Query 017450
Match_columns 371
No_of_seqs 489 out of 3596
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0030 KsgA Dimethyladenosine 100.0 1.2E-56 2.7E-61 418.6 19.7 234 114-361 3-236 (259)
2 PTZ00338 dimethyladenosine tra 100.0 4.2E-50 9.2E-55 385.4 18.8 217 110-344 5-224 (294)
3 PRK00274 ksgA 16S ribosomal RN 100.0 9.6E-48 2.1E-52 366.4 20.2 245 103-362 4-251 (272)
4 TIGR00755 ksgA dimethyladenosi 100.0 9.4E-46 2E-50 349.2 18.5 234 113-362 1-236 (253)
5 PRK14896 ksgA 16S ribosomal RN 100.0 1.7E-44 3.7E-49 341.6 18.8 213 114-345 2-214 (258)
6 PF00398 RrnaAD: Ribosomal RNA 100.0 8.3E-45 1.8E-49 344.4 13.2 241 113-364 2-245 (262)
7 KOG0820 Ribosomal RNA adenine 100.0 2E-41 4.3E-46 312.0 15.0 217 110-344 27-246 (315)
8 smart00650 rADc Ribosomal RNA 100.0 9.2E-36 2E-40 264.5 12.8 167 130-309 2-168 (169)
9 KOG0821 Predicted ribosomal RN 100.0 6.8E-31 1.5E-35 235.6 11.5 254 106-362 15-285 (326)
10 COG2518 Pcm Protein-L-isoaspar 99.7 1.9E-15 4.2E-20 137.0 14.3 143 89-244 4-166 (209)
11 COG2263 Predicted RNA methylas 99.6 4.1E-14 9E-19 125.6 15.5 169 112-307 14-195 (198)
12 PF01135 PCMT: Protein-L-isoas 99.6 1.8E-14 3.9E-19 132.3 11.7 145 87-244 2-169 (209)
13 PRK13942 protein-L-isoaspartat 99.6 1E-13 2.2E-18 127.6 15.5 145 86-243 5-172 (212)
14 TIGR00080 pimt protein-L-isoas 99.5 1.4E-13 3E-18 126.8 15.4 147 85-243 5-173 (215)
15 PRK13944 protein-L-isoaspartat 99.5 3.7E-13 8E-18 123.2 14.9 144 87-243 2-169 (205)
16 PHA03412 putative methyltransf 99.5 4.1E-13 8.8E-18 124.4 11.3 109 104-231 15-128 (241)
17 PRK00312 pcm protein-L-isoaspa 99.4 6.6E-12 1.4E-16 115.3 15.8 145 85-242 7-170 (212)
18 COG4123 Predicted O-methyltran 99.3 7.8E-12 1.7E-16 116.7 8.7 97 122-231 28-129 (248)
19 PF12847 Methyltransf_18: Meth 99.3 1.8E-11 3.8E-16 100.2 9.8 73 141-225 1-78 (112)
20 PHA03411 putative methyltransf 99.3 2.7E-11 5.9E-16 114.7 11.7 109 100-230 29-139 (279)
21 PF05175 MTS: Methyltransferas 99.3 1.8E-11 4E-16 108.7 9.9 86 132-230 22-111 (170)
22 PF13659 Methyltransf_26: Meth 99.3 2.3E-11 5E-16 100.4 8.5 79 142-230 1-83 (117)
23 PRK14967 putative methyltransf 99.2 6.9E-11 1.5E-15 109.5 11.7 93 126-231 21-115 (223)
24 TIGR01177 conserved hypothetic 99.2 7.9E-11 1.7E-15 115.5 12.2 97 123-231 164-262 (329)
25 PRK13943 protein-L-isoaspartat 99.2 2.5E-10 5.5E-15 111.3 14.8 145 86-243 6-176 (322)
26 TIGR00537 hemK_rel_arch HemK-r 99.2 8.5E-11 1.8E-15 105.1 10.2 86 131-230 9-95 (179)
27 COG2242 CobL Precorrin-6B meth 99.2 1.5E-10 3.2E-15 103.2 9.9 115 123-249 16-137 (187)
28 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.4E-10 3E-15 105.9 10.0 90 128-228 39-132 (199)
29 PRK13168 rumA 23S rRNA m(5)U19 99.1 3.1E-10 6.7E-15 115.6 12.1 104 128-239 284-389 (443)
30 PRK15001 SAM-dependent 23S rib 99.1 4.1E-10 8.9E-15 112.0 12.0 87 130-229 217-310 (378)
31 TIGR00477 tehB tellurite resis 99.1 3.3E-10 7.2E-15 102.9 10.3 85 132-229 21-106 (195)
32 COG2890 HemK Methylase of poly 99.1 3.1E-10 6.7E-15 108.9 10.5 74 144-231 113-190 (280)
33 PRK08287 cobalt-precorrin-6Y C 99.1 9.9E-10 2.1E-14 98.8 13.0 92 121-226 11-106 (187)
34 PTZ00098 phosphoethanolamine N 99.1 5.7E-10 1.2E-14 106.1 12.0 99 114-224 23-124 (263)
35 COG2226 UbiE Methylase involve 99.1 3.9E-10 8.4E-15 105.2 10.5 91 118-224 32-126 (238)
36 PRK10258 biotin biosynthesis p 99.1 1.3E-10 2.8E-15 109.3 7.3 91 125-230 26-116 (251)
37 TIGR03533 L3_gln_methyl protei 99.1 4.5E-10 9.7E-15 108.0 11.1 79 140-231 120-203 (284)
38 PRK03522 rumB 23S rRNA methylu 99.1 3.4E-10 7.4E-15 110.3 10.4 105 123-238 151-262 (315)
39 PRK14966 unknown domain/N5-glu 99.1 4.6E-10 9.9E-15 112.2 11.0 81 140-231 250-333 (423)
40 PRK14968 putative methyltransf 99.1 9.6E-10 2.1E-14 98.1 11.7 89 130-231 12-104 (188)
41 PF13847 Methyltransf_31: Meth 99.1 7E-10 1.5E-14 96.3 10.5 77 140-227 2-83 (152)
42 COG3963 Phospholipid N-methylt 99.1 5.9E-10 1.3E-14 97.2 9.7 101 115-227 22-127 (194)
43 PRK11207 tellurite resistance 99.1 5.9E-10 1.3E-14 101.4 9.6 84 132-228 21-106 (197)
44 KOG3420 Predicted RNA methylas 99.1 2.4E-10 5.3E-15 97.3 6.5 105 112-229 16-126 (185)
45 TIGR02752 MenG_heptapren 2-hep 99.1 1.5E-09 3.2E-14 100.6 12.4 90 126-227 30-124 (231)
46 TIGR02469 CbiT precorrin-6Y C5 99.1 2E-09 4.3E-14 89.1 11.9 91 125-226 3-97 (124)
47 PLN02233 ubiquinone biosynthes 99.1 1.4E-09 2.9E-14 103.4 11.9 87 129-227 61-155 (261)
48 TIGR03534 RF_mod_PrmC protein- 99.1 1.3E-09 2.8E-14 101.9 11.7 90 128-231 75-168 (251)
49 TIGR03704 PrmC_rel_meth putati 99.1 1.4E-09 3E-14 102.8 11.8 92 129-231 73-167 (251)
50 COG2227 UbiG 2-polyprenyl-3-me 99.1 4.8E-10 1E-14 103.5 8.3 151 106-270 21-191 (243)
51 PF07021 MetW: Methionine bios 99.1 2.1E-10 4.5E-15 102.9 5.7 138 132-306 6-145 (193)
52 COG2230 Cfa Cyclopropane fatty 99.0 9.1E-10 2E-14 104.7 10.0 81 128-223 59-143 (283)
53 PRK11805 N5-glutamine S-adenos 99.0 1.1E-09 2.4E-14 106.3 10.7 76 143-231 135-215 (307)
54 TIGR00536 hemK_fam HemK family 99.0 1.4E-09 2.9E-14 104.6 11.0 91 129-232 101-197 (284)
55 PF01209 Ubie_methyltran: ubiE 99.0 8.4E-10 1.8E-14 103.1 9.0 87 127-225 33-124 (233)
56 PLN02244 tocopherol O-methyltr 99.0 1.7E-09 3.7E-14 106.5 11.6 87 128-226 100-195 (340)
57 PRK14103 trans-aconitate 2-met 99.0 7.8E-10 1.7E-14 104.4 8.9 83 130-230 18-102 (255)
58 PF13649 Methyltransf_25: Meth 99.0 1.6E-09 3.5E-14 87.5 9.2 81 145-237 1-89 (101)
59 TIGR00138 gidB 16S rRNA methyl 99.0 1.8E-09 3.9E-14 97.1 10.3 72 141-225 42-117 (181)
60 PRK09489 rsmC 16S ribosomal RN 99.0 2.1E-09 4.6E-14 105.9 11.3 85 131-229 186-273 (342)
61 PF02353 CMAS: Mycolic acid cy 99.0 1.6E-09 3.5E-14 103.5 10.1 81 128-223 49-133 (273)
62 PRK00107 gidB 16S rRNA methylt 99.0 2.2E-09 4.7E-14 97.1 10.2 74 139-225 43-120 (187)
63 PRK11036 putative S-adenosyl-L 99.0 1.7E-09 3.8E-14 102.1 10.0 85 131-227 35-122 (255)
64 PRK09328 N5-glutamine S-adenos 99.0 3E-09 6.6E-14 101.0 11.7 90 128-230 95-188 (275)
65 TIGR02085 meth_trns_rumB 23S r 99.0 2.1E-09 4.5E-14 107.3 10.9 105 123-238 211-322 (374)
66 COG4106 Tam Trans-aconitate me 99.0 7.5E-10 1.6E-14 100.3 6.6 96 131-242 20-124 (257)
67 TIGR00479 rumA 23S rRNA (uraci 99.0 3.2E-09 7E-14 107.8 11.4 102 129-238 280-384 (431)
68 PRK01544 bifunctional N5-gluta 99.0 3.1E-09 6.7E-14 109.9 11.0 79 141-232 138-221 (506)
69 PF02384 N6_Mtase: N-6 DNA Met 99.0 2.3E-09 5E-14 104.0 9.3 106 114-230 20-138 (311)
70 PRK01683 trans-aconitate 2-met 99.0 3.5E-09 7.6E-14 99.9 10.3 85 129-229 19-105 (258)
71 TIGR02021 BchM-ChlM magnesium 98.9 5.2E-09 1.1E-13 96.4 10.8 82 128-224 40-126 (219)
72 PRK00121 trmB tRNA (guanine-N( 98.9 2.5E-09 5.5E-14 97.7 8.6 76 141-226 40-120 (202)
73 PRK00377 cbiT cobalt-precorrin 98.9 1.2E-08 2.5E-13 92.9 12.7 94 122-226 21-120 (198)
74 TIGR00095 RNA methyltransferas 98.9 6.3E-09 1.4E-13 94.2 10.4 98 123-228 30-132 (189)
75 PF01170 UPF0020: Putative RNA 98.9 4.2E-09 9.2E-14 94.5 9.0 96 123-230 10-119 (179)
76 PRK15451 tRNA cmo(5)U34 methyl 98.9 6.4E-09 1.4E-13 97.9 10.4 74 140-227 55-135 (247)
77 COG4122 Predicted O-methyltran 98.9 3.3E-09 7.2E-14 97.6 8.1 92 123-224 41-139 (219)
78 COG2264 PrmA Ribosomal protein 98.9 5.1E-09 1.1E-13 100.4 9.6 99 141-252 162-268 (300)
79 PLN02396 hexaprenyldihydroxybe 98.9 5.8E-09 1.3E-13 101.9 10.1 73 140-224 130-205 (322)
80 TIGR02987 met_A_Alw26 type II 98.9 3.7E-09 8E-14 110.0 9.3 106 117-230 1-125 (524)
81 PRK12335 tellurite resistance 98.9 6.5E-09 1.4E-13 100.0 10.2 75 140-227 119-194 (287)
82 TIGR03587 Pse_Me-ase pseudamin 98.9 1.1E-08 2.3E-13 93.9 11.0 72 139-226 41-114 (204)
83 PRK11727 23S rRNA mA1618 methy 98.9 1E-08 2.2E-13 99.8 11.5 84 141-232 114-204 (321)
84 COG2813 RsmC 16S RNA G1207 met 98.9 7.7E-09 1.7E-13 98.8 10.3 91 130-234 147-241 (300)
85 PRK07402 precorrin-6B methylas 98.9 7.3E-09 1.6E-13 93.9 9.7 76 123-198 22-101 (196)
86 PF08241 Methyltransf_11: Meth 98.9 6.6E-09 1.4E-13 81.5 8.1 70 146-228 1-71 (95)
87 PLN02781 Probable caffeoyl-CoA 98.9 8.6E-09 1.9E-13 96.4 9.9 98 123-226 50-153 (234)
88 PRK11088 rrmA 23S rRNA methylt 98.9 1.6E-08 3.5E-13 96.5 11.8 89 140-243 84-177 (272)
89 KOG1270 Methyltransferases [Co 98.9 1.3E-09 2.9E-14 101.4 4.1 75 142-238 90-172 (282)
90 PLN02336 phosphoethanolamine N 98.9 1.5E-08 3.2E-13 104.1 12.3 97 117-225 240-340 (475)
91 PRK15128 23S rRNA m(5)C1962 me 98.9 1.6E-08 3.4E-13 101.5 11.8 99 123-231 204-307 (396)
92 PF06325 PrmA: Ribosomal prote 98.9 7.8E-09 1.7E-13 99.6 9.0 79 139-233 159-241 (295)
93 PLN02336 phosphoethanolamine N 98.8 1.1E-08 2.4E-13 105.0 10.1 95 125-229 21-115 (475)
94 PRK04266 fibrillarin; Provisio 98.8 2.3E-08 4.9E-13 93.1 11.1 82 136-226 67-150 (226)
95 TIGR00091 tRNA (guanine-N(7)-) 98.8 1.4E-08 3.1E-13 92.1 9.3 77 141-226 16-96 (194)
96 TIGR00740 methyltransferase, p 98.8 2.6E-08 5.6E-13 93.1 11.3 74 140-227 52-132 (239)
97 PRK05785 hypothetical protein; 98.8 1.2E-08 2.7E-13 94.8 8.9 68 141-226 51-119 (226)
98 PRK04148 hypothetical protein; 98.8 2.8E-08 6E-13 84.7 10.3 91 128-234 3-95 (134)
99 COG1041 Predicted DNA modifica 98.8 1.7E-08 3.7E-13 98.1 10.2 98 123-232 179-279 (347)
100 PF01596 Methyltransf_3: O-met 98.8 1.4E-08 3.1E-13 93.0 9.1 98 123-226 27-130 (205)
101 PLN02672 methionine S-methyltr 98.8 1.3E-08 2.9E-13 112.1 10.5 96 124-230 96-216 (1082)
102 PF05401 NodS: Nodulation prot 98.8 2.2E-08 4.7E-13 90.2 10.0 83 136-231 38-121 (201)
103 PRK10901 16S rRNA methyltransf 98.8 2E-08 4.3E-13 102.0 10.6 96 124-229 227-325 (427)
104 TIGR00406 prmA ribosomal prote 98.8 3.8E-08 8.3E-13 94.8 11.9 75 140-228 158-236 (288)
105 COG2519 GCD14 tRNA(1-methylade 98.8 2.1E-08 4.5E-13 93.4 9.5 162 127-309 80-251 (256)
106 PRK07580 Mg-protoporphyrin IX 98.8 4E-08 8.6E-13 90.7 11.4 83 129-226 48-136 (230)
107 PLN02585 magnesium protoporphy 98.8 2.9E-08 6.3E-13 96.7 10.3 83 128-225 128-220 (315)
108 PF03848 TehB: Tellurite resis 98.8 6E-08 1.3E-12 87.8 10.9 81 133-226 22-103 (192)
109 PF08704 GCD14: tRNA methyltra 98.8 7E-08 1.5E-12 90.7 11.7 110 125-243 24-142 (247)
110 TIGR00452 methyltransferase, p 98.8 5.8E-08 1.3E-12 94.5 11.5 98 114-225 90-196 (314)
111 PRK11705 cyclopropane fatty ac 98.8 5.6E-08 1.2E-12 97.3 11.7 82 129-226 155-237 (383)
112 COG2265 TrmA SAM-dependent met 98.8 2.8E-08 6E-13 100.6 9.3 107 127-242 279-388 (432)
113 PRK14902 16S rRNA methyltransf 98.8 2.9E-08 6.3E-13 101.2 9.5 92 126-228 235-331 (444)
114 PRK11873 arsM arsenite S-adeno 98.7 6.2E-08 1.3E-12 92.2 11.0 80 137-228 73-157 (272)
115 TIGR00446 nop2p NOL1/NOP2/sun 98.7 4.2E-08 9.1E-13 93.4 9.6 86 132-229 62-152 (264)
116 PRK14121 tRNA (guanine-N(7)-)- 98.7 6.3E-08 1.4E-12 96.3 11.1 87 133-229 114-204 (390)
117 PRK08317 hypothetical protein; 98.7 1.1E-07 2.3E-12 87.6 11.9 87 129-227 7-97 (241)
118 PRK05031 tRNA (uracil-5-)-meth 98.7 5.7E-08 1.2E-12 96.5 10.8 114 124-239 186-311 (362)
119 TIGR02072 BioC biotin biosynth 98.7 3.8E-08 8.2E-13 90.8 8.9 87 128-228 18-109 (240)
120 PF03602 Cons_hypoth95: Conser 98.7 7E-08 1.5E-12 87.0 10.3 108 126-241 25-141 (183)
121 PLN02476 O-methyltransferase 98.7 5.9E-08 1.3E-12 92.7 10.4 98 123-226 100-203 (278)
122 TIGR02143 trmA_only tRNA (urac 98.7 5.8E-08 1.3E-12 96.2 10.5 112 127-239 184-302 (353)
123 KOG2904 Predicted methyltransf 98.7 6.9E-08 1.5E-12 90.5 9.6 104 127-238 131-242 (328)
124 PRK11783 rlmL 23S rRNA m(2)G24 98.7 4.9E-08 1.1E-12 104.9 9.8 95 123-230 522-621 (702)
125 PLN02490 MPBQ/MSBQ methyltrans 98.7 9.5E-08 2.1E-12 93.9 10.9 88 127-227 98-188 (340)
126 PRK06922 hypothetical protein; 98.7 8.5E-08 1.8E-12 100.4 11.0 82 137-228 414-498 (677)
127 PRK14903 16S rRNA methyltransf 98.7 6.2E-08 1.4E-12 98.4 9.8 95 123-228 219-318 (431)
128 PRK06202 hypothetical protein; 98.7 9.3E-08 2E-12 88.9 9.8 78 138-228 57-140 (232)
129 PRK14904 16S rRNA methyltransf 98.7 8.4E-08 1.8E-12 97.9 10.3 89 128-229 237-330 (445)
130 PRK15068 tRNA mo(5)U34 methylt 98.7 7E-08 1.5E-12 94.4 9.1 86 132-230 113-203 (322)
131 PRK00216 ubiE ubiquinone/menaq 98.6 2.2E-07 4.8E-12 85.8 11.2 87 126-224 36-128 (239)
132 PRK00517 prmA ribosomal protei 98.6 1.6E-07 3.4E-12 88.6 10.2 48 139-186 117-165 (250)
133 PRK05134 bifunctional 3-demeth 98.6 2.8E-07 6E-12 85.5 11.6 90 125-225 32-122 (233)
134 PF02475 Met_10: Met-10+ like- 98.6 9.6E-08 2.1E-12 87.2 8.2 104 112-228 72-180 (200)
135 PLN03075 nicotianamine synthas 98.6 3.9E-07 8.4E-12 87.7 12.4 80 133-224 115-202 (296)
136 PRK00811 spermidine synthase; 98.6 1.8E-07 3.8E-12 90.0 9.6 75 140-225 75-158 (283)
137 PRK14901 16S rRNA methyltransf 98.6 1.6E-07 3.4E-12 95.7 9.6 99 123-229 234-337 (434)
138 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 4.5E-07 9.7E-12 82.8 11.5 88 127-226 25-115 (223)
139 TIGR03840 TMPT_Se_Te thiopurin 98.6 2.6E-07 5.5E-12 85.3 9.8 69 133-201 26-108 (213)
140 PRK04457 spermidine synthase; 98.6 3.8E-07 8.2E-12 86.8 10.9 76 139-225 64-144 (262)
141 PF09445 Methyltransf_15: RNA 98.6 1.4E-07 3E-12 83.2 6.9 79 143-230 1-82 (163)
142 TIGR02081 metW methionine bios 98.6 2.6E-07 5.7E-12 83.6 8.9 78 132-227 6-85 (194)
143 PLN02589 caffeoyl-CoA O-methyl 98.6 2.5E-07 5.4E-12 87.1 8.8 97 123-224 61-163 (247)
144 PRK11188 rrmJ 23S rRNA methylt 98.5 4.9E-07 1.1E-11 83.1 10.3 76 139-227 49-128 (209)
145 KOG3191 Predicted N6-DNA-methy 98.5 4.2E-07 9.2E-12 80.5 9.1 78 141-231 43-124 (209)
146 PRK11783 rlmL 23S rRNA m(2)G24 98.5 3.4E-07 7.4E-12 98.4 10.4 97 123-229 171-315 (702)
147 TIGR01983 UbiG ubiquinone bios 98.5 5.1E-07 1.1E-11 83.0 10.1 89 125-224 25-119 (224)
148 TIGR00563 rsmB ribosomal RNA s 98.5 3.7E-07 8E-12 92.7 10.0 96 124-229 221-321 (426)
149 COG0116 Predicted N6-adenine-s 98.5 3.6E-07 7.9E-12 90.1 9.5 94 123-228 173-310 (381)
150 PRK13255 thiopurine S-methyltr 98.5 6E-07 1.3E-11 83.1 10.4 68 133-200 29-110 (218)
151 PF05958 tRNA_U5-meth_tr: tRNA 98.5 2.6E-07 5.7E-12 91.5 8.3 105 127-232 183-293 (352)
152 PRK00050 16S rRNA m(4)C1402 me 98.5 5.9E-07 1.3E-11 86.6 9.5 91 127-225 5-98 (296)
153 KOG1541 Predicted protein carb 98.5 3.8E-07 8.2E-12 83.2 7.6 86 123-223 30-118 (270)
154 COG0742 N6-adenine-specific me 98.5 1.2E-06 2.7E-11 78.6 10.6 93 127-228 27-125 (187)
155 smart00828 PKS_MT Methyltransf 98.5 5.2E-07 1.1E-11 83.1 8.3 69 143-224 1-74 (224)
156 COG2521 Predicted archaeal met 98.5 1.9E-07 4.1E-12 85.8 5.1 117 134-260 127-266 (287)
157 TIGR00438 rrmJ cell division p 98.4 1.1E-06 2.3E-11 79.2 9.3 76 137-225 28-106 (188)
158 PRK01581 speE spermidine synth 98.4 1.9E-06 4.1E-11 85.0 11.7 78 139-227 148-236 (374)
159 KOG1661 Protein-L-isoaspartate 98.4 1E-06 2.2E-11 79.9 8.9 111 121-243 60-189 (237)
160 PF13489 Methyltransf_23: Meth 98.4 1.7E-06 3.7E-11 74.7 10.1 76 131-226 11-87 (161)
161 PF08242 Methyltransf_12: Meth 98.4 3E-08 6.5E-13 79.5 -0.9 73 146-228 1-77 (99)
162 PLN02366 spermidine synthase 98.4 1.5E-06 3.1E-11 84.6 10.5 77 140-226 90-174 (308)
163 cd02440 AdoMet_MTases S-adenos 98.4 1.3E-06 2.8E-11 68.1 8.1 75 144-229 1-78 (107)
164 TIGR02716 C20_methyl_CrtF C-20 98.4 2.5E-06 5.4E-11 82.7 11.6 71 129-200 137-212 (306)
165 PRK03612 spermidine synthase; 98.4 1.1E-06 2.3E-11 91.5 9.4 78 140-228 296-384 (521)
166 TIGR00417 speE spermidine synt 98.4 2E-06 4.4E-11 82.0 10.3 77 140-227 71-155 (270)
167 KOG1540 Ubiquinone biosynthesi 98.4 3.3E-06 7.1E-11 78.7 10.9 82 118-203 81-175 (296)
168 PTZ00146 fibrillarin; Provisio 98.4 2.5E-06 5.5E-11 81.9 10.3 81 136-226 127-211 (293)
169 TIGR03438 probable methyltrans 98.3 4.1E-06 8.8E-11 81.2 11.4 68 130-199 54-127 (301)
170 PRK04338 N(2),N(2)-dimethylgua 98.3 3.3E-06 7.2E-11 84.5 10.9 102 122-236 37-143 (382)
171 COG2520 Predicted methyltransf 98.3 1.8E-06 3.8E-11 84.6 7.4 95 122-228 169-267 (341)
172 smart00138 MeTrc Methyltransfe 98.2 4.1E-06 8.9E-11 79.8 9.0 72 140-223 98-209 (264)
173 KOG1499 Protein arginine N-met 98.2 4.1E-06 8.8E-11 81.4 8.7 73 139-224 58-134 (346)
174 COG4076 Predicted RNA methylas 98.2 1.7E-06 3.6E-11 77.1 5.3 61 141-201 32-94 (252)
175 COG4976 Predicted methyltransf 98.2 3.2E-07 6.9E-12 84.1 0.8 88 127-227 111-200 (287)
176 TIGR00478 tly hemolysin TlyA f 98.2 7.1E-06 1.5E-10 76.4 9.6 48 131-178 64-113 (228)
177 PRK10742 putative methyltransf 98.2 7.3E-06 1.6E-10 76.8 9.5 88 131-229 76-176 (250)
178 PF05724 TPMT: Thiopurine S-me 98.2 6.8E-06 1.5E-10 76.1 9.0 85 126-222 23-121 (218)
179 PRK13256 thiopurine S-methyltr 98.2 1.4E-05 3.1E-10 74.2 10.9 76 125-201 28-117 (226)
180 PF02390 Methyltransf_4: Putat 98.1 9.9E-06 2.1E-10 73.7 8.9 76 142-226 18-97 (195)
181 PF05185 PRMT5: PRMT5 arginine 98.1 1.5E-05 3.2E-10 81.4 11.0 70 142-224 187-265 (448)
182 KOG2730 Methylase [General fun 98.1 4.7E-06 1E-10 76.0 6.5 110 120-237 72-185 (263)
183 KOG1271 Methyltransferases [Ge 98.1 1.2E-05 2.6E-10 71.5 8.7 102 98-201 21-132 (227)
184 KOG1500 Protein arginine N-met 98.1 9.5E-06 2.1E-10 78.2 7.9 82 130-225 166-251 (517)
185 KOG2915 tRNA(1-methyladenosine 98.1 1.9E-05 4.2E-10 74.2 9.6 88 130-227 94-187 (314)
186 PF08003 Methyltransf_9: Prote 98.1 1.9E-05 4.1E-10 75.8 9.8 90 131-233 105-199 (315)
187 PF08123 DOT1: Histone methyla 98.0 1.5E-05 3.2E-10 73.1 8.0 94 125-227 26-133 (205)
188 COG0220 Predicted S-adenosylme 98.0 2.3E-05 4.9E-10 73.0 8.9 77 142-227 49-129 (227)
189 PLN02823 spermine synthase 98.0 2.4E-05 5.2E-10 77.0 9.6 74 141-225 103-184 (336)
190 COG1092 Predicted SAM-dependen 98.0 2.2E-05 4.8E-10 78.5 8.7 93 124-227 203-300 (393)
191 KOG2671 Putative RNA methylase 97.9 1.4E-05 3.1E-10 77.3 5.4 116 105-232 173-299 (421)
192 PF10294 Methyltransf_16: Puta 97.9 7.2E-05 1.6E-09 66.7 9.5 81 139-228 43-131 (173)
193 COG0286 HsdM Type I restrictio 97.9 4.9E-05 1.1E-09 78.6 9.6 204 99-311 144-378 (489)
194 KOG2187 tRNA uracil-5-methyltr 97.9 2.9E-05 6.2E-10 78.8 7.2 106 127-239 369-478 (534)
195 PF05971 Methyltransf_10: Prot 97.9 9.2E-05 2E-09 71.4 10.3 99 128-233 84-193 (299)
196 KOG4300 Predicted methyltransf 97.9 3.4E-05 7.4E-10 70.0 6.5 73 143-226 78-154 (252)
197 PF13679 Methyltransf_32: Meth 97.8 8.5E-05 1.9E-09 63.9 8.4 46 140-185 24-75 (141)
198 TIGR00308 TRM1 tRNA(guanine-26 97.8 0.00013 2.9E-09 72.8 10.5 81 143-235 46-131 (374)
199 TIGR00006 S-adenosyl-methyltra 97.7 0.00026 5.5E-09 68.7 11.2 97 122-225 1-100 (305)
200 PF10672 Methyltrans_SAM: S-ad 97.7 0.00015 3.2E-09 69.8 9.5 93 123-227 108-205 (286)
201 TIGR01444 fkbM_fam methyltrans 97.7 7.9E-05 1.7E-09 63.5 6.6 55 144-198 1-59 (143)
202 KOG1663 O-methyltransferase [S 97.7 0.00032 7E-09 64.7 9.7 96 122-223 54-155 (237)
203 PRK11933 yebU rRNA (cytosine-C 97.6 0.00022 4.8E-09 73.2 9.5 94 123-227 93-193 (470)
204 PF05219 DREV: DREV methyltran 97.6 0.00014 3.1E-09 68.3 6.9 72 118-194 66-142 (265)
205 PF01564 Spermine_synth: Sperm 97.6 0.00044 9.6E-09 65.2 9.9 75 141-226 76-159 (246)
206 COG0421 SpeE Spermidine syntha 97.5 0.00063 1.4E-08 65.4 9.7 72 143-225 78-157 (282)
207 PRK01544 bifunctional N5-gluta 97.5 0.00052 1.1E-08 71.3 9.4 78 140-227 346-427 (506)
208 KOG2899 Predicted methyltransf 97.4 0.00021 4.5E-09 66.4 5.3 47 140-186 57-105 (288)
209 PRK11760 putative 23S rRNA C24 97.4 0.00043 9.4E-09 67.8 7.7 69 140-225 210-278 (357)
210 PF01861 DUF43: Protein of unk 97.4 0.0014 3E-08 61.2 10.3 109 112-230 13-125 (243)
211 KOG3010 Methyltransferase [Gen 97.2 0.00066 1.4E-08 63.1 6.0 42 143-184 35-76 (261)
212 KOG2361 Predicted methyltransf 97.1 0.0014 3E-08 61.0 7.0 66 121-186 48-120 (264)
213 PF01728 FtsJ: FtsJ-like methy 97.1 0.0011 2.4E-08 59.1 5.9 75 141-226 23-100 (181)
214 PF00891 Methyltransf_2: O-met 97.0 0.0053 1.1E-07 57.3 10.0 62 131-197 90-153 (241)
215 COG0144 Sun tRNA and rRNA cyto 97.0 0.0039 8.5E-08 62.0 9.5 97 123-228 138-240 (355)
216 PF02527 GidB: rRNA small subu 97.0 0.0043 9.4E-08 56.0 8.8 67 144-223 51-121 (184)
217 COG0357 GidB Predicted S-adeno 97.0 0.0049 1.1E-07 56.9 9.3 103 127-242 52-162 (215)
218 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0046 9.9E-08 59.6 9.4 96 125-230 69-169 (283)
219 PRK00536 speE spermidine synth 96.9 0.0062 1.3E-07 58.0 10.1 73 140-227 71-149 (262)
220 PF04816 DUF633: Family of unk 96.9 0.0036 7.9E-08 57.4 8.1 55 145-199 1-60 (205)
221 PF01795 Methyltransf_5: MraW 96.9 0.0052 1.1E-07 59.7 9.2 93 127-225 6-101 (310)
222 cd00315 Cyt_C5_DNA_methylase C 96.9 0.003 6.5E-08 60.5 7.4 74 144-231 2-76 (275)
223 PHA01634 hypothetical protein 96.8 0.0025 5.3E-08 53.7 5.5 45 141-185 28-73 (156)
224 COG3897 Predicted methyltransf 96.8 0.0021 4.6E-08 58.0 5.4 88 128-230 66-156 (218)
225 PF03291 Pox_MCEL: mRNA cappin 96.8 0.0053 1.1E-07 60.4 8.7 80 141-226 62-154 (331)
226 PF01555 N6_N4_Mtase: DNA meth 96.6 0.0065 1.4E-07 55.2 7.4 58 123-181 174-231 (231)
227 PRK11524 putative methyltransf 96.6 0.0069 1.5E-07 58.2 7.9 59 125-184 193-251 (284)
228 COG0275 Predicted S-adenosylme 96.6 0.02 4.4E-07 55.1 10.7 78 124-201 6-87 (314)
229 KOG2940 Predicted methyltransf 96.3 0.0083 1.8E-07 55.5 6.2 78 141-232 72-152 (325)
230 PF00145 DNA_methylase: C-5 cy 96.3 0.012 2.6E-07 56.7 7.5 68 144-226 2-70 (335)
231 TIGR03439 methyl_EasF probable 96.3 0.024 5.2E-07 55.5 9.3 68 130-199 67-144 (319)
232 KOG1501 Arginine N-methyltrans 96.2 0.0082 1.8E-07 60.2 5.5 53 144-196 69-125 (636)
233 PRK13699 putative methylase; P 96.2 0.021 4.4E-07 53.3 8.0 61 124-185 147-207 (227)
234 PF04445 SAM_MT: Putative SAM- 96.1 0.011 2.3E-07 55.2 5.9 86 132-228 64-162 (234)
235 COG1189 Predicted rRNA methyla 96.1 0.03 6.4E-07 52.2 8.5 83 133-228 70-155 (245)
236 PF04989 CmcI: Cephalosporin h 95.9 0.013 2.7E-07 53.8 5.3 85 117-201 8-99 (206)
237 TIGR00675 dcm DNA-methyltransf 95.7 0.019 4.1E-07 56.1 5.9 67 145-226 1-68 (315)
238 COG0293 FtsJ 23S rRNA methylas 95.7 0.044 9.5E-07 50.2 7.6 76 140-228 44-122 (205)
239 PF06080 DUF938: Protein of un 95.6 0.051 1.1E-06 49.7 7.9 58 142-199 26-88 (204)
240 PF09243 Rsm22: Mitochondrial 95.6 0.041 9E-07 52.7 7.7 56 132-187 24-82 (274)
241 PF07091 FmrO: Ribosomal RNA m 95.6 0.036 7.8E-07 52.1 7.0 59 141-199 105-166 (251)
242 COG3129 Predicted SAM-dependen 95.5 0.041 8.9E-07 51.1 6.9 100 128-234 59-170 (292)
243 COG4262 Predicted spermidine s 95.5 0.046 9.9E-07 53.9 7.3 77 140-227 288-375 (508)
244 KOG1975 mRNA cap methyltransfe 95.4 0.033 7.1E-07 54.1 5.9 82 139-226 115-205 (389)
245 PF05891 Methyltransf_PK: AdoM 95.3 0.05 1.1E-06 50.2 6.8 72 141-224 55-129 (218)
246 COG2384 Predicted SAM-dependen 95.2 0.091 2E-06 48.5 8.1 59 141-199 16-79 (226)
247 PF01269 Fibrillarin: Fibrilla 95.0 0.23 4.9E-06 46.1 10.2 88 137-233 69-159 (229)
248 PLN02232 ubiquinone biosynthes 94.9 0.047 1E-06 47.8 5.3 47 167-225 1-52 (160)
249 PF12147 Methyltransf_20: Puta 94.8 0.47 1E-05 45.7 11.9 60 140-199 134-200 (311)
250 COG0270 Dcm Site-specific DNA 94.6 0.1 2.2E-06 51.3 7.3 71 143-226 4-76 (328)
251 TIGR00497 hsdM type I restrict 94.3 0.17 3.8E-06 52.6 8.6 103 116-229 191-305 (501)
252 PRK10458 DNA cytosine methylas 94.3 0.29 6.3E-06 50.4 10.0 84 143-226 89-178 (467)
253 COG0500 SmtA SAM-dependent met 94.2 0.19 4E-06 40.4 6.9 53 145-198 52-109 (257)
254 KOG4058 Uncharacterized conser 94.0 0.11 2.3E-06 45.2 5.0 74 129-202 60-137 (199)
255 KOG3987 Uncharacterized conser 93.9 0.024 5.3E-07 51.7 1.1 75 108-182 76-153 (288)
256 PF04672 Methyltransf_19: S-ad 93.8 0.19 4.1E-06 47.9 7.0 74 127-200 53-134 (267)
257 KOG4589 Cell division protein 93.7 0.21 4.6E-06 45.1 6.6 76 140-228 68-147 (232)
258 PF02636 Methyltransf_28: Puta 93.6 0.27 5.8E-06 46.3 7.7 44 142-185 19-72 (252)
259 PF03059 NAS: Nicotianamine sy 93.6 0.5 1.1E-05 45.3 9.5 59 142-200 121-187 (276)
260 COG1565 Uncharacterized conser 93.4 0.39 8.6E-06 47.5 8.5 64 122-185 47-131 (370)
261 KOG2912 Predicted DNA methylas 93.3 0.19 4E-06 48.9 6.1 80 146-230 107-191 (419)
262 KOG1227 Putative methyltransfe 93.0 0.029 6.3E-07 53.9 0.1 59 141-199 194-257 (351)
263 PF13578 Methyltransf_24: Meth 92.9 0.071 1.5E-06 42.9 2.3 69 146-225 1-77 (106)
264 KOG2651 rRNA adenine N-6-methy 92.9 0.31 6.6E-06 48.5 6.9 42 140-181 152-194 (476)
265 KOG3115 Methyltransferase-like 92.4 0.13 2.8E-06 46.9 3.4 57 143-199 62-129 (249)
266 PF05148 Methyltransf_8: Hypot 92.4 0.39 8.5E-06 44.2 6.5 72 130-227 60-132 (219)
267 PF11968 DUF3321: Putative met 92.3 0.23 4.9E-06 45.8 5.0 106 77-227 7-114 (219)
268 KOG2078 tRNA modification enzy 92.3 0.099 2.2E-06 52.5 2.8 61 139-199 247-311 (495)
269 COG1568 Predicted methyltransf 92.2 0.31 6.7E-06 46.6 5.8 118 101-230 107-234 (354)
270 PF07757 AdoMet_MTase: Predict 92.0 0.22 4.8E-06 40.9 4.1 47 126-172 39-89 (112)
271 COG1889 NOP1 Fibrillarin-like 91.8 0.39 8.4E-06 43.9 5.7 81 137-226 72-154 (231)
272 PF11599 AviRa: RRNA methyltra 91.7 0.39 8.4E-06 44.3 5.6 45 140-184 50-98 (246)
273 PF03141 Methyltransf_29: Puta 91.7 0.33 7.1E-06 49.9 5.7 56 127-182 99-161 (506)
274 COG3510 CmcI Cephalosporin hyd 91.6 0.8 1.7E-05 41.6 7.4 85 116-203 44-134 (237)
275 KOG1122 tRNA and rRNA cytosine 91.4 0.51 1.1E-05 47.5 6.6 86 133-228 233-323 (460)
276 PF03686 UPF0146: Uncharacteri 91.4 0.94 2E-05 38.3 7.2 84 129-235 4-89 (127)
277 KOG1201 Hydroxysteroid 17-beta 91.3 3.2 7E-05 40.1 11.7 98 141-240 37-144 (300)
278 PF01739 CheR: CheR methyltran 90.6 0.53 1.1E-05 42.9 5.5 41 141-181 31-82 (196)
279 PF07942 N2227: N2227-like pro 90.6 0.69 1.5E-05 44.2 6.5 38 141-178 56-93 (270)
280 PF02254 TrkA_N: TrkA-N domain 90.3 1.1 2.4E-05 36.2 6.9 64 150-226 4-71 (116)
281 KOG1709 Guanidinoacetate methy 90.2 1.9 4.1E-05 40.0 8.6 82 130-222 91-174 (271)
282 KOG3045 Predicted RNA methylas 89.7 0.54 1.2E-05 44.6 4.9 72 128-227 166-238 (325)
283 PRK12829 short chain dehydroge 89.6 4.2 9E-05 37.5 10.9 83 140-226 9-95 (264)
284 PRK10611 chemotaxis methyltran 89.6 1.3 2.7E-05 42.9 7.5 61 122-182 95-166 (287)
285 COG0863 DNA modification methy 89.1 1.5 3.3E-05 41.7 7.7 60 125-185 207-266 (302)
286 KOG3924 Putative protein methy 88.7 0.69 1.5E-05 46.2 5.0 78 125-202 176-266 (419)
287 KOG3178 Hydroxyindole-O-methyl 88.7 1 2.2E-05 44.4 6.1 55 142-198 178-232 (342)
288 PF10237 N6-adenineMlase: Prob 88.6 1.6 3.5E-05 38.5 6.9 99 119-235 2-103 (162)
289 PRK05867 short chain dehydroge 88.4 3.8 8.2E-05 37.8 9.7 83 141-226 8-95 (253)
290 KOG2198 tRNA cytosine-5-methyl 88.3 1.3 2.9E-05 43.9 6.7 90 135-227 149-246 (375)
291 PF05206 TRM13: Methyltransfer 88.1 2.7 6E-05 39.9 8.6 72 131-203 8-89 (259)
292 PRK08340 glucose-1-dehydrogena 87.8 4.1 8.9E-05 37.8 9.6 80 144-226 2-85 (259)
293 KOG2352 Predicted spermine/spe 87.7 2.5 5.5E-05 43.4 8.5 63 141-203 47-112 (482)
294 PRK06172 short chain dehydroge 87.7 4.8 0.0001 37.0 9.9 83 141-226 6-93 (253)
295 COG1748 LYS9 Saccharopine dehy 87.5 3.2 6.9E-05 41.8 9.0 89 143-242 2-93 (389)
296 PRK08339 short chain dehydroge 87.4 5.2 0.00011 37.4 10.1 82 141-225 7-93 (263)
297 PRK07024 short chain dehydroge 87.3 5.4 0.00012 36.9 10.1 80 143-225 3-86 (257)
298 PLN02253 xanthoxin dehydrogena 87.3 5.2 0.00011 37.5 10.1 82 141-225 17-102 (280)
299 PRK07063 short chain dehydroge 87.1 5.5 0.00012 36.8 10.0 82 141-225 6-94 (260)
300 PRK07454 short chain dehydroge 86.9 7.1 0.00015 35.6 10.5 83 141-226 5-92 (241)
301 PRK06194 hypothetical protein; 86.8 5.6 0.00012 37.4 10.0 83 141-226 5-92 (287)
302 PRK05866 short chain dehydroge 86.5 5.9 0.00013 37.9 10.1 83 141-225 39-125 (293)
303 COG1352 CheR Methylase of chem 86.5 1.9 4E-05 41.3 6.4 40 142-181 97-147 (268)
304 PRK06200 2,3-dihydroxy-2,3-dih 86.5 6 0.00013 36.7 9.9 81 141-226 5-89 (263)
305 PRK09072 short chain dehydroge 86.3 7 0.00015 36.2 10.2 84 141-227 4-90 (263)
306 PRK06124 gluconate 5-dehydroge 86.2 7 0.00015 36.0 10.2 83 141-226 10-97 (256)
307 PRK12823 benD 1,6-dihydroxycyc 86.2 7.1 0.00015 36.0 10.2 81 141-225 7-92 (260)
308 PRK08589 short chain dehydroge 86.1 7 0.00015 36.6 10.2 82 141-226 5-91 (272)
309 PRK07677 short chain dehydroge 86.0 6.3 0.00014 36.3 9.7 81 142-225 1-86 (252)
310 COG1064 AdhP Zn-dependent alco 86.0 5.5 0.00012 39.4 9.6 46 137-182 162-209 (339)
311 PRK06139 short chain dehydroge 85.9 6 0.00013 38.7 9.9 84 141-226 6-93 (330)
312 PRK07478 short chain dehydroge 85.8 7.4 0.00016 35.8 10.1 83 141-226 5-92 (254)
313 PRK07231 fabG 3-ketoacyl-(acyl 85.6 7.6 0.00016 35.4 10.0 84 141-227 4-91 (251)
314 PF04378 RsmJ: Ribosomal RNA s 85.6 1.6 3.6E-05 41.1 5.5 79 146-232 62-140 (245)
315 PRK07890 short chain dehydroge 85.6 7.3 0.00016 35.8 10.0 82 141-225 4-90 (258)
316 PRK08226 short chain dehydroge 85.4 7.6 0.00016 35.9 10.0 83 141-226 5-91 (263)
317 PRK07035 short chain dehydroge 85.3 7.6 0.00017 35.6 9.9 83 141-226 7-94 (252)
318 PRK05872 short chain dehydroge 85.3 7.9 0.00017 36.9 10.3 83 141-226 8-94 (296)
319 PRK05876 short chain dehydroge 85.1 8.4 0.00018 36.3 10.3 84 141-226 5-92 (275)
320 PRK08217 fabG 3-ketoacyl-(acyl 84.9 8.8 0.00019 34.9 10.1 82 141-226 4-91 (253)
321 PRK07109 short chain dehydroge 84.7 7.9 0.00017 37.8 10.2 84 141-226 7-94 (334)
322 PRK06138 short chain dehydroge 84.7 8.9 0.00019 35.0 10.0 83 141-226 4-90 (252)
323 PRK07533 enoyl-(acyl carrier p 84.7 6.7 0.00015 36.5 9.3 83 141-225 9-96 (258)
324 PRK08643 acetoin reductase; Va 84.5 8.4 0.00018 35.4 9.8 84 142-227 2-89 (256)
325 PRK05854 short chain dehydroge 84.4 9.1 0.0002 36.9 10.3 83 141-225 13-101 (313)
326 PRK08277 D-mannonate oxidoredu 84.4 8.7 0.00019 35.9 10.0 83 141-226 9-96 (278)
327 PRK07097 gluconate 5-dehydroge 84.3 9.1 0.0002 35.5 10.0 85 141-227 9-97 (265)
328 PRK07523 gluconate 5-dehydroge 84.2 9.4 0.0002 35.1 10.0 84 141-227 9-97 (255)
329 PRK05786 fabG 3-ketoacyl-(acyl 84.2 9.7 0.00021 34.4 10.0 59 141-200 4-66 (238)
330 PRK06505 enoyl-(acyl carrier p 84.2 7.1 0.00015 36.8 9.3 82 141-225 6-93 (271)
331 PRK09242 tropinone reductase; 84.0 9 0.0002 35.3 9.8 85 141-227 8-98 (257)
332 COG0569 TrkA K+ transport syst 84.0 7.7 0.00017 35.9 9.2 72 144-227 2-76 (225)
333 PRK08267 short chain dehydroge 83.9 9.7 0.00021 35.1 10.0 81 143-226 2-86 (260)
334 PRK13394 3-hydroxybutyrate deh 83.6 9.7 0.00021 35.0 9.9 84 141-226 6-93 (262)
335 PRK08862 short chain dehydroge 83.5 9.3 0.0002 35.0 9.5 82 141-225 4-91 (227)
336 TIGR03206 benzo_BadH 2-hydroxy 83.5 12 0.00026 34.1 10.3 83 141-227 2-90 (250)
337 PRK07814 short chain dehydroge 83.5 10 0.00023 35.2 10.0 82 141-225 9-95 (263)
338 KOG2920 Predicted methyltransf 83.4 1.2 2.6E-05 42.7 3.6 51 127-177 99-153 (282)
339 PRK06113 7-alpha-hydroxysteroi 83.4 11 0.00023 34.8 10.0 83 141-226 10-97 (255)
340 PRK06949 short chain dehydroge 83.3 11 0.00025 34.5 10.1 82 141-226 8-95 (258)
341 COG2961 ComJ Protein involved 83.3 4.7 0.0001 38.1 7.3 79 146-232 93-171 (279)
342 PRK12481 2-deoxy-D-gluconate 3 83.2 8.4 0.00018 35.6 9.2 80 141-225 7-91 (251)
343 PRK08690 enoyl-(acyl carrier p 83.1 8.7 0.00019 35.8 9.3 83 141-225 5-92 (261)
344 PRK08415 enoyl-(acyl carrier p 83.1 9.4 0.0002 36.1 9.7 84 141-226 4-92 (274)
345 PRK07062 short chain dehydroge 82.8 10 0.00022 35.1 9.7 83 141-226 7-96 (265)
346 PRK08265 short chain dehydroge 82.8 10 0.00022 35.2 9.7 81 141-226 5-89 (261)
347 PRK07984 enoyl-(acyl carrier p 82.7 9.8 0.00021 35.7 9.6 84 141-226 5-93 (262)
348 PRK07791 short chain dehydroge 82.7 11 0.00023 35.8 10.0 82 141-225 5-100 (286)
349 PRK12939 short chain dehydroge 82.6 13 0.00028 33.8 10.2 82 141-225 6-92 (250)
350 PRK08159 enoyl-(acyl carrier p 82.6 9.6 0.00021 35.9 9.5 83 141-225 9-96 (272)
351 PLN02780 ketoreductase/ oxidor 82.5 9.5 0.00021 37.1 9.6 58 141-198 52-115 (320)
352 PRK08945 putative oxoacyl-(acy 82.5 11 0.00024 34.4 9.7 84 140-225 10-100 (247)
353 PRK08303 short chain dehydroge 82.4 9.3 0.0002 36.9 9.5 83 141-225 7-103 (305)
354 PRK06079 enoyl-(acyl carrier p 82.4 9.2 0.0002 35.4 9.2 82 141-226 6-92 (252)
355 PRK05650 short chain dehydroge 82.4 11 0.00025 35.0 9.9 81 144-226 2-86 (270)
356 PF07279 DUF1442: Protein of u 82.4 9.5 0.00021 35.3 8.8 73 126-198 26-107 (218)
357 TIGR03325 BphB_TodD cis-2,3-di 81.9 11 0.00023 35.0 9.5 80 141-225 4-87 (262)
358 PRK08085 gluconate 5-dehydroge 81.9 13 0.00028 34.2 10.0 83 141-226 8-95 (254)
359 KOG1596 Fibrillarin and relate 81.9 3.2 7E-05 39.1 5.6 84 136-228 151-237 (317)
360 PRK06603 enoyl-(acyl carrier p 81.7 12 0.00025 35.0 9.7 84 141-226 7-95 (260)
361 PRK07326 short chain dehydroge 81.7 15 0.00032 33.2 10.2 59 141-200 5-67 (237)
362 KOG2360 Proliferation-associat 81.7 1.5 3.2E-05 43.8 3.5 69 131-199 203-276 (413)
363 PRK06500 short chain dehydroge 81.4 13 0.00028 33.8 9.7 83 141-227 5-90 (249)
364 PRK06181 short chain dehydroge 81.3 14 0.00031 34.0 10.0 80 143-225 2-86 (263)
365 PF06962 rRNA_methylase: Putat 81.3 4.9 0.00011 34.7 6.2 53 165-227 1-56 (140)
366 PRK06935 2-deoxy-D-gluconate 3 81.3 14 0.00029 34.1 9.9 82 141-226 14-100 (258)
367 PF05050 Methyltransf_21: Meth 81.1 3 6.5E-05 35.5 5.0 36 147-182 1-42 (167)
368 PRK06196 oxidoreductase; Provi 81.0 13 0.00028 35.7 9.9 80 141-226 25-108 (315)
369 PRK07067 sorbitol dehydrogenas 81.0 14 0.00031 33.9 9.9 80 141-225 5-88 (257)
370 KOG0024 Sorbitol dehydrogenase 80.9 4.7 0.0001 39.6 6.6 51 132-183 160-213 (354)
371 PRK09496 trkA potassium transp 80.9 16 0.00034 37.0 11.0 70 125-199 212-287 (453)
372 PF02086 MethyltransfD12: D12 80.7 2.6 5.6E-05 39.3 4.8 56 129-184 8-63 (260)
373 PRK08213 gluconate 5-dehydroge 80.6 15 0.00033 33.7 10.0 83 141-227 11-99 (259)
374 PRK03659 glutathione-regulated 80.5 4.2 9.1E-05 43.4 6.8 69 143-226 401-473 (601)
375 PRK07453 protochlorophyllide o 80.5 16 0.00035 35.1 10.5 83 141-225 5-91 (322)
376 PF11899 DUF3419: Protein of u 80.3 4.4 9.6E-05 40.7 6.5 51 134-184 28-78 (380)
377 PRK12826 3-ketoacyl-(acyl-carr 80.3 17 0.00036 33.0 10.0 83 141-227 5-93 (251)
378 PRK07774 short chain dehydroge 80.2 16 0.00035 33.3 9.9 83 141-227 5-93 (250)
379 PRK07831 short chain dehydroge 79.9 16 0.00035 33.7 9.9 83 141-226 16-106 (262)
380 PRK06182 short chain dehydroge 79.9 15 0.00032 34.3 9.7 78 142-227 3-84 (273)
381 PRK10669 putative cation:proto 79.8 4.7 0.0001 42.5 6.8 51 143-200 418-472 (558)
382 PF00106 adh_short: short chai 79.6 10 0.00023 32.1 8.0 81 144-226 2-89 (167)
383 PRK07904 short chain dehydroge 79.3 15 0.00033 34.0 9.6 85 140-227 6-97 (253)
384 PRK07889 enoyl-(acyl carrier p 79.3 11 0.00024 35.0 8.6 81 141-225 6-93 (256)
385 TIGR01832 kduD 2-deoxy-D-gluco 79.0 16 0.00035 33.3 9.5 82 141-226 4-89 (248)
386 PRK05993 short chain dehydroge 79.0 15 0.00032 34.5 9.4 78 142-226 4-85 (277)
387 COG1867 TRM1 N2,N2-dimethylgua 78.9 7.7 0.00017 38.7 7.5 58 142-199 53-114 (380)
388 PRK06197 short chain dehydroge 78.9 16 0.00035 34.8 9.8 82 141-225 15-103 (306)
389 PRK06720 hypothetical protein; 78.9 24 0.00052 31.0 10.1 83 141-226 15-102 (169)
390 PRK12429 3-hydroxybutyrate deh 78.8 19 0.00042 32.8 10.0 83 141-226 3-90 (258)
391 PRK07576 short chain dehydroge 78.8 18 0.0004 33.6 9.9 81 141-225 8-94 (264)
392 PRK05717 oxidoreductase; Valid 78.6 17 0.00037 33.4 9.6 82 141-227 9-94 (255)
393 PRK06125 short chain dehydroge 78.6 17 0.00038 33.4 9.7 79 141-225 6-89 (259)
394 PTZ00357 methyltransferase; Pr 78.6 4.5 9.8E-05 43.5 6.1 81 144-225 703-800 (1072)
395 KOG0822 Protein kinase inhibit 78.6 4.3 9.4E-05 42.2 5.8 71 143-225 369-447 (649)
396 COG1063 Tdh Threonine dehydrog 78.5 6.4 0.00014 38.9 7.0 62 123-184 148-214 (350)
397 PF07669 Eco57I: Eco57I restri 78.3 1.1 2.5E-05 36.4 1.4 15 217-231 2-16 (106)
398 TIGR01963 PHB_DH 3-hydroxybuty 78.2 19 0.00041 32.8 9.7 80 143-225 2-86 (255)
399 PRK08251 short chain dehydroge 78.1 20 0.00044 32.6 9.9 80 142-225 2-89 (248)
400 cd00401 AdoHcyase S-adenosyl-L 78.1 8.6 0.00019 39.1 7.9 61 121-181 180-243 (413)
401 PRK07825 short chain dehydroge 77.9 19 0.00041 33.5 9.8 80 141-225 4-86 (273)
402 PRK07666 fabG 3-ketoacyl-(acyl 77.7 22 0.00048 32.2 10.0 83 141-226 6-93 (239)
403 cd08283 FDH_like_1 Glutathione 77.4 8.2 0.00018 38.4 7.5 49 135-183 178-229 (386)
404 PRK07074 short chain dehydroge 76.8 25 0.00054 32.2 10.2 79 143-225 3-85 (257)
405 PRK08628 short chain dehydroge 76.7 22 0.00047 32.7 9.7 83 141-226 6-92 (258)
406 COG4221 Short-chain alcohol de 76.5 23 0.00051 33.4 9.6 81 141-225 5-89 (246)
407 PRK06180 short chain dehydroge 76.5 20 0.00043 33.6 9.6 80 142-226 4-87 (277)
408 PRK08594 enoyl-(acyl carrier p 76.5 15 0.00033 34.1 8.6 83 141-226 6-96 (257)
409 PRK07792 fabG 3-ketoacyl-(acyl 76.4 19 0.00042 34.5 9.6 82 141-225 11-97 (306)
410 PRK06841 short chain dehydroge 76.3 24 0.00052 32.3 9.8 83 141-227 14-99 (255)
411 PRK06057 short chain dehydroge 76.2 20 0.00044 32.9 9.4 79 141-225 6-87 (255)
412 COG0300 DltE Short-chain dehyd 76.1 30 0.00064 33.1 10.4 89 141-231 5-98 (265)
413 PRK06701 short chain dehydroge 75.9 21 0.00046 33.9 9.6 84 141-226 45-133 (290)
414 PRK07102 short chain dehydroge 75.7 20 0.00044 32.6 9.2 78 143-226 2-85 (243)
415 COG1255 Uncharacterized protei 75.6 6.6 0.00014 32.7 5.0 50 143-201 15-65 (129)
416 PRK05855 short chain dehydroge 75.5 20 0.00043 37.1 10.1 83 141-225 314-400 (582)
417 PRK03562 glutathione-regulated 75.3 6.8 0.00015 42.0 6.6 54 143-201 401-456 (621)
418 PRK06914 short chain dehydroge 75.2 28 0.00062 32.4 10.2 82 142-226 3-90 (280)
419 PRK09291 short chain dehydroge 75.2 20 0.00043 32.8 9.0 75 143-225 3-81 (257)
420 PRK05875 short chain dehydroge 75.0 28 0.0006 32.4 10.0 81 141-225 6-94 (276)
421 PRK08416 7-alpha-hydroxysteroi 74.9 27 0.00059 32.2 9.9 83 141-225 7-95 (260)
422 PRK09186 flagellin modificatio 74.8 28 0.0006 31.8 9.9 82 141-225 3-91 (256)
423 PF02005 TRM: N2,N2-dimethylgu 74.0 9.5 0.00021 38.3 6.9 82 142-235 50-138 (377)
424 PLN03209 translocon at the inn 74.0 22 0.00048 37.8 9.7 81 136-226 74-168 (576)
425 PRK08324 short chain dehydroge 73.7 23 0.0005 38.3 10.2 83 141-226 421-507 (681)
426 KOG2793 Putative N2,N2-dimethy 73.7 12 0.00026 35.3 7.1 33 141-173 86-119 (248)
427 PRK12384 sorbitol-6-phosphate 73.6 29 0.00063 31.8 9.7 80 142-225 2-89 (259)
428 TIGR02415 23BDH acetoin reduct 73.3 29 0.00063 31.6 9.6 80 144-227 2-87 (254)
429 PRK12748 3-ketoacyl-(acyl-carr 73.1 30 0.00064 31.8 9.6 83 141-226 4-104 (256)
430 TIGR00507 aroE shikimate 5-deh 73.1 32 0.00069 32.5 10.0 44 140-184 115-161 (270)
431 PRK06997 enoyl-(acyl carrier p 73.0 22 0.00048 33.1 8.8 83 141-225 5-92 (260)
432 KOG2352 Predicted spermine/spe 72.7 3.4 7.3E-05 42.5 3.3 79 141-224 295-377 (482)
433 PF12242 Eno-Rase_NADH_b: NAD( 72.6 13 0.00027 28.7 5.6 35 139-173 36-74 (78)
434 PRK07806 short chain dehydroge 72.4 34 0.00074 31.0 9.8 84 141-226 5-93 (248)
435 KOG1562 Spermidine synthase [A 72.3 5.1 0.00011 38.8 4.2 76 139-224 119-202 (337)
436 PRK05599 hypothetical protein; 72.2 30 0.00065 31.8 9.4 80 144-226 2-86 (246)
437 TIGR01289 LPOR light-dependent 72.1 35 0.00076 32.8 10.2 83 142-226 3-90 (314)
438 PRK09424 pntA NAD(P) transhydr 72.1 9 0.0002 40.1 6.4 44 139-182 162-207 (509)
439 PRK10538 malonic semialdehyde 71.8 35 0.00077 31.2 9.8 76 144-225 2-82 (248)
440 PRK07201 short chain dehydroge 71.7 27 0.00057 37.2 10.1 83 142-227 371-458 (657)
441 PRK06114 short chain dehydroge 71.1 37 0.00079 31.2 9.8 82 141-226 7-95 (254)
442 PRK06484 short chain dehydroge 70.8 29 0.00064 35.7 9.9 80 141-225 268-351 (520)
443 PRK12743 oxidoreductase; Provi 70.2 38 0.00082 31.1 9.7 81 142-226 2-89 (256)
444 PF13561 adh_short_C2: Enoyl-( 70.1 13 0.00028 34.0 6.5 73 151-226 7-82 (241)
445 PRK08278 short chain dehydroge 70.0 37 0.0008 31.7 9.6 83 141-226 5-99 (273)
446 cd08254 hydroxyacyl_CoA_DH 6-h 69.8 16 0.00035 34.8 7.3 45 137-181 161-207 (338)
447 KOG1331 Predicted methyltransf 69.7 2.2 4.7E-05 41.0 1.1 56 141-202 45-100 (293)
448 PRK06198 short chain dehydroge 69.5 36 0.00078 31.2 9.3 82 141-225 5-92 (260)
449 PRK05565 fabG 3-ketoacyl-(acyl 69.3 43 0.00094 30.1 9.7 82 142-227 5-93 (247)
450 PRK08993 2-deoxy-D-gluconate 3 69.2 38 0.00082 31.1 9.4 80 141-225 9-93 (253)
451 PF03721 UDPG_MGDP_dh_N: UDP-g 68.7 5.8 0.00013 35.6 3.6 38 144-181 2-41 (185)
452 KOG1205 Predicted dehydrogenas 68.7 30 0.00065 33.4 8.6 83 141-225 11-99 (282)
453 PRK06482 short chain dehydroge 68.5 43 0.00092 31.1 9.7 77 143-225 3-84 (276)
454 PRK06179 short chain dehydroge 68.4 30 0.00064 32.0 8.6 76 142-227 4-83 (270)
455 cd01078 NAD_bind_H4MPT_DH NADP 68.4 39 0.00084 30.1 9.0 78 141-227 27-107 (194)
456 PRK08063 enoyl-(acyl carrier p 68.4 42 0.00092 30.4 9.5 83 141-226 3-91 (250)
457 PRK06484 short chain dehydroge 68.1 33 0.00071 35.3 9.6 81 141-226 4-88 (520)
458 PRK13656 trans-2-enoyl-CoA red 67.9 60 0.0013 32.9 10.9 86 140-228 39-142 (398)
459 PRK12548 shikimate 5-dehydroge 67.8 48 0.001 31.8 10.0 56 141-197 125-188 (289)
460 TIGR03201 dearomat_had 6-hydro 67.7 20 0.00043 34.9 7.6 46 136-181 161-208 (349)
461 PLN02657 3,8-divinyl protochlo 67.6 24 0.00052 35.4 8.2 79 141-225 59-144 (390)
462 PRK05693 short chain dehydroge 67.4 38 0.00083 31.5 9.2 76 143-226 2-81 (274)
463 PRK06940 short chain dehydroge 67.0 49 0.0011 31.0 9.9 80 143-227 3-86 (275)
464 PRK05653 fabG 3-ketoacyl-(acyl 66.8 52 0.0011 29.4 9.7 82 142-227 5-92 (246)
465 TIGR02632 RhaD_aldol-ADH rhamn 66.8 42 0.0009 36.4 10.3 83 141-226 413-502 (676)
466 PRK08703 short chain dehydroge 66.6 47 0.001 30.0 9.4 58 141-198 5-67 (239)
467 PRK12859 3-ketoacyl-(acyl-carr 66.6 51 0.0011 30.3 9.8 84 141-227 5-106 (256)
468 PRK12828 short chain dehydroge 66.5 56 0.0012 29.1 9.8 83 141-227 6-92 (239)
469 cd05188 MDR Medium chain reduc 66.4 23 0.00051 32.1 7.3 44 139-182 132-177 (271)
470 PRK07775 short chain dehydroge 66.1 58 0.0013 30.4 10.1 80 142-225 10-95 (274)
471 PLN02989 cinnamyl-alcohol dehy 66.0 31 0.00067 33.0 8.4 59 141-200 4-69 (325)
472 PRK12827 short chain dehydroge 65.8 58 0.0012 29.3 9.8 83 141-226 5-96 (249)
473 PLN02896 cinnamyl-alcohol dehy 65.7 26 0.00057 34.1 7.9 58 141-199 9-70 (353)
474 PRK09135 pteridine reductase; 65.7 58 0.0013 29.3 9.8 83 141-226 5-94 (249)
475 PRK12744 short chain dehydroge 65.6 48 0.001 30.4 9.4 82 141-225 7-97 (257)
476 PRK08263 short chain dehydroge 65.5 56 0.0012 30.4 9.9 78 142-225 3-85 (275)
477 PRK06483 dihydromonapterin red 64.8 50 0.0011 29.8 9.2 78 142-225 2-82 (236)
478 PRK07985 oxidoreductase; Provi 64.7 51 0.0011 31.3 9.6 83 141-226 48-137 (294)
479 PRK09496 trkA potassium transp 64.7 36 0.00077 34.4 8.9 50 144-199 2-55 (453)
480 KOG1269 SAM-dependent methyltr 64.6 6.3 0.00014 39.4 3.3 66 139-204 108-177 (364)
481 PRK14106 murD UDP-N-acetylmura 64.5 39 0.00085 34.2 9.2 84 141-239 4-90 (450)
482 KOG1200 Mitochondrial/plastidi 64.0 31 0.00068 31.7 7.2 79 144-225 16-98 (256)
483 TIGR03366 HpnZ_proposed putati 64.0 25 0.00055 33.0 7.2 48 135-182 114-164 (280)
484 TIGR00561 pntA NAD(P) transhyd 63.9 66 0.0014 33.7 10.7 42 140-181 162-205 (511)
485 PRK12745 3-ketoacyl-(acyl-carr 63.8 64 0.0014 29.3 9.8 80 143-225 3-88 (256)
486 TIGR02822 adh_fam_2 zinc-bindi 63.8 28 0.0006 33.7 7.7 48 135-182 159-208 (329)
487 PRK07370 enoyl-(acyl carrier p 63.7 53 0.0011 30.4 9.3 85 141-227 5-97 (258)
488 PRK01747 mnmC bifunctional tRN 63.2 18 0.00038 39.0 6.7 32 142-173 58-103 (662)
489 PRK08309 short chain dehydroge 63.1 1.1E+02 0.0023 27.1 10.7 56 144-200 2-60 (177)
490 PRK09134 short chain dehydroge 63.0 73 0.0016 29.2 10.1 82 141-225 8-95 (258)
491 PRK07856 short chain dehydroge 62.9 48 0.001 30.3 8.8 75 141-225 5-83 (252)
492 PRK07832 short chain dehydroge 62.5 62 0.0013 30.0 9.6 80 144-226 2-87 (272)
493 TIGR00518 alaDH alanine dehydr 62.3 32 0.00069 34.4 7.9 43 141-183 166-210 (370)
494 PRK09880 L-idonate 5-dehydroge 62.2 32 0.0007 33.3 7.8 48 135-182 163-213 (343)
495 PRK08936 glucose-1-dehydrogena 61.9 73 0.0016 29.2 9.9 83 141-226 6-94 (261)
496 PRK06128 oxidoreductase; Provi 61.7 59 0.0013 30.9 9.4 83 141-226 54-143 (300)
497 PRK07417 arogenate dehydrogena 61.7 22 0.00047 33.8 6.3 39 144-182 2-42 (279)
498 PF03435 Saccharop_dh: Sacchar 61.5 40 0.00086 33.5 8.4 86 145-242 1-92 (386)
499 cd01065 NAD_bind_Shikimate_DH 61.5 97 0.0021 26.0 10.0 43 141-183 18-63 (155)
500 PLN02819 lysine-ketoglutarate 61.4 30 0.00065 39.4 8.1 88 142-241 569-672 (1042)
No 1
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-56 Score=418.61 Aligned_cols=234 Identities=35% Similarity=0.569 Sum_probs=218.0
Q ss_pred CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (371)
Q Consensus 114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~ 193 (371)
+++|++||||++|++++++|++.+++.+++.|||||||.|.+|..|++.+.+|+|||+|+++++.+++.+...+|+++++
T Consensus 3 k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 3 RPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred CCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999987667999999
Q ss_pred cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (371)
Q Consensus 194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls 273 (371)
||+++.++..+ ..++.||||+||+|+||++.+|+.....+..+++|+|||+|+|++ |.||++.||+||
T Consensus 83 ~DaLk~d~~~l-----------~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~-A~pgsk~Yg~Ls 150 (259)
T COG0030 83 GDALKFDFPSL-----------AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLV-AKPGSKDYGRLS 150 (259)
T ss_pred CchhcCcchhh-----------cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHh-CCCCCcccchhh
Confidence 99999987531 157899999999999999999999887778999999999999999 899999999999
Q ss_pred eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCCCchHHH
Q 017450 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPDDSALFV 353 (371)
Q Consensus 274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~~~~~~~ 353 (371)
|++|++++++.+++||+++|+|+|+|||+||++++++....+ ..+.+.|+++++++|+||||||.|+|+.+.. ....|
T Consensus 151 V~~q~~~~v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~-~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~-~~~~l 228 (259)
T COG0030 151 VLVQYYADVEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSP-VKDEEKFFKFVKAAFSQRRKTLRNNLKNLFG-LEEVL 228 (259)
T ss_pred hhhhheEEEEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCc-ccCHHHHHHHHHHHHhhhhHHHHHHHHhhhh-HHHHH
Confidence 999999999999999999999999999999999997765444 4578999999999999999999999999877 78889
Q ss_pred HHcCCCCc
Q 017450 354 HKNIILPS 361 (371)
Q Consensus 354 ~~~~~~~~ 361 (371)
..+||+|.
