Query 017449
Match_columns 371
No_of_seqs 250 out of 585
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:40:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04577 DUF563: Protein of un 100.0 9.9E-28 2.1E-32 218.5 20.7 201 72-306 1-205 (206)
2 KOG4698 Uncharacterized conser 99.9 1.6E-25 3.4E-30 225.5 12.4 271 62-352 170-472 (475)
3 COG4421 Capsular polysaccharid 99.7 6.1E-17 1.3E-21 156.5 18.6 196 48-280 109-309 (368)
4 PRK14178 bifunctional 5,10-met 84.1 6.3 0.00014 38.6 8.9 83 176-277 143-226 (279)
5 cd05212 NAD_bind_m-THF_DH_Cycl 83.8 8 0.00017 33.9 8.7 80 177-275 20-100 (140)
6 PF02882 THF_DHG_CYH_C: Tetrah 77.9 25 0.00055 31.5 10.0 81 176-275 27-108 (160)
7 PF03358 FMN_red: NADPH-depend 63.9 22 0.00047 30.4 6.2 57 194-252 2-75 (152)
8 cd01971 Nitrogenase_VnfN_like 55.5 32 0.00069 35.4 6.7 84 207-300 173-261 (427)
9 PLN02897 tetrahydrofolate dehy 53.9 60 0.0013 32.9 8.1 81 176-275 205-286 (345)
10 PRK14190 bifunctional 5,10-met 53.5 58 0.0013 32.0 7.8 79 176-275 149-230 (284)
11 PRK14188 bifunctional 5,10-met 53.1 1E+02 0.0022 30.5 9.5 81 176-275 149-230 (296)
12 PRK14170 bifunctional 5,10-met 51.6 68 0.0015 31.6 7.9 78 177-275 149-229 (284)
13 PLN02616 tetrahydrofolate dehy 47.1 82 0.0018 32.2 7.8 81 176-275 222-303 (364)
14 PRK14169 bifunctional 5,10-met 47.1 83 0.0018 31.0 7.7 79 176-275 147-228 (282)
15 PRK14191 bifunctional 5,10-met 45.7 78 0.0017 31.2 7.3 82 176-276 148-230 (285)
16 PRK14186 bifunctional 5,10-met 44.7 97 0.0021 30.7 7.8 81 176-275 149-230 (297)
17 COG0190 FolD 5,10-methylene-te 43.5 1E+02 0.0023 30.3 7.7 78 176-274 147-227 (283)
18 PRK14182 bifunctional 5,10-met 42.9 1.1E+02 0.0024 30.1 7.9 79 176-275 148-229 (282)
19 cd01080 NAD_bind_m-THF_DH_Cycl 42.6 60 0.0013 29.2 5.6 71 194-276 46-117 (168)
20 PRK14166 bifunctional 5,10-met 42.3 1.1E+02 0.0025 30.0 7.8 79 176-275 148-229 (282)
21 PRK14174 bifunctional 5,10-met 42.0 99 0.0022 30.6 7.4 83 176-275 150-235 (295)
22 PRK14173 bifunctional 5,10-met 41.3 1.1E+02 0.0023 30.2 7.5 79 176-275 146-227 (287)
23 cd00316 Oxidoreductase_nitroge 40.5 83 0.0018 31.4 6.9 94 194-299 154-251 (399)
24 PRK14183 bifunctional 5,10-met 40.3 1.2E+02 0.0025 29.9 7.6 81 176-275 148-229 (281)
25 cd01967 Nitrogenase_MoFe_alpha 38.9 4.1E+02 0.0089 26.7 11.7 94 194-299 162-258 (406)
26 PRK14180 bifunctional 5,10-met 38.7 1.3E+02 0.0029 29.5 7.7 78 177-275 150-230 (282)
27 PRK14194 bifunctional 5,10-met 38.4 86 0.0019 31.1 6.4 81 176-275 150-231 (301)
28 PLN02516 methylenetetrahydrofo 38.4 1.3E+02 0.0028 29.8 7.7 79 177-276 159-240 (299)
29 PRK14181 bifunctional 5,10-met 38.0 1.3E+02 0.0029 29.6 7.6 83 176-275 144-229 (287)
30 PRK14168 bifunctional 5,10-met 37.7 1.4E+02 0.003 29.7 7.6 81 177-275 153-237 (297)
31 PRK14171 bifunctional 5,10-met 37.6 2.4E+02 0.0053 27.8 9.3 81 176-275 150-231 (288)
32 KOG0068 D-3-phosphoglycerate d 37.5 60 0.0013 33.0 5.1 64 192-260 229-292 (406)
33 cd02696 MurNAc-LAA N-acetylmur 37.4 89 0.0019 27.3 5.9 37 225-261 42-82 (172)
34 PRK14189 bifunctional 5,10-met 37.3 2.3E+02 0.0051 27.8 9.2 81 176-275 149-230 (285)
35 PRK14167 bifunctional 5,10-met 36.0 1.4E+02 0.003 29.6 7.4 83 176-275 148-233 (297)
36 PRK10792 bifunctional 5,10-met 35.8 3E+02 0.0065 27.1 9.7 81 176-275 150-231 (285)
37 PRK14172 bifunctional 5,10-met 35.6 2.9E+02 0.0063 27.1 9.5 81 176-275 149-230 (278)
38 PRK14177 bifunctional 5,10-met 35.3 2.9E+02 0.0063 27.2 9.5 81 176-275 150-231 (284)
39 cd01981 Pchlide_reductase_B Pc 35.0 2.1E+02 0.0046 29.3 8.9 97 194-300 164-265 (430)
40 PRK14185 bifunctional 5,10-met 34.5 1.7E+02 0.0037 28.9 7.8 83 176-275 148-233 (293)
41 PF01488 Shikimate_DH: Shikima 34.4 42 0.0009 28.7 3.1 70 194-279 38-114 (135)
42 PRK12480 D-lactate dehydrogena 34.3 46 0.001 33.1 3.9 56 205-262 237-303 (330)
43 PRK14176 bifunctional 5,10-met 33.7 3.3E+02 0.0071 26.9 9.5 82 176-276 155-237 (287)
44 PRK14175 bifunctional 5,10-met 32.0 1.1E+02 0.0023 30.3 5.8 82 176-276 149-231 (286)
45 PRK06436 glycerate dehydrogena 31.6 32 0.00069 33.9 2.2 49 205-260 212-261 (303)
46 PRK14179 bifunctional 5,10-met 30.2 1.4E+02 0.0031 29.3 6.4 81 176-275 149-230 (284)
47 PF00148 Oxidored_nitro: Nitro 30.0 1.1E+02 0.0023 30.8 5.7 94 194-298 146-243 (398)
48 cd01972 Nitrogenase_VnfE_like 29.9 1.7E+02 0.0037 30.0 7.2 96 194-299 163-265 (426)
49 COG4195 Phage-related replicat 28.9 1.5E+02 0.0033 27.6 5.9 64 194-258 38-109 (208)
50 PRK06932 glycerate dehydrogena 28.9 63 0.0014 31.9 3.8 65 195-262 227-293 (314)
51 PF01520 Amidase_3: N-acetylmu 28.7 1.2E+02 0.0027 26.4 5.3 38 224-261 40-81 (175)
52 PF00389 2-Hacid_dh: D-isomer 27.3 99 0.0021 25.9 4.3 64 210-281 9-73 (133)
53 PLN02928 oxidoreductase family 26.9 39 0.00084 34.0 1.9 54 205-262 265-318 (347)
54 PRK09739 hypothetical protein; 26.7 1.9E+02 0.0041 26.2 6.3 58 194-253 5-85 (199)
55 PRK15469 ghrA bifunctional gly 26.2 40 0.00087 33.3 1.8 53 205-261 229-281 (312)
56 PRK06487 glycerate dehydrogena 26.0 58 0.0013 32.2 2.9 62 195-261 227-290 (317)
57 PF02826 2-Hacid_dh_C: D-isome 26.0 70 0.0015 28.5 3.2 58 195-257 121-178 (178)
58 PRK15409 bifunctional glyoxyla 25.8 47 0.001 33.0 2.2 55 205-263 239-293 (323)
59 PLN03139 formate dehydrogenase 25.2 37 0.00079 34.8 1.4 55 205-263 294-348 (386)
60 PF02737 3HCDH_N: 3-hydroxyacy 24.9 1.2E+02 0.0026 27.3 4.5 62 210-281 94-156 (180)
61 PRK10319 N-acetylmuramoyl-l-al 24.7 1.3E+02 0.0029 29.5 5.1 47 225-276 99-149 (287)
62 PRK02910 light-independent pro 24.2 2.7E+02 0.0059 29.5 7.7 96 194-299 160-260 (519)
63 cd01078 NAD_bind_H4MPT_DH NADP 23.9 2.5E+02 0.0055 25.0 6.5 72 194-275 54-129 (194)
64 TIGR03567 FMN_reduc_SsuE FMN r 23.8 2E+02 0.0044 25.4 5.8 56 195-252 2-70 (171)
65 TIGR02883 spore_cwlD N-acetylm 23.6 2.2E+02 0.0047 25.8 6.0 25 237-261 71-97 (189)
66 TIGR03566 FMN_reduc_MsuE FMN r 23.5 2E+02 0.0043 25.4 5.7 57 195-252 2-73 (174)
67 PF05222 AlaDh_PNT_N: Alanine 22.5 1.1E+02 0.0023 26.5 3.6 36 243-278 60-95 (136)
68 PF03575 Peptidase_S51: Peptid 22.4 1.6E+02 0.0034 25.6 4.7 42 211-257 4-45 (154)
69 PRK07574 formate dehydrogenase 21.2 64 0.0014 33.0 2.2 57 204-264 286-342 (385)
70 PLN02306 hydroxypyruvate reduc 20.8 83 0.0018 32.2 2.9 52 205-261 275-326 (386)
71 PRK10431 N-acetylmuramoyl-l-al 20.8 1.7E+02 0.0038 30.6 5.3 68 194-261 192-275 (445)
72 PF13528 Glyco_trans_1_3: Glyc 20.7 4.2E+02 0.0091 25.1 7.7 60 211-274 206-278 (318)
No 1
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.96 E-value=9.9e-28 Score=218.54 Aligned_cols=201 Identities=24% Similarity=0.396 Sum_probs=146.4
Q ss_pred CCcchhhhhhHH-hhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcC-CCceeeeccCcccCCCCCcEEecee
Q 017449 72 ENIWHGLSAMVP-FVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFD-GEPVIERFDGINDEDGGDPVCFEKA 149 (371)
Q Consensus 72 ~N~wH~~sd~vp-f~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~-~~~~i~~~d~v~~~~~~~~vCFe~a 149 (371)
.|++|.+.|++| +..+.... ..++..++... .....+|..+.++. ++ ....+. . ..++++||+++
T Consensus 1 ~~~gH~l~d~l~~l~~~~~~~--~~~~~~~l~~~---~~~~~~~~~~~l~~-lg~~~~~i~-~------~~~~~~~~~~l 67 (206)
T PF04577_consen 1 NNFGHFLIDFLPRLWYLPQYI--PDSDIIILVPD---DFDNPPFIREILEL-LGIPENRIK-I------DSDEPVCFERL 67 (206)
T ss_pred CCCcEEHHHHHHHHHHHHHHC--CCCCeEEEEcC---CccccHHHHHHHHH-cCCCccEEE-E------cCCCeEEECEE
Confidence 378899999987 43444322 12222223221 12456888888843 33 323441 1 23689999999
Q ss_pred EEeecCCCCCChhchhhHhHHHHHHHHHHcCCCCCCCCCCCCeeEEEEEEc--CCCCcccCHHHHHHHHHhhccccCCce
Q 017449 150 VVMRHNEGGMSRERRMEVYDLMRCKARMYCNVSLDNKDDNHKAVGMTLLMR--TGPRSFTNEPAIIGIFEKECAKIDGCR 227 (371)
Q Consensus 150 iv~~~~~gg~~~~~~~~~~d~~r~~a~~~~~~~~~~~~~~~~~~rv~~i~R--~~~R~i~Ne~ev~~~l~~~~~~~~g~~ 227 (371)
++.......... .......+|..+++.++++.. .+ +|++|++| ++.|+|.|++||++.+++ ++
T Consensus 68 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~--p~i~~i~R~~~~~R~i~Ne~el~~~l~~-------~~ 132 (206)
T PF04577_consen 68 IVPSPPYSPSDF--NPSFFPALRDRIRRKLNLPPP----KR--PRILYISRRKSGSRRILNEDELLEILKK-------YG 132 (206)
T ss_pred EEeCCCccccCc--CchHHHHHHHHHHHHhCCccc----CC--CeEEEEecCCCCCCcCcCHHHHHHHHhh-------CC
Confidence 998644321111 112334777888888877642 22 38999999 678999999999988875 46
Q ss_pred EEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEeeCccccccccchhhHHHHHhhcCCccccccc
Q 017449 228 MTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKGWLKLAGVGQYVFHWIASWSGMRHQGAWR 306 (371)
Q Consensus 228 ~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl~h~~~w~ 306 (371)
|++++++++|+.||+++|++||||||+|||||+|++|||||+.||||+|+.+.. ..|..+|...|+.|+..+.
