BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017450
(371 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ME80|RSMA_PARUW Ribosomal RNA small subunit methyltransferase A OS=Protochlamydia
amoebophila (strain UWE25) GN=rsmA PE=3 SV=2
Length = 284
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 16/223 (7%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G FP+K L Q+++++ I ++ A+ VQ G++VLEIGPG GSLT +L A V+
Sbjct: 13 LNQLGIFPKKGLSQNFLIDGNIIRKIVRASDVQPGNLVLEIGPGPGSLTQAMLEVEAHVV 72
Query: 168 AIEKDQHMVGLVRE--RFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
A+EKD L RE RF + QL++ ED + + + S R AKV+AN
Sbjct: 73 AVEKD---FVLARELKRFQTPSKQLEIFCEDILMFSVEEELQS----RLRDDQKAKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPE 283
+P++++T ++ +++ +FS + +++QEE A R+ P S+Y IF+NFYS+P
Sbjct: 126 LPYHLTTPILAEMVVRRKLFSSLTVMVQEEVARRMTALPG--QSDYSSFTIFLNFYSKPR 183
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
Y F V R F+P PKVD+A+V +LK+ P + FF +
Sbjct: 184 YGFTVSRNCFYPAPKVDSAIVVLELKEP---PPNIDAQVFFKI 223
>sp|Q2RME8|RSMA_MOOTA Ribosomal RNA small subunit methyltransferase A OS=Moorella
thermoacetica (strain ATCC 39073) GN=rsmA PE=3 SV=1
Length = 288
Score = 124 bits (312), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T+ + KG PRKS GQ++++++ I ++A AA V GD V+EIGPG G+LT L
Sbjct: 10 TLALVREKGLVPRKSRGQNFLVDANIVRKIARAAEVGPGDTVVEIGPGLGALTQELAARA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V+AIE D+ + + E A D ++++ D +K + + + KVVA
Sbjct: 70 GLVIAIEIDRELFAALEETLAGRDNVRLVAGDALKVDFDRLVAGILGTGEGRLPTYKVVA 129
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR-LVEPSLRTSEYRPINIFVNFYSEP 282
N+P+ I+T ++ LL +E+VL++Q E R L P +Y +++ V +Y+EP
Sbjct: 130 NLPYYITTPILMHLLTSRFRIAELVLMVQAEVGYRMLARPG--GKDYGALSVVVQYYTEP 187
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVV 328
KVPRT F+P+P+VD+ V KL T + FF VV
Sbjct: 188 AVVLKVPRTVFYPRPEVDSLV--LKLTCRTRPVVQVEDEDFFFRVV 231
>sp|Q65PH9|RSMA_BACLD Ribosomal RNA small subunit methyltransferase A OS=Bacillus
licheniformis (strain DSM 13 / ATCC 14580) GN=rsmA PE=3
SV=1
Length = 292
Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 11/227 (4%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + LN G +KSLGQ++++++ I D++ A V E V+EIGPG G+LT L
Sbjct: 11 TKEILNKYGFSFKKSLGQNFLIDTNILDRIVDHAGVTERTGVIEIGPGIGALTEQLAKRA 70
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
V A E DQ ++ ++ + + D + V+ +D +K +R+ M F+ VVA
Sbjct: 71 KKVTAFEIDQRLLPILEDTLSPYDNVTVIHQDVLKADVRAVMDEQFQ----DCDEVMVVA 126
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
N+P+ ++T +I +LL +V++LQ+E A R+ +PS + EY ++I V FY+E
Sbjct: 127 NLPYYVTTPIIMKLLEENLPLKGIVVMLQKEVADRMAAKPS--SKEYGSLSIAVQFYTEA 184
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV-TSTKSFFSMVV 328
+ VP+T F PQP VD+AV+ L++ PAV +FF VV
Sbjct: 185 KTVMNVPKTVFVPQPNVDSAVIRLTLRKE---PAVAVQDAAFFFQVV 228
>sp|B8D0I2|RSMA_HALOH Ribosomal RNA small subunit methyltransferase A OS=Halothermothrix
orenii (strain H 168 / OCM 544 / DSM 9562) GN=rsmA PE=3
SV=1
Length = 301
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 133/246 (54%), Gaps = 9/246 (3%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K LGQ+++++ I D++ A + DIV+EIGPG GSLT ++ V A EKD+ +V
Sbjct: 24 KGLGQNFLIDQNIVDKIINTADLNNEDIVIEIGPGIGSLTQKIVPRSGRVFAFEKDKRLV 83
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
++RE F + L+V+ +D ++ + F+ R S KV+AN+P+ I+T VI
Sbjct: 84 KVLRELFNGYNHLEVIGQDVLEVDWK----HFFDSRGISDRSVKVLANLPYYITTPVIMG 139
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
LL FS +VL++Q+E A R+ + + +Y +++ V +Y E E KVP T F P+
Sbjct: 140 LLESNITFSLMVLMVQKEVADRMA-AAPGSKDYGALSVAVQYYGEVEIFHKVPPTVFIPR 198