T Consensus 229 ~~~~i~~~ 236 (259)
T COG0030 229 EAAGIDPN 236 (259)
T ss_pred HhcCCCcc
Confidence 99999986
No 2
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=100.00 E-value=4.2e-50 Score=385.43 Aligned_cols=217 Identities=30% Similarity=0.458 Sum_probs=199.7
Q ss_pred hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---C
Q 017450 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I 186 (371)
Q Consensus 110 ~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~ 186 (371)
.++.+++|++||||++|+.++++|++.+.+.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++.. .
T Consensus 5 ~~~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~ 84 (294)
T PTZ00338 5 KSGMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA 84 (294)
T ss_pred cCCcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC
Confidence 3578999999999999999999999999999999999999999999999999988999999999999999998864 3
Q ss_pred CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCC
Q 017450 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266 (371)
Q Consensus 187 ~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~ 266 (371)
++++++++|+++.++ +.+|+||+|+||+|+++++.+++.....+..+++|+|||+|+|++ +.||+
T Consensus 85 ~~v~ii~~Dal~~~~--------------~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~-A~pg~ 149 (294)
T PTZ00338 85 SKLEVIEGDALKTEF--------------PYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLL-AQPGD 149 (294)
T ss_pred CcEEEEECCHhhhcc--------------cccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHh-cCCCC
Confidence 589999999998653 347899999999999999999998767788999999999999999 89999
Q ss_pred CCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS 344 (371)
Q Consensus 267 k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~ 344 (371)
+.||+|||++|++++++.+++||+++|+|+|+|||+||+|+|++.+. ..+.+.|+.+++.+|+||||+|.|+|++
T Consensus 150 k~y~~LSv~~q~~~~~~~~~~V~~~~F~P~PkVdSavv~l~~~~~~~---~~~~~~~~~~v~~~F~~rrK~l~~~l~~ 224 (294)
T PTZ00338 150 ELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVVRIEPKNPPP---DVDFEEWDGLLRICFSRKNKTLSAIFKT 224 (294)
T ss_pred cccCHHHHHHHHHhceEEEEEeCchhCCCCCCcEEEEEEEEECCCCC---CcCHHHHHHHHHHHHhhccHHHHHHhCc
Confidence 99999999999999999999999999999999999999999986532 2357889999999999999999998865
No 3
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=100.00 E-value=9.6e-48 Score=366.42 Aligned_cols=245 Identities=33% Similarity=0.515 Sum_probs=219.1
Q ss_pred HHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450 103 ATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 103 ~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~ 182 (371)
.+.+.+..++..+++.+||||++++.+++.+++.+...++++|||||||+|.+|..+++.+.+|+|+|+|++|++.++++
T Consensus 4 ~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~ 83 (272)
T PRK00274 4 RTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAET 83 (272)
T ss_pred hHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHh
Confidence 45567788899999999999999999999999999998999999999999999999999988999999999999999998
Q ss_pred hccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccC
Q 017450 183 FASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEP 262 (371)
Q Consensus 183 ~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a 262 (371)
+.. ++++++++|+.++++.+ -.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++ +
T Consensus 84 ~~~-~~v~~i~~D~~~~~~~~------------~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~-a 149 (272)
T PRK00274 84 FAE-DNLTIIEGDALKVDLSE------------LQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIV-A 149 (272)
T ss_pred hcc-CceEEEEChhhcCCHHH------------cCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHc-C
Confidence 754 68999999999986531 115899999999999999999997666678899999999999999 8
Q ss_pred CCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhc
Q 017450 263 SLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTT 342 (371)
Q Consensus 263 ~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l 342 (371)
.||++.|+++||++|++++++++++||+++|+|+|+|||+||+|+|++....+ ..+.+.|..|++.+|++|||+|.|+|
T Consensus 150 ~pg~~~y~~lSv~~~~~~~~~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l 228 (272)
T PRK00274 150 KPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVP-VKDEELFFRVVKAAFAQRRKTLRNNL 228 (272)
T ss_pred CCCCccccHHHHHHHHHcceEEEEEeChhhCCCCCCceEEEEEEEECCCCCCC-cccHHHHHHHHHHHHhchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997654322 23578899999999999999999999
Q ss_pred cCCCC---CchHHHHHcCCCCcc
Q 017450 343 SSFPD---DSALFVHKNIILPSI 362 (371)
Q Consensus 343 ~~~~~---~~~~~~~~~~~~~~~ 362 (371)
+.+.. .....|.++||+|+.
T Consensus 229 ~~~~~~~~~~~~~l~~~~~~~~~ 251 (272)
T PRK00274 229 KNLFGSKEKLEEALEAAGIDPNR 251 (272)
T ss_pred HhhccchHHHHHHHHHCCCCcCC
Confidence 98753 445679999999964
No 4
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=100.00 E-value=9.4e-46 Score=349.17 Aligned_cols=234 Identities=32% Similarity=0.510 Sum_probs=207.8
Q ss_pred CCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (371)
Q Consensus 113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi 192 (371)
+++++++||||++|+.+++.|++.+...++++|||||||+|.+|..|++.+.+|+++|+|+++++.+++++...++++++
T Consensus 1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~ 80 (253)
T TIGR00755 1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVI 80 (253)
T ss_pred CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEE
Confidence 36899999999999999999999999989999999999999999999999889999999999999999988655689999
Q ss_pred EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcce
Q 017450 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPI 272 (371)
Q Consensus 193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~L 272 (371)
++|+.+.++.. .+..+.|++|+||+++++++.+++. ...+..+++|+|+|+|+|++ +.||++.|+++
T Consensus 81 ~~D~~~~~~~~-----------~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~-a~pg~~~y~~l 147 (253)
T TIGR00755 81 EGDALKVDLPD-----------FPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLT-AKPGSKDYGRL 147 (253)
T ss_pred ECchhcCChhH-----------cCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHc-cCCCCCcccHH
Confidence 99999886531 0112599999999999999999995 33456799999999999999 89999999999
Q ss_pred eeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCCC--Cch
Q 017450 273 NIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFPD--DSA 350 (371)
Q Consensus 273 sv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~~--~~~ 350 (371)
|++++++++++++++||+++|+|+|+|||+||+|+|++.. ...+.+.|..+++.+|++|||+|.|+|+.+.. ...
T Consensus 148 sv~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~---~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~ 224 (253)
T TIGR00755 148 SVLVQYFANVEIVFKVPPSAFYPPPKVDSAVVRLIPREQF---PVKDIALFEKLLKAAFSQRRKTLRNNLKQLLKASKLE 224 (253)
T ss_pred HHHHHHHcceEEEEEEchhhCcCCCCeeEEEEEEEECCCC---CcccHHHHHHHHHHHHccchHHHHHHHhhhcchhHHH
Confidence 9999999999999999999999999999999999998754 23457889999999999999999999998764 344
Q ss_pred HHHHHcCCCCcc
Q 017450 351 LFVHKNIILPSI 362 (371)
Q Consensus 351 ~~~~~~~~~~~~ 362 (371)
..|.+.||+|+.
T Consensus 225 ~~l~~~~i~~~~ 236 (253)
T TIGR00755 225 EVLEQLGLDPTA 236 (253)
T ss_pred HHHHHCCcCCCC
Confidence 568888998864
No 5
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=341.61 Aligned_cols=213 Identities=33% Similarity=0.527 Sum_probs=194.2
Q ss_pred CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEE
Q 017450 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQ 193 (371)
Q Consensus 114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~ 193 (371)
+++|++||||++|++++++|++.+...++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...+++++++
T Consensus 2 ~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~ 81 (258)
T PRK14896 2 RMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIE 81 (258)
T ss_pred CCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence 58999999999999999999999998899999999999999999999998899999999999999999887656899999
Q ss_pred cccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCccee
Q 017450 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPIN 273 (371)
Q Consensus 194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Ls 273 (371)
+|+.++++ +.+|.||+|+||+++++++.+++.. .+..+++|+|+|+|+|++ +.||++.||++|
T Consensus 82 ~D~~~~~~--------------~~~d~Vv~NlPy~i~s~~~~~l~~~--~~~~~~l~~q~e~A~rl~-a~~g~~~yg~ls 144 (258)
T PRK14896 82 GDALKVDL--------------PEFNKVVSNLPYQISSPITFKLLKH--GFEPAVLMYQKEFAERMV-AKPGTKEYGRLS 144 (258)
T ss_pred eccccCCc--------------hhceEEEEcCCcccCcHHHHHHHhh--ccceeEEEeeHHHHHHhc-CCCCCccccHHH
Confidence 99998754 2369999999999999999988863 345689999999999999 899999999999
Q ss_pred eeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCC
Q 017450 274 IFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSF 345 (371)
Q Consensus 274 v~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~ 345 (371)
++.+++++++.++.+++.+|+|+|+|||+||+|++++. ..+ ..+.+.|..+++.+|+||||+|.|+|+.+
T Consensus 145 v~~~~~~~~~~~~~v~~~~F~P~PkV~s~vi~l~~~~~-~~~-~~~~~~~~~~~~~~F~~rrk~l~~~l~~~ 214 (258)
T PRK14896 145 VMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTPREP-KYE-VYDEDFFDDFVKALFQHRRKTLRNALKNS 214 (258)
T ss_pred HHHHHHeeeEEEEEeChHhCCCCCCceEEEEEEEECCC-CCC-CchHHHHHHHHHHHHccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999863 222 33567899999999999999999999886
No 6
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=100.00 E-value=8.3e-45 Score=344.44 Aligned_cols=241 Identities=32% Similarity=0.518 Sum_probs=208.3
Q ss_pred CCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450 113 RFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (371)
Q Consensus 113 ~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi 192 (371)
.++++++||||++|+++++.|++.+.+.+++.|||||||+|.+|..|++.+.+|++||+|+.+++.+++.+...++++++
T Consensus 2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi 81 (262)
T PF00398_consen 2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVI 81 (262)
T ss_dssp -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEE
T ss_pred CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceee
Confidence 36889999999999999999999999999999999999999999999999999999999999999999998867799999
Q ss_pred EcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCc-hhHHHHHhhhhHHhhhccCCCCCCCCcc
Q 017450 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDI-FSEVVLLLQEETALRLVEPSLRTSEYRP 271 (371)
Q Consensus 193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~-~~~~~lmvQke~a~rl~~a~pg~k~Yg~ 271 (371)
++|+++++.... .......||||+||+++++++.+++..... ...+++|+|+|+|+|++ +.||++.|++
T Consensus 82 ~~D~l~~~~~~~---------~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~-a~pg~~~~~~ 151 (262)
T PF00398_consen 82 NGDFLKWDLYDL---------LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLL-AKPGSKRYSR 151 (262)
T ss_dssp ES-TTTSCGGGH---------CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHH-TSTTSTTCSH
T ss_pred ecchhccccHHh---------hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhcc-CCCCCCccch
Confidence 999999876531 124678999999999999999999873222 47899999999999999 8999999999
Q ss_pred eeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccCCC-CCch
Q 017450 272 INIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSSFP-DDSA 350 (371)
Q Consensus 272 Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~~~-~~~~ 350 (371)
+|+++|++++++.++.+|+++|+|+|+|||+||+++|++.+..+ ..+.+.|..+++.+|.+|||++.|+|+.+. ....
T Consensus 152 lsv~~q~~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~-~~~~~~~~~~~~~~F~~rrk~l~~~L~~~~~~~~~ 230 (262)
T PF00398_consen 152 LSVLAQAFFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIP-PEDMDAFEYFVRQLFSQRRKTLRNSLKSLFPGEQL 230 (262)
T ss_dssp HHHHHHHHEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS--CSHHHHHHHHHHHHHTTTTSBHHHHTTCTHHHHHH
T ss_pred hhhhhhhhhceeEecccCCccccCCCCCceEEEEEEECCCCCCc-ccCHHHHHHHHHHHHhCcchHHHHHHhhhcCHHHH
Confidence 99999999999999999999999999999999999999875333 346899999999999999999999999875 3333
Q ss_pred H-HHHHcCCCCcccc
Q 017450 351 L-FVHKNIILPSIFL 364 (371)
Q Consensus 351 ~-~~~~~~~~~~~~~ 364 (371)
. .+.++||+|+.-.
T Consensus 231 ~~~~~~~~i~~~~r~ 245 (262)
T PF00398_consen 231 EELLEKAGIDPNARA 245 (262)
T ss_dssp HHHHHHCTHTTTTCG
T ss_pred HHhhhhcCCCCCCCc
Confidence 4 4455999998654
No 7
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=100.00 E-value=2e-41 Score=311.98 Aligned_cols=217 Identities=34% Similarity=0.482 Sum_probs=200.4
Q ss_pred hcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--
Q 017450 110 SKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-- 187 (371)
Q Consensus 110 ~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-- 187 (371)
..+..+++.+|||++.++.+++.|++.+.+++++.|||||+|||.+|..|++.|++|+|+|+|++|++.+.+++...+
T Consensus 27 ~~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 27 SGGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred ccCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 446789999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred -CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCC
Q 017450 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRT 266 (371)
Q Consensus 188 -~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~ 266 (371)
.+++++||+++.++ +.+|.||+|+||+|+|+++++|+.++..+.++++|+|+|+|.|+. +.||+
T Consensus 107 ~kLqV~~gD~lK~d~--------------P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLv-a~pgd 171 (315)
T KOG0820|consen 107 GKLQVLHGDFLKTDL--------------PRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLV-ARPGD 171 (315)
T ss_pred ceeeEEecccccCCC--------------cccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhc-cCCCC
Confidence 78999999999754 579999999999999999999999999999999999999999998 89999
Q ss_pred CCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCCCcchHhhccC
Q 017450 267 SEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVLQFKLLTTTSS 344 (371)
Q Consensus 267 k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~rRk~l~~~l~~ 344 (371)
+.|.++|+.+|+++.++.+++|+++.|+|+|+|+|+||+++++..++. .+...+..+++.+|....|++....++
T Consensus 172 ~~Ycrlsin~q~~a~v~~i~KVgknnFrPpPkVessvVriepk~P~pp---~~~~ewdg~lri~F~rkNktl~a~fk~ 246 (315)
T KOG0820|consen 172 SLYCRLSINVQLLARVTHIMKVGKNNFRPPPKVESSVVRIEPKNPRPP---VDFHEWDGLLRICFLRKNKTLMAPFKS 246 (315)
T ss_pred chhceeehhhHHhhcchhheeecccccCCCCccccceeEeecCCCCCc---cchHHHHHHHHHHHHHHhHHhhcchhh
Confidence 999999999999999999999999999999999999999999865432 357889999999999998887555444
No 8
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=100.00 E-value=9.2e-36 Score=264.50 Aligned_cols=167 Identities=40% Similarity=0.610 Sum_probs=154.4
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~ 209 (371)
++.|++.+...++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++...++++++++|+.++++.
T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~------- 74 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP------- 74 (169)
T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc-------
Confidence 5678888888889999999999999999999998899999999999999999987666899999999998642
Q ss_pred HhhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeeeeccceEEEEeC
Q 017450 210 ERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVP 289 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp 289 (371)
...+|.|++|+||+++++++.+++........+++|+|+|+++|++ +.||++.||+||+++|++++++.+++||
T Consensus 75 -----~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~-~~~~~~~y~~lsv~~~~~~~~~~~~~v~ 148 (169)
T smart00650 75 -----KLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLA-AKPGSKDYGRLSVLLQPYFDVKILFKVP 148 (169)
T ss_pred -----ccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhc-CCCCCCcccHHHHHHHHHeeEEEEEEEC
Confidence 2358999999999999999999998766678899999999999999 8999999999999999999999999999
Q ss_pred CCCcccCCCCceEEEEEEEc
Q 017450 290 RTNFFPQPKVDAAVVTFKLK 309 (371)
Q Consensus 290 ~~~F~P~PkVdS~vv~l~~~ 309 (371)
+++|+|+|||||+|++|+++
T Consensus 149 ~~~F~P~PkV~s~~~~~~~~ 168 (169)
T smart00650 149 PEAFRPPPKVDSAVVRLERR 168 (169)
T ss_pred hhhCCCCCCceEEEEEEEEC
Confidence 99999999999999999986
No 9
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=99.97 E-value=6.8e-31 Score=235.62 Aligned_cols=254 Identities=22% Similarity=0.367 Sum_probs=207.8
Q ss_pred HHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhc
Q 017450 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 106 ~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~ 184 (371)
+.+.-+..+++|.+.|||++|.++.++|+..++....+.|.|||+|.|..|..+.+.+. ++..||+|.++++-++-..+
T Consensus 15 e~i~lYRLqA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~E 94 (326)
T KOG0821|consen 15 EIIKLYRLQAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSE 94 (326)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhh
Confidence 33444467899999999999999999999999988899999999999999999999864 79999999999887765554
Q ss_pred cC-CCeEEEEcccccchhhhhhhhHHHh-hccCCCeeEEEecCCCcccHHHHHHhccC-----CCc---hhHHHHHhhhh
Q 017450 185 SI-DQLKVLQEDFVKCHIRSHMLSLFER-RKSSSGFAKVVANIPFNISTDVIKQLLPM-----GDI---FSEVVLLLQEE 254 (371)
Q Consensus 185 ~~-~~v~vi~gD~~~~~~~~~~~~l~~~-~~~~~~~d~VVaNlPy~iss~il~~Ll~~-----g~~---~~~~~lmvQke 254 (371)
.. ++..++++|++.+..++++.+-... +.+..+...++||+||++++|++.+++.. |.+ -..+++.+|+|
T Consensus 95 Aa~~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~E 174 (326)
T KOG0821|consen 95 AAPGKLRIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKE 174 (326)
T ss_pred cCCcceEEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHH
Confidence 43 3889999999998887654432221 12234456899999999999998877653 211 13678889999
Q ss_pred HHhhhccCCCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCCceEEEEEEEccCCCCCCCCChHHHHHHHHHHhcCC
Q 017450 255 TALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLNVL 334 (371)
Q Consensus 255 ~a~rl~~a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~v~~~F~~r 334 (371)
+|+|++ +.-|.+.-+++|++.|+++++...|.||.++|.|.|.||..||+|.|.+.+... ...+...+++|..|+.|
T Consensus 175 VAeRlC-aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~--~~F~lvEkV~R~vF~~R 251 (326)
T KOG0821|consen 175 VAERLC-APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIE--QPFKLVEKVVRNVFQFR 251 (326)
T ss_pred HHHHhc-ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCcccc--CCHHHHHHHHHHHHHHH
Confidence 999999 667788889999999999999999999999999999999999999998876432 24788899999999999
Q ss_pred CcchHhhccCCCCCc------hHHHHHcCCCCcc
Q 017450 335 QFKLLTTTSSFPDDS------ALFVHKNIILPSI 362 (371)
Q Consensus 335 Rk~l~~~l~~~~~~~------~~~~~~~~~~~~~ 362 (371)
.|-..+-|+.+.+++ --.|.++.|+|+.
T Consensus 252 QKY~~rGl~TL~PeE~r~E~~~~Ll~~~~idpT~ 285 (326)
T KOG0821|consen 252 QKYCHRGLRTLFPEEQRLESTGRLLELADIDPTL 285 (326)
T ss_pred HHHHHccccccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 999988887764332 2357889999974
No 10
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.9e-15 Score=137.03 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=117.6
Q ss_pred HHHhhhc-CCCCcHHHHHHHHHhcCCC---c-------------ccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCc
Q 017450 89 ACIVCAR-SQDDDYHATIKALNSKGRF---P-------------RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPG 151 (371)
Q Consensus 89 ~mv~~~~-~~~~~~~~~~~~l~~~~~~---~-------------~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G 151 (371)
+|+..++ +...++.++.++|...++. + ....|| ++..|.++.+|++.+.++++++|||||||
T Consensus 4 ~~l~~~lr~~~i~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gq-tis~P~~vA~m~~~L~~~~g~~VLEIGtG 82 (209)
T COG2518 4 RMLVERLRTEGITDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQ-TISAPHMVARMLQLLELKPGDRVLEIGTG 82 (209)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCc-eecCcHHHHHHHHHhCCCCCCeEEEECCC
Confidence 6677777 4456778999998876443 1 123567 89999999999999999999999999999
Q ss_pred ccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCCc
Q 017450 152 TGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFN 228 (371)
Q Consensus 152 ~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy~ 228 (371)
+||.|+.|++...+|++||+++.+++.|++++...+ |+.+++||....-. ...+||.|+-+ -.=.
T Consensus 83 sGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~------------~~aPyD~I~Vtaaa~~ 150 (209)
T COG2518 83 SGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP------------EEAPYDRIIVTAAAPE 150 (209)
T ss_pred chHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC------------CCCCcCEEEEeeccCC
Confidence 999999999998899999999999999999998765 89999999987532 34678887654 3336
Q ss_pred ccHHHHHHhccCCCch
Q 017450 229 ISTDVIKQLLPMGDIF 244 (371)
Q Consensus 229 iss~il~~Ll~~g~~~ 244 (371)
+...++++|.++|.++
T Consensus 151 vP~~Ll~QL~~gGrlv 166 (209)
T COG2518 151 VPEALLDQLKPGGRLV 166 (209)
T ss_pred CCHHHHHhcccCCEEE
Confidence 7889999999998764
No 11
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=4.1e-14 Score=125.61 Aligned_cols=169 Identities=21% Similarity=0.316 Sum_probs=120.2
Q ss_pred CCCcccccCcccCCCHHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC-
Q 017450 112 GRFPRKSLGQHYMLNSEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI- 186 (371)
Q Consensus 112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~- 186 (371)
...|+..+.| |.++..++..|+..+. .-.|.+|+|+|||||.++...+-.|+ .|+|||+|+++++.+++|..+.
T Consensus 14 f~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~ 92 (198)
T COG2263 14 FPNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL 92 (198)
T ss_pred CCCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC
Confidence 4568888999 9999999999998774 33678999999999999999998885 8999999999999999998765
Q ss_pred CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc-----HHHHHHhccCCCchhHHHHHhhhhHHhhhcc
Q 017450 187 DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-----TDVIKQLLPMGDIFSEVVLLLQEETALRLVE 261 (371)
Q Consensus 187 ~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is-----s~il~~Ll~~g~~~~~~~lmvQke~a~rl~~ 261 (371)
+++.++.+|+.++. ..+|.+++||||..- .+.+.+-++.+..+.....---+++.++...
T Consensus 93 g~v~f~~~dv~~~~---------------~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~ 157 (198)
T COG2263 93 GDVEFVVADVSDFR---------------GKFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAA 157 (198)
T ss_pred CceEEEEcchhhcC---------------CccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHH
Confidence 48999999999874 568899999999543 3455555554443332222223344444441
Q ss_pred CCCCCCCCcceeeeeeeeccceEEEEeCCCCcccCCCC---ceEEEEEE
Q 017450 262 PSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKV---DAAVVTFK 307 (371)
Q Consensus 262 a~pg~k~Yg~Lsv~~q~~~~~~~~~~Vp~~~F~P~PkV---dS~vv~l~ 307 (371)
..|- ++...+ ...|.||+...+..-+| +..+.+|.
T Consensus 158 ------~~G~-~v~~~~----~~~~~iP~~y~fH~k~~~~I~v~i~r~~ 195 (198)
T COG2263 158 ------DLGG-TVTHIE----RARFPIPRTYPFHRKRVRRIEVDIFRFE 195 (198)
T ss_pred ------hcCC-eEEEEE----EEEEecCccCchhhheeeeeeEEEEEEE
Confidence 1110 122111 46688999998886544 44444443
No 12
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.57 E-value=1.8e-14 Score=132.28 Aligned_cols=145 Identities=21% Similarity=0.325 Sum_probs=108.4
Q ss_pred HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 017450 87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (371)
Q Consensus 87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG 149 (371)
++.||+++++.+ +++.++.++|+...+. +. -..|+ .+..|.+..+|++.+.++++++|||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~-~is~P~~~a~~l~~L~l~pg~~VLeIG 80 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQ-TISAPSMVARMLEALDLKPGDRVLEIG 80 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTE-EE--HHHHHHHHHHTTC-TT-EEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeeccee-echHHHHHHHHHHHHhcCCCCEEEEec
Confidence 578999999666 8999999999876543 11 12244 788899999999999999999999999
Q ss_pred CcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 150 PGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 150 ~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
||+|++|..|+.. + ..|++||+++.+++.|++++...+ |++++++|...... ...+||.|+.+
T Consensus 81 tGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~------------~~apfD~I~v~ 148 (209)
T PF01135_consen 81 TGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP------------EEAPFDRIIVT 148 (209)
T ss_dssp -TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG------------GG-SEEEEEES
T ss_pred CCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc------------cCCCcCEEEEe
Confidence 9999999999986 3 369999999999999999998644 89999999876432 23579998876
Q ss_pred CC-CcccHHHHHHhccCCCch
Q 017450 225 IP-FNISTDVIKQLLPMGDIF 244 (371)
Q Consensus 225 lP-y~iss~il~~Ll~~g~~~ 244 (371)
-. ..+...++.+|.++|.++
T Consensus 149 ~a~~~ip~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 149 AAVPEIPEALLEQLKPGGRLV 169 (209)
T ss_dssp SBBSS--HHHHHTEEEEEEEE
T ss_pred eccchHHHHHHHhcCCCcEEE
Confidence 33 367788888988887653
No 13
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=1e-13 Score=127.60 Aligned_cols=145 Identities=20% Similarity=0.250 Sum_probs=112.2
Q ss_pred HHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450 86 AASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (371)
Q Consensus 86 ~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI 148 (371)
.++.||+.+++.+ +++.++.++|....+. |. -..|| .++.|.+...+++.+.+.++++||||
T Consensus 5 ~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~-~~~~p~~~~~~~~~l~~~~g~~VLdI 83 (212)
T PRK13942 5 EKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQ-TISAIHMVAIMCELLDLKEGMKVLEI 83 (212)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCC-EeCcHHHHHHHHHHcCCCCcCEEEEE
Confidence 3478999999776 7899999999866432 11 22455 67899999999999999999999999
Q ss_pred cCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 149 GPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 149 G~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
|||+|++|..+++. + .+|+++|+++++++.+++++...+ +++++++|+.+... ....||+|+.
T Consensus 84 G~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------------~~~~fD~I~~ 151 (212)
T PRK13942 84 GTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------------ENAPYDRIYV 151 (212)
T ss_pred CCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC------------cCCCcCEEEE
Confidence 99999999999886 2 599999999999999999987543 79999999976532 2356899876
Q ss_pred cCC-CcccHHHHHHhccCCCc
Q 017450 224 NIP-FNISTDVIKQLLPMGDI 243 (371)
Q Consensus 224 NlP-y~iss~il~~Ll~~g~~ 243 (371)
+-- -.+...+...|.++|.+
T Consensus 152 ~~~~~~~~~~l~~~LkpgG~l 172 (212)
T PRK13942 152 TAAGPDIPKPLIEQLKDGGIM 172 (212)
T ss_pred CCCcccchHHHHHhhCCCcEE
Confidence 532 23445556666665544
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=1.4e-13 Score=126.80 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=112.8
Q ss_pred HHHHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-----------cccC-cccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450 85 GAASACIVCARSQD-DDYHATIKALNSKGRF---PR-----------KSLG-QHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (371)
Q Consensus 85 ~~r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-----------k~lG-Q~fl~~~~v~~~i~~~l~~~~~~~VLEI 148 (371)
..++.||+.+++.+ +++..+.++|....+. +. ..+| .+.+..+.+.+.+++.+.+.++++||||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDi 84 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEI 84 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEE
Confidence 34678999999776 7889999998876432 11 1122 1367788899999999999999999999
Q ss_pred cCcccHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 149 GPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 149 G~G~G~lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
|||+|+++..|++... +|+++|+++.+++.|++++...+ +++++++|+.+... ....||.|+.
T Consensus 85 G~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~------------~~~~fD~Ii~ 152 (215)
T TIGR00080 85 GTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE------------PLAPYDRIYV 152 (215)
T ss_pred CCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc------------ccCCCCEEEE
Confidence 9999999999998743 59999999999999999987653 89999999976421 2356999887
Q ss_pred cCC-CcccHHHHHHhccCCCc
Q 017450 224 NIP-FNISTDVIKQLLPMGDI 243 (371)
Q Consensus 224 NlP-y~iss~il~~Ll~~g~~ 243 (371)
+.+ .++...+...|.++|.+
T Consensus 153 ~~~~~~~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 153 TAAGPKIPEALIDQLKEGGIL 173 (215)
T ss_pred cCCcccccHHHHHhcCcCcEE
Confidence 754 35555666666666544
No 15
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=3.7e-13 Score=123.23 Aligned_cols=144 Identities=16% Similarity=0.159 Sum_probs=109.8
Q ss_pred HHHHHhhhcCCC-CcHHHHHHHHHhcCCC---cc-------------cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEc
Q 017450 87 ASACIVCARSQD-DDYHATIKALNSKGRF---PR-------------KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIG 149 (371)
Q Consensus 87 r~~mv~~~~~~~-~~~~~~~~~l~~~~~~---~~-------------k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG 149 (371)
|..||+.+.+.+ +++.++.++|.+.++. +. -..|+ .+..+.+.+.+++.+.+.++++|||||
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~~~~~l~~~~~~~VLDiG 80 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGA-TISAPHMVAMMCELIEPRPGMKILEVG 80 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCC-EechHHHHHHHHHhcCCCCCCEEEEEC
Confidence 457999888665 5789999998776432 11 12233 566788899999999988999999999
Q ss_pred CcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 150 PGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 150 ~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
||+|+++..+++. +.+|+++|+++++++.+++++...+ +++++++|+.+... ....||.|++
T Consensus 81 ~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~Ii~ 148 (205)
T PRK13944 81 TGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------------KHAPFDAIIV 148 (205)
T ss_pred cCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------------cCCCccEEEE
Confidence 9999999999875 3689999999999999999987543 58999999976422 2357999998
Q ss_pred cCCC-cccHHHHHHhccCCCc
Q 017450 224 NIPF-NISTDVIKQLLPMGDI 243 (371)
Q Consensus 224 NlPy-~iss~il~~Ll~~g~~ 243 (371)
+... ++...+...|.++|.+
T Consensus 149 ~~~~~~~~~~l~~~L~~gG~l 169 (205)
T PRK13944 149 TAAASTIPSALVRQLKDGGVL 169 (205)
T ss_pred ccCcchhhHHHHHhcCcCcEE
Confidence 8654 4555666666666544
No 16
>PHA03412 putative methyltransferase; Provisional
Probab=99.46 E-value=4.1e-13 Score=124.41 Aligned_cols=109 Identities=14% Similarity=0.256 Sum_probs=87.3
Q ss_pred HHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-----CCeEEEEeCCHHHHHH
Q 017450 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-----GATVLAIEKDQHMVGL 178 (371)
Q Consensus 104 ~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-----~~~V~aIE~d~~~i~~ 178 (371)
+.+-+.+.....++.+|| |.++..++..++... ..+.+|||+|||+|.++..+++. ..+|+|||+|+.+++.
T Consensus 15 ~~~n~~~~~~~~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 15 IIENFHEGAFTNNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred HHhhcccccccccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 444444545567888999 999999999886432 24679999999999999998874 3589999999999999
Q ss_pred HHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 179 VRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 179 a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
|+++.. ++.++++|+...++ ...||.||+||||....
T Consensus 92 Ar~n~~---~~~~~~~D~~~~~~-------------~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 92 GKRIVP---EATWINADALTTEF-------------DTLFDMAISNPPFGKIK 128 (241)
T ss_pred HHhhcc---CCEEEEcchhcccc-------------cCCccEEEECCCCCCcc
Confidence 998864 68899999986542 24799999999998643
No 17
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.41 E-value=6.6e-12 Score=115.26 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=107.7
Q ss_pred HHHHHHHhhhcCCCCcHHHHHHHHHhcCCC---ccc-------------ccCcccCCCHHHHHHHHHHhcCCCCCEEEEE
Q 017450 85 GAASACIVCARSQDDDYHATIKALNSKGRF---PRK-------------SLGQHYMLNSEINDQLAAAAAVQEGDIVLEI 148 (371)
Q Consensus 85 ~~r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~~k-------------~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEI 148 (371)
..|.+||+...+..+....+.++|....+. |.. ..|+ ++..+.+...++..+...++.+||||
T Consensus 7 ~~~~~~v~~l~~~~~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~-~~~~p~~~~~l~~~l~~~~~~~VLei 85 (212)
T PRK00312 7 ERFARLVLRLRAEGILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQ-TISQPYMVARMTELLELKPGDRVLEI 85 (212)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCC-eeCcHHHHHHHHHhcCCCCCCEEEEE
Confidence 468889994335557788999998876443 211 1122 57889999999999999999999999
Q ss_pred cCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 149 GPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 149 G~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
|||+|++|..+++.+.+|+++|+++.+++.+++++...+ +++++.+|+.+... ..+.||.|+.+.+
T Consensus 86 G~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~fD~I~~~~~ 153 (212)
T PRK00312 86 GTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP------------AYAPFDRILVTAA 153 (212)
T ss_pred CCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC------------cCCCcCEEEEccC
Confidence 999999999888887799999999999999999987543 79999999865311 2256999887654
Q ss_pred C-cccHHHHHHhccCCC
Q 017450 227 F-NISTDVIKQLLPMGD 242 (371)
Q Consensus 227 y-~iss~il~~Ll~~g~ 242 (371)
. ++...+...|.++|.
T Consensus 154 ~~~~~~~l~~~L~~gG~ 170 (212)
T PRK00312 154 APEIPRALLEQLKEGGI 170 (212)
T ss_pred chhhhHHHHHhcCCCcE
Confidence 3 333444444444443
No 18
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.29 E-value=7.8e-12 Score=116.72 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=75.8
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
+|-+|.-++. +........+|||+|||+|.++..++++ . +++++||+++++++.|+++++.++ +++++++|+
T Consensus 28 ~~~~DaiLL~---~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di 104 (248)
T COG4123 28 RYGTDAILLA---AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI 104 (248)
T ss_pred ccccHHHHHH---hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH
Confidence 3444443333 3344445789999999999999999997 4 799999999999999999987653 899999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
.++... .....||.||+||||+-..
T Consensus 105 ~~~~~~----------~~~~~fD~Ii~NPPyf~~~ 129 (248)
T COG4123 105 KEFLKA----------LVFASFDLIICNPPYFKQG 129 (248)
T ss_pred HHhhhc----------ccccccCEEEeCCCCCCCc
Confidence 987543 1234699999999996543
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.29 E-value=1.8e-11 Score=100.21 Aligned_cols=73 Identities=30% Similarity=0.437 Sum_probs=61.2
Q ss_pred CCCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
|+.+|||||||+|.++..+++ .+.+|+|||+|+.+++.++++... .++++++++|+ ..... ..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-----------~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-----------FL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-----------TS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-----------cC
Confidence 578999999999999999999 688999999999999999999832 25999999999 32221 23
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+.||+|+.+.
T Consensus 69 ~~~D~v~~~~ 78 (112)
T PF12847_consen 69 EPFDLVICSG 78 (112)
T ss_dssp SCEEEEEECS
T ss_pred CCCCEEEECC
Confidence 5699999876
No 20
>PHA03411 putative methyltransferase; Provisional
Probab=99.28 E-value=2.7e-11 Score=114.70 Aligned_cols=109 Identities=14% Similarity=0.260 Sum_probs=85.9
Q ss_pred cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHH
Q 017450 100 DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVG 177 (371)
Q Consensus 100 ~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~ 177 (371)
+.+-+.+.+++.++ ...|| |.+++.++..++. ....+.+|||+|||+|.++..++.. +.+|+++|+++.+++
T Consensus 29 ~~~~v~~~~~g~~~---~~~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~ 102 (279)
T PHA03411 29 EKEFCYNNYHGDGL---GGSGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFAR 102 (279)
T ss_pred cHHHHHHhcccccc---cCcee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 55556666665553 33688 9999999976642 3345679999999999999988875 469999999999999
Q ss_pred HHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 178 LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 178 ~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
.+++++ ++++++++|+.++.. ...||.||+|+||...
T Consensus 103 ~Ar~n~---~~v~~v~~D~~e~~~-------------~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 103 IGKRLL---PEAEWITSDVFEFES-------------NEKFDVVISNPPFGKI 139 (279)
T ss_pred HHHHhC---cCCEEEECchhhhcc-------------cCCCcEEEEcCCcccc
Confidence 999875 378999999987632 2569999999999764
No 21
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.28 E-value=1.8e-11 Score=108.73 Aligned_cols=86 Identities=23% Similarity=0.415 Sum_probs=67.3
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhh
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~ 207 (371)
.+++.+...++.+|||+|||+|.++..+++.+. +|+++|+++.+++.+++++..++ +++++++|..+..
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~------- 94 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL------- 94 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-------
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-------
Confidence 444444444678999999999999999999854 59999999999999999998764 4999999987632
Q ss_pred HHHhhccCCCeeEEEecCCCccc
Q 017450 208 LFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy~is 230 (371)
....||.|++|+|++..
T Consensus 95 ------~~~~fD~Iv~NPP~~~~ 111 (170)
T PF05175_consen 95 ------PDGKFDLIVSNPPFHAG 111 (170)
T ss_dssp ------CTTCEEEEEE---SBTT
T ss_pred ------cccceeEEEEccchhcc
Confidence 24689999999997544
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.25 E-value=2.3e-11 Score=100.39 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=65.1
Q ss_pred CCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
|.+|||+|||+|.++..+++.+ .+++++|+|+..++.++.++... ++++++++|+.+.... ...++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----------~~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP----------LPDGK 70 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------CTTT-
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------ccCce
Confidence 5689999999999999999998 89999999999999999998765 3799999999887511 13478
Q ss_pred eeEEEecCCCccc
Q 017450 218 FAKVVANIPFNIS 230 (371)
Q Consensus 218 ~d~VVaNlPy~is 230 (371)
+|+|++|+||...
T Consensus 71 ~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 71 FDLIVTNPPYGPR 83 (117)
T ss_dssp EEEEEE--STTSB
T ss_pred eEEEEECCCCccc
Confidence 9999999999644
No 23
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=6.9e-11 Score=109.49 Aligned_cols=93 Identities=24% Similarity=0.332 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~ 203 (371)
+..++..++......++++|||+|||+|.++..++..+. +|+++|+|+.+++.++++....+ +++++++|+.+..
T Consensus 21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~--- 97 (223)
T PRK14967 21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV--- 97 (223)
T ss_pred cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc---
Confidence 445555556666677889999999999999999998765 99999999999999999886543 6788889986531
Q ss_pred hhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
....||.|++|+||...+
T Consensus 98 ----------~~~~fD~Vi~npPy~~~~ 115 (223)
T PRK14967 98 ----------EFRPFDVVVSNPPYVPAP 115 (223)
T ss_pred ----------cCCCeeEEEECCCCCCCC
Confidence 235799999999997553
No 24
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.23 E-value=7.9e-11 Score=115.45 Aligned_cols=97 Identities=25% Similarity=0.269 Sum_probs=84.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccch
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~ 200 (371)
-.+++.++..|+..+...++++|||+|||+|.++..++..+.+++|+|+|+.|+..++.|+..++ +++++.+|+.+++
T Consensus 164 ~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~ 243 (329)
T TIGR01177 164 GSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP 243 (329)
T ss_pred CCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC
Confidence 45678899999999998999999999999999999888889999999999999999999987543 6789999999876
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
+. ...+|.|++|+||....
T Consensus 244 ~~------------~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 244 LS------------SESVDAIATDPPYGRST 262 (329)
T ss_pred cc------------cCCCCEEEECCCCcCcc
Confidence 42 35799999999997654
No 25
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=2.5e-10 Score=111.34 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=105.1
Q ss_pred HHHHHHhhhcCCCCcHHHHHHHHHhcCCC---cc----------c-----ccCc--ccCCCHHHHHHHHHHhcCCCCCEE
Q 017450 86 AASACIVCARSQDDDYHATIKALNSKGRF---PR----------K-----SLGQ--HYMLNSEINDQLAAAAAVQEGDIV 145 (371)
Q Consensus 86 ~r~~mv~~~~~~~~~~~~~~~~l~~~~~~---~~----------k-----~lGQ--~fl~~~~v~~~i~~~l~~~~~~~V 145 (371)
.|+.||+...+..+++ +++++|.+.++. |. . .-|. .+.+++.+...+++.+.+.++++|
T Consensus 6 ~~~~lv~~l~~~gv~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~i~~g~~V 84 (322)
T PRK13943 6 MREKLFWILKKYGISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRV 84 (322)
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcCCCCCCEE
Confidence 4577888665666777 888888876432 11 1 1121 366789999999999999899999
Q ss_pred EEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450 146 LEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~ 220 (371)
||||||+|+++..+++.. .+|+++|+++++++.|++++...+ ++.++++|+.+... ....+|+
T Consensus 85 LDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~------------~~~~fD~ 152 (322)
T PRK13943 85 LEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP------------EFAPYDV 152 (322)
T ss_pred EEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc------------ccCCccE
Confidence 999999999999999863 369999999999999999887543 78999999876432 1246899
Q ss_pred EEecCCC-cccHHHHHHhccCCCc
Q 017450 221 VVANIPF-NISTDVIKQLLPMGDI 243 (371)
Q Consensus 221 VVaNlPy-~iss~il~~Ll~~g~~ 243 (371)
|+.+... ++...++..|.++|.+
T Consensus 153 Ii~~~g~~~ip~~~~~~LkpgG~L 176 (322)
T PRK13943 153 IFVTVGVDEVPETWFTQLKEGGRV 176 (322)
T ss_pred EEECCchHHhHHHHHHhcCCCCEE
Confidence 8874321 2334455566666543
No 26
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.20 E-value=8.5e-11 Score=105.05 Aligned_cols=86 Identities=28% Similarity=0.297 Sum_probs=70.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHH
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~ 209 (371)
..+.+.+...++++|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...+ +++++.+|+.+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--------- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--------- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---------
Confidence 334455555567899999999999999999988799999999999999999987544 6888999986642
Q ss_pred HhhccCCCeeEEEecCCCccc
Q 017450 210 ERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlPy~is 230 (371)
.+.||.|++|+||...
T Consensus 80 -----~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 80 -----RGKFDVILFNPPYLPL 95 (179)
T ss_pred -----CCcccEEEECCCCCCC
Confidence 2479999999999644
No 27
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.17 E-value=1.5e-10 Score=103.24 Aligned_cols=115 Identities=23% Similarity=0.281 Sum_probs=89.9
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK 198 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~ 198 (371)
+++.+++..-.++.+.+.++++++|||||||..|..++.. ..+|+|||.|+++++..++|.+..+ |++++.||+.+
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 4888999999999999999999999999999999999954 5699999999999999999988764 99999999988
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCC---cccHHHHHHhccCCCchhHHHH
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF---NISTDVIKQLLPMGDIFSEVVL 249 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy---~iss~il~~Ll~~g~~~~~~~l 249 (371)
... +.+.+|.+|-+==- .+...+..+|.++|.++..++.
T Consensus 96 ~L~------------~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 96 ALP------------DLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hhc------------CCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 632 22368887743111 2333444566677777655543
No 28
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=1.4e-10 Score=105.85 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhh
Q 017450 128 EINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 128 ~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~ 203 (371)
.+.+.+++.+. ..++.+|||+|||+|.++..++.. ..+|++||+|+.+++.++++++.++ +++++++|+.+.-.
T Consensus 39 ~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~-- 116 (199)
T PRK10909 39 RVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA-- 116 (199)
T ss_pred HHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh--
Confidence 34444444443 246789999999999999876555 4699999999999999999987654 78999999876421
Q ss_pred hhhhHHHhhccCCCeeEEEecCCCc
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
.....+|+|+.||||.