T Consensus 133 ~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~~~------~~~~~~a~~~~~~y~~v~~ 205 (206)
T PF04577_consen 133 FEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNYYN------RHYRNLAQALGIHYYAVYG 205 (206)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCCCC------HHHHHHHHHcCCeEEEEeC
Confidence 889999999999999999999999999999999999999999999999887765 3599999999998876543
No 2
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=1.6e-25 Score=225.54 Aligned_cols=271 Identities=17% Similarity=0.214 Sum_probs=176.4
Q ss_pred EEEEeccCCCCCcchhhhhh-HH-hhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcCCCceeeeccCcccCC
Q 017449 62 TFVSYNHYSYENIWHGLSAM-VP-FVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEPVIERFDGINDED 139 (371)
Q Consensus 62 tfV~~~~~~~~N~wH~~sd~-vp-f~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~~~~~i~~~d~v~~~~ 139 (371)
++|..++.=.+|.||++.|. +| |++.+. ..+++.+++ +.....+||..++.-++++ +.+++.++.+.
T Consensus 170 a~vfs~Gg~tgn~yhdf~d~~ipL~it~~~----~~~n~ev~~----li~~~~~ww~~kf~Dvv~~---lSn~~~v~~~~ 238 (475)
T KOG4698|consen 170 AIVFSTGGYTGNEYHDFNDGIIPLFITEAE----LRFNKEVQF----LITETHSWWDMKFGDVVRQ---LSNYPVVDFDA 238 (475)
T ss_pred hheeecCCcchhhHHHHHhhhhhhhcccch----hcccccEEE----EEEEcchhhhhhHHHHHHh---cCCCceEEecC
Confidence 35555664559999999996 57 666551 233343333 3566778988888765544 22222333468
Q ss_pred CCCcEEeceeEEee--cCCCCCChhch-------hhHhHHHHHHHHHH----cCCCCCCCCCCCCeeEEEEEEcCCCCcc
Q 017449 140 GGDPVCFEKAVVMR--HNEGGMSRERR-------MEVYDLMRCKARMY----CNVSLDNKDDNHKAVGMTLLMRTGPRSF 206 (371)
Q Consensus 140 ~~~~vCFe~aiv~~--~~~gg~~~~~~-------~~~~d~~r~~a~~~----~~~~~~~~~~~~~~~rv~~i~R~~~R~i 206 (371)
+.+++||+.++++. |.+-+..+... .-.|..+-..++.. .+++... ...++|+++++|.++|+|
T Consensus 239 ~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~---~~kkpri~~lsR~~~r~I 315 (475)
T KOG4698|consen 239 ELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPE---PWKKPRITILSRAGSRAI 315 (475)
T ss_pred CceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcC---hhhCCceEEEecccchhh
Confidence 99999999999994 55433332211 11222233333332 2333222 223578999999999999
Q ss_pred cCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEeeCc---cc---
Q 017449 207 TNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKG---WL--- 280 (371)
Q Consensus 207 ~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P~~---~~--- 280 (371)
+|++|+.++++. .|+++.+++.+..++..|.++.+++|||||+|||||||++|+||++.+|||.|.| |.
T Consensus 316 lne~el~~~~~~-----~gf~v~~~~~~~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~ 390 (475)
T KOG4698|consen 316 LNEDELPRMLED-----IGFEVSVLRPDRTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKL 390 (475)
T ss_pred hcchhhhHHHHh-----CCCceEEecccccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhh
Confidence 999999999987 5788999888889999999999999999999999999999999999999999987 22
Q ss_pred ---cccccch---hhHHHHHhhcCCcccccccCCCCCCCCCC---CCc--cccccccccceeecccchHHHHHHHHHHHH
Q 017449 281 ---KLAGVGQ---YVFHWIASWSGMRHQGAWRDPNGENCTYS---EDD--RRCMSIYKNGRIGYNETYFSEWARNVLNEV 349 (371)
Q Consensus 281 ---~~a~~~~---~~Y~~lA~~~Gl~h~~~w~d~~~~~c~~~---~~~--~~c~~~~k~~~v~in~~~f~~~l~~vl~~~ 349 (371)
.++.... ..|+..+..+++.|.+.-.++..++ |+. .++ ..-..++..|+|+++..+|.+.+-+.+...
T Consensus 391 a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~d-p~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 391 ARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFD-PISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred hhccccceeccccceeEEeecccceeeeccCCCceecc-cceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 1111110 1233334444444433222221111 111 122 222247778999999999988887776665
Q ss_pred HHh
Q 017449 350 KTM 352 (371)
Q Consensus 350 ~~~ 352 (371)
..+
T Consensus 470 ~~~ 472 (475)
T KOG4698|consen 470 ITQ 472 (475)
T ss_pred HHh
Confidence 544
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=6.1e-17 Score=156.47 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=132.7
Q ss_pred CccCCCceeeecCeEEEEeccCCCCCcchhhhhhHHhhhhhhccCCCCCceeEEeecCeecccCcchHHHHHHhhcCCCc
Q 017449 48 PKALPYNATLMKGLTFVSYNHYSYENIWHGLSAMVPFVAWHQKNNCELPTRWILYHWGELRLGMGPWLQTLMHATFDGEP 127 (371)
Q Consensus 48 ~~a~p~~~~~~~g~tfV~~~~~~~~N~wH~~sd~vpf~~~~~~~~~~~p~R~vl~~~Gel~~~l~~W~~~ll~a~f~~~~ 127 (371)
|...|++++.++|-..+..-. +-.|+=|.+.+++|.+.--..-+ ...+-.++ -..+.+|..+++. +++...
T Consensus 109 Rl~~~edAp~L~r~~v~~~~~-~~~~Yghflle~Lp~l~~i~~l~-i~~~~pLl------~P~~~~wqadll~-m~~~~~ 179 (368)
T COG4421 109 RLKRPEDAPRLPRGAVFKEWG-FSFEYGHFLLENLPYLWQIKSLG-ILSDPPLL------YPRLTEWQADLLF-MAGPDC 179 (368)
T ss_pred eecCCcCCCcCCCcceecccc-cccccchhHHhhhHHHHHHhhhc-ccccCccc------CCcchHHHHhHHh-hcCCCC
Confidence 455688888999887554222 23677789999998544221111 11111111 2345569988885 444435
Q ss_pred eeeeccCcccCCCCCcEEeceeEEeecCCCCCChhchhhHhHHHHHHHH-HHcCCCCCCCCCCCCeeEEEEEEcC--CCC
Q 017449 128 VIERFDGINDEDGGDPVCFEKAVVMRHNEGGMSRERRMEVYDLMRCKAR-MYCNVSLDNKDDNHKAVGMTLLMRT--GPR 204 (371)
Q Consensus 128 ~i~~~d~v~~~~~~~~vCFe~aiv~~~~~gg~~~~~~~~~~d~~r~~a~-~~~~~~~~~~~~~~~~~rv~~i~R~--~~R 204 (371)
++... ...||-..+++...+. + +..+ ++++.... .++.... .+ ..+.+|+||+ ..|
T Consensus 180 ~ii~~--------~p~V~~~~avl~~~~s----~-~~~h--a~l~~~~eR~~~~~~~----~~--~adkiYVSR~~qS~R 238 (368)
T COG4421 180 PIIAT--------APAVPLGPAVLPVSGS----P-RYTH--ALLAWKDERVIAIKGK----GK--VADKIYVSRKAQSMR 238 (368)
T ss_pred ceeec--------ccceeecccccCCCCC----c-hhhh--HHHHHHhhhhhcccCC----CC--CcceEEEechhhHHH
Confidence 56543 6778888888774332 1 1112 33332222 2222221 12 2356799996 469
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCCcEEEEEee--Cccc
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFP--KGWL 280 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P--~~~~ 280 (371)
+++||+||...+++. ++++|.+|+++..||++||++|.||+|+||+||.|.+|+++|+.||||-| .+++
T Consensus 239 ~lvnE~evE~~~q~~-------G~~IVrPEtl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~~~ 309 (368)
T COG4421 239 VLVNEEEVERLLQRS-------GLTIVRPETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTNFR 309 (368)
T ss_pred HhhCHHHHHHHHHhc-------CcEEEechhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCcch
Confidence 999999999999873 79999999999999999999999999999999999999999999999999 5555
No 4
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.08 E-value=6.3 Score=38.63 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+++++++.. + -+++++.|...+ -.-+...|.. .++.+.+....+-++. +.+.+|||+|+.=
T Consensus 143 l~~~~i~l~----G---k~V~ViGrs~~v----Grpla~lL~~-----~~atVtv~hs~t~~L~---~~~~~ADIvI~Av 203 (279)
T PRK14178 143 LHEYKISIA----G---KRAVVVGRSIDV----GRPMAALLLN-----ADATVTICHSKTENLK---AELRQADILVSAA 203 (279)
T ss_pred HHHcCCCCC----C---CEEEEECCCccc----cHHHHHHHHh-----CCCeeEEEecChhHHH---HHHhhCCEEEECC
Confidence 345677653 2 268999987521 1233344443 4567777765554444 3667999999999
Q ss_pred h-hhhhhhhccCCCcEEEEEeeC
Q 017449 256 G-AQLTNIFLMDRNSSVMEFFPK 277 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~P~ 277 (371)
| +++..-=+.+||++||.+--.
T Consensus 204 gk~~lv~~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 204 GKAGFITPDMVKPGATVIDVGIN 226 (279)
T ss_pred CcccccCHHHcCCCcEEEEeecc
Confidence 9 888777778999999998643
No 5
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=83.81 E-value=8 Score=33.89 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=53.7
Q ss_pred HHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeech
Q 017449 177 MYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHG 256 (371)
Q Consensus 177 ~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HG 256 (371)
++++++.. + -+++++.|+. ..-..+...|.+ .|..+.+....+-++.| .+.+|||+|..=|
T Consensus 20 ~~~~~~~~----g---k~v~VvGrs~----~vG~pla~lL~~-----~gatV~~~~~~t~~l~~---~v~~ADIVvsAtg 80 (140)
T cd05212 20 NKEGVRLD----G---KKVLVVGRSG----IVGAPLQCLLQR-----DGATVYSCDWKTIQLQS---KVHDADVVVVGSP 80 (140)
T ss_pred HHcCCCCC----C---CEEEEECCCc----hHHHHHHHHHHH-----CCCEEEEeCCCCcCHHH---HHhhCCEEEEecC
Confidence 44677653 2 2588898764 233455566655 46778777755556655 5779999999988
Q ss_pred hh-hhhhhccCCCcEEEEEe
Q 017449 257 AQ-LTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 257 Ag-LtN~lFm~pgs~viEi~ 275 (371)
.. +-..=|++||++|+-+-
T Consensus 81 ~~~~i~~~~ikpGa~Vidvg 100 (140)
T cd05212 81 KPEKVPTEWIKPGATVINCS 100 (140)
T ss_pred CCCccCHHHcCCCCEEEEcC
Confidence 65 34455889999999443
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=77.93 E-value=25 Score=31.52 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=48.9
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+++++++.. ++ ++++|.|.. ++. .-+...|.+ .+..+.+....+-.+.+ ...+|||+|+.-
T Consensus 27 L~~~~~~l~----Gk---~v~VvGrs~---~VG-~Pla~lL~~-----~~atVt~~h~~T~~l~~---~~~~ADIVVsa~ 87 (160)
T PF02882_consen 27 LEYYGIDLE----GK---KVVVVGRSN---IVG-KPLAMLLLN-----KGATVTICHSKTKNLQE---ITRRADIVVSAV 87 (160)
T ss_dssp HHHTT-STT----T----EEEEE-TTT---TTH-HHHHHHHHH-----TT-EEEEE-TTSSSHHH---HHTTSSEEEE-S
T ss_pred HHhcCCCCC----CC---EEEEECCcC---CCC-hHHHHHHHh-----CCCeEEeccCCCCcccc---eeeeccEEeeee
Confidence 345677653 22 589999875 222 334455655 46678777766666665 456999999998
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| ++|-..=|.+||++||-+-
T Consensus 88 G~~~~i~~~~ik~gavVIDvG 108 (160)
T PF02882_consen 88 GKPNLIKADWIKPGAVVIDVG 108 (160)
T ss_dssp SSTT-B-GGGS-TTEEEEE--
T ss_pred ccccccccccccCCcEEEecC
Confidence 8 6777778999999999774
No 7
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=63.87 E-value=22 Score=30.44 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCC--CH---------------HHHHHHhccCcEEE
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNL--TF---------------CEQVKLMSMTDILV 252 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~--s~---------------~eQv~l~~~advli 252 (371)
||++|. ...|.=.|-..+++.+.+.+.. .|.+++++++.++ ++ .+-++.+.+||.+|
T Consensus 2 kilii~-gS~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIIN-GSPRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEE-SSSSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEE-CcCCCCCHHHHHHHHHHHHHHH-cCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 567775 3346667777777777765533 3789999998764 22 23366778888665
No 8
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=55.47 E-value=32 Score=35.41 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=57.0
Q ss_pred cCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec---hhhhhhhhccCCCcEEEEE--eeCcccc
Q 017449 207 TNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH---GAQLTNIFLMDRNSSVMEF--FPKGWLK 281 (371)
Q Consensus 207 ~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H---GAgLtN~lFm~pgs~viEi--~P~~~~~ 281 (371)
-|..|+.+.|++ .|+++..+.....++ |+++-+.+|..-|.++ |..++..|.-+=|.-.+.. +|.|...
