHHHHHHHHHHcC-CCEEEec--CCCCHHHHHHHHHh
Confidence 24456677777 9999994 46788888888774
No 358
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.42 E-value=0.11 Score=50.48 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+.++.|.++|+|+|.|....-.. ......++.||+.++ +|||+ |++ |.+.++.+++.| +|.|=+|
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s-----~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~aG-ad~vkVG 177 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHS-----EHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLIDAG-ADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTS-----HHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHHTT--SEEEES
T ss_pred HHHHHHHHHHcCCCEEEccccCccH-----HHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHHcC-CCEEEEe
Confidence 3567888889999999875432110 112346788999987 66664 666 999999999999 9998766
No 359
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=94.41 E-value=0.94 Score=43.03 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=75.2
Q ss_pred HHHHHHHHHH-cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 163 FRLAGRNAIK-AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 163 f~~aA~~a~~-aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
+.+-.....+ +|.+||-+.+.-| +|.+ =|.+.|.+++..+++. ++.. +|.+=++
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstG----E~~~-----------Ls~eEr~~~~~~~~~~----~~~~~~viagvg----- 81 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTG----EAFL-----------LSTEEKKQVLEIVAEE----AKGKVKLIAQVG----- 81 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCcc----cccc-----------CCHHHHHHHHHHHHHH----hCCCCCEEecCC-----
Confidence 3344445566 9999999877553 2221 1346666665555544 4333 4443222
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee------CC-CCHHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS------GG-YNRDDGNKA 313 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~------Gg-it~~~a~~~ 313 (371)
....++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+.++.||+.- |. ++++...++
T Consensus 82 -----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~--~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L 154 (293)
T PRK04147 82 -----SVNTAEAQELAKYATELGYDAISAVTPFYYPFS--FEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNEL 154 (293)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC--HHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHH
Confidence 234677899999999999999998877654322 1122345667777888896643 33 377877777
Q ss_pred HH
Q 017448 314 VA 315 (371)
Q Consensus 314 l~ 315 (371)
.+
T Consensus 155 ~~ 156 (293)
T PRK04147 155 FT 156 (293)
T ss_pred hc
Confidence 64
No 360
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.39 E-value=1.1 Score=42.48 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+-+|+.+.++||++|-+.+.. ++--+ --.|. | +.. ..-.++.++.|.+++. -||.+.+-.
T Consensus 23 a~SAri~e~aGf~Ai~~sg~~---~a~~l-----G~pD~--g-~lt-~~e~~~~~~~I~~~~~-iPviaD~d~------- 82 (285)
T TIGR02317 23 AMAALLAERAGFEAIYLSGAA---VAASL-----GLPDL--G-ITT-LDEVAEDARRITRVTD-LPLLVDADT------- 82 (285)
T ss_pred HHHHHHHHHcCCCEEEEcHHH---HHHhC-----CCCCC--C-CCC-HHHHHHHHHHHHhccC-CCEEEECCC-------
Confidence 578899999999999975432 33211 12231 1 111 1123444555555553 278776543
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC-CC-CC---CCCchhhHhHH---HhcC-CCeEeeCCCC--------
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNA-QD-KL---DAPPYSLLPMR---KAFD-GTFIASGGYN-------- 306 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~-~~-~~---~~~~~~~~~ik---~~~~-~pVi~~Ggit-------- 306 (371)
+.++ .......++.++++|+..|+|......+. .. .. .+...++.+|+ ++.. .+++.+.+.+
T Consensus 83 GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 83 GFGE-AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred CCCC-HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 2244 45567889999999999999966432110 00 11 11122344444 3333 3455544431
Q ss_pred --HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCC
Q 017448 307 --RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNA 342 (371)
Q Consensus 307 --~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~ 342 (371)
.+.+....+.| +|+|.+ +.+.+++.++++.+.-
T Consensus 162 eAI~Ra~ay~~AG-AD~vfi--~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 162 AAIERAKAYVEAG-ADMIFP--EALTSLEEFRQFAKAV 196 (285)
T ss_pred HHHHHHHHHHHcC-CCEEEe--CCCCCHHHHHHHHHhc
Confidence 23455666777 999998 4467888888887764
No 361
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=94.37 E-value=0.56 Score=44.68 Aligned_cols=142 Identities=9% Similarity=-0.011 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcc-cCC--CCCCCCchhhhhHH----HHHHHHHHHHHhC--CcccEEEEc
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQV-NDR--TDQYGGSLENRCRF----ALEIVEAVVNEIG--AERVGIRLS 235 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~-N~R--~D~yGgs~enR~r~----~~eiv~avR~~vg--~~~i~vrl~ 235 (371)
+.++.+.++||.+|.+..-.- .|+. |.+ --+...++.|+.-+ +.+.++.+++... +.++.+-+.
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~-------~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~ 99 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTL-------EPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVA 99 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCC-------CCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEec
Confidence 444555679999999865431 1222 222 12223445554311 1233444433332 226777665
Q ss_pred CccCcCcCCCCChHHHHHHHHHHHhhcC-ccEEEEcCCCcccCC--C----CCCCCchhhHhHHHhcCCCeEeeCC--C-
Q 017448 236 PHANYMEAQDSNPEALGLYMAKALNKYQ-ILYLHILEPRLFNAQ--D----KLDAPPYSLLPMRKAFDGTFIASGG--Y- 305 (371)
Q Consensus 236 ~~~~~~~~~~~~~~e~~~~la~~l~~~G-vd~l~v~~~~~~~~~--~----~~~~~~~~~~~ik~~~~~pVi~~Gg--i- 305 (371)
. .+.+++.+.++.++++| +|+|++....-.... . .+......++.||+.+++||++=-. +
T Consensus 100 g----------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 100 G----------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred c----------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 3 24677889999999999 999988432111000 0 0011123466788888889775322 3
Q ss_pred CHHH-HHHHHHcCCccEEEe
Q 017448 306 NRDD-GNKAVAENYTDLVAY 324 (371)
Q Consensus 306 t~~~-a~~~l~~g~~D~V~~ 324 (371)
+..+ ++.+.+.| +|+|.+
T Consensus 170 ~~~~~a~~l~~~G-~d~i~~ 188 (301)
T PRK07259 170 DIVEIAKAAEEAG-ADGLSL 188 (301)
T ss_pred hHHHHHHHHHHcC-CCEEEE
Confidence 2223 44444455 998765
No 362
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.36 E-value=0.82 Score=43.19 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=52.2
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCCCCC----chhhHhHHHhcCCCeEe--
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKLDAP----PYSLLPMRKAFDGTFIA-- 301 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~~~~----~~~~~~ik~~~~~pVi~-- 301 (371)
++.+-|.. ...+++.+.++.+++.|+|+|++....-.... .....+ ...++.+|+.++.||++
T Consensus 100 pvi~si~g----------~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl 169 (289)
T cd02810 100 PLIASVGG----------SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKL 169 (289)
T ss_pred eEEEEecc----------CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEe
Confidence 66665543 13567888999999999999988654211110 000111 13466788888888663
Q ss_pred eCCCCH----HHHHHHHHcCCccEEEec
Q 017448 302 SGGYNR----DDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 302 ~Ggit~----~~a~~~l~~g~~D~V~~g 325 (371)
.++++. +.++.+.+.| +|+|.+.
T Consensus 170 ~~~~~~~~~~~~a~~l~~~G-ad~i~~~ 196 (289)
T cd02810 170 SPYFDLEDIVELAKAAERAG-ADGLTAI 196 (289)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCEEEEE
Confidence 344563 3345555556 9999974
No 363
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.31 E-value=0.29 Score=46.16 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=67.2
Q ss_pred ccCCCCCCCCc--hhhhhHH-------HHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCcc
Q 017448 196 VNDRTDQYGGS--LENRCRF-------ALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQIL 265 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~-------~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd 265 (371)
.|+|-+-+-+- .+|..++ +.+.|+.+|+..+.. .|.|-.. +.+++ .+..++|+|
T Consensus 152 ~~HR~gLsd~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~------------slee~----~ea~~~gaD 215 (281)
T PRK06543 152 HNHRYSLSDAVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVD------------RLDQI----EPVLAAGVD 215 (281)
T ss_pred cCcCCCCCceEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeC------------CHHHH----HHHHhcCCC
Confidence 56777666554 3566665 356777777777632 4554332 23333 334468999
Q ss_pred EEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhC
Q 017448 266 YLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLAN 331 (371)
Q Consensus 266 ~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~lad 331 (371)
.|-+..-+ +.........+++ ...+.+.||+|.+.+.+....| +|+|++|.....=
T Consensus 216 iImLDn~s-------~e~l~~av~~~~~--~~~leaSGgI~~~ni~~yA~tG-VD~Is~galths~ 271 (281)
T PRK06543 216 TIMLDNFS-------LDDLREGVELVDG--RAIVEASGNVNLNTVGAIASTG-VDVISVGALTHSV 271 (281)
T ss_pred EEEECCCC-------HHHHHHHHHHhCC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCC
Confidence 88763321 1111112222222 2358899999999999999988 9999999755443
No 364
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.29 E-value=0.5 Score=44.75 Aligned_cols=124 Identities=18% Similarity=0.214 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+.+.+-+....++|.||+-+.+..| +|.+ =|.+.|.++ ++.+++.++.+ +|.+=++.
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstG----E~~~-----------Lt~~Er~~l----~~~~~~~~~~~~~vi~gv~~--- 79 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTG----EFYS-----------LTDEERKEL----LEIVVEAAAGRVPVIAGVGA--- 79 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTT----TGGG-----------S-HHHHHHH----HHHHHHHHTTSSEEEEEEES---
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCc----cccc-----------CCHHHHHHH----HHHHHHHccCceEEEecCcc---
Confidence 3455555666688999999877654 2221 124555555 44555555544 56554443
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee------CC-CCHHHHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS------GG-YNRDDGNK 312 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~------Gg-it~~~a~~ 312 (371)
.+.++++++++..++.|+|.+-+..|.+.... ......+.+.|.+.++.|++.- |. ++++...+
T Consensus 80 -------~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s--~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~ 150 (289)
T PF00701_consen 80 -------NSTEEAIELARHAQDAGADAVLVIPPYYFKPS--QEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLAR 150 (289)
T ss_dssp -------SSHHHHHHHHHHHHHTT-SEEEEEESTSSSCC--HHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHH
T ss_pred -------hhHHHHHHHHHHHhhcCceEEEEeccccccch--hhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHH
Confidence 24677999999999999999988777554322 1112345566778888886532 32 36777777
Q ss_pred HHH
Q 017448 313 AVA 315 (371)
Q Consensus 313 ~l~ 315 (371)
+.+
T Consensus 151 L~~ 153 (289)
T PF00701_consen 151 LAK 153 (289)
T ss_dssp HHT
T ss_pred Hhc
Confidence 665
No 365
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=94.28 E-value=0.75 Score=43.71 Aligned_cols=167 Identities=11% Similarity=0.054 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN 239 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~ 239 (371)
++...+.++.+.+.|..+|-|.+-- .+..+|+.|-.--|---++..-|++||+++++-.|...+...++
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~lFgv~-----------~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~Y 121 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVALFPVT-----------PPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPY 121 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-----------CcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 3555677788889999999986532 23457888876556566788999999999964345545544332
Q ss_pred cC----cCC------CCChHHHHHHHHHHHhhcCccEEEEcC---CCcc-------cCCCCCCCC--------chhhHhH
Q 017448 240 YM----EAQ------DSNPEALGLYMAKALNKYQILYLHILE---PRLF-------NAQDKLDAP--------PYSLLPM 291 (371)
Q Consensus 240 ~~----~~~------~~~~~e~~~~la~~l~~~Gvd~l~v~~---~~~~-------~~~~~~~~~--------~~~~~~i 291 (371)
.. +.. .+.+.+...+++-...++|+|.|.-|. +... ......... ..+...+
T Consensus 122 T~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPF 201 (320)
T cd04823 122 TSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPF 201 (320)
T ss_pred CCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchh
Confidence 21 111 122455555666677899999886443 1100 000000001 1122346
Q ss_pred HHhcCC-CeEeeCCC-----C-------HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 292 RKAFDG-TFIASGGY-----N-------RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 292 k~~~~~-pVi~~Ggi-----t-------~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
|++.+. |-. |.- + ..+++.-+++| +|+||+ .|.+..=|+++.+++.
T Consensus 202 RdAa~Sap~f--gDRksYQmdp~n~~eAlre~~~Di~EG-AD~lMV-KPal~YLDIi~~~k~~ 260 (320)
T cd04823 202 RDALGSAPRK--GDKKTYQMDPANSREALREVALDIAEG-ADMVMV-KPGMPYLDIIRRVKDE 260 (320)
T ss_pred HHHhcCCCCC--CCccccCCCCCCHHHHHHHHHhhHHhC-CCEEEE-cCCchHHHHHHHHHHh
Confidence 666543 322 211 1 23456677888 998876 6777888999998874
No 366
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=94.24 E-value=2.1 Score=39.88 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEE
Q 017448 155 EIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRL 234 (371)
Q Consensus 155 eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl 234 (371)
++++|++.-.+-|+..+++|+|||-|-==+. -|+ .++.+ -.....+--++.+||+.++ -|+||-+
T Consensus 23 ~~~~iie~A~~ea~~l~~~GvDgiiveN~~D-------~Py-~~~~~------~etvaaM~~i~~~v~~~~~-~p~GVnv 87 (254)
T PF03437_consen 23 SMEEIIERAVREAEALEEGGVDGIIVENMGD-------VPY-PKRVG------PETVAAMARIAREVRREVS-VPVGVNV 87 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEecCCC-------CCc-cCCCC------HHHHHHHHHHHHHHHHhCC-CCEEeee
Confidence 8999999999999999999999997632111 122 11111 2234556678888888884 3788855
Q ss_pred cCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCc--hhhHhHHHhcC--CCeEee--------
Q 017448 235 SPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPP--YSLLPMRKAFD--GTFIAS-------- 302 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~--~~~~~ik~~~~--~pVi~~-------- 302 (371)
-. .+.. .++.+|. ..|.||+-+.........+.+..+. .-+-+.|+.++ +.|++.
T Consensus 88 L~---------nd~~-aalaiA~---A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~ 154 (254)
T PF03437_consen 88 LR---------NDPK-AALAIAA---ATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSP 154 (254)
T ss_pred ec---------CCCH-HHHHHHH---HhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhccc
Confidence 43 1222 2444543 4588999753321111110111111 22334555554 333321
Q ss_pred -CCCCH-HHHHHHHHcCCccEEEechHhh---hCCcHHHHHHhCCC
Q 017448 303 -GGYNR-DDGNKAVAENYTDLVAYGRSFL---ANPDLPKRFELNAA 343 (371)
Q Consensus 303 -Ggit~-~~a~~~l~~g~~D~V~~gR~~l---adP~l~~k~~~g~~ 343 (371)
+.-+. +.++.+++.+.+|.|.+.=... .+|+.++++++..+
T Consensus 155 l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~ 200 (254)
T PF03437_consen 155 LATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP 200 (254)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC
Confidence 01112 4566777888899998865544 34456677777654
No 367
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=94.24 E-value=0.2 Score=50.17 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhhCCc
Q 017448 296 DGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 296 ~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
++||++.||| |++.+..++.-| +|+|.+|..+++-++
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~E 261 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTVE 261 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCcc
Confidence 6889999999 999999999999 999999999999664
No 368
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=93.98 E-value=0.86 Score=46.10 Aligned_cols=134 Identities=19% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEE
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRL 234 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl 234 (371)
.+++.| .++|.+.|.|-+.|--++ |..+-+...++++|+. |.. .|++..
T Consensus 105 dvv~~f---v~~a~~~Gidi~Rifd~l------------------------nd~~n~~~ai~~ak~~-G~~~~~~i~yt~ 156 (468)
T PRK12581 105 DIVDKF---ISLSAQNGIDVFRIFDAL------------------------NDPRNIQQALRAVKKT-GKEAQLCIAYTT 156 (468)
T ss_pred hHHHHH---HHHHHHCCCCEEEEcccC------------------------CCHHHHHHHHHHHHHc-CCEEEEEEEEEe
Confidence 455556 566778999999986544 3366678888888774 333 245555
Q ss_pred cCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHH
Q 017448 235 SPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDD 309 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~ 309 (371)
++ ..+.+...++++.+++.|+|.|.+.... +.. .+.......+.+|+..++||-. ... | ...
T Consensus 157 sp---------~~t~~y~~~~a~~l~~~Gad~I~IkDta-G~l--~P~~v~~Lv~alk~~~~~pi~~-H~Hnt~GlA~An 223 (468)
T PRK12581 157 SP---------VHTLNYYLSLVKELVEMGADSICIKDMA-GIL--TPKAAKELVSGIKAMTNLPLIV-HTHATSGISQMT 223 (468)
T ss_pred CC---------cCcHHHHHHHHHHHHHcCCCEEEECCCC-CCc--CHHHHHHHHHHHHhccCCeEEE-EeCCCCccHHHH
Confidence 54 2367778899999999999999986532 111 1122334667788877777533 333 3 567
Q ss_pred HHHHHHcCCccEEE-----echHhhhCCcH
Q 017448 310 GNKAVAENYTDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 310 a~~~l~~g~~D~V~-----~gR~~ladP~l 334 (371)
...+++.| ||.|- ||++. .||.+
T Consensus 224 ~laAieAG-ad~vD~ai~g~g~ga-gN~~t 251 (468)
T PRK12581 224 YLAAVEAG-ADRIDTALSPFSEGT-SQPAT 251 (468)
T ss_pred HHHHHHcC-CCEEEeeccccCCCc-CChhH
Confidence 78899998 77763 55553 46643
No 369
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.91 E-value=1.4 Score=40.69 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc--ccEEEEcCccC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE--RVGIRLSPHAN 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~--~i~vrl~~~~~ 239 (371)
...+.+++..++|+-||.|-=. |...-+..+. -..-..+-|++++++..+. .|..|....-.
T Consensus 86 ~v~~tv~~~~~aG~agi~IEDq---------------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~ 149 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIEDQ---------------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLR 149 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEESB---------------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCH
T ss_pred HHHHHHHHHHHcCCcEEEeecc---------------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEEEEEecccccc
Confidence 4677888889999999988543 1111122233 2344455566666666543 46677765210
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCc
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYT 319 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~ 319 (371)
.....+++++-++...++|+|.+-+... .....++.+.+.++.|+.++-.-..-..+++-+-| +
T Consensus 150 -----~~~~~deaI~R~~aY~eAGAD~ifi~~~----------~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lG-v 213 (238)
T PF13714_consen 150 -----AEEGLDEAIERAKAYAEAGADMIFIPGL----------QSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELG-V 213 (238)
T ss_dssp -----HHHHHHHHHHHHHHHHHTT-SEEEETTS----------SSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTT-E
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEeCCC----------CCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCC-C
Confidence 1236788999999999999999987432 23345777888889996655432124566667777 9
Q ss_pred cEEEechHhh
Q 017448 320 DLVAYGRSFL 329 (371)
Q Consensus 320 D~V~~gR~~l 329 (371)
.+|.++-.++
T Consensus 214 ~~v~~~~~~~ 223 (238)
T PF13714_consen 214 KRVSYGNSLL 223 (238)
T ss_dssp SEEEETSHHH
T ss_pred cEEEEcHHHH
Confidence 9999876554
No 370
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=93.91 E-value=1.7 Score=39.24 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 295 FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 295 ~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
++.|++..||+++++..++++.-...+|=+..++=..|
T Consensus 153 ~~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 153 LAKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAP 190 (210)
T ss_pred cCCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCC
Confidence 36799999999999999999874577777776665444
No 371
>PRK06852 aldolase; Validated
Probab=93.90 E-value=2.3 Score=40.62 Aligned_cols=151 Identities=14% Similarity=-0.003 Sum_probs=85.9
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRL 165 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 165 (371)
.+.+..+.++++.+|++|-++++-..--|..- . + ... .+..+.
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i-----------------~-----~---~~~------------~~~ia~ 192 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV-----------------K-----D---EKD------------PHLIAG 192 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCccc-----------------C-----C---Ccc------------HHHHHH
Confidence 56788899999999999998877332212110 0 0 011 135688
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~ 245 (371)
+|+.|.|.|+|.|++... +++-+|+. |-++.|-+.+|+-||.+.=.+
T Consensus 193 aaRiaaELGADIVKv~y~----------------~~~~~g~~--------e~f~~vv~~~g~vpVviaGG~--------- 239 (304)
T PRK06852 193 AAGVAACLGADFVKVNYP----------------KKEGANPA--------ELFKEAVLAAGRTKVVCAGGS--------- 239 (304)
T ss_pred HHHHHHHHcCCEEEecCC----------------CcCCCCCH--------HHHHHHHHhCCCCcEEEeCCC---------
Confidence 999999999999997542 12222332 223333445665555543222
Q ss_pred CChHHHHHHHHHHHhh-cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHH
Q 017448 246 SNPEALGLYMAKALNK-YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVA 315 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~ 315 (371)
..+.+++++.++...+ .|...+.+ .++.++.. .+.-...++.|...+ -++.+.++|.++++
T Consensus 240 k~~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~--~p~~~~~~~Ai~~IV------H~~~s~~eA~~~~~ 301 (304)
T PRK06852 240 STDPEEFLKQLYEQIHISGASGNAT-GRNIHQKP--LDEAVRMCNAIYAIT------VEDKSVEEALKIYN 301 (304)
T ss_pred CCCHHHHHHHHHHHHHHcCCceeee-chhhhcCC--CchHHHHHHHHHHHH------hCCCCHHHHHHHhc
Confidence 1134556777776655 88887775 44544332 111123445555543 35568888877654
No 372
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.84 E-value=0.89 Score=43.18 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcC-CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCc
Q 017448 163 FRLAGRNAIKAG-FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANY 240 (371)
Q Consensus 163 f~~aA~~a~~aG-~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~ 240 (371)
+.+-.+...+.| .|||-+.+.-| +| +-=+.|.|.+++..+++. ++.. +|.+=++
T Consensus 23 ~~~~i~~~i~~G~v~gi~~~GstG----E~-----------~~Lt~eEr~~~~~~~~~~----~~~~~pvi~gv~----- 78 (290)
T TIGR00683 23 LRQIIRHNIDKMKVDGLYVGGSTG----EN-----------FMLSTEEKKEIFRIAKDE----AKDQIALIAQVG----- 78 (290)
T ss_pred HHHHHHHHHhCCCcCEEEECCccc----cc-----------ccCCHHHHHHHHHHHHHH----hCCCCcEEEecC-----
Confidence 344445557789 99999877654 11 112456776665554444 4333 5444222
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEe------eCC-CCHHHHHH
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIA------SGG-YNRDDGNK 312 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~------~Gg-it~~~a~~ 312 (371)
....++++++++..++.|+|.+-+..|.+..+. ......+.+.|.+.. +.||+. +|. ++++...+
T Consensus 79 -----~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~--~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~ 151 (290)
T TIGR00683 79 -----SVNLKEAVELGKYATELGYDCLSAVTPFYYKFS--FPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGE 151 (290)
T ss_pred -----CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCC--HHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHH
Confidence 224567899999999999999998777654332 112233455665555 578652 243 47787777
Q ss_pred HHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 313 AVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 313 ~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
+.+.. -++++ .-.-.|+....+++.
T Consensus 152 L~~~p--nv~gi-K~s~~d~~~~~~~~~ 176 (290)
T TIGR00683 152 LYKNP--KVLGV-KFTAGDFYLLERLKK 176 (290)
T ss_pred HhcCC--CEEEE-EeCCCCHHHHHHHHH
Confidence 77533 33333 112234444455543
No 373
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.84 E-value=0.31 Score=45.98 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHH
Q 017448 214 ALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRK 293 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~ 293 (371)
+.+.++++|+..+...|.|-+. +.++ +++..++|+|.|-+..-+ +.......+.+++
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~------------tlee----a~ea~~~GaDiI~lDn~~-------~e~l~~~v~~l~~ 231 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEAD------------TIEQ----ALTVLQASPDILQLDKFT-------PQQLHHLHERLKF 231 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECC------------CHHH----HHHHHHcCcCEEEECCCC-------HHHHHHHHHHHhc
Confidence 4578888888776444555332 2333 344557899999875321 1111222333332
Q ss_pred h-cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 294 A-FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 294 ~-~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
. -++.+.+.||++++.+.++.+.| +|++++|-...+.|
T Consensus 232 ~~~~~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~ 270 (277)
T TIGR01334 232 FDHIPTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP 270 (277)
T ss_pred cCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence 1 23458899999999999999998 99999987665555
No 374
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.82 E-value=0.31 Score=44.19 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCC-C--eEeeCCC-CHHHHHHHHHcCCccEEE
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDG-T--FIASGGY-NRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~-p--Vi~~Ggi-t~~~a~~~l~~g~~D~V~ 323 (371)
+.+++..+++.|.+.|+..++|+..+ +.....++.+++.++. | +++.|-+ |.++++++++.| ++|+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~--------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fiv 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTN--------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIV 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC--------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEE
Confidence 46778999999999999999997652 1234567888887753 3 6788887 999999999999 99988
Q ss_pred echHhhhCCcHHHHHHh
Q 017448 324 YGRSFLANPDLPKRFEL 340 (371)
Q Consensus 324 ~gR~~ladP~l~~k~~~ 340 (371)
- | -.||++.+..++
T Consensus 94 s--P-~~~~~v~~~~~~ 107 (213)
T PRK06552 94 S--P-SFNRETAKICNL 107 (213)
T ss_pred C--C-CCCHHHHHHHHH
Confidence 3 2 467777776655
No 375
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=93.79 E-value=1.1 Score=42.65 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+...+.++.+.+.|..+|-|.+- ...+|+.|-.--|---++..-|++||+++++-.|...+...++.