T Consensus 117 ---------~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 117 ---------QPGTPHNVVFVDPPFR 132 (199)
T ss_pred ---------hcCCCceEEEECCCCC
Confidence 0124599999999984
No 29
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.14 E-value=3.1e-10 Score=115.62 Aligned_cols=104 Identities=23% Similarity=0.260 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~ 205 (371)
.+++.+++.+...++++|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++...+ .+++++.+|+.+......
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~- 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP- 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh-
Confidence 34555666667778899999999999999999998889999999999999999998654 379999999976421000
Q ss_pred hhHHHhhccCCCeeEEEecCCCcccHHHHHHhcc
Q 017450 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLP 239 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~ 239 (371)
.....+|+|+.|+||.-..+++.++..
T Consensus 363 -------~~~~~fD~Vi~dPPr~g~~~~~~~l~~ 389 (443)
T PRK13168 363 -------WALGGFDKVLLDPPRAGAAEVMQALAK 389 (443)
T ss_pred -------hhcCCCCEEEECcCCcChHHHHHHHHh
Confidence 012468999999999877777766654
No 30
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=4.1e-10 Score=111.96 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEcccccchhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIR 202 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~~~~~~~ 202 (371)
.+.+++.+....+.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++++.+. +++++.+|+.+..
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~-- 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV-- 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC--
Confidence 455667776555679999999999999999987 4699999999999999999986442 5788888886531
Q ss_pred hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
....||.|++|+||+.
T Consensus 295 -----------~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 295 -----------EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred -----------CCCCEEEEEECcCccc
Confidence 2347999999999974
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.12 E-value=3.3e-10 Score=102.91 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=66.9
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHH
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFE 210 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~ 210 (371)
.+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+ +++...+|+...++
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~--------- 91 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL--------- 91 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc---------
Confidence 44455555667899999999999999999999999999999999999988775433 46677777654432
Q ss_pred hhccCCCeeEEEecCCCcc
Q 017450 211 RRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 211 ~~~~~~~~d~VVaNlPy~i 229 (371)
.+.+|.|+++.+++.
T Consensus 92 ----~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 92 ----NEDYDFIFSTVVFMF 106 (195)
T ss_pred ----cCCCCEEEEeccccc
Confidence 246999999888753
No 32
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.1e-10 Score=108.85 Aligned_cols=74 Identities=24% Similarity=0.446 Sum_probs=61.1
Q ss_pred EEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
+|||||||+|.++..++.... +|+|+|+|++.++.|++|...++ ++.++++|..+- ..++||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~--------------~~~~fD 178 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP--------------LRGKFD 178 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------cCCcee
Confidence 799999999999999999854 99999999999999999998764 566666665542 235899
Q ss_pred EEEecCCCcccH
Q 017450 220 KVVANIPFNIST 231 (371)
Q Consensus 220 ~VVaNlPy~iss 231 (371)
+||+||||--.+
T Consensus 179 lIVsNPPYip~~ 190 (280)
T COG2890 179 LIVSNPPYIPAE 190 (280)
T ss_pred EEEeCCCCCCCc
Confidence 999999984443
No 33
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=9.9e-10 Score=98.84 Aligned_cols=92 Identities=14% Similarity=0.198 Sum_probs=75.9
Q ss_pred cccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccc
Q 017450 121 QHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF 196 (371)
Q Consensus 121 Q~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~ 196 (371)
+..++.+.+...++..+...++.+|||||||+|.++..+++.. .+|+++|+++.+++.++++.... .+++++.+|+
T Consensus 11 ~~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~ 90 (187)
T PRK08287 11 KVPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA 90 (187)
T ss_pred CCCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc
Confidence 5567888888888899988889999999999999999999863 58999999999999999988654 3789999987
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
.. . ..+.+|.|+++..
T Consensus 91 ~~-~-------------~~~~~D~v~~~~~ 106 (187)
T PRK08287 91 PI-E-------------LPGKADAIFIGGS 106 (187)
T ss_pred hh-h-------------cCcCCCEEEECCC
Confidence 42 1 1246899987754
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.12 E-value=5.7e-10 Score=106.09 Aligned_cols=99 Identities=19% Similarity=0.332 Sum_probs=82.5
Q ss_pred CcccccCcccCCCH--HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeE
Q 017450 114 FPRKSLGQHYMLNS--EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLK 190 (371)
Q Consensus 114 ~~~k~lGQ~fl~~~--~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~ 190 (371)
...+-+|.+|+.+. .....++..+.+.++.+|||||||+|..+..++.. +++|+|+|+++.+++.++++....++++
T Consensus 23 ~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~ 102 (263)
T PTZ00098 23 AYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE 102 (263)
T ss_pred hHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceE
Confidence 34456788888886 34778888888899999999999999999999875 6799999999999999999876555899
Q ss_pred EEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 191 VLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 191 vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
++.+|+.+.++. ...||+|+++
T Consensus 103 ~~~~D~~~~~~~------------~~~FD~V~s~ 124 (263)
T PTZ00098 103 FEANDILKKDFP------------ENTFDMIYSR 124 (263)
T ss_pred EEECCcccCCCC------------CCCeEEEEEh
Confidence 999999876542 3579999985
No 35
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.11 E-value=3.9e-10 Score=105.19 Aligned_cols=91 Identities=21% Similarity=0.365 Sum_probs=75.7
Q ss_pred ccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEE
Q 017450 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQ 193 (371)
Q Consensus 118 ~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~ 193 (371)
++|++ ....+.+++.+...+|.+|||+|||||.+|..+++.. ++|+++|+++.|++.++++..+.+ ++++++
T Consensus 32 S~g~~----~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 32 SFGLH----RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred cCcch----HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 45554 4456667777777789999999999999999999985 699999999999999999987643 599999
Q ss_pred cccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 194 EDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 194 gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
|||+++++++ ..||.|...
T Consensus 108 ~dAe~LPf~D------------~sFD~vt~~ 126 (238)
T COG2226 108 GDAENLPFPD------------NSFDAVTIS 126 (238)
T ss_pred echhhCCCCC------------CccCEEEee
Confidence 9999999754 568887754
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.11 E-value=1.3e-10 Score=109.26 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~ 204 (371)
+...+++.+++.+...++.+|||||||+|.++..+++.+.+|+++|+++.|++.++++.. ...++.+|+.++++.
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~~~-- 100 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLPLA-- 100 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCcCC--
Confidence 345677778888876677899999999999999999889999999999999999998754 356889999887542
Q ss_pred hhhHHHhhccCCCeeEEEecCCCccc
Q 017450 205 MLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
...||.|++|.++++.
T Consensus 101 ----------~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 101 ----------TATFDLAWSNLAVQWC 116 (251)
T ss_pred ----------CCcEEEEEECchhhhc
Confidence 3579999999877543
No 37
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.11 E-value=4.5e-10 Score=108.00 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+.. .
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-------------~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-------------P 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-------------C
Confidence 45679999999999999999986 4699999999999999999987543 6899999986521 1
Q ss_pred CCCeeEEEecCCCcccH
Q 017450 215 SSGFAKVVANIPFNIST 231 (371)
Q Consensus 215 ~~~~d~VVaNlPy~iss 231 (371)
...+|.||+|+||.-..
T Consensus 187 ~~~fD~Iv~NPPy~~~~ 203 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAE 203 (284)
T ss_pred CCCccEEEECCCCCCcc
Confidence 24699999999996443
No 38
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.11 E-value=3.4e-10 Score=110.32 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=79.8
Q ss_pred cCCCHHHHHHHH----HHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450 123 YMLNSEINDQLA----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~ 196 (371)
|-+++.+.+.+. +.+...++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|+++...++ +++++.+|+
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~ 230 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS 230 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH
Confidence 445565555554 34443457899999999999999999999999999999999999999987553 799999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCccc-HHHHHHhc
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS-TDVIKQLL 238 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is-s~il~~Ll 238 (371)
.++... ....+|.|+.|+|+... ..++..|.
T Consensus 231 ~~~~~~-----------~~~~~D~Vv~dPPr~G~~~~~~~~l~ 262 (315)
T PRK03522 231 TQFATA-----------QGEVPDLVLVNPPRRGIGKELCDYLS 262 (315)
T ss_pred HHHHHh-----------cCCCCeEEEECCCCCCccHHHHHHHH
Confidence 875321 12458999999998643 34444443
No 39
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.10 E-value=4.6e-10 Score=112.22 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+ +++++++|+.+..+. ..+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-----------~~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-----------SEG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-----------cCC
Confidence 35679999999999999999875 5799999999999999999987654 799999998764321 124
Q ss_pred CeeEEEecCCCcccH
Q 017450 217 GFAKVVANIPFNIST 231 (371)
Q Consensus 217 ~~d~VVaNlPy~iss 231 (371)
.+|.|++|+||.-..
T Consensus 319 ~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 319 KWDIIVSNPPYIENG 333 (423)
T ss_pred CccEEEECCCCCCcc
Confidence 699999999996543
No 40
>PRK14968 putative methyltransferase; Provisional
Probab=99.09 E-value=9.6e-10 Score=98.06 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--C--eEEEEcccccchhhhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--Q--LKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~--v~vi~gD~~~~~~~~~~ 205 (371)
...+++.+...++++|||+|||+|.++..++..+.+|+++|+++++++.+++++...+ + +.++++|+.+..
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc-----
Confidence 3445555555678899999999999999999998999999999999999998876433 2 888999986631
Q ss_pred hhHHHhhccCCCeeEEEecCCCcccH
Q 017450 206 LSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
....+|.|++|+||....
T Consensus 87 --------~~~~~d~vi~n~p~~~~~ 104 (188)
T PRK14968 87 --------RGDKFDVILFNPPYLPTE 104 (188)
T ss_pred --------cccCceEEEECCCcCCCC
Confidence 123699999999997643
No 41
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.09 E-value=7e-10 Score=96.34 Aligned_cols=77 Identities=21% Similarity=0.410 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+++.+|||+|||+|.++..+++. +.+++|+|+++.|++.|++++... ++++++++|+.+++.. -
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-----------~ 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-----------L 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-----------S
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-----------c
Confidence 36789999999999999999953 679999999999999999987654 4899999999996411 0
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
...+|+|+++.++
T Consensus 71 ~~~~D~I~~~~~l 83 (152)
T PF13847_consen 71 EEKFDIIISNGVL 83 (152)
T ss_dssp STTEEEEEEESTG
T ss_pred CCCeeEEEEcCch
Confidence 1579999998775
No 42
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.09 E-value=5.9e-10 Score=97.18 Aligned_cols=101 Identities=23% Similarity=0.429 Sum_probs=86.3
Q ss_pred cccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHhccCCCeEE
Q 017450 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA---TVLAIEKDQHMVGLVRERFASIDQLKV 191 (371)
Q Consensus 115 ~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~---~V~aIE~d~~~i~~a~~~~~~~~~v~v 191 (371)
..+..|-.-.++.-.+++|.+.++...|.-|||+|+|||.+|..++++|. .+++||.+++++..+.+.+. .+++
T Consensus 22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p---~~~i 98 (194)
T COG3963 22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP---GVNI 98 (194)
T ss_pred CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC---Cccc
Confidence 44566777788889999999999999999999999999999999999863 79999999999999999875 6779
Q ss_pred EEcccccch--hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 192 LQEDFVKCH--IRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 192 i~gD~~~~~--~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
++||+.++. +.+ .....+|.||+.+|.
T Consensus 99 i~gda~~l~~~l~e---------~~gq~~D~viS~lPl 127 (194)
T COG3963 99 INGDAFDLRTTLGE---------HKGQFFDSVISGLPL 127 (194)
T ss_pred cccchhhHHHHHhh---------cCCCeeeeEEecccc
Confidence 999998876 322 245679999998875
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.07 E-value=5.9e-10 Score=101.43 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=67.8
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHH
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~ 209 (371)
.+++.+...++.+|||+|||+|..+..|++.+.+|+|+|+++.+++.++++.... .+++++.+|+.+.++
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 92 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-------- 92 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc--------
Confidence 3344455567789999999999999999999999999999999999999887654 368888899877643
Q ss_pred HhhccCCCeeEEEecCCCc
Q 017450 210 ERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlPy~ 228 (371)
.+.||.|+++..++
T Consensus 93 -----~~~fD~I~~~~~~~ 106 (197)
T PRK11207 93 -----DGEYDFILSTVVLM 106 (197)
T ss_pred -----CCCcCEEEEecchh
Confidence 24699999887643
No 44
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.4e-10 Score=97.32 Aligned_cols=105 Identities=22% Similarity=0.316 Sum_probs=86.8
Q ss_pred CCCcccccCcccCCCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC
Q 017450 112 GRFPRKSLGQHYMLNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI 186 (371)
Q Consensus 112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~ 186 (371)
..+|+-.+.| |.+.|+++..|+..+.. ..|++++|+|||+|.+....+-.+ ..|+|+|+|++.++.+..|.+..
T Consensus 16 FeKpk~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf 94 (185)
T KOG3420|consen 16 FEKPKLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF 94 (185)
T ss_pred ccccchhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh
Confidence 3457777888 99999999999987753 467899999999999996666554 47999999999999999998766
Q ss_pred C-CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 187 D-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 187 ~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
. ++.++++|+++..+ ..+.||.+|.|+||.-
T Consensus 95 EvqidlLqcdildle~------------~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 95 EVQIDLLQCDILDLEL------------KGGIFDTAVINPPFGT 126 (185)
T ss_pred hhhhheeeeeccchhc------------cCCeEeeEEecCCCCc
Confidence 5 77899999988653 3478999999999953
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.07 E-value=1.5e-09 Score=100.57 Aligned_cols=90 Identities=14% Similarity=0.273 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~ 200 (371)
.....+.+++.+.+.++++|||||||+|..+..+++. +.+|+|+|+++.+++.+++++... ++++++++|+.+++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 4455677888888888999999999999999999975 359999999999999999987643 47899999998865
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+. .+.+|.|+++..+
T Consensus 110 ~~------------~~~fD~V~~~~~l 124 (231)
T TIGR02752 110 FD------------DNSFDYVTIGFGL 124 (231)
T ss_pred CC------------CCCccEEEEeccc
Confidence 42 3579999987654
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.07 E-value=2e-09 Score=89.12 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccch
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCH 200 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~ 200 (371)
..+.+...+++.+.+.++++|||+|||+|.++..+++. +.+|+++|+++.+++.++++.... ++++++.+|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 3 TKREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred chHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 44567778888888888889999999999999999986 468999999999999999887654 47889999877531
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
.. ..+.+|.|+...+
T Consensus 83 ~~-----------~~~~~D~v~~~~~ 97 (124)
T TIGR02469 83 ED-----------SLPEPDRVFIGGS 97 (124)
T ss_pred hh-----------hcCCCCEEEECCc
Confidence 10 1256899887544
No 47
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.06 E-value=1.4e-09 Score=103.39 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhcc-----CCCeEEEEcccccch
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCH 200 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~-----~~~v~vi~gD~~~~~ 200 (371)
....+++.+.+.++++|||+|||+|.++..+++. + .+|+|+|++++|++.|+++... ..+++++++|+.+++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3444556667778899999999999999999886 3 5899999999999999877531 247999999999887
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+. .+.||.|+++.-+
T Consensus 141 ~~------------~~sfD~V~~~~~l 155 (261)
T PLN02233 141 FD------------DCYFDAITMGYGL 155 (261)
T ss_pred CC------------CCCEeEEEEeccc
Confidence 53 3579999886543
No 48
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.06 E-value=1.3e-09 Score=101.86 Aligned_cols=90 Identities=21% Similarity=0.366 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~ 203 (371)
.++..++..+. ..+.+|||+|||+|.++..++.. +.+++|+|+++.+++.++++....+ +++++++|+.+. +
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~-- 150 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-L-- 150 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-C--
Confidence 44555555554 34568999999999999999986 5699999999999999999886543 699999998763 1
Q ss_pred hhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
..+.+|.|++|+||.-..
T Consensus 151 ----------~~~~fD~Vi~npPy~~~~ 168 (251)
T TIGR03534 151 ----------PGGKFDLIVSNPPYIPEA 168 (251)
T ss_pred ----------cCCceeEEEECCCCCchh
Confidence 235799999999997544
No 49
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.06 E-value=1.4e-09 Score=102.82 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=68.0
Q ss_pred HHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450 129 INDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 129 v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~ 205 (371)
+++.++..+.. ..+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++|...++ ++++++|+.+....
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~D~~~~l~~--- 148 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-GTVHEGDLYDALPT--- 148 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CEEEEeechhhcch---
Confidence 34444443332 23458999999999999999875 4689999999999999999987543 68899998763211
Q ss_pred hhHHHhhccCCCeeEEEecCCCcccH
Q 017450 206 LSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
...+.+|+||+|+||.-+.
T Consensus 149 -------~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 149 -------ALRGRVDILAANAPYVPTD 167 (251)
T ss_pred -------hcCCCEeEEEECCCCCCch
Confidence 0124699999999996543
No 50
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.05 E-value=4.8e-10 Score=103.50 Aligned_cols=151 Identities=22% Similarity=0.282 Sum_probs=96.2
Q ss_pred HHHHhcCCCcccccCcccCCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450 106 KALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 106 ~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~ 182 (371)
+.+......+...+.+--.+++.-...|.+.+.. .++.+|||||||-|.|+..||+.|++|+|+|+++++++.|+..
T Consensus 21 ~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 21 EALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLH 100 (243)
T ss_pred HHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHh
Confidence 3444444455556666555555555556555553 4788999999999999999999999999999999999999988
Q ss_pred hccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCCcccHHH-----HHHhc-cCCCch---------h
Q 017450 183 FASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPFNISTDV-----IKQLL-PMGDIF---------S 245 (371)
Q Consensus 183 ~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy~iss~i-----l~~Ll-~~g~~~---------~ 245 (371)
....+ +++.....+.++.. ..++||+|++. .--+++.|- ..+++ ++|..+ .
T Consensus 101 a~e~gv~i~y~~~~~edl~~------------~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 101 ALESGVNIDYRQATVEDLAS------------AGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred hhhccccccchhhhHHHHHh------------cCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 76544 44455555555421 23689999875 222333221 22333 333322 2
Q ss_pred HHHHHhhhhHHhhhccCCCCCCCCc
Q 017450 246 EVVLLLQEETALRLVEPSLRTSEYR 270 (371)
Q Consensus 246 ~~~lmvQke~a~rl~~a~pg~k~Yg 270 (371)
.+...++-|...|+. ..|++.|+
T Consensus 169 ~~~~i~~ae~vl~~v--P~gTH~~~ 191 (243)
T COG2227 169 YLLAIIGAEYVLRIV--PKGTHDYR 191 (243)
T ss_pred HHHHHHHHHHHHHhc--CCcchhHH
Confidence 344455566666655 34566664
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=2.1e-10 Score=102.92 Aligned_cols=138 Identities=18% Similarity=0.296 Sum_probs=95.4
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHH
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFE 210 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~ 210 (371)
.|.+++ .++.+|||+|||.|.+..+|.+. +.+.+|||+|++.+..+.++ .+.++++|+.+- +..
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~g-L~~------- 70 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEG-LAD------- 70 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHh-Hhh-------
Confidence 344444 47899999999999999999884 78999999999999888776 788999999873 211
Q ss_pred hhccCCCeeEEEecCCCcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCc-ceeeeeeeeccceEEEEeC
Q 017450 211 RRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYR-PINIFVNFYSEPEYKFKVP 289 (371)
Q Consensus 211 ~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg-~Lsv~~q~~~~~~~~~~Vp 289 (371)
.+...||.|| .++.+.++......+.+|. .++.+.+...|+...|. ++.++ +.-+.|
T Consensus 71 --f~d~sFD~VI-------lsqtLQ~~~~P~~vL~Eml-----RVgr~~IVsFPNFg~W~~R~~l~--------~~GrmP 128 (193)
T PF07021_consen 71 --FPDQSFDYVI-------LSQTLQAVRRPDEVLEEML-----RVGRRAIVSFPNFGHWRNRLQLL--------LRGRMP 128 (193)
T ss_pred --CCCCCccEEe-------hHhHHHhHhHHHHHHHHHH-----HhcCeEEEEecChHHHHHHHHHH--------hcCCCC
Confidence 2457899988 5566666655444455543 34444443556554443 22222 234688
Q ss_pred CCCcccCCCCceEEEEE
Q 017450 290 RTNFFPQPKVDAAVVTF 306 (371)
Q Consensus 290 ~~~F~P~PkVdS~vv~l 306 (371)
-+...|.+..|+--+++
T Consensus 129 vt~~lPy~WYdTPNih~ 145 (193)
T PF07021_consen 129 VTKALPYEWYDTPNIHL 145 (193)
T ss_pred CCCCCCCcccCCCCccc
Confidence 88889988888765554
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.04 E-value=9.1e-10 Score=104.71 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~ 203 (371)
.-++.+++.+.+++|++|||||||.|.++..+|+. +.+|+|+++|+++.+.+++++...+ +++++..|..+++
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--- 135 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--- 135 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---
Confidence 34667888999999999999999999999999998 8999999999999999999887543 8999999988863
Q ss_pred hhhhHHHhhccCCCeeEEEe
Q 017450 204 HMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVa 223 (371)
+.||.|||
T Consensus 136 ------------e~fDrIvS 143 (283)
T COG2230 136 ------------EPFDRIVS 143 (283)
T ss_pred ------------cccceeee
Confidence 34999995
No 53
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.04 E-value=1.1e-09 Score=106.35 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=63.7
Q ss_pred CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+.. ....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l-------------~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL-------------PGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-------------CCCC
Confidence 68999999999999999986 4699999999999999999987543 6999999986521 1246
Q ss_pred eeEEEecCCCcccH
Q 017450 218 FAKVVANIPFNIST 231 (371)
Q Consensus 218 ~d~VVaNlPy~iss 231 (371)
+|.|++|+||.-..
T Consensus 202 fDlIvsNPPyi~~~ 215 (307)
T PRK11805 202 YDLIVSNPPYVDAE 215 (307)
T ss_pred ccEEEECCCCCCcc
Confidence 99999999996543
No 54
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.04 E-value=1.4e-09 Score=104.60 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhh
Q 017450 129 INDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIR 202 (371)
Q Consensus 129 v~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~ 202 (371)
++..++..+.... +.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++...++ +++++.+|+.+. +
T Consensus 101 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~- 178 (284)
T TIGR00536 101 LVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L- 178 (284)
T ss_pred HHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C-
Confidence 3444444332223 369999999999999999986 3699999999999999999987543 499999998762 1
Q ss_pred hhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlPy~iss~ 232 (371)
....+|+||+|+||--.++
T Consensus 179 -----------~~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 179 -----------AGQKIDIIVSNPPYIDEED 197 (284)
T ss_pred -----------cCCCccEEEECCCCCCcch
Confidence 1236999999999965543
No 55
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.03 E-value=8.4e-10 Score=103.15 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~ 201 (371)
..+.+.+++.+...+|.+|||+|||||.+|..+++. ..+|+++|+++.|++.++++.... .+++++++|+.++++
T Consensus 33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 344456666777888999999999999999999986 258999999999999999998754 389999999999987
Q ss_pred hhhhhhHHHhhccCCCeeEEEecC
Q 017450 202 RSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 202 ~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
. .+.||.|++..
T Consensus 113 ~------------d~sfD~v~~~f 124 (233)
T PF01209_consen 113 P------------DNSFDAVTCSF 124 (233)
T ss_dssp -------------TT-EEEEEEES
T ss_pred C------------CCceeEEEHHh
Confidence 4 36799888643
No 56
>PLN02244 tocopherol O-methyltransferase
Probab=99.03 E-value=1.7e-09 Score=106.54 Aligned_cols=87 Identities=18% Similarity=0.191 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcC-----CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450 128 EINDQLAAAAAV-----QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (371)
Q Consensus 128 ~v~~~i~~~l~~-----~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~ 198 (371)
.+++.+++.+.+ .++++|||||||+|.++..+++. +++|+|||+++.+++.++++.... ++++++.+|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 466777777776 67889999999999999999986 789999999999999999887643 379999999988
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
+++. .+.||+|+++.-
T Consensus 180 ~~~~------------~~~FD~V~s~~~ 195 (340)
T PLN02244 180 QPFE------------DGQFDLVWSMES 195 (340)
T ss_pred CCCC------------CCCccEEEECCc
Confidence 7652 367999998643
No 57
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.03 E-value=7.8e-10 Score=104.40 Aligned_cols=83 Identities=25% Similarity=0.339 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.++++ +++++++|+.++.
T Consensus 18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~------- 85 (255)
T PRK14103 18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK------- 85 (255)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC-------
Confidence 456777777778899999999999999999987 67999999999999999764 6889999987652
Q ss_pred HHHhhccCCCeeEEEecCCCccc
Q 017450 208 LFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy~is 230 (371)
..+.||.|++|..++..
T Consensus 86 ------~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 86 ------PKPDTDVVVSNAALQWV 102 (255)
T ss_pred ------CCCCceEEEEehhhhhC
Confidence 13579999999876543
No 58
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.02 E-value=1.6e-09 Score=87.54 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=61.7
Q ss_pred EEEEcCcccHHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 145 VLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 145 VLEIG~G~G~lt~~La~~~-----~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
|||+|||+|..+..+++.. .+++++|+|++|++.++++....+ +++++++|+.+++.. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~------------~~~~ 68 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS------------DGKF 68 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH------------SSSE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc------------CCCe
Confidence 7999999999999999873 799999999999999999986543 899999999987642 3589
Q ss_pred eEEEe-cC-CCcccHHHHHHh
Q 017450 219 AKVVA-NI-PFNISTDVIKQL 237 (371)
Q Consensus 219 d~VVa-Nl-Py~iss~il~~L 237 (371)
|+|++ +. ..+++.+-+..+
T Consensus 69 D~v~~~~~~~~~~~~~~~~~l 89 (101)
T PF13649_consen 69 DLVVCSGLSLHHLSPEELEAL 89 (101)
T ss_dssp EEEEE-TTGGGGSSHHHHHHH
T ss_pred eEEEEcCCccCCCCHHHHHHH
Confidence 99998 33 233555444443
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.02 E-value=1.8e-09 Score=97.07 Aligned_cols=72 Identities=19% Similarity=0.328 Sum_probs=60.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
++++|||||||+|.++..++.. +.+|+|||.++.|++.++++.+.. ++++++++|+.++. ..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-------------~~~ 108 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-------------HEE 108 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-------------ccC
Confidence 4789999999999999999875 358999999999999999887654 37999999998752 135
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
.+|.|++|.
T Consensus 109 ~fD~I~s~~ 117 (181)
T TIGR00138 109 QFDVITSRA 117 (181)
T ss_pred CccEEEehh
Confidence 799999885
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.01 E-value=2.1e-09 Score=105.85 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=67.6
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhh
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~ 207 (371)
..+++.+......+|||+|||+|.++..+++.. .+|+++|+++.+++.++++++.++ ..+++.+|+.+.
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-------- 257 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-------- 257 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--------
Confidence 445555554455689999999999999999874 589999999999999999987654 456777887542
Q ss_pred HHHhhccCCCeeEEEecCCCcc
Q 017450 208 LFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy~i 229 (371)
..+.||.||+|+||+.
T Consensus 258 ------~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 258 ------IKGRFDMIISNPPFHD 273 (342)
T ss_pred ------cCCCccEEEECCCccC
Confidence 1357999999999974
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.01 E-value=1.6e-09 Score=103.54 Aligned_cols=81 Identities=26% Similarity=0.383 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~ 203 (371)
..++.+++.+.+++|++|||||||.|.++..+++. |++|+||.++++..+.+++++...+ ++++..+|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---
Confidence 44677888999999999999999999999999998 9999999999999999999988654 7899999987753
Q ss_pred hhhhHHHhhccCCCeeEEEe
Q 017450 204 HMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVa 223 (371)
++||.||+
T Consensus 126 ------------~~fD~IvS 133 (273)
T PF02353_consen 126 ------------GKFDRIVS 133 (273)
T ss_dssp -------------S-SEEEE
T ss_pred ------------CCCCEEEE
Confidence 37999986
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.00 E-value=2.2e-09 Score=97.09 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+.++.+|||||||+|.++..++.. +++|+++|+++.|++.|+++.+..+ +++++++|+.++..
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------------- 109 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------------- 109 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence 345789999999999999999874 5799999999999999999887654 69999999988642
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.++||.|++|.
T Consensus 110 ~~~fDlV~~~~ 120 (187)
T PRK00107 110 EEKFDVVTSRA 120 (187)
T ss_pred CCCccEEEEcc
Confidence 25799999874
No 63
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=1.7e-09 Score=102.07 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=68.5
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhh
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~ 207 (371)
..+++.+. .++.+|||||||+|.++..+++.+.+|+++|++++|++.|+++.... ++++++++|+.++...
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~----- 108 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH----- 108 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----
Confidence 45555555 45679999999999999999999999999999999999999988654 3789999999876321
Q ss_pred HHHhhccCCCeeEEEecCCC
Q 017450 208 LFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy 227 (371)
..+.||+|+++..+
T Consensus 109 ------~~~~fD~V~~~~vl 122 (255)
T PRK11036 109 ------LETPVDLILFHAVL 122 (255)
T ss_pred ------cCCCCCEEEehhHH
Confidence 23579999976543
No 64
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.00 E-value=3e-09 Score=101.01 Aligned_cols=90 Identities=22% Similarity=0.329 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhc-c-CCCeEEEEcccccchhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFA-S-IDQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~-~-~~~v~vi~gD~~~~~~~~ 203 (371)
.+++.+.......++.+|||+|||+|.++..++... .+|+|+|+++.+++.+++++. . ..+++++++|+.+..
T Consensus 95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--- 171 (275)
T PRK09328 95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--- 171 (275)
T ss_pred HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---
Confidence 445555545555677899999999999999999874 789999999999999999986 2 237999999985531
Q ss_pred hhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
..+.+|+|++|+||.-.
T Consensus 172 ----------~~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 172 ----------PGGRFDLIVSNPPYIPE 188 (275)
T ss_pred ----------CCCceeEEEECCCcCCc
Confidence 12579999999999544
No 65
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.00 E-value=2.1e-09 Score=107.25 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=80.7
Q ss_pred cCCCHHHHHHHHHH----hcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450 123 YMLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~----l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~ 196 (371)
|-++..+.+.+.+. +...++.+|||+|||+|.++..++..+.+|+|||+|+.+++.|+++.+.++ +++++.+|+
T Consensus 211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~ 290 (374)
T TIGR02085 211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS 290 (374)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 56677777766653 333456899999999999999999888899999999999999999987654 799999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCcc-cHHHHHHhc
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i-ss~il~~Ll 238 (371)
.+.... ....+|+||.||||.- ...++..+.
T Consensus 291 ~~~~~~-----------~~~~~D~vi~DPPr~G~~~~~l~~l~ 322 (374)
T TIGR02085 291 AKFATA-----------QMSAPELVLVNPPRRGIGKELCDYLS 322 (374)
T ss_pred HHHHHh-----------cCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 765311 1135899999999964 344444443
No 66
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.99 E-value=7.5e-10 Score=100.34 Aligned_cols=96 Identities=20% Similarity=0.287 Sum_probs=77.2
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l 208 (371)
..++..+......+|.|+|||+|.+|..|+++ ++.|+|||-|++|++.|+.+. +++++..+|+.++.
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~-------- 88 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK-------- 88 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--------
Confidence 45666777778899999999999999999998 789999999999999998876 48999999998874
Q ss_pred HHhhccCCCeeEEEecCCCcccH-------HHHHHhccCCC
Q 017450 209 FERRKSSSGFAKVVANIPFNIST-------DVIKQLLPMGD 242 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy~iss-------~il~~Ll~~g~ 242 (371)
.....|++++|--+++.. .++.+|.++|-
T Consensus 89 -----p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 89 -----PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGV 124 (257)
T ss_pred -----CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCce
Confidence 335689999997766543 34445555543
No 67
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.97 E-value=3.2e-09 Score=107.77 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~ 206 (371)
+.+.+.+.+...++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..++ +++++.+|+.+....
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~---- 355 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK---- 355 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH----
Confidence 44555666666778899999999999999999988899999999999999999987543 899999999764211
Q ss_pred hHHHhhccCCCeeEEEecCCCcc-cHHHHHHhc
Q 017450 207 SLFERRKSSSGFAKVVANIPFNI-STDVIKQLL 238 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNlPy~i-ss~il~~Ll 238 (371)
+. .....+|+|+.|+|+.- ...++..+.
T Consensus 356 -~~---~~~~~~D~vi~dPPr~G~~~~~l~~l~ 384 (431)
T TIGR00479 356 -QP---WAGQIPDVLLLDPPRKGCAAEVLRTII 384 (431)
T ss_pred -HH---hcCCCCCEEEECcCCCCCCHHHHHHHH
Confidence 00 01245899999999854 455655443
No 68
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=3.1e-09 Score=109.93 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=64.7
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+.. ..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------~~ 204 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------EK 204 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------------cC
Confidence 3468999999999999999875 5799999999999999999986543 6899999986521 12
Q ss_pred CCeeEEEecCCCcccHH
Q 017450 216 SGFAKVVANIPFNISTD 232 (371)
Q Consensus 216 ~~~d~VVaNlPy~iss~ 232 (371)
..||+||+|+||...++
T Consensus 205 ~~fDlIvsNPPYi~~~~ 221 (506)
T PRK01544 205 QKFDFIVSNPPYISHSE 221 (506)
T ss_pred CCccEEEECCCCCCchh
Confidence 46999999999976543
No 69
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.96 E-value=2.3e-09 Score=103.98 Aligned_cols=106 Identities=24% Similarity=0.352 Sum_probs=76.0
Q ss_pred CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH---------hCCeEEEEeCCHHHHHHHHHHhc
Q 017450 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN---------AGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 114 ~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~---------~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
..++..|| |.++..+++.|+..+...++++|+|..||+|.+...+.+ ...+++|+|+|+.++..++-++.
T Consensus 20 ~~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 20 ESRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp CTTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred Hhccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 45678899 889999999999999988899999999999998877765 24589999999999999887764
Q ss_pred cCC----CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 185 SID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 185 ~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
-.+ +..+..+|.+..+... ....+|+|++||||...
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~----------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFI----------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCT----------ST--EEEEEEE--CTCE
T ss_pred hhccccccccccccccccccccc----------cccccccccCCCCcccc
Confidence 222 4568899987654321 13579999999999765
No 70
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.96 E-value=3.5e-09 Score=99.88 Aligned_cols=85 Identities=19% Similarity=0.354 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~ 206 (371)
....++..+...++++|||||||+|.++..+++. +.+|+|||+++.|++.+++++ ++++++.+|+.++.
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~------ 89 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ------ 89 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC------
Confidence 4556777777778899999999999999999986 579999999999999999886 37889999987653
Q ss_pred hHHHhhccCCCeeEEEecCCCcc
Q 017450 207 SLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
....+|.|++|..++.
T Consensus 90 -------~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 90 -------PPQALDLIFANASLQW 105 (258)
T ss_pred -------CCCCccEEEEccChhh
Confidence 1247999999977644
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.95 E-value=5.2e-09 Score=96.43 Aligned_cols=82 Identities=27% Similarity=0.347 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450 128 EINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (371)
Q Consensus 128 ~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~ 202 (371)
.+...+++.+. ..++++|||||||+|.++..++..+.+|+|+|+++.|+..|++++... .++++.++|+.+.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 44556666665 457889999999999999999998889999999999999999988643 27899999987752
Q ss_pred hhhhhHHHhhccCCCeeEEEec
Q 017450 203 SHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaN 224 (371)
+.||.|+++
T Consensus 118 -------------~~fD~ii~~ 126 (219)
T TIGR02021 118 -------------GEFDIVVCM 126 (219)
T ss_pred -------------CCcCEEEEh
Confidence 468988864
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.94 E-value=2.5e-09 Score=97.66 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=61.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccc-ccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDF-VKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~-~~~~~~~~~~~l~~~~~~~ 215 (371)
++.+|||||||+|.++..+++. +.+|+|||+++.+++.++++.... ++++++++|+ ..++.. ...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~----------~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM----------FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH----------cCc
Confidence 5679999999999999999886 468999999999999999987644 4899999999 544310 123
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
..+|.|+.|.|
T Consensus 110 ~~~D~V~~~~~ 120 (202)
T PRK00121 110 GSLDRIYLNFP 120 (202)
T ss_pred cccceEEEECC
Confidence 56999999865
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.94 E-value=1.2e-08 Score=92.87 Aligned_cols=94 Identities=21% Similarity=0.316 Sum_probs=75.5
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD 195 (371)
..++.+++....+..+.+.++++|||+|||+|.++..++.. +.+|+++|+++.+++.+++++..++ +++++.+|
T Consensus 21 ~~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d 100 (198)
T PRK00377 21 IPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100 (198)
T ss_pred CCCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 45777788777788888999999999999999999998864 3589999999999999999876543 78999999
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
+.+.... ..+.+|.|+.+..
T Consensus 101 ~~~~l~~-----------~~~~~D~V~~~~~ 120 (198)
T PRK00377 101 APEILFT-----------INEKFDRIFIGGG 120 (198)
T ss_pred hhhhHhh-----------cCCCCCEEEECCC
Confidence 8764211 1256899998653
No 74
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.93 E-value=6.3e-09 Score=94.21 Aligned_cols=98 Identities=18% Similarity=0.209 Sum_probs=74.1
Q ss_pred cCCCHHHHHHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~ 197 (371)
..++..+.+.+...+. ...+.+|||++||+|.++..++.+|+ +|++||.|+.+++.+++|++..+ +++++.+|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 4556666666666553 23578999999999999999999976 89999999999999999987543 6899999996
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
+.-.. +. .....+|+|+.+|||.
T Consensus 110 ~~l~~-----~~---~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 110 RALKF-----LA---KKPTFDNVIYLDPPFF 132 (189)
T ss_pred HHHHH-----hh---ccCCCceEEEECcCCC
Confidence 64210 00 0123479999999995
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.92 E-value=4.2e-09 Score=94.52 Aligned_cols=96 Identities=20% Similarity=0.258 Sum_probs=73.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--Ce---------EEEEeCCHHHHHHHHHHhccCC---C
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--AT---------VLAIEKDQHMVGLVRERFASID---Q 188 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~---------V~aIE~d~~~i~~a~~~~~~~~---~ 188 (371)
--+++.++..|+..+...+++.|||.-||+|.+....+..+ .. ++|.|+|+++++.+++|+...+ .
T Consensus 10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~ 89 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY 89 (179)
T ss_dssp TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence 45778999999999999999999999999999988777653 23 7899999999999999997654 6
Q ss_pred eEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 189 v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
+.+.++|+.++++ ..+.+|.||+|+||...
T Consensus 90 i~~~~~D~~~l~~------------~~~~~d~IvtnPPyG~r 119 (179)
T PF01170_consen 90 IDFIQWDARELPL------------PDGSVDAIVTNPPYGRR 119 (179)
T ss_dssp EEEEE--GGGGGG------------TTSBSCEEEEE--STTS
T ss_pred eEEEecchhhccc------------ccCCCCEEEECcchhhh
Confidence 8899999999873 23578999999999764
No 76
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.92 E-value=6.4e-09 Score=97.87 Aligned_cols=74 Identities=22% Similarity=0.346 Sum_probs=61.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|++++... .+++++++|+.++++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----------- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------
Confidence 46789999999999999988872 579999999999999999998753 279999999987643
Q ss_pred ccCCCeeEEEecCCC
Q 017450 213 KSSSGFAKVVANIPF 227 (371)
Q Consensus 213 ~~~~~~d~VVaNlPy 227 (371)
+.+|.|++|..+
T Consensus 124 ---~~~D~vv~~~~l 135 (247)
T PRK15451 124 ---ENASMVVLNFTL 135 (247)
T ss_pred ---CCCCEEehhhHH
Confidence 347888887654
No 77
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.91 E-value=3.3e-09 Score=97.65 Aligned_cols=92 Identities=22% Similarity=0.290 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEE-cc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQ-ED 195 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~-gD 195 (371)
.+..++....+..++...++++|||||+++|++|.+||.. ..++++||+|+++++.|+++++..+ .+.++. ||
T Consensus 41 pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 41 PIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred CCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 4445888888888888889999999999999999999985 3589999999999999999998765 588888 58
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
+++.-.. ...+.||.|+..
T Consensus 121 al~~l~~----------~~~~~fDliFID 139 (219)
T COG4122 121 ALDVLSR----------LLDGSFDLVFID 139 (219)
T ss_pred HHHHHHh----------ccCCCccEEEEe
Confidence 8875321 124789999864
No 78
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.1e-09 Score=100.39 Aligned_cols=99 Identities=25% Similarity=0.351 Sum_probs=68.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-C--eEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-Q--LKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~--v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
++.+|||+|||+|.|++..++.|+ +|+|+|+|+-.++.+++|...++ . ++.-..+..+. ....
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-------------~~~~ 228 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-------------PENG 228 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-------------cccC
Confidence 889999999999999999999987 69999999999999999988654 1 12222222222 1235
Q ss_pred CeeEEEecCCCcc----cHHHHHHhccCCCchhHHHHHhh
Q 017450 217 GFAKVVANIPFNI----STDVIKQLLPMGDIFSEVVLLLQ 252 (371)
Q Consensus 217 ~~d~VVaNlPy~i----ss~il~~Ll~~g~~~~~~~lmvQ 252 (371)
++|+||+|+-=.+ ..++...+.++|.++-+.++--|
T Consensus 229 ~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q 268 (300)
T COG2264 229 PFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQ 268 (300)
T ss_pred cccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhH
Confidence 8999999973211 22334455555655544444433
No 79
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.91 E-value=5.8e-09 Score=101.87 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=61.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++.+|||||||+|.++..+++.|++|+|||.++++++.|+++.... .+++++++|+.+++. ..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------------~~~ 197 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------------EGR 197 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------------ccC
Confidence 35679999999999999999998999999999999999999876532 378999999987653 235
Q ss_pred CeeEEEec
Q 017450 217 GFAKVVAN 224 (371)
Q Consensus 217 ~~d~VVaN 224 (371)
.||+|++.
T Consensus 198 ~FD~Vi~~ 205 (322)
T PLN02396 198 KFDAVLSL 205 (322)
T ss_pred CCCEEEEh
Confidence 79999864
No 80
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.91 E-value=3.7e-09 Score=109.96 Aligned_cols=106 Identities=15% Similarity=0.267 Sum_probs=80.5
Q ss_pred cccCcccCCCHHHHHHHHHHhcCC-------CCCEEEEEcCcccHHHHHHHHhC----------CeEEEEeCCHHHHHHH
Q 017450 117 KSLGQHYMLNSEINDQLAAAAAVQ-------EGDIVLEIGPGTGSLTNVLLNAG----------ATVLAIEKDQHMVGLV 179 (371)
Q Consensus 117 k~lGQ~fl~~~~v~~~i~~~l~~~-------~~~~VLEIG~G~G~lt~~La~~~----------~~V~aIE~d~~~i~~a 179 (371)
|..|| |.|++.+++.|++.+... .+.+|||.|||+|.+...++... .+++|+|+|+..+..+
T Consensus 1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a 79 (524)
T TIGR02987 1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA 79 (524)
T ss_pred CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence 56899 999999999999887432 34589999999999998887631 4689999999999999
Q ss_pred HHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 180 RERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 180 ~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
+.++...+ .+.+.++|.+...+... . ...+.||+||+||||.-.
T Consensus 80 ~~~l~~~~~~~~~i~~~d~l~~~~~~~-----~--~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 80 KKLLGEFALLEINVINFNSLSYVLLNI-----E--SYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHHHhhcCCCCceeeeccccccccccc-----c--cccCcccEEEeCCCcccc
Confidence 99886654 56777788765332100 0 113579999999999643
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.91 E-value=6.5e-09 Score=100.01 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
.++.+|||+|||+|..+..+++.|.+|+|+|+++.+++.++++....+ ++++..+|+...++ .+.|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-------------~~~f 185 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-------------QEEY 185 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-------------cCCc
Confidence 345699999999999999999999999999999999999998876544 78888888766432 2569
Q ss_pred eEEEecCCC
Q 017450 219 AKVVANIPF 227 (371)
Q Consensus 219 d~VVaNlPy 227 (371)
|.|+++..+
T Consensus 186 D~I~~~~vl 194 (287)
T PRK12335 186 DFILSTVVL 194 (287)
T ss_pred cEEEEcchh
Confidence 999987654
No 82
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.90 E-value=1.1e-08 Score=93.85 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=59.8
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
..++.+|||||||+|.++..+++. +.+++|||+++.|++.|+++.. +++++++|+.+ ++ ...
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~---~~~~~~~d~~~-~~------------~~~ 104 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP---NINIIQGSLFD-PF------------KDN 104 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC---CCcEEEeeccC-CC------------CCC
Confidence 346779999999999999999886 5799999999999999998753 67888999877 33 236
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
.||+|++|--
T Consensus 105 sfD~V~~~~v 114 (204)
T TIGR03587 105 FFDLVLTKGV 114 (204)
T ss_pred CEEEEEECCh
Confidence 7999997654
No 83
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.90 E-value=1e-08 Score=99.84 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=62.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC----CeEEEE-cccccchhhhhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID----QLKVLQ-EDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~-gD~~~~~~~~~~~~l~~~~~ 213 (371)
.+.+|||||||+|.+...|+.. +.+++|+|+|+.+++.|+++++.++ +++++. .|..++... +. .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~-----i~---~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKG-----II---H 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhc-----cc---c
Confidence 4579999999999888888765 6799999999999999999998763 566654 333222100 00 1
Q ss_pred cCCCeeEEEecCCCcccHH
Q 017450 214 SSSGFAKVVANIPFNISTD 232 (371)
Q Consensus 214 ~~~~~d~VVaNlPy~iss~ 232 (371)
..+.||.|++||||+.+.+
T Consensus 186 ~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 186 KNERFDATLCNPPFHASAA 204 (321)
T ss_pred cCCceEEEEeCCCCcCcch
Confidence 2357999999999987754
No 84
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=7.7e-09 Score=98.77 Aligned_cols=91 Identities=22% Similarity=0.335 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~ 205 (371)
.+.+++.+....+.+|||+|||.|.+++.+++.. .+|+-+|+|...++.+++|...++ +..++..|..+-
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~------ 220 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP------ 220 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc------
Confidence 4567777777766799999999999999999985 589999999999999999998653 435677776542
Q ss_pred hhHHHhhccCCCeeEEEecCCCcccHHHH
Q 017450 206 LSLFERRKSSSGFAKVVANIPFNISTDVI 234 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il 234 (371)
..++||.||+||||+-...+.
T Consensus 221 --------v~~kfd~IisNPPfh~G~~v~ 241 (300)
T COG2813 221 --------VEGKFDLIISNPPFHAGKAVV 241 (300)
T ss_pred --------ccccccEEEeCCCccCCcchh
Confidence 124799999999997654443
No 85
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.90 E-value=7.3e-09 Score=93.93 Aligned_cols=76 Identities=21% Similarity=0.360 Sum_probs=66.9
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~ 198 (371)
.++...+...+++.+.+.++++|||+|||+|.++..++.. +.+|+++|+|+++++.+++++... .+++++.+|+.+
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 5778888888999998888999999999999999999865 479999999999999999998654 379999999865
No 86
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.89 E-value=6.6e-09 Score=81.49 Aligned_cols=70 Identities=27% Similarity=0.425 Sum_probs=57.5
Q ss_pred EEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 146 LEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
||+|||+|..+..+++. +.+|+++|+++.+++.++++... .++.+..+|+.++++. .+.+|.|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~~~------------~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLPFP------------DNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSSS-------------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCccc------------cccccccccc
Confidence 89999999999999999 88999999999999999998864 3577999999998763 4679999987
Q ss_pred CCCc
Q 017450 225 IPFN 228 (371)
Q Consensus 225 lPy~ 228 (371)
--++
T Consensus 68 ~~~~ 71 (95)
T PF08241_consen 68 SVLH 71 (95)
T ss_dssp SHGG
T ss_pred ccee
Confidence 5543
No 87
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.88 E-value=8.6e-09 Score=96.42 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=76.0
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
..+++.....+...+...++++|||||||+|+.+.+++.. +.+|+++|+|+++++.|+++++..+ +++++.||+
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 3567777777777777778899999999999999999875 4699999999999999999997654 799999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
.+.-.. +.++ ...+.||.|+.+.+
T Consensus 130 ~~~L~~-----l~~~-~~~~~fD~VfiDa~ 153 (234)
T PLN02781 130 LSALDQ-----LLNN-DPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHH-----HHhC-CCCCCCCEEEECCC
Confidence 875211 1100 01357999998753
No 88
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.88 E-value=1.6e-08 Score=96.49 Aligned_cols=89 Identities=13% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC-----CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAG-----ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~-----~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
..+.+|||||||+|.++..+++.. ..|+|+|+++.+++.|+++. ++++++.+|+.++++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp~~------------ 148 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLPFA------------ 148 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCCCc------------
Confidence 355789999999999999998752 37999999999999998774 4789999999887653
Q ss_pred CCCeeEEEecCCCcccHHHHHHhccCCCc
Q 017450 215 SSGFAKVVANIPFNISTDVIKQLLPMGDI 243 (371)
Q Consensus 215 ~~~~d~VVaNlPy~iss~il~~Ll~~g~~ 243 (371)
.+.+|+|+++..-....++.+.|.++|.+
T Consensus 149 ~~sfD~I~~~~~~~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 149 DQSLDAIIRIYAPCKAEELARVVKPGGIV 177 (272)
T ss_pred CCceeEEEEecCCCCHHHHHhhccCCCEE
Confidence 35799999865323334555555555544
No 89
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.88 E-value=1.3e-09 Score=101.44 Aligned_cols=75 Identities=27% Similarity=0.393 Sum_probs=58.2
Q ss_pred CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--------CeEEEEcccccchhhhhhhhHHHhhc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--------QLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--------~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
|.+|||+|||+|.++..||+.|+.|+|||.++.|++.|++.....| ++++.+.|+...
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------------- 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------------- 155 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------------
Confidence 5789999999999999999999999999999999999999843332 244555665553
Q ss_pred cCCCeeEEEecCCCcccHHHHHHhc
Q 017450 214 SSSGFAKVVANIPFNISTDVIKQLL 238 (371)
Q Consensus 214 ~~~~~d~VVaNlPy~iss~il~~Ll 238 (371)
.+.||.|| ++++++|..
T Consensus 156 -~~~fDaVv-------csevleHV~ 172 (282)
T KOG1270|consen 156 -TGKFDAVV-------CSEVLEHVK 172 (282)
T ss_pred -ccccceee-------eHHHHHHHh
Confidence 25599999 455555543
No 90
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.88 E-value=1.5e-08 Score=104.06 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=77.9
Q ss_pred cccCcccCCCHHH--HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC-CCeEEE
Q 017450 117 KSLGQHYMLNSEI--NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI-DQLKVL 192 (371)
Q Consensus 117 k~lGQ~fl~~~~v--~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi 192 (371)
..+|..|.+++.+ .+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++.... .+++++
T Consensus 240 ~f~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~ 319 (475)
T PLN02336 240 RVFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFE 319 (475)
T ss_pred HHhCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEE
Confidence 3466677777665 466777777778889999999999999999886 779999999999999999887543 378999
Q ss_pred EcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 193 QEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 193 ~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
.+|+.+.++. .+.||+|+++-
T Consensus 320 ~~d~~~~~~~------------~~~fD~I~s~~ 340 (475)
T PLN02336 320 VADCTKKTYP------------DNSFDVIYSRD 340 (475)
T ss_pred EcCcccCCCC------------CCCEEEEEECC
Confidence 9999876532 35799999863
No 91
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.87 E-value=1.6e-08 Score=101.53 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=73.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~ 197 (371)
+..|+......+..+. ++++|||+|||+|.++..++..++ +|++||+|+.+++.|++|+..++ +++++++|+.
T Consensus 204 ~flDqr~~R~~~~~~~--~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~ 281 (396)
T PRK15128 204 YYLDQRDSRLATRRYV--ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF 281 (396)
T ss_pred cChhhHHHHHHHHHhc--CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence 4444444444444442 578999999999999988776654 89999999999999999987543 6899999997
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCcccH
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST 231 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss 231 (371)
++... +. .....||+||.|+||...+
T Consensus 282 ~~l~~-----~~---~~~~~fDlVilDPP~f~~~ 307 (396)
T PRK15128 282 KLLRT-----YR---DRGEKFDVIVMDPPKFVEN 307 (396)
T ss_pred HHHHH-----HH---hcCCCCCEEEECCCCCCCC
Confidence 75211 10 1235799999999996543
No 92
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.86 E-value=7.8e-09 Score=99.63 Aligned_cols=79 Identities=30% Similarity=0.352 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
..++++|||+|||+|.|+...+..|+ +|+|+|+|+..++.|++|...++ ++.+. ...+. .
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~--------------~ 222 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL--------------V 222 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT--------------C
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc--------------c
Confidence 44778999999999999999999986 79999999999999999988664 34332 11111 2
Q ss_pred CCCeeEEEecCCCcccHHH
Q 017450 215 SSGFAKVVANIPFNISTDV 233 (371)
Q Consensus 215 ~~~~d~VVaNlPy~iss~i 233 (371)
..+||+|++|+-..+...+
T Consensus 223 ~~~~dlvvANI~~~vL~~l 241 (295)
T PF06325_consen 223 EGKFDLVVANILADVLLEL 241 (295)
T ss_dssp CS-EEEEEEES-HHHHHHH
T ss_pred cccCCEEEECCCHHHHHHH
Confidence 3679999999876554443
No 93
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.85 E-value=1.1e-08 Score=105.05 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~ 204 (371)
.+......+++.+...++++|||||||+|.++..+++.+.+|+|||+++.|++.+++.....++++++++|+.+..+.
T Consensus 21 ~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-- 98 (475)
T PLN02336 21 LDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-- 98 (475)
T ss_pred cCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC--
Confidence 333445677777777778899999999999999999998899999999999998876544445899999999753321
Q ss_pred hhhHHHhhccCCCeeEEEecCCCcc
Q 017450 205 MLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
.....+|+|+++.+++.
T Consensus 99 --------~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 99 --------ISDGSVDLIFSNWLLMY 115 (475)
T ss_pred --------CCCCCEEEEehhhhHHh
Confidence 12357999999987643
No 94
>PRK04266 fibrillarin; Provisional
Probab=98.84 E-value=2.3e-08 Score=93.10 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=64.9
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
.+.+.++++|||+|||+|..+..+++.. .+|+|+|+++.|++.+.++.....|+.++.+|+.+..... +
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~---~------ 137 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA---H------ 137 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh---h------
Confidence 5788899999999999999999999873 5899999999999988777665568999999987521100 0
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+.+|+|+++.+
T Consensus 138 l~~~~D~i~~d~~ 150 (226)
T PRK04266 138 VVEKVDVIYQDVA 150 (226)
T ss_pred ccccCCEEEECCC
Confidence 1245899998765
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.83 E-value=1.4e-08 Score=92.09 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=62.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++.... +|++++++|+.++.... ...+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~---------~~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF---------FPDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh---------CCCC
Confidence 4569999999999999999987 568999999999999999887654 48999999998754210 1234
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
.+|.|+.|.|
T Consensus 87 ~~d~v~~~~p 96 (194)
T TIGR00091 87 SLSKVFLNFP 96 (194)
T ss_pred ceeEEEEECC
Confidence 6999999976
No 96
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.83 E-value=2.6e-08 Score=93.06 Aligned_cols=74 Identities=20% Similarity=0.303 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.++.+|||||||+|.++..+++. +++++|+|+++.|++.|++++... .+++++++|+.++++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----------- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------
Confidence 46779999999999999999874 568999999999999999987653 268999999988753
Q ss_pred ccCCCeeEEEecCCC
Q 017450 213 KSSSGFAKVVANIPF 227 (371)
Q Consensus 213 ~~~~~~d~VVaNlPy 227 (371)
+.+|.|+++...
T Consensus 121 ---~~~d~v~~~~~l 132 (239)
T TIGR00740 121 ---KNASMVILNFTL 132 (239)
T ss_pred ---CCCCEEeeecch
Confidence 346788877653
No 97
>PRK05785 hypothetical protein; Provisional
Probab=98.83 E-value=1.2e-08 Score=94.83 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
++.+|||||||||.++..+++. +.+|+|+|++++|++.++++. ..+++|+.++++. .+.||
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp~~------------d~sfD 112 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALPFR------------DKSFD 112 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCCCC------------CCCEE
Confidence 4679999999999999999988 689999999999999998752 3578999888653 36799
Q ss_pred EEEecCC
Q 017450 220 KVVANIP 226 (371)
Q Consensus 220 ~VVaNlP 226 (371)
.|+++..