T Consensus 173 ~d~~elk~lL~~-----~Gl~v~~~~~~~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~~~ 246 (427)
T cd01971 173 GDLEEIKRVLEG-----IGLKVNILFGPESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGAKA 246 (427)
T ss_pred ccHHHHHHHHHH-----CCCeEEEEECCCCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhCCceEecCCCccCHHH
Confidence 578999999987 677777776666675 8899999998555544 4456666665556666665 6888553
Q ss_pred ccccchhhHHHHHhhcCCc
Q 017449 282 LAGVGQYVFHWIASWSGMR 300 (371)
Q Consensus 282 ~a~~~~~~Y~~lA~~~Gl~ 300 (371)
. ..++..+++..|+.
T Consensus 247 t----~~~l~~i~~~~g~~ 261 (427)
T cd01971 247 T----AEFLRQVAKFAGIE 261 (427)
T ss_pred H----HHHHHHHHHHhCCC
Confidence 1 23556666666653
No 9
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=53.85 E-value=60 Score=32.88 Aligned_cols=81 Identities=10% Similarity=0.182 Sum_probs=54.1
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|.+ ++--. +...|.+ .+..|.+....+-++. +...+|||+|..=
T Consensus 205 L~~~~i~l~----GK---~vvVIGRS~---iVGkP-la~LL~~-----~~ATVTicHs~T~nl~---~~~~~ADIvIsAv 265 (345)
T PLN02897 205 LIRSGVEIA----GK---NAVVIGRSN---IVGLP-MSLLLQR-----HDATVSTVHAFTKDPE---QITRKADIVIAAA 265 (345)
T ss_pred HHHhCCCCC----CC---EEEEECCCc---cccHH-HHHHHHH-----CCCEEEEEcCCCCCHH---HHHhhCCEEEEcc
Confidence 345677553 32 589999875 22211 2234443 3567777765555544 4678999999987
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| ++|...=|.+||++||-+=
T Consensus 266 Gkp~~v~~d~vk~GavVIDVG 286 (345)
T PLN02897 266 GIPNLVRGSWLKPGAVVIDVG 286 (345)
T ss_pred CCcCccCHHHcCCCCEEEEcc
Confidence 7 6788888899999999874
No 10
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.49 E-value=58 Score=32.02 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=52.2
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. + -++++|.|+. +|-+ ...|.+ .+..|.+....+-++. +.+.+|||+|+
T Consensus 149 L~~~~i~l~----G---k~vvViGrS~iVG~Pl------a~lL~~-----~~atVt~chs~t~~l~---~~~~~ADIvI~ 207 (284)
T PRK14190 149 LKEYNIDIS----G---KHVVVVGRSNIVGKPV------GQLLLN-----ENATVTYCHSKTKNLA---ELTKQADILIV 207 (284)
T ss_pred HHHcCCCCC----C---CEEEEECCCCccHHHH------HHHHHH-----CCCEEEEEeCCchhHH---HHHHhCCEEEE
Confidence 456777653 2 2589999875 3432 234433 3567777665444444 36789999998
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++...=|.+||++||-+-
T Consensus 208 AvG~p~~i~~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPKLITADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCCcCCHHHcCCCCEEEEee
Confidence 776 4566666779999999985
No 11
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.07 E-value=1e+02 Score=30.47 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ +|++|.|.+. --.-+...|.+ .|+.+.+....+.++.| +..+|||+|.+=
T Consensus 149 l~~~~i~~~----Gk---~V~viGrs~~----mG~PmA~~L~~-----~g~tVtv~~~rT~~l~e---~~~~ADIVIsav 209 (296)
T PRK14188 149 LRRVHGDLS----GL---NAVVIGRSNL----VGKPMAQLLLA-----ANATVTIAHSRTRDLPA---VCRRADILVAAV 209 (296)
T ss_pred HHHhCCCCC----CC---EEEEEcCCcc----hHHHHHHHHHh-----CCCEEEEECCCCCCHHH---HHhcCCEEEEec
Confidence 345676542 22 5899998752 12234444544 45677766433444543 567999999877
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +.+....|++||++||.+-
T Consensus 210 g~~~~v~~~~lk~GavVIDvG 230 (296)
T PRK14188 210 GRPEMVKGDWIKPGATVIDVG 230 (296)
T ss_pred CChhhcchheecCCCEEEEcC
Confidence 6 4577788899999999873
No 12
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.59 E-value=68 Score=31.58 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=53.1
Q ss_pred HHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEee
Q 017449 177 MYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSP 254 (371)
Q Consensus 177 ~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~ 254 (371)
.+++++.. ++ ++++|.|+. .|-+ ...|.+ .+..|.+....+-++.+ ...+|||+|+.
T Consensus 149 ~~~~i~l~----Gk---~vvVvGrS~iVGkPl------a~lL~~-----~~atVtichs~T~~l~~---~~~~ADIvI~A 207 (284)
T PRK14170 149 KSTGTQIE----GK---RAVVIGRSNIVGKPV------AQLLLN-----ENATVTIAHSRTKDLPQ---VAKEADILVVA 207 (284)
T ss_pred HHhCCCCC----CC---EEEEECCCCcchHHH------HHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEe
Confidence 46677653 22 589999875 3433 233433 34677776655555543 57799999998
Q ss_pred ch-hhhhhhhccCCCcEEEEEe
Q 017449 255 HG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 255 HG-AgLtN~lFm~pgs~viEi~ 275 (371)
=| +++..-=|..||++||-+=
T Consensus 208 vG~~~~i~~~~vk~GavVIDvG 229 (284)
T PRK14170 208 TGLAKFVKKDYIKPGAIVIDVG 229 (284)
T ss_pred cCCcCccCHHHcCCCCEEEEcc
Confidence 88 5677777889999999874
No 13
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.11 E-value=82 Score=32.16 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=54.0
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|.+ ++- .=+...|.+ .+..|.+....+-++.+ ...+|||+|..=
T Consensus 222 L~~y~i~l~----GK---~vvVIGRS~---iVG-kPLa~LL~~-----~~ATVTicHs~T~nl~~---~~r~ADIVIsAv 282 (364)
T PLN02616 222 LHRYNVEIK----GK---RAVVIGRSN---IVG-MPAALLLQR-----EDATVSIVHSRTKNPEE---ITREADIIISAV 282 (364)
T ss_pred HHHhCCCCC----CC---EEEEECCCc---ccc-HHHHHHHHH-----CCCeEEEeCCCCCCHHH---HHhhCCEEEEcC
Confidence 345677653 22 589999875 222 122334433 35677777666655554 567999999987
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++...=|.+||++||-+=
T Consensus 283 Gkp~~i~~d~vK~GAvVIDVG 303 (364)
T PLN02616 283 GQPNMVRGSWIKPGAVVIDVG 303 (364)
T ss_pred CCcCcCCHHHcCCCCEEEecc
Confidence 7 5677777889999999874
No 14
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.11 E-value=83 Score=30.95 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=53.8
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|+. .|- +...|.+ .+..|.+....+.++.+ ...+|||+|.
T Consensus 147 L~~~~i~l~----Gk---~vvViGrS~iVGkP------la~lL~~-----~~atVtichs~T~~l~~---~~~~ADIvI~ 205 (282)
T PRK14169 147 LDAYDIDVA----GK---RVVIVGRSNIVGRP------LAGLMVN-----HDATVTIAHSKTRNLKQ---LTKEADILVV 205 (282)
T ss_pred HHHhCCCCC----CC---EEEEECCCccchHH------HHHHHHH-----CCCEEEEECCCCCCHHH---HHhhCCEEEE
Confidence 346677653 22 589999875 333 2334443 35677776655555554 6679999998
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++...=|.+||++||-+=
T Consensus 206 AvG~p~~i~~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHFIGADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCccCHHHcCCCcEEEEee
Confidence 877 6777777899999999874
No 15
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.74 E-value=78 Score=31.17 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. + -++++|.|++ ++- .-+...|.+ .|+.|.+....+-.+ .+.+.+|||+|+.=
T Consensus 148 L~~~~i~l~----G---k~vvVvGrs~---~VG-~Pla~lL~~-----~gAtVtv~hs~t~~l---~~~~~~ADIvV~Av 208 (285)
T PRK14191 148 LKHYHIEIK----G---KDVVIIGASN---IVG-KPLAMLMLN-----AGASVSVCHILTKDL---SFYTQNADIVCVGV 208 (285)
T ss_pred HHHhCCCCC----C---CEEEEECCCc---hhH-HHHHHHHHH-----CCCEEEEEeCCcHHH---HHHHHhCCEEEEec
Confidence 345677653 2 2689999874 121 112233333 356777765433233 35788999999988
Q ss_pred hh-hhhhhhccCCCcEEEEEee
Q 017449 256 GA-QLTNIFLMDRNSSVMEFFP 276 (371)
Q Consensus 256 GA-gLtN~lFm~pgs~viEi~P 276 (371)
|. +|..-=|.+||++||.+--
T Consensus 209 G~p~~i~~~~vk~GavVIDvGi 230 (285)
T PRK14191 209 GKPDLIKASMVKKGAVVVDIGI 230 (285)
T ss_pred CCCCcCCHHHcCCCcEEEEeec
Confidence 74 5555556699999999853
No 16
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.68 E-value=97 Score=30.72 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|+. ++- .=+...|.+ .++.|.+....+-++.+ ...+|||+|+.=
T Consensus 149 L~~~~i~l~----Gk---~vvVIGrS~---iVG-kPla~lL~~-----~~atVtv~hs~T~~l~~---~~~~ADIvIsAv 209 (297)
T PRK14186 149 LRSQQIDIA----GK---KAVVVGRSI---LVG-KPLALMLLA-----ANATVTIAHSRTQDLAS---ITREADILVAAA 209 (297)
T ss_pred HHHhCCCCC----CC---EEEEECCCc---cch-HHHHHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEcc
Confidence 456677653 22 589999875 222 122334443 35677777655555554 667999999987
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++-..=|.+||++||-+=
T Consensus 210 Gkp~~i~~~~ik~gavVIDvG 230 (297)
T PRK14186 210 GRPNLIGAEMVKPGAVVVDVG 230 (297)
T ss_pred CCcCccCHHHcCCCCEEEEec
Confidence 7 4555555889999999874
No 17
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=43.50 E-value=1e+02 Score=30.33 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=54.6
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+++++++.. + .++++|.|++ +|-+. ..|.. .++.+.+-...+-.+. +...+|||+|.