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFVHKN 356
P+V ++++ K Y V + FF MV + Q + T +S S + + K
Sbjct: 199 PRVYSSIIKIKPHSEPVY-RVKNEGFFFKMVRA---IFQQRRKTLKNSLTKSSEIKLDKG 254
Query: 357 IILPSI 362
I+ +I
Sbjct: 255 IVTEAI 260
>sp|Q67JB9|RSMA_SYMTH Ribosomal RNA small subunit methyltransferase A OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=rsmA PE=3 SV=1
Length = 285
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 130/227 (57%), Gaps = 9/227 (3%)
Query: 103 ATIKALNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
+KAL ++ G P+ LGQ+++++ + D + +AA ++ D+VLEIGPG G+LT L
Sbjct: 7 GALKALMAQYGLRPQHRLGQNFLIDGRVLDGIVSAAGLEPTDVVLEIGPGLGTLTQRLAA 66
Query: 162 AGATVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+ +E D+ +V ++ + + D ++V+ D + + L R + AK
Sbjct: 67 KAGRVVCVELDRGLVQVLHDTVQKAYDNVEVIHGDAGRIDLH----KLLGERLAPGQKAK 122
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYS 280
VVAN+P+ I+T ++ +LL S VV+++Q+E A R+V P + Y +++ V +Y+
Sbjct: 123 VVANLPYYITTPLVMRLLEEELPLSHVVVMVQKEVADRMVSPP-GSKAYGALSVAVQYYT 181
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
EP +V R +F PQP+VD+AVV+ + ++ P ++FF +V
Sbjct: 182 EPRIVLRVSRASFMPQPEVDSAVVSLRYRERP--PVDAPPEAFFRVV 226
>sp|A8MK56|RSMA_ALKOO Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
oremlandii (strain OhILAs) GN=rsmA PE=3 SV=1
Length = 287
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 120/213 (56%), Gaps = 11/213 (5%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
KSLGQ+++++ I D + A V EGD ++E+GPG GSLT + +VLA+E D+ ++
Sbjct: 23 KSLGQNFLIDQNILDNIVDGANVSEGDCIIEVGPGIGSLTQNIAERADSVLAVEIDKTLI 82
Query: 177 GLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236
+++E + ++V+ ED +K + + F R KV+AN+P+ ++T +I +
Sbjct: 83 PILKETLGAYPNVEVINEDVLKLDLHKLIEEKFPGRN-----VKVIANLPYYVTTPIIMK 137
Query: 237 LLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQ 296
L + +++Q+E A R+ + T +Y ++I V +YS P+ KVP + F PQ
Sbjct: 138 FLEEKVPVKSLTIMIQKEVADRM-QAGPGTKDYGALSIAVQYYSNPKILLKVPPSVFIPQ 196
Query: 297 PKVDAAVVTFKLKQATDYPAVTSTKS--FFSMV 327
PKV++ V+ + D P V+ + FFS+V
Sbjct: 197 PKVESTVIRLDI---LDTPKVSVEREDLFFSLV 226
>sp|Q181C1|RSMA_CLOD6 Ribosomal RNA small subunit methyltransferase A OS=Clostridium
difficile (strain 630) GN=rsmA PE=3 SV=1
Length = 289
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 128/228 (56%), Gaps = 10/228 (4%)
Query: 102 HATIKALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLL 160
H K + K F KSLGQ+++++S I D++ + A + GD ++E+GPG G+LT +
Sbjct: 7 HNATKEVVQKYNFKFSKSLGQNFLIDSNIIDKILSGARITRGDNIIEVGPGIGTLTREMG 66
Query: 161 NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220
V+AIE D++++ ++++ + +D +V+ +D +K I+ + + K + G K
Sbjct: 67 KIAEKVVAIEIDRNLIPILKDTLSDLDNTEVVNQDILKVDIQELV-----KDKLNGGPVK 121
Query: 221 VVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFY 279
+VAN+P+ I+T ++ + L +++V+++Q+E A R+ P T +Y ++I V +Y
Sbjct: 122 LVANLPYYITTPIVMKFLEEDIPVTDIVVMVQKEVADRMNAIPG--TKDYGALSIAVQYY 179
Query: 280 SEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
+ E K PR F PQP VD+ V+ ++ Y V + FF V
Sbjct: 180 CDTEIVAKAPRHMFIPQPNVDSTVIGLHVRDKRKYD-VHNEDIFFKTV 226
>sp|Q823V2|RSMA_CHLCV Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
caviae (strain GPIC) GN=rsmA PE=3 SV=1
Length = 278
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 19/219 (8%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIE 170
+GR P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+E
Sbjct: 17 QGR-PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALE 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230
KD + LK L D + LS E K G +VVAN+P++I+
Sbjct: 76 KDPMFE----------ETLKQLPIDLEITDACKYPLSQLE-EKGWQGKGRVVANLPYHIT 124