T Consensus 113 ~v~~~~~ 119 (226)
T PRK05785 113 VVMSSFA 119 (226)
T ss_pred EEEecCh
Confidence 9998754
No 98
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=84.68 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~ 206 (371)
.+.+.|.+.+...++.+|||||||+|. ++..|++.|.+|+|+|+++..++.++++ .++++.+|..+-++.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~---- 73 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLE---- 73 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHH----
Confidence 355667776666667899999999996 8889998899999999999999988776 478999999987653
Q ss_pred hHHHhhccCCCeeEEEe-cCCCcccHHHH
Q 017450 207 SLFERRKSSSGFAKVVA-NIPFNISTDVI 234 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVa-NlPy~iss~il 234 (371)
....+|.|.+ ++|-.+..+++
T Consensus 74 -------~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 74 -------IYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred -------HHhcCCEEEEeCCCHHHHHHHH
Confidence 1245788887 56655544444
No 99
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.7e-08 Score=98.10 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=87.6
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEc-ccccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQE-DFVKC 199 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~g-D~~~~ 199 (371)
--++|.++..+++++.+++|+.|||.-||||.+.....-.|++++|+|+|.+|++-++.|++.++ ...++.+ |+.++
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l 258 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL 258 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC
Confidence 56889999999999999999999999999999999988889999999999999999999998774 6667776 99999
Q ss_pred hhhhhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (371)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~ 232 (371)
++. ...+|.|+..+||..++.
T Consensus 259 pl~------------~~~vdaIatDPPYGrst~ 279 (347)
T COG1041 259 PLR------------DNSVDAIATDPPYGRSTK 279 (347)
T ss_pred CCC------------CCccceEEecCCCCcccc
Confidence 864 235999999999988763
No 100
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.83 E-value=1.4e-08 Score=93.02 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=73.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
..+++...+.+...+....+++|||||||+|++|.+|++. +++|+++|+|++.++.|++++...+ +++++.||+
T Consensus 27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 4456666666666666667889999999999999999985 5799999999999999999998654 899999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
.+.-.. +..+ ...+.||.|+-+-.
T Consensus 107 ~~~l~~-----l~~~-~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 107 LEVLPE-----LAND-GEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHH-----HHHT-TTTTSEEEEEEEST
T ss_pred HhhHHH-----HHhc-cCCCceeEEEEccc
Confidence 875321 1110 11357999997643
No 101
>PLN02672 methionine S-methyltransferase
Probab=98.83 E-value=1.3e-08 Score=112.10 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHhcCC-----CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC----------
Q 017450 124 MLNSEINDQLAAAAAVQ-----EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI---------- 186 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~-----~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~---------- 186 (371)
+++..-...+++.+... ++.+|||+|||+|.++..++... .+|+|+|+++++++.|++|...+
T Consensus 96 LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 96 FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 44444445555544322 24689999999999999999863 68999999999999999998642
Q ss_pred --------CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 187 --------DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 187 --------~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
.+++++++|+.+.... ....+|+||+|+||--.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~-----------~~~~fDlIVSNPPYI~~ 216 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRD-----------NNIELDRIVGCIPQILN 216 (1082)
T ss_pred ccccccccccEEEEECchhhhccc-----------cCCceEEEEECCCcCCC
Confidence 2689999998764210 11369999999998543
No 102
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.83 E-value=2.2e-08 Score=90.23 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=63.1
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+....-.++||+|||.|.+|..|+.++.+++++|+++..++.|+++....++|+++++|+.+.. +.
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-------------P~ 104 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW-------------PE 104 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----------------S
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-------------CC
Confidence 35545557999999999999999999988999999999999999999998889999999997753 34
Q ss_pred CCeeEEE-ecCCCcccH
Q 017450 216 SGFAKVV-ANIPFNIST 231 (371)
Q Consensus 216 ~~~d~VV-aNlPy~iss 231 (371)
+.||.|| +-+-|+++.
T Consensus 105 ~~FDLIV~SEVlYYL~~ 121 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDD 121 (201)
T ss_dssp S-EEEEEEES-GGGSSS
T ss_pred CCeeEEEEehHhHcCCC
Confidence 6788765 568888863
No 103
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=2e-08 Score=101.96 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccch
Q 017450 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCH 200 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~ 200 (371)
.++......++..+.+.++++|||+|||+|..|..+++.+ .+|+|+|+++.+++.++++++..+ +++++++|+.+.+
T Consensus 227 ~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~ 306 (427)
T PRK10901 227 SVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA 306 (427)
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch
Confidence 3344455566677888899999999999999999999874 589999999999999999998765 5789999998653
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
.. .....||.|+.|+|+..
T Consensus 307 ~~----------~~~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 307 QW----------WDGQPFDRILLDAPCSA 325 (427)
T ss_pred hh----------cccCCCCEEEECCCCCc
Confidence 10 12356999999999864
No 104
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.81 E-value=3.8e-08 Score=94.78 Aligned_cols=75 Identities=25% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|||+|||+|.++..++..+. +|+|+|+|+.+++.++++...++ ++.+..+|.... ..
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~--------------~~ 223 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP--------------IE 223 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc--------------cC
Confidence 4678999999999999999988764 89999999999999999987543 455666653221 23
Q ss_pred CCeeEEEecCCCc
Q 017450 216 SGFAKVVANIPFN 228 (371)
Q Consensus 216 ~~~d~VVaNlPy~ 228 (371)
..||+|++|+...
T Consensus 224 ~~fDlVvan~~~~ 236 (288)
T TIGR00406 224 GKADVIVANILAE 236 (288)
T ss_pred CCceEEEEecCHH
Confidence 5799999997543
No 105
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.1e-08 Score=93.43 Aligned_cols=162 Identities=22% Similarity=0.308 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccch
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCH 200 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~ 200 (371)
|.-+..|+..+++.+|++|||.|+|+|++|.+|+.. | .+|+++|+.++.++.|++|++..+ ++++..+|+.+.-
T Consensus 80 PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 80 PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI 159 (256)
T ss_pred CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc
Confidence 344677899999999999999999999999999974 3 599999999999999999998643 4889899998863
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCC--CcccHHHHHHhccCCCchhHHHHHhhhhHHhhhccCCCCCCCCcceeeeeee
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIP--FNISTDVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNF 278 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlP--y~iss~il~~Ll~~g~~~~~~~lmvQke~a~rl~~a~pg~k~Yg~Lsv~~q~ 278 (371)
. ...+|.||.++| ++....+-..|.+++......-.. |-.++...+ .....|..+ ..
T Consensus 160 ~-------------~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v---eQv~kt~~~-l~~~g~~~i----e~ 218 (256)
T COG2519 160 D-------------EEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV---EQVEKTVEA-LRERGFVDI----EA 218 (256)
T ss_pred c-------------ccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH---HHHHHHHHH-HHhcCccch----hh
Confidence 2 247999999986 455555556666665432211111 222222210 000112222 22
Q ss_pred eccceEEEEeCCCCcccCC-CC-ceEEEEEEEc
Q 017450 279 YSEPEYKFKVPRTNFFPQP-KV-DAAVVTFKLK 309 (371)
Q Consensus 279 ~~~~~~~~~Vp~~~F~P~P-kV-dS~vv~l~~~ 309 (371)
+.-...-+++.+.+.+|.- .| .++-+.+.++
T Consensus 219 ~E~l~R~~~v~~~~~RP~~~~v~HTgyivf~R~ 251 (256)
T COG2519 219 VETLVRRWEVRKEATRPETRMVGHTGYIVFARK 251 (256)
T ss_pred heeeeheeeecccccCcccccccceeEEEEEee
Confidence 2223344677888888863 22 4555666554
No 106
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.80 E-value=4e-08 Score=90.71 Aligned_cols=83 Identities=27% Similarity=0.273 Sum_probs=64.1
Q ss_pred HHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450 129 INDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (371)
Q Consensus 129 v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~ 202 (371)
..+.+...+. ..++.+|||||||+|.++..+++.+.+|+++|+++.+++.|++++... +++++..+|+..
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---- 123 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---- 123 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----
Confidence 3444444443 346789999999999999999998889999999999999999987654 268888888422
Q ss_pred hhhhhHHHhhccCCCeeEEEecCC
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
..+.||+|+++-.
T Consensus 124 -----------~~~~fD~v~~~~~ 136 (230)
T PRK07580 124 -----------LLGRFDTVVCLDV 136 (230)
T ss_pred -----------ccCCcCEEEEcch
Confidence 1256899987644
No 107
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.79 E-value=2.9e-08 Score=96.71 Aligned_cols=83 Identities=25% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-------CCeEEEEcccc
Q 017450 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-------DQLKVLQEDFV 197 (371)
Q Consensus 128 ~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-------~~v~vi~gD~~ 197 (371)
.+++.++..+.. .++.+|||||||+|.++..+++.|.+|+|+|+++.|++.++++.... .++++..+|+.
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 455666666653 25789999999999999999999999999999999999999987642 25677777765
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
++ .+.||.|+++-
T Consensus 208 ~l---------------~~~fD~Vv~~~ 220 (315)
T PLN02585 208 SL---------------SGKYDTVTCLD 220 (315)
T ss_pred hc---------------CCCcCEEEEcC
Confidence 43 25689888753
No 108
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.77 E-value=6e-08 Score=87.79 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=62.1
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHh
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
+++.+...++.++||+|||.|.-+.+||++|..|+|+|+++..++.+++.....+ .++....|+.+..+
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---------- 91 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---------- 91 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-----------
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc----------
Confidence 4455566677899999999999999999999999999999999999887765444 68888999887754
Q ss_pred hccCCCeeEEEecCC
Q 017450 212 RKSSSGFAKVVANIP 226 (371)
Q Consensus 212 ~~~~~~~d~VVaNlP 226 (371)
+..+|.|++...
T Consensus 92 ---~~~yD~I~st~v 103 (192)
T PF03848_consen 92 ---PEEYDFIVSTVV 103 (192)
T ss_dssp ---TTTEEEEEEESS
T ss_pred ---cCCcCEEEEEEE
Confidence 256899987533
No 109
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.77 E-value=7e-08 Score=90.74 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccccc
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVK 198 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~ 198 (371)
+=+.-+..|+..+++.+|++|||.|+|+|.+|..|+.. ..+|++.|+.++.++.|+++++..+ ++++.++|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 44556778999999999999999999999999999985 3599999999999999999998753 89999999976
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCC--cccHHHHHHh-ccCCCc
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF--NISTDVIKQL-LPMGDI 243 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy--~iss~il~~L-l~~g~~ 243 (371)
-.+.+ .....+|.|+-++|- .....+...| .++|.+
T Consensus 104 ~g~~~---------~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i 142 (247)
T PF08704_consen 104 EGFDE---------ELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRI 142 (247)
T ss_dssp G--ST---------T-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEE
T ss_pred ccccc---------cccCcccEEEEeCCCHHHHHHHHHHHHhcCCceE
Confidence 43321 012579999999874 4445555566 455543
No 110
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.76 E-value=5.8e-08 Score=94.53 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=72.3
Q ss_pred CcccccCcccCCCHHHHHHHH-----HHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHH---Hhc
Q 017450 114 FPRKSLGQHYMLNSEINDQLA-----AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRE---RFA 184 (371)
Q Consensus 114 ~~~k~lGQ~fl~~~~v~~~i~-----~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~---~~~ 184 (371)
+++-.+.| +.++.++...+. ..+...++++|||||||+|+++..++..+. .|+|||.++.|+..++. ...
T Consensus 90 ~~~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~ 168 (314)
T TIGR00452 90 KGPFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD 168 (314)
T ss_pred CCCccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc
Confidence 45555667 777888765544 344566789999999999999999998875 69999999999875432 222
Q ss_pred cCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 185 SIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 185 ~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
..+++.+..+|+.+++. ...||.|+++-
T Consensus 169 ~~~~v~~~~~~ie~lp~-------------~~~FD~V~s~g 196 (314)
T TIGR00452 169 NDKRAILEPLGIEQLHE-------------LYAFDTVFSMG 196 (314)
T ss_pred cCCCeEEEECCHHHCCC-------------CCCcCEEEEcc
Confidence 23478888888877642 24699999763
No 111
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.76 E-value=5.6e-08 Score=97.30 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
..+.+++.+.+.++.+|||||||+|.++..+++. +++|+|+|+++++++.++++.... ++++..+|+.++
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l-------- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL-------- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc--------
Confidence 3556777888889999999999999999999986 789999999999999999988532 577888887553
Q ss_pred HHHhhccCCCeeEEEecCC
Q 017450 208 LFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlP 226 (371)
.+.||.|+++..
T Consensus 226 -------~~~fD~Ivs~~~ 237 (383)
T PRK11705 226 -------NGQFDRIVSVGM 237 (383)
T ss_pred -------CCCCCEEEEeCc
Confidence 256999998643
No 112
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.8e-08 Score=100.60 Aligned_cols=107 Identities=18% Similarity=0.149 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~ 204 (371)
+.++....+.++..+++++||.-||.|.+|..||+...+|+|+|+++++++.|++|.+.++ |++++.+|+.++....
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~- 357 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW- 357 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc-
Confidence 4445555566677788999999999999999999999999999999999999999998765 8999999999875431
Q ss_pred hhhHHHhhccCCCeeEEEecCCCcccH-HHHHHhccCCC
Q 017450 205 MLSLFERRKSSSGFAKVVANIPFNIST-DVIKQLLPMGD 242 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d~VVaNlPy~iss-~il~~Ll~~g~ 242 (371)
.....+|.||-+||..-.. +++..+...+.
T Consensus 358 --------~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 358 --------WEGYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred --------cccCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 1235689999999997665 77777665543
No 113
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=2.9e-08 Score=101.21 Aligned_cols=92 Identities=22% Similarity=0.326 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccch
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCH 200 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~ 200 (371)
.......+...+.+.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...+ +++++++|+.++.
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~ 314 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH 314 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 3344455666777888999999999999999999985 3689999999999999999987654 6899999998753
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
.. ....||.|+.|+|+.
T Consensus 315 ~~-----------~~~~fD~Vl~D~Pcs 331 (444)
T PRK14902 315 EK-----------FAEKFDKILVDAPCS 331 (444)
T ss_pred ch-----------hcccCCEEEEcCCCC
Confidence 11 125699999999975
No 114
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.75 E-value=6.2e-08 Score=92.20 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=64.5
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHh
Q 017450 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
+.+.++++|||||||+|..+..++.. + .+|+++|+++.+++.|+++.... ++++++.+|+.++++.
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~--------- 143 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVA--------- 143 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCC---------
Confidence 45668899999999999988877764 3 47999999999999999987654 4889999999876542
Q ss_pred hccCCCeeEEEecCCCc
Q 017450 212 RKSSSGFAKVVANIPFN 228 (371)
Q Consensus 212 ~~~~~~~d~VVaNlPy~ 228 (371)
.+.+|+|++|.-++
T Consensus 144 ---~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 144 ---DNSVDVIISNCVIN 157 (272)
T ss_pred ---CCceeEEEEcCccc
Confidence 35799999986543
No 115
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.74 E-value=4.2e-08 Score=93.36 Aligned_cols=86 Identities=13% Similarity=0.103 Sum_probs=70.7
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhh
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~ 206 (371)
.....+.+.++++|||+|||+|..|..+++. ...|+|+|+++.+++.++++++..+ +++++++|+..++.
T Consensus 62 ~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~----- 136 (264)
T TIGR00446 62 IPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA----- 136 (264)
T ss_pred HHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh-----
Confidence 3345667888999999999999999999885 3589999999999999999997654 78999999876532
Q ss_pred hHHHhhccCCCeeEEEecCCCcc
Q 017450 207 SLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
..+.||.|+.|+|..-
T Consensus 137 -------~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 137 -------AVPKFDAILLDAPCSG 152 (264)
T ss_pred -------hccCCCEEEEcCCCCC
Confidence 1245999999999763
No 116
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.74 E-value=6.3e-08 Score=96.34 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhH
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l 208 (371)
+...+....+..+||||||+|..+..+|.. ...++|||+++.+++.+.++.... +|+.++++|+..+...
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~------ 187 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL------ 187 (390)
T ss_pred HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh------
Confidence 444445556779999999999999999987 468999999999999998887654 4999999999764211
Q ss_pred HHhhccCCCeeEEEecCCCcc
Q 017450 209 FERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy~i 229 (371)
...+.+|.|+.|.|.-+
T Consensus 188 ----~~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 188 ----LPSNSVEKIFVHFPVPW 204 (390)
T ss_pred ----CCCCceeEEEEeCCCCc
Confidence 13467999999987543
No 117
>PRK08317 hypothetical protein; Provisional
Probab=98.74 E-value=1.1e-07 Score=87.57 Aligned_cols=87 Identities=24% Similarity=0.329 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~ 204 (371)
..+.+...+.+.++++|||+|||+|.++..+++. +.+++++|+++.+++.++++... ..+++++.+|+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-- 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFP-- 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCC--
Confidence 4456777788888999999999999999999986 35899999999999999988432 34789999998876532
Q ss_pred hhhHHHhhccCCCeeEEEecCCC
Q 017450 205 MLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
.+.+|.|+++..+
T Consensus 85 ----------~~~~D~v~~~~~~ 97 (241)
T PRK08317 85 ----------DGSFDAVRSDRVL 97 (241)
T ss_pred ----------CCCceEEEEechh
Confidence 3579999886544
No 118
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.74 E-value=5.7e-08 Score=96.54 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHH----hcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450 124 MLNSEINDQLAAA----AAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (371)
Q Consensus 124 l~~~~v~~~i~~~----l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~ 197 (371)
-+++.+.+.+++. +... +.+|||++||+|.++..++....+|+|||+++.+++.|++|...++ +++++.+|+.
T Consensus 186 Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~ 264 (362)
T PRK05031 186 QPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAE 264 (362)
T ss_pred ccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3455555555544 3322 3579999999999999999887899999999999999999986554 8999999997
Q ss_pred cchhhhhhhhH-HHhhc----cCCCeeEEEecCCCcc-cHHHHHHhcc
Q 017450 198 KCHIRSHMLSL-FERRK----SSSGFAKVVANIPFNI-STDVIKQLLP 239 (371)
Q Consensus 198 ~~~~~~~~~~l-~~~~~----~~~~~d~VVaNlPy~i-ss~il~~Ll~ 239 (371)
++- ....... .+... ....+|+||.+||+.- ...++..|..
T Consensus 265 ~~l-~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~ 311 (362)
T PRK05031 265 EFT-QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA 311 (362)
T ss_pred HHH-HHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 752 1100000 00000 0124899999999964 3456666654
No 119
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.74 E-value=3.8e-08 Score=90.75 Aligned_cols=87 Identities=26% Similarity=0.382 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh
Q 017450 128 EINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (371)
Q Consensus 128 ~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~ 202 (371)
.+...+++.+.. ..+.+|||||||+|.++..+++.+ .+++++|+++.++..++++.. ++++++.+|+.+.++
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~- 94 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLPL- 94 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCCC-
Confidence 344445444442 345799999999999999999875 478999999999999998875 378899999987653
Q ss_pred hhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
..+.+|+|+++...+
T Consensus 95 -----------~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 95 -----------EDSSFDLIVSNLALQ 109 (240)
T ss_pred -----------CCCceeEEEEhhhhh
Confidence 235799999986654
No 120
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.74 E-value=7e-08 Score=86.97 Aligned_cols=108 Identities=19% Similarity=0.385 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450 126 NSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (371)
Q Consensus 126 ~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~ 199 (371)
...+.+.+.+.+.. -.+.++||+-||+|.++...+.+|+ +|+.||.|+..+..+++|++..+ +++++.+|+...
T Consensus 25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~ 104 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF 104 (183)
T ss_dssp SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence 34455555655554 3788999999999999999999985 89999999999999999988654 589999998765
Q ss_pred hhhhhhhhHHHhhccCCCeeEEEecCCCccc---HHHHHHhccCC
Q 017450 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS---TDVIKQLLPMG 241 (371)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is---s~il~~Ll~~g 241 (371)
-... . .....||+|+.+|||... .+++..+...+
T Consensus 105 l~~~-----~---~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~ 141 (183)
T PF03602_consen 105 LLKL-----A---KKGEKFDIIFLDPPYAKGLYYEELLELLAENN 141 (183)
T ss_dssp HHHH-----H---HCTS-EEEEEE--STTSCHHHHHHHHHHHHTT
T ss_pred HHhh-----c---ccCCCceEEEECCCcccchHHHHHHHHHHHCC
Confidence 3211 0 134679999999999765 34555555443
No 121
>PLN02476 O-methyltransferase
Probab=98.74 E-value=5.9e-08 Score=92.66 Aligned_cols=98 Identities=11% Similarity=0.169 Sum_probs=79.1
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
..+++.....+...+...++++|||||+|+|++|.+++.. +.+|+++|.|++.++.|+++++..+ +++++.||+
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA 179 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA 179 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence 5778888888888888888999999999999999999974 4589999999999999999998664 799999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCC
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
.+.-.. +..+ ...+.||.|+-+.+
T Consensus 180 ~e~L~~-----l~~~-~~~~~FD~VFIDa~ 203 (278)
T PLN02476 180 AESLKS-----MIQN-GEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHH-----HHhc-ccCCCCCEEEECCC
Confidence 875211 1100 01357999997765
No 122
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.73 E-value=5.8e-08 Score=96.17 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~ 204 (371)
..+++.+.+.+...+ ++|||+|||+|.++..+++...+|+|||+++++++.|++|...++ +++++.+|+.++.....
T Consensus 184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 262 (353)
T TIGR02143 184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMN 262 (353)
T ss_pred HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHh
Confidence 344455555554333 479999999999999999887899999999999999999987654 79999999977532100
Q ss_pred hh-hH--HHhhc-cCCCeeEEEecCCCcc-cHHHHHHhcc
Q 017450 205 ML-SL--FERRK-SSSGFAKVVANIPFNI-STDVIKQLLP 239 (371)
Q Consensus 205 ~~-~l--~~~~~-~~~~~d~VVaNlPy~i-ss~il~~Ll~ 239 (371)
.. .+ ..... ....+|+|+.+||..- ...++..+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~ 302 (353)
T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA 302 (353)
T ss_pred hccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc
Confidence 00 00 00000 0113799999999865 3455566554
No 123
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=6.9e-08 Score=90.50 Aligned_cols=104 Identities=21% Similarity=0.307 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhc---CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEccccc
Q 017450 127 SEINDQLAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVK 198 (371)
Q Consensus 127 ~~v~~~i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~ 198 (371)
.++++.+++.+. ...+..+||+|||+|..+..++.. .+.|+|||.++.++..|.+|...+ +.+.+++-+...
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 355566665553 235668999999999999999875 468999999999999999998754 578888655433
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHhc
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll 238 (371)
--+..+. ...++.|.+|+|+||--..+ ..++.
T Consensus 211 d~~~~~~-------l~~~~~dllvsNPPYI~~dD-~~~l~ 242 (328)
T KOG2904|consen 211 DASDEHP-------LLEGKIDLLVSNPPYIRKDD-NRQLK 242 (328)
T ss_pred ccccccc-------cccCceeEEecCCCcccccc-hhhcC
Confidence 2111110 12378999999999866655 44443
No 124
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.71 E-value=4.9e-08 Score=104.90 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=73.0
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~ 197 (371)
+..|+...+..+..+. ++++|||+|||+|.++..++..|+ +|++||+|+.+++.+++|+..++ +++++++|+.
T Consensus 522 ~flDqr~~R~~~~~~~--~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~ 599 (702)
T PRK11783 522 LFLDHRPTRRMIGQMA--KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL 599 (702)
T ss_pred ECHHHHHHHHHHHHhc--CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence 3444444444444332 578999999999999999999876 69999999999999999997542 6899999997
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
++... ....||+||.|+||...
T Consensus 600 ~~l~~-----------~~~~fDlIilDPP~f~~ 621 (702)
T PRK11783 600 AWLKE-----------AREQFDLIFIDPPTFSN 621 (702)
T ss_pred HHHHH-----------cCCCcCEEEECCCCCCC
Confidence 74211 13579999999999764
No 125
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.70 E-value=9.5e-08 Score=93.89 Aligned_cols=88 Identities=15% Similarity=0.249 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450 127 SEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 127 ~~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~ 203 (371)
..+...+++.+.. .++.+|||||||+|.++..+++. +.+|+++|+++.|++.++++.. ..+++++.+|+.++++.
T Consensus 98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp~~- 175 (340)
T PLN02490 98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLPFP- 175 (340)
T ss_pred HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCCCC-
Confidence 4455556665554 35779999999999999998875 4689999999999999998864 34789999999887542
Q ss_pred hhhhHHHhhccCCCeeEEEecCCC
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
.+.||+|+++..+
T Consensus 176 -----------~~sFDvVIs~~~L 188 (340)
T PLN02490 176 -----------TDYADRYVSAGSI 188 (340)
T ss_pred -----------CCceeEEEEcChh
Confidence 3579999987554
No 126
>PRK06922 hypothetical protein; Provisional
Probab=98.70 E-value=8.5e-08 Score=100.40 Aligned_cols=82 Identities=11% Similarity=0.290 Sum_probs=64.9
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 137 AAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
+...++.+|||||||+|.++..+++. +.+|+|+|+++.|++.|+++.... .+++++++|+.+++.. .
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~----------f 483 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS----------F 483 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc----------c
Confidence 34446889999999999999988875 569999999999999999886543 3688899999876410 1
Q ss_pred cCCCeeEEEecCCCc
Q 017450 214 SSSGFAKVVANIPFN 228 (371)
Q Consensus 214 ~~~~~d~VVaNlPy~ 228 (371)
.++.+|+|++|.+++
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 246799999987654
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=6.2e-08 Score=98.42 Aligned_cols=95 Identities=14% Similarity=0.246 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~ 197 (371)
|.++......+...+.+.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...+ +++++++|+.
T Consensus 219 ~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~ 298 (431)
T PRK14903 219 ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE 298 (431)
T ss_pred EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh
Confidence 3334444555666778889999999999999999999986 4689999999999999999987654 6889999998
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
+++.. ..+.||.|+.|.|+.
T Consensus 299 ~l~~~-----------~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 299 RLTEY-----------VQDTFDRILVDAPCT 318 (431)
T ss_pred hhhhh-----------hhccCCEEEECCCCC
Confidence 75411 125699999999984
No 128
>PRK06202 hypothetical protein; Provisional
Probab=98.68 E-value=9.3e-08 Score=88.91 Aligned_cols=78 Identities=23% Similarity=0.213 Sum_probs=60.0
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHh
Q 017450 138 AVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 138 ~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
...++.+|||||||+|.++..|++. | .+|+|+|++++|++.|+++... .++++..+|+..++.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~---------- 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA---------- 125 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc----------
Confidence 3356789999999999999988753 3 4899999999999999988642 357777776655542
Q ss_pred hccCCCeeEEEecCCCc
Q 017450 212 RKSSSGFAKVVANIPFN 228 (371)
Q Consensus 212 ~~~~~~~d~VVaNlPy~ 228 (371)
....+|+|++|..++
T Consensus 126 --~~~~fD~V~~~~~lh 140 (232)
T PRK06202 126 --EGERFDVVTSNHFLH 140 (232)
T ss_pred --cCCCccEEEECCeee
Confidence 235799999987654
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=8.4e-08 Score=97.89 Aligned_cols=89 Identities=10% Similarity=0.181 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIR 202 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~ 202 (371)
......+..+.+.++++|||+|||+|..|..+++. +.+|+|+|+++.+++.+++++...+ +++++.+|+.++.
T Consensus 237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-- 314 (445)
T PRK14904 237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-- 314 (445)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--
Confidence 34445556677788899999999999999998874 3589999999999999999987654 7899999998753
Q ss_pred hhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
....||.|+.++|+.-
T Consensus 315 -----------~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 315 -----------PEEQPDAILLDAPCTG 330 (445)
T ss_pred -----------cCCCCCEEEEcCCCCC
Confidence 1256999999999744
No 130
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.68 E-value=7e-08 Score=94.45 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHH--hc-cCCCeEEEEcccccchhhhhhhh
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRER--FA-SIDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~--~~-~~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
.+...+....+++|||||||+|+++..++..+. .|+|||.++.++..++.. .. ...+++++.+|+.++++
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~------ 186 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA------ 186 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC------
Confidence 445566656789999999999999999999875 699999999998764432 22 23479999999987753
Q ss_pred HHHhhccCCCeeEEEec-CCCccc
Q 017450 208 LFERRKSSSGFAKVVAN-IPFNIS 230 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaN-lPy~is 230 (371)
...||.|+++ .-|++.
T Consensus 187 -------~~~FD~V~s~~vl~H~~ 203 (322)
T PRK15068 187 -------LKAFDTVFSMGVLYHRR 203 (322)
T ss_pred -------cCCcCEEEECChhhccC
Confidence 2569999975 334443
No 131
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.65 E-value=2.2e-07 Score=85.77 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccc
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKC 199 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~ 199 (371)
.......++..+...++.+|||||||+|.++..++..+ .+++++|+++.+++.+++++... ++++++.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 34556677777777778899999999999999999875 79999999999999999988652 4789999999876
Q ss_pred hhhhhhhhHHHhhccCCCeeEEEec
Q 017450 200 HIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
+. ..+.+|+|+.+
T Consensus 116 ~~------------~~~~~D~I~~~ 128 (239)
T PRK00216 116 PF------------PDNSFDAVTIA 128 (239)
T ss_pred CC------------CCCCccEEEEe
Confidence 43 23568988864
No 132
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.64 E-value=1.6e-07 Score=88.64 Aligned_cols=48 Identities=35% Similarity=0.466 Sum_probs=42.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI 186 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~ 186 (371)
..++++|||||||+|.++..++..+. +|+|+|+|+.+++.+++++..+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc
Confidence 34788999999999999998888776 5999999999999999998754
No 133
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.64 E-value=2.8e-07 Score=85.53 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~ 203 (371)
.++..+..+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+ +++++.+|+.++...
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 110 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE- 110 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-
Confidence 344445666666666678899999999999999999988899999999999999998876433 577777877665311
Q ss_pred hhhhHHHhhccCCCeeEEEecC
Q 017450 204 HMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNl 225 (371)
..+.+|+|+++.
T Consensus 111 ----------~~~~fD~Ii~~~ 122 (233)
T PRK05134 111 ----------HPGQFDVVTCME 122 (233)
T ss_pred ----------cCCCccEEEEhh
Confidence 235799998753
No 134
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.64 E-value=9.6e-08 Score=87.16 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=67.1
Q ss_pred CCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhccCC--
Q 017450 112 GRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASID-- 187 (371)
Q Consensus 112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~~~-- 187 (371)
+....-.+...|..+....++..-.-...++++|+|..||.|.++..+|. .++.|+|+|+++..++.++++.+.+.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE 151 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T
T ss_pred CEEEEEccceEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 33333334444444444444433333356899999999999999999998 56789999999999999999987653
Q ss_pred -CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 188 -QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 188 -~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
++.++++|+.++.. ...+|.|++|+|..
T Consensus 152 ~~i~~~~~D~~~~~~-------------~~~~drvim~lp~~ 180 (200)
T PF02475_consen 152 NRIEVINGDAREFLP-------------EGKFDRVIMNLPES 180 (200)
T ss_dssp TTEEEEES-GGG----------------TT-EEEEEE--TSS
T ss_pred CeEEEEcCCHHHhcC-------------ccccCEEEECChHH
Confidence 68999999988742 36799999999964
No 135
>PLN03075 nicotianamine synthase; Provisional
Probab=98.63 E-value=3.9e-07 Score=87.66 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHH--h--CCeEEEEeCCHHHHHHHHHHhcc-C---CCeEEEEcccccchhhhh
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLN--A--GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~--~--~~~V~aIE~d~~~i~~a~~~~~~-~---~~v~vi~gD~~~~~~~~~ 204 (371)
++......++++|+|||||.|.+|..+.. . +.+++++|+|+++++.|++.+.. . ++++++.+|+.+...
T Consensus 115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~--- 191 (296)
T PLN03075 115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE--- 191 (296)
T ss_pred HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---
Confidence 33334344789999999997766554443 2 45899999999999999999853 2 379999999988531
Q ss_pred hhhHHHhhccCCCeeEEEec
Q 017450 205 MLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d~VVaN 224 (371)
..+.||+|+..
T Consensus 192 ---------~l~~FDlVF~~ 202 (296)
T PLN03075 192 ---------SLKEYDVVFLA 202 (296)
T ss_pred ---------ccCCcCEEEEe
Confidence 12569999876
No 136
>PRK00811 spermidine synthase; Provisional
Probab=98.61 E-value=1.8e-07 Score=90.02 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=62.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhcc-------CCCeEEEEcccccchhhhhhhhHHH
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFAS-------IDQLKVLQEDFVKCHIRSHMLSLFE 210 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~-------~~~v~vi~gD~~~~~~~~~~~~l~~ 210 (371)
..+++||+||||+|.++..+++. + .+|++||+|+.+++.+++.+.. .++++++.+|+.++-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-------- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-------- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence 35679999999999999999987 3 5899999999999999998752 35899999999875311
Q ss_pred hhccCCCeeEEEecC
Q 017450 211 RRKSSSGFAKVVANI 225 (371)
Q Consensus 211 ~~~~~~~~d~VVaNl 225 (371)
..+.||+|++++
T Consensus 147 ---~~~~yDvIi~D~ 158 (283)
T PRK00811 147 ---TENSFDVIIVDS 158 (283)
T ss_pred ---CCCcccEEEECC
Confidence 236799999985
No 137
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.60 E-value=1.6e-07 Score=95.66 Aligned_cols=99 Identities=13% Similarity=0.229 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~ 197 (371)
|.+.......++..+.+.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...+ +++++++|+.
T Consensus 234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~ 313 (434)
T PRK14901 234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSR 313 (434)
T ss_pred EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChh
Confidence 3344445556666788889999999999999999999986 2589999999999999999987664 7899999998
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
++..... ...+.||.|+.|.|.+-
T Consensus 314 ~~~~~~~--------~~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 314 NLLELKP--------QWRGYFDRILLDAPCSG 337 (434)
T ss_pred hcccccc--------cccccCCEEEEeCCCCc
Confidence 7641100 01256999999999653
No 138
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.59 E-value=4.5e-07 Score=82.80 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~ 203 (371)
......++..+...++.+|||+|||+|..+..+++.. .+++++|+++.+++.+++++....+++++.+|+.+.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-- 102 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF-- 102 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--
Confidence 3455666777766688999999999999999999874 38999999999999999987633478999999988653
Q ss_pred hhhhHHHhhccCCCeeEEEecCC
Q 017450 204 HMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
..+.+|.|+++..
T Consensus 103 ----------~~~~~D~i~~~~~ 115 (223)
T TIGR01934 103 ----------EDNSFDAVTIAFG 115 (223)
T ss_pred ----------CCCcEEEEEEeee
Confidence 2356999987643
No 139
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.59 E-value=2.6e-07 Score=85.29 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=54.1
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--------------cCCCeEEEEccccc
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--------------~~~~v~vi~gD~~~ 198 (371)
.+..+...++.+|||+|||.|.-+.+||++|.+|+|||+++.+++.+..... ...+++++.+|+.+
T Consensus 26 ~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 105 (213)
T TIGR03840 26 HWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA 105 (213)
T ss_pred HHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC
Confidence 3343433466799999999999999999999999999999999998644211 12368999999998
Q ss_pred chh
Q 017450 199 CHI 201 (371)
Q Consensus 199 ~~~ 201 (371)
++.
T Consensus 106 ~~~ 108 (213)
T TIGR03840 106 LTA 108 (213)
T ss_pred CCc
Confidence 753
No 140
>PRK04457 spermidine synthase; Provisional
Probab=98.58 E-value=3.8e-07 Score=86.78 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
..++++|||||||+|.++..+++. +.+|++||+|+.+++.|++++.. .++++++.+|+.++-..
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~----------- 132 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV----------- 132 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-----------
Confidence 345689999999999999999886 56899999999999999999863 25899999999775211
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+.+|+|+.|.
T Consensus 133 ~~~~yD~I~~D~ 144 (262)
T PRK04457 133 HRHSTDVILVDG 144 (262)
T ss_pred CCCCCCEEEEeC
Confidence 235689998763
No 141
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.56 E-value=1.4e-07 Score=83.15 Aligned_cols=79 Identities=22% Similarity=0.211 Sum_probs=57.9
Q ss_pred CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
+.|+|+.||.|.-|..+|+...+|+|||+|+..++.|+.|.+-++ ++++++||+.++.... .....+|
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~---------~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRL---------KSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------------S
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhc---------ccccccc
Confidence 479999999999999999999999999999999999999998775 8999999999863221 0111279
Q ss_pred EEEecCCCccc
Q 017450 220 KVVANIPFNIS 230 (371)
Q Consensus 220 ~VVaNlPy~is 230 (371)
.|+.+||+.-.
T Consensus 72 ~vFlSPPWGGp 82 (163)
T PF09445_consen 72 VVFLSPPWGGP 82 (163)
T ss_dssp EEEE---BSSG
T ss_pred EEEECCCCCCc
Confidence 99999999654
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.56 E-value=2.6e-07 Score=83.57 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=59.2
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc-chhhhhhhhHH
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-CHIRSHMLSLF 209 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~-~~~~~~~~~l~ 209 (371)
.+.+.+. ++++|||||||+|.++..+++. +..++|+|+++.+++.++++ +++++.+|+.+ ++.
T Consensus 6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~-------- 70 (194)
T TIGR02081 6 SILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEA-------- 70 (194)
T ss_pred HHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccc--------
Confidence 3444433 6779999999999999999875 56899999999999988653 57888999865 211
Q ss_pred HhhccCCCeeEEEecCCC
Q 017450 210 ERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlPy 227 (371)
.....+|.|++|.++
T Consensus 71 ---~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 71 ---FPDKSFDYVILSQTL 85 (194)
T ss_pred ---cCCCCcCEEEEhhHh
Confidence 123579999988664
No 143
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.55 E-value=2.5e-07 Score=87.13 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
..+.+.....+...+...+.++|||||+++|++|.+|+.. +.+|+++|.+++.++.|++++...+ +++++.||+
T Consensus 61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a 140 (247)
T PLN02589 61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140 (247)
T ss_pred CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence 3456777777777777778899999999999999999974 5699999999999999999998654 899999999
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEec
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
.+.-.. +...-...+.||.|+-+
T Consensus 141 ~e~L~~-----l~~~~~~~~~fD~iFiD 163 (247)
T PLN02589 141 LPVLDQ-----MIEDGKYHGTFDFIFVD 163 (247)
T ss_pred HHHHHH-----HHhccccCCcccEEEec
Confidence 885321 11000012579999854
No 144
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.55 E-value=4.9e-07 Score=83.14 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=55.3
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
..++.+|||||||+|..+..+++.. .+|+|||+++ | ...++++++++|+.+....+. +.+. ...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~---i~~~-~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKA---LLER-VGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHH---HHHH-hCC
Confidence 3578899999999999999999873 5899999998 2 123479999999988642111 1010 124
Q ss_pred CCeeEEEecC-CC
Q 017450 216 SGFAKVVANI-PF 227 (371)
Q Consensus 216 ~~~d~VVaNl-Py 227 (371)
+.+|+|++|+ |+
T Consensus 116 ~~~D~V~S~~~~~ 128 (209)
T PRK11188 116 SKVQVVMSDMAPN 128 (209)
T ss_pred CCCCEEecCCCCc
Confidence 6799999997 44
No 145
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.2e-07 Score=80.53 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=64.0
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
....+||||||+|..+..|++. + ....+.|+++.+++..++....++ ++++++.|....- ..+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-------------~~~ 109 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-------------RNE 109 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-------------ccC
Confidence 3679999999999999999886 3 468899999999998888776554 7788888887642 236
Q ss_pred CeeEEEecCCCcccH
Q 017450 217 GFAKVVANIPFNIST 231 (371)
Q Consensus 217 ~~d~VVaNlPy~iss 231 (371)
+.|+++-|+||-.++
T Consensus 110 ~VDvLvfNPPYVpt~ 124 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTS 124 (209)
T ss_pred CccEEEECCCcCcCC
Confidence 799999999997765
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.54 E-value=3.4e-07 Score=98.42 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=77.8
Q ss_pred cCCCHHHHHHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHh---------------------------------------
Q 017450 123 YMLNSEINDQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNA--------------------------------------- 162 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~--------------------------------------- 162 (371)
-.+.+.+++.|+..... .++..++|.+||+|.+.+..+..
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34678899999998887 66889999999999998776542
Q ss_pred -----CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 163 -----GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 163 -----~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
..+++|+|+|+.+++.|+.|+...+ .+++.++|+.++.... ..+.+|.||+||||..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----------~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----------PKGPTGLVISNPPYGE 315 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----------ccCCCCEEEECCCCcC
Confidence 1269999999999999999998654 5899999998875321 1246899999999953
No 147
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.53 E-value=5.1e-07 Score=83.03 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccccc
Q 017450 125 LNSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVK 198 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~ 198 (371)
.++..+..+...+.. ..+.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++...+ ++++..+|+.+
T Consensus 25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 104 (224)
T TIGR01983 25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVED 104 (224)
T ss_pred hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 344555666666552 347899999999999999999888899999999999999999876543 58888888877
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEec
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVAN 224 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaN 224 (371)
.... ..+.+|+|+++
T Consensus 105 ~~~~-----------~~~~~D~i~~~ 119 (224)
T TIGR01983 105 LAEK-----------GAKSFDVVTCM 119 (224)
T ss_pred hhcC-----------CCCCccEEEeh
Confidence 6431 12578998875
No 148
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.53 E-value=3.7e-07 Score=92.70 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEE--EEccccc
Q 017450 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKV--LQEDFVK 198 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~v--i~gD~~~ 198 (371)
.+.......++..+.+.++++|||+|||+|..|..+++. +++|+|+|+++.+++.++++++..+ .+++ ..+|...
T Consensus 221 ~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~ 300 (426)
T TIGR00563 221 TVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRG 300 (426)
T ss_pred EEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 333445666777788889999999999999999999986 3699999999999999999997654 3333 6677654
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
.... .....||.|+.+.|+.-
T Consensus 301 ~~~~----------~~~~~fD~VllDaPcSg 321 (426)
T TIGR00563 301 PSQW----------AENEQFDRILLDAPCSA 321 (426)
T ss_pred cccc----------ccccccCEEEEcCCCCC
Confidence 3210 02356999999999754
No 149
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=3.6e-07 Score=90.09 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=79.9
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC--------------------------------------
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-------------------------------------- 164 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-------------------------------------- 164 (371)
-.+.+.++..|+.+++..++..++|.=||+|.+.+..|..+.
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 456788999999999999999999999999999988877653
Q ss_pred ---eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 165 ---TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 165 ---~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
.++|+|+|+++++.|+.|....+ -|++.++|+.++... ...+++||+||||.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------------~~~~gvvI~NPPYG 310 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------------LEEYGVVISNPPYG 310 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------------CCcCCEEEeCCCcc
Confidence 37799999999999999988764 689999999887421 15689999999996
No 150
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.52 E-value=6e-07 Score=83.10 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=53.5
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--------------cCCCeEEEEccccc
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--------------SIDQLKVLQEDFVK 198 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--------------~~~~v~vi~gD~~~ 198 (371)
.+..+...++.+|||+|||.|.-+.+||++|.+|+|||+++..++.+..... ...++++.++|+.+
T Consensus 29 ~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 29 YWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred HHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 3333344466799999999999999999999999999999999997643211 12368899999998
Q ss_pred ch
Q 017450 199 CH 200 (371)
Q Consensus 199 ~~ 200 (371)
++
T Consensus 109 l~ 110 (218)
T PRK13255 109 LT 110 (218)
T ss_pred CC
Confidence 75
No 151
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.52 E-value=2.6e-07 Score=91.48 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~ 204 (371)
..+++.++++++..++ .|||+-||+|.+|..||..+.+|+|||+++.+++.|++|...++ |++++.+++.++...-.
T Consensus 183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALA 261 (352)
T ss_dssp HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHC
T ss_pred HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHH
Confidence 4445555566666555 89999999999999999999999999999999999999998664 89999988866432100
Q ss_pred hh-hH--HHhh-ccCCCeeEEEecCCCcccHH
Q 017450 205 ML-SL--FERR-KSSSGFAKVVANIPFNISTD 232 (371)
Q Consensus 205 ~~-~l--~~~~-~~~~~~d~VVaNlPy~iss~ 232 (371)
.. ++ ...+ .....+|.|+.+||.....+
T Consensus 262 ~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~ 293 (352)
T PF05958_consen 262 KAREFNRLKGIDLKSFKFDAVILDPPRAGLDE 293 (352)
T ss_dssp CS-GGTTGGGS-GGCTTESEEEE---TT-SCH
T ss_pred hhHHHHhhhhhhhhhcCCCEEEEcCCCCCchH
Confidence 00 00 0000 01235899999999866554
No 152
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.48 E-value=5.9e-07 Score=86.63 Aligned_cols=91 Identities=13% Similarity=0.306 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~ 203 (371)
|-+++.+++.+.+.++..+||.+||.|..|..+++.. .+|+|+|+|+.+++.+++++...++++++++|+.++...
T Consensus 5 pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~- 83 (296)
T PRK00050 5 PVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV- 83 (296)
T ss_pred cccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence 4567888888888889999999999999999999873 689999999999999999886545899999999987421
Q ss_pred hhhhHHHhhccCCCeeEEEecC
Q 017450 204 HMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNl 225 (371)
.. .....+|.|+.++
T Consensus 84 -----l~--~~~~~vDgIl~DL 98 (296)
T PRK00050 84 -----LA--EGLGKVDGILLDL 98 (296)
T ss_pred -----HH--cCCCccCEEEECC
Confidence 11 0112688888776
No 153
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.48 E-value=3.8e-07 Score=83.17 Aligned_cols=86 Identities=19% Similarity=0.316 Sum_probs=66.7
Q ss_pred cCCCHHHHHHHHHHhcCCC--CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc-c
Q 017450 123 YMLNSEINDQLAAAAAVQE--GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK-C 199 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~-~ 199 (371)
..+..++..+-++++.... +.-|||||||+|..+..|.+.|..++|+|+++.|++.|.+..-. -.++.+|+-+ +
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~Gl 106 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGL 106 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCC
Confidence 4566788888888887765 67899999999999999999999999999999999999874211 2366666643 2
Q ss_pred hhhhhhhhHHHhhccCCCeeEEEe
Q 017450 200 HIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
++ .++.||.+|+
T Consensus 107 pf------------rpGtFDg~IS 118 (270)
T KOG1541|consen 107 PF------------RPGTFDGVIS 118 (270)
T ss_pred CC------------CCCccceEEE
Confidence 22 4578998774
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.2e-06 Score=78.58 Aligned_cols=93 Identities=26% Similarity=0.436 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450 127 SEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (371)
Q Consensus 127 ~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~ 200 (371)
..+.+.+.+.+.. ..|.++||+-+|+|.++...+.+|+ +++.||.|...+..+++|.+.. ++.+++.+|+...-
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 3455666666654 5788999999999999999999975 8999999999999999998754 37899999998431
Q ss_pred hhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 201 IRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
... ...+.||+|+.+|||+
T Consensus 107 -~~~--------~~~~~FDlVflDPPy~ 125 (187)
T COG0742 107 -KQL--------GTREPFDLVFLDPPYA 125 (187)
T ss_pred -Hhc--------CCCCcccEEEeCCCCc
Confidence 110 1223599999999997
No 155
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.46 E-value=5.2e-07 Score=83.13 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=57.1
Q ss_pred CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++|||||||+|.++..+++. +.+|+|+|+++.+++.+++++... ++++++.+|+.+.++ .+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------------~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------------PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------------CCC
Confidence 47999999999999999986 468999999999999999988653 378999999866532 246
Q ss_pred eeEEEec
Q 017450 218 FAKVVAN 224 (371)
Q Consensus 218 ~d~VVaN 224 (371)
||+|+++
T Consensus 68 fD~I~~~ 74 (224)
T smart00828 68 YDLVFGF 74 (224)
T ss_pred CCEeehH
Confidence 8999864
No 156
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.46 E-value=1.9e-07 Score=85.79 Aligned_cols=117 Identities=23% Similarity=0.282 Sum_probs=86.4
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC----CCeEEEEcccccchhhhhhhhH
Q 017450 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI----DQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~----~~v~vi~gD~~~~~~~~~~~~l 208 (371)
++...++.|++|||...|.|+.++..+++|+ +|++||.|+..++.|+-|--.. .+++++.||+.++-..
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------ 200 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------ 200 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc------
Confidence 3455667899999999999999999999998 9999999999999988763211 2789999999875321
Q ss_pred HHhhccCCCeeEEEecCCC-cccHH---------HHHHhccCCCchh--------HHHHHhhhhHHhhhc
Q 017450 209 FERRKSSSGFAKVVANIPF-NISTD---------VIKQLLPMGDIFS--------EVVLLLQEETALRLV 260 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy-~iss~---------il~~Ll~~g~~~~--------~~~lmvQke~a~rl~ 260 (371)
..+..||.|+.++|- +.+.+ +.+-|.++|.+|. .--.-+|+++++||-
T Consensus 201 ----~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr 266 (287)
T COG2521 201 ----FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLR 266 (287)
T ss_pred ----CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHH
Confidence 245679999999994 55443 3344455665542 223456888888886
No 157
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.43 E-value=1.1e-06 Score=79.24 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=54.4
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 137 AAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
..+.++++|||||||+|.++..++... .+|+++|+++.+ ..++++++++|+.+.+..+..... .
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~----~ 94 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRER----V 94 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHH----h
Confidence 345688999999999999999998762 479999999865 124788999998765421111000 1
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+.+|+|++|.
T Consensus 95 ~~~~~D~V~~~~ 106 (188)
T TIGR00438 95 GDDKVDVVMSDA 106 (188)
T ss_pred CCCCccEEEcCC
Confidence 235699999874
No 158
>PRK01581 speE spermidine synthase; Validated
Probab=98.43 E-value=1.9e-06 Score=84.96 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHh--c-------cCCCeEEEEcccccchhhhhhhh
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERF--A-------SIDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~--~-------~~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
...+++||+||||+|..+..+++.. .+|++||+|+++++.|++.. . ..++++++.+|+.++-..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS----- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-----
Confidence 3466799999999999999888864 68999999999999999731 1 235899999999875321
Q ss_pred HHHhhccCCCeeEEEecCCC
Q 017450 208 LFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy 227 (371)
..+.||+|+.++|-
T Consensus 223 ------~~~~YDVIIvDl~D 236 (374)
T PRK01581 223 ------PSSLYDVIIIDFPD 236 (374)
T ss_pred ------cCCCccEEEEcCCC
Confidence 23579999999864
No 159
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1e-06 Score=79.85 Aligned_cols=111 Identities=18% Similarity=0.293 Sum_probs=88.2
Q ss_pred cccCCCHHHHHHHHHHhc--CCCCCEEEEEcCcccHHHHHHHHh----CCeEEEEeCCHHHHHHHHHHhccC--------
Q 017450 121 QHYMLNSEINDQLAAAAA--VQEGDIVLEIGPGTGSLTNVLLNA----GATVLAIEKDQHMVGLVRERFASI-------- 186 (371)
Q Consensus 121 Q~fl~~~~v~~~i~~~l~--~~~~~~VLEIG~G~G~lt~~La~~----~~~V~aIE~d~~~i~~a~~~~~~~-------- 186 (371)
..-+.-+.+-+.+++.+. +++|-+.||+|+|+|+||..++.. |..++|||.-+++++.+++++...
T Consensus 60 n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~ 139 (237)
T KOG1661|consen 60 NLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSS 139 (237)
T ss_pred ceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhh
Confidence 445677899999999998 889999999999999999998864 345699999999999999987532
Q ss_pred ----CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE-ecCCCcccHHHHHHhccCCCc
Q 017450 187 ----DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV-ANIPFNISTDVIKQLLPMGDI 243 (371)
Q Consensus 187 ----~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV-aNlPy~iss~il~~Ll~~g~~ 243 (371)
+++.++.||...... +..+||.|. +.-.-.+..+++.+|.++|.+
T Consensus 140 ~~~~~~l~ivvGDgr~g~~------------e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrl 189 (237)
T KOG1661|consen 140 KLKRGELSIVVGDGRKGYA------------EQAPYDAIHVGAAASELPQELLDQLKPGGRL 189 (237)
T ss_pred hhccCceEEEeCCccccCC------------ccCCcceEEEccCccccHHHHHHhhccCCeE
Confidence 378899999988743 235688774 433335667888899888876
No 160
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.43 E-value=1.7e-06 Score=74.68 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=54.1
Q ss_pred HHHHHHhc-CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHH
Q 017450 131 DQLAAAAA-VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 131 ~~i~~~l~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~ 209 (371)
+.+..... ..++.+|||||||+|.++..|++.+.+++++|+++.+++. .++.....+......
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~~-------- 74 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQDPPF-------- 74 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHTHHC--------
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhhhhc--------
Confidence 33444443 4678899999999999999999889999999999999988 123333333332221
Q ss_pred HhhccCCCeeEEEecCC
Q 017450 210 ERRKSSSGFAKVVANIP 226 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlP 226 (371)
..+.+|.|+++--
T Consensus 75 ----~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 75 ----PDGSFDLIICNDV 87 (161)
T ss_dssp ----HSSSEEEEEEESS
T ss_pred ----cccchhhHhhHHH
Confidence 2468999998743
No 161
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.42 E-value=3e-08 Score=79.52 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=46.6
Q ss_pred EEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEE
Q 017450 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV 221 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~V 221 (371)
||||||+|.++..+++. ..+++++|+++.|++.+++++.... +...+..+..+.... .....||.|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY----------DPPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C----------CC----SEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc----------cccccccee
Confidence 79999999999999998 6799999999999998888887654 334444444333211 112479999
Q ss_pred EecCCCc
Q 017450 222 VANIPFN 228 (371)
Q Consensus 222 VaNlPy~ 228 (371)
+++-..+
T Consensus 71 ~~~~vl~ 77 (99)
T PF08242_consen 71 VASNVLH 77 (99)
T ss_dssp EEE-TTS
T ss_pred hhhhhHh
Confidence 9865443
No 162
>PLN02366 spermidine synthase
Probab=98.42 E-value=1.5e-06 Score=84.60 Aligned_cols=77 Identities=13% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
..+++||+||||.|.++..+++.. .+|+.||+|+.+++.+++.+.. .++++++.+|+.++-..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--------- 160 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--------- 160 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---------
Confidence 467899999999999999999873 5899999999999999998753 25899999998765211
Q ss_pred hccCCCeeEEEecCC
Q 017450 212 RKSSSGFAKVVANIP 226 (371)
Q Consensus 212 ~~~~~~~d~VVaNlP 226 (371)
...+.||+|+.+.+
T Consensus 161 -~~~~~yDvIi~D~~ 174 (308)
T PLN02366 161 -APEGTYDAIIVDSS 174 (308)
T ss_pred -ccCCCCCEEEEcCC
Confidence 11357999998764
No 163
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.41 E-value=1.3e-06 Score=68.08 Aligned_cols=75 Identities=27% Similarity=0.428 Sum_probs=59.6
Q ss_pred EEEEEcCcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450 144 IVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~ 220 (371)
+|+|+|||.|.++..++. .+.+++++|.++..+..+++.... ..+++++.+|+.+.... ..+.+|+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-----------ADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-----------cCCceEE
Confidence 489999999999999998 467999999999999988843322 24789999998876420 2357999
Q ss_pred EEecCCCcc
Q 017450 221 VVANIPFNI 229 (371)
Q Consensus 221 VVaNlPy~i 229 (371)
|+.|.+++.
T Consensus 70 i~~~~~~~~ 78 (107)
T cd02440 70 IISDPPLHH 78 (107)
T ss_pred EEEccceee
Confidence 999998765
No 164
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.40 E-value=2.5e-06 Score=82.71 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~ 200 (371)
+...+++.+...++.+|||||||+|.++..++++ +.+++++|. +.+++.++++.... ++++++.+|+.+.+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 4566777777788899999999999999999987 468999998 78999999887754 37899999998643
No 165
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=1.1e-06 Score=91.50 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHH--hc-------cCCCeEEEEcccccchhhhhhhhH
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER--FA-------SIDQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~--~~-------~~~~v~vi~gD~~~~~~~~~~~~l 208 (371)
.++++|||||||+|..+..++++. .+|++||+|+++++.++++ +. +.++++++.+|+.+.-..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------ 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------ 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh------
Confidence 467899999999999999999874 5999999999999999984 22 125899999999874211
Q ss_pred HHhhccCCCeeEEEecCCCc
Q 017450 209 FERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy~ 228 (371)
..++||+|++|+|..
T Consensus 370 -----~~~~fDvIi~D~~~~ 384 (521)
T PRK03612 370 -----LAEKFDVIIVDLPDP 384 (521)
T ss_pred -----CCCCCCEEEEeCCCC
Confidence 235799999998753
No 166
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.38 E-value=2e-06 Score=82.04 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHh
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
..+++|||||||+|.++..+++.. .+++++|+|+.+++.+++.+.. .++++++.+|+.+.-..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~--------- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD--------- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh---------
Confidence 356699999999999999988864 5899999999999999998743 24788999998764211
Q ss_pred hccCCCeeEEEecCCC
Q 017450 212 RKSSSGFAKVVANIPF 227 (371)
Q Consensus 212 ~~~~~~~d~VVaNlPy 227 (371)
....||+||.+.+.