T Consensus 147 l~~~~i~l~----G---k~~vVVGrS~iVGkPla------~lL~~-----~naTVtvcHs~T~~l~---~~~k~ADIvv~ 205 (283)
T COG0190 147 LEEYGIDLR----G---KNVVVVGRSNIVGKPLA------LLLLN-----ANATVTVCHSRTKDLA---SITKNADIVVV 205 (283)
T ss_pred HHHhCCCCC----C---CEEEEECCCCcCcHHHH------HHHHh-----CCCEEEEEcCCCCCHH---HHhhhCCEEEE
Confidence 456677653 2 2689999986 45432 33433 4567877665554443 57889999999
Q ss_pred ech-hhhhhhhccCCCcEEEEE
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEF 274 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi 274 (371)
.=| +++-..=|..||++||.+
T Consensus 206 AvG~p~~i~~d~vk~gavVIDV 227 (283)
T COG0190 206 AVGKPHFIKADMVKPGAVVIDV 227 (283)
T ss_pred ecCCccccccccccCCCEEEec
Confidence 888 577777888999999987
No 18
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.89 E-value=1.1e+02 Score=30.07 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=52.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|+. .|- +..+|.+ .+..|.+....+-.+. +...+|||+|+
T Consensus 148 l~~~~i~l~----Gk---~vvViGrS~iVGkP------la~lL~~-----~~AtVtichs~T~nl~---~~~~~ADIvI~ 206 (282)
T PRK14182 148 LDEARVDPK----GK---RALVVGRSNIVGKP------MAMMLLE-----RHATVTIAHSRTADLA---GEVGRADILVA 206 (282)
T ss_pred HHHhCCCCC----CC---EEEEECCCCcchHH------HHHHHHH-----CCCEEEEeCCCCCCHH---HHHhhCCEEEE
Confidence 346677653 32 589999875 333 2344443 3457777665554555 46679999998
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++-.-=|.+||++||-+=
T Consensus 207 AvGk~~~i~~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKAELVKGAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCcCccCHHHcCCCCEEEEee
Confidence 877 5666667889999999874
No 19
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=42.62 E-value=60 Score=29.20 Aligned_cols=71 Identities=11% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhh-hhhhhccCCCcEEE
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQ-LTNIFLMDRNSSVM 272 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAg-LtN~lFm~pgs~vi 272 (371)
++++|..... . ...+.+.|.+ .|+.+.++. -+..+..+.+++|||+|+.-|+. +-..=.++++.+||
T Consensus 46 ~vlViG~G~~---~-G~~~a~~L~~-----~g~~V~v~~---r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viI 113 (168)
T cd01080 46 KVVVVGRSNI---V-GKPLAALLLN-----RNATVTVCH---SKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVI 113 (168)
T ss_pred EEEEECCcHH---H-HHHHHHHHhh-----CCCEEEEEE---CCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEE
Confidence 5788876421 1 1224455554 355555544 23456667999999999999994 22222347788888
Q ss_pred EEee
Q 017449 273 EFFP 276 (371)
Q Consensus 273 Ei~P 276 (371)
.+--
T Consensus 114 Dla~ 117 (168)
T cd01080 114 DVGI 117 (168)
T ss_pred EccC
Confidence 8863
No 20
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.30 E-value=1.1e+02 Score=30.01 Aligned_cols=79 Identities=10% Similarity=0.182 Sum_probs=52.9
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+++++++.. ++ ++++|.|+. .|-+ ...|.+ .++.|.+....+-.+.+ ...+|||+|+
T Consensus 148 L~~y~i~l~----Gk---~vvVvGrS~iVGkPl------a~lL~~-----~~atVt~chs~T~nl~~---~~~~ADIvIs 206 (282)
T PRK14166 148 LKAYEIDLE----GK---DAVIIGASNIVGRPM------ATMLLN-----AGATVSVCHIKTKDLSL---YTRQADLIIV 206 (282)
T ss_pred HHHhCCCCC----CC---EEEEECCCCcchHHH------HHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEE
Confidence 345677653 22 589999875 3433 334433 34577766655544443 6779999999
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++..-=|.+||++||-+=
T Consensus 207 AvGkp~~i~~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNLLRSDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCccCHHHcCCCCEEEEec
Confidence 887 5677777889999999874
No 21
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.96 E-value=99 Score=30.58 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|.. +|-+. .+|.+.+ +..+..+.+....+..+.+ .+.+|||+|+
T Consensus 150 l~~y~i~l~----Gk---~vvViGrS~iVG~Pla------~lL~~~~-~~~~atVt~~hs~t~~l~~---~~~~ADIvI~ 212 (295)
T PRK14174 150 LGRYNIETK----GK---HCVVVGRSNIVGKPMA------NLMLQKL-KESNCTVTICHSATKDIPS---YTRQADILIA 212 (295)
T ss_pred HHHhCCCCC----CC---EEEEECCCCcchHHHH------HHHHhcc-ccCCCEEEEEeCCchhHHH---HHHhCCEEEE
Confidence 345677653 32 589999885 34332 2222210 0134577777666655554 5679999999
Q ss_pred echhh-hhhhhccCCCcEEEEEe
Q 017449 254 PHGAQ-LTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HGAg-LtN~lFm~pgs~viEi~ 275 (371)
.=|.. +..-=|.+||++||-+-
T Consensus 213 Avg~~~li~~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKARFITADMVKPGAVVIDVG 235 (295)
T ss_pred ecCccCccCHHHcCCCCEEEEee
Confidence 88754 22233458999999875
No 22
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.32 E-value=1.1e+02 Score=30.23 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|++ .|-+ ...|.+ .+..|.+....+-++. +...+|||+|+
T Consensus 146 L~~~~i~l~----Gk---~vvViGrS~iVGkPl------a~lL~~-----~~aTVtichs~T~~l~---~~~~~ADIvIs 204 (287)
T PRK14173 146 LKHYGIPLA----GK---EVVVVGRSNIVGKPL------AALLLR-----EDATVTLAHSKTQDLP---AVTRRADVLVV 204 (287)
T ss_pred HHHcCCCCC----CC---EEEEECCCCccHHHH------HHHHHH-----CCCEEEEeCCCCCCHH---HHHhhCCEEEE
Confidence 346777653 22 589999875 2332 233433 3457777665555555 46678999999
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++-.-=|.+||++||-+=
T Consensus 205 AvGkp~~i~~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPHLITPEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcCccCHHHcCCCCEEEEcc
Confidence 887 4566666778999999874
No 23
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=40.47 E-value=83 Score=31.40 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=62.7
Q ss_pred EEEEEEcCC-CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEee---chhhhhhhhccCCCc
Q 017449 194 GMTLLMRTG-PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSP---HGAQLTNIFLMDRNS 269 (371)
Q Consensus 194 rv~~i~R~~-~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~---HGAgLtN~lFm~pgs 269 (371)
.|-+|.-.. .. .|..|+.+.|++ .|+++..+.....|+ |+++-+.+|++.|.+ +|..++..|=-+-|.
T Consensus 154 ~vNlig~~~~~~--~d~~el~~ll~~-----~G~~v~~~~~~~~s~-~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~ 225 (399)
T cd00316 154 SVNLIGGYNLGG--GDLRELKRLLEE-----MGIRVNALFDGGTTV-EELRELGNAKLNLVLCRESGLYLARYLEEKYGI 225 (399)
T ss_pred cEEEECCCCCch--hhHHHHHHHHHH-----cCCcEEEEcCCCCCH-HHHHhhccCcEEEEecHhHHHHHHHHHHHHhCC
Confidence 355665432 11 588999999987 567776666566676 457778888887777 567677776555566
Q ss_pred EEEEEeeCccccccccchhhHHHHHhhcCC
Q 017449 270 SVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299 (371)
Q Consensus 270 ~viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl 299 (371)
-.+...|.|.... ..++..+++..|+
T Consensus 226 p~~~~~p~G~~~t----~~~l~~i~~~~g~ 251 (399)
T cd00316 226 PYILINPIGLEAT----DAFLRKLAELFGI 251 (399)
T ss_pred CeEEeCCcCHHHH----HHHHHHHHHHhCC
Confidence 6666668775431 2467778888774
No 24
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.30 E-value=1.2e+02 Score=29.93 Aligned_cols=81 Identities=6% Similarity=0.110 Sum_probs=52.2
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|+. ++.- =+...|.+ .+..|.+....+-.+. +.+.+|||+|+.=
T Consensus 148 L~~~~i~l~----Gk---~vvViGrS~---~VG~-Pla~lL~~-----~~AtVti~hs~T~~l~---~~~~~ADIvV~Av 208 (281)
T PRK14183 148 LEEYEIDVK----GK---DVCVVGASN---IVGK-PMAALLLN-----ANATVDICHIFTKDLK---AHTKKADIVIVGV 208 (281)
T ss_pred HHHcCCCCC----CC---EEEEECCCC---cchH-HHHHHHHH-----CCCEEEEeCCCCcCHH---HHHhhCCEEEEec
Confidence 456677653 22 689999875 2211 12234433 3456765543333343 5788999999988
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| ++|-..=|.+||++||.+=
T Consensus 209 Gkp~~i~~~~vk~gavvIDvG 229 (281)
T PRK14183 209 GKPNLITEDMVKEGAIVIDIG 229 (281)
T ss_pred CcccccCHHHcCCCcEEEEee
Confidence 7 5677777889999999975
No 25
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.85 E-value=4.1e+02 Score=26.71 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=60.2
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec---hhhhhhhhccCCCcE
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH---GAQLTNIFLMDRNSS 270 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H---GAgLtN~lFm~pgs~ 270 (371)
.|-||.-.. ..-|..|+.+.|++ .|+++..+.....++. +++-+.+|.+-|.++ |-.++-.|--+=|.-
T Consensus 162 ~VNiig~~~--~~~d~~el~~lL~~-----~Gi~~~~~~~~~~~~~-~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP 233 (406)
T cd01967 162 DVNIIGEYN--IGGDAWVIKPLLEE-----LGIRVNATFTGDGTVD-ELRRAHRAKLNLVHCSRSMNYLAREMEERYGIP 233 (406)
T ss_pred eEEEEeccc--cchhHHHHHHHHHH-----cCCEEEEEeCCCCCHH-HHhhCccCCEEEEEChHHHHHHHHHHHHhhCCC
Confidence 455665322 12378999999987 5777776666677775 566798888666654 444555444344555
Q ss_pred EEEEeeCccccccccchhhHHHHHhhcCC
Q 017449 271 VMEFFPKGWLKLAGVGQYVFHWIASWSGM 299 (371)
Q Consensus 271 viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl 299 (371)
++...|.|.... ..++..+++..|.
T Consensus 234 ~~~~~p~G~~~t----~~~l~~l~~~lg~ 258 (406)
T cd01967 234 YMEVNFYGFEDT----SESLRKIAKFFGD 258 (406)
T ss_pred EEEecCCcHHHH----HHHHHHHHHHhCC
Confidence 566667775532 2467778888776
No 26
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.68 E-value=1.3e+02 Score=29.53 Aligned_cols=78 Identities=8% Similarity=0.085 Sum_probs=52.3
Q ss_pred HHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEee
Q 017449 177 MYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSP 254 (371)
Q Consensus 177 ~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~ 254 (371)
.+++++.. ++ ++++|.|+. .|-+ ...|.+ .+..|.+....+-++.+ ...+|||+|+.
T Consensus 150 ~~y~i~l~----Gk---~vvViGrS~~VGkPl------a~lL~~-----~~ATVt~chs~T~dl~~---~~k~ADIvIsA 208 (282)
T PRK14180 150 REYGIKTE----GA---YAVVVGASNVVGKPV------SQLLLN-----AKATVTTCHRFTTDLKS---HTTKADILIVA 208 (282)
T ss_pred HHhCCCCC----CC---EEEEECCCCcchHHH------HHHHHH-----CCCEEEEEcCCCCCHHH---HhhhcCEEEEc
Confidence 45677653 22 589999875 3332 334433 34577776554444444 57899999998
Q ss_pred ch-hhhhhhhccCCCcEEEEEe
Q 017449 255 HG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 255 HG-AgLtN~lFm~pgs~viEi~ 275 (371)
=| +++-..=|.+||++||-+=
T Consensus 209 vGkp~~i~~~~vk~gavVIDvG 230 (282)
T PRK14180 209 VGKPNFITADMVKEGAVVIDVG 230 (282)
T ss_pred cCCcCcCCHHHcCCCcEEEEec
Confidence 87 5677777889999999974
No 27
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.43 E-value=86 Score=31.13 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=53.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ +|++|.|++ ++- .-+...|.+ .|+.+.+..-.+-++.| +..+|||+|.+=
T Consensus 150 L~~~~i~l~----Gk---~V~vIG~s~---ivG-~PmA~~L~~-----~gatVtv~~~~t~~l~e---~~~~ADIVIsav 210 (301)
T PRK14194 150 LEDTCGDLT----GK---HAVVIGRSN---IVG-KPMAALLLQ-----AHCSVTVVHSRSTDAKA---LCRQADIVVAAV 210 (301)
T ss_pred HHHhCCCCC----CC---EEEEECCCC---ccH-HHHHHHHHH-----CCCEEEEECCCCCCHHH---HHhcCCEEEEec
Confidence 345677653 22 589999864 111 223344444 46778777655555554 567899999887
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++....|++||++||.+-
T Consensus 211 g~~~~v~~~~ik~GaiVIDvg 231 (301)
T PRK14194 211 GRPRLIDADWLKPGAVVIDVG 231 (301)
T ss_pred CChhcccHhhccCCcEEEEec
Confidence 6 5677778899999999984
No 28
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=38.41 E-value=1.3e+02 Score=29.83 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEee
Q 017449 177 MYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSP 254 (371)
Q Consensus 177 ~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~ 254 (371)
.+++++.. + -++++|.|.. +|-+ ...|.+ .++.|.+....+-++.+ ...+|||+|..