Query: 231 TDVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKV 288
T ++ +L L + + + V +++Q+E A R+ +P + EY + IF+ F+++ Y FKV
Sbjct: 125 TPLLTKLFLEVPNQWKTVTVMMQDEVARRITAQPGGK--EYGSLTIFLQFFADVRYAFKV 182
Query: 289 PRTNFFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSM 326
FFP+P+V +AVV +K+ +P TS + FFS+
Sbjct: 183 SPGCFFPKPQVSSAVVHMTVKET--FPLETSLHQKFFSL 219
>sp|P37468|RSMA_BACSU Ribosomal RNA small subunit methyltransferase A OS=Bacillus
subtilis (strain 168) GN=rsmA PE=3 SV=1
Length = 292
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 123/211 (58%), Gaps = 11/211 (5%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I +++ A V E V+EIGPG G+LT L V+A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILNRIVDHAEVTEKTGVIEIGPGIGALTEQLAKRAKKVVAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++++ + + + V+ +D +K ++ S+ E + VVAN+P+ ++T +I
Sbjct: 83 LPILKDTLSPYENVTVIHQDVLKADVK----SVIEEQFQDCDEIMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ +PS + EY ++I V FY+E + VP+T F
Sbjct: 139 KLLEEHLPLKGIVVMLQKEVAERMAADPS--SKEYGSLSIAVQFYTEAKTVMIVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAV-TSTKSFF 324
PQP VD+AV+ L+ D PAV +SFF
Sbjct: 197 PQPNVDSAVIRLILR---DGPAVDVENESFF 224
>sp|C1CMT3|RSMA_STRZP Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain P1031) GN=rsmA PE=3 SV=1
Length = 290
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q8DND3|RSMA_STRR6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=rsmA PE=3 SV=1
Length = 290
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q04II4|RSMA_STRP2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rsmA
PE=3 SV=1
Length = 290
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q8TWU7|RSMA_METKA Probable ribosomal RNA small subunit methyltransferase A
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=rsmA PE=3 SV=1
Length = 278
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 111/212 (52%), Gaps = 19/212 (8%)
Query: 108 LNSK-GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATV 166
L SK G PR+ LGQH+M++ I + + AA V+E DIVLEIGPG G LT L+ V
Sbjct: 10 LRSKYGIRPRRRLGQHFMVDDNILEFMVEAAEVREDDIVLEIGPGPGLLTRYLMTRAGQV 69
Query: 167 LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226
+A+E D MV +++ L++++ DF++ + KVVANIP
Sbjct: 70 IAVELDGRMVEILKRELGEAPNLEIVRADFLEYDV-------------PDDVNKVVANIP 116
Query: 227 FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYK 285
+NIS+ + +LL + VL Q E A R+V EP + +Y + + VN ++ E
Sbjct: 117 YNISSPITFKLLELD--IDVAVLTYQREFAERMVAEPG--SKKYSRLTVMVNLLADVELL 172
Query: 286 FKVPRTNFFPQPKVDAAVVTFKLKQATDYPAV 317
VPR F P P+V ++VV K + P V
Sbjct: 173 RGVPRRAFIPPPRVGSSVVRLTPKSEEERPDV 204
>sp|Q253R6|RSMA_CHLFF Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
felis (strain Fe/C-56) GN=rsmA PE=3 SV=1
Length = 284
Score = 115 bits (287), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 123/215 (57%), Gaps = 18/215 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+K L Q+++++ I ++ A + V+ GD VLEIGPG G+LT VL+N GA V+A+EKD
Sbjct: 26 PKKGLSQNFLIDGNILRKILAVSCVEAGDWVLEIGPGFGALTEVLVNQGAHVVALEKDP- 84
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ E ++ QL + E C L + K G +VVAN+P++I+T ++
Sbjct: 85 ---MFEE---TLKQLPIDLEITDACKYPLSQL----QEKGWQGKGRVVANLPYHITTPLL 134
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L + + + + +++Q+E A R+ +P EY + IF+ F+++ Y FKV
Sbjct: 135 TKLFLEVPNQWKTITVMMQDEVARRITAQPG--GKEYGSLTIFLQFFADVRYAFKVSSGC 192
Query: 293 FFPQPKVDAAVVTFKLKQATDYPAVTST-KSFFSM 326
FFP+P+V +AVV +K +P S K FFS+
Sbjct: 193 FFPKPQVSSAVVHMTVKDT--FPLEESLHKKFFSL 225
>sp|C1CA29|RSMA_STRP7 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain 70585) GN=rsmA PE=3 SV=1