T Consensus 142 --~~~~yDvIi~D~~~ 155 (270)
T TIGR00417 142 --TENTFDVIIVDSTD 155 (270)
T ss_pred --CCCCccEEEEeCCC
Confidence 23579999998764
No 167
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.37 E-value=3.3e-06 Score=78.72 Aligned_cols=82 Identities=21% Similarity=0.350 Sum_probs=66.6
Q ss_pred ccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--C------CeEEEEeCCHHHHHHHHHHhccC---
Q 017450 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--G------ATVLAIEKDQHMVGLVRERFASI--- 186 (371)
Q Consensus 118 ~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~------~~V~aIE~d~~~i~~a~~~~~~~--- 186 (371)
.+|+|-++ -+..+..+.+..+.++||++||||.+|..+.+. . .+|+.+|++++|+..++++....
T Consensus 81 SlGiHRlW----Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~ 156 (296)
T KOG1540|consen 81 SLGIHRLW----KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK 156 (296)
T ss_pred hcchhHHH----HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC
Confidence 45665443 345677788888999999999999999999885 2 58999999999999999987432
Q ss_pred --CCeEEEEcccccchhhh
Q 017450 187 --DQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 187 --~~v~vi~gD~~~~~~~~ 203 (371)
+.+.++.+|++++++++
T Consensus 157 ~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 157 ASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred cCCceEEEeCCcccCCCCC
Confidence 25899999999998753
No 168
>PTZ00146 fibrillarin; Provisional
Probab=98.36 E-value=2.5e-06 Score=81.86 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=60.5
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch-hhhhhhhHHHh
Q 017450 136 AAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH-IRSHMLSLFER 211 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~-~~~~~~~l~~~ 211 (371)
.+.+.++++|||+|||+|+.|..+++.. ..|+|||+++++.+.+.+......|+..+.+|+..-. +.
T Consensus 127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~--------- 197 (293)
T PTZ00146 127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYR--------- 197 (293)
T ss_pred eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhh---------
Confidence 3456789999999999999999999972 5899999999876555554433368999999986421 11
Q ss_pred hccCCCeeEEEecCC
Q 017450 212 RKSSSGFAKVVANIP 226 (371)
Q Consensus 212 ~~~~~~~d~VVaNlP 226 (371)
...+.+|+|+++..
T Consensus 198 -~~~~~vDvV~~Dva 211 (293)
T PTZ00146 198 -MLVPMVDVIFADVA 211 (293)
T ss_pred -cccCCCCEEEEeCC
Confidence 01246899998875
No 169
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.34 E-value=4.1e-06 Score=81.24 Aligned_cols=68 Identities=25% Similarity=0.372 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhcc-CC--CeEEEEcccccc
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFAS-ID--QLKVLQEDFVKC 199 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~-~~--~v~vi~gD~~~~ 199 (371)
.+.|++.+. ++.+|||+|||+|..|..|++. +.+|++||++++|++.+++++.. .+ ++..+++|+.+.
T Consensus 54 ~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 54 ADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 344554443 5679999999999999999987 47899999999999999988754 23 456789999763
No 170
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.33 E-value=3.3e-06 Score=84.47 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred ccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450 122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~ 196 (371)
|.-.+..+...+++.+... ++.+|||++||+|.++..++.. + .+|+++|+|+.+++.+++|++.++ +++++++|+
T Consensus 37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da 116 (382)
T PRK04338 37 RMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA 116 (382)
T ss_pred cccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH
Confidence 3344556666666665433 3468999999999999999876 3 389999999999999999987543 677899998
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHH
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQ 236 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~ 236 (371)
.++.. ....||+|+.|+| ....+.+..
T Consensus 117 ~~~l~------------~~~~fD~V~lDP~-Gs~~~~l~~ 143 (382)
T PRK04338 117 NALLH------------EERKFDVVDIDPF-GSPAPFLDS 143 (382)
T ss_pred HHHHh------------hcCCCCEEEECCC-CCcHHHHHH
Confidence 66421 1246999999975 555566544
No 171
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=1.8e-06 Score=84.58 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCC---CeEEEEcccc
Q 017450 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASID---QLKVLQEDFV 197 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~ 197 (371)
.|..+....++..-+-....|++|||.-+|.|.+|..+|..|.. |+|+|+|+..++.+++|+.-++ .+..++||+.
T Consensus 169 v~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~r 248 (341)
T COG2520 169 VYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAR 248 (341)
T ss_pred eEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHH
Confidence 34444444444333333446999999999999999999999875 9999999999999999998654 4889999999
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
++... .+.+|.|++|+|..
T Consensus 249 ev~~~------------~~~aDrIim~~p~~ 267 (341)
T COG2520 249 EVAPE------------LGVADRIIMGLPKS 267 (341)
T ss_pred Hhhhc------------cccCCEEEeCCCCc
Confidence 87532 26689999999973
No 172
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.25 E-value=4.1e-06 Score=79.76 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCcccH----HHHHHHHh-------CCeEEEEeCCHHHHHHHHHHhcc-----------------------
Q 017450 140 QEGDIVLEIGPGTGS----LTNVLLNA-------GATVLAIEKDQHMVGLVRERFAS----------------------- 185 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~----lt~~La~~-------~~~V~aIE~d~~~i~~a~~~~~~----------------------- 185 (371)
.++.+|||+|||+|. ++..+++. +.+|+|+|+|+.|++.|++..-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345699999999996 55555553 25899999999999999985310
Q ss_pred ------CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 186 ------IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 186 ------~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
..++++.++|+.+.++ ..+.+|+|++
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~------------~~~~fD~I~c 209 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP------------PLGDFDLIFC 209 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC------------ccCCCCEEEe
Confidence 0257888888887543 1357999987
No 173
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.23 E-value=4.1e-06 Score=81.41 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=60.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+..++.|||+|||+|.|+...|+.|+ +|+|||.+.-+ ..|.+.+..++ -++++.|.+.++.++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP------------ 124 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP------------ 124 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC------------
Confidence 45789999999999999999999986 79999987655 88888877654 589999999998542
Q ss_pred CCCeeEEEec
Q 017450 215 SSGFAKVVAN 224 (371)
Q Consensus 215 ~~~~d~VVaN 224 (371)
.++.|+||+-
T Consensus 125 ~eKVDiIvSE 134 (346)
T KOG1499|consen 125 VEKVDIIVSE 134 (346)
T ss_pred ccceeEEeeh
Confidence 3678999974
No 174
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.22 E-value=1.7e-06 Score=77.14 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=54.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc--cCCCeEEEEcccccchh
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA--SIDQLKVLQEDFVKCHI 201 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~--~~~~v~vi~gD~~~~~~ 201 (371)
..+.+.|+|+|+|.|+...++.+.+|+|||.|+...+.|.+|+. ...|++++.||+.+.++
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 34799999999999999988888899999999999999999964 33499999999999876
No 175
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.22 E-value=3.2e-07 Score=84.10 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~ 206 (371)
|..++.++..+...+-+++||+|||||-.+..|-....+++|||+|+.|++.|.++-- + =++.++|+..+...
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~-Y--D~L~~Aea~~Fl~~---- 183 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL-Y--DTLYVAEAVLFLED---- 183 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc-h--HHHHHHHHHHHhhh----
Confidence 5566777777777667899999999999999999998999999999999999987621 1 13445555443210
Q ss_pred hHHHhhccCCCeeEEEec--CCC
Q 017450 207 SLFERRKSSSGFAKVVAN--IPF 227 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaN--lPy 227 (371)
....++|.|++. +||
T Consensus 184 ------~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 184 ------LTQERFDLIVAADVLPY 200 (287)
T ss_pred ------ccCCcccchhhhhHHHh
Confidence 134678988853 454
No 176
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.21 E-value=7.1e-06 Score=76.44 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=38.5
Q ss_pred HHHHHHhcC-CCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHH
Q 017450 131 DQLAAAAAV-QEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGL 178 (371)
Q Consensus 131 ~~i~~~l~~-~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~ 178 (371)
..++....+ .++.+|||+|||+|.+|..+++.|+ +|+|||+++.|+..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 344444443 3677999999999999999999964 89999999977765
No 177
>PRK10742 putative methyltransferase; Provisional
Probab=98.20 E-value=7.3e-06 Score=76.76 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCC--EEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-----------CCeEEEEcccc
Q 017450 131 DQLAAAAAVQEGD--IVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI-----------DQLKVLQEDFV 197 (371)
Q Consensus 131 ~~i~~~l~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-----------~~v~vi~gD~~ 197 (371)
+.|+..++++++. +|||.-+|+|..+..++..|++|++||.++.....+++++... .+++++++|+.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4677888888888 9999999999999999999999999999999999998887652 35889999988
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
++--. ....||+|+.+|||-.
T Consensus 156 ~~L~~-----------~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 156 TALTD-----------ITPRPQVVYLDPMFPH 176 (250)
T ss_pred HHHhh-----------CCCCCcEEEECCCCCC
Confidence 76321 1246999999999954
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.19 E-value=6.8e-06 Score=76.12 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--------------CCCeEE
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------------IDQLKV 191 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--------------~~~v~v 191 (371)
++.+.+.+ ..+...++.+||..|||.|.-..+|+++|.+|+|+|+++..++.+.+.... .++|++
T Consensus 23 ~p~L~~~~-~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~ 101 (218)
T PF05724_consen 23 NPALVEYL-DSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI 101 (218)
T ss_dssp THHHHHHH-HHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred CHHHHHHH-HhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence 34444443 335666778999999999999999999999999999999999998433210 136899
Q ss_pred EEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (371)
Q Consensus 192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV 222 (371)
++||+.+++... .+.||.|+
T Consensus 102 ~~gDfF~l~~~~-----------~g~fD~iy 121 (218)
T PF05724_consen 102 YCGDFFELPPED-----------VGKFDLIY 121 (218)
T ss_dssp EES-TTTGGGSC-----------HHSEEEEE
T ss_pred EEcccccCChhh-----------cCCceEEE
Confidence 999999976431 24688887
No 179
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.18 E-value=1.4e-05 Score=74.24 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHh--------------ccCCCeE
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERF--------------ASIDQLK 190 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~--------------~~~~~v~ 190 (371)
.++.+.+.+-. +...++.+||.+|||.|.-..+|+++|.+|+|+|+++..++.+.+.. ....+++
T Consensus 28 pnp~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 28 PNEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 44555555433 44446689999999999999999999999999999999999876531 0123789
Q ss_pred EEEcccccchh
Q 017450 191 VLQEDFVKCHI 201 (371)
Q Consensus 191 vi~gD~~~~~~ 201 (371)
+++||+.+++.
T Consensus 107 ~~~gD~f~l~~ 117 (226)
T PRK13256 107 IYVADIFNLPK 117 (226)
T ss_pred EEEccCcCCCc
Confidence 99999999853
No 180
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=9.9e-06 Score=73.73 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=58.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
...+||||||.|.++..+|.. ...++|||+....+..+.++... .+|+.++++|+..+-.. + ..++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~-----~----~~~~~ 88 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRR-----L----FPPGS 88 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHH-----H----STTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhh-----c----ccCCc
Confidence 348999999999999999986 57899999999999988887764 45999999999874211 1 23467
Q ss_pred eeEEEecCC
Q 017450 218 FAKVVANIP 226 (371)
Q Consensus 218 ~d~VVaNlP 226 (371)
.+.|.-|.|
T Consensus 89 v~~i~i~FP 97 (195)
T PF02390_consen 89 VDRIYINFP 97 (195)
T ss_dssp EEEEEEES-
T ss_pred hheEEEeCC
Confidence 899998876
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.14 E-value=1.5e-05 Score=81.38 Aligned_cols=70 Identities=27% Similarity=0.509 Sum_probs=52.8
Q ss_pred CCEEEEEcCcccHHHHHHHHhC------CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh
Q 017450 142 GDIVLEIGPGTGSLTNVLLNAG------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~------~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
+..|+|||||+|.|....++.+ .+|+|||.++.++..+++....+ ++|+++++|+.++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-----------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-----------
Confidence 5789999999999987776654 48999999999888876653332 489999999999864
Q ss_pred ccCCCeeEEEec
Q 017450 213 KSSSGFAKVVAN 224 (371)
Q Consensus 213 ~~~~~~d~VVaN 224 (371)
+.+.|+||+-
T Consensus 256 --pekvDIIVSE 265 (448)
T PF05185_consen 256 --PEKVDIIVSE 265 (448)
T ss_dssp --SS-EEEEEE-
T ss_pred --CCceeEEEEe
Confidence 3579999974
No 182
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.14 E-value=4.7e-06 Score=76.05 Aligned_cols=110 Identities=15% Similarity=0.222 Sum_probs=83.5
Q ss_pred CcccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450 120 GQHYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (371)
Q Consensus 120 GQ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD 195 (371)
||-..++..++..|+...... ..+.|+|.-||.|.-|...+..+..|++||+|+.-+..|+.|.+-+| ++++++||
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD 151 (263)
T KOG2730|consen 72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD 151 (263)
T ss_pred ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence 454566666666666544322 56789999999999999999999999999999999999999998765 89999999
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHHHh
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQL 237 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~~L 237 (371)
++++--. +- ......|.|+..+|+.-++-+...+
T Consensus 152 ~ld~~~~-----lq---~~K~~~~~vf~sppwggp~y~~~~~ 185 (263)
T KOG2730|consen 152 FLDLASK-----LK---ADKIKYDCVFLSPPWGGPSYLRADV 185 (263)
T ss_pred HHHHHHH-----Hh---hhhheeeeeecCCCCCCcchhhhhh
Confidence 9886321 10 1234578999999987766544333
No 183
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.13 E-value=1.2e-05 Score=71.51 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=74.9
Q ss_pred CC-cHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhc---C-CCCCEEEEEcCcccHHHHHHHHhCC--eEEEEe
Q 017450 98 DD-DYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAA---V-QEGDIVLEIGPGTGSLTNVLLNAGA--TVLAIE 170 (371)
Q Consensus 98 ~~-~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~---~-~~~~~VLEIG~G~G~lt~~La~~~~--~V~aIE 170 (371)
|+ .|..-++.+++++....-|||. -....+++++..... + ...++|||+|||.|.+...|++.+- +++|||
T Consensus 21 WD~~Y~~El~Nfr~hgd~GEvWFg~--~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD 98 (227)
T KOG1271|consen 21 WDAAYELELTNFREHGDEGEVWFGE--DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD 98 (227)
T ss_pred HHHHHHHHHhhcccCCCccceecCC--cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence 44 5666677777777777778874 222345555555544 2 2445999999999999999999863 699999
Q ss_pred CCHHHHHHHHHHhccCC--C-eEEEEcccccchh
Q 017450 171 KDQHMVGLVRERFASID--Q-LKVLQEDFVKCHI 201 (371)
Q Consensus 171 ~d~~~i~~a~~~~~~~~--~-v~vi~gD~~~~~~ 201 (371)
.++..++.|+...+..+ + |++.+.|+.+-++
T Consensus 99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~ 132 (227)
T KOG1271|consen 99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF 132 (227)
T ss_pred cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc
Confidence 99999999887766543 3 8999999987543
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.10 E-value=9.5e-06 Score=78.19 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~ 205 (371)
.+.|++.-....++.|||+|||+|.++...++.|+ +|+|||-+ +|.++|++..+.+ .+++++.|-++++.+
T Consensus 166 ~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---- 240 (517)
T KOG1500|consen 166 QRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL---- 240 (517)
T ss_pred HHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC----
Confidence 34455544455789999999999999999999875 89999975 6889999888765 388999999999865
Q ss_pred hhHHHhhccCCCeeEEEecC
Q 017450 206 LSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNl 225 (371)
+++.|++|+.+
T Consensus 241 ---------PEk~DviISEP 251 (517)
T KOG1500|consen 241 ---------PEKVDVIISEP 251 (517)
T ss_pred ---------chhccEEEecc
Confidence 35688888764
No 185
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.9e-05 Score=74.20 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~ 203 (371)
++.|+..+.+.+|++|||-|+|+|.++.++++.- .+++..|.++...+.|.+.+++. +++++.+-|+....+..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 5778899999999999999999999999999873 59999999999999999999865 38999999998765531
Q ss_pred hhhhHHHhhccCCCeeEEEecCCC
Q 017450 204 HMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
....+|.|+-++|-
T Consensus 174 ----------ks~~aDaVFLDlPa 187 (314)
T KOG2915|consen 174 ----------KSLKADAVFLDLPA 187 (314)
T ss_pred ----------cccccceEEEcCCC
Confidence 24568999999874
No 186
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.09 E-value=1.9e-05 Score=75.84 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=60.6
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHH--HHhccCC-CeEEEEcccccchhhhhhh
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVR--ERFASID-QLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~--~~~~~~~-~v~vi~gD~~~~~~~~~~~ 206 (371)
+++...+..-.|++|||||||.|+.+..|+..|+ .|+|||.+.......+ +++-... .+..+---+.+++
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp------ 178 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP------ 178 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc------
Confidence 3455666566899999999999999999999986 6999999988766432 2332211 2223212223322
Q ss_pred hHHHhhccCCCeeEEEe-cCCCcccHHH
Q 017450 207 SLFERRKSSSGFAKVVA-NIPFNISTDV 233 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVa-NlPy~iss~i 233 (371)
..+.||+|++ ..-||-.+|+
T Consensus 179 -------~~~~FDtVF~MGVLYHrr~Pl 199 (315)
T PF08003_consen 179 -------NLGAFDTVFSMGVLYHRRSPL 199 (315)
T ss_pred -------ccCCcCEEEEeeehhccCCHH
Confidence 1367998875 5788887765
No 187
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.04 E-value=1.5e-05 Score=73.11 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhc-------cC----CCeEE
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFA-------SI----DQLKV 191 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~-------~~----~~v~v 191 (371)
+.+.....|++.+++.+++..+|||||.|......+.. ++ +.+|||+.+...+.|+.... .. +++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 45677888899999999999999999999987766654 55 59999999999887765332 11 37889
Q ss_pred EEcccccchhhhhhhhHHHhhccCCCeeEEEec-CCC
Q 017450 192 LQEDFVKCHIRSHMLSLFERRKSSSGFAKVVAN-IPF 227 (371)
Q Consensus 192 i~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaN-lPy 227 (371)
.+||+++.+.... +. ...|+|+.| .-|
T Consensus 106 ~~gdfl~~~~~~~---~~------s~AdvVf~Nn~~F 133 (205)
T PF08123_consen 106 IHGDFLDPDFVKD---IW------SDADVVFVNNTCF 133 (205)
T ss_dssp ECS-TTTHHHHHH---HG------HC-SEEEE--TTT
T ss_pred eccCccccHhHhh---hh------cCCCEEEEecccc
Confidence 9999998764321 11 235677665 554
No 188
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.03 E-value=2.3e-05 Score=73.00 Aligned_cols=77 Identities=25% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
...+||||||.|.++..+|+.. ..++|||+....+..|.+.+...+ |+.++++|+.++... + ...+.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~------~---~~~~s 119 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY------L---IPDGS 119 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh------c---CCCCC
Confidence 3589999999999999999984 589999999999998888876543 999999999886421 1 23348
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.+.|.-|.|=
T Consensus 120 l~~I~i~FPD 129 (227)
T COG0220 120 LDKIYINFPD 129 (227)
T ss_pred eeEEEEECCC
Confidence 8999999864
No 189
>PLN02823 spermine synthase
Probab=98.03 E-value=2.4e-05 Score=76.97 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=61.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhh
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.+++||.||+|.|.++..+++. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++-.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~----------- 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE----------- 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-----------
Confidence 5679999999999999998885 35899999999999999998853 3589999999987531
Q ss_pred ccCCCeeEEEecC
Q 017450 213 KSSSGFAKVVANI 225 (371)
Q Consensus 213 ~~~~~~d~VVaNl 225 (371)
...+.||+|+.++
T Consensus 172 ~~~~~yDvIi~D~ 184 (336)
T PLN02823 172 KRDEKFDVIIGDL 184 (336)
T ss_pred hCCCCccEEEecC
Confidence 1246799999885
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.99 E-value=2.2e-05 Score=78.45 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEccccc
Q 017450 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVK 198 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~ 198 (371)
+-..+....+...+ .|++||++-|=||.++...|..|+ +||+||.|...++.|++|++-++ .+.++++|+.+
T Consensus 203 lDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 203 LDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred HHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHH
Confidence 33334444444443 389999999999999999999988 99999999999999999998654 57899999988
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+--.. . .....||+||.+||=
T Consensus 280 ~l~~~-----~---~~g~~fDlIilDPPs 300 (393)
T COG1092 280 WLRKA-----E---RRGEKFDLIILDPPS 300 (393)
T ss_pred HHHHH-----H---hcCCcccEEEECCcc
Confidence 63221 0 134589999999994
No 191
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.91 E-value=1.4e-05 Score=77.27 Aligned_cols=116 Identities=27% Similarity=0.365 Sum_probs=94.2
Q ss_pred HHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHH-------
Q 017450 105 IKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVG------- 177 (371)
Q Consensus 105 ~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~------- 177 (371)
.+++.++.++.+...|- .-.|.++.--+++.+.+.+|+.|+|.-.|||.+....+.-|+.|+|-|||-.++.
T Consensus 173 R~li~~y~LK~R~yiGn-TSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~ 251 (421)
T KOG2671|consen 173 RELIEKYDLKKRCYIGN-TSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDE 251 (421)
T ss_pred HhHhhhcccccccccCC-cccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCc
Confidence 34566677777777776 7788888888899999999999999999999999988888999999999998887
Q ss_pred HHHHHhccCC----CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHH
Q 017450 178 LVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTD 232 (371)
Q Consensus 178 ~a~~~~~~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~ 232 (371)
-.+.|++.++ -+.++.+|+..-++.. ...+|.||+++||.+-..
T Consensus 252 si~aNFkQYg~~~~fldvl~~D~sn~~~rs-----------n~~fDaIvcDPPYGVRe~ 299 (421)
T KOG2671|consen 252 SIKANFKQYGSSSQFLDVLTADFSNPPLRS-----------NLKFDAIVCDPPYGVREG 299 (421)
T ss_pred chhHhHHHhCCcchhhheeeecccCcchhh-----------cceeeEEEeCCCcchhhh
Confidence 3456666554 3578889988876642 356999999999987643
No 192
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.90 E-value=7.2e-05 Score=66.71 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=49.9
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-----CeEEEEcccccchhhhhhhhHHHh
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-----QLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-----~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
...+.+|||+|||+|..+..++.. +.+|+..|.++ .++.++.|++.++ ++++..-|.-+-.. .+.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~----~~~--- 114 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELD----SDL--- 114 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HH----HHH---
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccc----ccc---
Confidence 457889999999999999999998 67999999999 9999999987542 55555555433110 111
Q ss_pred hccCCCeeEEEe-cCCCc
Q 017450 212 RKSSSGFAKVVA-NIPFN 228 (371)
Q Consensus 212 ~~~~~~~d~VVa-NlPy~ 228 (371)
.....||+|++ ..-|.
T Consensus 115 -~~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 115 -LEPHSFDVILASDVLYD 131 (173)
T ss_dssp -HS-SSBSEEEEES--S-
T ss_pred -cccccCCEEEEecccch
Confidence 13357898886 35553
No 193
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.90 E-value=4.9e-05 Score=78.58 Aligned_cols=204 Identities=12% Similarity=0.126 Sum_probs=122.2
Q ss_pred CcHHHHHHHHHhcCC-CcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeC
Q 017450 99 DDYHATIKALNSKGR-FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEK 171 (371)
Q Consensus 99 ~~~~~~~~~l~~~~~-~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~ 171 (371)
+..+.+.+++.+..- ...+..|| |.++.++++.|+..+.+.+..+|+|.-||+|.+-...++. . ..++|.|+
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~ 222 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEI 222 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeC
Confidence 355555555444433 34455588 9999999999999999888889999999999876555542 1 46899999
Q ss_pred CHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcccH---HHHH-----HhccC
Q 017450 172 DQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIST---DVIK-----QLLPM 240 (371)
Q Consensus 172 d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss---~il~-----~Ll~~ 240 (371)
++.....++-+.--.+ ++.+.++|-+.-+...-- .....+|.|++|+||+... ..+. +....
T Consensus 223 ~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~-------~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~ 295 (489)
T COG0286 223 NDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDK-------DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFY 295 (489)
T ss_pred CHHHHHHHHHHHHHhCCCccccccccccccCCccccc-------CCccceeEEEeCCCCCcccccccccccccccccccc
Confidence 9999999998864322 357777877765543100 1236699999999997321 1110 01111
Q ss_pred CCc-h-hHHHHHhhhhHHhhhc------cCCCCCCCCc--ceeeeeee---eccceEEEEeCCCCcccCCCCceEEEEEE
Q 017450 241 GDI-F-SEVVLLLQEETALRLV------EPSLRTSEYR--PINIFVNF---YSEPEYKFKVPRTNFFPQPKVDAAVVTFK 307 (371)
Q Consensus 241 g~~-~-~~~~lmvQke~a~rl~------~a~pg~k~Yg--~Lsv~~q~---~~~~~~~~~Vp~~~F~P~PkVdS~vv~l~ 307 (371)
+.. . ......+......++. .--|.+..++ ....+.+. -..++.+...|...|++. .+...++.|.
T Consensus 296 ~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~~~~~~ii~lp~~lF~~t-~i~~~Il~l~ 374 (489)
T COG0286 296 GVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLEDNLLEAIIGLPTGLFYNT-GIPTNILFLT 374 (489)
T ss_pred CCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhccceEEeeeCChhhcccC-CCCeEEEEee
Confidence 111 0 1111111222222222 0112222222 11111111 223466688999999999 8888899887
Q ss_pred EccC
Q 017450 308 LKQA 311 (371)
Q Consensus 308 ~~~~ 311 (371)
+.+.
T Consensus 375 k~k~ 378 (489)
T COG0286 375 KNKP 378 (489)
T ss_pred cCCC
Confidence 6543
No 194
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=2.9e-05 Score=78.83 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~ 204 (371)
+-+...+-++++...++.+||+-||||.++..+++...+|+|||+++..++.|+.+...++ |.+++.|.++++-..
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s-- 446 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS-- 446 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch--
Confidence 3344555667788888999999999999999999999999999999999999999988765 999999977765321
Q ss_pred hhhHHHhhccCCCee-EEEecCCCcccHH-HHHHhcc
Q 017450 205 MLSLFERRKSSSGFA-KVVANIPFNISTD-VIKQLLP 239 (371)
Q Consensus 205 ~~~l~~~~~~~~~~d-~VVaNlPy~iss~-il~~Ll~ 239 (371)
++. ...+.-+ ++|.++|..-... ++..|..
T Consensus 447 ---l~~--~~~~~~~~v~iiDPpR~Glh~~~ik~l~~ 478 (534)
T KOG2187|consen 447 ---LLT--PCCDSETLVAIIDPPRKGLHMKVIKALRA 478 (534)
T ss_pred ---hcc--cCCCCCceEEEECCCcccccHHHHHHHHh
Confidence 110 0111233 7788999754443 3344443
No 195
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.87 E-value=9.2e-05 Score=71.42 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCC-----CCEEEEEcCcccHHHHHHH-H-hCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEccc
Q 017450 128 EINDQLAAAAAVQE-----GDIVLEIGPGTGSLTNVLL-N-AGATVLAIEKDQHMVGLVRERFASID----QLKVLQEDF 196 (371)
Q Consensus 128 ~v~~~i~~~l~~~~-----~~~VLEIG~G~G~lt~~La-~-~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~ 196 (371)
+.+..|..++.... .-++||||||.-..=-.|. . .+.+++|.|+|+..++.|++++..++ +|+++...-
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC
Confidence 44556666665432 3489999999775433333 2 38899999999999999999998762 688876532
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHH
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~i 233 (371)
...-+.. +. ...+.+|...+|+||+-+.+-
T Consensus 164 ~~~i~~~----i~---~~~e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 164 PDNIFDG----II---QPNERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp T-SSTTT----ST---T--S-EEEEEE-----SS---
T ss_pred ccccchh----hh---cccceeeEEecCCccccChhh
Confidence 2111111 11 123579999999999887643
No 196
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=3.4e-05 Score=69.97 Aligned_cols=73 Identities=19% Similarity=0.198 Sum_probs=57.2
Q ss_pred CEEEEEcCcccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHHhccC--CCeE-EEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGSLTNVLLN-AGATVLAIEKDQHMVGLVRERFASI--DQLK-VLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~-vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
..|||+|||||..-...-- .+.+||++|.++.|-++|.+.+++. .++. ++.+|..+++. ...+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-----------l~d~s~ 146 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-----------LADGSY 146 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-----------cccCCe
Confidence 3589999999986555443 4789999999999999999888754 3676 89999998862 134789
Q ss_pred eEEEecCC
Q 017450 219 AKVVANIP 226 (371)
Q Consensus 219 d~VVaNlP 226 (371)
|.||.-+-
T Consensus 147 DtVV~Tlv 154 (252)
T KOG4300|consen 147 DTVVCTLV 154 (252)
T ss_pred eeEEEEEE
Confidence 99997653
No 197
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.83 E-value=8.5e-05 Score=63.88 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHH-----h-CCeEEEEeCCHHHHHHHHHHhcc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLN-----A-GATVLAIEKDQHMVGLVRERFAS 185 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~-----~-~~~V~aIE~d~~~i~~a~~~~~~ 185 (371)
.+...|+|+|||.|+|+..|+. . +.+|++||.++..++.+.++...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 5678999999999999999998 3 67999999999999988877653
No 198
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.80 E-value=0.00013 Score=72.79 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=65.2
Q ss_pred CEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
-+|||..||+|..++.++.. | .+|+++|+|+..++.+++|.+.++ +++++++|+..+... ....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-----------~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-----------RNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-----------hCCC
Confidence 48999999999999999987 4 489999999999999999997654 688999999876321 1246
Q ss_pred eeEEEecCCCcccHHHHH
Q 017450 218 FAKVVANIPFNISTDVIK 235 (371)
Q Consensus 218 ~d~VVaNlPy~iss~il~ 235 (371)
||+|+.++ |.-..+.+.
T Consensus 115 fDvIdlDP-fGs~~~fld 131 (374)
T TIGR00308 115 FHVIDIDP-FGTPAPFVD 131 (374)
T ss_pred CCEEEeCC-CCCcHHHHH
Confidence 99999988 665556554
No 199
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.75 E-value=0.00026 Score=68.68 Aligned_cols=97 Identities=11% Similarity=0.384 Sum_probs=78.1
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEccccc
Q 017450 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVK 198 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~ 198 (371)
||..-|-+++.+++.+.+.+++.++|.=+|.|.-|..+++. .++|+|+|.|+.+++.+++++..++ +++++++++.+
T Consensus 1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 35556778889999999899999999999999999999986 3799999999999999999887653 89999999988
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
+... +.. .....+|.|+.|+
T Consensus 81 l~~~------l~~-~~~~~vDgIl~DL 100 (305)
T TIGR00006 81 FFEH------LDE-LLVTKIDGILVDL 100 (305)
T ss_pred HHHH------HHh-cCCCcccEEEEec
Confidence 6421 111 1224578888776
No 200
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.75 E-value=0.00015 Score=69.76 Aligned_cols=93 Identities=22% Similarity=0.298 Sum_probs=65.9
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID----QLKVLQEDFV 197 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~ 197 (371)
|+-..+....+...+ .+++||++-|=||.++...+..|+ +|++||.+..+++.+++|+.-++ +++++.+|+.
T Consensus 108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf 184 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF 184 (286)
T ss_dssp -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence 454455555555543 578999999999999999888776 79999999999999999987543 7899999998
Q ss_pred cchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 198 ~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+.--. + ....+||+||.+||=
T Consensus 185 ~~l~~-----~----~~~~~fD~IIlDPPs 205 (286)
T PF10672_consen 185 KFLKR-----L----KKGGRFDLIILDPPS 205 (286)
T ss_dssp HHHHH-----H----HHTT-EEEEEE--SS
T ss_pred HHHHH-----H----hcCCCCCEEEECCCC
Confidence 74211 1 124689999999994
No 201
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.73 E-value=7.9e-05 Score=63.47 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=46.8
Q ss_pred EEEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450 144 IVLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~ 198 (371)
++||||||.|..+..++..+. +|+++|.++.+++.++++++.+ +++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998754 6999999999999999998754 468888776654
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.00032 Score=64.69 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=76.1
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcc
Q 017450 122 HYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID---QLKVLQED 195 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD 195 (371)
...+.++....+...+....++++||||.=||+++..+|.. +++|+++|+|++.++.+.+..+..+ .+++++|+
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 36777888888888888888999999999999999888875 6799999999999999977765443 89999999
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
+.+.-. +++++ .+.+.||.+|-
T Consensus 134 a~esLd-----~l~~~-~~~~tfDfaFv 155 (237)
T KOG1663|consen 134 ALESLD-----ELLAD-GESGTFDFAFV 155 (237)
T ss_pred hhhhHH-----HHHhc-CCCCceeEEEE
Confidence 987421 22222 23577998884
No 203
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.65 E-value=0.00022 Score=73.24 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=72.5
Q ss_pred cCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcc
Q 017450 123 YMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQED 195 (371)
Q Consensus 123 fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD 195 (371)
|.++.......+..+ .+.++++|||+++|.|.=|..+++. ...|+|+|+++..+..+++++...+ |+.+.+.|
T Consensus 93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D 172 (470)
T PRK11933 93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD 172 (470)
T ss_pred EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 333333344444555 6789999999999999999999986 2589999999999999999998765 78899999
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+.++... .+..||.|+.+.|=
T Consensus 173 ~~~~~~~-----------~~~~fD~ILvDaPC 193 (470)
T PRK11933 173 GRVFGAA-----------LPETFDAILLDAPC 193 (470)
T ss_pred hhhhhhh-----------chhhcCeEEEcCCC
Confidence 8765321 12568999988883
No 204
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.61 E-value=0.00014 Score=68.33 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=57.3
Q ss_pred ccCcccCCCHHHHHHHHHHhc-----CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEE
Q 017450 118 SLGQHYMLNSEINDQLAAAAA-----VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVL 192 (371)
Q Consensus 118 ~lGQ~fl~~~~v~~~i~~~l~-----~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi 192 (371)
..|.-|+.+.+-..+++.... .....++||||+|.|..|..|+..-.+|++.|.++.|...++++ +.+++
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----GFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----CCeEE
Confidence 456778888877777776552 22456899999999999999999888999999999999888875 56665
Q ss_pred Ec
Q 017450 193 QE 194 (371)
Q Consensus 193 ~g 194 (371)
..
T Consensus 141 ~~ 142 (265)
T PF05219_consen 141 DI 142 (265)
T ss_pred eh
Confidence 33
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.58 E-value=0.00044 Score=65.19 Aligned_cols=75 Identities=21% Similarity=0.348 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhh
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.+++||-||-|.|..+..+++.. .+|++||+|+..++.+++.+.. .++++++.+|+..+--.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~---------- 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE---------- 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----------
Confidence 67899999999999999999874 6899999999999999998753 35899999999875321
Q ss_pred ccCC-CeeEEEecCC
Q 017450 213 KSSS-GFAKVVANIP 226 (371)
Q Consensus 213 ~~~~-~~d~VVaNlP 226 (371)
... .||+|+.+++
T Consensus 146 -~~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 146 -TQEEKYDVIIVDLT 159 (246)
T ss_dssp -SSST-EEEEEEESS
T ss_pred -ccCCcccEEEEeCC
Confidence 224 7999998765
No 206
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00063 Score=65.35 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=60.5
Q ss_pred CEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC------CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 143 DIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~------~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
++||-||-|.|..++.++++. .+++.||+|+..++.+++.+... ++++++.+|+.++--. .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~-----------~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD-----------C 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh-----------C
Confidence 699999999999999999985 58999999999999999998632 5889999999886321 2
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
..+||+|+.+.
T Consensus 147 ~~~fDvIi~D~ 157 (282)
T COG0421 147 EEKFDVIIVDS 157 (282)
T ss_pred CCcCCEEEEcC
Confidence 34799999864
No 207
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.46 E-value=0.00052 Score=71.34 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=60.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
..+..+||||||.|.++..+|.. ...++|||+....+..+....... .|+.++.+|+..+.. . ...
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------~----~~~ 415 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------D----LPN 415 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------h----cCc
Confidence 35679999999999999999987 468999999999888877765443 489998888654321 1 134
Q ss_pred CCeeEEEecCCC
Q 017450 216 SGFAKVVANIPF 227 (371)
Q Consensus 216 ~~~d~VVaNlPy 227 (371)
...|.|.-|.|=
T Consensus 416 ~sv~~i~i~FPD 427 (506)
T PRK01544 416 NSLDGIYILFPD 427 (506)
T ss_pred ccccEEEEECCC
Confidence 568899998764
No 208
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00021 Score=66.39 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=41.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhccC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI 186 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~~~ 186 (371)
..+..+|||||-+|.+|..+++. ++ .|+|+|||+.++..|+++++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 35778999999999999999997 54 7999999999999999998643
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.42 E-value=0.00043 Score=67.76 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=54.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
.+|.++|||||++|..|..|+++|.+|+|||..+ |. ..+...++|+.+.+|...... ....+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~p------------~~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFRP------------PRKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccCC------------CCCCCC
Confidence 5788999999999999999999999999999543 33 333455789999999877642 135689
Q ss_pred EEEecC
Q 017450 220 KVVANI 225 (371)
Q Consensus 220 ~VVaNl 225 (371)
.+|++.
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999875
No 210
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.39 E-value=0.0014 Score=61.21 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCCcccccCcccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-
Q 017450 112 GRFPRKSLGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID- 187 (371)
Q Consensus 112 ~~~~~k~lGQ~fl~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~- 187 (371)
.-.+...+.|.+.+...++.+....+.- -.|++||=+|=.--. ++..+.....+|+.+|+|+++++..++..+..+
T Consensus 13 RP~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl 92 (243)
T PF01861_consen 13 RPEPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL 92 (243)
T ss_dssp -----GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-
T ss_pred CCCCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC
Confidence 4467889999999999999988877754 368999999855443 223333346799999999999999998877655
Q ss_pred CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 188 ~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
+++.++.|+.+--.++ -.+.||+++.+|||.+.
T Consensus 93 ~i~~~~~DlR~~LP~~----------~~~~fD~f~TDPPyT~~ 125 (243)
T PF01861_consen 93 PIEAVHYDLRDPLPEE----------LRGKFDVFFTDPPYTPE 125 (243)
T ss_dssp -EEEE---TTS---TT----------TSS-BSEEEE---SSHH
T ss_pred ceEEEEecccccCCHH----------HhcCCCEEEeCCCCCHH
Confidence 6899999987642221 23789999999999764
No 211
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00066 Score=63.10 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=37.2
Q ss_pred CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
+.++|+|||+|.-++.+++.-.+|+|+|+++.|+..|++...
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCC
Confidence 389999999997777888887899999999999999988764
No 212
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0014 Score=60.99 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=48.8
Q ss_pred cccCCCHHHHHHHHHHhc-CCCC--CEEEEEcCcccHHHHHHHHhC----CeEEEEeCCHHHHHHHHHHhccC
Q 017450 121 QHYMLNSEINDQLAAAAA-VQEG--DIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASI 186 (371)
Q Consensus 121 Q~fl~~~~v~~~i~~~l~-~~~~--~~VLEIG~G~G~lt~~La~~~----~~V~aIE~d~~~i~~a~~~~~~~ 186 (371)
..|..|.+.+.+=...+. .... .+|||||||.|.....+++-. -.|+++|.+++.++..+++....
T Consensus 48 ~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred ccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc
Confidence 357777776655443333 2222 279999999999999998852 57999999999999999886543
No 213
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.06 E-value=0.0011 Score=59.08 Aligned_cols=75 Identities=23% Similarity=0.423 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+.+|||+||++|..|..+++++ .+|+|||+.+. ....++..+.+|+.+....+.+.+... .....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~--~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLP--ESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHG--TTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhcc--ccccC
Confidence 34799999999999999999987 68999999876 122477888899876533222222211 01257
Q ss_pred eeEEEecCC
Q 017450 218 FAKVVANIP 226 (371)
Q Consensus 218 ~d~VVaNlP 226 (371)
+|.|+++.-
T Consensus 92 ~dlv~~D~~ 100 (181)
T PF01728_consen 92 FDLVLSDMA 100 (181)
T ss_dssp ESEEEE---
T ss_pred cceeccccc
Confidence 999999873
No 214
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.98 E-value=0.0053 Score=57.25 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccc
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFV 197 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~ 197 (371)
..+.......+..+|||||.|.|.++..+++. +.+++..|. +..++.+++ .++++++.||+.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f 153 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF 153 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH
Confidence 34555666667789999999999999999987 568999998 788888887 459999999998
No 215
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0039 Score=61.95 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=74.2
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC----CeEEEEeCCHHHHHHHHHHhccCC--CeEEEEccc
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG----ATVLAIEKDQHMVGLVRERFASID--QLKVLQEDF 196 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~----~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~ 196 (371)
|.++..........+++.+|++|||.-++.|.=|..+++.. ..|+|+|+|+.-+..+++++...+ |+.+++.|+
T Consensus 138 ~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~ 217 (355)
T COG0144 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA 217 (355)
T ss_pred EEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 34444444555567889999999999999999999999863 457999999999999999998776 778889998
Q ss_pred ccchhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
....-.. .....||.|+...|=.
T Consensus 218 ~~~~~~~---------~~~~~fD~iLlDaPCS 240 (355)
T COG0144 218 RRLAELL---------PGGEKFDRILLDAPCS 240 (355)
T ss_pred ccccccc---------cccCcCcEEEECCCCC
Confidence 7653210 1123599999988853
No 216
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.97 E-value=0.0043 Score=55.97 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=52.8
Q ss_pred EEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 144 IVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
+++|||+|-|.=+..++-. ..+++.+|....-+..++.-.... .|++++++++.+. .....||
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~-------------~~~~~fd 117 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP-------------EYRESFD 117 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT-------------TTTT-EE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc-------------ccCCCcc
Confidence 8999999999977777654 568999999999888888776654 4899999999881 1246799
Q ss_pred EEEe
Q 017450 220 KVVA 223 (371)
Q Consensus 220 ~VVa 223 (371)
.|++
T Consensus 118 ~v~a 121 (184)
T PF02527_consen 118 VVTA 121 (184)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 217
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.96 E-value=0.0049 Score=56.87 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHH--hCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchh
Q 017450 127 SEINDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLN--AGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHI 201 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~--~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~ 201 (371)
.++.+.+.-.-.... +++++|||+|.|.=+..||- ...+|+-+|....-+..++.-.... +|++++++.++++..
T Consensus 52 rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~ 131 (215)
T COG0357 52 RHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ 131 (215)
T ss_pred HHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc
Confidence 344444443333334 68999999999998888763 3567999999999888888877654 489999999998753
Q ss_pred hhhhhhHHHhhccCCC-eeEEEec--CCCcccHHHHHHhccCCC
Q 017450 202 RSHMLSLFERRKSSSG-FAKVVAN--IPFNISTDVIKQLLPMGD 242 (371)
Q Consensus 202 ~~~~~~l~~~~~~~~~-~d~VVaN--lPy~iss~il~~Ll~~g~ 242 (371)
. .. ||+|.+= -+.+...++...|+..+.
T Consensus 132 ~-------------~~~~D~vtsRAva~L~~l~e~~~pllk~~g 162 (215)
T COG0357 132 E-------------KKQYDVVTSRAVASLNVLLELCLPLLKVGG 162 (215)
T ss_pred c-------------cccCcEEEeehccchHHHHHHHHHhcccCC
Confidence 1 23 8888752 222334455556655543
No 218
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.95 E-value=0.0046 Score=59.56 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~ 199 (371)
+...-....+..+.+.+++.|||..+|.|.=|..+++. ...|+|.|+++..+..+++++...+ ++.++..|+.+.
T Consensus 69 vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~ 148 (283)
T PF01189_consen 69 VQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL 148 (283)
T ss_dssp EHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH
T ss_pred ecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc
Confidence 33333444556678889999999999999999999986 3589999999999999999988765 788888888876
Q ss_pred hhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 200 HIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
.... ....||.|+.+.|=.-+
T Consensus 149 ~~~~----------~~~~fd~VlvDaPCSg~ 169 (283)
T PF01189_consen 149 DPKK----------PESKFDRVLVDAPCSGL 169 (283)
T ss_dssp HHHH----------HTTTEEEEEEECSCCCG
T ss_pred cccc----------cccccchhhcCCCccch
Confidence 4321 12459999999885443
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=96.95 E-value=0.0062 Score=57.96 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc------CCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS------IDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~------~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
..+++||=||-|.|...+.++++..+|+-||+|+++++.+++.++. .++++++.. +.+ .
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--------------~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--------------L 135 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--------------c
Confidence 4678999999999999999999867999999999999999996653 257888751 111 1
Q ss_pred cCCCeeEEEecCCC
Q 017450 214 SSSGFAKVVANIPF 227 (371)
Q Consensus 214 ~~~~~d~VVaNlPy 227 (371)
..+.||+||....|
T Consensus 136 ~~~~fDVIIvDs~~ 149 (262)
T PRK00536 136 DIKKYDLIICLQEP 149 (262)
T ss_pred cCCcCCEEEEcCCC
Confidence 23579999998544
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.93 E-value=0.0036 Score=57.43 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=48.0
Q ss_pred EEEEcCcccHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450 145 VLEIGPGTGSLTNVLLNAGA--TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (371)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~--~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~ 199 (371)
|.||||--|++..+|++.+. +++++|+++.-++.|++++...+ ++++..||.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~ 60 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV 60 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence 68999999999999999875 89999999999999999998764 799999998874
No 221
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.89 E-value=0.0052 Score=59.72 Aligned_cols=93 Identities=13% Similarity=0.293 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh
Q 017450 127 SEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 127 ~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~ 203 (371)
|-+++.+++.+.+.++...+|.=-|.|..|..+++. +++|+|+|.|+.+++.+++++... +++.++++++.++.-.
T Consensus 6 PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~- 84 (310)
T PF01795_consen 6 PVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEY- 84 (310)
T ss_dssp -TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHH-
T ss_pred cccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHH-
Confidence 456778888888889999999999999999999986 579999999999999999998765 4899999999887532
Q ss_pred hhhhHHHhhccCCCeeEEEecC
Q 017450 204 HMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 204 ~~~~l~~~~~~~~~~d~VVaNl 225 (371)
+........+|.|+.++
T Consensus 85 -----l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 85 -----LKELNGINKVDGILFDL 101 (310)
T ss_dssp -----HHHTTTTS-EEEEEEE-
T ss_pred -----HHHccCCCccCEEEEcc
Confidence 11101235688888766
No 222
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.86 E-value=0.003 Score=60.50 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=59.0
Q ss_pred EEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450 144 IVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV 222 (371)
+|+|+.||.|.++..+.+.|.+ |.++|+|+..++..+.|+.. . ++.+|+.++...+. .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---~-~~~~Di~~~~~~~~----------~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---K-LIEGDITKIDEKDF----------IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---C-CccCccccCchhhc----------CCCCCEEE
Confidence 5899999999999999888875 77999999999999998753 2 67888888764310 25689999
Q ss_pred ecCCCcccH
Q 017450 223 ANIPFNIST 231 (371)
Q Consensus 223 aNlPy~iss 231 (371)
+.+|-.-.|
T Consensus 68 ~gpPCq~fS 76 (275)
T cd00315 68 GGFPCQPFS 76 (275)
T ss_pred eCCCChhhh
Confidence 999975443
No 223
>PHA01634 hypothetical protein
Probab=96.82 E-value=0.0025 Score=53.74 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=41.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFAS 185 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~ 185 (371)
.+++|+|||.+.|.++++++-+|+ +|+++|.++.+.+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 578999999999999999999976 799999999999999998864
No 224
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0021 Score=57.99 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhh
Q 017450 128 EINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~ 205 (371)
..++.+...-+.-.+++|||.|+|+|--+...+..|+ .|++.|+++...+.++-|.+.++ ++.+.+.|..- +
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----- 139 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----- 139 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C-----
Confidence 4455566555556789999999999999998888875 79999999999999888887776 77888888765 2
Q ss_pred hhHHHhhccCCCeeEEE-ecCCCccc
Q 017450 206 LSLFERRKSSSGFAKVV-ANIPFNIS 230 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VV-aNlPy~is 230 (371)
++.+|+++ |++-|+-+
T Consensus 140 ---------~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 140 ---------PPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ---------CcceeEEEeeceecCch
Confidence 24577665 55666543
No 225
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.80 E-value=0.0053 Score=60.44 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc--------CC----CeEEEEcccccchhhhhhhh
Q 017450 141 EGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS--------ID----QLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 141 ~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~--------~~----~v~vi~gD~~~~~~~~~~~~ 207 (371)
++.+|||+|||-|. +..+....-.+++|+|++...++.|++++.. .. ...++.+|.....+.+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~- 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP- 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS-
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc-
Confidence 67899999999777 5555554456899999999999999999821 11 3467788887654432110
Q ss_pred HHHhhccCCCeeEEEecCC
Q 017450 208 LFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlP 226 (371)
.....||+|-+-..
T Consensus 141 -----~~~~~FDvVScQFa 154 (331)
T PF03291_consen 141 -----PRSRKFDVVSCQFA 154 (331)
T ss_dssp -----STTS-EEEEEEES-
T ss_pred -----ccCCCcceeehHHH
Confidence 11247888766543
No 226
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.62 E-value=0.0065 Score=55.19 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=45.7
Q ss_pred cCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Q 017450 123 YMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 123 fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~ 181 (371)
...+..++++++...- .+|+.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4566788999987764 578999999999999888888889999999999999999874
No 227
>PRK11524 putative methyltransferase; Provisional
Probab=96.62 E-value=0.0069 Score=58.22 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
.+.+++++++...- .+|+.|||.-+|+|..+.+..+.|.+.+|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 44677888887765 578999999999999888877789999999999999999999985
No 228
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=0.02 Score=55.11 Aligned_cols=78 Identities=13% Similarity=0.290 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccc
Q 017450 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKC 199 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~ 199 (371)
..-+-+++..++.+.+.++...+|.=-|-|..+..+++.. ++++|+|.|+.+++.|++.+..+ ++++++++.+.++
T Consensus 6 ~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 6 RHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred CccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3345678889999999999999999999999999999873 57999999999999999998775 4999999998876
Q ss_pred hh
Q 017450 200 HI 201 (371)
Q Consensus 200 ~~ 201 (371)
..
T Consensus 86 ~~ 87 (314)
T COG0275 86 AE 87 (314)
T ss_pred HH
Confidence 53
No 229
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0083 Score=55.55 Aligned_cols=78 Identities=12% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
....++|||||.|++...+...+. +++-+|.+-.|++.++..-. + .+....+|-..+++. +..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd--p~i~~~~~v~DEE~Ldf~------------ens 137 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD--PSIETSYFVGDEEFLDFK------------ENS 137 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC--CceEEEEEecchhccccc------------ccc
Confidence 346899999999999999998864 89999999999998876532 3 344556887777764 356
Q ss_pred eeEEEecCCCcccHH
Q 017450 218 FAKVVANIPFNISTD 232 (371)
Q Consensus 218 ~d~VVaNlPy~iss~ 232 (371)
+|.|++.+-.+|+.+
T Consensus 138 ~DLiisSlslHW~Nd 152 (325)
T KOG2940|consen 138 VDLIISSLSLHWTND 152 (325)
T ss_pred hhhhhhhhhhhhhcc
Confidence 888888877776653
No 230
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.29 E-value=0.012 Score=56.68 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=54.3
Q ss_pred EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEE
Q 017450 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVV 222 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VV 222 (371)
+++|+-||.|.++..+.+.|. -|.++|+|+..++..+.|+. .+..+|+.+++.... +. ..|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l---------~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDL---------PK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHH---------HH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccc---------cc-cceEEE
Confidence 689999999999999999986 47799999999999999985 788999999876521 11 489999
Q ss_pred ecCC
Q 017450 223 ANIP 226 (371)
Q Consensus 223 aNlP 226 (371)
+.+|
T Consensus 67 ggpP 70 (335)
T PF00145_consen 67 GGPP 70 (335)
T ss_dssp EE--
T ss_pred eccC
Confidence 9887
No 231
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.27 E-value=0.024 Score=55.54 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHHHHHHhc--cCCCeEE--EEcccccc
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRERFA--SIDQLKV--LQEDFVKC 199 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~a~~~~~--~~~~v~v--i~gD~~~~ 199 (371)
...|++.+. ++..++|+|||.|.=|..|++. ....++||++.++++.+.+++. ..+.+++ +.||+.+.
T Consensus 67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 67 SSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 345555543 5668999999999988877653 2479999999999999999887 3466665 78998664
No 232
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.17 E-value=0.0082 Score=60.19 Aligned_cols=53 Identities=36% Similarity=0.498 Sum_probs=44.8
Q ss_pred EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 144 IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
.|||||+|||.|+...+..|+ .|+|+|.-..|.+.|++....+| +++++..--
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 799999999999988887765 79999999999999999887764 777775433
No 233
>PRK13699 putative methylase; Provisional
Probab=96.16 E-value=0.021 Score=53.27 Aligned_cols=61 Identities=21% Similarity=0.196 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (371)
Q Consensus 124 l~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~ 185 (371)
..+.++.+.++.... .+|+.|||.-||+|..+.+..+.|.+.+|+|++++.++.+.+++..
T Consensus 147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 345677787776544 4789999999999998888888899999999999999999998764
No 234
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.13 E-value=0.011 Score=55.25 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=54.3
Q ss_pred HHHHHhcCCCC--CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---C--------CCeEEEEccccc
Q 017450 132 QLAAAAAVQEG--DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---I--------DQLKVLQEDFVK 198 (371)
Q Consensus 132 ~i~~~l~~~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~--------~~v~vi~gD~~~ 198 (371)
.|+..++++++ ++|||.=+|.|.=+..++..|++|+++|.++-+...++.-+.. . .+++++++|+.+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 56677777665 4999999999999999998899999999999988776643321 1 278999999988
Q ss_pred chhhhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
+-.. ....+|+|.-+|=|.
T Consensus 144 ~L~~-----------~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 144 YLRQ-----------PDNSFDVVYFDPMFP 162 (234)
T ss_dssp HCCC-----------HSS--SEEEE--S--
T ss_pred HHhh-----------cCCCCCEEEECCCCC
Confidence 6321 236799999887663
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.03 Score=52.24 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=54.7
Q ss_pred HHHHhcCC-CCCEEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHhccCCCeEEE-EcccccchhhhhhhhHH
Q 017450 133 LAAAAAVQ-EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERFASIDQLKVL-QEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 133 i~~~l~~~-~~~~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi-~gD~~~~~~~~~~~~l~ 209 (371)
+++...+. +++.+||||+-||.+|..++++|+ +|+|||.-...+.. .++..+++.++ ..|+..+...+.
T Consensus 70 ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~rV~~~E~tN~r~l~~~~~----- 141 (245)
T COG1189 70 ALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPRVIVLERTNVRYLTPEDF----- 141 (245)
T ss_pred HHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCcEEEEecCChhhCCHHHc-----
Confidence 33444433 688999999999999999999965 89999987543321 23333455444 355655544321
Q ss_pred HhhccCCCeeEEEecCCCc
Q 017450 210 ERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlPy~ 228 (371)
.+..|.+++..-|-
T Consensus 142 -----~~~~d~~v~DvSFI 155 (245)
T COG1189 142 -----TEKPDLIVIDVSFI 155 (245)
T ss_pred -----ccCCCeEEEEeehh
Confidence 23678888887763
No 236
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.94 E-value=0.013 Score=53.76 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=49.4
Q ss_pred cccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHH-HHHHhccCCCe
Q 017450 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGL-VRERFASIDQL 189 (371)
Q Consensus 117 k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~-a~~~~~~~~~v 189 (371)
.++|...+-.|.-...+-+.+--.+++.|+|+|.-.|.++..+|.. .++|+|||+|-+.... +.+...-.++|
T Consensus 8 ~w~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI 87 (206)
T PF04989_consen 8 SWLGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRI 87 (206)
T ss_dssp EETTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTE
T ss_pred cCCCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCce
Confidence 5667666666655444444444446789999999999999888762 3699999998654432 22221222589
Q ss_pred EEEEcccccchh
Q 017450 190 KVLQEDFVKCHI 201 (371)
Q Consensus 190 ~vi~gD~~~~~~ 201 (371)
++++||..+...