T Consensus 159 ~~~~i~l~----G---k~vvVIGRS~iVGkPl------a~lL~~-----~~ATVtvchs~T~nl~~---~~~~ADIvv~A 217 (299)
T PLN02516 159 SRSGIPIK----G---KKAVVVGRSNIVGLPV------SLLLLK-----ADATVTVVHSRTPDPES---IVREADIVIAA 217 (299)
T ss_pred HHhCCCCC----C---CEEEEECCCccchHHH------HHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEc
Confidence 45677653 2 2689999875 3433 234433 35678777666555554 66799999988
Q ss_pred ch-hhhhhhhccCCCcEEEEEee
Q 017449 255 HG-AQLTNIFLMDRNSSVMEFFP 276 (371)
Q Consensus 255 HG-AgLtN~lFm~pgs~viEi~P 276 (371)
=| +++...=|..||++||-+=.
T Consensus 218 vGk~~~i~~~~vk~gavVIDvGi 240 (299)
T PLN02516 218 AGQAMMIKGDWIKPGAAVIDVGT 240 (299)
T ss_pred CCCcCccCHHHcCCCCEEEEeec
Confidence 76 45555557889999998753
No 29
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.04 E-value=1.3e+02 Score=29.59 Aligned_cols=83 Identities=11% Similarity=0.261 Sum_probs=52.0
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+++++++.. ++ ++++|.|.. .|-+ ...|.+.-+ ..+..|.+....+-++.+ ...+|||+|+
T Consensus 144 L~~~~i~l~----Gk---~vvViGrS~iVGkPl------a~lL~~~~~-~~~AtVtvchs~T~~l~~---~~~~ADIvV~ 206 (287)
T PRK14181 144 LKYYEIPLH----GR---HVAIVGRSNIVGKPL------AALLMQKHP-DTNATVTLLHSQSENLTE---ILKTADIIIA 206 (287)
T ss_pred HHHhCCCCC----CC---EEEEECCCccchHHH------HHHHHhCcC-CCCCEEEEeCCCCCCHHH---HHhhCCEEEE
Confidence 345677653 22 589999875 3432 233433100 014566665544444544 5679999998
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++...=|.+||++||-+=
T Consensus 207 AvG~p~~i~~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPLFIKEEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcCccCHHHcCCCCEEEEec
Confidence 877 5677777889999999874
No 30
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.67 E-value=1.4e+02 Score=29.68 Aligned_cols=81 Identities=11% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhh-ccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 177 MYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKE-CAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 177 ~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~-~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
.+++++.. + -++++|.|+. .|-+ ...|.++ +. .+..|.+....+-.+.+ ...+|||+|+
T Consensus 153 ~~~~i~l~----G---k~vvViGrS~iVGkPl------a~lL~~~~~~--~~atVtv~hs~T~~l~~---~~~~ADIvVs 214 (297)
T PRK14168 153 VRSGVETS----G---AEVVVVGRSNIVGKPI------ANMMTQKGPG--ANATVTIVHTRSKNLAR---HCQRADILIV 214 (297)
T ss_pred HHhCCCCC----C---CEEEEECCCCcccHHH------HHHHHhcccC--CCCEEEEecCCCcCHHH---HHhhCCEEEE
Confidence 45677653 2 2589999885 3433 2333331 00 14567766555545554 5679999998
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++...=|.+||++||-+=
T Consensus 215 AvGkp~~i~~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNLVKPEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCccCHHHcCCCCEEEecC
Confidence 766 6777778889999999974
No 31
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.62 E-value=2.4e+02 Score=27.81 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=52.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+++++++.. ++ ++++|.|++ ++- .=+...|.+ .+..|.+....+-.+.+ ...+|||+|+.=
T Consensus 150 L~~y~i~l~----GK---~vvViGrS~---iVG-kPla~lL~~-----~~ATVtichs~T~~L~~---~~~~ADIvV~Av 210 (288)
T PRK14171 150 IKKYEPNLT----GK---NVVIIGRSN---IVG-KPLSALLLK-----ENCSVTICHSKTHNLSS---ITSKADIVVAAI 210 (288)
T ss_pred HHHhCCCCC----CC---EEEEECCCC---cch-HHHHHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEcc
Confidence 345677653 32 589999875 221 123334443 34577766655555554 667899999988
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++...=|.+||++||-+=
T Consensus 211 Gkp~~i~~~~vk~GavVIDvG 231 (288)
T PRK14171 211 GSPLKLTAEYFNPESIVIDVG 231 (288)
T ss_pred CCCCccCHHHcCCCCEEEEee
Confidence 7 4566667889999999875
No 32
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=37.49 E-value=60 Score=33.04 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=47.5
Q ss_pred eeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhh
Q 017449 192 AVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLT 260 (371)
Q Consensus 192 ~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLt 260 (371)
.+||+=.+|.+ +++++++++++++ .+..|+-+.|..-|--.+.-.=+|++.-.|++.+|=++.|
T Consensus 229 GVriIN~aRGG---vVDe~ALv~Al~s--G~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT 292 (406)
T KOG0068|consen 229 GVRIINVARGG---VVDEPALVRALDS--GQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAST 292 (406)
T ss_pred CcEEEEecCCc---eechHHHHHHHhc--CcccceeeecccCCCCccchhHHHhcCCceeecCccccch
Confidence 35677777765 9999999999987 4567888888654433322234688999999999977655
No 33
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=37.38 E-value=89 Score=27.33 Aligned_cols=37 Identities=19% Similarity=0.480 Sum_probs=29.0
Q ss_pred CceEEEEEcCC--CCHHHHHHHhcc--CcEEEeechhhhhh
Q 017449 225 GCRMTVAYSNN--LTFCEQVKLMSM--TDILVSPHGAQLTN 261 (371)
Q Consensus 225 g~~~~vv~~~~--~s~~eQv~l~~~--advlig~HGAgLtN 261 (371)
|+.+.....++ .++.+.+...+. +|++|+.|-.+-.+
T Consensus 42 G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 42 GAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred CCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 66666665543 689999988885 99999999888776
No 34
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.30 E-value=2.3e+02 Score=27.85 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=52.4
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. + -++++|.|++. + -.-+...|.+ .+..|.+....+-++. +.+.+|||+|..=
T Consensus 149 L~~~~i~l~----G---k~vvViGrs~i---V-GkPla~lL~~-----~~atVt~~hs~t~~l~---~~~~~ADIVV~av 209 (285)
T PRK14189 149 LESIGIPLR----G---AHAVVIGRSNI---V-GKPMAMLLLQ-----AGATVTICHSKTRDLA---AHTRQADIVVAAV 209 (285)
T ss_pred HHHcCCCCC----C---CEEEEECCCCc---c-HHHHHHHHHH-----CCCEEEEecCCCCCHH---HHhhhCCEEEEcC
Confidence 456777653 2 25899998752 1 1233445544 3566766554443444 4677999999887
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++-+.=|++||++||-+=
T Consensus 210 G~~~~i~~~~ik~gavVIDVG 230 (285)
T PRK14189 210 GKRNVLTADMVKPGATVIDVG 230 (285)
T ss_pred CCcCccCHHHcCCCCEEEEcc
Confidence 7 4566667889999999875
No 35
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.04 E-value=1.4e+02 Score=29.64 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=52.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|+. +|-+ ...|.+.. ...+..|.+....+-++. +...+|||+|+
T Consensus 148 L~~~~i~l~----Gk---~vvViGrS~iVGkPl------a~lL~~~~-~~~~aTVtvchs~T~~l~---~~~~~ADIvIs 210 (297)
T PRK14167 148 LAAAGVDTE----GA---DVVVVGRSDIVGKPM------ANLLIQKA-DGGNATVTVCHSRTDDLA---AKTRRADIVVA 210 (297)
T ss_pred HHHhCCCCC----CC---EEEEECCCcccHHHH------HHHHhcCc-cCCCCEEEEeCCCCCCHH---HHHhhCCEEEE
Confidence 456677653 22 589999875 3432 23333310 001456766554444444 46779999999
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++...=|.+||++||-+=
T Consensus 211 AvGkp~~i~~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPELIDGSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcCccCHHHcCCCCEEEEcc
Confidence 777 6777778889999999875
No 36
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.82 E-value=3e+02 Score=27.11 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=52.4
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|.. ++. .=+...|.+ .++.|.+....+-.+. +.+.+|||+|..=
T Consensus 150 l~~~~i~l~----Gk---~vvViGrs~---iVG-~Pla~lL~~-----~~atVtv~hs~T~~l~---~~~~~ADIvi~av 210 (285)
T PRK10792 150 LERYGIDTY----GL---NAVVVGASN---IVG-RPMSLELLL-----AGCTVTVCHRFTKNLR---HHVRNADLLVVAV 210 (285)
T ss_pred HHHcCCCCC----CC---EEEEECCCc---ccH-HHHHHHHHH-----CCCeEEEEECCCCCHH---HHHhhCCEEEEcC
Confidence 445676543 22 588998875 121 223344444 3567777765444444 3677999999988
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++...=|.+||++||.+-
T Consensus 211 G~p~~v~~~~vk~gavVIDvG 231 (285)
T PRK10792 211 GKPGFIPGEWIKPGAIVIDVG 231 (285)
T ss_pred CCcccccHHHcCCCcEEEEcc
Confidence 6 5566666789999999986
No 37
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.58 E-value=2.9e+02 Score=27.11 Aligned_cols=81 Identities=14% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|+. ++. .=+...|.+ .+..|.+....+-++.+ ...+|||+|+.=
T Consensus 149 L~~~~i~l~----Gk---~vvViGrS~---~VG-kPla~lL~~-----~~AtVt~chs~T~~l~~---~~~~ADIvIsAv 209 (278)
T PRK14172 149 IKSLNIDIE----GK---EVVVIGRSN---IVG-KPVAQLLLN-----ENATVTICHSKTKNLKE---VCKKADILVVAI 209 (278)
T ss_pred HHHhCCCCC----CC---EEEEECCCc---cch-HHHHHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEcC
Confidence 346677653 22 589999875 221 122334443 35677776655555554 566899999987
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++-.-=|.+||++||-+=
T Consensus 210 Gkp~~i~~~~ik~gavVIDvG 230 (278)
T PRK14172 210 GRPKFIDEEYVKEGAIVIDVG 230 (278)
T ss_pred CCcCccCHHHcCCCcEEEEee
Confidence 7 5666666789999999973
No 38
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.30 E-value=2.9e+02 Score=27.19 Aligned_cols=81 Identities=9% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|+. ++. .=+...|.+ .+..|.+....+-.+.+ ...+|||+|+.=
T Consensus 150 l~~y~i~l~----Gk---~vvViGrS~---iVG-kPla~lL~~-----~~atVt~chs~T~~l~~---~~~~ADIvIsAv 210 (284)
T PRK14177 150 LKEYGIDVT----GK---NAVVVGRSP---ILG-KPMAMLLTE-----MNATVTLCHSKTQNLPS---IVRQADIIVGAV 210 (284)
T ss_pred HHHhCCCCC----CC---EEEEECCCC---cch-HHHHHHHHH-----CCCEEEEeCCCCCCHHH---HHhhCCEEEEeC
Confidence 346677653 22 589999875 221 122334443 35677776655555554 577999999887
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++-..=|.+||++||-+=
T Consensus 211 Gk~~~i~~~~ik~gavVIDvG 231 (284)
T PRK14177 211 GKPEFIKADWISEGAVLLDAG 231 (284)
T ss_pred CCcCccCHHHcCCCCEEEEec
Confidence 7 5666677889999999974
No 39
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.04 E-value=2.1e+02 Score=29.27 Aligned_cols=97 Identities=10% Similarity=0.144 Sum_probs=64.6
Q ss_pred EEEEEEcC--CCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec---hhhhhhhhccCCC
Q 017449 194 GMTLLMRT--GPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH---GAQLTNIFLMDRN 268 (371)
Q Consensus 194 rv~~i~R~--~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H---GAgLtN~lFm~pg 268 (371)
+|-||.-. +...--|..|+.+.|++ .|+++..+...+.++ |+++-+.+|++-|.++ |..++..|--.=|
T Consensus 164 ~VNiiG~~~~~~~~~~d~~ei~~lL~~-----~Gl~v~~~~~~~~~~-~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~G 237 (430)
T cd01981 164 SVNLIGPSSLGFHNRHDCRELKRLLHT-----LGIEVNVVIPEGASV-DDLNELPKAWFNIVPYREYGLSAALYLEEEFG 237 (430)
T ss_pred cEEEEcCCCCCCCCcchHHHHHHHHHH-----cCCeEEEEEcCCCCH-HHHHhhhhCeEEEEecHHHHHHHHHHHHHHhC
Confidence 35555433 33445678899999987 677777777777777 5577788888877765 4556666655556
Q ss_pred cEEEEEeeCccccccccchhhHHHHHhhcCCc
Q 017449 269 SSVMEFFPKGWLKLAGVGQYVFHWIASWSGMR 300 (371)
Q Consensus 269 s~viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl~ 300 (371)
.-.+...|.|.... ..++..+++..|+.