Length = 290
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|C1CTN9|RSMA_STRZT Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Taiwan19F-14) GN=rsmA PE=3 SV=1
Length = 290
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q97NN5|RSMA_STRPN Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=rsmA PE=3 SV=2
Length = 290
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|B8ZNY9|RSMA_STRPJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rsmA
PE=3 SV=1
Length = 290
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|B2IM67|RSMA_STRPS Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain CGSP14) GN=rsmA PE=3 SV=1
Length = 290
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+ E D +V ++ + D + V+ ED +K + H+ + K+
Sbjct: 65 AERAAQVMTFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|A6TJK9|RSMA_ALKMQ Ribosomal RNA small subunit methyltransferase A OS=Alkaliphilus
metalliredigens (strain QYMF) GN=rsmA PE=3 SV=1
Length = 287
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 117/204 (57%), Gaps = 7/204 (3%)
Query: 106 KALNSKGRFP-RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
KA+ K +F KSLGQ+++++ I + + A +Q D V+EIGPG G+LT +
Sbjct: 11 KAIVEKYKFRFSKSLGQNFLIDQNILEDIVDGADIQPDDCVIEIGPGIGTLTQFIAEKAH 70
Query: 165 TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224
V+AIE D++++ +++ A ++V+ +D +K + + FE + KV+AN
Sbjct: 71 KVVAIEIDRNLIPILKHTLADYQNVEVINQDVLKVDLHQLIADKFEGKP-----VKVIAN 125
Query: 225 IPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEY 284
+P+ ++T ++ + L +V+++Q+E A+R+ + T +Y ++I V +Y PE
Sbjct: 126 LPYYVTTPIVMRFLEEKVPVDSLVIMIQKEVAVRM-QAGPGTKDYGALSIAVQYYCNPEI 184
Query: 285 KFKVPRTNFFPQPKVDAAVVTFKL 308
KVP + F PQPKV++ V+ ++
Sbjct: 185 LLKVPPSVFIPQPKVESIVIKLQV 208
>sp|B1I8T7|RSMA_STRPI Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain Hungary19A-6) GN=rsmA PE=3 SV=1
Length = 290
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|B5E2H6|RSMA_STRP4 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae serotype 19F (strain G54) GN=rsmA PE=3 SV=1
Length = 290
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLVPILVDTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q9Z6K0|RSMA_CHLPN Ribosomal RNA small subunit methyltransferase A OS=Chlamydia
pneumoniae GN=rsmA PE=3 SV=1
Length = 277
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 117/198 (59%), Gaps = 15/198 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P+KSL Q+++++ I ++ A + V D VLEIGPG G+LT L+ AGA V+AIEKD
Sbjct: 20 PKKSLSQNFLVDQNIVKKIVATSEVIPQDWVLEIGPGFGALTEELIAAGAQVIAIEKDPM 79
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
S+++L + E C L ++ + G +VVAN+P++I+T ++
Sbjct: 80 FA-------PSLEELPIRLEIIDACKYPLDQLQEYK----TLGKGRVVANLPYHITTPLL 128
Query: 235 KQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+L L D + V +++Q+E A R+V +P R +Y + IF+ F+++ Y FKV +
Sbjct: 129 TKLFLEAPDFWKTVTVMVQDEVARRIVAQPGGR--DYGSLTIFLQFFADIHYAFKVSASC 186
Query: 293 FFPQPKVDAAVVTFKLKQ 310
F+P+P+V +AV+ K+K+
Sbjct: 187 FYPKPQVQSAVIHMKVKE 204
>sp|C1CGR5|RSMA_STRZJ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pneumoniae (strain JJA) GN=rsmA PE=3 SV=1
Length = 290
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 113/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D ++ ++ + D + V+ ED +K + H+ + K+ +
Sbjct: 65 AERAAQVMAFEIDHRLMPILADTLRDFDNVTVVNEDILKVDLAQHIQNF----KNPNLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G F E V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFCEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|B1N079|RSMA_LEUCK Ribosomal RNA small subunit methyltransferase A OS=Leuconostoc