T Consensus 88 ~~i~Gds~d~~~ 99 (206)
T PF04989_consen 88 TFIQGDSIDPEI 99 (206)
T ss_dssp EEEES-SSSTHH
T ss_pred EEEECCCCCHHH
Confidence 999999987654
No 237
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.71 E-value=0.019 Score=56.11 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=54.4
Q ss_pred EEEEcCcccHHHHHHHHhCCeE-EEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEe
Q 017450 145 VLEIGPGTGSLTNVLLNAGATV-LAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223 (371)
Q Consensus 145 VLEIG~G~G~lt~~La~~~~~V-~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVa 223 (371)
|+|+-||.|.++..+.+.|.++ .++|+|+..++..+.|+. + .++++|+.+++..+ .+..|++++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~---~-~~~~~Di~~~~~~~-----------~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG---N-KVPFGDITKISPSD-----------IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC---C-CCCccChhhhhhhh-----------CCCcCEEEe
Confidence 6899999999999998888875 589999999999999875 3 56678988876432 245799999
Q ss_pred cCC
Q 017450 224 NIP 226 (371)
Q Consensus 224 NlP 226 (371)
.+|
T Consensus 66 g~P 68 (315)
T TIGR00675 66 GFP 68 (315)
T ss_pred cCC
Confidence 887
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.67 E-value=0.044 Score=50.16 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++..|+|+|+..|.-+..+++.. ..|+|||+++- ...+++.++++|+.+-+..+.+... ....
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~~l~~~----l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLEKLLEA----LGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHHHHHHH----cCCC
Confidence 478999999999999999999873 24999999864 1234799999999876544322221 1233
Q ss_pred CeeEEEecCCCc
Q 017450 217 GFAKVVANIPFN 228 (371)
Q Consensus 217 ~~d~VVaNlPy~ 228 (371)
+.|+|++.+.-+
T Consensus 111 ~~DvV~sD~ap~ 122 (205)
T COG0293 111 PVDVVLSDMAPN 122 (205)
T ss_pred CcceEEecCCCC
Confidence 469999875433
No 239
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.63 E-value=0.051 Score=49.74 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC--CCe-EEEEcccccc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI--DQL-KVLQEDFVKC 199 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~--~~v-~vi~gD~~~~ 199 (371)
+.+|||||||||-.+.+++.. .....--|.|+............. +|+ .-+.-|+.+-
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 336999999999999999987 457789999999876666655433 243 2334455443
No 240
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.62 E-value=0.041 Score=52.68 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=41.0
Q ss_pred HHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC
Q 017450 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID 187 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~ 187 (371)
.+...+....+.+|||+|+|+|.-+....+. -.+++++|.++.|.+.++..+...+
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 3333333346779999999999866555543 3479999999999999988776543
No 241
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.61 E-value=0.036 Score=52.13 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKC 199 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~ 199 (371)
.+++|+|||||.=-++...... +..++|+|+|..+++.+...+...+ +.++...|.+.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc
Confidence 4789999999999999876654 4689999999999999998876654 777888888764
No 242
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.54 E-value=0.041 Score=51.09 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCC------CCCEEEEEcCcccHHHHHHH--HhCCeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcc
Q 017450 128 EINDQLAAAAAVQ------EGDIVLEIGPGTGSLTNVLL--NAGATVLAIEKDQHMVGLVRERFASID----QLKVLQED 195 (371)
Q Consensus 128 ~v~~~i~~~l~~~------~~~~VLEIG~G~G~lt~~La--~~~~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD 195 (371)
..+..+..++... ++-++||||.|--..=-.+- +.|.+.+|-|+|+..++.|+..+..++ .+++....
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 4556666655432 33478999887544322222 237899999999999999999987764 34544322
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHH
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il 234 (371)
=.+.-+.. .+ ...+.||...+|+||+-+.+-.
T Consensus 139 ~~~~if~g----ii---g~nE~yd~tlCNPPFh~s~~da 170 (292)
T COG3129 139 DSDAIFNG----II---GKNERYDATLCNPPFHDSAADA 170 (292)
T ss_pred Cccccccc----cc---cccceeeeEecCCCcchhHHHH
Confidence 11111111 11 1246799999999998876543
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.46 E-value=0.046 Score=53.94 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=60.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHh--cc-------CCCeEEEEcccccchhhhhhhhH
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERF--AS-------IDQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~--~~-------~~~v~vi~gD~~~~~~~~~~~~l 208 (371)
+...+||-+|-|.|--.+.+.+. -.+++-||.||+|++.++.+. .+ .++++++..|+.++--.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~------ 361 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT------ 361 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh------
Confidence 45679999999999999999986 358999999999999998432 21 24899999999876321
Q ss_pred HHhhccCCCeeEEEecCCC
Q 017450 209 FERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy 227 (371)
....||.||-++|-
T Consensus 362 -----a~~~fD~vIVDl~D 375 (508)
T COG4262 362 -----AADMFDVVIVDLPD 375 (508)
T ss_pred -----hcccccEEEEeCCC
Confidence 34579999988873
No 244
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.36 E-value=0.033 Score=54.10 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=58.4
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC----C----CeEEEEcccccchhhhhhhhHH
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI----D----QLKVLQEDFVKCHIRSHMLSLF 209 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~----~----~v~vi~gD~~~~~~~~~~~~l~ 209 (371)
..+++.++++|||-|.=.+..-..| .+++|+||.+-.+..|+++..+. . .+.++.||-....+.+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~---- 190 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL---- 190 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc----
Confidence 4578899999999988665555555 48999999999999999987642 1 468889998776554321
Q ss_pred HhhccCCCeeEEEecCC
Q 017450 210 ERRKSSSGFAKVVANIP 226 (371)
Q Consensus 210 ~~~~~~~~~d~VVaNlP 226 (371)
+ ...+.||+|-+-..
T Consensus 191 e--~~dp~fDivScQF~ 205 (389)
T KOG1975|consen 191 E--FKDPRFDIVSCQFA 205 (389)
T ss_pred c--CCCCCcceeeeeee
Confidence 1 12344888766433
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=95.33 E-value=0.05 Score=50.17 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=47.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhcc-CCC-eEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFAS-IDQ-LKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~-~~~-v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
...++||.|+|+|..|..++.. ..+|-.||..+.+++.|++.+.. .++ .++.+....++.+ ....
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P------------~~~~ 122 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP------------EEGK 122 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------------TT-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC------------CCCc
Confidence 3469999999999999877554 56899999999999999988765 223 3555555555432 2367
Q ss_pred eeEEEec
Q 017450 218 FAKVVAN 224 (371)
Q Consensus 218 ~d~VVaN 224 (371)
+|+|...
T Consensus 123 YDlIW~Q 129 (218)
T PF05891_consen 123 YDLIWIQ 129 (218)
T ss_dssp EEEEEEE
T ss_pred EeEEEeh
Confidence 9999864
No 246
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.21 E-value=0.091 Score=48.46 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~ 199 (371)
.+.++.||||--|+|+.+|.+.+ ..+++.|+++..++.|.+++...+ .+++..+|.+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~ 79 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV 79 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence 45569999999999999999974 489999999999999999998764 678888888653
No 247
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.05 E-value=0.23 Score=46.08 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=59.0
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 137 AAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
+.+.+|.+||-+|.++|..-..++.. ...|+|||.+++....+-.-.+..+|+--+.+|+..-.--. .
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~---------~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYR---------M 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGT---------T
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhh---------c
Confidence 34678999999999999999999986 35899999999877766655555579988899997532111 1
Q ss_pred cCCCeeEEEecCCCcccHHH
Q 017450 214 SSSGFAKVVANIPFNISTDV 233 (371)
Q Consensus 214 ~~~~~d~VVaNlPy~iss~i 233 (371)
.-+..|+|+++..-.-...|
T Consensus 140 lv~~VDvI~~DVaQp~Qa~I 159 (229)
T PF01269_consen 140 LVEMVDVIFQDVAQPDQARI 159 (229)
T ss_dssp TS--EEEEEEE-SSTTHHHH
T ss_pred ccccccEEEecCCChHHHHH
Confidence 12578999998764333333
No 248
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=94.91 E-value=0.047 Score=47.79 Aligned_cols=47 Identities=9% Similarity=0.181 Sum_probs=36.9
Q ss_pred EEEeCCHHHHHHHHHHhcc-----CCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 167 LAIEKDQHMVGLVRERFAS-----IDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 167 ~aIE~d~~~i~~a~~~~~~-----~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
+|+|++++|++.|+++... ..+++++++|+.++++. .+.||.|+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~------------~~~fD~v~~~~ 52 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD------------DCEFDAVTMGY 52 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC------------CCCeeEEEecc
Confidence 4899999999999876542 13799999999988652 35799998754
No 249
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.79 E-value=0.47 Score=45.71 Aligned_cols=60 Identities=18% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-C---CeEEEEeCCHHHHHHHHHHhccCC--Ce-EEEEcccccc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFASID--QL-KVLQEDFVKC 199 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~---~~V~aIE~d~~~i~~a~~~~~~~~--~v-~vi~gD~~~~ 199 (371)
..+-+||||.||.|..-.-..+. . .+|...|.++..++..++.++..+ ++ ++.++|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 45669999999999976665554 2 479999999999999999887654 55 9999999874
No 250
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.1 Score=51.32 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=57.3
Q ss_pred CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC-CeeE
Q 017450 143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS-GFAK 220 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~-~~d~ 220 (371)
-+++|+-||.|.+...+...|.+ +.++|+|+..++..+.++.. -.++++|+.++..+.. .. .+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~----------~~~~~Dv 70 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEAL----------RKSDVDV 70 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhc----------cccCCCE
Confidence 47999999999999999988876 66999999999999998863 5577788877654321 12 6899
Q ss_pred EEecCC
Q 017450 221 VVANIP 226 (371)
Q Consensus 221 VVaNlP 226 (371)
+++.+|
T Consensus 71 ligGpP 76 (328)
T COG0270 71 LIGGPP 76 (328)
T ss_pred EEeCCC
Confidence 999887
No 251
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=94.30 E-value=0.17 Score=52.58 Aligned_cols=103 Identities=24% Similarity=0.381 Sum_probs=71.0
Q ss_pred ccccCcccCCCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHHh---C---CeEEEEeCCHHHHHHHHHHhc--c
Q 017450 116 RKSLGQHYMLNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLNA---G---ATVLAIEKDQHMVGLVRERFA--S 185 (371)
Q Consensus 116 ~k~lGQ~fl~~~~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~~---~---~~V~aIE~d~~~i~~a~~~~~--~ 185 (371)
.+.-|+ |.++..++..++..+... ++..|.|.-||+|.+....... + ..+++-|....+...++.+.. .
T Consensus 191 ~t~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~ 269 (501)
T TIGR00497 191 GKSGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN 269 (501)
T ss_pred CCcCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC
Confidence 344556 888999999998887654 5578999999999977654331 2 368999999999999998742 1
Q ss_pred C--CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCcc
Q 017450 186 I--DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNI 229 (371)
Q Consensus 186 ~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~i 229 (371)
. +...+..+|-+.-+. + ....++|.|++|+||..
T Consensus 270 ~~~~t~~~~~~dtl~~~d------~----~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 270 IDYANFNIINADTLTTKE------W----ENENGFEVVVSNPPYSI 305 (501)
T ss_pred CCccccCcccCCcCCCcc------c----cccccCCEEeecCCccc
Confidence 1 133444555443210 0 11245899999999964
No 252
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.29 E-value=0.29 Score=50.43 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=58.7
Q ss_pred CEEEEEcCcccHHHHHHHHhCCe-EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh----hhHHHhh-ccCC
Q 017450 143 DIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM----LSLFERR-KSSS 216 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~~~~-V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~----~~l~~~~-~~~~ 216 (371)
-+++|+-||.|.++..+-..|.+ |.++|+|+.+.+.-+.|+...+...++.+|+.+++..+.. .+....+ ...+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~p 168 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHIP 168 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccCC
Confidence 48999999999999999888875 6799999999999888875334556677888877643110 0000000 0123
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|++++.+|
T Consensus 169 ~~DvL~gGpP 178 (467)
T PRK10458 169 DHDVLLAGFP 178 (467)
T ss_pred CCCEEEEcCC
Confidence 5799999887
No 253
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.16 E-value=0.19 Score=40.41 Aligned_cols=53 Identities=32% Similarity=0.506 Sum_probs=38.9
Q ss_pred EEEEcCcccHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHhccCCC--eEEEEccccc
Q 017450 145 VLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK 198 (371)
Q Consensus 145 VLEIG~G~G~lt~~La~~~---~~V~aIE~d~~~i~~a~~~~~~~~~--v~vi~gD~~~ 198 (371)
++|+|||+|..+ .++... ..++++|.++.++..++........ +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 444432 4899999999999986655432111 6788888776
No 254
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.11 Score=45.19 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR 202 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~ 202 (371)
-++..++.+...+..+.+|+|+|.|..-...++.| ..-+|+|+++-++.+++-..-.. +...+...|.-+.++.
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 34555667766676789999999999998888888 47999999999998877654222 2667888888877654
No 255
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=93.90 E-value=0.024 Score=51.74 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=59.2
Q ss_pred HHhcCCCcccccCcccCCCHHHHHHHHHHhcC---CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450 108 LNSKGRFPRKSLGQHYMLNSEINDQLAAAAAV---QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 108 l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~ 182 (371)
|.+-.+..--..|.-|+.+++--++++..-++ +.+.++||+|+|.|..|..|+..-.+|+|.|.+..|...+++.
T Consensus 76 ms~TdING~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 76 MSQTDINGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred hhhhccccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 44445555566778899888887777665433 2457999999999999999998777899999999999998765
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.81 E-value=0.19 Score=47.85 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCC-CCCEEEEEcCcccH--HHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCC--eEEEEccccc
Q 017450 127 SEINDQLAAAAAVQ-EGDIVLEIGPGTGS--LTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQ--LKVLQEDFVK 198 (371)
Q Consensus 127 ~~v~~~i~~~l~~~-~~~~VLEIG~G~G~--lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~--v~vi~gD~~~ 198 (371)
...+.+.+..+... .=...||||||.-. .+..+++. .++|+-||.|+-.+.+++..+...++ ..++++|+.+
T Consensus 53 R~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp HHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred HHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 34455566665544 44689999999654 45566654 67999999999999999999887766 8999999987
Q ss_pred ch
Q 017450 199 CH 200 (371)
Q Consensus 199 ~~ 200 (371)
..
T Consensus 133 p~ 134 (267)
T PF04672_consen 133 PE 134 (267)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 257
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=0.21 Score=45.06 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCCCeEEEEc-ccccchhhhhhhhHHHhhccC
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASIDQLKVLQE-DFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~g-D~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|||+||..|.-+....++ ...|.|||+-. +.....++++.+ |+.+-.... .+.+. .+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~---ki~e~-lp~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYR---KIFEA-LPN 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHH---HHHHh-CCC
Confidence 47899999999999999988876 35799999742 222236777777 776643322 22222 233
Q ss_pred CCeeEEEecCCCc
Q 017450 216 SGFAKVVANIPFN 228 (371)
Q Consensus 216 ~~~d~VVaNlPy~ 228 (371)
-..|+|++++.-+
T Consensus 135 r~VdvVlSDMapn 147 (232)
T KOG4589|consen 135 RPVDVVLSDMAPN 147 (232)
T ss_pred CcccEEEeccCCC
Confidence 5678999875433
No 258
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.60 E-value=0.27 Score=46.29 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=35.3
Q ss_pred CCEEEEEcCcccHHHHHHHHh----------CCeEEEEeCCHHHHHHHHHHhcc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVRERFAS 185 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~----------~~~V~aIE~d~~~i~~a~~~~~~ 185 (371)
+-+|+|+|+|.|.++.-+++. ..+++-||+++.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 359999999999999988763 13799999999999998888865
No 259
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=93.56 E-value=0.5 Score=45.32 Aligned_cols=59 Identities=29% Similarity=0.392 Sum_probs=38.7
Q ss_pred CCEEEEEcCcccHHHHHHHH-h---CCeEEEEeCCHHHHHHHHHHhcc-C---CCeEEEEcccccch
Q 017450 142 GDIVLEIGPGTGSLTNVLLN-A---GATVLAIEKDQHMVGLVRERFAS-I---DQLKVLQEDFVKCH 200 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~-~---~~~V~aIE~d~~~i~~a~~~~~~-~---~~v~vi~gD~~~~~ 200 (371)
+++|+=||+|.=-+|..+.. . +..|+++|+|+..++.+++-... . .+++++.+|+.+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 35999999997666655544 3 45799999999999999987762 2 37899999998764
No 260
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.39 Score=47.50 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=46.7
Q ss_pred ccCCCHHHHHH--------HHHHhc---CCCCCEEEEEcCcccHHHHHHHHh----------CCeEEEEeCCHHHHHHHH
Q 017450 122 HYMLNSEINDQ--------LAAAAA---VQEGDIVLEIGPGTGSLTNVLLNA----------GATVLAIEKDQHMVGLVR 180 (371)
Q Consensus 122 ~fl~~~~v~~~--------i~~~l~---~~~~~~VLEIG~G~G~lt~~La~~----------~~~V~aIE~d~~~i~~a~ 180 (371)
.|++.+++-.. +++... ...+-.++|||+|.|.+..-++.. ..++.-||.++++.+.=+
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 58888776443 333332 222347999999999998877752 358999999999999888
Q ss_pred HHhcc
Q 017450 181 ERFAS 185 (371)
Q Consensus 181 ~~~~~ 185 (371)
++++.
T Consensus 127 ~~L~~ 131 (370)
T COG1565 127 ETLKA 131 (370)
T ss_pred HHHhc
Confidence 88764
No 261
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=93.35 E-value=0.19 Score=48.87 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=50.9
Q ss_pred EEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~ 220 (371)
+|||+|.-.+-..+-.. +..-+++|+|+..+..|+++...++ .+.+++....+..+.+...+ .....||.
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-----~~e~~ydF 181 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-----ESEIIYDF 181 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-----CccceeeE
Confidence 68877655543333222 5678999999999999999988654 56666664433322211000 11234899
Q ss_pred EEecCCCccc
Q 017450 221 VVANIPFNIS 230 (371)
Q Consensus 221 VVaNlPy~is 230 (371)
+.+|+||.-.
T Consensus 182 cMcNPPFfe~ 191 (419)
T KOG2912|consen 182 CMCNPPFFEN 191 (419)
T ss_pred EecCCchhhc
Confidence 9999999654
No 262
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.03 E-value=0.029 Score=53.89 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcccHHHH-HHHHhCC-eEEEEeCCHHHHHHHHHHhccCC---CeEEEEcccccc
Q 017450 141 EGDIVLEIGPGTGSLTN-VLLNAGA-TVLAIEKDQHMVGLVRERFASID---QLKVLQEDFVKC 199 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~-~La~~~~-~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~~~~ 199 (371)
.+..|.|+-+|.||+|. .+...|+ .|+|+|.++..++.++.+...++ ...+++||-...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~ 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence 45789999999999999 6677765 79999999999999999987653 345666665543
No 263
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.92 E-value=0.071 Score=42.91 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=23.0
Q ss_pred EEEcCcccHHHHHHHHh---C--CeEEEEeCCHH---HHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 146 LEIGPGTGSLTNVLLNA---G--ATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~---~--~~V~aIE~d~~---~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
||||+..|.+|..+++. . .+++++|..+. .-+.+++ ..-.++++++++|..+.-. . + ..++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~-~----~-----~~~~ 69 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLP-S----L-----PDGP 69 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHH-H----H-----HH--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHH-H----c-----CCCC
Confidence 79999999999998874 2 37999999994 3333333 1112489999999976421 1 1 1256
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
+|.++-+-
T Consensus 70 ~dli~iDg 77 (106)
T PF13578_consen 70 IDLIFIDG 77 (106)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 88887554
No 264
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.89 E-value=0.31 Score=48.49 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~ 181 (371)
.+-+.|+|+|.|.|+++..|+-. |..|.|||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 35578999999999999999875 7799999999877766553
No 265
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.39 E-value=0.13 Score=46.94 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=45.5
Q ss_pred CEEEEEcCcccHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHhccC---------CCeEEEEcccccc
Q 017450 143 DIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASI---------DQLKVLQEDFVKC 199 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~--~~~V~aIE~d~~~i~~a~~~~~~~---------~~v~vi~gD~~~~ 199 (371)
-.+.|||||-|.+...|+.. ..-++|+||-....++.++++... .|+.+...++...
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 46899999999999999987 456999999888888887776532 3777887777765
No 266
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.36 E-value=0.39 Score=44.16 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCC-CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhH
Q 017450 130 NDQLAAAAAVQE-GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSL 208 (371)
Q Consensus 130 ~~~i~~~l~~~~-~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l 208 (371)
++.|++.+.-.+ +-.|-|.|||.+.++..+. .+.+|...|+-.. |-.++.+|+..+|++
T Consensus 60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------------n~~Vtacdia~vPL~------ 119 (219)
T PF05148_consen 60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------------NPRVTACDIANVPLE------ 119 (219)
T ss_dssp HHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------STTEEES-TTS-S--------
T ss_pred HHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------------CCCEEEecCccCcCC------
Confidence 577777776554 4589999999999986643 3457999997542 234778999999874
Q ss_pred HHhhccCCCeeEEEecCCC
Q 017450 209 FERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlPy 227 (371)
.+..|++|-.|-.
T Consensus 120 ------~~svDv~VfcLSL 132 (219)
T PF05148_consen 120 ------DESVDVAVFCLSL 132 (219)
T ss_dssp ------TT-EEEEEEES--
T ss_pred ------CCceeEEEEEhhh
Confidence 3668998876654
No 267
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=92.34 E-value=0.23 Score=45.82 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred cCcccccHHHHHHHHhhhc-CCCCcHHHHHHHHHhcCCCcccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHH
Q 017450 77 SSIAGVQKGAASACIVCAR-SQDDDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSL 155 (371)
Q Consensus 77 ~~i~~~~~~~r~~mv~~~~-~~~~~~~~~~~~l~~~~~~~~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~l 155 (371)
+.+||...++++..+-.-. |..++...+.+.+.......+..- ..-++|||||=+...
T Consensus 7 ~~~GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~---------------------~~lrlLEVGals~~N 65 (219)
T PF11968_consen 7 EALGGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGR---------------------PKLRLLEVGALSTDN 65 (219)
T ss_pred HHccCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhcccccccc---------------------ccceEEeecccCCCC
Confidence 4567777777666553333 556677777777766444322211 125899999864442
Q ss_pred HHHHHHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 156 TNVLLNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 156 t~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
... ..+ -.|+.||+++. .-.+.+.|+++.+++. .+.+.||+|+..+-.
T Consensus 66 ~~s--~~~~fdvt~IDLns~-------------~~~I~qqDFm~rplp~---------~~~e~FdvIs~SLVL 114 (219)
T PF11968_consen 66 ACS--TSGWFDVTRIDLNSQ-------------HPGILQQDFMERPLPK---------NESEKFDVISLSLVL 114 (219)
T ss_pred ccc--ccCceeeEEeecCCC-------------CCCceeeccccCCCCC---------CcccceeEEEEEEEE
Confidence 221 222 37999998763 3358899999987642 134679999877654
No 268
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=92.30 E-value=0.099 Score=52.51 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=54.2
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---C-CeEEEEcccccc
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASI---D-QLKVLQEDFVKC 199 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~-~v~vi~gD~~~~ 199 (371)
.++|+.|.|+-||.|-++..++..++.|++-|.++++++.++.++.-+ + +++++..|+.++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 457899999999999999999999999999999999999999998754 2 588998888664
No 269
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.20 E-value=0.31 Score=46.58 Aligned_cols=118 Identities=12% Similarity=0.196 Sum_probs=79.3
Q ss_pred HHHHHHHHHhc---CCCcccccCcccCCCHHHHHHHHHHh--cCCCCCEEEEEcCcccHHH-HHHHH--hCCeEEEEeCC
Q 017450 101 YHATIKALNSK---GRFPRKSLGQHYMLNSEINDQLAAAA--AVQEGDIVLEIGPGTGSLT-NVLLN--AGATVLAIEKD 172 (371)
Q Consensus 101 ~~~~~~~l~~~---~~~~~k~lGQ~fl~~~~v~~~i~~~l--~~~~~~~VLEIG~G~G~lt-~~La~--~~~~V~aIE~d 172 (371)
+.++++.+++. ...+...+.|-|.++...+.++.-.- +...|+.|+=+| .--|| ++++- ...+|..||+|
T Consensus 107 f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDID 184 (354)
T COG1568 107 FKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDID 184 (354)
T ss_pred HHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEech
Confidence 44555544433 34567889999999988877655433 233677899998 33333 33332 35689999999
Q ss_pred HHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCCccc
Q 017450 173 QHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNIS 230 (371)
Q Consensus 173 ~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~is 230 (371)
++++....+..+..+ |++.+.-|..+--.++ -...||+++.++|+.+.
T Consensus 185 ERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~----------~~~kFDvfiTDPpeTi~ 234 (354)
T COG1568 185 ERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED----------LKRKFDVFITDPPETIK 234 (354)
T ss_pred HHHHHHHHHHHHHhCccchhheeehhcccChHH----------HHhhCCeeecCchhhHH
Confidence 999998887776554 6877777766532221 12579999999998664
No 270
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.05 E-value=0.22 Score=40.86 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhcC----CCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCC
Q 017450 126 NSEINDQLAAAAAV----QEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKD 172 (371)
Q Consensus 126 ~~~v~~~i~~~l~~----~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d 172 (371)
|-.+++.++.+-.. .+...-+|||||.|-|...|...|.+=.|+|.-
T Consensus 39 DlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 39 DLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 33556666665432 234579999999999999999999888888853
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.79 E-value=0.39 Score=43.93 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=61.7
Q ss_pred hcCCCCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 137 AAVQEGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 137 l~~~~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+.+.+|++||=+|+.+|....+++.- + ..++|||.+++....+-....+.+|+--+.+|+..-.--. .+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~---~~------ 142 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR---HL------ 142 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh---hh------
Confidence 34678999999999999999999986 3 5799999999988877777776678888899987532111 11
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
-+..|+|+.+..
T Consensus 143 Ve~VDviy~DVA 154 (231)
T COG1889 143 VEKVDVIYQDVA 154 (231)
T ss_pred cccccEEEEecC
Confidence 245788887654
No 272
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.68 E-value=0.39 Score=44.32 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCcccHHHHHHHHh-C---CeEEEEeCCHHHHHHHHHHhc
Q 017450 140 QEGDIVLEIGPGTGSLTNVLLNA-G---ATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~La~~-~---~~V~aIE~d~~~i~~a~~~~~ 184 (371)
..+-++.|.-||.|++...+.-. + ..|+|-|+|+++++.|++|+.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 34559999999999987665542 2 479999999999999988863
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.67 E-value=0.33 Score=49.94 Aligned_cols=56 Identities=25% Similarity=0.378 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcC--CCC--CEEEEEcCcccHHHHHHHHhCCeEEEEe---CCHHHHHHHHHH
Q 017450 127 SEINDQLAAAAAV--QEG--DIVLEIGPGTGSLTNVLLNAGATVLAIE---KDQHMVGLVRER 182 (371)
Q Consensus 127 ~~v~~~i~~~l~~--~~~--~~VLEIG~G~G~lt~~La~~~~~V~aIE---~d~~~i~~a~~~ 182 (371)
...++.|.+.+.. ..+ ..+||||||+|.++.+|.+++..+.++- ..+..++.|.++
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR 161 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER 161 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc
Confidence 3566677777665 333 4899999999999999999876544443 334566666554
No 274
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=91.60 E-value=0.8 Score=41.58 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=63.8
Q ss_pred ccccCcccCCCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHhccCCCe
Q 017450 116 RKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERFASIDQL 189 (371)
Q Consensus 116 ~k~lGQ~fl~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~----~--~~V~aIE~d~~~i~~a~~~~~~~~~v 189 (371)
..+.|...+..+.-.-.+-+.+-..+++.|+|+|.-.|.++...|.. | .+|+++|+|-.-...+... .+.+
T Consensus 44 ~twmG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i 120 (237)
T COG3510 44 YTWMGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDI 120 (237)
T ss_pred eeEecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCe
Confidence 46778877777777666666666667889999999999999888863 5 5899999996654433322 3589
Q ss_pred EEEEcccccchhhh
Q 017450 190 KVLQEDFVKCHIRS 203 (371)
Q Consensus 190 ~vi~gD~~~~~~~~ 203 (371)
.+++|+-.+....+
T Consensus 121 ~f~egss~dpai~e 134 (237)
T COG3510 121 LFIEGSSTDPAIAE 134 (237)
T ss_pred EEEeCCCCCHHHHH
Confidence 99999988765443
No 275
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=91.41 E-value=0.51 Score=47.51 Aligned_cols=86 Identities=14% Similarity=0.213 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhh
Q 017450 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 133 i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~ 207 (371)
.+..+.+++|.+|||.-+..|.=|.++|.. -.-|+|.|.+...+..++.++...+ |..+.+.|..+++-..
T Consensus 233 pv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~---- 308 (460)
T KOG1122|consen 233 PVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE---- 308 (460)
T ss_pred eeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc----
Confidence 445567889999999999999999999885 3479999999999999999988765 6677888888764321
Q ss_pred HHHhhccCCCeeEEEecCCCc
Q 017450 208 LFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 208 l~~~~~~~~~~d~VVaNlPy~ 228 (371)
-++.||.|.-.-|=.
T Consensus 309 ------~~~~fDRVLLDAPCS 323 (460)
T KOG1122|consen 309 ------FPGSFDRVLLDAPCS 323 (460)
T ss_pred ------cCcccceeeecCCCC
Confidence 124799999887754
No 276
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.36 E-value=0.94 Score=38.29 Aligned_cols=84 Identities=13% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhh
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
+++.+.... ..++|+|||-|.=. .+..|.+.|..|+++|+++. .+. ..+.++.-|+.+-++.
T Consensus 4 ~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~------~g~~~v~DDif~P~l~----- 66 (127)
T PF03686_consen 4 FAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP------EGVNFVVDDIFNPNLE----- 66 (127)
T ss_dssp HHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------------STTEE---SSS--HH-----
T ss_pred HHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc------cCcceeeecccCCCHH-----
Confidence 344455443 34599999988654 56677778999999999998 111 2677888998875432
Q ss_pred HHHhhccCCCeeEEEe-cCCCcccHHHHH
Q 017450 208 LFERRKSSSGFAKVVA-NIPFNISTDVIK 235 (371)
Q Consensus 208 l~~~~~~~~~~d~VVa-NlPy~iss~il~ 235 (371)
+ ....|.|.| ++|-.+..+++.
T Consensus 67 i------Y~~a~lIYSiRPP~El~~~il~ 89 (127)
T PF03686_consen 67 I------YEGADLIYSIRPPPELQPPILE 89 (127)
T ss_dssp H------HTTEEEEEEES--TTSHHHHHH
T ss_pred H------hcCCcEEEEeCCChHHhHHHHH
Confidence 1 135788887 677666666653
No 277
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.28 E-value=3.2 Score=40.11 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.|+.||==|.|.|. ++..+|++|++++..|+++.......+.+++.+.+....+|..+.+.-....+.++ .+-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk--~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVK--KEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHH--HhcCC
Confidence 57889999988885 56677778999999999999888888877766678888899887543222222222 23467
Q ss_pred eeEEEecC-------CCcccHHHHHHhccC
Q 017450 218 FAKVVANI-------PFNISTDVIKQLLPM 240 (371)
Q Consensus 218 ~d~VVaNl-------Py~iss~il~~Ll~~ 240 (371)
.+++|-|- -++.+.+.+++.++-
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~v 144 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDV 144 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHHHHHH
Confidence 88888772 236667777766553
No 278
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.58 E-value=0.53 Score=42.88 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCCEEEEEcCcccH----HHHHHHHh-----C--CeEEEEeCCHHHHHHHHH
Q 017450 141 EGDIVLEIGPGTGS----LTNVLLNA-----G--ATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 141 ~~~~VLEIG~G~G~----lt~~La~~-----~--~~V~aIE~d~~~i~~a~~ 181 (371)
+.-+|+..||++|. ++..+.+. + .+|+|.|+|+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 34599999999997 44444441 2 389999999999999875
No 279
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.57 E-value=0.69 Score=44.24 Aligned_cols=38 Identities=26% Similarity=0.167 Sum_probs=34.4
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHH
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGL 178 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~ 178 (371)
.+.+||=.|||.|.|+..+|..|..+.|.|.+-.|+-.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~ 93 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA 93 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH
Confidence 45699999999999999999999999999999988643
No 280
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.33 E-value=1.1 Score=36.24 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHh---C-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 150 PGTGSLTNVLLNA---G-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 150 ~G~G~lt~~La~~---~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
||.|.++..+++. + .+|+.+|.|++.++.+++. .+.++.||+.+...-.. ......+.++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~~l~~--------a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPEVLER--------AGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHHHHHH--------TTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhhHHhh--------cCccccCEEEEcc
Confidence 5667777777763 4 4899999999998888765 47899999988643211 1224566666544
Q ss_pred C
Q 017450 226 P 226 (371)
Q Consensus 226 P 226 (371)
+
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 281
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.18 E-value=1.9 Score=39.98 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhh
Q 017450 130 NDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLS 207 (371)
Q Consensus 130 ~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~ 207 (371)
.....+.+. .+|.+||+||.|.|.....+.+.. .+-+-||..++..+..+..--. ..||.++.|-..+.-..
T Consensus 91 Mha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~----- 164 (271)
T KOG1709|consen 91 MHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT----- 164 (271)
T ss_pred HHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc-----
Confidence 333333333 567899999999999998888774 4667899999999998876432 24888888776654211
Q ss_pred HHHhhccCCCeeEEE
Q 017450 208 LFERRKSSSGFAKVV 222 (371)
Q Consensus 208 l~~~~~~~~~~d~VV 222 (371)
...+.||-|.
T Consensus 165 -----L~d~~FDGI~ 174 (271)
T KOG1709|consen 165 -----LPDKHFDGIY 174 (271)
T ss_pred -----ccccCcceeE
Confidence 1235588877
No 282
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=89.75 E-value=0.54 Score=44.57 Aligned_cols=72 Identities=10% Similarity=0.136 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCC-CEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh
Q 017450 128 EINDQLAAAAAVQEG-DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 128 ~v~~~i~~~l~~~~~-~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~ 206 (371)
+=++.|+..+...++ -.|-|+|||.+-++. ..-.+|...|+-.. |-+++.+|+.+++++
T Consensus 166 nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-------------~~~V~~cDm~~vPl~---- 225 (325)
T KOG3045|consen 166 NPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV-------------NERVIACDMRNVPLE---- 225 (325)
T ss_pred ChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeecC-------------CCceeeccccCCcCc----
Confidence 346778888776654 478899999998765 23457888886422 556888999998864
Q ss_pred hHHHhhccCCCeeEEEecCCC
Q 017450 207 SLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNlPy 227 (371)
.+..|++|..|-.
T Consensus 226 --------d~svDvaV~CLSL 238 (325)
T KOG3045|consen 226 --------DESVDVAVFCLSL 238 (325)
T ss_pred --------cCcccEEEeeHhh
Confidence 3668888865543
No 283
>PRK12829 short chain dehydrogenase; Provisional
Probab=89.58 E-value=4.2 Score=37.50 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 140 QEGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+++++|=+|++ |.++..+ +++|.+|++++.++...+...+..... ++.++.+|+.+..--....+... ...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~ 84 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA-KVTATVADVADPAQVERVFDTAV--ERF 84 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC-ceEEEEccCCCHHHHHHHHHHHH--HHh
Confidence 467899988875 5555544 445889999999987766555544322 56888999886542111111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
++.|.||.|..
T Consensus 85 ~~~d~vi~~ag 95 (264)
T PRK12829 85 GGLDVLVNNAG 95 (264)
T ss_pred CCCCEEEECCC
Confidence 45788887754
No 284
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=89.57 E-value=1.3 Score=42.90 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=41.1
Q ss_pred ccCCCHHHHHHHHHHhcCC-CCCEEEEEcCcccH----HHHHHHHh------CCeEEEEeCCHHHHHHHHHH
Q 017450 122 HYMLNSEINDQLAAAAAVQ-EGDIVLEIGPGTGS----LTNVLLNA------GATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 122 ~fl~~~~v~~~i~~~l~~~-~~~~VLEIG~G~G~----lt~~La~~------~~~V~aIE~d~~~i~~a~~~ 182 (371)
.|.-++...+.+...+... ..-+|+..||+||- ++..+.+. ..+|+|+|+|+.+++.|++-
T Consensus 95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 3555555555555544222 23599999999997 33444442 24799999999999999865
No 285
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.11 E-value=1.5 Score=41.74 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS 185 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~ 185 (371)
-+..+..+++.. ...+++.|||.-+|+|.........+.+.+++|++++.++.+.+++..
T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHh
Confidence 345666777776 667899999999999998887777789999999999999999999864
No 286
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.73 E-value=0.69 Score=46.23 Aligned_cols=78 Identities=12% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHH----------hcc-CCCeEE
Q 017450 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRER----------FAS-IDQLKV 191 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~----------~~~-~~~v~v 191 (371)
+.++-...+++.+++.+++.-.|+|.|.|.+....+..+ ..=+|+|+.....+.+..+ +.. .+.++.
T Consensus 176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~ 255 (419)
T KOG3924|consen 176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET 255 (419)
T ss_pred hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence 346677889999999999999999999999988888763 3678999875554444332 111 135789
Q ss_pred EEcccccchhh
Q 017450 192 LQEDFVKCHIR 202 (371)
Q Consensus 192 i~gD~~~~~~~ 202 (371)
++|++..-...
T Consensus 256 i~gsf~~~~~v 266 (419)
T KOG3924|consen 256 IHGSFLDPKRV 266 (419)
T ss_pred cccccCCHHHH
Confidence 99999886543
No 287
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=88.69 E-value=1 Score=44.37 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=46.7
Q ss_pred CCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~ 198 (371)
-+..+|+|.|+|..+..+...-.+|-+|+.|...+-.+...+. +.|+-+.||..+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq 232 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQ 232 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceecccccc
Confidence 3799999999999999999876689999999999988888874 357777888765
No 288
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.60 E-value=1.6 Score=38.54 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=62.7
Q ss_pred cCcccCCCHHHHHHHHHHhcC--CCCCEEEEEcCcccHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcc
Q 017450 119 LGQHYMLNSEINDQLAAAAAV--QEGDIVLEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQED 195 (371)
Q Consensus 119 lGQ~fl~~~~v~~~i~~~l~~--~~~~~VLEIG~G~G~lt~~La-~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD 195 (371)
+.| |.-+.+.++.+++.+.- .++.+|+=|||=+-+-...-. ..+.+++..|+|.+...... + +++.-|
T Consensus 2 lsQ-fwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~-------~-~F~fyD 72 (162)
T PF10237_consen 2 LSQ-FWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG-------D-EFVFYD 72 (162)
T ss_pred ccc-cccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC-------c-ceEECC
Confidence 346 66677777777776653 456799999997766554431 13568999999988755321 3 355555
Q ss_pred cccchhhhhhhhHHHhhccCCCeeEEEecCCCcccHHHHH
Q 017450 196 FVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIK 235 (371)
Q Consensus 196 ~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy~iss~il~ 235 (371)
..+-. .+.+. -.+.+|+||.+||| ++.+++.
T Consensus 73 ~~~p~------~~~~~--l~~~~d~vv~DPPF-l~~ec~~ 103 (162)
T PF10237_consen 73 YNEPE------ELPEE--LKGKFDVVVIDPPF-LSEECLT 103 (162)
T ss_pred CCChh------hhhhh--cCCCceEEEECCCC-CCHHHHH
Confidence 44311 11111 13689999999999 6666653
No 289
>PRK05867 short chain dehydrogenase; Provisional
Probab=88.37 E-value=3.8 Score=37.80 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.+++-.+.+.+.+... +++..+.+|+.+..--. ....+.+ ..
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA---EL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 46789999976553 45555667899999999988777666655433 36778888987643211 1111111 12
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 85 g~id~lv~~ag 95 (253)
T PRK05867 85 GGIDIAVCNAG 95 (253)
T ss_pred CCCCEEEECCC
Confidence 56889988753
No 290
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.26 E-value=1.3 Score=43.87 Aligned_cols=90 Identities=23% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHhcCCCCCEEEEEcCcccHHHHHHHHhCC------eEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhh
Q 017450 135 AAAAVQEGDIVLEIGPGTGSLTNVLLNAGA------TVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~G~lt~~La~~~~------~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~ 206 (371)
-.++++++++|||.-+..|.-|..|.+... .|+|=|.|...+..+....... +++.+...|+...+-...-
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~- 227 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK- 227 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-
Confidence 455778999999999999999999988632 7999999999888888777543 3667777776655422100
Q ss_pred hHHHhhccCCCeeEEEecCCC
Q 017450 207 SLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNlPy 227 (371)
++.. .....||.|..+.|=
T Consensus 228 ~~~~--~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 228 DGND--KEQLKFDRVLVDVPC 246 (375)
T ss_pred cCch--hhhhhcceeEEeccc
Confidence 0000 123569999998884
No 291
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=88.09 E-value=2.7 Score=39.95 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhC-------CeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccch
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG-------ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCH 200 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~-------~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~ 200 (371)
..|.+.-.+.+...++|.|||.|.|+.++++.- ..++.||....-. ..-..+... +.++=+..|+.+++
T Consensus 8 ~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 8 GNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccc
Confidence 333333334566799999999999999999852 4789999865333 222222222 25666788998888
Q ss_pred hhh
Q 017450 201 IRS 203 (371)
Q Consensus 201 ~~~ 203 (371)
+..
T Consensus 87 l~~ 89 (259)
T PF05206_consen 87 LSK 89 (259)
T ss_pred hhh
Confidence 754
No 292
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=87.84 E-value=4.1 Score=37.77 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=50.2
Q ss_pred EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCee
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGFA 219 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~d 219 (371)
+||=.|.+.|. ++..+++.|++|+.++.++.-.+.+.+.+...+++.++.+|+.+...-. ......+ ..+..|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~---~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWE---LLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHH---hcCCCC
Confidence 46777765443 4455556789999999998877766666554457788889987643211 1111111 235689
Q ss_pred EEEecCC
Q 017450 220 KVVANIP 226 (371)
Q Consensus 220 ~VVaNlP 226 (371)
++|.|.-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 9987753
No 293
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=87.70 E-value=2.5 Score=43.38 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=51.7
Q ss_pred CCC-EEEEEcCcccHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHh-ccCCCeEEEEcccccchhhh
Q 017450 141 EGD-IVLEIGPGTGSLTNVLLNAGA-TVLAIEKDQHMVGLVRERF-ASIDQLKVLQEDFVKCHIRS 203 (371)
Q Consensus 141 ~~~-~VLEIG~G~G~lt~~La~~~~-~V~aIE~d~~~i~~a~~~~-~~~~~v~vi~gD~~~~~~~~ 203 (371)
+-+ ++|.+|||.-.++..+-+-|. .|+.+|+|+-.++...... ...+-.++...|+..+.+++
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fed 112 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFED 112 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCC
Confidence 445 899999999999988888875 6999999999998777665 34457899999999988753
No 294
>PRK06172 short chain dehydrogenase; Provisional
Probab=87.69 E-value=4.8 Score=37.02 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~ 215 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+..-- .......+ ..
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~ 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIA---AY 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---Hh
Confidence 46789999875433 33445556889999999987666555554433 3688889998774321 11111111 12
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
++.|.+|.|.-
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 295
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.49 E-value=3.2 Score=41.80 Aligned_cols=89 Identities=20% Similarity=0.312 Sum_probs=61.8
Q ss_pred CEEEEEcCcc-cHHHHHH-HHhC-CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 143 DIVLEIGPGT-GSLTNVL-LNAG-ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 143 ~~VLEIG~G~-G~lt~~L-a~~~-~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
.+||=||||. |...... ++.+ .+|+..|++.+-++.+..... ++++.+.-|+.+.+-. .+++ ..+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al---~~li------~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDAL---VALI------KDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHH---HHHH------hcCC
Confidence 4789999963 3333333 4445 699999999888887776643 2788999999886421 1222 2359
Q ss_pred EEEecCCCcccHHHHHHhccCCC
Q 017450 220 KVVANIPFNISTDVIKQLLPMGD 242 (371)
Q Consensus 220 ~VVaNlPy~iss~il~~Ll~~g~ 242 (371)
+|+.-+|++....+++...+.|-
T Consensus 71 ~VIn~~p~~~~~~i~ka~i~~gv 93 (389)
T COG1748 71 LVINAAPPFVDLTILKACIKTGV 93 (389)
T ss_pred EEEEeCCchhhHHHHHHHHHhCC
Confidence 99999999888888776665543
No 296
>PRK08339 short chain dehydrogenase; Provisional
Probab=87.39 E-value=5.2 Score=37.38 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|++|+.++++++-.+.+.+.+... .++.++.+|+.+..--+. +++.....
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~---~~~~~~~~ 83 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLER---TVKELKNI 83 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHH---HHHHHHhh
Confidence 46788888876554 55566667999999999987766665554322 368888999887542211 21111122
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 5678888774
No 297
>PRK07024 short chain dehydrogenase; Provisional
Probab=87.35 E-value=5.4 Score=36.90 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=49.0
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~~~ 218 (371)
++||=.|++.|. ++..|++.|.+|+.++.+++..+.+.+.+...+++.++.+|+.+...- +....+.+ ..+..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~g~i 79 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIA---AHGLP 79 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHH---hCCCC
Confidence 467778865433 344455568899999999877766555543323688889998774321 11111111 23457
Q ss_pred eEEEecC
Q 017450 219 AKVVANI 225 (371)
Q Consensus 219 d~VVaNl 225 (371)
|++|.|.
T Consensus 80 d~lv~~a 86 (257)
T PRK07024 80 DVVIANA 86 (257)
T ss_pred CEEEECC
Confidence 8888774
No 298
>PLN02253 xanthoxin dehydrogenase
Probab=87.34 E-value=5.2 Score=37.51 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++ |.++. .|++.|.+|+.++.+++..+.+.+.+....++.++.+|..+...-+...+... ...+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~~g 93 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTV--DKFG 93 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 46788888854 44444 44556899999999887666555554333468889999987543211111111 1224
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 94 ~id~li~~A 102 (280)
T PLN02253 94 TLDIMVNNA 102 (280)
T ss_pred CCCEEEECC
Confidence 678888764
No 299
>PRK07063 short chain dehydrogenase; Provisional
Probab=87.07 E-value=5.5 Score=36.82 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~-~~~~~l~~~~~ 213 (371)
.+++||=.|++.|. ++..|++.|++|+.++.+++-.+.+.+.+.. ..++.++.+|..+..-- .....+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--- 82 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE--- 82 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH---
Confidence 46789988876443 4455566789999999998877766655543 23678888998764321 11111111
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|.+|.|.
T Consensus 83 ~~g~id~li~~a 94 (260)
T PRK07063 83 AFGPLDVLVNNA 94 (260)
T ss_pred HhCCCcEEEECC
Confidence 225688888774
No 300
>PRK07454 short chain dehydrogenase; Provisional
Probab=86.87 E-value=7.1 Score=35.56 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
..+++|=.|+ +|.++ ..++++|.+|++++.++.-.+.+.+.+... .++.++.+|+.+.+.-....+.+. ...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELL--EQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4567888885 45444 444556889999999987665555544332 378889999987542211111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 45788887753
No 301
>PRK06194 hypothetical protein; Provisional
Probab=86.77 E-value=5.6 Score=37.37 Aligned_cols=83 Identities=10% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~ 215 (371)
.+++||=.|.+.|. ++..|++.|.+|+.++.+.+..+.+.+.+... .++.++.+|+.+...- .....+.+ ..
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALE---RF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence 35688877764332 34445556899999999877665554444332 3678899998765321 11111111 12
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.||.|.-
T Consensus 82 g~id~vi~~Ag 92 (287)
T PRK06194 82 GAVHLLFNNAG 92 (287)
T ss_pred CCCCEEEECCC
Confidence 45788888754
No 302
>PRK05866 short chain dehydrogenase; Provisional
Probab=86.54 E-value=5.9 Score=37.85 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=51.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++.|. ++..+++.|.+|++++++++..+.+.+.+... +.+.++.+|+.+...-....+.+. ...+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~--~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVE--KRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 45789988875443 34445556889999999987766665554332 367788899886542211111111 1224
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 678888775
No 303
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.50 E-value=1.9 Score=41.31 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=31.1
Q ss_pred CCEEEEEcCcccH----HHHHHHHhC-------CeEEEEeCCHHHHHHHHH
Q 017450 142 GDIVLEIGPGTGS----LTNVLLNAG-------ATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 142 ~~~VLEIG~G~G~----lt~~La~~~-------~~V~aIE~d~~~i~~a~~ 181 (371)
.-+|+.+||+||- ++..|.+.. .+|+|.|+|...++.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4599999999996 344444432 489999999999998874
No 304
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=86.46 E-value=6 Score=36.67 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~~ 216 (371)
+++++|=.|++.|. ++..+++.|++|+.++.+++.++.+.+... .++.++.+|..+...-... ....+ ..+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG--DHVLVVEGDVTSYADNQRAVDQTVD---AFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHH---hcC
Confidence 46789999875443 344555668999999999877766555442 2677888998775422111 11111 235
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 80 ~id~li~~ag 89 (263)
T PRK06200 80 KLDCFVGNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6889998754
No 305
>PRK09072 short chain dehydrogenase; Provisional
Probab=86.28 E-value=7 Score=36.24 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++.+||=.|++.|. ++..++++|.+|+++++++.-.+.+...+...+++.++.+|..+..--....+... ..+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAR---EMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH---hcCC
Confidence 45678888876433 45556667899999999988776665554333478888999877542211111111 1245
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|..+
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7888877543
No 306
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=86.22 E-value=7 Score=35.97 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=50.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhh-ccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~ 215 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|..+..--. .+++.. ...
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVA---AAFARIDAEH 86 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHH---HHHHHHHHhc
Confidence 57789988864332 33344556899999999987665555544433 36888899987643211 111111 122
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
++.|.+|.|.-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 46788887754
No 307
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=86.16 E-value=7.1 Score=36.00 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|.+|+.+++++... .+.+.+.. ..++.++.+|+.+...- .....+.+ ..
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 82 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVH-EVAAELRAAGGEALALTADLETYAGAQAAMAAAVE---AF 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHH-HHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH---Hc
Confidence 46788888875443 4555566789999999986533 33333322 23677888998774321 11111111 23
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 5688998875
No 308
>PRK08589 short chain dehydrogenase; Validated
Probab=86.06 E-value=7 Score=36.63 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|++|+.++.++. .+.+.+.+... .++..+.+|+.+..--. ....+.+ ..
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEA-VSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE---QF 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH-HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH---Hc
Confidence 46788888876553 44556667999999999944 33333333322 36888889987643211 1111111 23
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 81 g~id~li~~Ag 91 (272)
T PRK08589 81 GRVDVLFNNAG 91 (272)
T ss_pred CCcCEEEECCC
Confidence 56789998753
No 309
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.02 E-value=6.3 Score=36.28 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSSS 216 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~ 216 (371)
++++|=.|++.|. ++..+++.|.+|++++.++...+.+.+.+... +++.++.+|..+...- .......+ ..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDE---KFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence 3578878876543 44455566889999999987666665554432 3788889998764321 11111111 124
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 578888774
No 310
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.96 E-value=5.5 Score=39.37 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=38.6
Q ss_pred hcCCCCCEEEEEcCc-ccHHHHHHHH-hCCeEEEEeCCHHHHHHHHHH
Q 017450 137 AAVQEGDIVLEIGPG-TGSLTNVLLN-AGATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 137 l~~~~~~~VLEIG~G-~G~lt~~La~-~~~~V~aIE~d~~~i~~a~~~ 182 (371)
....+|++|+=+|+| .|.++..+|+ .+++|+++|++++-.+.|++.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 566789999988877 5567888888 489999999999999988876
No 311
>PRK06139 short chain dehydrogenase; Provisional
Probab=85.92 E-value=6 Score=38.74 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=52.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++.|. ++..+++.|++|+.++.+++..+.+.+.+...+ ++.++..|+.+..--+...+.+. ...+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA--SFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH--HhcC
Confidence 46788888875443 445566679999999999887776666554433 67778888876432111111111 1225
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 312
>PRK07478 short chain dehydrogenase; Provisional
Probab=85.80 E-value=7.4 Score=35.79 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.++.-.+.+.+.+... +++.++.+|+.+.+--.. ...+.+ ..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVE---RF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---hc
Confidence 45688888876443 44555667899999999987766665555433 367888899876542211 111111 22
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 82 ~~id~li~~ag 92 (254)
T PRK07478 82 GGLDIAFNNAG 92 (254)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 313
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.61 E-value=7.6 Score=35.37 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCC
Q 017450 141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~ 216 (371)
.+.+||=+|++. |. ++..|+++|.+|++++.++.-.+.+...+....++.++.+|+.+...-.... .... ..+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 80 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALE---RFG 80 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---HhC
Confidence 356788888643 33 4455566688999999998766655555433236788999988754321111 1111 224
Q ss_pred CeeEEEecCCC
Q 017450 217 GFAKVVANIPF 227 (371)
Q Consensus 217 ~~d~VVaNlPy 227 (371)
..|.||.|..+
T Consensus 81 ~~d~vi~~ag~ 91 (251)
T PRK07231 81 SVDILVNNAGT 91 (251)
T ss_pred CCCEEEECCCC
Confidence 67889887543
No 314
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=85.60 E-value=1.6 Score=41.09 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=48.7
Q ss_pred EEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
|..-||+-.++..+.+...+.+.+|+.+.-.+.+++++....++++++.|..+.-... + .+.+.--+|+-++
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~~v~v~~~DG~~~l~al-----l---PP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDRRVRVHHRDGYEGLKAL-----L---PPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS-EEEE-S-HHHHHHHH---------S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCCccEEEeCchhhhhhhh-----C---CCCCCCeEEEECC
Confidence 7899999999999998888999999999999999999987679999999998753221 1 2334566888899
Q ss_pred CCcccHH
Q 017450 226 PFNISTD 232 (371)
Q Consensus 226 Py~iss~ 232 (371)
||...++
T Consensus 134 pYE~~~d 140 (245)
T PF04378_consen 134 PYEQKDD 140 (245)
T ss_dssp ---STTH
T ss_pred CCCCchH
Confidence 9988764
No 315
>PRK07890 short chain dehydrogenase; Provisional
Probab=85.58 E-value=7.3 Score=35.75 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~ 215 (371)
.+++||=.|++.|. ++..|+++|.+|+.+++++.-.+.+.+.+... .++..+..|+.+...-.... ...+ ..
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE---RF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH---Hc
Confidence 46788888865443 34455567899999999987666665554432 36788899987643211111 1111 12
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4578888775
No 316
>PRK08226 short chain dehydrogenase; Provisional
Probab=85.37 E-value=7.6 Score=35.88 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=48.4
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|+. |.++.. +++.|.+|+.++.++...+.+.+......++.++.+|+.+..--+...+.+. ...+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 81 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAK--EKEG 81 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46788888875 444444 4456889999999886544443332222367788899876432211111111 1234
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 82 ~id~vi~~ag 91 (263)
T PRK08226 82 RIDILVNNAG 91 (263)
T ss_pred CCCEEEECCC
Confidence 5788887643
No 317
>PRK07035 short chain dehydrogenase; Provisional
Probab=85.34 E-value=7.6 Score=35.60 Aligned_cols=83 Identities=17% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~ 215 (371)
.+++||=.|++.|. ++..|++.|.+|+.++.++.-.+.+.+.+... .++.++..|..+..--+ ......+ ..
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE---RH 83 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence 45788889977654 44555666899999999977666655555433 35777888887654211 1111111 12
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 45788887654
No 318
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.33 E-value=7.9 Score=36.91 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~ 216 (371)
.+++||=.|++.|. ++..+++.|++|+.++.+++-++.+.+.+.....+..+.+|+.+..--. ....+.+ ..+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~---~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVE---RFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHH---HcC
Confidence 56789988865543 3445555689999999998877666555543224555668887643211 1111111 225
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 85 ~id~vI~nAG 94 (296)
T PRK05872 85 GIDVVVANAG 94 (296)
T ss_pred CCCEEEECCC
Confidence 6899998753
No 319
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.09 E-value=8.4 Score=36.34 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.++.-.+.+.+.+...+ ++.++.+|+.+..--....+... ...+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAF--RLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH--HHcC
Confidence 46788888876543 344455568899999999876665555544332 57788899877542111111111 1224
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|--
T Consensus 83 ~id~li~nAg 92 (275)
T PRK05876 83 HVDVVFSNAG 92 (275)
T ss_pred CCCEEEECCC
Confidence 6788888753
No 320
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.94 E-value=8.8 Score=34.92 Aligned_cols=82 Identities=11% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~ 214 (371)
+++++|=+|++ |.++.. +++.|.+|+.++.++.-.+.+.+.+... .++.++..|..+...- +....+.+ .