T Consensus 238 iP~~~~~p~G~~~t----~~~l~~i~~~~g~~ 265 (430)
T cd01981 238 MPSVKITPIGVVAT----ARFLREIQELLGIQ 265 (430)
T ss_pred CCeEeccCCChHHH----HHHHHHHHHHhCCc
Confidence 66677788876532 23667777777754
No 40
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.53 E-value=1.7e+02 Score=28.93 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCC--CCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEe
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTG--PRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVS 253 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~--~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig 253 (371)
+.+++++.. ++ ++++|.|.. +|-+ ...|.++- ...++.+.+....+-++.+ ...+|||+|+
T Consensus 148 L~~~~i~l~----GK---~vvViGrS~iVGkPl------a~lL~~~~-~~~~aTVtvchs~T~nl~~---~~~~ADIvIs 210 (293)
T PRK14185 148 LKRYHIETS----GK---KCVVLGRSNIVGKPM------AQLMMQKA-YPGDCTVTVCHSRSKNLKK---ECLEADIIIA 210 (293)
T ss_pred HHHhCCCCC----CC---EEEEECCCccchHHH------HHHHHcCC-CCCCCEEEEecCCCCCHHH---HHhhCCEEEE
Confidence 345677653 32 589999875 3332 23343310 0014577776655556655 5569999999
Q ss_pred ech-hhhhhhhccCCCcEEEEEe
Q 017449 254 PHG-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 254 ~HG-AgLtN~lFm~pgs~viEi~ 275 (371)
.=| +++-..=|.+||++||-+=
T Consensus 211 AvGkp~~i~~~~vk~gavVIDvG 233 (293)
T PRK14185 211 ALGQPEFVKADMVKEGAVVIDVG 233 (293)
T ss_pred ccCCcCccCHHHcCCCCEEEEec
Confidence 877 5666677889999999874
No 41
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=34.45 E-value=42 Score=28.67 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=42.2
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhh--hhccCCC---
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTN--IFLMDRN--- 268 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN--~lFm~pg--- 268 (371)
+|++++|+-.| .+++.+.+ .+..+..+.++++. +...++||+|..-++|+.. --.+.+.
T Consensus 38 ~i~i~nRt~~r----a~~l~~~~-------~~~~~~~~~~~~~~-----~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~ 101 (135)
T PF01488_consen 38 EITIVNRTPER----AEALAEEF-------GGVNIEAIPLEDLE-----EALQEADIVINATPSGMPIITEEMLKKASKK 101 (135)
T ss_dssp EEEEEESSHHH----HHHHHHHH-------TGCSEEEEEGGGHC-----HHHHTESEEEE-SSTTSTSSTHHHHTTTCHH
T ss_pred EEEEEECCHHH----HHHHHHHc-------CccccceeeHHHHH-----HHHhhCCeEEEecCCCCcccCHHHHHHHHhh
Confidence 48899976322 34444433 23456777665544 6788999999999998652 1223333
Q ss_pred -cEEEEE-eeCcc
Q 017449 269 -SSVMEF-FPKGW 279 (371)
Q Consensus 269 -s~viEi-~P~~~ 279 (371)
..|+.+ +|..-
T Consensus 102 ~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 102 LRLVIDLAVPRDI 114 (135)
T ss_dssp CSEEEES-SS-SB
T ss_pred hhceeccccCCCC
Confidence 488888 66553
No 42
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=34.26 E-value=46 Score=33.13 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCH-----------HHHHHHhccCcEEEeechhhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTF-----------CEQVKLMSMTDILVSPHGAQLTNI 262 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~-----------~eQv~l~~~advlig~HGAgLtN~ 262 (371)
.++|+++++++|++- +..|+...|.+.|...+ ..--.+...-.|+++||=||.|--
T Consensus 237 ~~vd~~aL~~aL~~g--~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~ 303 (330)
T PRK12480 237 AVINTPDLIAAVNDG--TLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDE 303 (330)
T ss_pred cccCHHHHHHHHHcC--CeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHH
Confidence 688999999999972 34566677766554311 111246777899999999988754
No 43
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.71 E-value=3.3e+02 Score=26.89 Aligned_cols=82 Identities=10% Similarity=0.120 Sum_probs=53.1
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
..+++++.. + -++++|.|.+ ++. .=+...|.+ .++.|.+....+-.+.+ ...+|||+|..=
T Consensus 155 l~~~~i~l~----G---k~vvViGrs~---iVG-kPla~lL~~-----~~atVtv~hs~T~~l~~---~~~~ADIvv~Av 215 (287)
T PRK14176 155 LEEYGVDIE----G---KNAVIVGHSN---VVG-KPMAAMLLN-----RNATVSVCHVFTDDLKK---YTLDADILVVAT 215 (287)
T ss_pred HHHcCCCCC----C---CEEEEECCCc---ccH-HHHHHHHHH-----CCCEEEEEeccCCCHHH---HHhhCCEEEEcc
Confidence 445677653 2 2588998875 221 223344544 35688877765544443 678999999754
Q ss_pred h-hhhhhhhccCCCcEEEEEee
Q 017449 256 G-AQLTNIFLMDRNSSVMEFFP 276 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~P 276 (371)
| +++...=|.+||++||.+-.
T Consensus 216 G~p~~i~~~~vk~gavVIDvGi 237 (287)
T PRK14176 216 GVKHLIKADMVKEGAVIFDVGI 237 (287)
T ss_pred CCccccCHHHcCCCcEEEEecc
Confidence 4 55666668899999999854
No 44
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.97 E-value=1.1e+02 Score=30.26 Aligned_cols=82 Identities=11% Similarity=0.218 Sum_probs=52.7
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
..+++++.. ++ ++++|.|.+ ++- .-+...|.. .++.+.+....+-.+ -+.+.+|||+|+.=
T Consensus 149 l~~~~i~l~----Gk---~vvVIGrs~---~VG-~pla~lL~~-----~gatVtv~~s~t~~l---~~~~~~ADIVIsAv 209 (286)
T PRK14175 149 LKHADIDLE----GK---NAVVIGRSH---IVG-QPVSKLLLQ-----KNASVTILHSRSKDM---ASYLKDADVIVSAV 209 (286)
T ss_pred HHHcCCCCC----CC---EEEEECCCc---hhH-HHHHHHHHH-----CCCeEEEEeCCchhH---HHHHhhCCEEEECC
Confidence 345666543 22 588998764 221 233344544 356777766543323 35788999999999
Q ss_pred hhh-hhhhhccCCCcEEEEEee
Q 017449 256 GAQ-LTNIFLMDRNSSVMEFFP 276 (371)
Q Consensus 256 GAg-LtN~lFm~pgs~viEi~P 276 (371)
|.. +..-=+.+||++||.+-.
T Consensus 210 g~p~~i~~~~vk~gavVIDvGi 231 (286)
T PRK14175 210 GKPGLVTKDVVKEGAVIIDVGN 231 (286)
T ss_pred CCCcccCHHHcCCCcEEEEcCC
Confidence 887 555556799999999864
No 45
>PRK06436 glycerate dehydrogenase; Provisional
Probab=31.62 E-value=32 Score=33.95 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=31.3
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec-hhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH-GAQLT 260 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H-GAgLt 260 (371)
.+++++++.++|++. +..++...|.+.|-++-.. ..-.|+++|| +++.|
T Consensus 212 ~~vd~~aL~~aL~~g--~i~~a~lDV~~~EP~~~~~-----~~~nviiTPHi~g~~t 261 (303)
T PRK06436 212 DVVDKNDMLNFLRNH--NDKYYLSDVWWNEPIITET-----NPDNVILSPHVAGGMS 261 (303)
T ss_pred cccCHHHHHHHHHcC--CceEEEEccCCCCCCCccC-----CCCCEEECCccccccC
Confidence 688999999999873 2244556665544332111 3457899999 65544
No 46
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.21 E-value=1.4e+02 Score=29.35 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHcCCCCCCCCCCCCeeEEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeec
Q 017449 176 RMYCNVSLDNKDDNHKAVGMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPH 255 (371)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~H 255 (371)
+.+++++.. ++ ++++|.|++ ++. .-+...|.+ .|+.+.+....+-++. +...+|||+|.+=
T Consensus 149 L~~~~i~l~----Gk---~v~vIG~S~---ivG-~Pla~lL~~-----~gatVtv~~s~t~~l~---~~~~~ADIVI~av 209 (284)
T PRK14179 149 FREYNVELE----GK---HAVVIGRSN---IVG-KPMAQLLLD-----KNATVTLTHSRTRNLA---EVARKADILVVAI 209 (284)
T ss_pred HHHhCCCCC----CC---EEEEECCCC---cCc-HHHHHHHHH-----CCCEEEEECCCCCCHH---HHHhhCCEEEEec
Confidence 345677653 22 589999865 221 123334443 3567766543333443 3667999999987
Q ss_pred h-hhhhhhhccCCCcEEEEEe
Q 017449 256 G-AQLTNIFLMDRNSSVMEFF 275 (371)
Q Consensus 256 G-AgLtN~lFm~pgs~viEi~ 275 (371)
| +++..-.|++||++||.+-
T Consensus 210 g~~~~v~~~~ik~GavVIDvg 230 (284)
T PRK14179 210 GRGHFVTKEFVKEGAVVIDVG 230 (284)
T ss_pred CccccCCHHHccCCcEEEEec
Confidence 7 5677778899999999974
No 47
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=30.03 E-value=1.1e+02 Score=30.81 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhh-hhhccCC--CcE
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLT-NIFLMDR--NSS 270 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLt-N~lFm~p--gs~ 270 (371)
.|-||.....- .-|..|+.+.|++ .|+++..+.....|+. +++-+.+|++-|.++..+.. =.=+|.. |.-
T Consensus 146 ~VNiiG~~~~~-~~d~~el~~lL~~-----~Gi~v~~~~~~~~t~~-e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 146 SVNIIGGSPLG-PGDLEELKRLLEE-----LGIEVNAVFPGGTTLE-EIRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp EEEEEEESTBT-HHHHHHHHHHHHH-----TTEEEEEEEETTBCHH-HHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred ceEEecCcCCC-cccHHHHHHHHHH-----CCCceEEEeCCCCCHH-HHHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 46777654311 2688899999987 6777777777888885 57889999999999988665 4445544 777
Q ss_pred EEE-EeeCccccccccchhhHHHHHhhcC
Q 017449 271 VME-FFPKGWLKLAGVGQYVFHWIASWSG 298 (371)
Q Consensus 271 viE-i~P~~~~~~a~~~~~~Y~~lA~~~G 298 (371)
.+. -.|.|.... ..+|+.+++..|
T Consensus 219 ~~~~~~p~G~~~t----~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEGT----DAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHHH----HHHHHHHHHHHT
T ss_pred eeeccccccHHHH----HHHHHHHHHHhC
Confidence 777 567775432 247888888887
No 48
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.87 E-value=1.7e+02 Score=30.02 Aligned_cols=96 Identities=13% Similarity=0.025 Sum_probs=61.2
Q ss_pred EEEEEEcCCC--Cc-ccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeech-hhhhhhhcc--CC
Q 017449 194 GMTLLMRTGP--RS-FTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHG-AQLTNIFLM--DR 267 (371)
Q Consensus 194 rv~~i~R~~~--R~-i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HG-AgLtN~lFm--~p 267 (371)
.|-||.-... +. --|..|+.+.|++ .|+++..+...+.++. .++-+.+|..-|.++. +|+.=.-+| .=
T Consensus 163 ~VNliG~~~~~~~~~~~d~~ei~~lL~~-----~Gi~v~~~~~~~~~~~-ei~~~~~A~lniv~~~~~g~~~a~~Lee~~ 236 (426)
T cd01972 163 SVNIIGLWGGPERTEQEDVDEFKRLLNE-----LGLRVNAIIAGGCSVE-ELERASEAAANVTLCLDLGYYLGAALEQRF 236 (426)
T ss_pred CEEEEccCCCccccccccHHHHHHHHHH-----cCCeEEEEeCCCCCHH-HHHhcccCCEEEEEChhHHHHHHHHHHHHh
Confidence 3555554321 11 3677899999987 6777777666667775 5777899998888774 444333344 44
Q ss_pred CcEEEEE-eeCccccccccchhhHHHHHhhcCC
Q 017449 268 NSSVMEF-FPKGWLKLAGVGQYVFHWIASWSGM 299 (371)
Q Consensus 268 gs~viEi-~P~~~~~~a~~~~~~Y~~lA~~~Gl 299 (371)
|.-.+++ +|.|.... ..++..+|+..|+
T Consensus 237 GiP~~~~~~P~G~~~T----~~~l~~ia~~~g~ 265 (426)
T cd01972 237 GVPEIKAPQPYGIEAT----DKWLREIAKVLGM 265 (426)
T ss_pred CCCeEecCCccCHHHH----HHHHHHHHHHhCC
Confidence 6667766 67775431 2356677777776
No 49
>COG4195 Phage-related replication protein [General function prediction only]
Probab=28.87 E-value=1.5e+02 Score=27.56 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=36.3
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhcccc--------CCceEEEEEcCCCCHHHHHHHhccCcEEEeechhh
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKI--------DGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQ 258 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~--------~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAg 258 (371)
||+|+.=.|.|-=--..|++.++.+++... ...+..+.. ....=..-++++.+.|++|++||=.