T Consensus 59 d~l~~~v~~~~~~Gi~av~LFgv-------------~~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT 125 (323)
T PRK09283 59 DLLVKEAEEAVELGIPAVALFGV-------------PELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYT 125 (323)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCc-------------CCCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCC
Confidence 44566778888999999998643 24478888765565667889999999999543455455443221
Q ss_pred C----cC---C---CCChHHHHHHHHHHHhhcCccEEEEcC---CCcc-------cCCCCCCCC--------chhhHhHH
Q 017448 241 M----EA---Q---DSNPEALGLYMAKALNKYQILYLHILE---PRLF-------NAQDKLDAP--------PYSLLPMR 292 (371)
Q Consensus 241 ~----~~---~---~~~~~e~~~~la~~l~~~Gvd~l~v~~---~~~~-------~~~~~~~~~--------~~~~~~ik 292 (371)
. +. + .+.+.+...+.+-...++|+|.|.-|. +... ......... ..+...+|
T Consensus 126 ~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFR 205 (323)
T PRK09283 126 SHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFR 205 (323)
T ss_pred CCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHH
Confidence 1 11 1 123555556667777899999986443 1100 000000001 11223567
Q ss_pred HhcCC-CeEeeCCC-C-----------HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 293 KAFDG-TFIASGGY-N-----------RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 293 ~~~~~-pVi~~Ggi-t-----------~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
++++. |-. |.- | ..+++.-+++| +|+||+ .|.+..=|+++++++-
T Consensus 206 dA~~Sap~~--gDrktYQmdp~n~~eAlre~~~D~~EG-AD~lMV-KPal~YLDIi~~~k~~ 263 (323)
T PRK09283 206 DAAGSAPQF--GDRKTYQMDPANRREALREVALDIEEG-ADMVMV-KPALPYLDIIRRVKDE 263 (323)
T ss_pred HHHhcCCCC--CCccccCCCCCCHHHHHHHHHhhHHhC-CCEEEE-cCCchHHHHHHHHHhc
Confidence 76643 322 221 1 13455667788 998876 5777777999999885
No 376
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=93.78 E-value=1.1 Score=42.43 Aligned_cols=171 Identities=13% Similarity=0.081 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN 239 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~ 239 (371)
++..++.++.+.+.|..+|-|.+- . ..+|..|-.--|---++..-|++||+++++-.|...+...++
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~LFgv------------~-~~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~Y 116 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVILFGI------------P-EHKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEY 116 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECC------------C-CCCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 355677788889999999998642 1 236777766555556788899999999964345555544332
Q ss_pred cC----cCC------CCChHHHHHHHHHHHhhcCccEEEEcC---CCcc-------cCCCCCCCC--------chhhHhH
Q 017448 240 YM----EAQ------DSNPEALGLYMAKALNKYQILYLHILE---PRLF-------NAQDKLDAP--------PYSLLPM 291 (371)
Q Consensus 240 ~~----~~~------~~~~~e~~~~la~~l~~~Gvd~l~v~~---~~~~-------~~~~~~~~~--------~~~~~~i 291 (371)
.. +.. ++.+.+.....+-...++|+|.|.-|. +... ......... ..+...+
T Consensus 117 T~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPF 196 (314)
T cd00384 117 TDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPF 196 (314)
T ss_pred CCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchH
Confidence 21 111 122455555666677899999886443 1100 000000001 1122346
Q ss_pred HHhcC-CCeEeeCCC-C-----------HHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC--CCCCCC
Q 017448 292 RKAFD-GTFIASGGY-N-----------RDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN--AALNKY 347 (371)
Q Consensus 292 k~~~~-~pVi~~Ggi-t-----------~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g--~~~~~~ 347 (371)
|++++ .|-. |.- | ..+++.-+++| +|+||+ .|.+..=|+++++++- .|+.-|
T Consensus 197 RdAa~Sap~~--gDRktYQmdpan~~eAlre~~~D~~EG-AD~lMV-KPal~YLDIi~~~k~~~~~PvaaY 263 (314)
T cd00384 197 RDAADSAPSF--GDRKTYQMDPANRREALREVELDIEEG-ADILMV-KPALAYLDIIRDVRERFDLPVAAY 263 (314)
T ss_pred HHHhhcCCCC--CCccccCCCCCCHHHHHHHHHhhHHhC-CCEEEE-cCCchHHHHHHHHHHhcCCCEEEE
Confidence 66654 2322 221 1 13455667788 998876 6777777999999884 444333
No 377
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=93.70 E-value=10 Score=39.58 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=116.8
Q ss_pred cCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCC---CCCCCCcccCCCC
Q 017448 59 NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQ---PNGEAPISCTSKG 135 (371)
Q Consensus 59 g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~---~~~~~~~~ps~~~ 135 (371)
|.||.-||..+.+.... ...+++...|+++++.. .|-++++-....|.--...+. ...+|.++-.++
T Consensus 290 GiGL~RtEfl~l~~~~~-------P~e~eq~~~y~~i~~~~--~~~pv~iRtlDig~DK~~~~~~~~~E~NP~LG~Rgi- 359 (565)
T TIGR01417 290 GIGLFRTEFLYMSRDQL-------PTEEEQFAAYKTVLEAM--ESDAVIVRTLDIGGDKELPYLNFPKEENPFLGYRAI- 359 (565)
T ss_pred EEEeeechHhhhCCCCC-------CCHHHHHHHHHHHHHHh--CCCceEEECCCCCCcccccccCCCCCCCccccchhh-
Confidence 88999999998875321 13578899999999876 455788888877632111110 000111111111
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHH
Q 017448 136 VTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFAL 215 (371)
Q Consensus 136 ~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~ 215 (371)
.++.+. .++...=.+|..+|...|..+|-+ |..+...+ ++.+.
T Consensus 360 --------------R~~l~~-~~lf~~QlrAI~ra~~~G~~~Im~-------------PmV~t~eE---------~~~~~ 402 (565)
T TIGR01417 360 --------------RLALER-EEILRTQLRAILRASAYGKLRIMF-------------PMVATVEE---------IRAVK 402 (565)
T ss_pred --------------hhcccC-HHHHHHHHHHHHHHHhcCCCeEEe-------------cCCCCHHH---------HHHHH
Confidence 122222 234444567888888889888886 55544333 44445
Q ss_pred HHHHHHHHHhC-------Cc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCccc-----------
Q 017448 216 EIVEAVVNEIG-------AE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFN----------- 276 (371)
Q Consensus 216 eiv~avR~~vg-------~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~----------- 276 (371)
++++.....+. .. ++++=+ + +. .+...+..+.+ |||++.|..-...+
T Consensus 403 ~~~~~~~~~l~~~~~~~~~~~~vg~mI-----------E-tp-aav~~~d~ia~-~vDf~sIGtnDLsqy~la~dR~n~~ 468 (565)
T TIGR01417 403 QELEEEKQELNDEGKAFDENIEVGVMI-----------E-IP-SAALIADHLAK-EVDFFSIGTNDLTQYTLAVDRGNDL 468 (565)
T ss_pred HHHHHHHHHHHHhccccccCcEEEEEE-----------c-CH-HHHHhHHHHHh-hCCEEEEChhHHHHHHHhhcccchh
Confidence 55554433221 11 233322 1 12 24566667766 89999884322211
Q ss_pred CCCC-CCCCch---hhHhHHH---hcCCCeEeeCCC--CHHHHHHHHHcCCccEEEechHhhh
Q 017448 277 AQDK-LDAPPY---SLLPMRK---AFDGTFIASGGY--NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 277 ~~~~-~~~~~~---~~~~ik~---~~~~pVi~~Ggi--t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
.... ...... .++.+.+ ..++||...|.+ ++..+..++..| ++.++++-..+.
T Consensus 469 l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G-~~~lsv~~~~i~ 530 (565)
T TIGR01417 469 ISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLG-LRELSMSASSIL 530 (565)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCC-CCEEEEChHhHH
Confidence 0100 111122 2232222 246788888876 788889999998 999999866554
No 378
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.70 E-value=1.8 Score=40.77 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
.+.+-+.+..+.|.|||-+.+.-| +|.+ =+.+.|.+++..+++ .++.-.++| .
T Consensus 21 ~~~~li~~l~~~Gv~Gl~~~GstG----E~~~-----------Lt~eEr~~l~~~~~~----~~~~vi~gv--g------ 73 (279)
T cd00953 21 KFKKHCENLISKGIDYVFVAGTTG----LGPS-----------LSFQEKLELLKAYSD----ITDKVIFQV--G------ 73 (279)
T ss_pred HHHHHHHHHHHcCCcEEEEcccCC----Cccc-----------CCHHHHHHHHHHHHH----HcCCEEEEe--C------
Confidence 344445566679999999877664 1111 134666665555544 443211221 2
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKAV 314 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~l 314 (371)
....++++++++..+++|+|.+-+..|.+.... .......+.+.|.+ ++||+. +|. ++++...++.
T Consensus 74 ----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~-~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~ 146 (279)
T cd00953 74 ----SLNLEESIELARAAKSFGIYAIASLPPYYFPGI-PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIK 146 (279)
T ss_pred ----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCC-CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHH
Confidence 234667899999999999999988777654311 11112234455656 778652 343 4788888888
Q ss_pred Hc
Q 017448 315 AE 316 (371)
Q Consensus 315 ~~ 316 (371)
++
T Consensus 147 ~~ 148 (279)
T cd00953 147 KA 148 (279)
T ss_pred hc
Confidence 64
No 379
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=93.68 E-value=2.8 Score=37.76 Aligned_cols=121 Identities=18% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc-cEEEEcCccCcCcCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER-VGIRLSPHANYMEAQD 245 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~-i~vrl~~~~~~~~~~~ 245 (371)
.+.+.+.+.|.|+||+-. ..+-++.+|+..+-.. -.++++..
T Consensus 68 ~~i~~~~~ld~VQlHG~e-----------------------------~~~~~~~l~~~~~~~v~kai~v~~~-------- 110 (208)
T COG0135 68 LEIAEELGLDAVQLHGDE-----------------------------DPEYIDQLKEELGVPVIKAISVSEE-------- 110 (208)
T ss_pred HHHHHhcCCCEEEECCCC-----------------------------CHHHHHHHHhhcCCceEEEEEeCCc--------
Confidence 345567899999999765 2566888888763221 23444431
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEe
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~ 324 (371)
.+ . ........-+|.+-+-...-+... .+...+|..+... ....|++..||+++++..++++.+...+|=+
T Consensus 111 ~~-----~-~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL~p~NV~~ai~~~~p~gvDv 182 (208)
T COG0135 111 GD-----L-ELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGLNPDNVAEAIALGPPYGVDV 182 (208)
T ss_pred cc-----h-hhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCCCHHHHHHHHHhcCCceEEe
Confidence 11 0 111222334676655432211111 0223344444433 4667899999999999999999985488888
Q ss_pred chHhhhCC
Q 017448 325 GRSFLANP 332 (371)
Q Consensus 325 gR~~ladP 332 (371)
..+.=.+|
T Consensus 183 SSGVE~~p 190 (208)
T COG0135 183 SSGVESSP 190 (208)
T ss_pred ccccccCC
Confidence 88877776
No 380
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=93.62 E-value=0.97 Score=39.38 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCC-chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGG-SLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGg-s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~ 242 (371)
++.|+.|.+||+-+|-.-=-- | ...|.+ || +....+.+ |+.|.+++. -||.-|.+..
T Consensus 24 ~eQAkIAE~AGA~AVMaLerv---------P-adiR~~--GGVaRMsDP~~----I~eI~~aVs-IPVMAK~RIG----- 81 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERV---------P-ADIRAA--GGVARMSDPKM----IKEIMDAVS-IPVMAKVRIG----- 81 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS----------H-HHHHHT--TS---S--HHH----HHHHHHH-S-SEEEEEEETT-----
T ss_pred HHHHHHHHHhCCeEEEEeccC---------C-HhHHhc--CCccccCCHHH----HHHHHHheE-eceeeccccc-----
Confidence 688999999999988632111 1 123333 44 33334444 555555553 2777776651
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLV 322 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V 322 (371)
- ..-++.|+..|||||+=|+-- .+....+ ..=|..+++|++++-. +.-+|.+-+.+| +.+|
T Consensus 82 ----H-----fvEAqiLealgVD~IDESEVL------TpAD~~~--HI~K~~F~vPFVcGar-nLGEALRRI~EG-AaMI 142 (208)
T PF01680_consen 82 ----H-----FVEAQILEALGVDYIDESEVL------TPADEEN--HIDKHNFKVPFVCGAR-NLGEALRRIAEG-AAMI 142 (208)
T ss_dssp ----------HHHHHHHHHTT-SEEEEETTS--------S-SS------GGG-SS-EEEEES-SHHHHHHHHHTT--SEE
T ss_pred ----e-----eehhhhHHHhCCceecccccc------ccccccc--cccchhCCCCeEecCC-CHHHHHhhHHhh-hhhh
Confidence 1 123578999999999965521 1111111 1124556777665333 556677777777 4444
No 381
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=93.61 E-value=1.2 Score=42.38 Aligned_cols=164 Identities=13% Similarity=0.001 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
+..++.++.+.+.|..+|-|.+- | .-+|+.|.+--|---++..-|++||+++++-.|...+...++.
T Consensus 61 d~l~~~~~~~~~~Gi~~v~lFgv----------~---~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT 127 (322)
T PRK13384 61 SALADEIERLYALGIRYVMPFGI----------S---HHKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYT 127 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC----------C---CCCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCC
Confidence 45567778888999999997543 1 2378888766666667888999999999654455455443221
Q ss_pred C----cC---C---CCChHHHHHHHHHHHhhcCccEEEEcC---CCcc-------cCCCCCCC--------CchhhHhHH
Q 017448 241 M----EA---Q---DSNPEALGLYMAKALNKYQILYLHILE---PRLF-------NAQDKLDA--------PPYSLLPMR 292 (371)
Q Consensus 241 ~----~~---~---~~~~~e~~~~la~~l~~~Gvd~l~v~~---~~~~-------~~~~~~~~--------~~~~~~~ik 292 (371)
. +. + .+.+.+...+.+-...++|+|.|.-|. +... ........ ...+...+|
T Consensus 128 ~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFR 207 (322)
T PRK13384 128 DHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFR 207 (322)
T ss_pred CCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHH
Confidence 1 11 1 122455555666677899999986443 1100 00000000 111233577
Q ss_pred HhcCCCeEeeCCC-C----H-------HHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 293 KAFDGTFIASGGY-N----R-------DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 293 ~~~~~pVi~~Ggi-t----~-------~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
++++.... |.- | + .+++.-+++| +|+||+ .|.+..=|+++++++.
T Consensus 208 dAa~Sap~--gDrksYQmdp~n~~eAlre~~~D~~EG-AD~lMV-KPal~YLDIi~~~k~~ 264 (322)
T PRK13384 208 AAVDCELS--GDRKSYQLDYANGRQALLEALLDEAEG-ADILMV-KPGTPYLDVLSRLRQE 264 (322)
T ss_pred HHhcCCCC--CCcccccCCCCCHHHHHHHHHhhHhhC-CCEEEE-cCCchHHHHHHHHHhc
Confidence 77653222 432 2 1 2455567788 998877 5777777999999884
No 382
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=93.61 E-value=1 Score=44.50 Aligned_cols=103 Identities=6% Similarity=-0.091 Sum_probs=60.7
Q ss_pred HHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc--CCCcccCCCC---CCCCchh----h
Q 017448 218 VEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL--EPRLFNAQDK---LDAPPYS----L 288 (371)
Q Consensus 218 v~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~---~~~~~~~----~ 288 (371)
+..+++.+++.+|.+-+.. ..+.+++.++++.+++.|+|+|++- -|........ .....+. +
T Consensus 104 i~~~k~~~~~~pvIaSi~~---------~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~ 174 (385)
T PLN02495 104 FKQLKEEYPDRILIASIME---------EYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVC 174 (385)
T ss_pred HHHHHhhCCCCcEEEEccC---------CCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHH
Confidence 5667776664466654421 2356789999999999999999763 3332100000 0122233 3
Q ss_pred HhHHHhcCCCeE--eeCCC-CHHHHHHHHHcCCccEEEechHhh
Q 017448 289 LPMRKAFDGTFI--ASGGY-NRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 289 ~~ik~~~~~pVi--~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+.+|+.+++||+ ..-.+ +.....+++.++.+|.|.+-=-+.
T Consensus 175 ~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 175 GWINAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 567888889966 34455 455554544444599998854443
No 383
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.57 E-value=0.19 Score=51.49 Aligned_cols=68 Identities=15% Similarity=0.037 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 251 LGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
++.+.++.|.++|+|+|.|.... . -.......++.+|+.++.+ .|..|++ |+++++.+++.| +|+|-+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~----g-~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG-Ad~I~v 311 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSE----G-YSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG-ADFVKV 311 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcc----c-ccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC-CCEEEE
Confidence 46678889999999999885210 0 0011245678899988754 5667777 999999999998 999855
No 384
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=93.54 E-value=3.8 Score=42.43 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=128.5
Q ss_pred CCCceeCCeec--CCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhch
Q 017448 16 LTPYKMGPFNL--SHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAW 92 (371)
Q Consensus 16 f~P~~ig~~~l--~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~ 92 (371)
...++||++.+ -|+|....|+.....| ++..++=-.+.+. |+.+|=.- .-+.+..+.+
T Consensus 11 Tr~V~vG~v~iGg~~PI~vQSMt~t~T~D---~~atv~Qi~~l~~aGceiVRvt----------------v~~~~~a~~l 71 (611)
T PRK02048 11 TSVVNIGATPLGGPNPIRIQSMTNTSTMD---TEACVAQAKRIIDAGGEYVRLT----------------TQGVREAENL 71 (611)
T ss_pred ceEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEEc----------------CCCHHHHHhH
Confidence 34678888776 6899999998754422 4445555666665 55444321 1235678899
Q ss_pred HHHHHHHHHcCC--eeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCC--CCCCCCCCh----HHHHHHHHHHH
Q 017448 93 KPIVDAVHEKGG--IFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGD--WSPPRPLRT----EEIPQIVNDFR 164 (371)
Q Consensus 93 ~~l~~~ih~~g~--~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~--~~~~~~mt~----~eI~~ii~~f~ 164 (371)
+.+.+.+.+.|. ++++-++-.-+.+.... -....++.+|+.-+-. .....+-|+ +|++.|-+.|.
T Consensus 72 ~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~-------~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~ 144 (611)
T PRK02048 72 MNINIGLRSQGYMVPLVADVHFNPKVADVAA-------QYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFV 144 (611)
T ss_pred HHHHHHHhhcCCCCCEEEecCCCcHHHHHHH-------HhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHH
Confidence 999999988885 56666543333221110 0112233443211100 001122333 34677888899
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCcCc
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANYME 242 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~~~ 242 (371)
.-++.|++.|. .|.|-.-||.|=.++++ +||...+--..-++|-++-+++. +- + .|++|-|..
T Consensus 145 ~~v~~ak~~~~-~iRIGvN~GSL~~~i~~--------~yg~tpe~mVeSAle~~~i~e~~-~f~diviS~KsS~~----- 209 (611)
T PRK02048 145 PFLNICKENHT-AIRIGVNHGSLSDRIMS--------RYGDTPEGMVESCMEFLRICVEE-HFTDVVISIKASNT----- 209 (611)
T ss_pred HHHHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCChHHHHHHHHHHHHHHHHC-CCCcEEEEEEeCCc-----
Confidence 99999999875 56777778989888886 57766666566666666666543 32 2 467777742
Q ss_pred CCCCChHHHHHHHHHHHhhcCccE-EEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILY-LHI 269 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~-l~v 269 (371)
...+.....++..+.+.|.+| ||+
T Consensus 210 ---~~~V~AyRlLa~~l~~~g~dyPLHL 234 (611)
T PRK02048 210 ---VVMVRTVRLLVAVMEAEGMHYPLHL 234 (611)
T ss_pred ---HHHHHHHHHHHHHHHhcCCCCceEE
Confidence 346677788899999888887 444
No 385
>PRK02227 hypothetical protein; Provisional
Probab=93.54 E-value=2.8 Score=38.46 Aligned_cols=128 Identities=11% Similarity=0.034 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
.+-|..|.++|.|-|++. |-...--|+. ...+|++|++.++.. +|+-.+.-..
T Consensus 10 ~eEA~~Al~~GaDiIDvK---------------~P~~GaLGA~-------~p~vir~Iv~~~~~~~pvSAtiGD~p---- 63 (238)
T PRK02227 10 LEEALEALAGGADIIDVK---------------NPKEGSLGAN-------FPWVIREIVAAVPGRKPVSATIGDVP---- 63 (238)
T ss_pred HHHHHHHHhcCCCEEEcc---------------CCCCCCCCCC-------CHHHHHHHHHHhCCCCCceeeccCCC----
Confidence 466788999999999974 3333344432 367788888888765 7766555211
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhH----hHHHhc-CCCeEeeCC--------CCHHH
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL----PMRKAF-DGTFIASGG--------YNRDD 309 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~----~ik~~~-~~pVi~~Gg--------it~~~ 309 (371)
..+ .....-+..+...|+||+-|.-.... ........++ .++... +..|+.++- +.+.+
T Consensus 64 ---~~p-~~~~~aa~~~a~~GvDyVKvGl~~~~----~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~ 135 (238)
T PRK02227 64 ---YKP-GTISLAALGAAATGADYVKVGLYGGK----TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLS 135 (238)
T ss_pred ---CCc-hHHHHHHHHHHhhCCCEEEEcCCCCC----cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHH
Confidence 112 22333444566789999987432111 0101112222 233332 234555542 23455
Q ss_pred HHHHHHcCCccEEEec
Q 017448 310 GNKAVAENYTDLVAYG 325 (371)
Q Consensus 310 a~~~l~~g~~D~V~~g 325 (371)
.-+...+-.+|.+|+-
T Consensus 136 l~~~a~~aGf~g~MlD 151 (238)
T PRK02227 136 LPAIAADAGFDGAMLD 151 (238)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 5555554459999984
No 386
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.49 E-value=0.43 Score=45.25 Aligned_cols=111 Identities=18% Similarity=0.066 Sum_probs=67.8
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
.|+|-+-+-+- .+|..++. .+.++++|+..+...|.|... +.++ +.+..++|+|.|-+.
T Consensus 169 ~nHR~gLsD~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEve------------tlee----a~eA~~aGaDiImLD 232 (294)
T PRK06978 169 ENQRLALYDGILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVE------------TLAQ----LETALAHGAQSVLLD 232 (294)
T ss_pred cCcCCCCCceEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcC------------CHHH----HHHHHHcCCCEEEEC
Confidence 67887776664 36666664 466777776554223444322 2343 334457899998764
Q ss_pred CCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCC
Q 017448 271 EPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANP 332 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP 332 (371)
..+ +.......+.++. ++.+-+.||+|.+...+..+.| +|+|++|.....=|
T Consensus 233 nms-------pe~l~~av~~~~~--~~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~ 284 (294)
T PRK06978 233 NFT-------LDMMREAVRVTAG--RAVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVR 284 (294)
T ss_pred CCC-------HHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 321 1111112222222 3458899999999999999988 99999997655444
No 387
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.49 E-value=1.1 Score=39.82 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
.+.+.++.+.++|.|.|++-...+- | . .+..+..++++.+|+.+ +.++.+-+-.
T Consensus 13 ~~~~~~~~~~~~G~~~i~l~~~d~~----~-----~-----------~~~~~~~~~~~~i~~~~-~~~~~v~l~~----- 66 (211)
T cd00429 13 NLGEELKRLEEAGADWIHIDVMDGH----F-----V-----------PNLTFGPPVVKALRKHT-DLPLDVHLMV----- 66 (211)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCC----C-----C-----------CccccCHHHHHHHHhhC-CCcEEEEeee-----
Confidence 4677888999999999998543321 0 0 11123367889999877 3343332221
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCCCHHHHHHHHHcCCcc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggit~~~a~~~l~~g~~D 320 (371)
.++. .+++.+.++|+|++.+|.... ......++.+++. ++. .+..+.-+.++..+.+..+ +|
T Consensus 67 ----~d~~----~~~~~~~~~g~dgv~vh~~~~-------~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-~d 129 (211)
T cd00429 67 ----ENPE----RYIEAFAKAGADIITFHAEAT-------DHLHRTIQLIKEL-GMKAGVALNPGTPVEVLEPYLDE-VD 129 (211)
T ss_pred ----CCHH----HHHHHHHHcCCCEEEECccch-------hhHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHhh-CC
Confidence 1122 245566689999998876421 1111233333332 333 3333333443333334444 78
Q ss_pred EEEec
Q 017448 321 LVAYG 325 (371)
Q Consensus 321 ~V~~g 325 (371)
+|.++
T Consensus 130 ~i~~~ 134 (211)
T cd00429 130 LVLVM 134 (211)
T ss_pred EEEEE
Confidence 88654
No 388
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=93.47 E-value=0.87 Score=42.64 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+..++|.++|.|.|.|..+- |+..+++ ++|-+.+.-...+.++++..|+. | +.|+++..+-+
T Consensus 75 ~di~~a~~~g~~~i~i~~~~--------S~~~~~~--~~~~~~~e~~~~~~~~i~~a~~~-G---~~v~~~~eda~---- 136 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGT--------SPFLREA--SHGKSITEIIESAVEVIEFVKSK-G---IEVRFSSEDSF---- 136 (262)
T ss_pred HHHHHHHHcCcCEEEEEEec--------CHHHHHH--HhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEeeC----
Confidence 34667788999999886543 2221222 23444555455556666666553 2 34555553211
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCc
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYT 319 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~ 319 (371)
..+.+...++++.+.+.|++-|.+.... +.. .+.......+.+|+.+++|+ ..... | ...+..+++.| +
T Consensus 137 -r~~~~~l~~~~~~~~~~g~~~i~l~Dt~-G~~--~P~~v~~~~~~~~~~~~~~i-~~H~Hn~~Gla~an~~~a~~aG-~ 210 (262)
T cd07948 137 -RSDLVDLLRVYRAVDKLGVNRVGIADTV-GIA--TPRQVYELVRTLRGVVSCDI-EFHGHNDTGCAIANAYAALEAG-A 210 (262)
T ss_pred -CCCHHHHHHHHHHHHHcCCCEEEECCcC-CCC--CHHHHHHHHHHHHHhcCCeE-EEEECCCCChHHHHHHHHHHhC-C
Confidence 2356778899999999999988875431 111 11223346677888887665 33333 2 56778899998 7
Q ss_pred cEEE
Q 017448 320 DLVA 323 (371)
Q Consensus 320 D~V~ 323 (371)
|.|-
T Consensus 211 ~~vd 214 (262)
T cd07948 211 THID 214 (262)
T ss_pred CEEE
Confidence 7663
No 389
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=93.46 E-value=6.8 Score=36.76 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCc--ccCCCCCCCCchhhHhHH
Q 017448 215 LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRL--FNAQDKLDAPPYSLLPMR 292 (371)
Q Consensus 215 ~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~--~~~~~~~~~~~~~~~~ik 292 (371)
.++++++ ...| .||.+|=.. ..+.++....++.+...|-.-+++..+.. ...+.....+...+..+|
T Consensus 124 ~~LL~~~-a~~g-kPV~lk~G~---------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk 192 (266)
T PRK13398 124 FELLKEV-GKTK-KPILLKRGM---------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIK 192 (266)
T ss_pred HHHHHHH-hcCC-CcEEEeCCC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 3445555 2333 288887654 22566777788888888876666655422 111201111334456778
Q ss_pred HhcCCCeEeeCC--CC-----HHHHHHHHHcCCccEEEec
Q 017448 293 KAFDGTFIASGG--YN-----RDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 293 ~~~~~pVi~~Gg--it-----~~~a~~~l~~g~~D~V~~g 325 (371)
+.++.||+..-. .. +..+..+++.| +|++++=
T Consensus 193 ~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~G-a~Gl~iE 231 (266)
T PRK13398 193 ELSHLPIIVDPSHATGRRELVIPMAKAAIAAG-ADGLMIE 231 (266)
T ss_pred hccCCCEEEeCCCcccchhhHHHHHHHHHHcC-CCEEEEe
Confidence 888899887322 23 56788899999 8977764
No 390
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.46 E-value=0.98 Score=42.86 Aligned_cols=85 Identities=11% Similarity=-0.040 Sum_probs=50.9
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCC--CCCCCC----chhhHhHHHhcCCCeEe-
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQ--DKLDAP----PYSLLPMRKAFDGTFIA- 301 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~--~~~~~~----~~~~~~ik~~~~~pVi~- 301 (371)
++.+-|.. ...+++...++.++++|+|+|+++-..-.... ...... ...++.+|+.+++||.+
T Consensus 91 p~ivsi~g----------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vK 160 (296)
T cd04740 91 PVIASIAG----------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVK 160 (296)
T ss_pred cEEEEEec----------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEE
Confidence 67776653 23577889999999999999988643211110 000111 13456788888889764
Q ss_pred -eCCC-CHHH-HHHHHHcCCccEEEe
Q 017448 302 -SGGY-NRDD-GNKAVAENYTDLVAY 324 (371)
Q Consensus 302 -~Ggi-t~~~-a~~~l~~g~~D~V~~ 324 (371)
...+ +..+ ++.+.+.| +|+|.+
T Consensus 161 l~~~~~~~~~~a~~~~~~G-~d~i~~ 185 (296)
T cd04740 161 LTPNVTDIVEIARAAEEAG-ADGLTL 185 (296)
T ss_pred eCCCchhHHHHHHHHHHcC-CCEEEE
Confidence 2233 2333 44555555 998765
No 391
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=93.37 E-value=0.93 Score=40.81 Aligned_cols=119 Identities=14% Similarity=0.058 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc--cEEEEcCccC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER--VGIRLSPHAN 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~--i~vrl~~~~~ 239 (371)
.|.+.++.+.++|+|.|++-...| .+-++..+..+.++.+++.++ .+ +.+..+
T Consensus 17 ~~~~~~~~~~~~G~~~i~l~~~d~--------------------~~~~~~~~~~~~~~~i~~~~~-~~~~v~l~v~---- 71 (220)
T PRK05581 17 RLGEEVKAVEAAGADWIHVDVMDG--------------------HFVPNLTIGPPVVEAIRKVTK-LPLDVHLMVE---- 71 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccC--------------------CcCCCcCcCHHHHHHHHhcCC-CcEEEEeeeC----
Confidence 467888899999999999854332 111122345788999998775 33 333333
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCC-CeEeeCCCCHHHHHHHHHcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDG-TFIASGGYNRDDGNKAVAENY 318 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pVi~~Ggit~~~a~~~l~~g~ 318 (371)
++.+ .+..+.+.|+|.+.+|.... ......++.+++. +. +.+..+-.|..+..+.+...
T Consensus 72 -------d~~~----~i~~~~~~g~d~v~vh~~~~-------~~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~- 131 (220)
T PRK05581 72 -------NPDR----YVPDFAKAGADIITFHVEAS-------EHIHRLLQLIKSA-GIKAGLVLNPATPLEPLEDVLDL- 131 (220)
T ss_pred -------CHHH----HHHHHHHcCCCEEEEeeccc-------hhHHHHHHHHHHc-CCEEEEEECCCCCHHHHHHHHhh-
Confidence 1222 33445588999988876521 1111223333333 33 23344333444444444444
Q ss_pred ccEEEec
Q 017448 319 TDLVAYG 325 (371)
Q Consensus 319 ~D~V~~g 325 (371)
+|+|.+.