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 79 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAE---D 79 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---H
Confidence 46789988863 333333 4456889999999987666555554432 3678888998764321 11111111 1
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
.+..|.||.|.-
T Consensus 80 ~~~id~vi~~ag 91 (253)
T PRK08217 80 FGQLNGLINNAG 91 (253)
T ss_pred cCCCCEEEECCC
Confidence 245788888754
No 321
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.72 E-value=7.9 Score=37.83 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=52.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+...-+...+... ...+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~--~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAE--EELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH--HHCC
Confidence 45688888865443 33445567899999999988776666555433 378888999877542211111111 1235
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|++|.|.-
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6888887754
No 322
>PRK06138 short chain dehydrogenase; Provisional
Probab=84.66 E-value=8.9 Score=34.99 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=50.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~ 216 (371)
+++++|=.|+..|. ++..|++.|++|+++..+.+......+......++.++.+|+.+...-. ....+.+ ..+
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~---~~~ 80 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAA---RWG 80 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---HcC
Confidence 45688889885332 3344555688999999987766555544432236788999987653211 1111111 124
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.||.|..
T Consensus 81 ~id~vi~~ag 90 (252)
T PRK06138 81 RLDVLVNNAG 90 (252)
T ss_pred CCCEEEECCC
Confidence 6788887754
No 323
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.65 E-value=6.7 Score=36.47 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=48.2
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|.+ .|. ++..+++.|++|+.++++++..+.+.+.....+...++.+|+.+..--+...+.+. ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIA--EEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHH--HHc
Confidence 46789999975 443 45556667899999998865433333322222345567788876542221111111 122
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 5689999885
No 324
>PRK08643 acetoin reductase; Validated
Probab=84.48 E-value=8.4 Score=35.43 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=50.3
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++++|=+|+..|. ++..+++.|.+|+.++.+++..+.+...+... .++.++.+|+.+..--....+... ...+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 79 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVV--DTFGD 79 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH--HHcCC
Confidence 4577877755442 33445556889999999987766665555432 367788899877542111111111 12246
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|..+
T Consensus 80 id~vi~~ag~ 89 (256)
T PRK08643 80 LNVVVNNAGV 89 (256)
T ss_pred CCEEEECCCC
Confidence 7888887643
No 325
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.38 E-value=9.1 Score=36.92 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=52.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.++++|=.|++.|. ++..|++.|++|+.+.++++-.+.+.+.+.. . .++.++..|..+..--....+.+. ..
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~--~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR--AE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH--Hh
Confidence 46788888876554 4455666789999999997766555444432 1 267888999887543221111111 12
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|++|.|.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 35689998774
No 326
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=84.36 E-value=8.7 Score=35.90 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=52.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.+++..+.+.+.+... .++.++.+|..+...-.. ...+.+ ..
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~---~~ 85 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILE---DF 85 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hc
Confidence 46788888876443 44555566899999999987666555555433 367888999876542211 111111 12
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|..
T Consensus 86 g~id~li~~ag 96 (278)
T PRK08277 86 GPCDILINGAG 96 (278)
T ss_pred CCCCEEEECCC
Confidence 56788988743
No 327
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=84.31 E-value=9.1 Score=35.54 Aligned_cols=85 Identities=21% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.+++-.+.+.+.+...+ ++.++.+|..+..--....+... ...+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIE--KEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 56789988877554 455666778999999999877666665554433 68888999876542211111111 1225
Q ss_pred CeeEEEecCCC
Q 017450 217 GFAKVVANIPF 227 (371)
Q Consensus 217 ~~d~VVaNlPy 227 (371)
..|.+|.|.-+
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 67899887643
No 328
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.24 E-value=9.4 Score=35.13 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+++||=.|. +|.++..+ ++.|.+|+.++.++...+.+.+.+... .++.++.+|+.+...-....+-.. ...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFE--AEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHH--Hhc
Confidence 4678998885 45545444 446889999999987766665555443 257788899877442211111111 123
Q ss_pred CCeeEEEecCCC
Q 017450 216 SGFAKVVANIPF 227 (371)
Q Consensus 216 ~~~d~VVaNlPy 227 (371)
+..|.+|.|.-.
T Consensus 86 ~~~d~li~~ag~ 97 (255)
T PRK07523 86 GPIDILVNNAGM 97 (255)
T ss_pred CCCCEEEECCCC
Confidence 567888877543
No 329
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.23 E-value=9.7 Score=34.45 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~ 200 (371)
++++||=.|++ |.++. .+++.|.+|+++..+++-.+.+.+.....+++.++.+|..+.+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 66 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTE 66 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence 46789999986 33333 4445688999999998877666554444457888899988644
No 330
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.17 E-value=7.1 Score=36.77 Aligned_cols=82 Identities=21% Similarity=0.148 Sum_probs=48.6
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh-cc
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KS 214 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~-~~ 214 (371)
+++++|=.|++ .|. ++..|++.|++|+.++.++...+.+++.....+....+.+|+.+..--+ .+++.. ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~---~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVD---AVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHH---HHHHHHHHH
Confidence 46789999975 444 5666777799999998876544333333222233346778887754221 121111 12
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|++|.|.
T Consensus 83 ~g~iD~lVnnA 93 (271)
T PRK06505 83 WGKLDFVVHAI 93 (271)
T ss_pred hCCCCEEEECC
Confidence 35789999874
No 331
>PRK09242 tropinone reductase; Provisional
Probab=84.04 E-value=9 Score=35.29 Aligned_cols=85 Identities=24% Similarity=0.338 Sum_probs=52.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.++++|=.|++.|. ++..+++.|.+|+.++.+++-.+.+.+.+... .++.++.+|+.+...-....+... ..
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~ 85 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVE--DH 85 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH--HH
Confidence 46789989885443 34445556899999999987776665555332 367888899876432111111111 12
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.+|.|.-+
T Consensus 86 ~g~id~li~~ag~ 98 (257)
T PRK09242 86 WDGLHILVNNAGG 98 (257)
T ss_pred cCCCCEEEECCCC
Confidence 3567888877644
No 332
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=84.01 E-value=7.7 Score=35.92 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=47.6
Q ss_pred EEEEEcCcc-c-HHHHHHHHhCCeEEEEeCCHHHHHHHHH-HhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeE
Q 017450 144 IVLEIGPGT-G-SLTNVLLNAGATVLAIEKDQHMVGLVRE-RFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAK 220 (371)
Q Consensus 144 ~VLEIG~G~-G-~lt~~La~~~~~V~aIE~d~~~i~~a~~-~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~ 220 (371)
+++=||||. | .++..|.+.|..|++||.|++.++.... .. ...++++|+.+.+.- ++ .....+|.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd~t~~~~L-------~~-agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGDATDEDVL-------EE-AGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEecCCCHHHH-------Hh-cCCCcCCE
Confidence 466788873 3 3555666678899999999998877333 32 578999999876431 11 23456777
Q ss_pred EEecCCC
Q 017450 221 VVANIPF 227 (371)
Q Consensus 221 VVaNlPy 227 (371)
+++-..-
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 7764443
No 333
>PRK08267 short chain dehydrogenase; Provisional
Probab=83.90 E-value=9.7 Score=35.15 Aligned_cols=81 Identities=9% Similarity=0.064 Sum_probs=50.1
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~ 218 (371)
+++|=+|++.|. ++..+++.|.+|+.++.+++-.+.+..... ..++.++.+|+.+...-. ......+ ...++.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~--~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAA--ATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH--HcCCCC
Confidence 367778865432 445555668999999999887776655543 237889999997754211 1111111 013567
Q ss_pred eEEEecCC
Q 017450 219 AKVVANIP 226 (371)
Q Consensus 219 d~VVaNlP 226 (371)
|.||.|.-
T Consensus 79 d~vi~~ag 86 (260)
T PRK08267 79 DVLFNNAG 86 (260)
T ss_pred CEEEECCC
Confidence 88987754
No 334
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=83.64 E-value=9.7 Score=34.96 Aligned_cols=84 Identities=15% Similarity=0.166 Sum_probs=50.3
Q ss_pred CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|+.. |. ++..|++.|.+|+.++.++...+.+.+.+...+ ++.++.+|+.+...-+...+-.. ...+
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~ 83 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVA--ERFG 83 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 467888777642 21 344555668899999999876665555554333 67788999887543211111111 1124
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 84 ~~d~vi~~ag 93 (262)
T PRK13394 84 SVDILVSNAG 93 (262)
T ss_pred CCCEEEECCc
Confidence 5788887653
No 335
>PRK08862 short chain dehydrogenase; Provisional
Probab=83.47 E-value=9.3 Score=35.05 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..+++.|.+|+.+..+++.++.+.+.+... ..+..+..|..+..-- .......+ ..
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQ---QF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 46789999988876 56667777999999999988777665555433 2566667777653311 11111111 12
Q ss_pred C-CeeEEEecC
Q 017450 216 S-GFAKVVANI 225 (371)
Q Consensus 216 ~-~~d~VVaNl 225 (371)
+ ..|++|.|.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 4 689999885
No 336
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=83.46 E-value=12 Score=34.11 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=50.9
Q ss_pred CCCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~ 214 (371)
+++++|=.|++ |.++ ..|++.|.+|+.++.+......+...+... .++.++.+|+.+...-+. ...+.+ .
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~ 77 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQ---A 77 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence 35678888864 4444 444556889999999987766665554432 378899999876542211 111111 1
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.+|.|..+
T Consensus 78 ~~~~d~vi~~ag~ 90 (250)
T TIGR03206 78 LGPVDVLVNNAGW 90 (250)
T ss_pred cCCCCEEEECCCC
Confidence 2457888877654
No 337
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.45 E-value=10 Score=35.16 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=49.9
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
+++++|=.|.+ |.++.. |+++|.+|+.++.+++-.+.+.+.+... .++.++.+|..+...-....+... ...
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 85 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAV--EAF 85 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 46789988854 444444 4456889999999987666555544332 367888899877542211111111 112
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.||.|.
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 4678888764
No 338
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=83.39 E-value=1.2 Score=42.68 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=39.0
Q ss_pred HHHHHHHHHHh--c-CCCCCEEEEEcCcccHHHHHHHHhC-CeEEEEeCCHHHHH
Q 017450 127 SEINDQLAAAA--A-VQEGDIVLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVG 177 (371)
Q Consensus 127 ~~v~~~i~~~l--~-~~~~~~VLEIG~G~G~lt~~La~~~-~~V~aIE~d~~~i~ 177 (371)
-..+..+.+.+ + ...+++|||+|||.|.........+ ..+...|.+.+.++
T Consensus 99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 44555666443 2 3478999999999999988888777 68999999888774
No 339
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=83.36 E-value=11 Score=34.80 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~ 215 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.+....+.+...+... .++.++.+|+.+...- +....+.+ ..
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~ 86 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALS---KL 86 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence 46899999966543 34445566889999999887776655544332 3677888998875421 11111111 22
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 46788887743
No 340
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.29 E-value=11 Score=34.47 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=50.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchh-hhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI-RSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~-~~~~~~l~~~~~~ 214 (371)
.+++||=.|. +|.++..++ +.|.+|++++.+++..+.+...+... .+++++.+|+.+..- ......+.+ .
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 83 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET---E 83 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---h
Confidence 5678998884 444444444 45889999999988776666555332 368889999876432 111111111 2
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
.+..|.+|.|..
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 246788887754
No 341
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=83.29 E-value=4.7 Score=38.10 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=63.4
Q ss_pred EEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecC
Q 017450 146 LEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 146 LEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNl 225 (371)
|.--||+--++..+.....++.++|+.+.=...++.+|....++++..+|....--.. + .+.+.--.|+-++
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d~~vrv~~~DG~~~l~a~----L----PP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGDRRVRVLRGDGFLALKAH----L----PPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCCcceEEEecCcHHHHhhh----C----CCCCcceEEEeCC
Confidence 8899999999999998888999999999999999999987679999999976532211 1 2334466788899
Q ss_pred CCcccHH
Q 017450 226 PFNISTD 232 (371)
Q Consensus 226 Py~iss~ 232 (371)
||....+
T Consensus 165 PfE~~~e 171 (279)
T COG2961 165 PFELKDE 171 (279)
T ss_pred CcccccH
Confidence 9976653
No 342
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=83.20 E-value=8.4 Score=35.63 Aligned_cols=80 Identities=14% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhh-ccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~ 215 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.++. +.+.+..... .++.++.+|+.+..--. .+++.. ...
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDID---SIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHHHHHHc
Confidence 46889999976654 45556667899999887642 2222222222 36888899987754221 111111 123
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 82 g~iD~lv~~a 91 (251)
T PRK12481 82 GHIDILINNA 91 (251)
T ss_pred CCCCEEEECC
Confidence 5689999875
No 343
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.07 E-value=8.7 Score=35.83 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|+ |.|. ++..+++.|++|+.+..++...+.+++.....+....+.+|+.+.+--+...+... ...
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 82 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLG--KHW 82 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHH--HHh
Confidence 4678999996 4444 45555667899988776654444444443333444567888877543221111111 123
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 83 g~iD~lVnnA 92 (261)
T PRK08690 83 DGLDGLVHSI 92 (261)
T ss_pred CCCcEEEECC
Confidence 5689999885
No 344
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.06 E-value=9.4 Score=36.09 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=48.3
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++.+|=.|+ |.|. ++..+++.|++|+.++++++..+.+.+.....+.-..+.+|+.+..--+...+.+. ...
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~--~~~ 81 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLK--KDL 81 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHH--HHc
Confidence 4678999997 4554 45566677999999998864333333322222211567888877543221111111 123
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|++|.|--
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 56899998853
No 345
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.83 E-value=10 Score=35.08 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=51.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhhhhhHHHhh-c
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERR-K 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~~~~l~~~~-~ 213 (371)
.++++|=.|++.|. ++..+++.|++|+.++++++-.+.+.+.+.. . .++..+.+|+.+.+--. .+.+.. .
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~---~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVA---AFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHH---HHHHHHHH
Confidence 46789999976553 4455556689999999998766655444432 1 25777888887754211 111111 1
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|.+|.|.-
T Consensus 84 ~~g~id~li~~Ag 96 (265)
T PRK07062 84 RFGGVDMLVNNAG 96 (265)
T ss_pred hcCCCCEEEECCC
Confidence 2256788888753
No 346
>PRK08265 short chain dehydrogenase; Provisional
Probab=82.81 E-value=10 Score=35.20 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++.|. ++..+++.|.+|+.++++++-.+.+.+... .++.++.+|+.+..-- .......+ ..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~---~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVA---RFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHH---HhC
Confidence 46788988865432 445555668999999999775554444332 3678889999875321 11111111 224
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6788888753
No 347
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.74 E-value=9.8 Score=35.71 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|.| .|. ++..+++.|++|+.++.+....+.+.+.....+....+.+|+.+.+--+...+... ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 82 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELG--KVW 82 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHH--hhc
Confidence 46789999975 443 56777778999998888754333343332223456677888876442221111111 123
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|++|.|.-
T Consensus 83 g~iD~linnAg 93 (262)
T PRK07984 83 PKFDGFVHSIG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 56899998864
No 348
>PRK07791 short chain dehydrogenase; Provisional
Probab=82.72 E-value=11 Score=35.81 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=49.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH---------HHHHHHHHHhccC-CCeEEEEcccccchhhhh-hh
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ---------HMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-ML 206 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~---------~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~ 206 (371)
.++++|=.|++.|. ++..+++.|++|+.++.+. +-.+.+.+.+... .++.++..|+.+..--.. ..
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~ 84 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVD 84 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 56789999987664 4455666789999888764 3344333333322 367788889877542211 11
Q ss_pred hHHHhhccCCCeeEEEecC
Q 017450 207 SLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNl 225 (371)
...+ ..+..|.+|.|.
T Consensus 85 ~~~~---~~g~id~lv~nA 100 (286)
T PRK07791 85 AAVE---TFGGLDVLVNNA 100 (286)
T ss_pred HHHH---hcCCCCEEEECC
Confidence 1111 235688999874
No 349
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.63 E-value=13 Score=33.82 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=49.7
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
++++||=.|+ +|.++..+ ++.|.+|++++.+++-.....+.+... .++.++.+|+.+...-....+... ...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAA--AAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 4678887776 34445444 445889999999887666555544332 378899999986542111111111 112
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 4678888764
No 350
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.63 E-value=9.6 Score=35.90 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=48.0
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|. |.|. ++..+++.|++|+.+..++...+.+.+.....+....+.+|+.+..--+...+.+. ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE--KKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH--Hhc
Confidence 4678999997 4555 45666677999988877644333333333223445567888876432221111111 123
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 87 g~iD~lv~nA 96 (272)
T PRK08159 87 GKLDFVVHAI 96 (272)
T ss_pred CCCcEEEECC
Confidence 5689999885
No 351
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.48 E-value=9.5 Score=37.09 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=41.7
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEccccc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVK 198 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~ 198 (371)
.|+.+|=.|++.|. ++..++++|.+|+.++++++-.+.+.+.+.. . .++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 46789999976664 5666677799999999999877766655542 2 256667778763
No 352
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.45 E-value=11 Score=34.40 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhh-
Q 017450 140 QEGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERR- 212 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~- 212 (371)
.++++||=.|+ +|.++..+ ++.|.+|++++.+..-.+.+.+.+... .++.++.+|+...+..+. .++.+.+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNY-QQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHH-HHHHHHHH
Confidence 36788999995 45555444 445889999999987665555544432 257788888864332211 1111111
Q ss_pred ccCCCeeEEEecC
Q 017450 213 KSSSGFAKVVANI 225 (371)
Q Consensus 213 ~~~~~~d~VVaNl 225 (371)
...+..|.||.|.
T Consensus 88 ~~~~~id~vi~~A 100 (247)
T PRK08945 88 EQFGRLDGVLHNA 100 (247)
T ss_pred HHhCCCCEEEECC
Confidence 1224678888764
No 353
>PRK08303 short chain dehydrogenase; Provisional
Probab=82.42 E-value=9.3 Score=36.85 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH----------HHHHHHHHHhccCC-CeEEEEcccccchhhhhhh
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ----------HMVGLVRERFASID-QLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~----------~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~ 206 (371)
.++++|=.|++.|. ++..|++.|++|+.++++. +-++.+.+.+...+ ++.++.+|+.+..--+...
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 86 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV 86 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 56789999986654 4455556689999998873 23333333333333 5778889987754222111
Q ss_pred hHHHhhccCCCeeEEEecC
Q 017450 207 SLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNl 225 (371)
+... ...+..|++|.|.
T Consensus 87 ~~~~--~~~g~iDilVnnA 103 (305)
T PRK08303 87 ERID--REQGRLDILVNDI 103 (305)
T ss_pred HHHH--HHcCCccEEEECC
Confidence 1111 1225689999886
No 354
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.39 E-value=9.2 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|.+ .|. ++..|++.|.+|+.+..+++..+.+++... .++..+..|+.+..--+...+.+. ...
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~--~~~ 81 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIK--ERV 81 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHH--HHh
Confidence 46789988865 444 556666679999999888654444333321 357788899876432211111111 123
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|++|.|.-
T Consensus 82 g~iD~lv~nAg 92 (252)
T PRK06079 82 GKIDGIVHAIA 92 (252)
T ss_pred CCCCEEEEccc
Confidence 56899998853
No 355
>PRK05650 short chain dehydrogenase; Provisional
Probab=82.36 E-value=11 Score=35.00 Aligned_cols=81 Identities=11% Similarity=0.035 Sum_probs=47.3
Q ss_pred EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCee
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFA 219 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d 219 (371)
+||=.|+..|. ++..|++.|.+|+.++.+..-.+.+...+... .++.++.+|+.+...-....+.+. ...+..|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~--~~~~~id 79 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACE--EKWGGID 79 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH--HHcCCCC
Confidence 57767754332 34445556889999999877665554444332 367888999876442111111111 1224678
Q ss_pred EEEecCC
Q 017450 220 KVVANIP 226 (371)
Q Consensus 220 ~VVaNlP 226 (371)
.+|.|.-
T Consensus 80 ~lI~~ag 86 (270)
T PRK05650 80 VIVNNAG 86 (270)
T ss_pred EEEECCC
Confidence 8888743
No 356
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=82.35 E-value=9.5 Score=35.26 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHhcCCCCCEEEEEcCcccH--HHHHHHH--h--CCeEEEEeCCHHHHHHHHHHhccCC---CeEEEEccc
Q 017450 126 NSEINDQLAAAAAVQEGDIVLEIGPGTGS--LTNVLLN--A--GATVLAIEKDQHMVGLVRERFASID---QLKVLQEDF 196 (371)
Q Consensus 126 ~~~v~~~i~~~l~~~~~~~VLEIG~G~G~--lt~~La~--~--~~~V~aIE~d~~~i~~a~~~~~~~~---~v~vi~gD~ 196 (371)
.|.+.++|.+++.-...+.++|+.|+-|. .|..|+. + |.++++|-.|+.-....++.+...+ -++++.||.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 56788888888888888999999766443 4555543 2 7899999999888777777765443 358888885
Q ss_pred cc
Q 017450 197 VK 198 (371)
Q Consensus 197 ~~ 198 (371)
.+
T Consensus 106 ~e 107 (218)
T PF07279_consen 106 PE 107 (218)
T ss_pred HH
Confidence 43
No 357
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=81.94 E-value=11 Score=35.00 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~ 216 (371)
+++++|=.|++.|. ++..|++.|.+|+.++.+.+.++.+.+.. ..++..+.+|+.+..-.. ....+.+ ..+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 78 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH--GDAVVGVEGDVRSLDDHKEAVARCVA---AFG 78 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCceEEEEeccCCHHHHHHHHHHHHH---HhC
Confidence 46788888875442 44555567899999999887665554432 136778888987643211 1111111 125
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 79 ~id~li~~A 87 (262)
T TIGR03325 79 KIDCLIPNA 87 (262)
T ss_pred CCCEEEECC
Confidence 678888874
No 358
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=81.92 E-value=13 Score=34.17 Aligned_cols=83 Identities=12% Similarity=0.111 Sum_probs=51.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~ 215 (371)
.++++|=.|.+.|. ++..|++.|.+|+.++.++.-...+.+.+... .++..+.+|+.+.+--. ....+.+ ..
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 84 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK---DI 84 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---hc
Confidence 46789988865443 34455556889999999977666555554432 35677888887654211 1111111 23
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 56899998764
No 359
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=81.88 E-value=3.2 Score=39.07 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=55.7
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450 136 AAAVQEGDIVLEIGPGTGSLTNVLLNA-G--ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~La~~-~--~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.+.++++.+||=+|+++|..-...+.. | .-|+|||.++..=..+..-....+|+--+.-|+..-.---
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYR--------- 221 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYR--------- 221 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhee---------
Confidence 445779999999999999988888875 3 3699999986654444433333357766777775421000
Q ss_pred ccCCCeeEEEecCCCc
Q 017450 213 KSSSGFAKVVANIPFN 228 (371)
Q Consensus 213 ~~~~~~d~VVaNlPy~ 228 (371)
..-+-.|+|+++++-.
T Consensus 222 mlVgmVDvIFaDvaqp 237 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQP 237 (317)
T ss_pred eeeeeEEEEeccCCCc
Confidence 1124578888887643
No 360
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.73 E-value=12 Score=34.95 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++.+|=.|++ .|. ++..+++.|++|+.++.++...+.+++.....+...++..|+.+..--+...+.+. ...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~--~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIK--EKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHH--HHc
Confidence 46788888985 443 45667778999998888754333333332222333456788876532221111111 123
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|++|.|.-
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 56899998864
No 361
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.71 E-value=15 Score=33.16 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=40.8
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~ 200 (371)
.+.+||=+|. +|.++..++ +.|.+|+++++++.-...+.+.+.....+.++.+|+.+..
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~ 67 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEA 67 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHH
Confidence 3578998884 555555554 4588999999998766655555433246888899987643
No 362
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.70 E-value=1.5 Score=43.83 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCCCEEEEEcCcccHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccc
Q 017450 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKC 199 (371)
Q Consensus 131 ~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~ 199 (371)
=.....+.+.+|..|+|+-|..|.-|..++.. -.++.|.|.|.+..+..+..+...+ .++..++|++..
T Consensus 203 clpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t 276 (413)
T KOG2360|consen 203 CLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT 276 (413)
T ss_pred cchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC
Confidence 34555667778899999999999999999874 4589999999999999888876544 677889999885
No 363
>PRK06500 short chain dehydrogenase; Provisional
Probab=81.43 E-value=13 Score=33.85 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++++||=.|++.|. ++..+++.|.+|++++.+++....+.+.+. .++.++++|..+........+.+. ...+.
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 80 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG--ESALVIRADAGDVAAQKALAQALA--EAFGR 80 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC--CceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 45678888875432 344455568899999998776555544432 367788888876542211111111 12246
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|..+
T Consensus 81 id~vi~~ag~ 90 (249)
T PRK06500 81 LDAVFINAGV 90 (249)
T ss_pred CCEEEECCCC
Confidence 7888877543
No 364
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.27 E-value=14 Score=34.01 Aligned_cols=80 Identities=15% Similarity=0.249 Sum_probs=46.4
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+||=.|+. |.++.. +++.|.+|++++.++.-.+.+.+.+... .++.++.+|..+..--....+... ...+.
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 78 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAV--ARFGG 78 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 467777753 444444 4456889999999976655554444333 368888899877542111111110 11245
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
.|.||.|.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 78888764
No 365
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=81.25 E-value=4.9 Score=34.66 Aligned_cols=53 Identities=13% Similarity=0.245 Sum_probs=38.8
Q ss_pred eEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhhccCCCeeEEEecCCC
Q 017450 165 TVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 165 ~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
+|+|+|+.+++++..++++... .++++++.+-.+++.. .+.++.|.++-|+=|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~----------i~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY----------IPEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------------S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh----------CccCCcCEEEEECCc
Confidence 6999999999999999999875 3799999888876531 122478999999765
No 366
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=81.25 E-value=14 Score=34.15 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~ 215 (371)
.+++||=.|++.|. ++..|++.|++|+.++.++. .+.+.+.+... .++.++.+|+.+...-.... ...+ ..
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~---~~ 89 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTN-WDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALE---EF 89 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH---Hc
Confidence 56889999987654 44555667899999988843 33333333322 36888899988754321111 1111 22
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|..
T Consensus 90 g~id~li~~ag 100 (258)
T PRK06935 90 GKIDILVNNAG 100 (258)
T ss_pred CCCCEEEECCC
Confidence 46788887753
No 367
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=81.13 E-value=3 Score=35.52 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=25.5
Q ss_pred EEcCccc--HHHHHHHH--h--CCeEEEEeCCHHHHHHHHHH
Q 017450 147 EIGPGTG--SLTNVLLN--A--GATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 147 EIG~G~G--~lt~~La~--~--~~~V~aIE~d~~~i~~a~~~ 182 (371)
|||+..| ..+..++. . +.+|+++|.++..++.++.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 76666542 2 46899999999999999988
No 368
>PRK06196 oxidoreductase; Provisional
Probab=81.00 E-value=13 Score=35.72 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++ |.++. .|++.|.+|+++.++++..+.+.+.+. ++.++.+|+.+..--....+.+. ...+
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---~v~~~~~Dl~d~~~v~~~~~~~~--~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---GVEVVMLDLADLESVRAFAERFL--DSGR 98 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---hCeEEEccCCCHHHHHHHHHHHH--hcCC
Confidence 46789988865 44444 444568899999999876655544432 47788899887542211111111 1235
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|++|.|..
T Consensus 99 ~iD~li~nAg 108 (315)
T PRK06196 99 RIDILINNAG 108 (315)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 369
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=80.99 E-value=14 Score=33.94 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++ |.++. .|+++|.+|+.++.+....+.+.+... .++.++.+|+.+..--....+... ...+
T Consensus 5 ~~~~vlItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (257)
T PRK07067 5 QGKVALLTGAA-SGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--PAAIAVSLDVTRQDSIDRIVAAAV--ERFG 79 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHH--HHcC
Confidence 35688888854 44444 444568899999999887766555442 367888899876542211111111 1124
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 80 ~id~li~~a 88 (257)
T PRK07067 80 GIDILFNNA 88 (257)
T ss_pred CCCEEEECC
Confidence 578888764
No 370
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.93 E-value=4.7 Score=39.55 Aligned_cols=51 Identities=29% Similarity=0.502 Sum_probs=42.2
Q ss_pred HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHh
Q 017450 132 QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERF 183 (371)
Q Consensus 132 ~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~ 183 (371)
........+.|.+||=+|+|. |-+|...|+. | .+|+.+|.++..++.|++ +
T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~ 213 (354)
T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F 213 (354)
T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h
Confidence 445566788999999999995 7777777775 5 489999999999999998 5
No 371
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.93 E-value=16 Score=37.02 Aligned_cols=70 Identities=20% Similarity=0.152 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHhcCC--CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEccccc
Q 017450 125 LNSEINDQLAAAAAVQ--EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVK 198 (371)
Q Consensus 125 ~~~~v~~~i~~~l~~~--~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~ 198 (371)
.++.-+..+...+... ...+|+=+|+| .++..+++ .+.+|+.+|.|++.++.+++.. .++.++.||+.+
T Consensus 212 g~~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~---~~~~~i~gd~~~ 286 (453)
T PRK09496 212 GAREHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL---PNTLVLHGDGTD 286 (453)
T ss_pred eCHHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC---CCCeEEECCCCC
Confidence 3455556665555422 34678888884 44444443 4789999999999988887764 257789999976
Q ss_pred c
Q 017450 199 C 199 (371)
Q Consensus 199 ~ 199 (371)
.
T Consensus 287 ~ 287 (453)
T PRK09496 287 Q 287 (453)
T ss_pred H
Confidence 4
No 372
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=80.67 E-value=2.6 Score=39.26 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 129 v~~~i~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
++..|.+.+......+++|+-||+|..+..+...+..|+.-|+++..+...+..+.
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 45667777665467899999999999999888788899999999999888775554
No 373
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.63 E-value=15 Score=33.74 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~ 214 (371)
.++++|=.|+ +|.++..++ +.|.+|+.++.+.+-.+.+...+... .++.++.+|+.+...- .....+.+ .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~---~ 86 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLE---R 86 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH---H
Confidence 4678999984 455555544 45889999999987766666555433 3678889998875321 11111111 1
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.||.|...
T Consensus 87 ~~~id~vi~~ag~ 99 (259)
T PRK08213 87 FGHVDILVNNAGA 99 (259)
T ss_pred hCCCCEEEECCCC
Confidence 2457888887543
No 374
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.49 E-value=4.2 Score=43.38 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=45.9
Q ss_pred CEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
++|+=+|+| ..+..++ +.+.+++.+|.|++.++.+++. ...++.||+.+.+.-+. ..-++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~--------agi~~A 465 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRA--------AGAEKA 465 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHh--------cCCccC
Confidence 356656554 5444444 3478999999999999988753 57799999998653211 123456
Q ss_pred eEEEecCC
Q 017450 219 AKVVANIP 226 (371)
Q Consensus 219 d~VVaNlP 226 (371)
+.+|...+
T Consensus 466 ~~vv~~~~ 473 (601)
T PRK03659 466 EAIVITCN 473 (601)
T ss_pred CEEEEEeC
Confidence 67776555
No 375
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=80.48 E-value=16 Score=35.10 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|+..|. ++..|++.|.+|+.++.+..-.+.+.+.+.. ..++.++.+|..+..--....+.+. ...+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 82 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFR--ALGK 82 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHH--HhCC
Confidence 46788888865432 3445555688999999988766655554432 2368888899876542111111111 1124
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|++|.|-
T Consensus 83 ~iD~li~nA 91 (322)
T PRK07453 83 PLDALVCNA 91 (322)
T ss_pred CccEEEECC
Confidence 578998874
No 376
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.31 E-value=4.4 Score=40.74 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHhcCCCCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450 134 AAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 134 ~~~l~~~~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
.+.+++.++++||-|.+|-.+...++.+..++|+|||+++.-...++-+.+
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 455678899999999877655555555556799999999998887765544
No 377
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.26 E-value=17 Score=33.00 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~ 214 (371)
.+++||=.|++ |.++.. ++++|.+|+++..++.-...+...+... .++.++.+|..+..-- ....... ..
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~---~~ 80 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGV---ED 80 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH---HH
Confidence 45688877754 555444 4556889999999966555444444332 3688899998764321 1111111 11
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.||.|...
T Consensus 81 ~~~~d~vi~~ag~ 93 (251)
T PRK12826 81 FGRLDILVANAGI 93 (251)
T ss_pred hCCCCEEEECCCC
Confidence 2457888877543
No 378
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.18 E-value=16 Score=33.27 Aligned_cols=83 Identities=14% Similarity=0.214 Sum_probs=49.8
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhh-hHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHML-SLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~-~l~~~~~~ 214 (371)
.++++|=.|+ +|.++..+ ++.|.+|+.++.++.-.+.+.+.+... +++..+.+|..+..--.... .+.+ .
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 80 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS---A 80 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH---H
Confidence 4578888884 44544444 456889999999976655554444322 36778888987654211111 1111 1
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.||.|..+
T Consensus 81 ~~~id~vi~~ag~ 93 (250)
T PRK07774 81 FGGIDYLVNNAAI 93 (250)
T ss_pred hCCCCEEEECCCC
Confidence 2457899987653
No 379
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.87 E-value=16 Score=33.73 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=51.6
Q ss_pred CCCEEEEEcC-c--ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhhhhhHHHhh-
Q 017450 141 EGDIVLEIGP-G--TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSHMLSLFERR- 212 (371)
Q Consensus 141 ~~~~VLEIG~-G--~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~~~~l~~~~- 212 (371)
.++++|=.|. | .|. ++..+++.|.+|+.++.+++-.+.+.+.+.. . .++.++.+|+.+.+.-+ .+++..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~ 92 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVD---ALIDAAV 92 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHH---HHHHHHH
Confidence 4678888885 3 454 4555666789999999988766665555432 2 26788889987643211 111110
Q ss_pred ccCCCeeEEEecCC
Q 017450 213 KSSSGFAKVVANIP 226 (371)
Q Consensus 213 ~~~~~~d~VVaNlP 226 (371)
...+..|.+|.|.-
T Consensus 93 ~~~g~id~li~~ag 106 (262)
T PRK07831 93 ERLGRLDVLVNNAG 106 (262)
T ss_pred HHcCCCCEEEECCC
Confidence 11246788888754
No 380
>PRK06182 short chain dehydrogenase; Validated
Probab=79.86 E-value=15 Score=34.33 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=46.9
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
+++||=.|++. .++..+ ++.|.+|++++.+++-++.+.. .+++++.+|+.+...-+...+.+. ...+.
T Consensus 3 ~k~vlItGasg-giG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~--~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASS-GIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----LGVHPLSLDVTDEASIKAAVDTII--AEEGR 74 (273)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----CCCeEEEeeCCCHHHHHHHHHHHH--HhcCC
Confidence 56788888643 344444 4558899999998775543321 257888899877542211111111 12346
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|..+
T Consensus 75 id~li~~ag~ 84 (273)
T PRK06182 75 IDVLVNNAGY 84 (273)
T ss_pred CCEEEECCCc
Confidence 8999988654
No 381
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.76 E-value=4.7 Score=42.49 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=37.1
Q ss_pred CEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450 143 DIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~ 200 (371)
++|+=+||| ..+..+++ .+.+++.||.|++.++.+++. +..+++||+.+-.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~ 472 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEE 472 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHH
Confidence 355555554 55544444 478999999999999888753 5789999998754
No 382
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.65 E-value=10 Score=32.13 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=49.4
Q ss_pred EEEEEcCcccH---HHHHHHHhCC-eEEEEeCC--HHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGA-TVLAIEKD--QHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~-~V~aIE~d--~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
+||=+|++.|. ++..+++.|. +|+.+..+ ....+.+...+.. ..++.+++.|+.+...-....+... ...+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI--KRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH--HHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 56777877554 4556666654 78899988 5555555554443 2488999999876542221111111 1236
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|..
T Consensus 80 ~ld~li~~ag 89 (167)
T PF00106_consen 80 PLDILINNAG 89 (167)
T ss_dssp SESEEEEECS
T ss_pred cccccccccc
Confidence 7899998854
No 383
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.35 E-value=15 Score=34.01 Aligned_cols=85 Identities=8% Similarity=0.120 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCcccH---HHHHHHHhC-CeEEEEeCCHHH-HHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhh
Q 017450 140 QEGDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHM-VGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~---lt~~La~~~-~~V~aIE~d~~~-i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
..+++||=.|++.|. ++..+++.| .+|+.+++++.- .+.+.+.+...+ +++++.+|+.+..--. ++++..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~---~~~~~~ 82 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHP---KVIDAA 82 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHH---HHHHHH
Confidence 356789999986543 333444554 799999988763 444444443322 6889999987643211 111111
Q ss_pred ccCCCeeEEEecCCC
Q 017450 213 KSSSGFAKVVANIPF 227 (371)
Q Consensus 213 ~~~~~~d~VVaNlPy 227 (371)
...+..|.+|.|...
T Consensus 83 ~~~g~id~li~~ag~ 97 (253)
T PRK07904 83 FAGGDVDVAIVAFGL 97 (253)
T ss_pred HhcCCCCEEEEeeec
Confidence 112468888877644
No 384
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.26 E-value=11 Score=34.98 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=47.6
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCH--HHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQ--HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~--~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
.++++|=.|+ |.|. ++..|++.|++|+.++++. +..+.+.+.+. .++..+..|+.+..--+...+... .
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~--~ 81 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP--EPAPVLELDVTNEEHLASLADRVR--E 81 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC--CCCcEEeCCCCCHHHHHHHHHHHH--H
Confidence 4678999998 3443 3444555689999988763 44444443332 256678888877542221111111 1
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|++|.|.
T Consensus 82 ~~g~iD~li~nA 93 (256)
T PRK07889 82 HVDGLDGVVHSI 93 (256)
T ss_pred HcCCCcEEEEcc
Confidence 235689999875
No 385
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=79.02 E-value=16 Score=33.26 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.++. ..+.+..... +++.++.+|+.+..--....+... ...+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV--EEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HHcC
Confidence 46789999986443 34555566889999998752 2222222222 368888999887542221111111 1224
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 6788987753
No 386
>PRK05993 short chain dehydrogenase; Provisional
Probab=78.95 E-value=15 Score=34.51 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=47.0
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~ 217 (371)
+++||=.|++.|. ++..+++.|.+|++++.+++..+.+.. .+++++.+|..+...-+ ......+ ...+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~-----~~~~~~~~Dl~d~~~~~~~~~~~~~--~~~g~ 76 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA-----EGLEAFQLDYAEPESIAALVAQVLE--LSGGR 76 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----CCceEEEccCCCHHHHHHHHHHHHH--HcCCC
Confidence 4688888875433 344445568899999999876655433 25778888987643211 1111111 11246
Q ss_pred eeEEEecCC
Q 017450 218 FAKVVANIP 226 (371)
Q Consensus 218 ~d~VVaNlP 226 (371)
.|.+|.|.-
T Consensus 77 id~li~~Ag 85 (277)
T PRK05993 77 LDALFNNGA 85 (277)
T ss_pred ccEEEECCC
Confidence 789988753
No 387
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=78.89 E-value=7.7 Score=38.66 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHhccC-C-CeEEEEcccccc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERFASI-D-QLKVLQEDFVKC 199 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~~~~-~-~v~vi~gD~~~~ 199 (371)
+.+|||.=+|+|.=++..+.. +. +|+.=|++++.++..++|+..+ + +..+++.|+..+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 679999999999999888876 44 8999999999999999999866 3 667777777654
No 388
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.86 E-value=16 Score=34.78 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=49.2
Q ss_pred CCCEEEEEcCccc--H-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhh-hHHHhhc
Q 017450 141 EGDIVLEIGPGTG--S-LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHML-SLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G--~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~-~l~~~~~ 213 (371)
.+++||=.|+..| . ++..|++.|.+|+.+..+..-.+.+.+.+.. ..++.++.+|+.+...-.... .+.+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~--- 91 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA--- 91 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh---
Confidence 5678988886433 2 3344455688999999987765554444332 136788899988754221111 1111
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|.+|.|.
T Consensus 92 ~~~~iD~li~nA 103 (306)
T PRK06197 92 AYPRIDLLINNA 103 (306)
T ss_pred hCCCCCEEEECC
Confidence 224678998875
No 389
>PRK06720 hypothetical protein; Provisional
Probab=78.85 E-value=24 Score=31.02 Aligned_cols=83 Identities=18% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchh-hhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI-RSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~-~~~~~~l~~~~~~~ 215 (371)
.++.+|=.|.|.|. ++..+++.|.+|+.++.+....+.+.+.+... +...++..|..+... ........+ ..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~---~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLN---AF 91 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH---Hc
Confidence 46788888876543 44556667899999999887665554444322 356677888765432 111111111 23
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 92 G~iDilVnnAG 102 (169)
T PRK06720 92 SRIDMLFQNAG 102 (169)
T ss_pred CCCCEEEECCC
Confidence 56899998854
No 390
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.85 E-value=19 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+++||=.|. +|.++..+++ .|.+|++++.++.-.+.+....... .++.++.+|+.+...-....+... ...
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~ 79 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAV--ETF 79 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH--HHc
Confidence 3567887775 4555555554 5889999999987666555444322 378889999876442111111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.||.|..
T Consensus 80 ~~~d~vi~~a~ 90 (258)
T PRK12429 80 GGVDILVNNAG 90 (258)
T ss_pred CCCCEEEECCC
Confidence 45788887754
No 391
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.77 E-value=18 Score=33.61 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~ 214 (371)
+++++|=.|. +|.++ ..+++.|++|++++++++-.+...+.+... .++.++.+|+.+...- ....+..+ .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~---~ 83 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD---E 83 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH---H
Confidence 5678888885 34444 445556889999999877665554444332 3567888898764321 11111111 1
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|.+|.|.
T Consensus 84 ~~~iD~vi~~a 94 (264)
T PRK07576 84 FGPIDVLVSGA 94 (264)
T ss_pred cCCCCEEEECC
Confidence 24578888764
No 392
>PRK05717 oxidoreductase; Validated
Probab=78.64 E-value=17 Score=33.41 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSH-MLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~ 216 (371)
.+++||=.|.+.|. ++..|++.|.+|+.++.++.-...+.+... .++.++.+|+.+...-.. ...+.+ ..+
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~---~~g 83 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALG--ENAWFIAMDVADEAQVAAGVAEVLG---QFG 83 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcC--CceEEEEccCCCHHHHHHHHHHHHH---HhC
Confidence 46789988864332 344455568899999988764444333322 367888999887542111 111211 224
Q ss_pred CeeEEEecCCC
Q 017450 217 GFAKVVANIPF 227 (371)
Q Consensus 217 ~~d~VVaNlPy 227 (371)
..|.+|.|..+
T Consensus 84 ~id~li~~ag~ 94 (255)
T PRK05717 84 RLDALVCNAAI 94 (255)
T ss_pred CCCEEEECCCc
Confidence 67999987543
No 393
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.63 E-value=17 Score=33.43 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=50.2
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..+++.|++|++++.+++..+.+.+.+... .++.++.+|..+..-- ..+.+ ..
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~---~~~~~---~~ 79 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAR---EQLAA---EA 79 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHH---HHHHH---Hh
Confidence 46788888975442 33445566889999999988776665555432 3678888888764321 11222 12
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 80 g~id~lv~~a 89 (259)
T PRK06125 80 GDIDILVNNA 89 (259)
T ss_pred CCCCEEEECC
Confidence 5678888774
No 394
>PTZ00357 methyltransferase; Provisional
Probab=78.62 E-value=4.5 Score=43.47 Aligned_cols=81 Identities=23% Similarity=0.277 Sum_probs=49.5
Q ss_pred EEEEEcCcccHHHHHHHHh----C--CeEEEEeCCHHHHHHHHHHh---ccC--------CCeEEEEcccccchhhhhhh
Q 017450 144 IVLEIGPGTGSLTNVLLNA----G--ATVLAIEKDQHMVGLVRERF---ASI--------DQLKVLQEDFVKCHIRSHML 206 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~~----~--~~V~aIE~d~~~i~~a~~~~---~~~--------~~v~vi~gD~~~~~~~~~~~ 206 (371)
.|+=+|+|-|-|-....+. + .+|++||.++..+.....+. ... +.|+++..|+.++.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999986555443 3 38999999976544443332 222 24899999999985431000
Q ss_pred hHHHhhccCCCeeEEEecC
Q 017450 207 SLFERRKSSSGFAKVVANI 225 (371)
Q Consensus 207 ~l~~~~~~~~~~d~VVaNl 225 (371)
.. ..-...++.|+||+-|
T Consensus 783 s~-~~P~~~gKaDIVVSEL 800 (1072)
T PTZ00357 783 SL-TLPADFGLCDLIVSEL 800 (1072)
T ss_pred cc-cccccccccceehHhh
Confidence 00 0000113689998755
No 395
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=78.61 E-value=4.3 Score=42.25 Aligned_cols=71 Identities=20% Similarity=0.440 Sum_probs=51.9
Q ss_pred CEEEEEcCcccHHHHHHHHh------CCeEEEEeCCHHHHHHHHHH-hccC-CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 143 DIVLEIGPGTGSLTNVLLNA------GATVLAIEKDQHMVGLVRER-FASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~~------~~~V~aIE~d~~~i~~a~~~-~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
..|+=+|.|-|-+.....+. ..++++||.++.++-.++.. +... ++|+++.+|+.+++..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap------------ 436 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAP------------ 436 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCc------------
Confidence 46788899999987665543 34899999999998877653 3333 4899999999998632
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
..+.|++|+-|
T Consensus 437 ~eq~DI~VSEL 447 (649)
T KOG0822|consen 437 REQADIIVSEL 447 (649)
T ss_pred hhhccchHHHh
Confidence 14567777543
No 396
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.53 E-value=6.4 Score=38.91 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=43.8
Q ss_pred cCCCHHHHH--HHHHHhcCCCCCEEEEEcCcc-cHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhc
Q 017450 123 YMLNSEIND--QLAAAAAVQEGDIVLEIGPGT-GSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 123 fl~~~~v~~--~i~~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~ 184 (371)
.++++--+. .........++++|+=+|||. |.++..+++. | .+|+++|++++.++.|++...
T Consensus 148 al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 148 ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC
Confidence 344444333 223333444556999999995 7777777776 4 589999999999999998653
No 397
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=78.33 E-value=1.1 Score=36.36 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.3
Q ss_pred CeeEEEecCCCcccH
Q 017450 217 GFAKVVANIPFNIST 231 (371)
Q Consensus 217 ~~d~VVaNlPy~iss 231 (371)
.||+|||||||....
T Consensus 2 kFD~VIGNPPY~~~~ 16 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIK 16 (106)
T ss_pred CcCEEEECCCChhhc
Confidence 489999999996554
No 398
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=78.15 E-value=19 Score=32.75 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=47.7
Q ss_pred CEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++||=.| |+|.++..++ ++|.+|++++.++...+.+...+... .++.++.+|+.+..--......+. ...+.
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAA--AEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH--HhcCC
Confidence 3567677 4466655555 45889999999987666655544332 368889999987542111111111 11245
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
.|.||.|.
T Consensus 79 ~d~vi~~a 86 (255)
T TIGR01963 79 LDILVNNA 86 (255)
T ss_pred CCEEEECC
Confidence 78888764
No 399
>PRK08251 short chain dehydrogenase; Provisional
Probab=78.10 E-value=20 Score=32.58 Aligned_cols=80 Identities=11% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~-~~~~~l~~~~~ 213 (371)
++++|=.|+ +|.++..++ +.|.+|+.++.++...+.+...+... .++.++.+|+.+...- .....+.+
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~--- 77 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRD--- 77 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHH---
Confidence 357887785 455555544 45889999999987776655544321 2678889998875321 11111111
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|.+|.|.
T Consensus 78 ~~~~id~vi~~a 89 (248)
T PRK08251 78 ELGGLDRVIVNA 89 (248)
T ss_pred HcCCCCEEEECC
Confidence 224578888774
No 400
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=78.08 E-value=8.6 Score=39.11 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=44.9
Q ss_pred cccCCCHHHHHHHHHHhcC-CCCCEEEEEcCcc-cHHHHHHHH-hCCeEEEEeCCHHHHHHHHH
Q 017450 121 QHYMLNSEINDQLAAAAAV-QEGDIVLEIGPGT-GSLTNVLLN-AGATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 121 Q~fl~~~~v~~~i~~~l~~-~~~~~VLEIG~G~-G~lt~~La~-~~~~V~aIE~d~~~i~~a~~ 181 (371)
..+-+-+.+.+.+....+. ..|++|+=+|+|. |......++ .|++|+.+|+|+.....|+.
T Consensus 180 n~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 180 NLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred ccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 3344556777888887665 4789999999995 555555554 38899999999987777664
No 401
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.88 E-value=19 Score=33.48 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+++||=.|++.|. ++..|++.|.+|+.++.+++-.+.+.+.+. ++.++.+|+.+.+--+...+-+. ...+.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 78 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG---LVVGGPLDVTDPASFAAFLDAVE--ADLGP 78 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---cceEEEccCCCHHHHHHHHHHHH--HHcCC
Confidence 35689988886443 344455668899999999877665544432 57788899876432111111111 11245
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
.|.+|.|.
T Consensus 79 id~li~~a 86 (273)
T PRK07825 79 IDVLVNNA 86 (273)
T ss_pred CCEEEECC
Confidence 78888774
No 402
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.73 E-value=22 Score=32.19 Aligned_cols=83 Identities=11% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+.++|=.|+ +|.++..++ +.|.+|+.+++++.-.+.....+... .++.++.+|..+..--....+... ...
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 82 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLK--NEL 82 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHH--HHc
Confidence 3567888885 566666554 45889999999876555444333322 368888999876532111111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|..
T Consensus 83 ~~id~vi~~ag 93 (239)
T PRK07666 83 GSIDILINNAG 93 (239)
T ss_pred CCccEEEEcCc
Confidence 45788887753
No 403
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.39 E-value=8.2 Score=38.35 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=40.2
Q ss_pred HHhcCCCCCEEEEEcCcc-cHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHHh
Q 017450 135 AAAAVQEGDIVLEIGPGT-GSLTNVLLNA-GA-TVLAIEKDQHMVGLVRERF 183 (371)
Q Consensus 135 ~~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~~ 183 (371)
......++++||.+|+|. |..+..+++. |. +|++++.+++..+.+++..
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC
Confidence 345567889999999988 8888888886 65 6999999999999888753
No 404
>PRK07074 short chain dehydrogenase; Provisional
Probab=76.82 E-value=25 Score=32.24 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=47.9
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~~ 218 (371)
+++|=.|++.|. ++..|++.|.+|++++.++.-.+.+.+.+. ..++.++.+|+.+...-. ......+ ..+..
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~~ 78 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG-DARFVPVACDLTDAASLAAALANAAA---ERGPV 78 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHH---HcCCC
Confidence 467778875443 344455568899999999876655544442 236788899987754221 1111111 12457
Q ss_pred eEEEecC
Q 017450 219 AKVVANI 225 (371)
Q Consensus 219 d~VVaNl 225 (371)
|.||.|.
T Consensus 79 d~vi~~a 85 (257)
T PRK07074 79 DVLVANA 85 (257)
T ss_pred CEEEECC
Confidence 8888775
No 405
>PRK08628 short chain dehydrogenase; Provisional
Probab=76.67 E-value=22 Score=32.68 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~ 216 (371)
.++++|=+|.+.|. ++..|+++|.+|+.+..++...+...+......++.++.+|+.+..--. ....+.+ ..+
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 82 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVA---KFG 82 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---hcC
Confidence 46788888865332 3445556688999999887655333322222247888999987654211 1111111 124
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.||.|..
T Consensus 83 ~id~vi~~ag 92 (258)
T PRK08628 83 RIDGLVNNAG 92 (258)
T ss_pred CCCEEEECCc
Confidence 6788887754
No 406
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=76.54 E-value=23 Score=33.35 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=56.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh-hhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI-RSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~-~~~~~~l~~~~~~~~ 216 (371)
+++.||==|.++|. .+..|++.|.+|+.+.+..+.++.+...+.. +.+..+.-|..+..- ...+..+.+ ..+
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~---~~g 80 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPE---EFG 80 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHH---hhC
Confidence 34667777777765 5667777899999999999988888887764 567778888877532 111222222 346
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|++|-|-
T Consensus 81 ~iDiLvNNA 89 (246)
T COG4221 81 RIDILVNNA 89 (246)
T ss_pred cccEEEecC
Confidence 789999884
No 407
>PRK06180 short chain dehydrogenase; Provisional
Probab=76.50 E-value=20 Score=33.56 Aligned_cols=80 Identities=15% Similarity=0.056 Sum_probs=48.5
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~ 217 (371)
+++||=.|++.|. ++..|++.|.+|++++.++...+.+.+.. .+++..+.+|+.+..--. ......+ ..+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~---~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH--PDRALARLLDVTDFDAIDAVVADAEA---TFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc--CCCeeEEEccCCCHHHHHHHHHHHHH---HhCC
Confidence 4678988885443 34455556889999999987665544332 136778888987654211 1111111 1245
Q ss_pred eeEEEecCC
Q 017450 218 FAKVVANIP 226 (371)
Q Consensus 218 ~d~VVaNlP 226 (371)
.|.||.|.-
T Consensus 79 ~d~vv~~ag 87 (277)
T PRK06180 79 IDVLVNNAG 87 (277)
T ss_pred CCEEEECCC
Confidence 788887753
No 408
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.48 E-value=15 Score=34.15 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=48.2
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCH---HHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQ---HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~---~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.++++|=.|.+ .|. ++..+++.|++|+.++.+. +.++.+.+... .+++..+..|+.+..--+...+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~-- 82 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIK-- 82 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHH--
Confidence 46789999964 554 4555666789999886543 33333333332 2367788899876542221111111
Q ss_pred ccCCCeeEEEecCC
Q 017450 213 KSSSGFAKVVANIP 226 (371)
Q Consensus 213 ~~~~~~d~VVaNlP 226 (371)
...+..|++|.|.-
T Consensus 83 ~~~g~ld~lv~nag 96 (257)
T PRK08594 83 EEVGVIHGVAHCIA 96 (257)
T ss_pred HhCCCccEEEECcc
Confidence 12366899987753
No 409
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.36 E-value=19 Score=34.46 Aligned_cols=82 Identities=18% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..|++.|++|+.++.. ....+.+.+.+... +++.++.+|+.+..--.. +++.....
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~---~~~~~~~~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADE---LVATAVGL 87 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH---HHHHHHHh
Confidence 56789988887654 455566678999999874 33333333333322 367888899877532211 11111113
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 88 g~iD~li~nA 97 (306)
T PRK07792 88 GGLDIVVNNA 97 (306)
T ss_pred CCCCEEEECC
Confidence 5689998874
No 410
>PRK06841 short chain dehydrogenase; Provisional
Probab=76.28 E-value=24 Score=32.28 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+++||=.|++.|. ++..+++.|.+|+.++.++...+.+.+.. ..++..+..|+.+..--....+... ...+.
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~--~~~~~ 89 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVI--SAFGR 89 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh--CCceEEEEecCCCHHHHHHHHHHHH--HHhCC
Confidence 46789988865433 44555667899999999987544443321 1356788888876542111111111 11245
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|.-+
T Consensus 90 ~d~vi~~ag~ 99 (255)
T PRK06841 90 IDILVNSAGV 99 (255)
T ss_pred CCEEEECCCC
Confidence 7888887644
No 411
>PRK06057 short chain dehydrogenase; Provisional
Probab=76.18 E-value=20 Score=32.88 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+++||=+|++.|. ++..++++|.+|++++.++.-.+...+.+. ..++.+|..+...-....+... ...+.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~--~~~~~ 79 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVG----GLFVPTDVTDEDAVNALFDTAA--ETYGS 79 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcC----CcEEEeeCCCHHHHHHHHHHHH--HHcCC
Confidence 56799999985332 334445568899999998776555444432 2467778776432111111111 11245
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
.|.+|.|.
T Consensus 80 id~vi~~a 87 (255)
T PRK06057 80 VDIAFNNA 87 (255)
T ss_pred CCEEEECC
Confidence 78888764
No 412
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=76.13 E-value=30 Score=33.09 Aligned_cols=89 Identities=13% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.+.++|=-|+-.|. ++..|+++|.+|+.|-++++-++.+.+.++... .+.++..|..+.+-.....+.+. ...
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~--~~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELK--ERG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHH--hcC
Confidence 46688888876554 677777889999999999998888777776432 67888999887653332222221 122
Q ss_pred CCeeEEEecCCCcccH
Q 017450 216 SGFAKVVANIPFNIST 231 (371)
Q Consensus 216 ~~~d~VVaNlPy~iss 231 (371)
...|++|-|-=|....