T Consensus 38 ~v~ilapHGG~IE~GvSELare~s~e~S~ylfegLk~~~ns~lHitS-~~FDEp~al~~~~~h~~vis~HGy~ 109 (208)
T COG4195 38 RVLILAPHGGGIEGGVSELAREFSDEYSGYLFEGLKSPDNSELHITS-TRFDEPRALDLVSDHDYVISLHGYA 109 (208)
T ss_pred eEEEEeccCCccCccHHHHHHHHHHHHHHHHHhhhcCCCCCcccccc-cccCcHHHHHHhccccEEEEecccc
Confidence 456666555553334678888877765311 111222111 1122223467999999999999943
No 50
>PRK06932 glycerate dehydrogenase; Provisional
Probab=28.85 E-value=63 Score=31.91 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=40.7
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHH-H-HhccCcEEEeechhhhhhh
Q 017449 195 MTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQV-K-LMSMTDILVSPHGAQLTNI 262 (371)
Q Consensus 195 v~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv-~-l~~~advlig~HGAgLtN~ 262 (371)
.+||+= +.-.++|+++++++|++ ++..|....|.+.|-++...-+ + +...-.|+++||=||.|.-
T Consensus 227 a~lIN~-aRG~~Vde~AL~~aL~~--g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e 293 (314)
T PRK06932 227 AFLINT-GRGPLVDEQALLDALEN--GKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDS 293 (314)
T ss_pred eEEEEC-CCccccCHHHHHHHHHc--CCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHH
Confidence 345542 22369999999999997 2445677777765543321111 1 1234579999999987753
No 51
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=28.67 E-value=1.2e+02 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=25.9
Q ss_pred CCceEEEEEcC--CCCHHHHHHHh--ccCcEEEeechhhhhh
Q 017449 224 DGCRMTVAYSN--NLTFCEQVKLM--SMTDILVSPHGAQLTN 261 (371)
Q Consensus 224 ~g~~~~vv~~~--~~s~~eQv~l~--~~advlig~HGAgLtN 261 (371)
.|++|...... .+++.+.++.. ..+|++|+.|-.+..+
T Consensus 40 ~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~~ 81 (175)
T PF01520_consen 40 HGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASNG 81 (175)
T ss_dssp TTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SSS
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCccC
Confidence 34444443332 46899988888 8999999999766533
No 52
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=27.28 E-value=99 Score=25.92 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=45.9
Q ss_pred HHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccC-CCcEEEEEeeCcccc
Q 017449 210 PAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMD-RNSSVMEFFPKGWLK 281 (371)
Q Consensus 210 ~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~-pgs~viEi~P~~~~~ 281 (371)
++.++.|++ ++++.+ .+..+-.+-.+.+.++|++|+-.+..++--++-. |+-.+|....-|+..
T Consensus 9 ~~~~~~l~~------~~~v~~--~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 9 DEEIERLEE------GFEVEF--CDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN 73 (133)
T ss_dssp HHHHHHHHH------TSEEEE--ESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT
T ss_pred HHHHHHHHC------CceEEE--eCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc
Confidence 556677776 234444 4577777778999999999998877676655543 888999988888754
No 53
>PLN02928 oxidoreductase family protein
Probab=26.91 E-value=39 Score=33.95 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=37.5
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNI 262 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~ 262 (371)
.++++++++++|++- +..|+.+.|.+.|-++-. =.+...-.|+|+||=||.|.-
T Consensus 265 ~lVde~AL~~AL~~g--~i~gAaLDV~~~EP~~~~--~pL~~~~nviiTPHia~~t~~ 318 (347)
T PLN02928 265 GLLDYDAVLAALESG--HLGGLAIDVAWSEPFDPD--DPILKHPNVIITPHVAGVTEY 318 (347)
T ss_pred cccCHHHHHHHHHcC--CeeEEEEccCCCCCCCCC--ChhhcCCCEEECCcCCCChHH
Confidence 699999999999972 345666777655543211 135566789999998877643
No 54
>PRK09739 hypothetical protein; Provisional
Probab=26.70 E-value=1.9e+02 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCC-----------------------HHHHHHHhccCcE
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLT-----------------------FCEQVKLMSMTDI 250 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s-----------------------~~eQv~l~~~adv 250 (371)
+|++|.=. +|.=.|-..+.+.+.+.+.. .|.+++++++.++. +.+.++.+.+||+
T Consensus 5 kiliI~~s-p~~~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 5 RIYLVWAH-PRHDSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred eEEEEEcC-CCCCCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 56777633 23323444444444333211 35678777764322 2455677888888
Q ss_pred EEe
Q 017449 251 LVS 253 (371)
Q Consensus 251 lig 253 (371)
+|=
T Consensus 83 iV~ 85 (199)
T PRK09739 83 LVF 85 (199)
T ss_pred EEE
Confidence 764
No 55
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=26.22 E-value=40 Score=33.34 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=37.4
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTN 261 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN 261 (371)
.++|+++++++|++. +..|+...|.+.|-++ ..-.+...-.|+++||=||.|.
T Consensus 229 ~vVde~aL~~aL~~g--~i~gaalDVf~~EPl~--~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 229 VHVVEDDLLAALDSG--KVKGAMLDVFSREPLP--PESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred cccCHHHHHHHHhcC--CeeeEEecCCCCCCCC--CCChhhcCCCeEECCcCCCCcC
Confidence 589999999999973 3345566665555443 2224566779999999998774
No 56
>PRK06487 glycerate dehydrogenase; Provisional
Probab=26.02 E-value=58 Score=32.17 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=39.0
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHh--ccCcEEEeechhhhhh
Q 017449 195 MTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLM--SMTDILVSPHGAQLTN 261 (371)
Q Consensus 195 v~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~--~~advlig~HGAgLtN 261 (371)
.+||+=. .-.++|+++++++|++ ++..|..+.|.+.|-++-.. .+. .--.|+++||=||.|.
T Consensus 227 a~lIN~a-RG~vVde~AL~~AL~~--g~i~gAaLDVf~~EP~~~~~--pl~~~~~pnvilTPHia~~t~ 290 (317)
T PRK06487 227 ALLINTA-RGGLVDEQALADALRS--GHLGGAATDVLSVEPPVNGN--PLLAPDIPRLIVTPHSAWGSR 290 (317)
T ss_pred eEEEECC-CccccCHHHHHHHHHc--CCeeEEEeecCCCCCCCCCC--chhhcCCCCEEECCccccCCH
Confidence 3455522 2369999999999997 24456677776655433211 122 2347999999887764
No 57
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.99 E-value=70 Score=28.55 Aligned_cols=58 Identities=22% Similarity=0.396 Sum_probs=36.1
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechh
Q 017449 195 MTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGA 257 (371)
Q Consensus 195 v~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGA 257 (371)
.+||+ .+.-.+++|++++++|++. +..|+.+.|.+.|.++ +.-.+...-.|+++||=|
T Consensus 121 a~lvN-~aRG~~vde~aL~~aL~~g--~i~ga~lDV~~~EP~~--~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 121 AVLVN-VARGELVDEDALLDALESG--KIAGAALDVFEPEPLP--ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp EEEEE-SSSGGGB-HHHHHHHHHTT--SEEEEEESS-SSSSSS--TTHHHHTSTTEEEESS-T
T ss_pred eEEEe-ccchhhhhhhHHHHHHhhc--cCceEEEECCCCCCCC--CCChHHcCCCEEEeCccC
Confidence 34555 3334799999999999973 2334555555555444 333677788899999943
No 58
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=25.77 E-value=47 Score=33.05 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=38.8
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIF 263 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~l 263 (371)
.++||++++++|++- +..|....|.+.|-++... .+...-.|+++||=||.|.-.
T Consensus 239 ~vVde~AL~~AL~~g--~i~gAaLDVf~~EP~~~~~--pL~~~~nvilTPHia~~t~e~ 293 (323)
T PRK15409 239 PVVDENALIAALQKG--EIHAAGLDVFEQEPLSVDS--PLLSLPNVVAVPHIGSATHET 293 (323)
T ss_pred cccCHHHHHHHHHcC--CeeEEEeecCCCCCCCCCc--hhhcCCCEEEcCcCCCCcHHH
Confidence 699999999999973 3456667776655443222 256677999999988776543
No 59
>PLN03139 formate dehydrogenase; Provisional
Probab=25.21 E-value=37 Score=34.82 Aligned_cols=55 Identities=16% Similarity=0.101 Sum_probs=37.7
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIF 263 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~l 263 (371)
.++|+++++++|++- +..|....|.+.|-++-..- +...-.|+++||=||.|.-.
T Consensus 294 ~iVDe~AL~~AL~sG--~l~GAaLDV~~~EPlp~d~p--L~~~pNvilTPHiag~t~~~ 348 (386)
T PLN03139 294 AIMDTQAVADACSSG--HIGGYGGDVWYPQPAPKDHP--WRYMPNHAMTPHISGTTIDA 348 (386)
T ss_pred chhhHHHHHHHHHcC--CceEEEEcCCCCCCCCCCCh--hhcCCCeEEcccccccCHHH
Confidence 699999999999873 44567777776554432222 23345899999988876543
No 60
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=24.90 E-value=1.2e+02 Score=27.30 Aligned_cols=62 Identities=13% Similarity=0.284 Sum_probs=38.5
Q ss_pred HHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhccCCC-cEEEEEeeCcccc
Q 017449 210 PAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFLMDRN-SSVMEFFPKGWLK 281 (371)
Q Consensus 210 ~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lFm~pg-s~viEi~P~~~~~ 281 (371)
.++.+.|++.|+ ++ .+-..+...+++.+-...+..-+=+||+| +|.||. ..++||+|.....