T Consensus 132 ~d~i~~~ 138 (220)
T PRK05581 132 LDLVLLM 138 (220)
T ss_pred CCEEEEE
Confidence 7776653
No 392
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.35 E-value=0.8 Score=44.62 Aligned_cols=142 Identities=13% Similarity=-0.037 Sum_probs=81.5
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+-.++|.++|.|.|.|-...- +. +...+.+-+.+.-.+.+.++|+..|+. |. .+.+-++.. ...+..
T Consensus 125 ~die~A~~~g~~~v~i~~s~S--------d~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~-Gl-~v~~~is~~-fg~p~~ 191 (347)
T PLN02746 125 KGFEAAIAAGAKEVAVFASAS--------ES--FSKSNINCSIEESLVRYREVALAAKKH-SI-PVRGYVSCV-VGCPIE 191 (347)
T ss_pred HHHHHHHHcCcCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CC-eEEEEEEee-ecCCcc
Confidence 555677889999988776542 22 122223444555555555666666553 32 221112210 000111
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCc
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYT 319 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~ 319 (371)
...+.+...++++.+.+.|+|.|.+.... +.. .+.....+++.+++.++.+.+..... | ...+..+++.| +
T Consensus 192 ~r~~~~~l~~~~~~~~~~Gad~I~l~DT~-G~a--~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aG-a 267 (347)
T PLN02746 192 GPVPPSKVAYVAKELYDMGCYEISLGDTI-GVG--TPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMG-I 267 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc-CCc--CHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhC-C
Confidence 23467889999999999999999886532 111 11223346677888876533555544 3 46778899998 7
Q ss_pred cEEE
Q 017448 320 DLVA 323 (371)
Q Consensus 320 D~V~ 323 (371)
|.|-
T Consensus 268 ~~vd 271 (347)
T PLN02746 268 STVD 271 (347)
T ss_pred CEEE
Confidence 7764
No 393
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.34 E-value=0.26 Score=50.58 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+-++.|.++|+|.|.+.... . -....++.+++||+.++...+..|++ |.++|..+++.| +|+|.+|
T Consensus 249 ~~~r~~~l~~ag~d~i~iD~~~----g-~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG-aD~i~vg 317 (505)
T PLN02274 249 DKERLEHLVKAGVDVVVLDSSQ----G-DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG-VDGLRVG 317 (505)
T ss_pred HHHHHHHHHHcCCCEEEEeCCC----C-CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 4578889999999999875431 0 01122467899999886444445666 999999999998 9999553
No 394
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=93.31 E-value=1.8 Score=40.20 Aligned_cols=134 Identities=12% Similarity=0.021 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
++.+.++.+.+.|+|.||+-. |-+.. +. ....+.+++..+|+.++.-||.+-++...+.
T Consensus 29 e~~~~~~~~~~~~aD~vElRl------------------D~l~~-~~-~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eG- 87 (253)
T PRK02412 29 EVLAEALAISKYDADIIEWRA------------------DFLEK-IS-DVESVLAAAPAIREKFAGKPLLFTFRTAKEG- 87 (253)
T ss_pred HHHHHHHHHhhcCCCEEEEEe------------------chhhc-cC-CHHHHHHHHHHHHHhcCCCcEEEEECChhhC-
Confidence 344555666667999999654 33221 11 1245678888999987644544444432211
Q ss_pred cCCCCChHHHHHHHHHHHhhcC-ccEEEEcCCCcccCCCCCCCCchhhHhHHH---hcCCCeEeeC-CC--CH--HH---
Q 017448 242 EAQDSNPEALGLYMAKALNKYQ-ILYLHILEPRLFNAQDKLDAPPYSLLPMRK---AFDGTFIASG-GY--NR--DD--- 309 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~G-vd~l~v~~~~~~~~~~~~~~~~~~~~~ik~---~~~~pVi~~G-gi--t~--~~--- 309 (371)
.......++..++.+.+.+.| +|||+|.... .....+.+.+ .-+..||++- .+ |+ ++
T Consensus 88 -G~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~----------~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~ 156 (253)
T PRK02412 88 -GEIALSDEEYLALIKAVIKSGLPDYIDVELFS----------GKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVE 156 (253)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEEeccC----------ChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHH
Confidence 111234566677888888888 9999984321 1122222222 2345666554 34 44 33
Q ss_pred -HHHHHHcCCccEEEechHh
Q 017448 310 -GNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 310 -a~~~l~~g~~D~V~~gR~~ 328 (371)
.+++.+.| ||+|=++...
T Consensus 157 ~~~~~~~~g-aDivKia~~a 175 (253)
T PRK02412 157 RLRKMESLG-ADIVKIAVMP 175 (253)
T ss_pred HHHHHHHhC-CCEEEEEecC
Confidence 33444455 8887776543
No 395
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.26 E-value=1.1 Score=41.01 Aligned_cols=117 Identities=15% Similarity=0.001 Sum_probs=75.8
Q ss_pred CChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 84 WTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 84 ~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
..++.++..++.++.+++.|..+.+.+.+.++. + .+.+
T Consensus 102 ~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~-----------------------------------~-------~~~~ 139 (237)
T PF00682_consen 102 SREEALERIEEAVKYAKELGYEVAFGCEDASRT-----------------------------------D-------PEEL 139 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGS-----------------------------------S-------HHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCceEeCccccccc-----------------------------------c-------HHHH
Confidence 345778899999999999999998877654321 1 1345
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++++.++|.|.|-|-=.- |... +..+.++++++|+..++-+|++-.+. ++
T Consensus 140 ~~~~~~~~~~g~~~i~l~Dt~-------------------G~~~---P~~v~~lv~~~~~~~~~~~l~~H~Hn--d~--- 192 (237)
T PF00682_consen 140 LELAEALAEAGADIIYLADTV-------------------GIMT---PEDVAELVRALREALPDIPLGFHAHN--DL--- 192 (237)
T ss_dssp HHHHHHHHHHT-SEEEEEETT-------------------S-S----HHHHHHHHHHHHHHSTTSEEEEEEBB--TT---
T ss_pred HHHHHHHHHcCCeEEEeeCcc-------------------CCcC---HHHHHHHHHHHHHhccCCeEEEEecC--Cc---
Confidence 677888888899999874333 3221 34468999999999986456664443 11
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
+ . +..-+-...++|+++|+.+-..++
T Consensus 193 --G--l--a~An~laA~~aGa~~id~t~~GlG 218 (237)
T PF00682_consen 193 --G--L--AVANALAALEAGADRIDGTLGGLG 218 (237)
T ss_dssp --S-----HHHHHHHHHHTT-SEEEEBGGGGS
T ss_pred --c--c--hhHHHHHHHHcCCCEEEccCccCC
Confidence 1 1 223333446689999998765443
No 396
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=93.20 E-value=1.5 Score=42.53 Aligned_cols=126 Identities=13% Similarity=0.139 Sum_probs=74.2
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCC----CCCCCC-c---hhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDR----TDQYGG-S---LENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R----~D~yGg-s---~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
.|+++|+|+|.++- |-...+.++..+.+ .+.|.| + +-+++.|..|-.+.+.+.+...-|.+=-++++
T Consensus 24 ~A~~aGadaVKfQt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpfd-- 98 (329)
T TIGR03569 24 AAAEAGADAVKFQT---FKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFLSTPFD-- 98 (329)
T ss_pred HHHHhCCCEEEeee---CCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeCC--
Confidence 34679999999985 78888888765431 224433 3 34456666677777777663221111112321
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHH---HHHHHHc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDD---GNKAVAE 316 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~---a~~~l~~ 316 (371)
. .-++.|++.|++++-|..+. -.+..+++.+.+ .+.|||..-|. |.++ |.+.+.+
T Consensus 99 --------~----~svd~l~~~~v~~~KIaS~~--------~~n~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 99 --------L----ESADFLEDLGVPRFKIPSGE--------ITNAPLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRD 157 (329)
T ss_pred --------H----HHHHHHHhcCCCEEEECccc--------ccCHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 1 23345678899999886542 235566776665 47797766666 7554 4455555
Q ss_pred CCcc
Q 017448 317 NYTD 320 (371)
Q Consensus 317 g~~D 320 (371)
.+++
T Consensus 158 ~G~~ 161 (329)
T TIGR03569 158 AGTP 161 (329)
T ss_pred cCCC
Confidence 4454
No 397
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=93.19 E-value=0.4 Score=41.80 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=65.5
Q ss_pred cCCCCCCCCc--hhhhhHH---HHHHHHHHHHHhCCcc-cEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 197 NDRTDQYGGS--LENRCRF---ALEIVEAVVNEIGAER-VGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 197 N~R~D~yGgs--~enR~r~---~~eiv~avR~~vg~~~-i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
|+|.+.+..- ..|-.++ +.+.++++|+..+..+ |.|.... .+++ .+..++|+|.|-+-
T Consensus 44 ~hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~------------~ee~----~ea~~~g~d~I~lD 107 (169)
T PF01729_consen 44 NHRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVEN------------LEEA----EEALEAGADIIMLD 107 (169)
T ss_dssp HHHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESS------------HHHH----HHHHHTT-SEEEEE
T ss_pred eEECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCC------------HHHH----HHHHHhCCCEEEec
Confidence 5555555443 3444444 5788888999887664 6664432 3332 33445899998874
Q ss_pred CCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHh
Q 017448 271 EPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
..+ +.......+.++..- ++.+.+.||+|.+...++.+.| +|++++|...
T Consensus 108 ~~~-------~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~ 158 (169)
T PF01729_consen 108 NMS-------PEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTG-VDVISVGSLT 158 (169)
T ss_dssp S-C-------HHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT--SEEEECHHH
T ss_pred CcC-------HHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcC-CCEEEcChhh
Confidence 431 111112233343333 3558899999999999999998 9999999654
No 398
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=93.19 E-value=2.3 Score=41.25 Aligned_cols=84 Identities=15% Similarity=0.017 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCC----cccC-----CC---CCC---CCchhhHhHHHhc---CCCeEeeCCC--CH-
Q 017448 249 EALGLYMAKALNKYQILYLHILEPR----LFNA-----QD---KLD---APPYSLLPMRKAF---DGTFIASGGY--NR- 307 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~----~~~~-----~~---~~~---~~~~~~~~ik~~~---~~pVi~~Ggi--t~- 307 (371)
.+.....++...+.|.|+|-+--+. +..- .. ... ......+.+.+.. ++||+..||= +.
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~ 295 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGED 295 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHH
Confidence 4555666777788899999874432 1100 00 011 1112233444444 6787777774 43
Q ss_pred ---HHHHHH---HHcCCccEEEechHhhhCCc
Q 017448 308 ---DDGNKA---VAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 308 ---~~a~~~---l~~g~~D~V~~gR~~ladP~ 333 (371)
+....+ ++.| +..|.+||=.+..|+
T Consensus 296 e~L~~v~~a~~~i~aG-a~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 296 DLLDAVRTAVINKRAG-GMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHHHHHHHHhhhcC-CcchhhchhhhcCCc
Confidence 345667 7766 999999999999985
No 399
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.17 E-value=0.45 Score=42.89 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
+.+++..+++.+.+.|+..++++..+ + .....++.+++....+ +++.|.+ +.++++.+++.| +||+..+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~-------~-~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG-A~fivsp 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNS-------P-DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG-GRLIVTP 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------c-cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC-CCEEECC
Confidence 46778999999999999999987532 1 1234677788888765 7788887 999999999999 9999985
Q ss_pred hHhhhCCcHHHHHHh
Q 017448 326 RSFLANPDLPKRFEL 340 (371)
Q Consensus 326 R~~ladP~l~~k~~~ 340 (371)
- .|+++.+..+.
T Consensus 91 ~---~~~~v~~~~~~ 102 (206)
T PRK09140 91 N---TDPEVIRRAVA 102 (206)
T ss_pred C---CCHHHHHHHHH
Confidence 3 56677666553
No 400
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.16 E-value=0.53 Score=44.68 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=64.6
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
.|+|-+-+..- ..|...+. .+.|+++|+..+..+|.|-.. +.+++ .+..++|+|.|-+.
T Consensus 172 ~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~------------sleea----~ea~~~gaDiI~LD 235 (296)
T PRK09016 172 ANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVE------------NLDEL----DQALKAGADIIMLD 235 (296)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeC------------CHHHH----HHHHHcCCCEEEeC
Confidence 56666655543 34555554 466667776665434544332 23433 33446899988763
Q ss_pred CCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 271 EPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
..+ +.......+.++. ++.+.+.||+|.+...+..+.| +|+|++|...-
T Consensus 236 n~s-------~e~~~~av~~~~~--~~~ieaSGGI~~~ni~~yA~tG-VD~Is~galth 284 (296)
T PRK09016 236 NFT-------TEQMREAVKRTNG--RALLEVSGNVTLETLREFAETG-VDFISVGALTK 284 (296)
T ss_pred CCC-------hHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 321 1111112222222 4568899999999999999988 99999997543
No 401
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.11 E-value=0.33 Score=41.98 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=46.7
Q ss_pred HHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 255 MAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 255 la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
-...+++.+.|++++-.| -.+..++++.+.+++|||++|-+ |.|++.++|..| +-.|+-
T Consensus 113 ~~~~i~~~~pD~iEvLPG----------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aG-A~avST 172 (181)
T COG1954 113 GIKQIEKSEPDFIEVLPG----------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAG-AVAVST 172 (181)
T ss_pred HHHHHHHcCCCEEEEcCc----------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhC-cEEEee
Confidence 344566778999998432 34577899999999999998888 999999999999 555553
No 402
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.11 E-value=0.3 Score=46.93 Aligned_cols=67 Identities=10% Similarity=0.118 Sum_probs=48.8
Q ss_pred HHHHHHHhhcC--ccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 253 LYMAKALNKYQ--ILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 253 ~~la~~l~~~G--vd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
.+.+..|.++| +|+|.+....-. .....+.++.+|+.++.|++..|++ |.+.|..+++.| +|.|-++
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~-----s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~ 165 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGH-----SNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG 165 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCc-----hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 45666788888 698876332100 0112456788999999998888988 999999999998 9997655
No 403
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.11 E-value=1.8 Score=39.42 Aligned_cols=44 Identities=11% Similarity=0.234 Sum_probs=36.7
Q ss_pred hhhHhHHHhcC-CCeEeeCCCCH--HHHHHHHHcCCccEEEechHhhh
Q 017448 286 YSLLPMRKAFD-GTFIASGGYNR--DDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 286 ~~~~~ik~~~~-~pVi~~Ggit~--~~a~~~l~~g~~D~V~~gR~~la 330 (371)
.+++.++.-++ ++++.+||++. +++.+.++.| +..|++|..++.
T Consensus 147 ~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~ 193 (222)
T PRK07114 147 GFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence 45666666665 67999999976 8999999988 999999999874
No 404
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.97 E-value=0.069 Score=46.69 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEechHh
Q 017448 254 YMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYGRSF 328 (371)
Q Consensus 254 ~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ 328 (371)
.-.+.+++.+.|++++-.+ .....++++++.+++|+|++|-+ |.++.+++|+.| ++.|+-+..-
T Consensus 108 ~~~~~i~~~~PD~vEilPg----------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~aVSTS~~~ 172 (175)
T PF04309_consen 108 TGIKQIEQSKPDAVEILPG----------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-ADAVSTSNKE 172 (175)
T ss_dssp HHHHHHHHHT-SEEEEESC----------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CEEEEE--HH
T ss_pred HHHHHHhhcCCCEEEEchH----------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CEEEEcCChH
Confidence 3455677788999998432 23456778888999999998888 899999999999 9999876553
No 405
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.97 E-value=0.6 Score=44.17 Aligned_cols=111 Identities=12% Similarity=0.013 Sum_probs=67.1
Q ss_pred ccCCCCCCCCc--hhhhhHHH------HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA------LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYL 267 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~------~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l 267 (371)
.|+|-+-+-+- .+|...+. .+.|+++|+..+...|.|-.. +.++ +++..++|+|.|
T Consensus 150 ~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~------------tleq----a~ea~~agaDiI 213 (284)
T PRK06096 150 LIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEAD------------TPKE----AIAALRAQPDVL 213 (284)
T ss_pred cCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECC------------CHHH----HHHHHHcCCCEE
Confidence 56777665554 35555553 467778887776434544332 3343 344557899998
Q ss_pred EEcCCCcccCCCCCCCCchhhHhHHHh-cCCCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 268 HILEPRLFNAQDKLDAPPYSLLPMRKA-FDGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 268 ~v~~~~~~~~~~~~~~~~~~~~~ik~~-~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
-+...+ +.......+.+++. -++.+-+.||+|++.+.++.+.| +|++++|-..-+
T Consensus 214 ~LDn~~-------~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~gal~~a 269 (284)
T PRK06096 214 QLDKFS-------PQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCG-IRLFITSAPYYA 269 (284)
T ss_pred EECCCC-------HHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcC-CCEEEECccccC
Confidence 863221 11111122222211 23458899999999999999998 999999865444
No 406
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.96 E-value=0.34 Score=46.83 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
..+.++.+.++|++.|++....- ......+.++.+|+..+ +||++ |.+ |.+.+..+++.| +|+|.+
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G-----~~~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG-aD~I~v 162 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG-----HSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG-ADGVKV 162 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC-----CcHHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC-CCEEEE
Confidence 45677788889999998754210 11122456778888775 67766 666 999999999998 999986
No 407
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=92.86 E-value=1.4 Score=43.03 Aligned_cols=76 Identities=13% Similarity=-0.030 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCC--c-----------ccCC-----------------------CCCCCCchhhHhHH
Q 017448 249 EALGLYMAKALNKYQILYLHILEPR--L-----------FNAQ-----------------------DKLDAPPYSLLPMR 292 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~--~-----------~~~~-----------------------~~~~~~~~~~~~ik 292 (371)
.+....+.++.+++|++.|-++--. . ..+. ..+...+..+++++
T Consensus 130 ~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 209 (344)
T cd02922 130 RTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLR 209 (344)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHH
Confidence 3456788899999999988665311 0 0000 00113345678899
Q ss_pred HhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 293 KAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 293 ~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
+.+++||++-|-.+.++++.+.+.| +|.|.+.
T Consensus 210 ~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~vs 241 (344)
T cd02922 210 KHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVLS 241 (344)
T ss_pred HhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEEE
Confidence 9999999888666999999999988 9998753
No 408
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=92.83 E-value=0.66 Score=42.32 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
+.|...|...|.|.|.+|.-.|- .-||+ |-+|-...-+.+. |..++.+ .+...+...- -..
T Consensus 98 vaA~~IA~a~gA~FIRVN~~tg~-----------~~tdq--Giieg~A~e~~r~----r~~L~~~v~vlADv~VKH-a~~ 159 (263)
T COG0434 98 VAALAIAYAVGADFIRVNVLTGA-----------YATDQ--GIIEGNAAELARY----RARLGSRVKVLADVHVKH-AVH 159 (263)
T ss_pred HHHHHHHHhcCCCEEEEEeeece-----------Eeccc--ceecchHHHHHHH----HHhccCCcEEEeecchhc-ccc
Confidence 56677888899999998876542 11232 4455555433333 3344432 2322222210 000
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLV 322 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V 322 (371)
.. ..+.++ ..-..++..+.|.+-++...- +..++...++.+++.++.||+++.|.+++.+.+.+.- +|.+
T Consensus 160 l~-~~~~~~--~v~dtver~~aDaVI~tG~~T-----G~~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~--adG~ 229 (263)
T COG0434 160 LG-NRSLEE--AVKDTVERGLADAVIVTGSRT-----GSPPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKI--ADGV 229 (263)
T ss_pred cC-CcCHHH--HHHHHHHccCCCEEEEecccC-----CCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHH--cCce
Confidence 01 113332 344457778899998876543 2345677889999999999999999999999999985 8999
Q ss_pred EechHh
Q 017448 323 AYGRSF 328 (371)
Q Consensus 323 ~~gR~~ 328 (371)
.+|..+
T Consensus 230 IvgT~l 235 (263)
T COG0434 230 IVGTSL 235 (263)
T ss_pred EEEEEE
Confidence 998765
No 409
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=92.81 E-value=0.63 Score=42.55 Aligned_cols=138 Identities=14% Similarity=0.033 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
-.+.+.+.++|.|.|.+.....-+ ++...++-+.+.-.+.+.++++.+|+. | +.+.++..+.
T Consensus 70 ~~~~~~~~~~g~~~i~i~~~~s~~----------~~~~~~~~~~~~~~~~~~~~v~~ak~~-g---~~v~~~~~~~---- 131 (237)
T PF00682_consen 70 ERAVEAAKEAGIDIIRIFISVSDL----------HIRKNLNKSREEALERIEEAVKYAKEL-G---YEVAFGCEDA---- 131 (237)
T ss_dssp HHHHHHHHHTTSSEEEEEEETSHH----------HHHHHTCSHHHHHHHHHHHHHHHHHHT-T---SEEEEEETTT----
T ss_pred HHHHHhhHhccCCEEEecCcccHH----------HHHHhhcCCHHHHHHHHHHHHHHHHhc-C---CceEeCcccc----
Confidence 344566778999999987655321 222334555666666666777777653 2 2345554321
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCC
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENY 318 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~ 318 (371)
...+.++..++++.+.+.|+|.|.+.... +.. .+.....+++.+++.++...+..... + ...+..+++.|
T Consensus 132 -~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~-G~~--~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aG- 206 (237)
T PF00682_consen 132 -SRTDPEELLELAEALAEAGADIIYLADTV-GIM--TPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAG- 206 (237)
T ss_dssp -GGSSHHHHHHHHHHHHHHT-SEEEEEETT-S-S---HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred -ccccHHHHHHHHHHHHHcCCeEEEeeCcc-CCc--CHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcC-
Confidence 12356788999999999999999886531 111 11122356788999988333333333 2 56788999998
Q ss_pred ccEEEe
Q 017448 319 TDLVAY 324 (371)
Q Consensus 319 ~D~V~~ 324 (371)
||.|-.
T Consensus 207 a~~id~ 212 (237)
T PF00682_consen 207 ADRIDG 212 (237)
T ss_dssp -SEEEE
T ss_pred CCEEEc
Confidence 998853
No 410
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=92.80 E-value=0.4 Score=49.06 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
..+.++.|.++|+|.|++....-. ....+..+++||+.++ ++|++ |++ |.+++..+++.| +|+|-+
T Consensus 242 ~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG-ad~I~v 309 (495)
T PTZ00314 242 DIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG-ADGLRI 309 (495)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC-CCEEEE
Confidence 367888999999999998543100 1112457888999874 56666 666 999999999999 999954
No 411
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=92.79 E-value=0.95 Score=44.49 Aligned_cols=133 Identities=11% Similarity=0.001 Sum_probs=80.4
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
.+++.++|.|.|.|...- |+ .++..+++-+.+.-.+.+.+.|+.+|+. | +.|.++..+ ...
T Consensus 78 i~~a~~~g~~~i~i~~~~--------Sd--~~~~~~~~~s~~e~l~~~~~~i~~ak~~-g---~~v~~~~ed-----~~r 138 (365)
T TIGR02660 78 IEAAARCGVDAVHISIPV--------SD--LQIEAKLRKDRAWVLERLARLVSFARDR-G---LFVSVGGED-----ASR 138 (365)
T ss_pred HHHHHcCCcCEEEEEEcc--------CH--HHHHHHhCcCHHHHHHHHHHHHHHHHhC-C---CEEEEeecC-----CCC
Confidence 356778899998876643 11 1233344555555455556666655553 3 345666532 123
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCccE
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYTDL 321 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~D~ 321 (371)
.+.+...++++.+.++|++.|.+.... +.. .+.....+++.+++.+++|+ ..... + ...+..+++.| +|.
T Consensus 139 ~~~~~l~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~v~l-~~H~HNd~GlA~ANalaA~~aG-a~~ 213 (365)
T TIGR02660 139 ADPDFLVELAEVAAEAGADRFRFADTV-GIL--DPFSTYELVRALRQAVDLPL-EMHAHNDLGMATANTLAAVRAG-ATH 213 (365)
T ss_pred CCHHHHHHHHHHHHHcCcCEEEEcccC-CCC--CHHHHHHHHHHHHHhcCCeE-EEEecCCCChHHHHHHHHHHhC-CCE
Confidence 357788999999999999999885531 111 11223346677888877664 33333 3 46677888888 666
Q ss_pred EE
Q 017448 322 VA 323 (371)
Q Consensus 322 V~ 323 (371)
|-
T Consensus 214 vd 215 (365)
T TIGR02660 214 VN 215 (365)
T ss_pred EE
Confidence 53
No 412
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=92.78 E-value=1.5 Score=43.32 Aligned_cols=41 Identities=24% Similarity=0.187 Sum_probs=35.8
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
.|+.++++++.+++||+.-|-++.+++..+++.| +|.|.++
T Consensus 241 tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G-~d~I~vs 281 (383)
T cd03332 241 TWEDLAFLREWTDLPIVLKGILHPDDARRAVEAG-VDGVVVS 281 (383)
T ss_pred CHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC-CCEEEEc
Confidence 4566788999999999998778999999999998 9999863
No 413
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=92.75 E-value=4.4 Score=42.72 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=125.6
Q ss_pred CCceeCCeec--CCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhchH
Q 017448 17 TPYKMGPFNL--SHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWK 93 (371)
Q Consensus 17 ~P~~ig~~~l--~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (371)
..++||++.+ -|+|....|+.....| ++..++=-.+.+. |+.+|=.- .-+.+..+.++
T Consensus 81 r~V~VG~v~iGG~~PI~VQSMt~t~T~D---~eatv~Qi~~l~~aGceiVRvt----------------v~~~~~A~al~ 141 (733)
T PLN02925 81 RTVMVGNVALGSEHPIRIQTMTTTDTKD---VEATVDQVMRIADKGADIVRIT----------------VQGKKEADACF 141 (733)
T ss_pred eEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEEc----------------CCCHHHHHhHH
Confidence 3477888776 6899999998754322 4445555566665 55544321 12456778899
Q ss_pred HHHHHHHHcCC--eeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCC--CCCCCCCh----HHHHHHHHHHHH
Q 017448 94 PIVDAVHEKGG--IFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDW--SPPRPLRT----EEIPQIVNDFRL 165 (371)
Q Consensus 94 ~l~~~ih~~g~--~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~--~~~~~mt~----~eI~~ii~~f~~ 165 (371)
.+.+...+.|. ++++-++...+.+.... -....++.+|+.-|... ....+-|+ +|++.|-+.|..
T Consensus 142 ~I~~~L~~~g~~iPLVADIHF~~~~Al~a~-------~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~ 214 (733)
T PLN02925 142 EIKNTLVQKGYNIPLVADIHFAPSVALRVA-------ECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTP 214 (733)
T ss_pred HHHHHHhhcCCCCCEEEecCCCHHHHHHHH-------HhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHH
Confidence 99888888774 56666543333221110 01222344432111000 01112233 457788888999
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCcCcC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANYMEA 243 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~~~~ 243 (371)
-.+.|++.|. .|.|-.-||.|=.++++ +||...+--..-++|-++-+++. +- + .|++|-|--
T Consensus 215 ~v~~ak~~~~-~iRIGvN~GSLs~ri~~--------~yGdtp~gmVeSAle~~~i~e~~-~f~diviS~KsSn~------ 278 (733)
T PLN02925 215 LVEKCKKYGR-AMRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKL-DYHNFVFSMKASNP------ 278 (733)
T ss_pred HHHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCChHHHHHHHHHHHHHHHHC-CCCcEEEEEEcCCh------
Confidence 9999999875 56777778999888886 57766665555566666655443 32 2 466776631
Q ss_pred CCCChHHHHHHHHHHHhhcCccE-EEE
Q 017448 244 QDSNPEALGLYMAKALNKYQILY-LHI 269 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~-l~v 269 (371)
...+.....++.+|.+.|++| ||+
T Consensus 279 --~~~V~AyR~La~~L~~~g~~yPLhL 303 (733)
T PLN02925 279 --VVMVQAYRLLVAEMYVLGWDYPLHL 303 (733)
T ss_pred --HHHHHHHHHHHHHHHhcCCCCceEE
Confidence 235666778888888888887 444
No 414
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.73 E-value=0.39 Score=47.63 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
+.+.++.|.++|+|+|.+.... . ........++.+|+.++ .+|++ |++ |.+++..+++.| +|+|.+|
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~-g----~~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~aG-aD~I~vG 222 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH-G----HSTRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLISVG-ADCLKVG 222 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-C----CChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHHcC-CCEEEEC
Confidence 5678888999999999874322 0 11123456788998884 55555 555 999999999998 9998766
No 415
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.72 E-value=1.6 Score=45.62 Aligned_cols=133 Identities=22% Similarity=0.139 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-c--cEEEEc
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-R--VGIRLS 235 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~--i~vrl~ 235 (371)
+++.|++ .|.++|.|.|.|-.+. |. .+-+...++.+|+. |.. . |++-.+
T Consensus 98 vv~~~v~---~a~~~Gid~~rifd~l------------nd------------~~~~~~ai~~ak~~-G~~~~~~i~yt~~ 149 (593)
T PRK14040 98 VVERFVE---RAVKNGMDVFRVFDAM------------ND------------PRNLETALKAVRKV-GAHAQGTLSYTTS 149 (593)
T ss_pred HHHHHHH---HHHhcCCCEEEEeeeC------------Cc------------HHHHHHHHHHHHHc-CCeEEEEEEEeeC
Confidence 4445554 4668999999986433 11 23456677777764 433 2 333333
Q ss_pred CccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHH
Q 017448 236 PHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDG 310 (371)
Q Consensus 236 ~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a 310 (371)
+ ..+.+...++++.+++.|+|.|.+.... +.. .+.......+.+|+.+++||-. ... | ....