citreum (strain KM20) GN=rsmA PE=3 SV=1
Length = 295
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 5/199 (2%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
LN G +K GQ+++ + + + A + D V+EIGPG G+LT L + V+
Sbjct: 17 LNQYGLHAKKKFGQNFLTDLNVLHGIVDVAGITSEDYVIEIGPGIGALTEQLARSAKKVV 76
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A E D HMV ++ E D +KV++ D +K ++ + + F K+VAN+P+
Sbjct: 77 AFEIDPHMVAVLAETLLPYDNVKVIENDILKVNLAHVIATEF----GEGAHVKIVANLPY 132
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFK 287
I+T ++ QLL + +V+++Q E A RL + T Y + + + +Y++ + K
Sbjct: 133 YITTPILMQLLRAKISWDNIVVMMQREVADRL-NAEIGTKAYGVLTLTIQYYAQAQLAIK 191
Query: 288 VPRTNFFPQPKVDAAVVTF 306
VP + F P P VD+AVV
Sbjct: 192 VPASAFNPSPNVDSAVVML 210
>sp|A0LA32|RSMA_MAGSM Ribosomal RNA small subunit methyltransferase A OS=Magnetococcus
sp. (strain MC-1) GN=rsmA PE=3 SV=1
Length = 279
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 11/221 (4%)
Query: 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVL 167
L G P K GQ+++++ + ++ A A ++ GD VLEIGPG GSLT LL V
Sbjct: 11 LEQHGLSPNKRFGQNFLVDPSVAPRIVALAGIKAGDRVLEIGPGVGSLTIPLLQKAGAVT 70
Query: 168 AIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
A+EKD+ ++ L+R A + L +++ED + ++ + G K+ AN+P+
Sbjct: 71 AVEKDRKLLPLLRVEAAGVGALTLVEEDAL-------LVDYTALAQQLGGPLKLAANLPY 123
Query: 228 NISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKF 286
NIST ++ LL F + L+ Q+E A RL EP + Y + + ++E + F
Sbjct: 124 NISTPLMVHLLDHHAAFECMALMFQKEVAQRLAAEPG--SKAYGALTVQCALWAEIRHGF 181
Query: 287 KVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
VP F P PKV +AVV ++ + AV + F +V
Sbjct: 182 DVPPAAFLPAPKVTSAVVHVQMMRQPRV-AVEDERHFVRVV 221
>sp|Q1WV73|RSMA_LACS1 Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
salivarius (strain UCC118) GN=rsmA PE=3 SV=1
Length = 296
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 7/196 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ+++ + I + AAA V E D V+EIGPG G+LT L V+A+E D +
Sbjct: 26 KKSLGQNFLTDINILKNIVAAAEVSEEDNVIEIGPGIGALTEQLAKRANKVMALEIDDRL 85
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + + ++V+ +D +K +++ + FE K+VAN+P+ I+T ++
Sbjct: 86 LPVLADTLSPYENVEVVHQDILKADLKALIAEHFE----PGHKLKLVANLPYYITTPILM 141
Query: 236 QLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
LL G F +V+++Q+E A RL P T Y +++ V + + E F VP+T F
Sbjct: 142 HLLDSGIEFETIVVMMQKEVAERLAANPG--TKAYGSLSVAVQYEMDSEIAFIVPKTVFV 199
Query: 295 PQPKVDAAVVTFKLKQ 310
PQP VD+A++ K+
Sbjct: 200 PQPNVDSAIIVLNKKK 215
>sp|Q5LY12|RSMA_STRT1 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain CNRZ 1066) GN=rsmA PE=3 SV=1
Length = 290
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFAVPRTVFVPAPNVDSAIL 204
>sp|Q03IR2|RSMA_STRTD Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rsmA PE=3
SV=1
Length = 290
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVNTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTTKVAFAVPRTVFVPAPNVDSAIL 204
>sp|Q5M2L6|RSMA_STRT2 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rsmA
PE=3 SV=1
Length = 290
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEINKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ V+A E D+ +V ++ + D +KV+ ED +K +++ + ++
Sbjct: 65 AENASEVMAFEIDERLVPILEDTLRDHDNVKVINEDVLKADLQTRVKEF----ENPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ FSE V+++Q+E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFSEFVVMMQKEVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTTKMAFAVPRTVFVPAPNVDSAIL 204
>sp|Q9CHN8|RSMA_LACLA Ribosomal RNA small subunit methyltransferase A OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=rsmA PE=3 SV=1