T Consensus 94 ~~~~~~l~~~~~--~~-~ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T~ 156 (180)
T PF02737_consen 94 QELFAELDEICP--PD-TILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKTS 156 (180)
T ss_dssp HHHHHHHHCCS---TT-SEEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS-
T ss_pred HHHHHHHHHHhC--CC-ceEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCCC
Confidence 566777776552 22 23334557788988888888888899999 456775 7999999976554
No 61
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=24.65 E-value=1.3e+02 Score=29.48 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=32.3
Q ss_pred CceEEEEEcC--CCCHHHHHHHhc--cCcEEEeechhhhhhhhccCCCcEEEEEee
Q 017449 225 GCRMTVAYSN--NLTFCEQVKLMS--MTDILVSPHGAQLTNIFLMDRNSSVMEFFP 276 (371)
Q Consensus 225 g~~~~vv~~~--~~s~~eQv~l~~--~advlig~HGAgLtN~lFm~pgs~viEi~P 276 (371)
|++|....-+ .+++.+-+++.+ .||++|++|-.+.++ |.+.=+|+|-
T Consensus 99 G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~ 149 (287)
T PRK10319 99 GIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFA 149 (287)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEE
Confidence 6666665543 368888888776 899999999765442 4455566663
No 62
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=24.16 E-value=2.7e+02 Score=29.49 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=62.9
Q ss_pred EEEEEEcC--CCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeech-hhhhhhhccCC--C
Q 017449 194 GMTLLMRT--GPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHG-AQLTNIFLMDR--N 268 (371)
Q Consensus 194 rv~~i~R~--~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HG-AgLtN~lFm~p--g 268 (371)
+|-||.-. +.+.--|..|+.+.|++ .|+++.++.+.+.++ ++++-+.+|++-|.+++ .|..=.-+|.. |
T Consensus 160 ~VNIiG~~~l~f~~~~D~~EikrlL~~-----~Gi~vn~v~p~g~s~-~di~~l~~A~~nivl~~~~g~~~A~~Lee~fG 233 (519)
T PRK02910 160 SVNLLGPTALGFHHRDDLTELRRLLAT-----LGIDVNVVAPLGASP-ADLKRLPAAWFNVVLYREIGESAARYLEREFG 233 (519)
T ss_pred eEEEEecCccCCCChhHHHHHHHHHHH-----cCCeEEEEeCCCCCH-HHHHhcccCcEEEEeCHHHHHHHHHHHHHHhC
Confidence 45566432 33445677888888887 678888877777776 67888999999999887 46555555542 3
Q ss_pred cEEEEEeeCccccccccchhhHHHHHhhcCC
Q 017449 269 SSVMEFFPKGWLKLAGVGQYVFHWIASWSGM 299 (371)
Q Consensus 269 s~viEi~P~~~~~~a~~~~~~Y~~lA~~~Gl 299 (371)
.-.+...|.|.... ..+-..+++..|+
T Consensus 234 iP~i~~~PiG~~~T----~~fL~~la~~~g~ 260 (519)
T PRK02910 234 QPYVKTVPIGVGAT----ARFIREVAELLNL 260 (519)
T ss_pred CcccccccccHHHH----HHHHHHHHHHhCC
Confidence 44566688875431 1244456666665
No 63
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.93 E-value=2.5e+02 Score=25.01 Aligned_cols=72 Identities=7% Similarity=0.004 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhh--h--ccCCCc
Q 017449 194 GMTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNI--F--LMDRNS 269 (371)
Q Consensus 194 rv~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~--l--Fm~pgs 269 (371)
+|++++|+. ...+++.+.+++. .+.++..++. .+..+-.+.++++|++|..=.+|..+. . ...++.
T Consensus 54 ~V~l~~R~~----~~~~~l~~~l~~~----~~~~~~~~~~--~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~ 123 (194)
T cd01078 54 RVVLVGRDL----ERAQKAADSLRAR----FGEGVGAVET--SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLA 123 (194)
T ss_pred EEEEEcCCH----HHHHHHHHHHHhh----cCCcEEEeeC--CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCcee
Confidence 467777652 2234444444432 2334444332 345554577889999999888888421 1 223466
Q ss_pred EEEEEe
Q 017449 270 SVMEFF 275 (371)
Q Consensus 270 ~viEi~ 275 (371)
+|+.+.
T Consensus 124 vv~D~~ 129 (194)
T cd01078 124 VAADVN 129 (194)
T ss_pred EEEEcc
Confidence 777753
No 64
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=23.84 E-value=2e+02 Score=25.37 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHH-------------HHHHHhccCcEEE
Q 017449 195 MTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFC-------------EQVKLMSMTDILV 252 (371)
Q Consensus 195 v~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~-------------eQv~l~~~advli 252 (371)
|++|.=. .|.=.|-..+.+.+.+.+.. .+.+++++++.++++. +-.+.+.+||.+|
T Consensus 2 il~I~gS-~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI 70 (171)
T TIGR03567 2 VLTLSGS-PSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVV 70 (171)
T ss_pred EEEEECC-CCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEE
Confidence 4555422 23334444444444433211 3567777776555442 1224556777666
No 65
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=23.65 E-value=2.2e+02 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.2
Q ss_pred CHHHHHHHhc--cCcEEEeechhhhhh
Q 017449 237 TFCEQVKLMS--MTDILVSPHGAQLTN 261 (371)
Q Consensus 237 s~~eQv~l~~--~advlig~HGAgLtN 261 (371)
++.|.+++.+ .+|++|+.|-.+..+
T Consensus 71 ~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 71 DLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred CHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 5677777666 589999999877643
No 66
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=23.48 E-value=2e+02 Score=25.42 Aligned_cols=57 Identities=14% Similarity=0.065 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcccCHHHHHHHHHhhccccCCceEEEEEcCCCC---------------HHHHHHHhccCcEEE
Q 017449 195 MTLLMRTGPRSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLT---------------FCEQVKLMSMTDILV 252 (371)
Q Consensus 195 v~~i~R~~~R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s---------------~~eQv~l~~~advli 252 (371)
|++|.=+ .|+=.|-..+++.+.+.+....|.+++++++.++. +.+-.+.+.+||.+|
T Consensus 2 Il~i~GS-~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 2 VVGVSGS-LTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred EEEEECC-CCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 4555522 23333344444444433222245677777653331 223345677777766
No 67
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=22.49 E-value=1.1e+02 Score=26.49 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=26.8
Q ss_pred HHhccCcEEEeechhhhhhhhccCCCcEEEEEeeCc
Q 017449 243 KLMSMTDILVSPHGAQLTNIFLMDRNSSVMEFFPKG 278 (371)
Q Consensus 243 ~l~~~advlig~HGAgLtN~lFm~pgs~viEi~P~~ 278 (371)
+++.+||||+++..-...-+-.|++|.++|=++.+.
T Consensus 60 ev~~~adiIl~v~~p~~~e~~~l~~g~~li~~~~~~ 95 (136)
T PF05222_consen 60 EVYSDADIILKVKPPSEEELALLKPGQTLIGFLHPA 95 (136)
T ss_dssp HHHTTSSEEEESS---GGGGGGS-TTCEEEEE--GG
T ss_pred hhcccCCEEEEECCCCHHHHhhcCCCcEEEEeeccc
Confidence 588899999999999999999999999999877554
No 68
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=22.43 E-value=1.6e+02 Score=25.60 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=23.9
Q ss_pred HHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechh
Q 017449 211 AIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGA 257 (371)
Q Consensus 211 ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGA 257 (371)
++.+++++ .|+++..++..+.+-.+-.+.+.+||+|.=.=|.
T Consensus 4 ~~~~~f~~-----~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~ 45 (154)
T PF03575_consen 4 KFRKAFRK-----LGFEVDQLDLSDRNDADILEAIREADAIFLGGGD 45 (154)
T ss_dssp HHHHHHHH-----CT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-
T ss_pred HHHHHHHH-----CCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC
Confidence 44555555 5666666666665566666777777777644443
No 69
>PRK07574 formate dehydrogenase; Provisional
Probab=21.16 E-value=64 Score=33.04 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=39.1
Q ss_pred CcccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhhhhc
Q 017449 204 RSFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTNIFL 264 (371)
Q Consensus 204 R~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN~lF 264 (371)
-.++|+++++++|++- +..|+...|.+.|-++-..- +...-.|+++||=||.|.-.+
T Consensus 286 G~iVDe~AL~~AL~sG--~i~GAaLDV~~~EPlp~d~p--L~~~pNvilTPHiag~T~e~~ 342 (385)
T PRK07574 286 GKIVDRDAVVRALESG--HLAGYAGDVWFPQPAPADHP--WRTMPRNGMTPHISGTTLSAQ 342 (385)
T ss_pred CchhhHHHHHHHHHhC--CccEEEEecCCCCCCCCCCh--HHhCCCeEECCccccCcHHHH
Confidence 3699999999999973 44567777776554432222 334457999999888775543
No 70
>PLN02306 hydroxypyruvate reductase
Probab=20.82 E-value=83 Score=32.21 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=37.4
Q ss_pred cccCHHHHHHHHHhhccccCCceEEEEEcCCCCHHHHHHHhccCcEEEeechhhhhh
Q 017449 205 SFTNEPAIIGIFEKECAKIDGCRMTVAYSNNLTFCEQVKLMSMTDILVSPHGAQLTN 261 (371)
Q Consensus 205 ~i~Ne~ev~~~l~~~~~~~~g~~~~vv~~~~~s~~eQv~l~~~advlig~HGAgLtN 261 (371)
.+++|++++++|++. +..|+.+.|.+.|-+.- + .+...-.|+++||=||.|.
T Consensus 275 ~lVDe~AL~~AL~sg--~i~gAaLDVf~~EP~~~-~--~L~~~pNVilTPHiag~T~ 326 (386)
T PLN02306 275 PVIDEVALVEHLKAN--PMFRVGLDVFEDEPYMK-P--GLADMKNAVVVPHIASASK 326 (386)
T ss_pred cccCHHHHHHHHHhC--CeeEEEEeCCCCCCCCc-c--hHhhCCCEEECCccccCcH
Confidence 699999999999872 34566677766554321 1 3566779999999887764
No 71
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=20.77 E-value=1.7e+02 Score=30.60 Aligned_cols=68 Identities=10% Similarity=-0.000 Sum_probs=42.7
Q ss_pred EEEEEEcCC------CC--cccCHHHHH----HHHHhhccccCCceEEEEEc--CCCCHHHHHHHhc--cCcEEEeechh
Q 017449 194 GMTLLMRTG------PR--SFTNEPAII----GIFEKECAKIDGCRMTVAYS--NNLTFCEQVKLMS--MTDILVSPHGA 257 (371)
Q Consensus 194 rv~~i~R~~------~R--~i~Ne~ev~----~~l~~~~~~~~g~~~~vv~~--~~~s~~eQv~l~~--~advlig~HGA 257 (371)
.+++|+=+. .. .=+-|.+|. ..|++.+.+..|+++....- ..+++.|-+++.+ +||++|++|--
T Consensus 192 ~vIvIDpGHGG~DpGA~g~~G~~EKdv~L~iA~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISIHaN 271 (445)
T PRK10431 192 VIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHAD 271 (445)
T ss_pred eEEEEeCCCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEEccC
Confidence 367888752 11 224565543 34444444445566555443 2468888888877 89999999998
Q ss_pred hhhh
Q 017449 258 QLTN 261 (371)
Q Consensus 258 gLtN 261 (371)
+..+
T Consensus 272 a~~~ 275 (445)
T PRK10431 272 AAPN 275 (445)
T ss_pred CCCC
Confidence 8765
No 72
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.72 E-value=4.2e+02 Score=25.08 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=42.3
Q ss_pred HHHHHHHhhccccCCceEEEEEcC-------C-----CCHHHHHHHhccCcEEEeechhh-hhhhhccCCCcEEEEE
Q 017449 211 AIIGIFEKECAKIDGCRMTVAYSN-------N-----LTFCEQVKLMSMTDILVSPHGAQ-LTNIFLMDRNSSVMEF 274 (371)
Q Consensus 211 ev~~~l~~~~~~~~g~~~~vv~~~-------~-----~s~~eQv~l~~~advlig~HGAg-LtN~lFm~pgs~viEi 274 (371)
++++++++ + ++..+.++-.. + .+-.+..++|+.||++||.=|-+ +..++.+..-+.+|-.
T Consensus 206 ~~~~~l~~-~---~~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~ 278 (318)
T PF13528_consen 206 DLIEALKA-L---PDYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPR 278 (318)
T ss_pred HHHHHHHh-C---CCCeEEEEcCCcccccCCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeC
Confidence 77777776 2 44566555321 1 12246678999999999999999 8899998776666544
Done!