T Consensus 150 p---------~~~~~~~~~~a~~l~~~Gad~i~i~Dt~-G~l--~P~~~~~lv~~lk~~~~~pi~~-H~Hnt~GlA~An~ 216 (593)
T PRK14040 150 P---------VHTLQTWVDLAKQLEDMGVDSLCIKDMA-GLL--KPYAAYELVSRIKKRVDVPLHL-HCHATTGLSTATL 216 (593)
T ss_pred C---------ccCHHHHHHHHHHHHHcCCCEEEECCCC-CCc--CHHHHHHHHHHHHHhcCCeEEE-EECCCCchHHHHH
Confidence 3 2357788999999999999999986532 111 1122345677888888877543 332 3 4667
Q ss_pred HHHHHcCCccEEE-----echHhhhCCcH
Q 017448 311 NKAVAENYTDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 311 ~~~l~~g~~D~V~-----~gR~~ladP~l 334 (371)
..+++.| ||.|- ||++ ..||.+
T Consensus 217 laAieAG-a~~vD~ai~glG~~-~Gn~~l 243 (593)
T PRK14040 217 LKAIEAG-IDGVDTAISSMSMT-YGHSAT 243 (593)
T ss_pred HHHHHcC-CCEEEecccccccc-ccchhH
Confidence 8899998 88774 5664 366754
No 416
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.67 E-value=1.4 Score=46.13 Aligned_cols=135 Identities=14% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-c--cEEEE
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-R--VGIRL 234 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~--i~vrl 234 (371)
.+|+.|+ ++|.+.|.|-+.|--++ |..+-+..-++++|+. |.. . |++-.
T Consensus 96 ~vv~~~v---~~a~~~Gidv~Rifd~l------------------------nd~~n~~~~i~~~k~~-G~~~~~~i~yt~ 147 (596)
T PRK14042 96 DVVRAFV---KLAVNNGVDVFRVFDAL------------------------NDARNLKVAIDAIKSH-KKHAQGAICYTT 147 (596)
T ss_pred HHHHHHH---HHHHHcCCCEEEEcccC------------------------cchHHHHHHHHHHHHc-CCEEEEEEEecC
Confidence 3455554 45678999999986554 3355567778888775 543 2 34444
Q ss_pred cCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCC----HHHH
Q 017448 235 SPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYN----RDDG 310 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit----~~~a 310 (371)
++ -.+.+...++++.+++.|+|.|.+.... +.. .+.....+.+.+|+.+++||-.=..-| ....
T Consensus 148 sp---------~~t~e~~~~~ak~l~~~Gad~I~IkDta-G~l--~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~ 215 (596)
T PRK14042 148 SP---------VHTLDNFLELGKKLAEMGCDSIAIKDMA-GLL--TPTVTVELYAGLKQATGLPVHLHSHSTSGLASICH 215 (596)
T ss_pred CC---------CCCHHHHHHHHHHHHHcCCCEEEeCCcc-cCC--CHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHH
Confidence 43 2367889999999999999999886532 111 112234567788988887754322213 4667
Q ss_pred HHHHHcCCccEEE-----echHhhhCCcH
Q 017448 311 NKAVAENYTDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 311 ~~~l~~g~~D~V~-----~gR~~ladP~l 334 (371)
..+++.| ||.|= ||... .||.+
T Consensus 216 laAieaG-ad~iD~ai~glGg~t-Gn~~t 242 (596)
T PRK14042 216 YEAVLAG-CNHIDTAISSFSGGA-SHPPT 242 (596)
T ss_pred HHHHHhC-CCEEEeccccccCCC-CcHhH
Confidence 7889998 88774 45442 56643
No 417
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.63 E-value=1.2 Score=44.88 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
+++.|++ +|.++|.|.|.|-.+... . .| +.+.++.+|+. |. .+.+-++...
T Consensus 97 vv~~~v~---~A~~~Gvd~irif~~lnd--------~------------~n----~~~~v~~ak~~-G~-~v~~~i~~t~ 147 (448)
T PRK12331 97 VVESFVQ---KSVENGIDIIRIFDALND--------V------------RN----LETAVKATKKA-GG-HAQVAISYTT 147 (448)
T ss_pred hHHHHHH---HHHHCCCCEEEEEEecCc--------H------------HH----HHHHHHHHHHc-CC-eEEEEEEeec
Confidence 3444544 455789999988665411 1 12 55567776664 43 2222233211
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee----CCCCHHHHHHHH
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS----GGYNRDDGNKAV 314 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~----Ggit~~~a~~~l 314 (371)
.+ ..+.+...+++++++++|+|.|.+.... +.. .+.....+++.+|+.+++||-.= -|+....+..++
T Consensus 148 --~p---~~~~~~~~~~a~~l~~~Gad~I~i~Dt~-G~l--~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 148 --SP---VHTIDYFVKLAKEMQEMGADSICIKDMA-GIL--TPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred --CC---CCCHHHHHHHHHHHHHcCCCEEEEcCCC-CCC--CHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHH
Confidence 01 2356778899999999999999986532 111 11123356778888888775431 222357788899
Q ss_pred HcCCccEEE-----echHhhhCCcH
Q 017448 315 AENYTDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 315 ~~g~~D~V~-----~gR~~ladP~l 334 (371)
+.| ||.|- ||++ -.||.+
T Consensus 220 eaG-ad~vD~sv~glg~g-aGN~~t 242 (448)
T PRK12331 220 EAG-ADIIDTAISPFAGG-TSQPAT 242 (448)
T ss_pred HcC-CCEEEeeccccCCC-cCCHhH
Confidence 999 88774 5555 566653
No 418
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.59 E-value=1.1 Score=40.16 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=35.0
Q ss_pred chhhHhHHHhcC-CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhh
Q 017448 285 PYSLLPMRKAFD-GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 285 ~~~~~~ik~~~~-~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
..+++.++.-++ ++++.+||++++++.+.++.| +..|++|..++.
T Consensus 136 ~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 136 PSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFP 181 (196)
T ss_dssp HHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGS
T ss_pred HHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcC
Confidence 356777777665 789999999999999999999 899999987654
No 419
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=92.57 E-value=2 Score=39.22 Aligned_cols=129 Identities=15% Similarity=0.096 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
++-|..|.++|+|-|++. |-.....|. ...++|++|++.++.. +++.-+.-..
T Consensus 10 ~~EA~~a~~~gaDiID~K---------------~P~~GaLGA-------~~~~vi~~i~~~~~~~~pvSAtiGDlp---- 63 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLK---------------NPAEGALGA-------LFPWVIREIVAAVPGRKPVSATIGDLP---- 63 (235)
T ss_pred HHHHHHHHhCCCCEEEcc---------------CCCCCCCCC-------CCHHHHHHHHHHcCCCCceEEEecCCC----
Confidence 466788899999999974 333344443 2467888888888755 7777665311
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhH----hHHHhcC-CCeEeeCCC--------CHHH
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLL----PMRKAFD-GTFIASGGY--------NRDD 309 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~----~ik~~~~-~pVi~~Ggi--------t~~~ 309 (371)
..+ .....-+......||||+-|.-..... .....+.++ .+|..-. ..+++++-- ++.+
T Consensus 64 ---~~p-~~~~~aa~~~a~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~ 135 (235)
T PF04476_consen 64 ---MKP-GTASLAALGAAATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLD 135 (235)
T ss_pred ---CCc-hHHHHHHHHHHhcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHH
Confidence 112 222222333445799999874321110 001112222 2333222 336655432 2445
Q ss_pred HHHHHHcCCccEEEech
Q 017448 310 GNKAVAENYTDLVAYGR 326 (371)
Q Consensus 310 a~~~l~~g~~D~V~~gR 326 (371)
.-+...+-.||.||+-.
T Consensus 136 l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 136 LPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHHHHHHcCCCEEEEec
Confidence 55555554499999843
No 420
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.57 E-value=0.81 Score=43.18 Aligned_cols=110 Identities=9% Similarity=-0.007 Sum_probs=64.9
Q ss_pred ccCCCCCCCCc--hhhhhHH--HHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcC
Q 017448 196 VNDRTDQYGGS--LENRCRF--ALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILE 271 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~--~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~ 271 (371)
.|+|-+-+-+- ..|...+ +.+.|+.+|+..+...|.|... +.+++ .+..++|+|.|-+..
T Consensus 147 ~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~~~kIeVEv~------------~leea----~~a~~agaDiI~LDn 210 (278)
T PRK08385 147 EPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSVYKVVEVEVE------------SLEDA----LKAAKAGADIIMLDN 210 (278)
T ss_pred cccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCCCCcEEEEeC------------CHHHH----HHHHHcCcCEEEECC
Confidence 35666554443 2343333 4466667776665435555443 23333 334568999887643
Q ss_pred CCcccCCCCCCCCchhhHhHHHhc---CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 272 PRLFNAQDKLDAPPYSLLPMRKAF---DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~ik~~~---~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
.+ +.......+.+++.- ++.+.+.||+|.+..+++.+.| +|+|++|....
T Consensus 211 ~~-------~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~ 263 (278)
T PRK08385 211 MT-------PEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLD-VDVISLGALTH 263 (278)
T ss_pred CC-------HHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 21 111111222233321 3458899999999999999998 99999998765
No 421
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.53 E-value=2.3 Score=41.08 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccC----CCCCCCC-c---hhhhhHHHHHHHHHHHHHhCCcccEEEE--
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVND----RTDQYGG-S---LENRCRFALEIVEAVVNEIGAERVGIRL-- 234 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~----R~D~yGg-s---~enR~r~~~eiv~avR~~vg~~~i~vrl-- 234 (371)
+-+..|+++|+|+|..+. |-...+.++..+. +...|.+ + +-++..|..|....+.+.+.. .++.+
T Consensus 21 ~lI~~A~~aGAdavKFQ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~--~Gi~~~s 95 (327)
T TIGR03586 21 AMIEAAKAAGADAIKLQT---YTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKE--LGLTIFS 95 (327)
T ss_pred HHHHHHHHhCCCEEEeee---ccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHH--hCCcEEE
Confidence 334556779999999876 6777777665433 2234543 2 233355566666666555422 12222
Q ss_pred cCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHH---H
Q 017448 235 SPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDD---G 310 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~---a 310 (371)
.++ .. +-+..|++.|++++-|..+. ..+..+++.+.+ .+.||+..-|. |.++ |
T Consensus 96 tpf----------d~----~svd~l~~~~v~~~KI~S~~--------~~n~~LL~~va~-~gkPvilstG~~t~~Ei~~A 152 (327)
T TIGR03586 96 SPF----------DE----TAVDFLESLDVPAYKIASFE--------ITDLPLIRYVAK-TGKPIIMSTGIATLEEIQEA 152 (327)
T ss_pred ccC----------CH----HHHHHHHHcCCCEEEECCcc--------ccCHHHHHHHHh-cCCcEEEECCCCCHHHHHHH
Confidence 221 11 12345677899999886542 235566776665 47897766665 6544 5
Q ss_pred HHHHHcCCc-cEEE
Q 017448 311 NKAVAENYT-DLVA 323 (371)
Q Consensus 311 ~~~l~~g~~-D~V~ 323 (371)
.+.+.+.++ +++.
T Consensus 153 v~~i~~~g~~~i~L 166 (327)
T TIGR03586 153 VEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHCCCCcEEE
Confidence 555554446 5444
No 422
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=92.50 E-value=1.5 Score=44.54 Aligned_cols=137 Identities=18% Similarity=0.097 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCc
Q 017448 158 QIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPH 237 (371)
Q Consensus 158 ~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~ 237 (371)
.+++.|++.| .++|.|.|.|-.+. |. .+-+.+.++.+|+. |.. +..=++-.
T Consensus 95 Dvv~~fv~~A---~~~Gvd~irif~~l------------nd------------~~n~~~~i~~ak~~-G~~-v~~~i~~t 145 (467)
T PRK14041 95 DVVELFVKKV---AEYGLDIIRIFDAL------------ND------------IRNLEKSIEVAKKH-GAH-VQGAISYT 145 (467)
T ss_pred hhhHHHHHHH---HHCCcCEEEEEEeC------------CH------------HHHHHHHHHHHHHC-CCE-EEEEEEec
Confidence 4555666554 57899999876543 11 22345556666554 432 22112210
Q ss_pred cCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHH
Q 017448 238 ANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNK 312 (371)
Q Consensus 238 ~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~ 312 (371)
+. ...+.+...++++.+++.|+|.|.+.... +.. .+.....+++.+|+.+++||-. ..+ | ...+..
T Consensus 146 --~~---p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~-G~l--~P~~v~~Lv~~lk~~~~vpI~~-H~Hnt~GlA~AN~la 216 (467)
T PRK14041 146 --VS---PVHTLEYYLEFARELVDMGVDSICIKDMA-GLL--TPKRAYELVKALKKKFGVPVEV-HSHCTTGLASLAYLA 216 (467)
T ss_pred --cC---CCCCHHHHHHHHHHHHHcCCCEEEECCcc-CCc--CHHHHHHHHHHHHHhcCCceEE-EecCCCCcHHHHHHH
Confidence 00 12357888999999999999999886532 111 1122345677889888877533 332 2 577788
Q ss_pred HHHcCCccEEE-----echHhhhCCcH
Q 017448 313 AVAENYTDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 313 ~l~~g~~D~V~-----~gR~~ladP~l 334 (371)
+++.| +|.|- ||++. .||.+
T Consensus 217 AieaG-ad~vD~sv~~~g~ga-gN~at 241 (467)
T PRK14041 217 AVEAG-ADMFDTAISPFSMGT-SQPPF 241 (467)
T ss_pred HHHhC-CCEEEeeccccCCCC-CChhH
Confidence 99998 78774 55554 37754
No 423
>PLN02417 dihydrodipicolinate synthase
Probab=92.44 E-value=1.3 Score=41.72 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcC
Q 017448 163 FRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYM 241 (371)
Q Consensus 163 f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~ 241 (371)
+.+-.+...+.|.|||-+.+..| +|.+ =|.+.|.+++..+++. ++.. +|.+=++
T Consensus 24 ~~~~i~~l~~~Gv~Gi~~~GstG----E~~~-----------ls~~Er~~~~~~~~~~----~~~~~pvi~gv~------ 78 (280)
T PLN02417 24 YDSLVNMQIENGAEGLIVGGTTG----EGQL-----------MSWDEHIMLIGHTVNC----FGGKIKVIGNTG------ 78 (280)
T ss_pred HHHHHHHHHHcCCCEEEECccCc----chhh-----------CCHHHHHHHHHHHHHH----hCCCCcEEEECC------
Confidence 34444455678999999877665 2221 1346666665555544 3333 4443222
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe------eCC-CCHHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA------SGG-YNRDDGNKAV 314 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~------~Gg-it~~~a~~~l 314 (371)
....++++++++..+++|+|.+-+..|.+..+. ......+.+.|.+.. ||+. +|. ++++..+++.
T Consensus 79 ----~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~--~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~ 150 (280)
T PLN02417 79 ----SNSTREAIHATEQGFAVGMHAALHINPYYGKTS--QEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIA 150 (280)
T ss_pred ----CccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC--HHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHh
Confidence 224567899999999999999998877654322 111223445555543 8652 343 4788777776
Q ss_pred H
Q 017448 315 A 315 (371)
Q Consensus 315 ~ 315 (371)
+
T Consensus 151 ~ 151 (280)
T PLN02417 151 Q 151 (280)
T ss_pred c
Confidence 4
No 424
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.42 E-value=3.1 Score=38.16 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=71.7
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHH
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEA 250 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e 250 (371)
.++|+|-|-+|.=. ++ .-+..+++.||+. |- ..|+=|++. .+.+
T Consensus 79 ~~aGad~it~H~Ea-----------~~--------------~~~~~~i~~Ik~~-G~-kaGlalnP~---------T~~~ 122 (229)
T PRK09722 79 ADAGADFITLHPET-----------IN--------------GQAFRLIDEIRRA-GM-KVGLVLNPE---------TPVE 122 (229)
T ss_pred HHcCCCEEEECccC-----------Cc--------------chHHHHHHHHHHc-CC-CEEEEeCCC---------CCHH
Confidence 45699999998642 00 1145677888775 32 468888883 3555
Q ss_pred HHHHHHHHHhhcCccEEEEc--CCCcccCCCCCCCCchh---hHhHHHhc-----CCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 251 LGLYMAKALNKYQILYLHIL--EPRLFNAQDKLDAPPYS---LLPMRKAF-----DGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 251 ~~~~la~~l~~~Gvd~l~v~--~~~~~~~~~~~~~~~~~---~~~ik~~~-----~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
....++.. +|+|-+. .|.+... ...... ++++|+.. +..+-+-||++.+.+.++.+.| +|
T Consensus 123 ~l~~~l~~-----vD~VLvMsV~PGf~GQ----~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aG-ad 192 (229)
T PRK09722 123 SIKYYIHL-----LDKITVMTVDPGFAGQ----PFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAG-AD 192 (229)
T ss_pred HHHHHHHh-----cCEEEEEEEcCCCcch----hccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CC
Confidence 44444442 5666543 2332211 112222 23333332 2347788999999999999999 99
Q ss_pred EEEechH-hhh-CCcH
Q 017448 321 LVAYGRS-FLA-NPDL 334 (371)
Q Consensus 321 ~V~~gR~-~la-dP~l 334 (371)
.+.+|+. ++. +++.
T Consensus 193 ~~V~Gss~iF~~~~d~ 208 (229)
T PRK09722 193 VFIVGTSGLFNLDEDI 208 (229)
T ss_pred EEEEChHHHcCCCCCH
Confidence 9999976 665 4564
No 425
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=92.32 E-value=2.8 Score=39.34 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=75.8
Q ss_pred hhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 017448 87 EQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLA 166 (371)
Q Consensus 87 ~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~a 166 (371)
+.++..+++++.++++|-.+.+++.++.+. .+ +.+.+.
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~------------------------------~~------------~~~~~~ 143 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISGY------------------------------SD------------EELLEL 143 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecCC------------------------------CH------------HHHHHH
Confidence 467888999999999999988888764220 01 346777
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQD 245 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~ 245 (371)
++.+.++|.|.|-|- |-+|... ++-+.++++++|+.++++ +|++ ...+
T Consensus 144 ~~~~~~~g~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~~i~~--H~Hn------- 192 (266)
T cd07944 144 LELVNEIKPDVFYIV-------------------DSFGSMY---PEDIKRIISLLRSNLDKDIKLGF--HAHN------- 192 (266)
T ss_pred HHHHHhCCCCEEEEe-------------------cCCCCCC---HHHHHHHHHHHHHhcCCCceEEE--EeCC-------
Confidence 788888999998763 3334322 344689999999999754 6665 3322
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
+...+..-+....++|+++++.+-..++
T Consensus 193 --~~Gla~AN~laA~~aGa~~vd~s~~G~G 220 (266)
T cd07944 193 --NLQLALANTLEAIELGVEIIDATVYGMG 220 (266)
T ss_pred --CccHHHHHHHHHHHcCCCEEEEecccCC
Confidence 1222333334445789999998765443
No 426
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.30 E-value=1.1 Score=42.32 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=65.7
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
.|+|-+-|-+- ..|...+. .+.++++|+..+.. +|.|-.. +.+++. +..++|+|.|-+
T Consensus 157 ~~HR~gL~d~vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~------------tleea~----ea~~~gaDiI~L 220 (281)
T PRK06106 157 MNHRFGLDDAVLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVD------------TLDQLE----EALELGVDAVLL 220 (281)
T ss_pred ccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeC------------CHHHHH----HHHHcCCCEEEe
Confidence 56776665443 34555543 57777778877632 4444332 234333 334789999876
Q ss_pred cCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 270 LEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
...+ ...+++.-+.+ ..++-+.||+|.+...++.+.| +|+|++|....
T Consensus 221 Dn~s-----------~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth 270 (281)
T PRK06106 221 DNMT-----------PDTLREAVAIVAGRAITEASGRITPETAPAIAASG-VDLISVGWLTH 270 (281)
T ss_pred CCCC-----------HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 3321 11122211122 3568999999999999999998 99999997654
No 427
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=92.23 E-value=1.5 Score=43.09 Aligned_cols=86 Identities=17% Similarity=0.064 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
++|++.+.....+|.|.|.... .|-+|-++| ++.|.+...+.+++..+..|.. +..+ |..
T Consensus 141 ~~~a~~~~~~~~gGvD~IKdDe---~l~~~~~~p------------~~eRv~~v~~av~~a~~eTG~~~~y~~--Nit-- 201 (364)
T cd08210 141 AELAELAYAFALGGIDIIKDDH---GLADQPFAP------------FEERVKACQEAVAEANAETGGRTLYAP--NVT-- 201 (364)
T ss_pred HHHHHHHHHHHhcCCCeeecCc---cccCccCCC------------HHHHHHHHHHHHHHHHhhcCCcceEEE--ecC--
Confidence 4567777777889999997542 244444444 6899999999999999999875 3333 331
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEP 272 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~ 272 (371)
. ..++..+.++.++++|.+.+-+.-.
T Consensus 202 ------a-~~~em~~ra~~a~~~Ga~~vMv~~~ 227 (364)
T cd08210 202 ------G-PPTQLLERARFAKEAGAGGVLIAPG 227 (364)
T ss_pred ------C-CHHHHHHHHHHHHHcCCCEEEeecc
Confidence 1 2447888999999999998876543
No 428
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.20 E-value=1.2 Score=42.16 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=63.7
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEc
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHIL 270 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~ 270 (371)
.|+|-+-+-.- ..|...+. .+.++.+|+..+..+|.|-.. +.+++. +..++|+|.|-+.
T Consensus 163 ~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~------------tl~ea~----eal~~gaDiI~LD 226 (289)
T PRK07896 163 VNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVD------------SLEQLD----EVLAEGAELVLLD 226 (289)
T ss_pred ccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcC------------CHHHHH----HHHHcCCCEEEeC
Confidence 35555443332 34544443 466777777665434544332 233332 3346899998764
Q ss_pred CCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 271 EPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
.. .+.......+.+++.. ++.+.+.||+|.+...++.+.| +|+|++|....
T Consensus 227 nm-------~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~ 278 (289)
T PRK07896 227 NF-------PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETG-VDYLAVGALTH 278 (289)
T ss_pred CC-------CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 22 1111111222222222 3458899999999999999998 99999998665
No 429
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.19 E-value=0.45 Score=45.80 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHHhh--cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEE
Q 017448 253 LYMAKALNK--YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVA 323 (371)
Q Consensus 253 ~~la~~l~~--~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~ 323 (371)
.+.++.|.+ +|+|+|.|....-. .....+.++.||+.++...+..|++ |++.++.++..| +|.|=
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGh-----s~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~vK 177 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGY-----SEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIVK 177 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc-----HHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEEE
Confidence 455666666 59999987432110 0113456788999886445566777 999999999998 99873
No 430
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.18 E-value=0.71 Score=42.10 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc----CCCeEeeCCC-CHHHHHHHHHcCCccEE
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF----DGTFIASGGY-NRDDGNKAVAENYTDLV 322 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~----~~pVi~~Ggi-t~~~a~~~l~~g~~D~V 322 (371)
+.+++..+++.|.+.|+..++|+..+ + .....++.+++.+ +.-+++.|-+ |.++++++++.| ++|+
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~t-------p-~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aG-A~Fi 95 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRG-------D-FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLG-ANFI 95 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-------C-cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcC-CCEE
Confidence 46779999999999999999997642 1 1234455555333 3337888887 999999999999 9988
Q ss_pred EechHhhhCCcHHHHHHh
Q 017448 323 AYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 323 ~~gR~~ladP~l~~k~~~ 340 (371)
..= -.||++.+..++
T Consensus 96 VsP---~~~~~v~~~~~~ 110 (222)
T PRK07114 96 VTP---LFNPDIAKVCNR 110 (222)
T ss_pred ECC---CCCHHHHHHHHH
Confidence 752 367888877665
No 431
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=92.13 E-value=1.6 Score=43.21 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=82.9
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
.++|.++|+|.|.|-..- | --++..+++.+.+.-.+.+.+.++.+|+. | +.|.++..+ ...
T Consensus 81 i~~a~~~g~~~i~i~~~~--------S--d~h~~~~~~~s~~~~l~~~~~~v~~a~~~-G---~~v~~~~ed-----~~r 141 (378)
T PRK11858 81 IDASIDCGVDAVHIFIAT--------S--DIHIKHKLKKTREEVLERMVEAVEYAKDH-G---LYVSFSAED-----ASR 141 (378)
T ss_pred HHHHHhCCcCEEEEEEcC--------C--HHHHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEecc-----CCC
Confidence 445667899998875543 1 12445566777777677777777776663 3 245555422 123
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCccE
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYTDL 321 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~D~ 321 (371)
.+.+...++++.+.++|++.|.+.... +.. .+......++.+++.+++|+- .... + ...+..+++.| ++.
T Consensus 142 ~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~l~-~H~Hnd~GlA~AN~laAv~aG-a~~ 216 (378)
T PRK11858 142 TDLDFLIEFAKAAEEAGADRVRFCDTV-GIL--DPFTMYELVKELVEAVDIPIE-VHCHNDFGMATANALAGIEAG-AKQ 216 (378)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeccC-CCC--CHHHHHHHHHHHHHhcCCeEE-EEecCCcCHHHHHHHHHHHcC-CCE
Confidence 457888999999999999999886532 111 112233456778888777643 3333 3 45677888888 666
Q ss_pred E
Q 017448 322 V 322 (371)
Q Consensus 322 V 322 (371)
|
T Consensus 217 v 217 (378)
T PRK11858 217 V 217 (378)
T ss_pred E
Confidence 5
No 432
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.10 E-value=0.43 Score=48.65 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+.++.|.+.|++.|.+....-. .....+.++.||+.++.-.+..|++ |.+.++.+++.| +|+|.+|
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~-----~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG-ad~v~vg 296 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGH-----QEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG-ADIVKVG 296 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc-----cHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC-CCEEEEC
Confidence 457888899999999876332111 1123456788999885445555787 999999999999 9998744
No 433
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=92.07 E-value=1.8 Score=40.84 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEE--EEcCccCcC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGI--RLSPHANYM 241 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~v--rl~~~~~~~ 241 (371)
+..++|.++|.|.|.|-...- + .++..+.+-+.++-.....+.++..|+. |-. .+.+ -++.. +
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~S--------d--~~~~~~~~~s~~~~~~~~~~~v~~ak~~-G~~v~~~i~~~f~~~--~- 142 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSAS--------E--TFSQKNINCSIAESLERFEPVAELAKAA-GLRVRGYVSTAFGCP--Y- 142 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecC--------H--HHHHHHcCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEeEecCC--C-
Confidence 456788899999988765431 1 1233344555666666677777777665 322 1222 22221 1
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHHHH
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKAVA 315 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~l~ 315 (371)
....+.+...++++.+.+.|+|.|.+.... +.. .+......++.+++.++ +|+- .... | ...+..+++
T Consensus 143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~i~-~H~Hnd~GlA~AN~laA~~ 216 (274)
T cd07938 143 --EGEVPPERVAEVAERLLDLGCDEISLGDTI-GVA--TPAQVRRLLEAVLERFPDEKLA-LHFHDTRGQALANILAALE 216 (274)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-Ccc--CHHHHHHHHHHHHHHCCCCeEE-EEECCCCChHHHHHHHHHH
Confidence 123367888999999999999999886532 111 12223456677888875 5543 3333 3 567788999
Q ss_pred cCCccEEE
Q 017448 316 ENYTDLVA 323 (371)
Q Consensus 316 ~g~~D~V~ 323 (371)
.| +|.|-
T Consensus 217 aG-a~~id 223 (274)
T cd07938 217 AG-VRRFD 223 (274)
T ss_pred hC-CCEEE
Confidence 98 77664
No 434
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.04 E-value=1.7 Score=40.51 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=83.7
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
.+++.++|.|.|.+.... |+. +...+++-+.+.=.+.+.++++.+|+. | +.|+++..+ ...