Length = 294
Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 110/196 (56%), Gaps = 5/196 (2%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+K GQ+++ + I ++ A + + V+EIGPG GSLT LL A V+A E D+ +
Sbjct: 27 KKKFGQNFLTDHNILTKITQTAELSKEVNVIEIGPGIGSLTQYLLEEAAEVMAFEIDKSL 86
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ E A D ++ D +K +LS ++ K+ + KVVAN+P+ I+T ++
Sbjct: 87 IPILEETMAPYDNFTLVSADILKV----DLLSEIQKFKNPNLPIKVVANLPYYITTPILM 142
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFP 295
L+ FSE V+++Q+E A R + S +T Y ++I V +Y E F VPRT F P
Sbjct: 143 HLIESKIPFSEFVVMMQKEVADR-IAASPKTKAYGSLSIAVQYYMEASVAFIVPRTVFIP 201
Query: 296 QPKVDAAVVTFKLKQA 311
P VD+A++ ++A
Sbjct: 202 APNVDSAILKMVRREA 217
>sp|B2J0A6|RSMA_NOSP7 Ribosomal RNA small subunit methyltransferase A OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=rsmA PE=3
SV=1
Length = 286
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 122/216 (56%), Gaps = 19/216 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQE------GDIVLEIGPGTGSLTNVLLNAGATVLA 168
PRK QH++ + + D + AA E GD +LEIGPGTG LT LL +++A
Sbjct: 4 PRKVFAQHWLKSEKALDAIIKAAECTESDRSPKGDCILEIGPGTGILTRRLLPLVQSLIA 63
Query: 169 IEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+E D+ + L+ ++ + +LQ DF+ + S++++ +K + KVVANIP+N
Sbjct: 64 VEIDRDLCQLLSKQLGKTENFLLLQGDFLTLDLPSYLVAFPNFQKPN----KVVANIPYN 119
Query: 229 ISTDVIKQLL-----PMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNFYSEP 282
I+ +I++LL P + F +VLL+Q+E A RL +P +T + +++ V + +E
Sbjct: 120 ITGPIIEKLLGTIANPNPEPFDSIVLLVQKEVAERLYAKPGSKT--FGALSVRVQYLAEC 177
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT 318
E VP + F P PKVD+AVV + ++ + PA+
Sbjct: 178 ELICTVPASAFHPAPKVDSAVVRLRPRK-IEIPALN 212
>sp|Q8YS62|RSMA_NOSS1 Ribosomal RNA small subunit methyltransferase A OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rsmA PE=3 SV=1
Length = 271
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 10/201 (4%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
PRK QH++ + + D + AA D +LEIGPGTG LT LL A +++A+E D+
Sbjct: 4 PRKLFAQHWLKSEKALDAIVKAAECSTNDRILEIGPGTGILTRRLLPAVQSLVAVEIDRD 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ L+ ++ + +LQ DF+ + +++ S + +K + KVVANIP+NI+ +I
Sbjct: 64 LCELLAKQLGKKENFLLLQGDFLTIDLAANLGSFPKFQKPN----KVVANIPYNITGPII 119
Query: 235 KQLL-----PMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++LL P + F +VLL+Q+E A RL S + + +++ V + ++ E+ VP
Sbjct: 120 EKLLGTISNPNLEPFDSIVLLIQKEVAERLYAKS-GSRTFGALSVRVQYLADCEFICDVP 178
Query: 290 RTNFFPQPKVDAAVVTFKLKQ 310
+ F P PKVD+AVV + +Q
Sbjct: 179 ASAFHPPPKVDSAVVRLRPRQ 199
>sp|Q8P2N8|RSMA_STRP8 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M18 (strain MGAS8232) GN=rsmA PE=3
SV=1
Length = 290
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|A8AUQ4|RSMA_STRGC Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
gordonii (strain Challis / ATCC 35105 / CH1 / DL1 /
V288) GN=rsmA PE=3 SV=1
Length = 290
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D + V+ +D +K + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVDLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q+E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q9A1I0|RSMA_STRP1 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M1 GN=rsmA PE=3 SV=1
Length = 290
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q5L6H5|RSMA_CHLAB Ribosomal RNA small subunit methyltransferase A OS=Chlamydophila
abortus (strain S26/3) GN=rsmA PE=3 SV=1
Length = 278
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 123/217 (56%), Gaps = 17/217 (7%)
Query: 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEK 171