T Consensus 75 v~~a~~~g~~~i~i~~~~--------s~~--~~~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~-----~~~ 135 (259)
T cd07939 75 IEAALRCGVTAVHISIPV--------SDI--HLAHKLGKDRAWVLDQLRRLVGRAKDR-G---LFVSVGAED-----ASR 135 (259)
T ss_pred HHHHHhCCcCEEEEEEec--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEeecc-----CCC
Confidence 456778999999886543 111 111233444444445555666666553 3 245566532 123
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCccE
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYTDL 321 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~D~ 321 (371)
.+.+...++++.+.+.|++.|.+.... +.. .+.....+++.+++.+++|+ ..... | ...+..+++.| ||.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~l-~~H~Hn~~Gla~An~laAi~aG-~~~ 210 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFADTV-GIL--DPFTTYELIRRLRAATDLPL-EFHAHNDLGLATANTLAAVRAG-ATH 210 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCCCC-CCC--CHHHHHHHHHHHHHhcCCeE-EEEecCCCChHHHHHHHHHHhC-CCE
Confidence 467888999999999999999885531 111 11123346677888887664 33333 3 46778899998 776
Q ss_pred E-----EechHhhhCC
Q 017448 322 V-----AYGRSFLANP 332 (371)
Q Consensus 322 V-----~~gR~~ladP 332 (371)
| +||++ -.|+
T Consensus 211 vd~s~~G~G~~-aGN~ 225 (259)
T cd07939 211 VSVTVNGLGER-AGNA 225 (259)
T ss_pred EEEeccccccc-ccCc
Confidence 6 46654 3444
No 435
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=92.01 E-value=3.1 Score=40.41 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=71.6
Q ss_pred hchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 017448 90 EAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRN 169 (371)
Q Consensus 90 ~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~ 169 (371)
+..++.++.+++.|-.+.++|..+++. .+ +.+++.++.
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a~~~------------------------------~~------------e~l~~~a~~ 152 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMA------------------------------PP------------EKLAEQAKL 152 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeccCC------------------------------CH------------HHHHHHHHH
Confidence 457888889999998888887643210 11 456788888
Q ss_pred HHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCcCCCCCh
Q 017448 170 AIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYMEAQDSNP 248 (371)
Q Consensus 170 a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~~~~~~~ 248 (371)
+.++|.|.|-|- |-+|... +..+.++++++|+.++++ +|++=... .
T Consensus 153 ~~~~Ga~~i~i~-------------------DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~Hn--n--------- 199 (337)
T PRK08195 153 MESYGAQCVYVV-------------------DSAGALL---PEDVRDRVRALRAALKPDTQVGFHGHN--N--------- 199 (337)
T ss_pred HHhCCCCEEEeC-------------------CCCCCCC---HHHHHHHHHHHHHhcCCCCeEEEEeCC--C---------
Confidence 999999998764 3334332 344689999999999754 56653332 1
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCc
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRL 274 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~ 274 (371)
...+..-+....++|+++|+.+-..+
T Consensus 200 lGla~ANslaAi~aGa~~iD~Sl~Gl 225 (337)
T PRK08195 200 LGLGVANSLAAVEAGATRIDGSLAGL 225 (337)
T ss_pred cchHHHHHHHHHHhCCCEEEecChhh
Confidence 11222333344568999998765443
No 436
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=91.98 E-value=0.26 Score=44.81 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=39.3
Q ss_pred hhHhHHHhcC--CCeEeeCCCCHHHHHHHHHcCCccEEEechHhhhCCcHHHHH
Q 017448 287 SLLPMRKAFD--GTFIASGGYNRDDGNKAVAENYTDLVAYGRSFLANPDLPKRF 338 (371)
Q Consensus 287 ~~~~ik~~~~--~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~ 338 (371)
-+..+|+.++ .++.++|||+++.+...-+.+ +|++.+||+....+|-...+
T Consensus 152 e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~r-vd~iVVGR~It~A~dP~~aa 204 (218)
T PRK13305 152 DLARMKALSDIGLELSITGGITPADLPLFKDIR-VKAFIAGRALAGAANPAQVA 204 (218)
T ss_pred HHHHHHHHhCCCCcEEEeCCcCccccccccccC-CCEEEECCcccCCCCHHHHH
Confidence 3566777764 348899999988877766666 79999999999988765443
No 437
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=91.91 E-value=1.6 Score=41.25 Aligned_cols=138 Identities=11% Similarity=0.017 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+..++|.++|++.|.|-.... +. +.+.+.+-+.+.-...+.++++..|+. | +.|+++..+ +. +.
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S--------~~--h~~~~~~~t~~e~l~~~~~~i~~a~~~-G---~~v~~~~~d-~~-~~ 141 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGS--------LK--HCTEQLRKTPEEHFADIREVIEYAIKN-G---IEVNIYLED-WS-NG 141 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCC--------HH--HHHHHHCcCHHHHHHHHHHHHHHHHhC-C---CEEEEEEEe-CC-CC
Confidence 457788899999998876442 21 222233344444444555555555443 3 345555532 21 11
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHHHHcCC
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKAVAENY 318 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~l~~g~ 318 (371)
...+.+...++++.+.+.|++.|.+.... +.. .+.....+++.+++.++ +|+ ..... | ...+..+++.|
T Consensus 142 ~r~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~l~~~l~~~~~~~~i-~~H~Hnd~Gla~AN~laA~~aG- 216 (280)
T cd07945 142 MRDSPDYVFQLVDFLSDLPIKRIMLPDTL-GIL--SPFETYTYISDMVKRYPNLHF-DFHAHNDYDLAVANVLAAVKAG- 216 (280)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEecCCC-CCC--CHHHHHHHHHHHHhhCCCCeE-EEEeCCCCCHHHHHHHHHHHhC-
Confidence 13357788999999999999999886532 111 11123345667777764 443 44444 3 46678899998
Q ss_pred ccEEE
Q 017448 319 TDLVA 323 (371)
Q Consensus 319 ~D~V~ 323 (371)
+|.|-
T Consensus 217 a~~vd 221 (280)
T cd07945 217 IKGLH 221 (280)
T ss_pred CCEEE
Confidence 77664
No 438
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=91.78 E-value=13 Score=36.02 Aligned_cols=86 Identities=13% Similarity=-0.059 Sum_probs=56.9
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCC---CcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEP---RLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY 305 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~---~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi 305 (371)
||.+|=.. ..+.++....++.+...|-.-+.+.++ +|. ++.....+...+..+|+.+..|||+.-..
T Consensus 202 PViLk~G~---------~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~-~~~~~~ldl~ai~~lk~~~~lPVi~d~sH 271 (335)
T PRK08673 202 PVLLKRGM---------SATIEEWLMAAEYILAEGNPNVILCERGIRTFE-TATRNTLDLSAVPVIKKLTHLPVIVDPSH 271 (335)
T ss_pred cEEEeCCC---------CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCC-CcChhhhhHHHHHHHHHhcCCCEEEeCCC
Confidence 78887654 235677888888888888766666554 231 12122234456677888889998764333
Q ss_pred --C-----HHHHHHHHHcCCccEEEec
Q 017448 306 --N-----RDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 306 --t-----~~~a~~~l~~g~~D~V~~g 325 (371)
. +..+..+++-| +|++++=
T Consensus 272 ~~G~~~~v~~~a~AAvA~G-AdGliIE 297 (335)
T PRK08673 272 ATGKRDLVEPLALAAVAAG-ADGLIVE 297 (335)
T ss_pred CCccccchHHHHHHHHHhC-CCEEEEE
Confidence 1 46788899998 9977764
No 439
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=91.75 E-value=6.5 Score=40.56 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=125.1
Q ss_pred CCCCceeCCeec--CCceeeccCCCCCCCCCCCCHHHHHHHHHHcc-cCceEEEccceeCCCCCCCCCCCCCCChhhhhc
Q 017448 15 LLTPYKMGPFNL--SHRIVLAPLTRNRSYNNIPQPHAILYYSQRTT-NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEA 91 (371)
Q Consensus 15 Lf~P~~ig~~~l--~NRiv~apm~~~~~~~g~~~~~~~~~y~~~a~-g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~ 91 (371)
....++||++.+ -|+|....|+.....| ++..++=-.+.+. |+.+|=.- .-+.+..+.
T Consensus 14 ~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D---~~atv~Qi~~L~~aGceiVRvt----------------vp~~~~A~a 74 (606)
T PRK00694 14 KTHPVRIGNLFVGSEHSIKIQSMTTTATTD---VDGTVRQICALQEWGCDIVRVT----------------VQGLKEAQA 74 (606)
T ss_pred cceEEEEcCEeECCCCceEEEecCCCCccc---HHHHHHHHHHHHHcCCCEEEEc----------------CCCHHHHHh
Confidence 456788898776 6899999998764422 4445555566665 55444321 123567889
Q ss_pred hHHHHHHHHHcCC--eeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCC--CCCCCCCCCh----HHHHHHHHHH
Q 017448 92 WKPIVDAVHEKGG--IFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGG--DWSPPRPLRT----EEIPQIVNDF 163 (371)
Q Consensus 92 ~~~l~~~ih~~g~--~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~--~~~~~~~mt~----~eI~~ii~~f 163 (371)
++.+.+...+.|. ++++-++-.-+.+.... -....++.+|+.-+- ......+-|. +|++.|-+.|
T Consensus 75 l~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~-------~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~ 147 (606)
T PRK00694 75 CEHIKERLIQQGISIPLVADIHFFPQAAMHVA-------DFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKF 147 (606)
T ss_pred HHHHHHHHhccCCCCCEEeecCCChHHHHHHH-------HhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHH
Confidence 9999999888885 56665543222221000 012223444321110 0001122343 4577888999
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANYM 241 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~~ 241 (371)
..-.+.|++.|. .|.|-.-||.|-.++++ +||...+--..-++|-++-+++. |- + .|++|-|.-
T Consensus 148 ~~vV~~ake~~~-~IRIGvN~GSL~~~i~~--------~yG~tpegmVeSAle~~~i~e~~-~f~diviS~KsSnv---- 213 (606)
T PRK00694 148 SPLVEKCKRLGK-AMRIGVNHGSLSERVMQ--------RYGDTIEGMVYSALEYIEVCEKL-DYRDVVFSMKSSNP---- 213 (606)
T ss_pred HHHHHHHHHCCC-CEEEecCCcCchHHHHH--------HhCCCHHHHHHHHHHHHHHHHHC-CCCcEEEEEEcCCH----
Confidence 999999999876 56777778989888886 47766555555566666655443 32 2 466666531
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccE-EEE
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILY-LHI 269 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~-l~v 269 (371)
....+....+++.+.+.|.+| ||+
T Consensus 214 ----~~mi~AyrlLa~~~d~eg~~YPLHL 238 (606)
T PRK00694 214 ----KVMVAAYRQLAKDLDARGWLYPLHL 238 (606)
T ss_pred ----HHHHHHHHHHHHHhhccCCCcCcee
Confidence 224555666777777777666 454
No 440
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.70 E-value=0.55 Score=47.52 Aligned_cols=68 Identities=18% Similarity=0.076 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
..+-++.|.++|+|.|+|....-. .......++.||+.+ ++||++.+..|.+++..+++.| +|+|-+|
T Consensus 225 ~~~r~~~L~~aG~d~I~vd~a~g~-----~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG-ad~i~vg 293 (450)
T TIGR01302 225 DKERAEALVKAGVDVIVIDSSHGH-----SIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG-ADGLRVG 293 (450)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCc-----HhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC-CCEEEEC
Confidence 456677888999999998543210 112345678888885 6788884445999999999998 9999644
No 441
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.59 E-value=7.5 Score=36.20 Aligned_cols=166 Identities=12% Similarity=0.061 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
+-.|+.+.++|||.|-+ |. .+....+- ..|--.=+ +.-.+..+++|++.++...|.+.+ ++ .
T Consensus 22 ~~sA~l~e~aG~d~i~v--Gd-s~~~~~lG-----~pDt~~vt----l~em~~~~~~V~r~~~~p~viaD~-~f---g-- 83 (254)
T cd06557 22 YPTAKLADEAGVDVILV--GD-SLGMVVLG-----YDSTLPVT----LDEMIYHTRAVRRGAPRALVVADM-PF---G-- 83 (254)
T ss_pred HHHHHHHHHcCCCEEEE--CH-HHHHHHcC-----CCCCCCcC----HHHHHHHHHHHHhcCCCCeEEEeC-CC---C--
Confidence 46788899999999963 21 11111110 11110112 233566777777777532255555 21 1
Q ss_pred CCCChHHHHHHH-HHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeE-----------eeCCC----
Q 017448 244 QDSNPEALGLYM-AKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFI-----------ASGGY---- 305 (371)
Q Consensus 244 ~~~~~~e~~~~l-a~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi-----------~~Ggi---- 305 (371)
+..++.+++..- .+.++++|++.+++..+ ......|+..+ .+||+ ..|++
T Consensus 84 ~y~~~~~~av~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~g 151 (254)
T cd06557 84 SYQTSPEQALRNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQG 151 (254)
T ss_pred cccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceecc
Confidence 112335555555 44555599999998443 13445555543 46766 34443
Q ss_pred -CH-------HHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCCC--------CCCCCcccccCCCCCCcccc
Q 017448 306 -NR-------DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAAL--------NKYDRSTFYTPDPVVGYTDY 364 (371)
Q Consensus 306 -t~-------~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~--------~~~~~~~~~~~~~~~g~~~~ 364 (371)
|. +++..+.+.| ||.|.+ ..+- .++.+++.+..++ ..||-..+-+ ++-.|....
T Consensus 152 rt~~~a~~~i~ra~a~~~AG-A~~i~l--E~v~-~~~~~~i~~~v~iP~igiGaG~~~dgqvlv~-~D~lG~~~~ 221 (254)
T cd06557 152 KTEEEAERLLEDALALEEAG-AFALVL--ECVP-AELAKEITEALSIPTIGIGAGPDCDGQVLVW-HDMLGLSPG 221 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CCEEEE--cCCC-HHHHHHHHHhCCCCEEEeccCCCCCceeehH-HhhcCCCCC
Confidence 23 3444555566 999887 3332 3678888777543 3577777777 666777654
No 442
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=91.58 E-value=0.81 Score=42.28 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=67.6
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCC----CCCCC----chhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRT----DQYGG----SLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN 239 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~----D~yGg----s~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~ 239 (371)
+.|+++|+|+|..+. |-...++++....+. +.+++ ++-++..|..|-...+.+.+-..-|.+=.++++
T Consensus 3 ~~A~~aGaDaVKFQ~---~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpfd- 78 (241)
T PF03102_consen 3 DAAAEAGADAVKFQT---FTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLELSEEQHKELFEYCKELGIDFFSTPFD- 78 (241)
T ss_dssp HHHHHHT-SEEEEEE---B-HHHHCSGGGGG-------TT-SSTHHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE-S-
T ss_pred HHHHHhCCCEEEEEE---EchhhhcChhhhcccccccCCCCCCcHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCCC-
Confidence 346789999999864 557778877543321 11222 245566778888888887773221222223321
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHH---HHHHHH-
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRD---DGNKAV- 314 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~---~a~~~l- 314 (371)
. +.++ .|++.|++++-|..+. -.+..+++.+.+ .+.|||..-|. |.+ .|-+.+
T Consensus 79 ---------~-~s~d---~l~~~~~~~~KIaS~d--------l~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~~~~ 136 (241)
T PF03102_consen 79 ---------E-ESVD---FLEELGVPAYKIASGD--------LTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVEVLR 136 (241)
T ss_dssp ---------H-HHHH---HHHHHT-SEEEE-GGG--------TT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHHHHH
T ss_pred ---------H-HHHH---HHHHcCCCEEEecccc--------ccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHHHHH
Confidence 1 1233 3566689999886542 235566776666 67897766665 654 455666
Q ss_pred HcCCccEEEe
Q 017448 315 AENYTDLVAY 324 (371)
Q Consensus 315 ~~g~~D~V~~ 324 (371)
+.|..+++.+
T Consensus 137 ~~~~~~l~ll 146 (241)
T PF03102_consen 137 EAGNEDLVLL 146 (241)
T ss_dssp HHCT--EEEE
T ss_pred hcCCCCEEEE
Confidence 5665665544
No 443
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.46 E-value=6.9 Score=35.10 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
++..+.++.+.++|+..|||-.- +.+ .++.|+.+++..++-.||. ..
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~----------------tp~-----------a~~~I~~l~~~~~~~~vGA----GT-- 62 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLR----------------TPA-----------ALDAIRAVAAEVEEAIVGA----GT-- 62 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC----------------Ccc-----------HHHHHHHHHHHCCCCEEee----Ee--
Confidence 34566777888999999998542 221 5788999998875313432 11
Q ss_pred CcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCcc
Q 017448 241 MEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTD 320 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D 320 (371)
=.+. +-++...++|.+|+- .+..+...++.. +..++|++ -|-+|+.++..+++.| +|
T Consensus 63 -----Vl~~----e~a~~ai~aGA~Fiv-----------SP~~~~~vi~~a-~~~~i~~i-PG~~TptEi~~A~~~G-a~ 119 (201)
T PRK06015 63 -----ILNA----KQFEDAAKAGSRFIV-----------SPGTTQELLAAA-NDSDVPLL-PGAATPSEVMALREEG-YT 119 (201)
T ss_pred -----CcCH----HHHHHHHHcCCCEEE-----------CCCCCHHHHHHH-HHcCCCEe-CCCCCHHHHHHHHHCC-CC
Confidence 1122 345667789999986 233344444433 34455543 3777999999999999 89
Q ss_pred EEEechHhhh-CCcHHHHHHh
Q 017448 321 LVAYGRSFLA-NPDLPKRFEL 340 (371)
Q Consensus 321 ~V~~gR~~la-dP~l~~k~~~ 340 (371)
+|=+==+-.. -|.+++.++.
T Consensus 120 ~vK~FPa~~~GG~~yikal~~ 140 (201)
T PRK06015 120 VLKFFPAEQAGGAAFLKALSS 140 (201)
T ss_pred EEEECCchhhCCHHHHHHHHh
Confidence 8876544334 5888888775
No 444
>PLN02979 glycolate oxidase
Probab=91.46 E-value=2.7 Score=41.09 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=35.6
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
.|+.++++|+.+++|||+-|-.+.++|+.+++.| +|.|.++
T Consensus 211 tW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G-vd~I~Vs 251 (366)
T PLN02979 211 SWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 251 (366)
T ss_pred CHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcC-CCEEEEC
Confidence 3456788999999999998878999999999999 9998764
No 445
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.44 E-value=1.6 Score=45.67 Aligned_cols=139 Identities=18% Similarity=0.081 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc
Q 017448 159 IVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA 238 (371)
Q Consensus 159 ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~ 238 (371)
+++.|++ +|.++|.|.|.|-.+... .+-+...++.+|+. |.. +.+-++-.
T Consensus 97 vv~~~v~---~A~~~Gvd~irif~~lnd------------------------~~n~~~~i~~ak~~-G~~-v~~~i~~t- 146 (592)
T PRK09282 97 VVEKFVE---KAAENGIDIFRIFDALND------------------------VRNMEVAIKAAKKA-GAH-VQGTISYT- 146 (592)
T ss_pred hhHHHHH---HHHHCCCCEEEEEEecCh------------------------HHHHHHHHHHHHHc-CCE-EEEEEEec-
Confidence 3444444 456789999987654411 12345556666653 432 22222210
Q ss_pred CcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEe----eCCCCHHHHHHHH
Q 017448 239 NYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIA----SGGYNRDDGNKAV 314 (371)
Q Consensus 239 ~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~----~Ggit~~~a~~~l 314 (371)
..+ ..+.+...++++++++.|+|.|.+.... +.. .+.....+.+.+|+.+++||-. +.|+.......++
T Consensus 147 -~~p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~-G~~--~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv 219 (592)
T PRK09282 147 -TSP---VHTIEKYVELAKELEEMGCDSICIKDMA-GLL--TPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAV 219 (592)
T ss_pred -cCC---CCCHHHHHHHHHHHHHcCCCEEEECCcC-CCc--CHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHH
Confidence 011 2357889999999999999999986532 111 1122345677888888877533 2223357778899
Q ss_pred HcCCccEEE-----echHhhhCCcHHH
Q 017448 315 AENYTDLVA-----YGRSFLANPDLPK 336 (371)
Q Consensus 315 ~~g~~D~V~-----~gR~~ladP~l~~ 336 (371)
+.| ||.|- ||++. .||.+-.
T Consensus 220 ~aG-ad~vD~ai~g~g~~a-gn~~~e~ 244 (592)
T PRK09282 220 EAG-VDIIDTAISPLAFGT-SQPPTES 244 (592)
T ss_pred HhC-CCEEEeeccccCCCc-CCHhHHH
Confidence 998 88774 56554 4776543
No 446
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=91.40 E-value=2.3 Score=39.32 Aligned_cols=78 Identities=22% Similarity=0.168 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEechH
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~ 327 (371)
..+..++-++.|+++|+-.+.+ +. - -...++.|-+.+++|+|+.|.=.--|++-++- -|++++-++
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivl-E~---------V-p~~lA~~IT~~lsiPtIGIGAG~~cDGQvLV~---~D~lGl~~~ 224 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVL-EC---------V-PAELAKEITEKLSIPTIGIGAGPGCDGQVLVM---HDMLGLSGG 224 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEE-ec---------c-HHHHHHHHHhcCCCCEEeecCCCCCCceEEEe---eeccccCCC
Confidence 4455566788999999887765 21 1 13678899999999998877421112222221 356666432
Q ss_pred hhhCCcHHHHHHhC
Q 017448 328 FLANPDLPKRFELN 341 (371)
Q Consensus 328 ~ladP~l~~k~~~g 341 (371)
.-|.++++..+-
T Consensus 225 --~~PkFvK~y~~l 236 (268)
T COG0413 225 --HKPKFVKRYADL 236 (268)
T ss_pred --CCCcHHHHHhcc
Confidence 567787777644
No 447
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=91.31 E-value=3.4 Score=39.46 Aligned_cols=123 Identities=12% Similarity=0.009 Sum_probs=67.0
Q ss_pred ccCCCCCCCCc--hhhhhHHH---HHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHh--hcCccEEE
Q 017448 196 VNDRTDQYGGS--LENRCRFA---LEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALN--KYQILYLH 268 (371)
Q Consensus 196 ~N~R~D~yGgs--~enR~r~~---~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~--~~Gvd~l~ 268 (371)
.|+|-+-+-+- .+|..++. .+.++++|+..+......|+-.. -++.+++.+.++.+. .+|+|.|-
T Consensus 163 ~~HR~gLsd~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVE--------v~tleea~ea~~~~~~~~agaDiIm 234 (308)
T PLN02716 163 KNHRMGLFDMVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVE--------TRTLEEVKEVLEYLSDTKTSLTRVM 234 (308)
T ss_pred cccCCCCCceEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEE--------ECCHHHHHHHHHhcccccCCCCEEE
Confidence 57777766664 35666653 46777777733211112223221 013444443332111 17899887
Q ss_pred EcCCCcccCCCCCCCCchhhHhHHHhc--CCCeEeeCCCCHHHHHHHHHcCCccEEEechHhh
Q 017448 269 ILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFIASGGYNRDDGNKAVAENYTDLVAYGRSFL 329 (371)
Q Consensus 269 v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR~~l 329 (371)
+......... .......+++..+.+ ..++-+.||+|.+...++...| +|+|++|....
T Consensus 235 LDnm~~~~~~--~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tG-VD~Is~Galth 294 (308)
T PLN02716 235 LDNMVVPLEN--GDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTG-VTYISSGALTH 294 (308)
T ss_pred eCCCcccccc--cCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcC-CCEEEeCcccc
Confidence 6443221110 011122222222222 2568899999999999999988 99999997654
No 448
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=91.28 E-value=4.6 Score=37.85 Aligned_cols=165 Identities=10% Similarity=0.062 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.-.|+.+.++|||.|-+ |. .+....+- ..|--.=+ +.-.+..+++|++.++..+|.+.+ ++.
T Consensus 25 ~~sArl~e~aG~d~i~v--Gd-s~~~~~lG-----~~Dt~~vt----l~em~~h~~~V~r~~~~p~vvaD~-pfg----- 86 (264)
T PRK00311 25 YPFAKLFDEAGVDVILV--GD-SLGMVVLG-----YDSTLPVT----LDDMIYHTKAVARGAPRALVVADM-PFG----- 86 (264)
T ss_pred HHHHHHHHHcCCCEEEE--CH-HHHHHHcC-----CCCCCCcC----HHHHHHHHHHHHhcCCCCcEEEeC-CCC-----
Confidence 46788999999999964 21 11111111 11110112 233466677777776533466655 221
Q ss_pred CCCChHHHH-HHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc--CCCeE-----------eeCCC----
Q 017448 244 QDSNPEALG-LYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF--DGTFI-----------ASGGY---- 305 (371)
Q Consensus 244 ~~~~~~e~~-~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pVi-----------~~Ggi---- 305 (371)
+...+.+++ ....+.++++|++.+++..+ ......|+..+ .+||+ ..|++
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~g 154 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQG 154 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeec
Confidence 112334444 44455666699999998443 12334444443 57876 33433
Q ss_pred -CH-------HHHHHHHHcCCccEEEechHhhhCCcHHHHHHhCCCC--------CCCCCcccccCCCCCCccc
Q 017448 306 -NR-------DDGNKAVAENYTDLVAYGRSFLANPDLPKRFELNAAL--------NKYDRSTFYTPDPVVGYTD 363 (371)
Q Consensus 306 -t~-------~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~--------~~~~~~~~~~~~~~~g~~~ 363 (371)
|. +++..+.+.| ||+|.+ ..+ ..++.+++.+..++ ..||-..+-+ ++-.|+.+
T Consensus 155 rt~~~a~~~i~ra~a~~eAG-A~~i~l--E~v-~~~~~~~i~~~l~iP~igiGaG~~~dgqvlv~-~D~lG~~~ 223 (264)
T PRK00311 155 RDEEAAEKLLEDAKALEEAG-AFALVL--ECV-PAELAKEITEALSIPTIGIGAGPDCDGQVLVW-HDMLGLFS 223 (264)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CCEEEE--cCC-CHHHHHHHHHhCCCCEEEeccCCCCCceeeeH-HhhcCCCC
Confidence 22 2344455566 999887 333 33788888877543 3577777777 66677744
No 449
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=91.25 E-value=2.1 Score=40.63 Aligned_cols=134 Identities=14% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcc---cEEEEcCccCcCcCC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAER---VGIRLSPHANYMEAQ 244 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~---i~vrl~~~~~~~~~~ 244 (371)
++|.++|.|.|.|-.... +. +...++|-+.++-.+.+.++|+..|+. |-.. |..=++.. + .
T Consensus 86 e~A~~~g~~~v~i~~~~s--------~~--~~~~n~~~~~~e~l~~~~~~v~~ak~~-g~~v~~~i~~~~~~~--~---~ 149 (287)
T PRK05692 86 EAALAAGADEVAVFASAS--------EA--FSQKNINCSIAESLERFEPVAEAAKQA-GVRVRGYVSCVLGCP--Y---E 149 (287)
T ss_pred HHHHHcCCCEEEEEEecC--------HH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCEEEEEEEEEecCC--C---C
Confidence 677789999998765442 11 222344555566566666777776664 3221 11112221 1 1
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHHHHcCC
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKAVAENY 318 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~l~~g~ 318 (371)
+..+.+...++++.+.+.|+|.|.+.... +.. .+......++.+|+.++ +|+ ..... | ...+..+++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~G~d~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~i-~~H~Hn~~Gla~AN~laA~~aG- 224 (287)
T PRK05692 150 GEVPPEAVADVAERLFALGCYEISLGDTI-GVG--TPGQVRAVLEAVLAEFPAERL-AGHFHDTYGQALANIYASLEEG- 224 (287)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecccc-Ccc--CHHHHHHHHHHHHHhCCCCeE-EEEecCCCCcHHHHHHHHHHhC-
Confidence 13367888999999999999999886532 111 11223356777888876 554 33333 2 57778899999
Q ss_pred ccEE
Q 017448 319 TDLV 322 (371)
Q Consensus 319 ~D~V 322 (371)
+|.|
T Consensus 225 ~~~i 228 (287)
T PRK05692 225 ITVF 228 (287)
T ss_pred CCEE
Confidence 8887
No 450
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=91.23 E-value=0.42 Score=42.61 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=44.8
Q ss_pred hhhHhHHHhcCCCeE--eeCCC-CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHh
Q 017448 286 YSLLPMRKAFDGTFI--ASGGY-NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 286 ~~~~~ik~~~~~pVi--~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 340 (371)
++.+..++.-+.||+ +.||+ ||.+|.-+++-| ||.|.+|.+.+..+|-+++++.
T Consensus 197 dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLG-CdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 197 DLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLG-CDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred HHHHHHHHcCCCceEEecccCcCChhHHHHHHHcC-CCeEEeccccccCCCHHHHHHH
Confidence 455666666667854 77888 999999999999 9999999999999998887654
No 451
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=91.15 E-value=2.9 Score=40.93 Aligned_cols=102 Identities=10% Similarity=0.008 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcc---cCCCCCCCCc---hh
Q 017448 214 ALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLF---NAQDKLDAPP---YS 287 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~---~~~~~~~~~~---~~ 287 (371)
..+-++.+|+..++.|+.+=|+.... ...+.+. +.+.++..+.|++.++-.... .+. ....+. +.
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~-----~~~~~~~---~~~~~~~~~adal~l~l~~~qe~~~p~-g~~~f~~~le~ 177 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQL-----YGYGVEE---AQRAVEMIEADALQIHLNPLQELVQPE-GDRDFRGWLDN 177 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCcccc-----CCCCHHH---HHHHHHhcCCCcEEEeCccchhhcCCC-CcccHHHHHHH
Confidence 45667888888876577775554211 0223443 344455556778877653211 111 111122 45
Q ss_pred hHhHHHhcCCCeEe--eC-CCCHHHHHHHHHcCCccEEEec
Q 017448 288 LLPMRKAFDGTFIA--SG-GYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 288 ~~~ik~~~~~pVi~--~G-git~~~a~~~l~~g~~D~V~~g 325 (371)
++.+++.+++||++ +| +++.+++..+.+.| +|+|-++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 67788888999885 33 36899999998888 9998873
No 452
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=90.96 E-value=1.9 Score=39.07 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCccc--EEEEcCccC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERV--GIRLSPHAN 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i--~vrl~~~~~ 239 (371)
++.+.+..+...|+|.|||-.-+ +.. .-...+.+.+..+|+.++ .|| .+|-...
T Consensus 11 ~~~~~~~~~~~~~~D~vElRlD~------------------l~~---~~~~~~~~~l~~lr~~~~-~piI~T~R~~~e-- 66 (224)
T PF01487_consen 11 ELLAELEEAESSGADAVELRLDY------------------LEN---DSAEDISEQLAELRRSLD-LPIIFTVRTKEE-- 66 (224)
T ss_dssp HHHHHHHHHHHTTTSEEEEEGGG------------------STT---TSHHHHHHHHHHHHHHCT-SEEEEE--BGGG--
T ss_pred HHHHHHHHHHhcCCCEEEEEecc------------------ccc---cChHHHHHHHHHHHHhCC-CCEEEEeccccc--
Confidence 34455556666699999976544 222 124556888999999983 454 5554421
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcC
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILE 271 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~ 271 (371)
. .....+.+...++...+.+.|++||+|..
T Consensus 67 G--G~~~~~~~~~~~ll~~~~~~~~d~iDiE~ 96 (224)
T PF01487_consen 67 G--GRFQGSEEEYLELLERAIRLGPDYIDIEL 96 (224)
T ss_dssp T--SSBSS-HHHHHHHHHHHHHHTSSEEEEEG
T ss_pred C--CCCcCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 1 11233567788999999999999999843
No 453
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=90.95 E-value=1.9 Score=38.13 Aligned_cols=132 Identities=21% Similarity=0.303 Sum_probs=85.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCccc
Q 017448 151 LRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERV 230 (371)
Q Consensus 151 mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i 230 (371)
|=.++.++.|++|+ +||++.+-+|.=- +++ ..++++.||+. | -.+
T Consensus 71 mMV~~Peq~V~~~a-------~agas~~tfH~E~---------------~q~-----------~~~lv~~ir~~-G-mk~ 115 (224)
T KOG3111|consen 71 MMVENPEQWVDQMA-------KAGASLFTFHYEA---------------TQK-----------PAELVEKIREK-G-MKV 115 (224)
T ss_pred EeecCHHHHHHHHH-------hcCcceEEEEEee---------------ccC-----------HHHHHHHHHHc-C-Cee
Confidence 44666777888775 4789999888532 221 67889999884 2 156
Q ss_pred EEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEE--cCCCcccCCCCCCCCchhhHhHHHhcCCCeE-eeCCCCH
Q 017448 231 GIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHI--LEPRLFNAQDKLDAPPYSLLPMRKAFDGTFI-ASGGYNR 307 (371)
Q Consensus 231 ~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v--~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi-~~Ggit~ 307 (371)
++-|++ +.+++....++. -+|++-| .+|.++.+.+ -.....-.+.+|+.+..+.| +-||+++
T Consensus 116 G~alkP---------gT~Ve~~~~~~~-----~~D~vLvMtVePGFGGQkF-me~mm~KV~~lR~kyp~l~ievDGGv~~ 180 (224)
T KOG3111|consen 116 GLALKP---------GTPVEDLEPLAE-----HVDMVLVMTVEPGFGGQKF-MEDMMPKVEWLREKYPNLDIEVDGGVGP 180 (224)
T ss_pred eEEeCC---------CCcHHHHHHhhc-----cccEEEEEEecCCCchhhh-HHHHHHHHHHHHHhCCCceEEecCCcCc
Confidence 777777 345554333333 3555433 2454432210 00011234578888777755 8899999
Q ss_pred HHHHHHHHcCCccEEEechHhhhCCc
Q 017448 308 DDGNKAVAENYTDLVAYGRSFLANPD 333 (371)
Q Consensus 308 ~~a~~~l~~g~~D~V~~gR~~ladP~ 333 (371)
+...++.+.| ++++..|.+.+.-+|
T Consensus 181 ~ti~~~a~AG-AN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 181 STIDKAAEAG-ANMIVAGSAVFGAAD 205 (224)
T ss_pred chHHHHHHcC-CCEEEecceeecCCC
Confidence 9999999999 999999999887665
No 454
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=90.93 E-value=3.5 Score=39.44 Aligned_cols=149 Identities=11% Similarity=0.025 Sum_probs=78.4
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC-c-ccEEEEcCccCc-C
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA-E-RVGIRLSPHANY-M 241 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~-~-~i~vrl~~~~~~-~ 241 (371)
-.+++.++.|.|+|.+-.-. |.| +..--|+. =.+.|+.|-+.|.. + +..+-+-.++.. .
T Consensus 110 ~s~~rike~GadavK~Llyy--------------~pD--~~~ein~~--k~a~vervg~ec~a~dipf~lE~ltYd~~~~ 171 (325)
T TIGR01232 110 WSAKRLKEQGANAVKFLLYY--------------DVD--DAEEINIQ--KKAYIERIGSECVAEDIPFFLEVLTYDDNIP 171 (325)
T ss_pred ccHHHHHHhCCCeEEEEEEe--------------CCC--CChHHHHH--HHHHHHHHHHHHHHCCCCeEEEEeccCCCCC
Confidence 45788899999999976543 333 11112222 23444444444421 2 333333222111 0
Q ss_pred cCCCC----ChHHHHHHHHHHHhh--cCccEEEEcCCCcccCCCC--CC----CCchhhHhHHH---hcCCC-eEeeCCC
Q 017448 242 EAQDS----NPEALGLYMAKALNK--YQILYLHILEPRLFNAQDK--LD----APPYSLLPMRK---AFDGT-FIASGGY 305 (371)
Q Consensus 242 ~~~~~----~~~e~~~~la~~l~~--~Gvd~l~v~~~~~~~~~~~--~~----~~~~~~~~ik~---~~~~p-Vi~~Ggi 305 (371)
+.... ...+..++.++.+.+ .|||.+-|--|.......+ .. ......+.+++ ..++| |+.+.|.
T Consensus 172 ~~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~yt~~eA~~~f~eq~~~~~~P~i~LSaGV 251 (325)
T TIGR01232 172 DNGSVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVYTKEEAAQHFKDQDAATHLPYIYLSAGV 251 (325)
T ss_pred CCCcHHHHHhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccccHHHHHHHHHHHhhccCCCEEEEcCCC
Confidence 00000 013334567777777 7899988755432111100 00 11233444554 56789 8888888
Q ss_pred CHHHHHH----HHHcCCc--cEEEechHhhhCC
Q 017448 306 NRDDGNK----AVAENYT--DLVAYGRSFLANP 332 (371)
Q Consensus 306 t~~~a~~----~l~~g~~--D~V~~gR~~ladP 332 (371)
+.+...+ +.+.| + .+|..||+.-.++
T Consensus 252 ~~~~F~~~l~~A~~aG-a~fsGvL~GRAtW~~~ 283 (325)
T TIGR01232 252 SAELFQETLKFAHEAG-AKFNGVLCGRATWSGA 283 (325)
T ss_pred CHHHHHHHHHHHHHcC-CCcceEEeehhhhHhh
Confidence 7655544 44456 5 7999999988776
No 455
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.88 E-value=2 Score=39.25 Aligned_cols=122 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcC
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYM 241 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~ 241 (371)
.+.+..+.+.++|+|.+-+..--| +|. | | ..|-.++|+++|+..++.++-+++-.
T Consensus 20 ~l~~~~~~l~~~~~~~~H~DimDg----~fv-p--n-------------~~~G~~~v~~lr~~~~~~~lDvHLm~----- 74 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHVDVMDG----HFV-P--N-------------LSFGPPVVKSLRKHLPNTFLDCHLMV----- 74 (228)
T ss_pred HHHHHHHHHHHcCCCEEEEecccC----ccC-C--C-------------cCcCHHHHHHHHhcCCCCCEEEEECC-----
Confidence 457778888899999886655443 222 1 1 23347889999987644466666654
Q ss_pred cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCC-CchhhHhHHHhcCCC-eEeeCCCCHHHHHHHHHcCCc
Q 017448 242 EAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDA-PPYSLLPMRKAFDGT-FIASGGYNRDDGNKAVAENYT 319 (371)
Q Consensus 242 ~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~-~~~~~~~ik~~~~~p-Vi~~Ggit~~~a~~~l~~g~~ 319 (371)
.+ .+ ..++.+.++|+|++++|.-. ... ....++.+|+.=... |..+-..+.++.+.++....+
T Consensus 75 ----~~-p~---~~i~~~~~~Gad~itvH~ea-------~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~v 139 (228)
T PTZ00170 75 ----SN-PE---KWVDDFAKAGASQFTFHIEA-------TEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLV 139 (228)
T ss_pred ----CC-HH---HHHHHHHHcCCCEEEEeccC-------CchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchh
Confidence 22 22 35578889999999997542 111 123344555542122 333333456777777765668
Q ss_pred cEEE
Q 017448 320 DLVA 323 (371)
Q Consensus 320 D~V~ 323 (371)
|.|.
T Consensus 140 D~Vl 143 (228)
T PTZ00170 140 DMVL 143 (228)
T ss_pred hhHH
Confidence 8774
No 456
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.87 E-value=5 Score=37.59 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=82.7
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRL 165 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 165 (371)
.+.+..+.++++.+|++|-++++ +.--|. .++ .+.+ ..+.
T Consensus 123 ~~~l~~l~~v~~ea~~~G~Plla-~~prG~----------------------------------~~~-~~~~----~ia~ 162 (264)
T PRK08227 123 HQSIKNIIQLVDAGLRYGMPVMA-VTAVGK----------------------------------DMV-RDAR----YFSL 162 (264)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEE-EecCCC----------------------------------CcC-chHH----HHHH
Confidence 46788899999999999998886 321110 011 1112 5789
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQD 245 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~ 245 (371)
||+.|.|.|+|.|++... | +-.+.|-++++ -||.|.=.+
T Consensus 163 aaRiaaELGADiVK~~y~---------------------~----------~~f~~vv~a~~-vPVviaGG~--------- 201 (264)
T PRK08227 163 ATRIAAEMGAQIIKTYYV---------------------E----------EGFERITAGCP-VPIVIAGGK--------- 201 (264)
T ss_pred HHHHHHHHcCCEEecCCC---------------------H----------HHHHHHHHcCC-CcEEEeCCC---------
Confidence 999999999999997431 1 12223333443 355543222
Q ss_pred CChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHc
Q 017448 246 SNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAE 316 (371)
Q Consensus 246 ~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~ 316 (371)
..+.+++++.+....+.|...+.+ .++.++.. .+ ...++.+++.+ -++.+.++|.+++.+
T Consensus 202 k~~~~~~L~~v~~ai~aGa~Gv~~-GRNIfQ~~-~p---~~~~~al~~IV------h~~~s~~eA~~~~~~ 261 (264)
T PRK08227 202 KLPERDALEMCYQAIDEGASGVDM-GRNIFQSE-HP---VAMIKAVHAVV------HENETAKEAYELYLS 261 (264)
T ss_pred CCCHHHHHHHHHHHHHcCCceeee-chhhhccC-CH---HHHHHHHHHHH------hCCCCHHHHHHHHHH
Confidence 114466788888778899888876 44444322 11 13445555543 255678888777654
No 457
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=90.84 E-value=6.1 Score=36.85 Aligned_cols=112 Identities=16% Similarity=0.057 Sum_probs=70.2
Q ss_pred hhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 017448 89 VEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGR 168 (371)
Q Consensus 89 ~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~ 168 (371)
....++.++.+++.|-.+.+++..+++. .| +.+.+.++
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~~~~~~~~~------------------------------~~------------~~~~~~~~ 148 (263)
T cd07943 111 ADVSEQHIGAARKLGMDVVGFLMMSHMA------------------------------SP------------EELAEQAK 148 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCC------------------------------CH------------HHHHHHHH
Confidence 4567889999999998888877643210 11 34667777
Q ss_pred HHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCCh
Q 017448 169 NAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNP 248 (371)
Q Consensus 169 ~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~ 248 (371)
.+.++|.|.|-|- |-+|... +.-+.++++.+|+.++..+|++=.. +.
T Consensus 149 ~~~~~G~d~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~l~~H~H--n~--------- 195 (263)
T cd07943 149 LMESYGADCVYVT-------------------DSAGAML---PDDVRERVRALREALDPTPVGFHGH--NN--------- 195 (263)
T ss_pred HHHHcCCCEEEEc-------------------CCCCCcC---HHHHHHHHHHHHHhCCCceEEEEec--CC---------
Confidence 7888999988763 3334332 3446899999999987424555333 21
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
...+..-+....++|+++++.+-...+
T Consensus 196 ~GlA~AN~laAi~aGa~~vd~s~~GlG 222 (263)
T cd07943 196 LGLAVANSLAAVEAGATRIDGSLAGLG 222 (263)
T ss_pred cchHHHHHHHHHHhCCCEEEeeccccc
Confidence 111222223334679999998765443
No 458
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.84 E-value=2 Score=42.23 Aligned_cols=133 Identities=12% Similarity=0.038 Sum_probs=78.4
Q ss_pred HHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCC
Q 017448 167 GRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDS 246 (371)
Q Consensus 167 A~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~ 246 (371)
.++|.++|.|.|.|..+. |+. +...+++-+.+.-.+.+.+.++.+|+. | +.|.++..+. ..
T Consensus 77 i~~a~~~g~~~i~i~~~~--------Sd~--~~~~~~~~~~~~~~~~~~~~i~~ak~~-G---~~v~~~~eda-----~r 137 (363)
T TIGR02090 77 IDKAIDCGVDSIHTFIAT--------SPI--HLKYKLKKSRDEVLEKAVEAVEYAKEH-G---LIVEFSAEDA-----TR 137 (363)
T ss_pred HHHHHHcCcCEEEEEEcC--------CHH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-C---CEEEEEEeec-----CC
Confidence 556778999999886553 111 222334545555455556666666553 3 2345554321 13
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCccE
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYTDL 321 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~D~ 321 (371)
.+.+...++++.+.+.|++.|.+.... +.. .+......++.+++.+++|+ ..... + ...+..+++.| +|.
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~DT~-G~~--~P~~v~~li~~l~~~~~~~l-~~H~Hnd~GlA~AN~laA~~aG-a~~ 212 (363)
T TIGR02090 138 TDIDFLIKVFKRAEEAGADRINIADTV-GVL--TPQKMEELIKKLKENVKLPI-SVHCHNDFGLATANSIAGVKAG-AEQ 212 (363)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCC-Ccc--CHHHHHHHHHHHhcccCceE-EEEecCCCChHHHHHHHHHHCC-CCE
Confidence 457788999999999999999886532 111 11123345667777776554 23333 2 46677888888 666
Q ss_pred EE
Q 017448 322 VA 323 (371)
Q Consensus 322 V~ 323 (371)
|-
T Consensus 213 vd 214 (363)
T TIGR02090 213 VH 214 (363)
T ss_pred EE
Confidence 53
No 459
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.73 E-value=0.71 Score=44.57 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCc--cEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEEEec
Q 017448 252 GLYMAKALNKYQI--LYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 252 ~~~la~~l~~~Gv--d~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~g 325 (371)
..+-+..|.++|+ |+|.+....- . .....+.++.||+.++.+.+..|.+ |.+++..+++.| +|+|.+|
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~g---h--~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG-ad~i~vg 168 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHG---H--SDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG-ADATKVG 168 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCC---c--hHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-cCEEEEC
Confidence 3456777888865 9988733210 0 1112456888999987444555666 999999999998 9998755
No 460
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=90.63 E-value=6.4 Score=36.80 Aligned_cols=115 Identities=14% Similarity=0.004 Sum_probs=71.6
Q ss_pred hhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 017448 86 EEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRL 165 (371)
Q Consensus 86 ~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~ 165 (371)
++.++..++.++.+++.|..+.+++.+.++ ..+ +.+.+
T Consensus 110 ~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------------------------~~~------------~~~~~ 147 (268)
T cd07940 110 EEVLERAVEAVEYAKSHGLDVEFSAEDATR------------------------------TDL------------DFLIE 147 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeeecCCC------------------------------CCH------------HHHHH
Confidence 456788889999999999776655433221 011 34577
Q ss_pred HHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC--cccEEEEcCccCcCcC
Q 017448 166 AGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA--ERVGIRLSPHANYMEA 243 (371)
Q Consensus 166 aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~--~~i~vrl~~~~~~~~~ 243 (371)
.++.+.++|.|.|-|- |-.|-.. +.-+.++++.+|+..++ -+|++-...
T Consensus 148 ~~~~~~~~G~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~~~~i~l~~H~Hn------- 198 (268)
T cd07940 148 VVEAAIEAGATTINIP-------------------DTVGYLT---PEEFGELIKKLKENVPNIKVPISVHCHN------- 198 (268)
T ss_pred HHHHHHHcCCCEEEEC-------------------CCCCCCC---HHHHHHHHHHHHHhCCCCceeEEEEecC-------
Confidence 7788888999988763 2334322 34468899999999874 245543332
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
+...+..-+....++|+++|+.+-..++
T Consensus 199 ----~~GlA~An~laAi~aG~~~iD~s~~GlG 226 (268)
T cd07940 199 ----DLGLAVANSLAAVEAGARQVECTINGIG 226 (268)
T ss_pred ----CcchHHHHHHHHHHhCCCEEEEEeeccc
Confidence 1112223333344679999998765443
No 461
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=90.60 E-value=3.7 Score=40.31 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=35.7
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
.|+.++++|+.+++|||+-|-.+.++++.+++.| +|.|.++
T Consensus 212 tW~di~wlr~~~~~PiivKgV~~~~dA~~a~~~G-vd~I~Vs 252 (367)
T PLN02493 212 SWKDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIVS 252 (367)
T ss_pred CHHHHHHHHhccCCCEEeecCCCHHHHHHHHHcC-CCEEEEC
Confidence 4556788999999999998878999999999999 9998763
No 462
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.59 E-value=4.6 Score=39.37 Aligned_cols=152 Identities=19% Similarity=0.101 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCc-ccC--CCCCCC--CchhhhhHH----HHHHHHHHHHHhCCc-ccEEE
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQ-VND--RTDQYG--GSLENRCRF----ALEIVEAVVNEIGAE-RVGIR 233 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~-~N~--R~D~yG--gs~enR~r~----~~eiv~avR~~vg~~-~i~vr 233 (371)
.+..+.+.++||.+|++..-- ..|+ .|. |-.++- .++.|+.-+ +..+++.+++.. .+ ||.+-
T Consensus 72 ~~~~~~~~~~G~Gavv~ktvt-------~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~-~~~pvivs 143 (344)
T PRK05286 72 GEAIDALGALGFGFVEVGTVT-------PRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY-RGIPLGIN 143 (344)
T ss_pred hHHHHHHHHcCCCEEEeCCcC-------CCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc-CCCcEEEE
Confidence 456666778999999976532 1111 122 222222 335555444 455666666654 33 78888
Q ss_pred EcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcC--CCcccCCC--CCCCCchhhHhHHHhcC-----CCeEe--e
Q 017448 234 LSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILE--PRLFNAQD--KLDAPPYSLLPMRKAFD-----GTFIA--S 302 (371)
Q Consensus 234 l~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~--~~~~~~~~--~~~~~~~~~~~ik~~~~-----~pVi~--~ 302 (371)
|+..... ......+++.++++.+.+ ++|+|++-- +....... .+......++.||+.++ +||++ .
T Consensus 144 I~~~~~~---~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls 219 (344)
T PRK05286 144 IGKNKDT---PLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIA 219 (344)
T ss_pred EecCCCC---CcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeC
Confidence 8653211 012346677788887765 589987632 32211000 00011235677888887 88653 2
Q ss_pred CCCCH---HHHHHHHHcCCccEEEechH
Q 017448 303 GGYNR---DDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 303 Ggit~---~~a~~~l~~g~~D~V~~gR~ 327 (371)
-+++. .+..+++++..+|+|.+.=.
T Consensus 220 p~~~~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 220 PDLSDEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred CCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 23442 23334444444899887543
No 463
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=90.49 E-value=4.4 Score=36.78 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=58.0
Q ss_pred CC-chhhhhHHHHHHHHHHHHHhCCc--c--cEEEEcCccC--cC-cCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 204 GG-SLENRCRFALEIVEAVVNEIGAE--R--VGIRLSPHAN--YM-EAQDSNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 204 Gg-s~enR~r~~~eiv~avR~~vg~~--~--i~vrl~~~~~--~~-~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
|| |+|.-.-|...+++.+|+..|.. + +..-++-.+. .+ ...|+++.+.....++.|++.|+|++-+..-+.
T Consensus 8 GGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~- 86 (230)
T COG1794 8 GGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLPTNTM- 86 (230)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEeCCcH-
Confidence 55 78888899999999999999754 2 2221111111 11 224566777778899999999999998743221
Q ss_pred cCCCCCCCCchhhHhHHHhcCCCeE
Q 017448 276 NAQDKLDAPPYSLLPMRKAFDGTFI 300 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~ik~~~~~pVi 300 (371)
..++..|++.+++|++
T Consensus 87 ---------H~~~d~iq~~~~iPll 102 (230)
T COG1794 87 ---------HKVADDIQKAVGIPLL 102 (230)
T ss_pred ---------HHHHHHHHHhcCCCee
Confidence 2345667777777765
No 464
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.41 E-value=5.6 Score=38.58 Aligned_cols=81 Identities=20% Similarity=0.094 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccC
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHAN 239 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~ 239 (371)
+.+++.++.+.++|.|.|-|- |-+|... +.-+.++++++|+.++++ +|++=... .
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~-------------------DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~Hn--n 198 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIV-------------------DSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHH--N 198 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEc-------------------cCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCC--C
Confidence 457888888899999998764 3334332 334689999999999755 56663332 1
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCc
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRL 274 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~ 274 (371)
...+..-+....++|+++|+.+-..+
T Consensus 199 ---------lGla~ANslaAi~aGa~~iD~Sl~G~ 224 (333)
T TIGR03217 199 ---------LSLAVANSIAAIEAGATRIDASLRGL 224 (333)
T ss_pred ---------CchHHHHHHHHHHhCCCEEEeecccc
Confidence 11122333344568999999876443
No 465
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=90.34 E-value=4.9 Score=35.55 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhCCcccEE--EEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhH
Q 017448 214 ALEIVEAVVNEIGAERVGI--RLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPM 291 (371)
Q Consensus 214 ~~eiv~avR~~vg~~~i~v--rl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~i 291 (371)
..+.++.+|+..++.+|.+ ++.. .. ..+++.+.++|+|++.+|.... .......++.+
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~-----------~~---~~~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~ 99 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTAD-----------AG---ALEAEMAFKAGADIVTVLGAAP------LSTIKKAVKAA 99 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEecc-----------cc---HHHHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHH
Confidence 3789999999865434433 3332 11 1356778899999999875320 10112234444
Q ss_pred HHhcCCCeEe--eCCCCHHHHHHHHHcCCccEEEec
Q 017448 292 RKAFDGTFIA--SGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 292 k~~~~~pVi~--~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
++ .+++++. .+-.|+++..+++..| +|+|.+.
T Consensus 100 ~~-~g~~~~v~~~~~~t~~e~~~~~~~~-~d~v~~~ 133 (202)
T cd04726 100 KK-YGKEVQVDLIGVEDPEKRAKLLKLG-VDIVILH 133 (202)
T ss_pred HH-cCCeEEEEEeCCCCHHHHHHHHHCC-CCEEEEc
Confidence 43 4566554 4666998888877766 9999884
No 466
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=90.29 E-value=3.1 Score=37.34 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCcc-CcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHA-NYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~-~~~~ 242 (371)
.+.|..|+++|+|-||+.++- -..=|+| -..+++.+++.+.- ||-|=|+|.. +|.
T Consensus 10 ~~~a~~A~~~GAdRiELc~~l---~~GGlTP-------------------S~g~i~~~~~~~~i-pv~vMIRpr~gdF~- 65 (201)
T PF03932_consen 10 LEDALAAEAGGADRIELCSNL---EVGGLTP-------------------SLGLIRQAREAVDI-PVHVMIRPRGGDFV- 65 (201)
T ss_dssp HHHHHHHHHTT-SEEEEEBTG---GGT-B----------------------HHHHHHHHHHTTS-EEEEE--SSSS-S--
T ss_pred HHHHHHHHHcCCCEEEECCCc---cCCCcCc-------------------CHHHHHHHHhhcCC-ceEEEECCCCCCcc-
Confidence 467888999999999986532 2222333 25677777776643 4444344422 121
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
...+..+...+-++.+.+.|+|.+.+
T Consensus 66 -Ys~~E~~~M~~dI~~~~~~GadG~Vf 91 (201)
T PF03932_consen 66 -YSDEEIEIMKEDIRMLRELGADGFVF 91 (201)
T ss_dssp ---HHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred -CCHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 11224455566677788889888765
No 467
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.24 E-value=2.1 Score=39.52 Aligned_cols=138 Identities=18% Similarity=0.109 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.+.++++.++|+|.|.|-..--- .++ .-+++-+.+.....+.+.++.+++. | +.+.++... ...+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~---------~~~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~-~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THS---------RKNLNKSREEDLENAEEAIEAAKEA-G---LEVEGSLED-AFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHH---------HHHhCCCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEe-ecCC
Confidence 45677888999999998765421 111 1123333444455556666665553 3 223333311 1100
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHHHHcC
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKAVAEN 317 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~l~~g 317 (371)
..+.++..++++.+.+.|++.|.+... .+.. .+......++.+++.++ +++- .... + ...+..+++.|
T Consensus 142 --~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~--~P~~v~~li~~l~~~~~~~~~~-~H~Hn~~gla~an~laA~~aG 215 (265)
T cd03174 142 --KTDPEYVLEVAKALEEAGADEISLKDT-VGLA--TPEEVAELVKALREALPDVPLG-LHTHNTLGLAVANSLAALEAG 215 (265)
T ss_pred --CCCHHHHHHHHHHHHHcCCCEEEechh-cCCc--CHHHHHHHHHHHHHhCCCCeEE-EEeCCCCChHHHHHHHHHHcC
Confidence 145677889999999999999987542 1111 12223346677888887 5543 3333 3 57788899988
Q ss_pred CccEEE
Q 017448 318 YTDLVA 323 (371)
Q Consensus 318 ~~D~V~ 323 (371)
||.|-
T Consensus 216 -~~~id 220 (265)
T cd03174 216 -ADRVD 220 (265)
T ss_pred -CCEEE
Confidence 77664
No 468
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.24 E-value=4.9 Score=35.75 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHh
Q 017448 211 CRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLP 290 (371)
Q Consensus 211 ~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ 290 (371)
.++..++|+.+|+..++..+.+.+...+ +. .+.++++.++|+|++.+|.-. +.......++.