GR P+K L Q+++++ I ++ A + VQ GD VLEIGPG G+LT VL+N GA V+A+EK
Sbjct: 18 GR-PKKGLSQNFLIDGNILRKILAVSCVQAGDWVLEIGPGFGALTEVLVNQGAHVVALEK 76
Query: 172 DQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231
D ++ E ++ QL + E C L + + G +VVAN+P++I+T
Sbjct: 77 D----SMLEE---TLKQLPIHLEITDACKYPLSQL----QDQGWQGKGRVVANLPYHITT 125
Query: 232 DVIKQL-LPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVP 289
++++L L + + V +++Q+E A R+ +P EY + IF+ F+ + Y FKV
Sbjct: 126 PLLRKLFLEAPNQWKTVTVMIQDEVARRITAQPG--GKEYGSLTIFLQFFVDVHYAFKVS 183
Query: 290 RTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSM 326
F P+P+V +AVV +K+ TK FFS+
Sbjct: 184 PGCFLPKPQVASAVVHMTVKENFPLEEPLRTK-FFSL 219
>sp|A2RCH2|RSMA_STRPG Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M5 (strain Manfredo) GN=rsmA PE=3 SV=1
Length = 290
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q5XDX4|RSMA_STRP6 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
GN=rsmA PE=3 SV=2
Length = 290
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q03T56|RSMA_LACBA Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
brevis (strain ATCC 367 / JCM 1170) GN=rsmA PE=3 SV=1
Length = 296
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 119/211 (56%), Gaps = 8/211 (3%)
Query: 103 ATIKALNSKGRF-PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN 161
A KA+ ++ R +KSLGQ+++ + I + AA V + D V+EIGPG G+LT +
Sbjct: 12 ARTKAILNRYRLVAKKSLGQNFLSDLNILRNIVAAGDVNDHDNVIEIGPGIGALTEQIAK 71
Query: 162 AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221
V+A E D++++ ++ E +K++ ED +K ++ + + FE + K+
Sbjct: 72 RAHKVVAFEIDENLLPVLDETLMDYKNVKIINEDILKANLPAVVADEFEADRP----LKL 127
Query: 222 VANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYS 280
VAN+P+ I+T ++ +L F +V+++Q E A RLV EP T Y +++ + + +
Sbjct: 128 VANLPYYITTPILMGVLQSTVRFEAIVVMMQAEVAERLVAEPG--TKAYGSLSVIMQYRA 185
Query: 281 EPEYKFKVPRTNFFPQPKVDAAVVTFKLKQA 311
E F VPRT F PQP VD+A++ ++A
Sbjct: 186 HVEIAFNVPRTAFIPQPNVDSAIIRLTPREA 216
>sp|Q48VC6|RSMA_STRPM Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M28 (strain MGAS6180) GN=rsmA PE=3
SV=1
Length = 298
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAIL 212
>sp|Q1JIN6|RSMA_STRPD Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M2 (strain MGAS10270) GN=rsmA PE=3
SV=1
Length = 298
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAIL 212
>sp|Q1JNI8|RSMA_STRPC Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M12 (strain MGAS9429) GN=rsmA PE=3
SV=1
Length = 298
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAIL 212
>sp|Q1JDL6|RSMA_STRPB Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M12 (strain MGAS2096) GN=rsmA PE=3
SV=1
Length = 298
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAIL 212
>sp|P0DF13|RSMA_STRPQ Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M3 (strain SSI-1) GN=rsmA PE=3 SV=1
Length = 290
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q1J8J4|RSMA_STRPF Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M4 (strain MGAS10750) GN=rsmA PE=3
SV=1
Length = 298
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 13 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 72
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 73 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 128
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 129 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 186
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 187 YMTAKVAFIVPRTVFVPAPNVDSAIL 212
>sp|P0DF12|RSMA_STRP3 Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
GN=rsmA PE=3 SV=1
Length = 290