T Consensus 36 ~~~g~~~i~~l~~~~~~~~i~~d~k~~d---------~~---~~~~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~ 97 (206)
T TIGR03128 36 KNEGIEAVKEMKEAFPDRKVLADLKTMD---------AG---EYEAEQAFAAGADIVTVLGVA------DDATIKGAVKA 97 (206)
T ss_pred HHhCHHHHHHHHHHCCCCEEEEEEeecc---------ch---HHHHHHHHHcCCCEEEEeccC------CHHHHHHHHHH
Confidence 3455899999999875434443332210 11 124677889999999887531 11011233444
Q ss_pred HHHhcCCCeEee--CCCC-HHHHHHHHHcCCccEEEechH
Q 017448 291 MRKAFDGTFIAS--GGYN-RDDGNKAVAENYTDLVAYGRS 327 (371)
Q Consensus 291 ik~~~~~pVi~~--Ggit-~~~a~~~l~~g~~D~V~~gR~ 327 (371)
+++ .+++++.. +--| .+++..+.+.| +|+|.+..+
T Consensus 98 ~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~v~~~pg 135 (206)
T TIGR03128 98 AKK-HGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTG 135 (206)
T ss_pred HHH-cCCEEEEEecCCCChHHHHHHHHHcC-CCEEEEcCC
Confidence 444 47776543 2234 47788887776 999998643
No 469
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=90.10 E-value=6.2 Score=38.57 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=38.2
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEe----chHhhhCC
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAY----GRSFLANP 332 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~----gR~~ladP 332 (371)
.+..++++++.+++||++-|-.++++++.+++.| +|.|.+ ||.+-.-|
T Consensus 209 ~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 209 SPADIEFIAKISGLPVIVKGIQSPEDADVAINAG-ADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcC-CCEEEEeCCCCccCCCCc
Confidence 3456778999999999988766999999999998 999988 55543333
No 470
>PRK15452 putative protease; Provisional
Probab=90.10 E-value=7.9 Score=39.11 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
.++++-|.++|+|+|-+-.. .+|.|...-.=+.+ -+.+.++-+++ -|. .|.|.++...
T Consensus 13 ~e~l~aAi~~GADaVY~G~~-----------~~~~R~~~~~f~~e----dl~eav~~ah~-~g~-kvyvt~n~i~----- 70 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQP-----------RYSLRVRNNEFNHE----NLALGINEAHA-LGK-KFYVVVNIAP----- 70 (443)
T ss_pred HHHHHHHHHCCCCEEEECCC-----------ccchhhhccCCCHH----HHHHHHHHHHH-cCC-EEEEEecCcC-----
Confidence 36777888999999997432 24555421111121 24444444444 222 4566666421
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcC
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILE 271 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~ 271 (371)
.+...+......+.+.+.|+|.|-|..
T Consensus 71 -~e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 71 -HNAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred -CHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 123455567778888899999988754
No 471
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=89.86 E-value=7.9 Score=35.86 Aligned_cols=81 Identities=17% Similarity=0.087 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-ccEEEEcCccCcCc
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RVGIRLSPHANYME 242 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i~vrl~~~~~~~~ 242 (371)
.+.|..|+++|+|-|||..+- -..=|+| | ..+++.+++.+.-. .+.||-+..+ |.
T Consensus 11 ~~~a~~A~~~GAdRiELc~~L---~~GGlTP-----------S--------~g~i~~~~~~~~ipv~vMIRPR~gd-F~- 66 (248)
T PRK11572 11 MECALTAQQAGADRIELCAAP---KEGGLTP-----------S--------LGVLKSVRERVTIPVHPIIRPRGGD-FC- 66 (248)
T ss_pred HHHHHHHHHcCCCEEEEccCc---CCCCcCC-----------C--------HHHHHHHHHhcCCCeEEEEecCCCC-CC-
Confidence 467889999999999985432 1112222 1 45677777776432 2455555422 21
Q ss_pred CCCCChHHHHHHHHHHHhhcCccEEEE
Q 017448 243 AQDSNPEALGLYMAKALNKYQILYLHI 269 (371)
Q Consensus 243 ~~~~~~~e~~~~la~~l~~~Gvd~l~v 269 (371)
......+...+-++.+.+.|+|.+-+
T Consensus 67 -Ys~~E~~~M~~di~~~~~~GadGvV~ 92 (248)
T PRK11572 67 -YSDGEFAAMLEDIATVRELGFPGLVT 92 (248)
T ss_pred -CCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 11234555566677788889888765
No 472
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=89.85 E-value=0.97 Score=42.74 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=52.0
Q ss_pred HHHhhcCccEEEEcCCC-cccCCCCCCCCchhhHhHHHhcC--CCeEeeCCC-CHHHHHHHHHcCCccEEEechHhhh
Q 017448 257 KALNKYQILYLHILEPR-LFNAQDKLDAPPYSLLPMRKAFD--GTFIASGGY-NRDDGNKAVAENYTDLVAYGRSFLA 330 (371)
Q Consensus 257 ~~l~~~Gvd~l~v~~~~-~~~~~~~~~~~~~~~~~ik~~~~--~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~gR~~la 330 (371)
....+.|++.|-||.-. ....+ .+.-...+.+|-+++. +||..-||+ +-.|.-++|+-| +-.|.+|||.+-
T Consensus 238 ~~Ave~G~~GIIVSNHGgRQlD~--vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG-Ak~VfiGRP~v~ 312 (363)
T KOG0538|consen 238 RKAVEAGVAGIIVSNHGGRQLDY--VPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG-AKGVFIGRPIVW 312 (363)
T ss_pred HHHHHhCCceEEEeCCCccccCc--ccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcc-cceEEecCchhe
Confidence 44567899999887532 22111 2223456667777774 789999999 789999999999 999999999875
No 473
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=89.84 E-value=0.45 Score=42.71 Aligned_cols=115 Identities=21% Similarity=0.320 Sum_probs=67.5
Q ss_pred HHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCChH
Q 017448 170 AIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSNPE 249 (371)
Q Consensus 170 a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~~~ 249 (371)
..++|.|-|-+|.=. ...+.++++.+|+. |- ..|+=+++.. +.
T Consensus 76 ~~~~g~~~i~~H~E~--------------------------~~~~~~~i~~ik~~-g~-k~GialnP~T---------~~ 118 (201)
T PF00834_consen 76 FAEAGADYITFHAEA--------------------------TEDPKETIKYIKEA-GI-KAGIALNPET---------PV 118 (201)
T ss_dssp HHHHT-SEEEEEGGG--------------------------TTTHHHHHHHHHHT-TS-EEEEEE-TTS----------G
T ss_pred HHhcCCCEEEEcccc--------------------------hhCHHHHHHHHHHh-CC-CEEEEEECCC---------Cc
Confidence 356799999988643 12357889999885 32 5677788742 22
Q ss_pred HHHHHHHHHHhhcCccEEEEcC--CCcccCCCCCCCCchhhH---hHHHh-----cCCCeEeeCCCCHHHHHHHHHcCCc
Q 017448 250 ALGLYMAKALNKYQILYLHILE--PRLFNAQDKLDAPPYSLL---PMRKA-----FDGTFIASGGYNRDDGNKAVAENYT 319 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~--~~~~~~~~~~~~~~~~~~---~ik~~-----~~~pVi~~Ggit~~~a~~~l~~g~~ 319 (371)
+. +. .+-+ -+|++.+.. |.+.. ........+ ++|+. .+..+.+-||++.+.+.++.+.| +
T Consensus 119 ~~---~~-~~l~-~vD~VlvMsV~PG~~G----q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~~~~~~~~aG-a 188 (201)
T PF00834_consen 119 EE---LE-PYLD-QVDMVLVMSVEPGFGG----QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINEENIKQLVEAG-A 188 (201)
T ss_dssp GG---GT-TTGC-CSSEEEEESS-TTTSS----B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSESTTTHHHHHHHT--
T ss_pred hH---HH-HHhh-hcCEEEEEEecCCCCc----ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHHHHHcC-C
Confidence 22 11 1222 388887643 22211 111112222 23332 23568889999999999999999 9
Q ss_pred cEEEechHhhhC
Q 017448 320 DLVAYGRSFLAN 331 (371)
Q Consensus 320 D~V~~gR~~lad 331 (371)
|.+..|++++..
T Consensus 189 d~~V~Gs~iF~~ 200 (201)
T PF00834_consen 189 DIFVAGSAIFKA 200 (201)
T ss_dssp -EEEESHHHHTS
T ss_pred CEEEECHHHhCC
Confidence 999999998753
No 474
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.84 E-value=15 Score=34.19 Aligned_cols=158 Identities=14% Similarity=0.145 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHhhhcC-CcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEE
Q 017448 154 EEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMK-DQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGI 232 (371)
Q Consensus 154 ~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlS-p~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~v 232 (371)
..+++|++.-.+-|+..+++|+|||-|- .|.+ |.. ++.+ .+ -...+--|+.+||+.++- |+||
T Consensus 21 ~~~~~i~e~A~~ea~~l~~~GvD~vive--------N~~d~P~~-~~~~-----p~-tva~m~~i~~~v~~~~~~-p~Gv 84 (257)
T TIGR00259 21 DNLNAVIDKAWKDAMALEEGGVDAVMFE--------NFFDAPFL-KEVD-----PE-TVAAMAVIAGQLKSDVSI-PLGI 84 (257)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEe--------cCCCCCCc-CCCC-----HH-HHHHHHHHHHHHHHhcCC-Ceee
Confidence 3588899999999999999999999762 1222 221 1111 11 244556777888888853 6777
Q ss_pred EEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCC--CCchhhHhHHHhcC--CCeEee------
Q 017448 233 RLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLD--APPYSLLPMRKAFD--GTFIAS------ 302 (371)
Q Consensus 233 rl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~--~~~~~~~~ik~~~~--~pVi~~------ 302 (371)
-+=. .+.. .++.+|. ..|.|||-+-........+.+- .+..-+-+.|+.++ +.|++.
T Consensus 85 nvL~---------nd~~-aal~iA~---a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~ 151 (257)
T TIGR00259 85 NVLR---------NDAV-AALAIAM---AVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHA 151 (257)
T ss_pred eeec---------CCCH-HHHHHHH---HhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeeccc
Confidence 4422 2222 2445554 4589999762211111110111 11122233555543 233321
Q ss_pred ---CCCCH-HHHHHHHHcCCccEEEec---hHhhhCCcHHHHHHh
Q 017448 303 ---GGYNR-DDGNKAVAENYTDLVAYG---RSFLANPDLPKRFEL 340 (371)
Q Consensus 303 ---Ggit~-~~a~~~l~~g~~D~V~~g---R~~ladP~l~~k~~~ 340 (371)
+..+. +.++.++..+.+|.|.+. .+.-.|+++.+++++
T Consensus 152 ~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~ 196 (257)
T TIGR00259 152 VHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKE 196 (257)
T ss_pred CcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHh
Confidence 22233 457788888889999764 444566677888865
No 475
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=89.83 E-value=11 Score=35.96 Aligned_cols=76 Identities=13% Similarity=-0.081 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCC-CCC----CCC----chhhHhHHHhcCCCeEeeCC--C-CH-HHHHHHH
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQ-DKL----DAP----PYSLLPMRKAFDGTFIASGG--Y-NR-DDGNKAV 314 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~-~~~----~~~----~~~~~~ik~~~~~pVi~~Gg--i-t~-~~a~~~l 314 (371)
+.+++.++++.+++.|+|+|++--..-.... +.. ..+ ...++.+|+.+++||.+==. + +. +.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 4567889999999999999987332211100 000 011 22456778888899765433 2 23 3445555
Q ss_pred HcCCccEEEe
Q 017448 315 AENYTDLVAY 324 (371)
Q Consensus 315 ~~g~~D~V~~ 324 (371)
+.| +|+|.+
T Consensus 191 ~~G-adgi~~ 199 (299)
T cd02940 191 EGG-ADGVSA 199 (299)
T ss_pred HcC-CCEEEE
Confidence 555 999985
No 476
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.74 E-value=3.8 Score=38.49 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
...+++.++|.|.|.|-... |+ -++.+..|-+.++-.+.+.+.++.+|+. |- .|.+++. .+.+ +
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~--------sd--~~~~~~~~~~~~~~~~~~~~~i~~ak~~-G~---~v~~~~~-~~~d-~ 145 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKS--------WD--LHVTEALGTTLEENLAMIRDSVAYLKSH-GR---EVIFDAE-HFFD-G 145 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcC--------CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHc-CC---eEEEeEE-eccc-c
Confidence 34566778999998875432 01 1234455666666677777777777764 32 3444432 1211 1
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHHHHcCC
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKAVAENY 318 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~l~~g~ 318 (371)
...+.+...++++.+.+.|++.|.+.... +.. .+.....+.+.+|+.++ +|+ ..... | ...+..+++.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~l-~~H~Hnd~Gla~An~laA~~aG- 220 (273)
T cd07941 146 YKANPEYALATLKAAAEAGADWLVLCDTN-GGT--LPHEIAEIVKEVRERLPGVPL-GIHAHNDSGLAVANSLAAVEAG- 220 (273)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEecCC-CCC--CHHHHHHHHHHHHHhCCCCee-EEEecCCCCcHHHHHHHHHHcC-
Confidence 12356778899999999999998875431 111 12223456778888876 553 44443 3 56778899988
Q ss_pred ccEEE-----echHhhhCCcH
Q 017448 319 TDLVA-----YGRSFLANPDL 334 (371)
Q Consensus 319 ~D~V~-----~gR~~ladP~l 334 (371)
+|.|- +|+.. .|+.+
T Consensus 221 a~~id~s~~GlGera-Gn~~~ 240 (273)
T cd07941 221 ATQVQGTINGYGERC-GNANL 240 (273)
T ss_pred CCEEEEecccccccc-ccccH
Confidence 66654 66542 44443
No 477
>PLN02535 glycolate oxidase
Probab=89.64 E-value=4.2 Score=39.95 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=35.8
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEec
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYG 325 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~g 325 (371)
.|+.++.+|+.+++||++-|-++++++..+++.| +|+|.+.
T Consensus 211 tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~G-vD~I~vs 251 (364)
T PLN02535 211 SWKDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS 251 (364)
T ss_pred CHHHHHHHHhccCCCEEEecCCCHHHHHHHHhcC-CCEEEEe
Confidence 4556788999999999998878999999999998 9999874
No 478
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=89.58 E-value=14 Score=34.52 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCC-CchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC-
Q 017448 162 DFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYG-GSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN- 239 (371)
Q Consensus 162 ~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yG-gs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~- 239 (371)
+...+|+..+++|++.+.- ..+..||--|. ..+..+ .+++++++++..|- ++...+-...+
T Consensus 60 ~i~~~A~~vk~~Ga~~lRG-------------gafKPRTSPYsFQGlge~---gL~~l~~a~~~~Gl-~vvtEvm~~~~~ 122 (286)
T COG2876 60 QVRETAESVKAAGAKALRG-------------GAFKPRTSPYSFQGLGEE---GLKLLKRAADETGL-PVVTEVMDVRDV 122 (286)
T ss_pred HHHHHHHHHHHcchhhccC-------------CcCCCCCCcccccccCHH---HHHHHHHHHHHcCC-eeEEEecCHHHH
Confidence 4567888999999988872 12557777776 222222 35666667776663 33333211000
Q ss_pred -----cC-------------------c---------CCCCChHHHHHHHHHHHhhcCccEEEEcCCC---cccCCCCCCC
Q 017448 240 -----YM-------------------E---------AQDSNPEALGLYMAKALNKYQILYLHILEPR---LFNAQDKLDA 283 (371)
Q Consensus 240 -----~~-------------------~---------~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~---~~~~~~~~~~ 283 (371)
+. + .+...+.++++.-|..+...|=.-+-+.++. +.... ...-
T Consensus 123 e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~T-RntL 201 (286)
T COG2876 123 EAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKAT-RNTL 201 (286)
T ss_pred HHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccc-ccee
Confidence 00 0 1335678888888888888886555555543 32211 2222
Q ss_pred CchhhHhHHHhcCCCeEeeCCC-C------HHHHHHHHHcCCccEEEe
Q 017448 284 PPYSLLPMRKAFDGTFIASGGY-N------RDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggi-t------~~~a~~~l~~g~~D~V~~ 324 (371)
+....-.+|+....|||+.=.. + .-.|..+++.| +|++++
T Consensus 202 Di~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaG-Adglmi 248 (286)
T COG2876 202 DISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAG-ADGLMI 248 (286)
T ss_pred chHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhcc-CCeeEE
Confidence 3445667899999999876433 1 34678899998 999998
No 479
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=89.52 E-value=6.9 Score=36.58 Aligned_cols=131 Identities=13% Similarity=0.029 Sum_probs=78.7
Q ss_pred HHHHHcC----CCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 168 RNAIKAG----FDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 168 ~~a~~aG----~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
++|.++| .|.|.|..+- |+..+++ +++-+.++-.+.+.++++.+|+. | +.|.+++.+
T Consensus 76 ~~a~~~~~~~~~~~i~i~~~~--------s~~~~~~--~~~~~~~~~~~~~~~~i~~a~~~-G---~~v~~~~~~----- 136 (268)
T cd07940 76 DAAAEALKPAKVDRIHTFIAT--------SDIHLKY--KLKKTREEVLERAVEAVEYAKSH-G---LDVEFSAED----- 136 (268)
T ss_pred HHHHHhCCCCCCCEEEEEecC--------CHHHHHH--HhCCCHHHHHHHHHHHHHHHHHc-C---CeEEEeeec-----
Confidence 4455566 9999886542 2222111 23445565566677777777664 3 234455432
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC---CCeEeeCCC-C----HHHHHHHHH
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD---GTFIASGGY-N----RDDGNKAVA 315 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~---~pVi~~Ggi-t----~~~a~~~l~ 315 (371)
....+.+....+++.+.+.|++.|.+.... +.. .+.....+++.+|+.++ +|+ ..... | ...+..+++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-G~~--~P~~v~~lv~~l~~~~~~~~i~l-~~H~Hn~~GlA~An~laAi~ 212 (268)
T cd07940 137 ATRTDLDFLIEVVEAAIEAGATTINIPDTV-GYL--TPEEFGELIKKLKENVPNIKVPI-SVHCHNDLGLAVANSLAAVE 212 (268)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCC--CHHHHHHHHHHHHHhCCCCceeE-EEEecCCcchHHHHHHHHHH
Confidence 113467778999999999999999885531 111 12223456778888886 444 33333 3 456778898
Q ss_pred cCCccEE
Q 017448 316 ENYTDLV 322 (371)
Q Consensus 316 ~g~~D~V 322 (371)
.| +|.|
T Consensus 213 aG-~~~i 218 (268)
T cd07940 213 AG-ARQV 218 (268)
T ss_pred hC-CCEE
Confidence 88 6665
No 480
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=89.41 E-value=1.2 Score=41.35 Aligned_cols=96 Identities=23% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-cCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc-cc-------
Q 017448 160 VNDFRLAGRNAIK-AGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE-RV------- 230 (371)
Q Consensus 160 i~~f~~aA~~a~~-aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~-~i------- 230 (371)
.++-++.|.|..+ +|+|+|.|-+|. ++++.|+.-+... ||
T Consensus 93 ~e~av~nA~rl~ke~GadaVKlEGg~-------------------------------~~~~~i~~l~~~GIPV~gHiGLt 141 (261)
T PF02548_consen 93 PEQAVRNAGRLMKEAGADAVKLEGGA-------------------------------EIAETIKALVDAGIPVMGHIGLT 141 (261)
T ss_dssp HHHHHHHHHHHHHTTT-SEEEEEBSG-------------------------------GGHHHHHHHHHTT--EEEEEES-
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccch-------------------------------hHHHHHHHHHHCCCcEEEEecCc
Q ss_pred --------EEEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEee
Q 017448 231 --------GIRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIAS 302 (371)
Q Consensus 231 --------~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~ 302 (371)
++|... ...+.....++-++.|+++|+-.+.+ ..--...++.|.+.+++|+|+.
T Consensus 142 PQ~~~~~GGyr~qG-------k~~~~a~~l~~~A~ale~AGaf~ivl-----------E~vp~~la~~It~~l~IPtIGI 203 (261)
T PF02548_consen 142 PQSVHQLGGYRVQG-------KTAEEAEKLLEDAKALEEAGAFAIVL-----------ECVPAELAKAITEALSIPTIGI 203 (261)
T ss_dssp GGGHHHHTSS--CS-------TSHHHHHHHHHHHHHHHHHT-SEEEE-----------ESBBHHHHHHHHHHSSS-EEEE
T ss_pred hhheeccCCceEEe-------cCHHHHHHHHHHHHHHHHcCccEEee-----------ecCHHHHHHHHHHhCCCCEEec
Q ss_pred CC
Q 017448 303 GG 304 (371)
Q Consensus 303 Gg 304 (371)
|.
T Consensus 204 Ga 205 (261)
T PF02548_consen 204 GA 205 (261)
T ss_dssp SS
T ss_pred CC
No 481
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=89.40 E-value=8.9 Score=34.91 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=69.9
Q ss_pred ChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 85 TEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 85 ~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
.++....++++.+.+|++|.++++...--|. ..+..++.+ ...
T Consensus 104 ~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~------------------------------~~~~~~~~~-------~i~ 146 (235)
T cd00958 104 EREMLEELARVAAEAHKYGLPLIAWMYPRGP------------------------------AVKNEKDPD-------LIA 146 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeccCC------------------------------cccCccCHH-------HHH
Confidence 3567788999999999999999986532110 011123332 344
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
++++.|.++|+|.|.+.. + + -.+.++.+.+.++. || .+... .
T Consensus 147 ~~~~~a~~~GaD~Ik~~~-------------~--------~--------~~~~~~~i~~~~~~-pv--v~~GG------~ 188 (235)
T cd00958 147 YAARIGAELGADIVKTKY-------------T--------G--------DAESFKEVVEGCPV-PV--VIAGG------P 188 (235)
T ss_pred HHHHHHHHHCCCEEEecC-------------C--------C--------CHHHHHHHHhcCCC-CE--EEeCC------C
Confidence 557888899999999731 0 0 14445666665532 43 23221 0
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcC
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILE 271 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~ 271 (371)
...+.+++.+.++.+.+.|++.+.+..
T Consensus 189 ~~~~~~~~l~~~~~~~~~Ga~gv~vg~ 215 (235)
T cd00958 189 KKDSEEEFLKMVYDAMEAGAAGVAVGR 215 (235)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEech
Confidence 123566778888999999999887643
No 482
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.28 E-value=5.4 Score=39.23 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=36.9
Q ss_pred CchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEe----chHhhhCC
Q 017448 284 PPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAY----GRSFLANP 332 (371)
Q Consensus 284 ~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~----gR~~ladP 332 (371)
.|+.++++++.+++||++=|-.+.++++.+++.| +|.|.+ ||.+-..|
T Consensus 216 ~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~G-vd~I~VS~HGGrq~~~~~ 267 (367)
T TIGR02708 216 SPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAG-ASGIWVTNHGGRQLDGGP 267 (367)
T ss_pred CHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcC-cCEEEECCcCccCCCCCC
Confidence 3456788999999999987655999999999998 997744 45544444
No 483
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.23 E-value=0.98 Score=45.98 Aligned_cols=66 Identities=14% Similarity=-0.005 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhc-CCCeEeeCCC-CHHHHHHHHHcCCccEEEe
Q 017448 252 GLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAF-DGTFIASGGY-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 252 ~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~Ggi-t~~~a~~~l~~g~~D~V~~ 324 (371)
..+.++.|.++|+|.|.+.... .. .....+.++.||+.+ ++|||+ |+. |.+.+..+++.| +|.|-+
T Consensus 226 ~~~ra~~Lv~aGVd~i~~D~a~-g~----~~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G-~d~i~v 293 (475)
T TIGR01303 226 VGGKAKALLDAGVDVLVIDTAH-GH----QVKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAG-ANIIKV 293 (475)
T ss_pred HHHHHHHHHHhCCCEEEEeCCC-CC----cHHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhC-CCEEEE
Confidence 4578889999999998774321 10 112345678888876 578888 544 999999999999 999863
No 484
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=89.22 E-value=12 Score=34.69 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=70.9
Q ss_pred ChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 017448 85 TEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFR 164 (371)
Q Consensus 85 ~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~ 164 (371)
.++.++.++++++.+++.|..+.+.+...++ ..+ +.+.
T Consensus 105 ~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~------------------------------~~~------------~~~~ 142 (259)
T cd07939 105 RAWVLDQLRRLVGRAKDRGLFVSVGAEDASR------------------------------ADP------------DFLI 142 (259)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEeeccCCC------------------------------CCH------------HHHH
Confidence 3566788899999999999776654432211 011 3456
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+.++++.++|.|.|-|- |-.|... +.-+.++++.+|+.++ .+|++-..- ++
T Consensus 143 ~~~~~~~~~G~~~i~l~-------------------DT~G~~~---P~~v~~lv~~l~~~~~-~~l~~H~Hn--~~---- 193 (259)
T cd07939 143 EFAEVAQEAGADRLRFA-------------------DTVGILD---PFTTYELIRRLRAATD-LPLEFHAHN--DL---- 193 (259)
T ss_pred HHHHHHHHCCCCEEEeC-------------------CCCCCCC---HHHHHHHHHHHHHhcC-CeEEEEecC--CC----
Confidence 77777888999988763 2334332 3346788999999886 345553332 11
Q ss_pred CCChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 245 DSNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
..+..-+-...++|+++|+.+-..++
T Consensus 194 -----Gla~An~laAi~aG~~~vd~s~~G~G 219 (259)
T cd07939 194 -----GLATANTLAAVRAGATHVSVTVNGLG 219 (259)
T ss_pred -----ChHHHHHHHHHHhCCCEEEEeccccc
Confidence 11222333345789999998765544
No 485
>PLN00191 enolase
Probab=89.18 E-value=2.1 Score=43.36 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHhh-cCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC--CHHHHHHHHHcCCccEEEe
Q 017448 248 PEALGLYMAKALNK-YQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY--NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 248 ~~e~~~~la~~l~~-~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi--t~~~a~~~l~~g~~D~V~~ 324 (371)
+.++.+++.+.|.+ .++.||+ .|- ...++...+.+++..++||++...+ +++++.++++.+.||.|.+
T Consensus 296 s~~e~i~~~~~L~~~y~I~~IE--DPl-------~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~i 366 (457)
T PLN00191 296 SGDELIDLYKEFVSDYPIVSIE--DPF-------DQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLL 366 (457)
T ss_pred CHHHHHHHHHHHhhcCCcEEEE--CCC-------CcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEe
Confidence 56667777777655 6777776 441 2234566777888888998877764 5999999999999999875
No 486
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.16 E-value=10 Score=34.05 Aligned_cols=132 Identities=15% Similarity=0.099 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
..-|+.|.++|+-||.+++ .+=|++||+.+.-.+||+==+- +.+.