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 114/206 (55%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L+ G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTKAVLDRHGFTFKKSFGQNFLTDTNILQKIVDTAEIDQNVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
A V+A E D +V ++ + D ++V+ +D +K +++ + ++ K+
Sbjct: 65 AENAAEVMAFEIDDRLVPILADTLRDFDNVQVVNQDILKADLQTQI----KQFKNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ F E V+++Q E A R+ EP+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESKIPFQEFVVMMQREVADRISAEPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPRT F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRTVFVPAPNVDSAIL 204
>sp|Q38V22|RSMA_LACSS Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1
Length = 297
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T K L G +KSLGQ+++ N I Q+ A + + D V+EIGPG GSLT +
Sbjct: 10 TKKILKRYGFKFKKSLGQNFLTNITILKQIVEAGEITKDDDVIEIGPGIGSLTEQIARKA 69
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
VL+ E D ++ ++++ + VL +D ++ + + + F+ + + K+VA
Sbjct: 70 HQVLSFEIDDRLIPVLKDTLNHYHNVTVLNQDILEADLPTLIAKHFDGQHN----LKIVA 125
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPE 283
N+P+ I+T ++ LL G +VL++Q+E A R ++ + + Y ++I V +SE +
Sbjct: 126 NLPYYITTPIMLHLLEAGLPIDRMVLMMQKEVAER-IDAAPGSKAYGSLSIAVQLHSEVK 184
Query: 284 YKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVT-STKSFFSMVV 328
F VP+T F PQP VD+A+V F +Q P VT + F +V
Sbjct: 185 LAFIVPKTAFVPQPNVDSAIVEFVGRQE---PLVTVQNQQLFDQLV 227
>sp|A8F909|RSMA_BACP2 Ribosomal RNA small subunit methyltransferase A OS=Bacillus pumilus
(strain SAFR-032) GN=rsmA PE=3 SV=1
Length = 292
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 120/213 (56%), Gaps = 8/213 (3%)
Query: 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHM 175
+KSLGQ++++++ I D++ A V + V+EIGPG G+LT L V A E DQ +
Sbjct: 23 KKSLGQNFLIDTNILDRIVDHAEVTDETGVIEIGPGIGALTEQLAKRAKKVTAFEIDQRL 82
Query: 176 VGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235
+ ++ + + D + ++ +D +K + + E + VVAN+P+ ++T +I
Sbjct: 83 LPILNDTLSPYDNVTIIHQDVLKADVG----KVIEENFADCKEVMVVANLPYYVTTPIIM 138
Query: 236 QLLPMGDIFSEVVLLLQEETALRLVE-PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL +V++LQ+E A R+ PS + EY ++I V +Y+E + VP+T F
Sbjct: 139 KLLEENLPLKGIVVMLQKEVADRMAAIPS--SKEYNSLSIAVQYYTEAKTVMVVPKTVFV 196
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
PQP VD+AV+ +++ T +V + + FF ++
Sbjct: 197 PQPNVDSAVIKLTVRE-TPAVSVENDEFFFQLI 228
>sp|A3CQN5|RSMA_STRSV Ribosomal RNA small subunit methyltransferase A OS=Streptococcus
sanguinis (strain SK36) GN=rsmA PE=3 SV=1
Length = 290
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 7/206 (3%)
Query: 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVL 159
DY T L G +KS GQ+++ ++ I ++ A + + V+EIGPG G+LT L
Sbjct: 5 DYSVTRAILERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDKKVNVIEIGPGIGALTEFL 64
Query: 160 LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219
+ A V+A E D +V ++ + D + V+ +D +K ++ ++ K+
Sbjct: 65 AESAAEVMAFEIDDRLVPILADTLRDFDNVTVVNQDILKVNLAQYIAEF----KNPDLPI 120
Query: 220 KVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRL-VEPSLRTSEYRPINIFVNF 278
KVVAN+P+ I+T ++ L+ G FSE V+++Q E A R+ +P+ T Y ++I V +
Sbjct: 121 KVVANLPYYITTPILMHLIESGIPFSEFVVMMQREVADRISAQPN--TKAYGSLSIAVQY 178
Query: 279 YSEPEYKFKVPRTNFFPQPKVDAAVV 304
Y + F VPR F P P VD+A++
Sbjct: 179 YMTAKVAFIVPRKVFVPAPNVDSAIL 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,365,344
Number of Sequences: 539616
Number of extensions: 4977990
Number of successful extensions: 15500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 13306
Number of HSP's gapped (non-prelim): 833
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)