T Consensus 36 ~~mA~Aa~~gGAvgiR~~g--------------------------------v~dIkai~~~v~vPIIGIiKrd---~~~s 80 (229)
T COG3010 36 AAMALAAEQGGAVGIRIEG--------------------------------VEDIKAIRAVVDVPIIGIIKRD---YPDS 80 (229)
T ss_pred HHHHHHHHhCCcceEeecc--------------------------------hhhHHHHHhhCCCCeEEEEecC---CCCC
Confidence 4555666789999999752 2337889998853346652221 1110
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCC-eEeeCCC-CHHHHHHHHHcCCccE
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGT-FIASGGY-NRDDGNKAVAENYTDL 321 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~p-Vi~~Ggi-t~~~a~~~l~~g~~D~ 321 (371)
... .-.+..=.+.|.+.|++.|.+....... +.. ...+.+++ .+-| .+.--.. |.+++..+.+.| +|+
T Consensus 81 ~v~--ITptlkeVd~L~~~Ga~IIA~DaT~R~R-----P~~-~~~~~i~~-~k~~~~l~MAD~St~ee~l~a~~~G-~D~ 150 (229)
T COG3010 81 PVR--ITPTLKEVDALAEAGADIIAFDATDRPR-----PDG-DLEELIAR-IKYPGQLAMADCSTFEEGLNAHKLG-FDI 150 (229)
T ss_pred Cce--ecccHHHHHHHHHCCCcEEEeecccCCC-----Ccc-hHHHHHHH-hhcCCcEEEeccCCHHHHHHHHHcC-CcE
Confidence 000 1113344567888999988874432221 111 22222222 3334 3344455 899999999998 999
Q ss_pred EEec-------hHhhhCCcH--HHHHHh
Q 017448 322 VAYG-------RSFLANPDL--PKRFEL 340 (371)
Q Consensus 322 V~~g-------R~~ladP~l--~~k~~~ 340 (371)
|+-- +....+||+ ++++.+
T Consensus 151 IGTTLsGYT~~~~~~~~pDf~lvk~l~~ 178 (229)
T COG3010 151 IGTTLSGYTGYTEKPTEPDFQLVKQLSD 178 (229)
T ss_pred EecccccccCCCCCCCCCcHHHHHHHHh
Confidence 9842 445667764 555544
No 487
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=89.08 E-value=9.3 Score=36.10 Aligned_cols=144 Identities=13% Similarity=-0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCC
Q 017448 165 LAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQ 244 (371)
Q Consensus 165 ~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~ 244 (371)
+-.++|.++|+|.|.|...- |+. +...+++-+.+.=...+.++++..|+. | +.|+++..+....-.
T Consensus 78 ~die~A~~~g~~~v~i~~s~--------S~~--~~~~~~~~t~~e~l~~~~~~v~~a~~~-g---~~v~~~~ed~~r~d~ 143 (279)
T cd07947 78 EDLKLVKEMGLKETGILMSV--------SDY--HIFKKLKMTREEAMEKYLEIVEEALDH-G---IKPRCHLEDITRADI 143 (279)
T ss_pred HHHHHHHHcCcCEEEEEEcC--------CHH--HHHHHhCcCHHHHHHHHHHHHHHHHHC-C---CeEEEEEEcccCCCc
Confidence 44567778999999875543 222 222344545554444555555555442 2 456666532111000
Q ss_pred CCChHHHHHHHHHHHhhcCcc-EEEEcCCC-cccCCC---CCCCCchhhHhHHHhcCCC--eEeeCCC-C----HHHHHH
Q 017448 245 DSNPEALGLYMAKALNKYQIL-YLHILEPR-LFNAQD---KLDAPPYSLLPMRKAFDGT--FIASGGY-N----RDDGNK 312 (371)
Q Consensus 245 ~~~~~e~~~~la~~l~~~Gvd-~l~v~~~~-~~~~~~---~~~~~~~~~~~ik~~~~~p--Vi~~Ggi-t----~~~a~~ 312 (371)
.....+...++++...++|++ -|.+.... ...|.. .+......++.+++.++.| -+..... | ...+..
T Consensus 144 ~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~la 223 (279)
T cd07947 144 YGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVA 223 (279)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHH
Confidence 011123456677777779999 68775421 111110 0011224566777776655 2444444 3 467788
Q ss_pred HHHcCCccEEE
Q 017448 313 AVAENYTDLVA 323 (371)
Q Consensus 313 ~l~~g~~D~V~ 323 (371)
+++.| ++.|-
T Consensus 224 A~~aG-~~~vd 233 (279)
T cd07947 224 AWLYG-ASWVN 233 (279)
T ss_pred HHHhC-CCEEE
Confidence 99998 77663
No 488
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=89.07 E-value=1.9 Score=38.84 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEech
Q 017448 249 EALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAYGR 326 (371)
Q Consensus 249 ~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~gR 326 (371)
.+....+++..+..|++|++|. .+.++.+.+|+..++|| ++..+.++..-.+++.| +|+|-+|-
T Consensus 26 ~~~V~~i~~AA~~ggAt~vDIA------------adp~LV~~~~~~s~lPI-CVSaVep~~f~~aV~AG-AdliEIGN 89 (242)
T PF04481_consen 26 AESVAAIVKAAEIGGATFVDIA------------ADPELVKLAKSLSNLPI-CVSAVEPELFVAAVKAG-ADLIEIGN 89 (242)
T ss_pred HHHHHHHHHHHHccCCceEEec------------CCHHHHHHHHHhCCCCe-EeecCCHHHHHHHHHhC-CCEEEecc
Confidence 4556788998999999999983 24578888998888997 44668999999999999 99999973
No 489
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.03 E-value=0.92 Score=44.54 Aligned_cols=74 Identities=8% Similarity=0.027 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-CHHHHHHHHHcCCccEE--Eech
Q 017448 250 ALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-NRDDGNKAVAENYTDLV--AYGR 326 (371)
Q Consensus 250 e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t~~~a~~~l~~g~~D~V--~~gR 326 (371)
++..+-...|.++|+|+|-+....- ....+...++.||+.++..-|..|+. |.++++.+|..| +|.+ +||-
T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG-----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aG-aDgLrVGMGs 323 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVDVVILDSSQG-----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAG-ADGLRVGMGS 323 (503)
T ss_pred cchhHHHHHhhhcCCcEEEEecCCC-----cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHcc-CceeEecccc
Confidence 3345566778999999987643210 11234567889999988664444665 999999999999 8984 4544
Q ss_pred Hhh
Q 017448 327 SFL 329 (371)
Q Consensus 327 ~~l 329 (371)
+-+
T Consensus 324 GSi 326 (503)
T KOG2550|consen 324 GSI 326 (503)
T ss_pred Cce
Confidence 433
No 490
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=89.02 E-value=4.3 Score=37.79 Aligned_cols=118 Identities=22% Similarity=0.189 Sum_probs=77.7
Q ss_pred CChhhhhchHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 017448 84 WTEEQVEAWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDF 163 (371)
Q Consensus 84 ~~~~~~~~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f 163 (371)
.+.+.++.+.++++.+|++|-++++-...-|. ...+ ++....+.+
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~------------------------------~~~~-----~~~~d~~~v 168 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRGP------------------------------AIKD-----EYHRDADLV 168 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccCC------------------------------cccc-----cccccHHHH
Confidence 34688999999999999999888865432110 0001 134445678
Q ss_pred HHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcC
Q 017448 164 RLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEA 243 (371)
Q Consensus 164 ~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~ 243 (371)
..|++.+.+.|+|.|+.+.- |+. |-.+.+-+.+| -||.++=.+
T Consensus 169 ~~aaRlaaelGADIiK~~yt---------------------g~~--------e~F~~vv~~~~-vpVviaGG~------- 211 (265)
T COG1830 169 GYAARLAAELGADIIKTKYT---------------------GDP--------ESFRRVVAACG-VPVVIAGGP------- 211 (265)
T ss_pred HHHHHHHHHhcCCeEeecCC---------------------CCh--------HHHHHHHHhCC-CCEEEeCCC-------
Confidence 99999999999999996432 221 44555556666 455553333
Q ss_pred CCCChHHHHHHHHHHHhhcCccEEEEcCCCcc
Q 017448 244 QDSNPEALGLYMAKALNKYQILYLHILEPRLF 275 (371)
Q Consensus 244 ~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~ 275 (371)
..++.++++++...+-++|...+.+ .++..
T Consensus 212 -k~~~~~~~l~~~~~ai~aGa~G~~~-GRNif 241 (265)
T COG1830 212 -KTETEREFLEMVTAAIEAGAMGVAV-GRNIF 241 (265)
T ss_pred -CCCChHHHHHHHHHHHHccCcchhh-hhhhh
Confidence 1336777888988888888776654 44443
No 491
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=89.02 E-value=3.8 Score=38.87 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=39.3
Q ss_pred chhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCccEEEe----chHhhhCC
Q 017448 285 PYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYTDLVAY----GRSFLANP 332 (371)
Q Consensus 285 ~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~D~V~~----gR~~ladP 332 (371)
|.-++++|+.++.||++-|-+|.+||..+++.| ++.|.+ ||++=.-|
T Consensus 212 W~Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G-~~GIIVSNHGgRQlD~vp 262 (363)
T KOG0538|consen 212 WKDIKWLRSITKLPIVVKGVLTGEDARKAVEAG-VAGIIVSNHGGRQLDYVP 262 (363)
T ss_pred hhhhHHHHhcCcCCeEEEeecccHHHHHHHHhC-CceEEEeCCCccccCccc
Confidence 455788999999999999988999999999999 888886 56654444
No 492
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.93 E-value=7.8 Score=36.75 Aligned_cols=154 Identities=15% Similarity=0.055 Sum_probs=81.2
Q ss_pred HHHHHHHHHc---------CCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEE
Q 017448 164 RLAGRNAIKA---------GFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRL 234 (371)
Q Consensus 164 ~~aA~~a~~a---------G~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl 234 (371)
+-+|+.++++ ||++|-+.+. -++. | .-..| +|. ..... .++.++.|..++. -||.+.+
T Consensus 19 ~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~---~~a~--s---~G~pD--~~~-~~~~e-~~~~~~~I~~a~~-~Pv~~D~ 85 (285)
T TIGR02320 19 GLSALIAEEARVEVGGESLGFDGIWSSSL---TDST--S---RGVPD--IEE-ASWTQ-RLDVVEFMFDVTT-KPIILDG 85 (285)
T ss_pred HHHHHHHHHhhhcccCcCCCcCEEEechH---HHHH--H---CCCCC--cCc-CCHHH-HHHHHHHHHhhcC-CCEEEec
Confidence 5678889999 9999997542 2231 1 12234 221 11111 2334555555552 2776655
Q ss_pred cCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccC---CCCC-----CCCchhhHhHHH---h-cCC--CeE
Q 017448 235 SPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNA---QDKL-----DAPPYSLLPMRK---A-FDG--TFI 300 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~---~~~~-----~~~~~~~~~ik~---~-~~~--pVi 300 (371)
.. + + ......+.++.++++|+..|++-.....+. .... .......+.|+. + .+. +|+
T Consensus 86 d~-------G-g-~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~Ii 156 (285)
T TIGR02320 86 DT-------G-G-NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMII 156 (285)
T ss_pred CC-------C-C-CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEE
Confidence 43 2 2 455678889999999999999955322110 0000 011123333433 3 222 343
Q ss_pred ee-----C--CC--CHHHHHHHHHcCCccEEEechHhhhCCcHHHHHHhC
Q 017448 301 AS-----G--GY--NRDDGNKAVAENYTDLVAYGRSFLANPDLPKRFELN 341 (371)
Q Consensus 301 ~~-----G--gi--t~~~a~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 341 (371)
+- . ++ ..+.++.+.+.| +|.|.+- +...+++-+.++.+.
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAG-AD~ifv~-~~~~~~~ei~~~~~~ 204 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAG-ADGIMIH-SRKKDPDEILEFARR 204 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcC-CCEEEec-CCCCCHHHHHHHHHH
Confidence 32 1 12 134567777787 9999984 234566655555443
No 493
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=88.87 E-value=5.5 Score=37.80 Aligned_cols=86 Identities=10% Similarity=-0.044 Sum_probs=48.6
Q ss_pred ccEEEEcCccCcCcCCCCChHHHHHHHHHHHhhcC--ccEEEEcCC--CcccCCCCCCCC----chhhHhHHHhcCCCeE
Q 017448 229 RVGIRLSPHANYMEAQDSNPEALGLYMAKALNKYQ--ILYLHILEP--RLFNAQDKLDAP----PYSLLPMRKAFDGTFI 300 (371)
Q Consensus 229 ~i~vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~G--vd~l~v~~~--~~~~~~~~~~~~----~~~~~~ik~~~~~pVi 300 (371)
+|.+-|.. .+.++..+.++.+++++ +|+|++-.+ ...........+ ...++.+|+.+++||.
T Consensus 92 pl~~qi~g----------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~ 161 (300)
T TIGR01037 92 PLIASVYG----------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVF 161 (300)
T ss_pred cEEEEeec----------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 67766643 24567889999998864 899887433 211100000111 2345678888888866
Q ss_pred eeCC--C-CHHHHHHHHHcCCccEEEe
Q 017448 301 ASGG--Y-NRDDGNKAVAENYTDLVAY 324 (371)
Q Consensus 301 ~~Gg--i-t~~~a~~~l~~g~~D~V~~ 324 (371)
+=-. + +..+..+.+++..+|+|.+
T Consensus 162 vKi~~~~~~~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 162 AKLSPNVTDITEIAKAAEEAGADGLTL 188 (300)
T ss_pred EECCCChhhHHHHHHHHHHcCCCEEEE
Confidence 4333 3 2233333444444999987
No 494
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=88.70 E-value=9.4 Score=34.98 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCc
Q 017448 161 NDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANY 240 (371)
Q Consensus 161 ~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~ 240 (371)
.++.+.+..+...++|.||+-.-+ .. ++ --..+++.++++...+.++.+-++...+
T Consensus 14 ~~~~e~~~~~~~~~~Di~E~RvD~------------------l~----~~-~~~~~~~~~~~e~~~~~~~IfT~R~~~E- 69 (231)
T COG0710 14 AELKEQAEKSKELDADIVELRVDL------------------LE----SN-VEVLEVAKALREKDPDKPLIFTFRTVKE- 69 (231)
T ss_pred HHHHHHHHHhhccCCCEEEEeech------------------hc----cc-chHHHHHHHHHHhccCCceEEEEeehhh-
Confidence 445677888889999999975543 22 12 2368888999998876655444443211
Q ss_pred CcCCCCChHHHHHHHHHHHhhc-CccEEEEcC
Q 017448 241 MEAQDSNPEALGLYMAKALNKY-QILYLHILE 271 (371)
Q Consensus 241 ~~~~~~~~~e~~~~la~~l~~~-Gvd~l~v~~ 271 (371)
+..+....++.+++.+.+.+. ++||+++..
T Consensus 70 -GG~~~~~~~~~i~ll~~la~~~~~d~iDiEl 100 (231)
T COG0710 70 -GGEFPGSEEEYIELLKKLAELNGPDYIDIEL 100 (231)
T ss_pred -cCCCCCCHHHHHHHHHHHHhhcCCCEEEEEc
Confidence 111233566677788777775 599999843
No 495
>PRK07534 methionine synthase I; Validated
Probab=88.65 E-value=24 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=41.5
Q ss_pred ceeeccCCCCCC---CCCCCCH-HHHHHHHHHcc-----cCceEEEccceeCCCCCCCCCCCCCCChhhhhchHHHHHHH
Q 017448 29 RIVLAPLTRNRS---YNNIPQP-HAILYYSQRTT-----NGGFLIAEATGVNDTAQGYQNTPGIWTEEQVEAWKPIVDAV 99 (371)
Q Consensus 29 Riv~apm~~~~~---~~g~~~~-~~~~~y~~~a~-----g~Glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 99 (371)
.+|.+.|..... ..|..+. ....+|..++. |+-+++.|-+ ..+...+.+++++
T Consensus 105 ~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~------------------p~l~E~~a~~~~~ 166 (336)
T PRK07534 105 VIVAGSVGPTGEIMEPMGALTHALAVEAFHEQAEGLKAGGADVLWVETI------------------SAPEEIRAAAEAA 166 (336)
T ss_pred cEEEEecCCCccccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc------------------CCHHHHHHHHHHH
Confidence 467777765433 3444444 57777777552 4556777632 1245566778888
Q ss_pred HHcCCeeEEccc
Q 017448 100 HEKGGIFFCQIW 111 (371)
Q Consensus 100 h~~g~~~~~QL~ 111 (371)
++.+.++++++.
T Consensus 167 ~~~~~Pv~vSft 178 (336)
T PRK07534 167 KLAGMPWCGTMS 178 (336)
T ss_pred HHcCCeEEEEEE
Confidence 888889998875
No 496
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=88.62 E-value=6 Score=39.54 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccC
Q 017448 160 VNDFRLAGRNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHAN 239 (371)
Q Consensus 160 i~~f~~aA~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~ 239 (371)
...-....+.+.++|.|.|.|-.+. ...+++..++.+.+.-...+.+.++..|+.- +.+++++.+.
T Consensus 75 ~~~~~~~~ea~~~a~~~~i~if~~t----------Sd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g----~~~~~~~Ed~ 140 (409)
T COG0119 75 ARAIKRDIEALLEAGVDRIHIFIAT----------SDLHLRYKLKKTREEVLERAVDAVEYARDHG----LEVRFSAEDA 140 (409)
T ss_pred HHhHHhhHHHHHhCCCCEEEEEEcC----------CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC----CeEEEEeecc
Confidence 3344456677788999998876654 3456777777787777777777777777643 5666666432
Q ss_pred cCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcC-CCeEeeCCC-C----HHHHHHH
Q 017448 240 YMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFD-GTFIASGGY-N----RDDGNKA 313 (371)
Q Consensus 240 ~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pVi~~Ggi-t----~~~a~~~ 313 (371)
. ..+.+...++++.+.++|++.|.+.... +.. .+.......+.+++.++ ...+..... + ......+
T Consensus 141 ~-----rt~~~~l~~~~~~~~~~ga~~i~l~DTv-G~~--~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaA 212 (409)
T COG0119 141 T-----RTDPEFLAEVVKAAIEAGADRINLPDTV-GVA--TPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAA 212 (409)
T ss_pred c-----cCCHHHHHHHHHHHHHcCCcEEEECCCc-Ccc--CHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHH
Confidence 2 3467788899999999899999985531 111 11223456778888876 233344433 3 3566788
Q ss_pred HHcCCccEEE
Q 017448 314 VAENYTDLVA 323 (371)
Q Consensus 314 l~~g~~D~V~ 323 (371)
++.| ||.|-
T Consensus 213 v~aG-a~~v~ 221 (409)
T COG0119 213 VEAG-ADQVE 221 (409)
T ss_pred HHcC-CcEEE
Confidence 8888 77663
No 497
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.50 E-value=8.5 Score=38.95 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCCEEecccccchHHh-hhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCC
Q 017448 149 RPLRTEEIPQIVNDFRLAGRNAIKAGFDGVEIHGANGYLID-QFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGA 227 (371)
Q Consensus 149 ~~mt~~eI~~ii~~f~~aA~~a~~aG~DgVei~~~~gyLl~-qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~ 227 (371)
..|+.++.-.|++ ...++|++-||+.+|.++-.+ .|+|+. ..|.++.+|+.++.
T Consensus 21 ~~~~t~dkl~ia~-------~Ld~~Gv~~IE~~ggatf~~~~~f~~e~------------------p~e~l~~l~~~~~~ 75 (448)
T PRK12331 21 TRMTTEEMLPILE-------KLDNAGYHSLEMWGGATFDACLRFLNED------------------PWERLRKIRKAVKK 75 (448)
T ss_pred cccCHHHHHHHHH-------HHHHcCCCEEEecCCccchhhhccCCCC------------------HHHHHHHHHHhCCC
Confidence 3577777665544 445669999999766554433 676653 47888888887653
Q ss_pred cccE--EEEcCccCcCcCCCCChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCe----Ee
Q 017448 228 ERVG--IRLSPHANYMEAQDSNPEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTF----IA 301 (371)
Q Consensus 228 ~~i~--vrl~~~~~~~~~~~~~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pV----i~ 301 (371)
..+. +|..-...+. ..+.+-...++++..+.|+|.+++...... .......++.+|+. ...+ ..
T Consensus 76 ~~l~~l~r~~N~~G~~----~~pddvv~~~v~~A~~~Gvd~irif~~lnd-----~~n~~~~v~~ak~~-G~~v~~~i~~ 145 (448)
T PRK12331 76 TKLQMLLRGQNLLGYR----NYADDVVESFVQKSVENGIDIIRIFDALND-----VRNLETAVKATKKA-GGHAQVAISY 145 (448)
T ss_pred CEEEEEeccccccccc----cCchhhHHHHHHHHHHCCCCEEEEEEecCc-----HHHHHHHHHHHHHc-CCeEEEEEEe
Confidence 3333 4432111111 112222345677778899999988653211 01111123334433 2221 12
Q ss_pred eC-CC-CH----HHHHHHHHcCCccEEEech-HhhhCC----cHHHHHHhC
Q 017448 302 SG-GY-NR----DDGNKAVAENYTDLVAYGR-SFLANP----DLPKRFELN 341 (371)
Q Consensus 302 ~G-gi-t~----~~a~~~l~~g~~D~V~~gR-~~ladP----~l~~k~~~g 341 (371)
.. -. ++ +.++++.+.| +|.|.++= .=+.+| ++++.+++.
T Consensus 146 t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~G~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 146 TTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMAGILTPYVAYELVKRIKEA 195 (448)
T ss_pred ecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 22 22 32 4567777777 77666531 123444 466666653
No 498
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.47 E-value=4 Score=38.62 Aligned_cols=90 Identities=8% Similarity=-0.020 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCC-CC--C----chhhHhHHHhcCCCeEeeCCCCHHHHHHHHHcCCc
Q 017448 247 NPEALGLYMAKALNKYQILYLHILEPRLFNAQDKL-DA--P----PYSLLPMRKAFDGTFIASGGYNRDDGNKAVAENYT 319 (371)
Q Consensus 247 ~~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~-~~--~----~~~~~~ik~~~~~pVi~~Ggit~~~a~~~l~~g~~ 319 (371)
.+.+.+++-+..+.+.|+|.|+|...+ +.+.... .. . ...++.+++.+++| +...-+.++.++++|+.| +
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeS-TrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~-ISIDT~~~~va~~AL~~G-a 111 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGES-TRPGAAEVSVEEELDRVIPVVEAIAQRFEVW-ISVDTSKPEVIRESAKAG-A 111 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEECCCHHHHHHHHHcC-C
Confidence 357778889999999999999995322 1111000 00 0 11234455555555 566777899999999998 9
Q ss_pred cEEEechHhhhCCcHHHHHHh
Q 017448 320 DLVAYGRSFLANPDLPKRFEL 340 (371)
Q Consensus 320 D~V~~gR~~ladP~l~~k~~~ 340 (371)
|+|==-.++ .||+....+++
T Consensus 112 diINDI~g~-~d~~~~~~~a~ 131 (282)
T PRK11613 112 HIINDIRSL-SEPGALEAAAE 131 (282)
T ss_pred CEEEECCCC-CCHHHHHHHHH
Confidence 998433444 58887776655
No 499
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.44 E-value=11 Score=34.64 Aligned_cols=111 Identities=21% Similarity=0.227 Sum_probs=65.8
Q ss_pred chHHHHHHHHHcCCeeEEccccCCccccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 017448 91 AWKPIVDAVHEKGGIFFCQIWHCGRVSTYGFQPNGEAPISCTSKGVTPGLGGGDWSPPRPLRTEEIPQIVNDFRLAGRNA 170 (371)
Q Consensus 91 ~~~~l~~~ih~~g~~~~~QL~h~G~~~~~~~~~~~~~~~~ps~~~~~~~~~g~~~~~~~~mt~~eI~~ii~~f~~aA~~a 170 (371)
.+|+.++.+|+||.++.. | | |--|+--.-+.|-+-.+.|
T Consensus 42 ~l~eki~la~~~~V~v~~-----G---------------------------G---------tl~E~~~~q~~~~~Yl~~~ 80 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYP-----G---------------------------G---------TLFEIAHSKGKFDEYLNEC 80 (237)
T ss_pred HHHHHHHHHHHcCCeEeC-----C---------------------------c---------cHHHHHHHhhhHHHHHHHH
Confidence 589999999999987762 1 1 1122222224555566678
Q ss_pred HHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCc---ccEEEEcCccCcCcCCCCC
Q 017448 171 IKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAE---RVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 171 ~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~---~i~vrl~~~~~~~~~~~~~ 247 (371)
++.|||.|||..|-- . =+.+.|+|+ |+.+++. |-. -++.|....+ ...
T Consensus 81 k~lGf~~IEiS~G~~--------~----------i~~~~~~rl----I~~~~~~-g~~v~~EvG~K~~~~~------~~~ 131 (237)
T TIGR03849 81 DELGFEAVEISDGSM--------E----------ISLEERCNL----IERAKDN-GFMVLSEVGKKSPEKD------SEL 131 (237)
T ss_pred HHcCCCEEEEcCCcc--------C----------CCHHHHHHH----HHHHHhC-CCeEeccccccCCccc------ccC
Confidence 899999999987651 0 112344444 3333321 111 2555543111 123
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcC
Q 017448 248 PEALGLYMAKALNKYQILYLHILE 271 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~ 271 (371)
+.++.+..++..-++|+++|-+-.
T Consensus 132 ~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 132 TPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEee
Confidence 456677788888899999997754
No 500
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=88.41 E-value=4.6 Score=41.76 Aligned_cols=135 Identities=14% Similarity=0.062 Sum_probs=84.3
Q ss_pred HHHHHcCCCEEecccccchHHhhhcCCcccCCCCCCCCchhhhhHHHHHHHHHHHHHhCCcccEEEEcCccCcCcCCCCC
Q 017448 168 RNAIKAGFDGVEIHGANGYLIDQFMKDQVNDRTDQYGGSLENRCRFALEIVEAVVNEIGAERVGIRLSPHANYMEAQDSN 247 (371)
Q Consensus 168 ~~a~~aG~DgVei~~~~gyLl~qFlSp~~N~R~D~yGgs~enR~r~~~eiv~avR~~vg~~~i~vrl~~~~~~~~~~~~~ 247 (371)
+.+.++|.+.|.|-... |+ -++.+..+-+.+.-.+.+.+.++.+|+. |. .|.+++...++. ...
T Consensus 92 e~~~~~g~~~i~i~~~~--------Sd--~h~~~~l~~s~~e~l~~~~~~v~~ak~~-G~---~v~~~~e~~~Da--~r~ 155 (524)
T PRK12344 92 QALLDAGTPVVTIFGKS--------WD--LHVTEALRTTLEENLAMIRDSVAYLKAH-GR---EVIFDAEHFFDG--YKA 155 (524)
T ss_pred HHHHhCCCCEEEEEECC--------CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHc-CC---eEEEcccccccc--ccC
Confidence 45567899998876443 12 2455666767777777777777777765 32 455665311111 123
Q ss_pred hHHHHHHHHHHHhhcCccEEEEcCCCcccCCCCCCCCchhhHhHHHhcCCCeEeeCCC-C----HHHHHHHHHcCCccEE
Q 017448 248 PEALGLYMAKALNKYQILYLHILEPRLFNAQDKLDAPPYSLLPMRKAFDGTFIASGGY-N----RDDGNKAVAENYTDLV 322 (371)
Q Consensus 248 ~~e~~~~la~~l~~~Gvd~l~v~~~~~~~~~~~~~~~~~~~~~ik~~~~~pVi~~Ggi-t----~~~a~~~l~~g~~D~V 322 (371)
+.+...++++.+.+.|++.|.+.... +.. .|......++.+++.+++||- .... + ...+..+++.| +|.|
T Consensus 156 d~~~l~~~~~~~~~~Gad~i~l~DTv-G~~--~P~~v~~li~~l~~~~~v~i~-~H~HND~GlA~ANslaAi~aG-a~~V 230 (524)
T PRK12344 156 NPEYALATLKAAAEAGADWVVLCDTN-GGT--LPHEVAEIVAEVRAAPGVPLG-IHAHNDSGCAVANSLAAVEAG-ARQV 230 (524)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEccCC-CCc--CHHHHHHHHHHHHHhcCCeEE-EEECCCCChHHHHHHHHHHhC-CCEE
Confidence 57778899999999999999875431 111 122234567788888876643 3333 2 46778889888 6766
Q ss_pred E
Q 017448 323 A 323 (371)
Q Consensus 323 ~ 323 (371)
-
T Consensus 231 d 231 (524)
T PRK12344 231 Q 231 (524)
T ss_pred E
Confidence 3
Done!