T Consensus 83 ~~IdvLVNNAG~g~~g 98 (265)
T COG0300 83 GPIDVLVNNAGFGTFG 98 (265)
T ss_pred CcccEEEECCCcCCcc
Confidence 4689999886554443
No 413
>PRK06701 short chain dehydrogenase; Provisional
Probab=75.87 E-value=21 Score=33.87 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH-HHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~-~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
++++||=.|++.|. ++..+++.|.+|+.+..++ ...+.....+... .++.++.+|+.+...-+...+... ...
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~--~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETV--REL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HHc
Confidence 56789999865433 4445556689999998764 2333333333332 367888999877542211111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|.-
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 45788887743
No 414
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.72 E-value=20 Score=32.58 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=46.1
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
++||=.|+. |.++.. +++.|.+|+++++++.-.+...+.... .+++.++.+|..+...- ..+.+. ...
T Consensus 2 ~~vlItGas-~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~---~~~~~~--~~~ 75 (243)
T PRK07102 2 KKILIIGAT-SDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASH---AAFLDS--LPA 75 (243)
T ss_pred cEEEEEcCC-cHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHH---HHHHHH--Hhh
Confidence 467877854 444444 445688999999998765544443322 23788999998875321 111111 012
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|..
T Consensus 76 ~~d~vv~~ag 85 (243)
T PRK07102 76 LPDIVLIAVG 85 (243)
T ss_pred cCCEEEECCc
Confidence 3588887643
No 415
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=75.55 E-value=6.6 Score=32.75 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=37.3
Q ss_pred CEEEEEcCcccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh
Q 017450 143 DIVLEIGPGTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (371)
Q Consensus 143 ~~VLEIG~G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~ 201 (371)
.+|.|||-|-=. .+..|+++|..|+++|+++. .+. ..++++..|+.+-..
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~------~g~~~v~DDitnP~~ 65 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP------EGLRFVVDDITNPNI 65 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc------ccceEEEccCCCccH
Confidence 489999876433 56778888999999999987 111 267888888877543
No 416
>PRK05855 short chain dehydrogenase; Validated
Probab=75.53 E-value=20 Score=37.06 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=50.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+.++|=+|+..|. ++..|++.|.+|+.++.+..-.+.+.+.+... .++.++.+|+.+...-....+.+. ...+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~--~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVR--AEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HhcC
Confidence 34678888864332 34455566889999999987766655554433 368888999887542211111111 1235
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|++|.|-
T Consensus 392 ~id~lv~~A 400 (582)
T PRK05855 392 VPDIVVNNA 400 (582)
T ss_pred CCcEEEECC
Confidence 678998874
No 417
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=75.26 E-value=6.8 Score=41.99 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=39.6
Q ss_pred CEEEEEcCcc-cHHH-HHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh
Q 017450 143 DIVLEIGPGT-GSLT-NVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201 (371)
Q Consensus 143 ~~VLEIG~G~-G~lt-~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~ 201 (371)
++|+=+|+|. |... ..|.+.+.+++.+|.|++.++.+++. +.+++.||+.+.+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~ 456 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRMDL 456 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCHHH
Confidence 5677777763 4322 33344578999999999999988763 57799999998754
No 418
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.23 E-value=28 Score=32.37 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
++++|=.|++.|. ++..|+++|.+|++++.+++-.+...+.... ..++.++.+|+.+...-+......+ ..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~---~~ 79 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLK---EI 79 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHH---hc
Confidence 4578888864332 3334455688999999988766555443322 1368889999987542111111111 22
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.||.|.-
T Consensus 80 ~~id~vv~~ag 90 (280)
T PRK06914 80 GRIDLLVNNAG 90 (280)
T ss_pred CCeeEEEECCc
Confidence 46788887753
No 419
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.23 E-value=20 Score=32.78 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=46.5
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
++||=.|++.|. ++..|++.|.+|+++..++.-.+.+.+..... .++.++.+|+.+..--. .. .....
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~-----~~~~i 74 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRA---QA-----AEWDV 74 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHH---HH-----hcCCC
Confidence 478888875443 33444556889999999876655555444332 36888889987643111 11 12357
Q ss_pred eEEEecC
Q 017450 219 AKVVANI 225 (371)
Q Consensus 219 d~VVaNl 225 (371)
|.||.|-
T Consensus 75 d~vi~~a 81 (257)
T PRK09291 75 DVLLNNA 81 (257)
T ss_pred CEEEECC
Confidence 8888874
No 420
>PRK05875 short chain dehydrogenase; Provisional
Probab=74.96 E-value=28 Score=32.38 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhhhhhHHHhh-
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERR- 212 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~~~~l~~~~- 212 (371)
.++++|=.|++ |.++.. |++.|.+|++++.+++-.+...+.+... .++.++.+|+.+...-. .+++..
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~ 81 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVA---RAVDAAT 81 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHH---HHHHHHH
Confidence 45789988864 334444 4456889999999876655444443321 36788889987643211 111110
Q ss_pred ccCCCeeEEEecC
Q 017450 213 KSSSGFAKVVANI 225 (371)
Q Consensus 213 ~~~~~~d~VVaNl 225 (371)
...+..|.+|.|.
T Consensus 82 ~~~~~~d~li~~a 94 (276)
T PRK05875 82 AWHGRLHGVVHCA 94 (276)
T ss_pred HHcCCCCEEEECC
Confidence 1124578888764
No 421
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=74.90 E-value=27 Score=32.23 Aligned_cols=83 Identities=8% Similarity=0.119 Sum_probs=48.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEe-CCHHHHHHHHHHhcc--CCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIE-KDQHMVGLVRERFAS--IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE-~d~~~i~~a~~~~~~--~~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.+++||=.|++.|. ++..+++.|++|+.+. .+++..+...+.+.. ..++.++..|+.+.+--....+.+. ..
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 84 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID--ED 84 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--Hh
Confidence 56789988876554 5556666789988774 455544443333322 1367888999887542221111111 12
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|++|.|.
T Consensus 85 ~g~id~lv~nA 95 (260)
T PRK08416 85 FDRVDFFISNA 95 (260)
T ss_pred cCCccEEEECc
Confidence 35678898875
No 422
>PRK09186 flagellin modification protein A; Provisional
Probab=74.83 E-value=28 Score=31.81 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=48.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~-~~~~~l~~~~~ 213 (371)
.+++||=.|++.|. ++..|++.|.+|+.+..+++-.+.+.+.+.. ...+.++.+|+.+..-- ........
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~--- 79 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAE--- 79 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHH---
Confidence 46788888875332 3444455688999999988776665555422 12466778998874321 11111111
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|.+|.|.
T Consensus 80 ~~~~id~vi~~A 91 (256)
T PRK09186 80 KYGKIDGAVNCA 91 (256)
T ss_pred HcCCccEEEECC
Confidence 124578888774
No 423
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=74.01 E-value=9.5 Score=38.33 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCEEEEEcCcccHHHHHHHHh--C-CeEEEEeCCHHHHHHHHHHhccCC----CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA--G-ATVLAIEKDQHMVGLVRERFASID----QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--~-~~V~aIE~d~~~i~~a~~~~~~~~----~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+-+|||.=+|+|.=+...+.. + .+|++-|+|++.++..++|++.++ .+++.+.|+..+-.. .
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-----------~ 118 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-----------R 118 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-----------S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-----------c
Confidence 348999999999998888876 2 589999999999999999987553 478888998775321 2
Q ss_pred CCCeeEEEecCCCcccHHHHH
Q 017450 215 SSGFAKVVANIPFNISTDVIK 235 (371)
Q Consensus 215 ~~~~d~VVaNlPy~iss~il~ 235 (371)
...||+|=-+ ||.-++|.+.
T Consensus 119 ~~~fD~IDlD-PfGSp~pfld 138 (377)
T PF02005_consen 119 QERFDVIDLD-PFGSPAPFLD 138 (377)
T ss_dssp TT-EEEEEE---SS--HHHHH
T ss_pred cccCCEEEeC-CCCCccHhHH
Confidence 3557766332 5655555554
No 424
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.97 E-value=22 Score=37.77 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=50.4
Q ss_pred HhcCCCCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHHHHHHHHHHhcc----------CCCeEEEEcccccchh
Q 017450 136 AAAVQEGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQHMVGLVRERFAS----------IDQLKVLQEDFVKCHI 201 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~~i~~a~~~~~~----------~~~v~vi~gD~~~~~~ 201 (371)
..+.+.+++||=.|++ |.++..+ ++.|.+|+++.++..-...+.+.+.. ..++.++.+|+.+.+.
T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3445577888888864 5555544 44588999999998766544433211 1258899999987532
Q ss_pred hhhhhhHHHhhccCCCeeEEEecCC
Q 017450 202 RSHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 202 ~~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
- .. ..+..|+||.|.-
T Consensus 153 I---~~------aLggiDiVVn~AG 168 (576)
T PLN03209 153 I---GP------ALGNASVVICCIG 168 (576)
T ss_pred H---HH------HhcCCCEEEEccc
Confidence 1 11 1245788887753
No 425
>PRK08324 short chain dehydrogenase; Validated
Probab=73.75 E-value=23 Score=38.29 Aligned_cols=83 Identities=20% Similarity=0.242 Sum_probs=51.7
Q ss_pred CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh-ccCC
Q 017450 141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~~ 216 (371)
.+++||=.|++. |. ++..+++.|.+|+++++++.-.+.+.+.+....++.++.+|..+...-. .+++.. ...+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~---~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQ---AAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHH---HHHHHHHHHcC
Confidence 467899888643 33 3344455688999999998877666555443346888889987643211 111110 1124
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|+||.|.-
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 426
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=73.68 E-value=12 Score=35.34 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCH
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQ 173 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~ 173 (371)
...+|||+|+|+|--+..++.. +.+|+.-|.-.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~ 119 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK 119 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh
Confidence 3568999999999777777764 56776666543
No 427
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=73.55 E-value=29 Score=31.81 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=46.9
Q ss_pred CCEEEEEcCcccHHH----HHHHHhCCeEEEEeCCHHHHHHHHHHhcc-C--CCeEEEEcccccchhhhh-hhhHHHhhc
Q 017450 142 GDIVLEIGPGTGSLT----NVLLNAGATVLAIEKDQHMVGLVRERFAS-I--DQLKVLQEDFVKCHIRSH-MLSLFERRK 213 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt----~~La~~~~~V~aIE~d~~~i~~a~~~~~~-~--~~v~vi~gD~~~~~~~~~-~~~l~~~~~ 213 (371)
+++||=.|.+ |.++ ..|++.|++|+.++.+..-.+.+.+.+.. . .++.++.+|+.+...-.. ...+.+
T Consensus 2 ~k~ilItG~~-~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~--- 77 (259)
T PRK12384 2 NQVAVVIGGG-QTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDE--- 77 (259)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHH---
Confidence 3578888854 4444 44555688999999987655544433321 1 357888999876432111 111111
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
..+..|.+|.|.
T Consensus 78 ~~~~id~vv~~a 89 (259)
T PRK12384 78 IFGRVDLLVYNA 89 (259)
T ss_pred HcCCCCEEEECC
Confidence 124578888765
No 428
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=73.25 E-value=29 Score=31.61 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=47.1
Q ss_pred EEEEEcCcccHHHH----HHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhccCCC
Q 017450 144 IVLEIGPGTGSLTN----VLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKSSSG 217 (371)
Q Consensus 144 ~VLEIG~G~G~lt~----~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~~ 217 (371)
++|=.|+ +|.++. .|++.|.+|+.++.++...+.+.+.+... .++.++.+|..+...- .....+.+ ..+.
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~~~~ 77 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAE---KFGG 77 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH---HcCC
Confidence 4666775 344444 44556889999999876655554444332 3678888998764321 11111111 2245
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|...
T Consensus 78 id~vi~~ag~ 87 (254)
T TIGR02415 78 FDVMVNNAGV 87 (254)
T ss_pred CCEEEECCCc
Confidence 7888887654
No 429
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.09 E-value=30 Score=31.82 Aligned_cols=83 Identities=13% Similarity=0.139 Sum_probs=47.0
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCC------------HHHHHHHHHHhccC-CCeEEEEcccccchhh
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD------------QHMVGLVRERFASI-DQLKVLQEDFVKCHIR 202 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d------------~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~ 202 (371)
.+++||=.|++ .|. ++..|++.|.+|+.++.+ +.... +...+... .++.++..|+.+..--
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCCeEEEEECCCCCHHHH
Confidence 35789999974 443 455666678899999765 22222 22223222 3688889998764422
Q ss_pred hhhhhHHHhhccCCCeeEEEecCC
Q 017450 203 SHMLSLFERRKSSSGFAKVVANIP 226 (371)
Q Consensus 203 ~~~~~l~~~~~~~~~~d~VVaNlP 226 (371)
....+.+. ...+..|.||.|.-
T Consensus 83 ~~~~~~~~--~~~g~id~vi~~ag 104 (256)
T PRK12748 83 NRVFYAVS--ERLGDPSILINNAA 104 (256)
T ss_pred HHHHHHHH--HhCCCCCEEEECCC
Confidence 11111111 12246788887753
No 430
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=73.08 E-value=32 Score=32.53 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhc
Q 017450 140 QEGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFA 184 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~ 184 (371)
..+++|+=+|+| |. ....+++.|.+|+.++++++-.+.+.+.+.
T Consensus 115 ~~~k~vliiGaG-g~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~ 161 (270)
T TIGR00507 115 RPNQRVLIIGAG-GAARAVALPLLKADCNVIIANRTVSKAEELAERFQ 161 (270)
T ss_pred ccCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 356789999997 43 222334457799999999776665555544
No 431
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.04 E-value=22 Score=33.07 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCEEEEEcC----cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGP----GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~----G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|. |.|. ++..+++.|++|+.++...+..+.+.+.....+....+..|+.+.+--+...+... ...
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLG--QHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHH--HHh
Confidence 4678999995 3343 45556667899988765433223332222222333456788876542211111111 123
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|++|.|.
T Consensus 83 g~iD~lvnnA 92 (260)
T PRK06997 83 DGLDGLVHSI 92 (260)
T ss_pred CCCcEEEEcc
Confidence 5789999885
No 432
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=72.66 E-value=3.4 Score=42.50 Aligned_cols=79 Identities=22% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCCEEEEEcCcccHHHHHHHHh-C-CeEEEEeCCHHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNA-G-ATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~-~-~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
.+..+|=||.|.|.++..+... . ..+++||+|+.+.+.+..++.-. .+.+++..|.++.-.. ....-.+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~-----~~k~~~~~~ 369 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQR-----TAKSQQEDI 369 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHH-----Hhhcccccc
Confidence 3457999999999999888665 3 68999999999999999998632 2456666776654221 111001345
Q ss_pred CeeEEEec
Q 017450 217 GFAKVVAN 224 (371)
Q Consensus 217 ~~d~VVaN 224 (371)
.||++...
T Consensus 370 ~~dvl~~d 377 (482)
T KOG2352|consen 370 CPDVLMVD 377 (482)
T ss_pred CCcEEEEE
Confidence 68888754
No 433
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=72.64 E-value=13 Score=28.73 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=20.0
Q ss_pred CCCCCEEEEEcCcccH-HHHHHHHh---CCeEEEEeCCH
Q 017450 139 VQEGDIVLEIGPGTGS-LTNVLLNA---GATVLAIEKDQ 173 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~-lt~~La~~---~~~V~aIE~d~ 173 (371)
...+++||=|||-+|+ |+..++.. |++.++|-.+.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 3456899999999998 55445443 56788876553
No 434
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.42 E-value=34 Score=31.05 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCCEEEEEcCcc--cH-HHHHHHHhCCeEEEEeCCH-HHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGT--GS-LTNVLLNAGATVLAIEKDQ-HMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~--G~-lt~~La~~~~~V~aIE~d~-~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~ 215 (371)
.++++|=.|++. |. +...+++.|.+|+++..+. ...+.+...+... .++.++.+|+.+...-....+... ...
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAR--EEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH--HhC
Confidence 467899888643 32 3334445688999988764 2333333333222 367888999887542211111111 112
Q ss_pred CCeeEEEecCC
Q 017450 216 SGFAKVVANIP 226 (371)
Q Consensus 216 ~~~d~VVaNlP 226 (371)
+..|.+|.|..
T Consensus 83 ~~~d~vi~~ag 93 (248)
T PRK07806 83 GGLDALVLNAS 93 (248)
T ss_pred CCCcEEEECCC
Confidence 45788887753
No 435
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=72.30 E-value=5.1 Score=38.82 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHhccC------CCeEEEEcccccchhhhhhhhHHH
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI------DQLKVLQEDFVKCHIRSHMLSLFE 210 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~~--~~V~aIE~d~~~i~~a~~~~~~~------~~v~vi~gD~~~~~~~~~~~~l~~ 210 (371)
+..+++||=||-|-|...+..+.+. .++.-+|+|...++..++.++.. +++.++-||...+--.
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~-------- 190 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLED-------- 190 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHH--------
Confidence 3467899999999999888777763 47999999999999988887642 4899999998765321
Q ss_pred hhccCCCeeEEEec
Q 017450 211 RRKSSSGFAKVVAN 224 (371)
Q Consensus 211 ~~~~~~~~d~VVaN 224 (371)
....++|+|+..
T Consensus 191 --~~~~~~dVii~d 202 (337)
T KOG1562|consen 191 --LKENPFDVIITD 202 (337)
T ss_pred --hccCCceEEEEe
Confidence 234678888753
No 436
>PRK05599 hypothetical protein; Provisional
Probab=72.23 E-value=30 Score=31.80 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=48.3
Q ss_pred EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
.+|=.|++.|. ++..++ .|.+|+.+..+++-.+.+.+.+...+ .+.++.+|+.+..--....+... ...+..
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~--~~~g~i 78 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQ--ELAGEI 78 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHH--HhcCCC
Confidence 46666776554 334444 48899999999887776666554433 47788899877543221111111 123568
Q ss_pred eEEEecCC
Q 017450 219 AKVVANIP 226 (371)
Q Consensus 219 d~VVaNlP 226 (371)
|.+|.|.-
T Consensus 79 d~lv~nag 86 (246)
T PRK05599 79 SLAVVAFG 86 (246)
T ss_pred CEEEEecC
Confidence 88887753
No 437
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=72.13 E-value=35 Score=32.82 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCEEEEEcCcccH---HHHHHHHhC-CeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAG-ATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~-~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
++++|=.|++.|. ++..|++.| .+|+.+..+++-.+.+.+.+... .++.++.+|..+..--....+.+. ...+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~--~~~~ 80 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFR--ESGR 80 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHH--HhCC
Confidence 4578878876544 445556678 89999999887666555544322 357778888876542211111111 1134
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|.+|.|.-
T Consensus 81 ~iD~lI~nAG 90 (314)
T TIGR01289 81 PLDALVCNAA 90 (314)
T ss_pred CCCEEEECCC
Confidence 6889998853
No 438
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.11 E-value=9 Score=40.05 Aligned_cols=44 Identities=25% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~ 182 (371)
..++++|+=+|+|. |..+...++. |++|+++|.+++..+.+++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 34789999999996 6666666665 88999999999999988873
No 439
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=71.76 E-value=35 Score=31.16 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=44.0
Q ss_pred EEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh-ccCCCe
Q 017450 144 IVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR-KSSSGF 218 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~~~~ 218 (371)
+||=+|++ |.++.. +++.|.+|++++.+++-++.+..... .++.++.+|+.+..--. .+++.. ...+..
T Consensus 2 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~i~---~~~~~~~~~~~~i 75 (248)
T PRK10538 2 IVLVTGAT-AGFGECITRRFIQQGHKVIATGRRQERLQELKDELG--DNLYIAQLDVRNRAAIE---EMLASLPAEWRNI 75 (248)
T ss_pred EEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--cceEEEEecCCCHHHHH---HHHHHHHHHcCCC
Confidence 45556654 344444 44568899999999876655544432 36788899987753211 111110 112457
Q ss_pred eEEEecC
Q 017450 219 AKVVANI 225 (371)
Q Consensus 219 d~VVaNl 225 (371)
|.+|.|.
T Consensus 76 d~vi~~a 82 (248)
T PRK10538 76 DVLVNNA 82 (248)
T ss_pred CEEEECC
Confidence 8888764
No 440
>PRK07201 short chain dehydrogenase; Provisional
Probab=71.66 E-value=27 Score=37.19 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhccCC
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKSSS 216 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~ 216 (371)
++++|=.|.+.|. ++..+++.|.+|++++.+++-.+.+.+.+... +++.++.+|+.+..--+. ...+.+ ..+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~---~~g 447 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILA---EHG 447 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH---hcC
Confidence 5678888865433 34445556899999999988776665554332 378888999887542211 111111 234
Q ss_pred CeeEEEecCCC
Q 017450 217 GFAKVVANIPF 227 (371)
Q Consensus 217 ~~d~VVaNlPy 227 (371)
..|.+|.|.-+
T Consensus 448 ~id~li~~Ag~ 458 (657)
T PRK07201 448 HVDYLVNNAGR 458 (657)
T ss_pred CCCEEEECCCC
Confidence 67899987643
No 441
>PRK06114 short chain dehydrogenase; Provisional
Probab=71.08 E-value=37 Score=31.20 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCCHH-HHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKDQH-MVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d~~-~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~ 213 (371)
.++++|=.|.+.| ++..+ ++.|++|+.++.++. ..+.+.+.+... .++..+.+|+.+..-- ....... .
T Consensus 7 ~~k~~lVtG~s~g-IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~---~ 82 (254)
T PRK06114 7 DGQVAFVTGAGSG-IGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTE---A 82 (254)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH---H
Confidence 4678888885544 44444 445889999998642 333333333332 3677888998764321 1111111 1
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|.+|.|.-
T Consensus 83 ~~g~id~li~~ag 95 (254)
T PRK06114 83 ELGALTLAVNAAG 95 (254)
T ss_pred HcCCCCEEEECCC
Confidence 2356789998754
No 442
>PRK06484 short chain dehydrogenase; Validated
Probab=70.81 E-value=29 Score=35.69 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~ 216 (371)
.++.+|=.|.+.|. ++..|++.|.+|+.++.++.-.+.+.+... .++..+.+|+.+..-- .......+ ..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG--DEHLSVQADITDEAAVESAFAQIQA---RWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEccCCCHHHHHHHHHHHHH---HcC
Confidence 45788888876653 455566678999999999877766655442 3566778888765321 11111111 235
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|++|.|-
T Consensus 343 ~id~li~nA 351 (520)
T PRK06484 343 RLDVLVNNA 351 (520)
T ss_pred CCCEEEECC
Confidence 689999874
No 443
>PRK12743 oxidoreductase; Provisional
Probab=70.23 E-value=38 Score=31.15 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=46.3
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEe-CCHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIE-KDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS 214 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE-~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~ 214 (371)
+++||=.|++ |.++..++ +.|.+|+.+. .+.+..+.+.+..... .++.++.+|..+..--+. ...+.+ .
T Consensus 2 ~k~vlItGas-~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~ 77 (256)
T PRK12743 2 AQVAIVTASD-SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQ---R 77 (256)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---H
Confidence 4578888865 44454444 4588988775 4555555444444333 378899999877542111 111111 2
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
.+..|.+|.|.-
T Consensus 78 ~~~id~li~~ag 89 (256)
T PRK12743 78 LGRIDVLVNNAG 89 (256)
T ss_pred cCCCCEEEECCC
Confidence 245788887753
No 444
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=70.10 E-value=13 Score=33.96 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=42.7
Q ss_pred cccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh-hhHHHhhccC-CCeeEEEecCC
Q 017450 151 GTGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM-LSLFERRKSS-SGFAKVVANIP 226 (371)
Q Consensus 151 G~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~-~~l~~~~~~~-~~~d~VVaNlP 226 (371)
|.|. .+..+++.|++|+.++.+.+..+...+.+......+++..|+.+-.--+.. ....+ .. +..|.+|.|..
T Consensus 7 GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~---~~~g~iD~lV~~a~ 82 (241)
T PF13561_consen 7 GIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVE---RFGGRIDILVNNAG 82 (241)
T ss_dssp HHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHH---HHCSSESEEEEEEE
T ss_pred ChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHh---hcCCCeEEEEeccc
Confidence 3444 456667779999999999987533333332212345789998754322211 11221 22 67899887753
No 445
>PRK08278 short chain dehydrogenase; Provisional
Probab=70.02 E-value=37 Score=31.75 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHH-------HHHHHHHhccC-CCeEEEEcccccchhhhhh-hhH
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHM-------VGLVRERFASI-DQLKVLQEDFVKCHIRSHM-LSL 208 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~-------i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~-~~l 208 (371)
.++++|=.|++.|. ++..++++|.+|+.++.+..- +..+.+.+... .++.++.+|+.+..--... ..+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 84 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA 84 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 45789988876543 444555668899999987531 22222333222 3688888998775422111 111
Q ss_pred HHhhccCCCeeEEEecCC
Q 017450 209 FERRKSSSGFAKVVANIP 226 (371)
Q Consensus 209 ~~~~~~~~~~d~VVaNlP 226 (371)
.+ ..+..|.+|.|..
T Consensus 85 ~~---~~g~id~li~~ag 99 (273)
T PRK08278 85 VE---RFGGIDICVNNAS 99 (273)
T ss_pred HH---HhCCCCEEEECCC
Confidence 11 1246788887754
No 446
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.83 E-value=16 Score=34.79 Aligned_cols=45 Identities=33% Similarity=0.522 Sum_probs=36.0
Q ss_pred hcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450 137 AAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 137 l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~ 181 (371)
..+.++++||..|+| .|..+..+++. |.+|++++.+++..+.+++
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346678899998876 47777777775 8899999999998888755
No 447
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=69.68 E-value=2.2 Score=40.99 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh
Q 017450 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR 202 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~ 202 (371)
.+..++|+|||.|-.+..= ..+.+++.|+...++..++.. +...+..+|+++++..
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~----~~~~~~~ad~l~~p~~ 100 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS----GGDNVCRADALKLPFR 100 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC----CCceeehhhhhcCCCC
Confidence 4789999999999765321 245799999999988887654 2226888999998864
No 448
>PRK06198 short chain dehydrogenase; Provisional
Probab=69.48 E-value=36 Score=31.17 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=46.6
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCe-EEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGAT-VLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~-V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.+++||=.|++ |.++..+ ++.|.+ |+.++.++.-.......+... .++.++..|+.+.+.-....+... ..
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 81 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD--EA 81 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH--HH
Confidence 46788888864 3344444 445777 999999876555443333322 257778889876432111111111 11
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|.+|.|.
T Consensus 82 ~g~id~li~~a 92 (260)
T PRK06198 82 FGRLDALVNAA 92 (260)
T ss_pred hCCCCEEEECC
Confidence 24578888764
No 449
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.28 E-value=43 Score=30.13 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCEEEEEcCcccHHHHHH----HHhCCeEEEE-eCCHHHHHHHHHHhccC-CCeEEEEcccccchhh-hhhhhHHHhhcc
Q 017450 142 GDIVLEIGPGTGSLTNVL----LNAGATVLAI-EKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIR-SHMLSLFERRKS 214 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~L----a~~~~~V~aI-E~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~-~~~~~l~~~~~~ 214 (371)
+++||=+|+ +|.++..+ ++.|.+|+.+ +.+++-.+.+...+... .++.++.+|+.+..-- .....+.+ .
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~ 80 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVE---K 80 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---H
Confidence 457888885 45555444 4558899988 98877665555544332 3688899999875421 11111111 1
Q ss_pred CCCeeEEEecCCC
Q 017450 215 SSGFAKVVANIPF 227 (371)
Q Consensus 215 ~~~~d~VVaNlPy 227 (371)
.+..|.||.|..+
T Consensus 81 ~~~id~vi~~ag~ 93 (247)
T PRK05565 81 FGKIDILVNNAGI 93 (247)
T ss_pred hCCCCEEEECCCc
Confidence 2457888877644
No 450
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=69.18 E-value=38 Score=31.12 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhccC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRKSS 215 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~ 215 (371)
.++++|=.|++.|. ++..+++.|++|++++.++. +.+.+.+... .++..+..|..+..--. ....+.+ ..
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 83 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVA---EF 83 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH---Hh
Confidence 46788888875443 34445556899999887542 1111222222 35778888887643211 1111111 22
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 84 ~~~D~li~~A 93 (253)
T PRK08993 84 GHIDILVNNA 93 (253)
T ss_pred CCCCEEEECC
Confidence 4678888775
No 451
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=68.69 E-value=5.8 Score=35.63 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=23.3
Q ss_pred EEEEEcCcc-cH-HHHHHHHhCCeEEEEeCCHHHHHHHHH
Q 017450 144 IVLEIGPGT-GS-LTNVLLNAGATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 144 ~VLEIG~G~-G~-lt~~La~~~~~V~aIE~d~~~i~~a~~ 181 (371)
+|-=||.|- |. ++..+|+.|.+|+|+|+|++.++.+++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh
Confidence 344565553 22 345556678999999999998887764
No 452
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.66 E-value=30 Score=33.40 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--C-CeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--D-QLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~-~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.++.||==||-+|. ++..++++|.+++-+-...+-.+...+.+... + ++.++.+|..+.+.-.-..++.. ..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~--~~ 88 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAI--RH 88 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHH--Hh
Confidence 57788888987775 66777778987666666555555443333221 2 58999999998764433333322 23
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|++|.|-
T Consensus 89 fg~vDvLVNNA 99 (282)
T KOG1205|consen 89 FGRVDVLVNNA 99 (282)
T ss_pred cCCCCEEEecC
Confidence 57789999884
No 453
>PRK06482 short chain dehydrogenase; Provisional
Probab=68.46 E-value=43 Score=31.14 Aligned_cols=77 Identities=22% Similarity=0.249 Sum_probs=47.4
Q ss_pred CEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhh-hhhhHHHhhccCCC
Q 017450 143 DIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS-HMLSLFERRKSSSG 217 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~-~~~~l~~~~~~~~~ 217 (371)
++||=.|++ |.++.. |++.|.+|++++.+++.++.+++... .++.++.+|+.+...-. ...++.+ ..+.
T Consensus 3 k~vlVtGas-g~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 76 (276)
T PRK06482 3 KTWFITGAS-SGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG--DRLWVLQLDVTDSAAVRAVVDRAFA---ALGR 76 (276)
T ss_pred CEEEEecCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--CceEEEEccCCCHHHHHHHHHHHHH---HcCC
Confidence 467877764 554444 44568899999999877666555432 36888999998754211 1111111 1245
Q ss_pred eeEEEecC
Q 017450 218 FAKVVANI 225 (371)
Q Consensus 218 ~d~VVaNl 225 (371)
.|.||.|-
T Consensus 77 id~vi~~a 84 (276)
T PRK06482 77 IDVVVSNA 84 (276)
T ss_pred CCEEEECC
Confidence 78888764
No 454
>PRK06179 short chain dehydrogenase; Provisional
Probab=68.44 E-value=30 Score=32.05 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=45.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
+++||=.|+ +|.++..++ +.|.+|++++.++.... ...+++++.+|..+..--+...+.+. ...+.
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~--~~~g~ 73 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVI--ARAGR 73 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHH--HhCCC
Confidence 467888885 455555554 45889999999865332 12367889999876432111111111 12356
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|.+|.|--+
T Consensus 74 ~d~li~~ag~ 83 (270)
T PRK06179 74 IDVLVNNAGV 83 (270)
T ss_pred CCEEEECCCC
Confidence 8999987543
No 455
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=68.41 E-value=39 Score=30.06 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=45.0
Q ss_pred CCCEEEEEcC-c-ccH-HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGP-G-TGS-LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~-G-~G~-lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
++.+++=+|+ | .|. .+..+++.+++|+.+.++.+-.+...+.+....+.++...|..+.... .+. ...
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~~------~~~ 97 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAAR---AAA------IKG 97 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHH---HHH------Hhc
Confidence 5678999985 3 453 344455567899999998776666555543222344555555432210 011 134
Q ss_pred eeEEEecCCC
Q 017450 218 FAKVVANIPF 227 (371)
Q Consensus 218 ~d~VVaNlPy 227 (371)
.|+||+..|.
T Consensus 98 ~diVi~at~~ 107 (194)
T cd01078 98 ADVVFAAGAA 107 (194)
T ss_pred CCEEEECCCC
Confidence 6888876664
No 456
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.40 E-value=42 Score=30.42 Aligned_cols=83 Identities=11% Similarity=0.200 Sum_probs=46.2
Q ss_pred CCCEEEEEcCcccHHHH----HHHHhCCeEEE-EeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTN----VLLNAGATVLA-IEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~----~La~~~~~V~a-IE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
+++++|=.|.+ |.++. .+++.|.+|+. ...+....+.+.+.+... .++.++.+|..+...-....+-.. ..
T Consensus 3 ~~~~vlItGa~-g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~ 79 (250)
T PRK08063 3 SGKVALVTGSS-RGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQID--EE 79 (250)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 35678877775 44444 44556888776 466666555444444332 367888899876432111111111 11
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
.+..|++|.|..
T Consensus 80 ~~~id~vi~~ag 91 (250)
T PRK08063 80 FGRLDVFVNNAA 91 (250)
T ss_pred cCCCCEEEECCC
Confidence 245788888753
No 457
>PRK06484 short chain dehydrogenase; Validated
Probab=68.07 E-value=33 Score=35.34 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++.|. ++..|++.|++|+.++.+..-.+.+.+.+. .++..+..|..+..-- .....+.+ ..+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG--PDHHALAMDVSDEAQIREGFEQLHR---EFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--CceeEEEeccCCHHHHHHHHHHHHH---HhC
Confidence 46788888887763 455566679999999999877665555442 2567788887764321 11111111 225
Q ss_pred CeeEEEecCC
Q 017450 217 GFAKVVANIP 226 (371)
Q Consensus 217 ~~d~VVaNlP 226 (371)
..|++|.|.-
T Consensus 79 ~iD~li~nag 88 (520)
T PRK06484 79 RIDVLVNNAG 88 (520)
T ss_pred CCCEEEECCC
Confidence 6899998853
No 458
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=67.86 E-value=60 Score=32.87 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCcccHHH-----HHHHHhCCeEEEEeCCHHHH------------HHHHHHhccCC-CeEEEEcccccchh
Q 017450 140 QEGDIVLEIGPGTGSLT-----NVLLNAGATVLAIEKDQHMV------------GLVRERFASID-QLKVLQEDFVKCHI 201 (371)
Q Consensus 140 ~~~~~VLEIG~G~G~lt-----~~La~~~~~V~aIE~d~~~i------------~~a~~~~~~~~-~v~vi~gD~~~~~~ 201 (371)
..++++|=+|+++|.-. ..+ +.|++++++..+.+-. +.+.+.....+ .+..+.+|+.+-.-
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 35689999999887733 345 5688988887543111 11222222223 45678899987543
Q ss_pred hhhhhhHHHhhccCCCeeEEEecCCCc
Q 017450 202 RSHMLSLFERRKSSSGFAKVVANIPFN 228 (371)
Q Consensus 202 ~~~~~~l~~~~~~~~~~d~VVaNlPy~ 228 (371)
.+...+.+. ...+..|++|.|+.+.
T Consensus 118 v~~lie~I~--e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIK--QDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHH--HhcCCCCEEEECCccC
Confidence 322222222 1236789999987664
No 459
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=67.82 E-value=48 Score=31.79 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCEEEEEcCcccHH---HHHHHHhCC-eEEEEeCCH---HHHHHHHHHhcc-CCCeEEEEcccc
Q 017450 141 EGDIVLEIGPGTGSL---TNVLLNAGA-TVLAIEKDQ---HMVGLVRERFAS-IDQLKVLQEDFV 197 (371)
Q Consensus 141 ~~~~VLEIG~G~G~l---t~~La~~~~-~V~aIE~d~---~~i~~a~~~~~~-~~~v~vi~gD~~ 197 (371)
.++++|=+|+| |.- +..|++.|+ +|+.+++++ +..+.+.+.+.. .+.+.+...|..
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~ 188 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLN 188 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechh
Confidence 56789999997 552 222345576 499999985 333333333322 123444445543
No 460
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.75 E-value=20 Score=34.90 Aligned_cols=46 Identities=33% Similarity=0.566 Sum_probs=36.1
Q ss_pred HhcCCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450 136 AAAVQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 136 ~l~~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~ 181 (371)
...+.++++||=.|+|. |.++..+++. |.+|++++.+++..+.+++
T Consensus 161 ~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 161 QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35667889999999864 6666666665 7799999999998888865
No 461
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=67.64 E-value=24 Score=35.36 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHH---HHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVG---LVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~---~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
.+.+||=+| |+|+++..+++ .|.+|+++..+..-.. ...+.....++++++.+|+.+.+.-. .+++.
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~---~~~~~-- 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLR---KVLFS-- 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHH---HHHHH--
Confidence 466899888 67877766654 5889999998865322 11111112347899999998754211 11110
Q ss_pred cCCCeeEEEecC
Q 017450 214 SSSGFAKVVANI 225 (371)
Q Consensus 214 ~~~~~d~VVaNl 225 (371)
....+|.||.+.
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 011578888654
No 462
>PRK05693 short chain dehydrogenase; Provisional
Probab=67.44 E-value=38 Score=31.47 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=43.4
Q ss_pred CEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhh-hhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIR-SHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~-~~~~~l~~~~~~~~~~ 218 (371)
+++|=.|++.|. ++..+++.|.+|++++.++.-.+.+.. .++..+.+|..+...- .....+.+ ..+..
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~---~~~~i 73 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA-----AGFTAVQLDVNDGAALARLAEELEA---EHGGL 73 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----CCCeEEEeeCCCHHHHHHHHHHHHH---hcCCC
Confidence 357777764332 334444568899999999776554432 1467778888764321 11111111 22467
Q ss_pred eEEEecCC
Q 017450 219 AKVVANIP 226 (371)
Q Consensus 219 d~VVaNlP 226 (371)
|.+|.|.-
T Consensus 74 d~vi~~ag 81 (274)
T PRK05693 74 DVLINNAG 81 (274)
T ss_pred CEEEECCC
Confidence 88987754
No 463
>PRK06940 short chain dehydrogenase; Provisional
Probab=67.03 E-value=49 Score=30.99 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=47.4
Q ss_pred CEEEEEcCcccHHHHHHHH---hCCeEEEEeCCHHHHHHHHHHhccCC-CeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 143 DIVLEIGPGTGSLTNVLLN---AGATVLAIEKDQHMVGLVRERFASID-QLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~La~---~~~~V~aIE~d~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
+.+|=-|+ |.++..+++ .|.+|+.++.++.-.+.+.+.+...+ ++.++.+|+.+..--. .+++.....+..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~---~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVK---ALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHH---HHHHHHHhcCCC
Confidence 35555564 345555554 47899999998776655554444332 6778889987754221 122111112568
Q ss_pred eEEEecCCC
Q 017450 219 AKVVANIPF 227 (371)
Q Consensus 219 d~VVaNlPy 227 (371)
|.+|.|.-.
T Consensus 78 d~li~nAG~ 86 (275)
T PRK06940 78 TGLVHTAGV 86 (275)
T ss_pred CEEEECCCc
Confidence 999988643
No 464
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.82 E-value=52 Score=29.45 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=49.8
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchh-hhhhhhHHHhhccC
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHI-RSHMLSLFERRKSS 215 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~-~~~~~~l~~~~~~~ 215 (371)
+++||=.|+ +|.++..++ ++|.+|+++..++...+.....+... .++.++.+|+.+..- .....++.. ..
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~ 80 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVE---AF 80 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH---Hh
Confidence 468888886 566666554 45889999999987666555444432 367888899876432 111111111 12
Q ss_pred CCeeEEEecCCC
Q 017450 216 SGFAKVVANIPF 227 (371)
Q Consensus 216 ~~~d~VVaNlPy 227 (371)
+..|.||.+.-+
T Consensus 81 ~~id~vi~~ag~ 92 (246)
T PRK05653 81 GALDILVNNAGI 92 (246)
T ss_pred CCCCEEEECCCc
Confidence 456888876533
No 465
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=66.76 E-value=42 Score=36.38 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=50.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhcc---CCCeEEEEcccccchhh-hhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFAS---IDQLKVLQEDFVKCHIR-SHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~---~~~v~vi~gD~~~~~~~-~~~~~l~~~~~ 213 (371)
.+++||=.|++.|. ++..|++.|++|++++++....+.+.+.+.. .+++..+.+|+.+...- ........
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~--- 489 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVAL--- 489 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHH---
Confidence 46789988875443 3344555689999999998776655554431 12567788998764321 11111111
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|++|.|.-
T Consensus 490 ~~g~iDilV~nAG 502 (676)
T TIGR02632 490 AYGGVDIVVNNAG 502 (676)
T ss_pred hcCCCcEEEECCC
Confidence 2246889988854
No 466
>PRK08703 short chain dehydrogenase; Provisional
Probab=66.60 E-value=47 Score=30.03 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=37.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccC--CCeEEEEccccc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASI--DQLKVLQEDFVK 198 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~--~~v~vi~gD~~~ 198 (371)
++++||=.|++.|. ++..+++.|.+|++++.++.-.+.+.+.+... ..+.++..|..+
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 46789999964332 33444556889999999987666555544322 245667777754
No 467
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.60 E-value=51 Score=30.34 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=46.5
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCC-----------HHHHHHHHHHhccCC-CeEEEEcccccchhhh
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKD-----------QHMVGLVRERFASID-QLKVLQEDFVKCHIRS 203 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d-----------~~~i~~a~~~~~~~~-~v~vi~gD~~~~~~~~ 203 (371)
++++||=.|++ .|. ++..+++.|++|+.+.+. ..-...+.+.+...+ ++..+.+|+.+..--.
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK 84 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence 57889999984 554 455666678888876421 111222333333333 6778888887643211
Q ss_pred -hhhhHHHhhccCCCeeEEEecCCC
Q 017450 204 -HMLSLFERRKSSSGFAKVVANIPF 227 (371)
Q Consensus 204 -~~~~l~~~~~~~~~~d~VVaNlPy 227 (371)
....+.+ ..+..|.+|.|.-.
T Consensus 85 ~~~~~~~~---~~g~id~li~~ag~ 106 (256)
T PRK12859 85 ELLNKVTE---QLGYPHILVNNAAY 106 (256)
T ss_pred HHHHHHHH---HcCCCcEEEECCCC
Confidence 1111211 23457999988543
No 468
>PRK12828 short chain dehydrogenase; Provisional
Probab=66.45 E-value=56 Score=29.14 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=46.3
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
++++||=.|.+ |.++.. +++.|.+|++++.++.-.....+.... ..++++.+|+.+...-....+-.. ...+
T Consensus 6 ~~k~vlItGat-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 81 (239)
T PRK12828 6 QGKVVAITGGF-GGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-DALRIGGIDLVDPQAARRAVDEVN--RQFG 81 (239)
T ss_pred CCCEEEEECCC-CcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-cCceEEEeecCCHHHHHHHHHHHH--HHhC
Confidence 46788888854 444444 445688999999987644333322222 256777888876432111111111 1124
Q ss_pred CeeEEEecCCC
Q 017450 217 GFAKVVANIPF 227 (371)
Q Consensus 217 ~~d~VVaNlPy 227 (371)
..|.|+.|...
T Consensus 82 ~~d~vi~~ag~ 92 (239)
T PRK12828 82 RLDALVNIAGA 92 (239)
T ss_pred CcCEEEECCcc
Confidence 57888877543
No 469
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.36 E-value=23 Score=32.13 Aligned_cols=44 Identities=34% Similarity=0.584 Sum_probs=34.9
Q ss_pred CCCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450 139 VQEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 139 ~~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~ 182 (371)
..++++||-.|+|. |..+..+++. |.+|++++.++...+.+++.
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 36789999999985 6667667765 78999999998887777543
No 470
>PRK07775 short chain dehydrogenase; Provisional
Probab=66.15 E-value=58 Score=30.37 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=46.8
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhh-ccC
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERR-KSS 215 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~-~~~ 215 (371)
.+++|=.|++ |.++..++ ++|.+|+.+..+..-...+...+... +++.++.+|..+...-. .+++.. ...
T Consensus 10 ~~~vlVtGa~-g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~---~~~~~~~~~~ 85 (274)
T PRK07775 10 RRPALVAGAS-SGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVK---SFVAQAEEAL 85 (274)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH---HHHHHHHHhc
Confidence 4578888854 55555554 45889999988776555444443322 36778889987654211 111110 112
Q ss_pred CCeeEEEecC
Q 017450 216 SGFAKVVANI 225 (371)
Q Consensus 216 ~~~d~VVaNl 225 (371)
+..|.+|.|.
T Consensus 86 ~~id~vi~~A 95 (274)
T PRK07775 86 GEIEVLVSGA 95 (274)
T ss_pred CCCCEEEECC
Confidence 4578888765
No 471
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=66.04 E-value=31 Score=32.99 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhc--c-CCCeEEEEcccccch
Q 017450 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFA--S-IDQLKVLQEDFVKCH 200 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~--~-~~~v~vi~gD~~~~~ 200 (371)
.+++||=.| |+|+++..+++ .|.+|+++.+++........... . .++++++.+|+.+..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 467899888 56776666654 47899888777653332222211 1 136889999998754
No 472
>PRK12827 short chain dehydrogenase; Provisional
Probab=65.76 E-value=58 Score=29.34 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCCEEEEEcCcccHHHHH----HHHhCCeEEEEeC----CHHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHh
Q 017450 141 EGDIVLEIGPGTGSLTNV----LLNAGATVLAIEK----DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~----La~~~~~V~aIE~----d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
.+.+||=.|.. |.++.. |+++|.+|+.++. ++...+.+...+... .++.++.+|+.+...-....+.+.
T Consensus 5 ~~~~ilItGas-g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~- 82 (249)
T PRK12827 5 DSRRVLITGGS-GGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV- 82 (249)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH-
Confidence 35678877743 444444 4556889988764 344444444444332 378889999887543211111111
Q ss_pred hccCCCeeEEEecCC
Q 017450 212 RKSSSGFAKVVANIP 226 (371)
Q Consensus 212 ~~~~~~~d~VVaNlP 226 (371)
...+..|.||.|.-
T Consensus 83 -~~~~~~d~vi~~ag 96 (249)
T PRK12827 83 -EEFGRLDILVNNAG 96 (249)
T ss_pred -HHhCCCCEEEECCC
Confidence 11245788887753
No 473
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=65.74 E-value=26 Score=34.14 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=39.0
Q ss_pred CCCEEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccc
Q 017450 141 EGDIVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~ 199 (371)
.+.+||=.|. +|+++..+++ .|.+|++++.+..-.......+...++++++.+|+.+.
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEE 70 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCH
Confidence 4568998884 5776666655 58899999887654443333332234688899998764
No 474
>PRK09135 pteridine reductase; Provisional
Probab=65.65 E-value=58 Score=29.32 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=47.0
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCC-HHHHHHHHHHhccC--CCeEEEEcccccchhhhhhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKD-QHMVGLVRERFASI--DQLKVLQEDFVKCHIRSHMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d-~~~i~~a~~~~~~~--~~v~vi~gD~~~~~~~~~~~~l~~~~~ 213 (371)
.+++||=.|++ |.++..+ ++.|.+|++++.. +.-.+.....+... .++.++.+|..+...-........ .
T Consensus 5 ~~~~vlItGa~-g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--~ 81 (249)
T PRK09135 5 SAKVALITGGA-RRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACV--A 81 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH--H
Confidence 45689999964 5555554 4458899999975 33333333333221 257888999877542211111100 1
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|.||.|..
T Consensus 82 ~~~~~d~vi~~ag 94 (249)
T PRK09135 82 AFGRLDALVNNAS 94 (249)
T ss_pred HcCCCCEEEECCC
Confidence 1245788887753
No 475
>PRK12744 short chain dehydrogenase; Provisional
Probab=65.59 E-value=48 Score=30.40 Aligned_cols=82 Identities=13% Similarity=0.174 Sum_probs=43.7
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeCC----HHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHh
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEKD----QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFER 211 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d----~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~ 211 (371)
.+++||=.|++.| ++..+ ++.|.+|+.+..+ .+..+.+.+.+... .++.++.+|+.+..--....+...
T Consensus 7 ~~k~vlItGa~~g-IG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~- 84 (257)
T PRK12744 7 KGKVVLIAGGAKN-LGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK- 84 (257)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH-
Confidence 4578998886544 44444 4457887777542 23333333333222 367888999876532111111111
Q ss_pred hccCCCeeEEEecC
Q 017450 212 RKSSSGFAKVVANI 225 (371)
Q Consensus 212 ~~~~~~~d~VVaNl 225 (371)
...+..|.+|.|.
T Consensus 85 -~~~~~id~li~~a 97 (257)
T PRK12744 85 -AAFGRPDIAINTV 97 (257)
T ss_pred -HhhCCCCEEEECC
Confidence 1224678888774
No 476
>PRK08263 short chain dehydrogenase; Provisional
Probab=65.52 E-value=56 Score=30.39 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=46.7
Q ss_pred CCEEEEEcCcccHHHHHHH----HhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh-hhhhhhHHHhhccCC
Q 017450 142 GDIVLEIGPGTGSLTNVLL----NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI-RSHMLSLFERRKSSS 216 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La----~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~-~~~~~~l~~~~~~~~ 216 (371)
+++||=.|+ +|.++..++ +.|.+|++++.++.-.+.+.+... +.+.++.+|+.+..- ......+.+ ..+
T Consensus 3 ~k~vlItGa-sg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 76 (275)
T PRK08263 3 EKVWFITGA-SRGFGRAWTEAALERGDRVVATARDTATLADLAEKYG--DRLLPLALDVTDRAAVFAAVETAVE---HFG 76 (275)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcc--CCeeEEEccCCCHHHHHHHHHHHHH---HcC
Confidence 457888885 455554444 558899999999877665544432 367788888876432 111111111 124
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 77 ~~d~vi~~a 85 (275)
T PRK08263 77 RLDIVVNNA 85 (275)
T ss_pred CCCEEEECC
Confidence 678888774
No 477
>PRK06483 dihydromonapterin reductase; Provisional
Probab=64.76 E-value=50 Score=29.82 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=43.9
Q ss_pred CCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 142 GDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 142 ~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
++++|=.|++.|. ++..|++.|.+|+.++.++.-.. +..... ++.++.+|+.+.+--....+-.. ...+..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~--~~~~~i 75 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA-GAQCIQADFSTNAGIMAFIDELK--QHTDGL 75 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc-CCEEEEcCCCCHHHHHHHHHHHH--hhCCCc
Confidence 3578888876543 44555667899999998764321 111111 36778888876432111111111 122457
Q ss_pred eEEEecC
Q 017450 219 AKVVANI 225 (371)
Q Consensus 219 d~VVaNl 225 (371)
|.+|.|.
T Consensus 76 d~lv~~a 82 (236)
T PRK06483 76 RAIIHNA 82 (236)
T ss_pred cEEEECC
Confidence 8888875
No 478
>PRK07985 oxidoreductase; Provisional
Probab=64.71 E-value=51 Score=31.30 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCH--HHHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQ--HMVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~--~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~ 213 (371)
.++++|=.|.+.|. ++..|++.|++|+.+..+. +-.+.+.+..... .++.++.+|+.+..--. ......+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~--- 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK--- 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH---
Confidence 56789999965433 4555566789998887542 3333344333322 36778889987743211 1111111
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|.+|.|.-
T Consensus 125 ~~g~id~lv~~Ag 137 (294)
T PRK07985 125 ALGGLDIMALVAG 137 (294)
T ss_pred HhCCCCEEEECCC
Confidence 2355788887743
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=64.71 E-value=36 Score=34.43 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=37.1
Q ss_pred EEEEEcCcccHHHHHHHH----hCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccc
Q 017450 144 IVLEIGPGTGSLTNVLLN----AGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKC 199 (371)
Q Consensus 144 ~VLEIG~G~G~lt~~La~----~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~ 199 (371)
+|+=+|+ |..+..+++ .|..|+.+|.|++.++.+++.. .+.++.||+.+.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~----~~~~~~gd~~~~ 55 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL----DVRTVVGNGSSP 55 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc----CEEEEEeCCCCH
Confidence 4666766 676666665 4779999999999888776532 578889998764
No 480
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=64.60 E-value=6.3 Score=39.39 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHhccC---CCeEEEEcccccchhhhh
Q 017450 139 VQEGDIVLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDFVKCHIRSH 204 (371)
Q Consensus 139 ~~~~~~VLEIG~G~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~~~~---~~v~vi~gD~~~~~~~~~ 204 (371)
..++..++++|||.|....+++.. ++++++++.++.-+.......... .+-.++.+|+.+.+++++
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn 177 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN 177 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcc
Confidence 346778999999999999999986 579999999988887766654322 133447889988877643
No 481
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.45 E-value=39 Score=34.20 Aligned_cols=84 Identities=18% Similarity=0.305 Sum_probs=49.1
Q ss_pred CCCEEEEEcCcccHH--HHHHHHhCCeEEEEeCCH-HHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCC
Q 017450 141 EGDIVLEIGPGTGSL--TNVLLNAGATVLAIEKDQ-HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSG 217 (371)
Q Consensus 141 ~~~~VLEIG~G~G~l--t~~La~~~~~V~aIE~d~-~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~ 217 (371)
.+++|+=+|.|...+ +..|++.|++|+++|.+. ..+....+.+... +++++.+|..+-. .+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~--------------~~~ 68 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEF--------------LEG 68 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhH--------------hhc
Confidence 467899999876433 344455699999999985 3332222223222 5677777776521 134
Q ss_pred eeEEEecCCCcccHHHHHHhcc
Q 017450 218 FAKVVANIPFNISTDVIKQLLP 239 (371)
Q Consensus 218 ~d~VVaNlPy~iss~il~~Ll~ 239 (371)
+|.||.+.=.....+++.....
T Consensus 69 ~d~vv~~~g~~~~~~~~~~a~~ 90 (450)
T PRK14106 69 VDLVVVSPGVPLDSPPVVQAHK 90 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHHH
Confidence 7888876544444555544433
No 482
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=64.01 E-value=31 Score=31.74 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=49.1
Q ss_pred EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhh-hHHHhhccCCCee
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHML-SLFERRKSSSGFA 219 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~-~l~~~~~~~~~~d 219 (371)
.++--|.|.|. .+..|+..|++|..+|.|....+.....+..+++-.-..+|..+-.--+..+ +.. ...+.++
T Consensus 16 ~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~---k~~g~ps 92 (256)
T KOG1200|consen 16 VAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEME---KSLGTPS 92 (256)
T ss_pred eeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHH---HhcCCCc
Confidence 44445555554 5677778899999999999977777777766555455577776543222211 111 1235677
Q ss_pred EEEecC
Q 017450 220 KVVANI 225 (371)
Q Consensus 220 ~VVaNl 225 (371)
++|.+-
T Consensus 93 vlVncA 98 (256)
T KOG1200|consen 93 VLVNCA 98 (256)
T ss_pred EEEEcC
Confidence 777653
No 483
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=63.96 E-value=25 Score=33.03 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=34.1
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCe-EEEEeCCHHHHHHHHHH
Q 017450 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GAT-VLAIEKDQHMVGLVRER 182 (371)
Q Consensus 135 ~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~-V~aIE~d~~~i~~a~~~ 182 (371)
......++++||=+|+| .|.++..+++. |.+ |+++|.+++-.+.+++.
T Consensus 114 ~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred HhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 33445578899999875 35555666654 665 99999998888777663
No 484
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=63.86 E-value=66 Score=33.74 Aligned_cols=42 Identities=29% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCcc-cHHHHHHHHh-CCeEEEEeCCHHHHHHHHH
Q 017450 140 QEGDIVLEIGPGT-GSLTNVLLNA-GATVLAIEKDQHMVGLVRE 181 (371)
Q Consensus 140 ~~~~~VLEIG~G~-G~lt~~La~~-~~~V~aIE~d~~~i~~a~~ 181 (371)
.++.+|+=+|+|. |..+..++.. |+.|+++|.+++..+.++.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3578999999985 4555555554 8899999999998777765
No 485
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.79 E-value=64 Score=29.34 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=44.2
Q ss_pred CEEEEEcCcccHHHHHH----HHhCCeEEEEeCC-HHHHHHHHHHhccC-CCeEEEEcccccchhhhhhhhHHHhhccCC
Q 017450 143 DIVLEIGPGTGSLTNVL----LNAGATVLAIEKD-QHMVGLVRERFASI-DQLKVLQEDFVKCHIRSHMLSLFERRKSSS 216 (371)
Q Consensus 143 ~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~d-~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~ 216 (371)
+.||=.|+ +|.++..+ ++.|.+|++++.. +...+...+.+... .++.++.+|+.+..--....+... ...+
T Consensus 3 k~vlItG~-sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--~~~~ 79 (256)
T PRK12745 3 PVALVTGG-RRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQ--AAWG 79 (256)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH--HhcC
Confidence 45776674 55555554 4558899999864 33333333333322 368899999987432111111111 1224
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.||.|.
T Consensus 80 ~id~vi~~a 88 (256)
T PRK12745 80 RIDCLVNNA 88 (256)
T ss_pred CCCEEEECC
Confidence 578888874
No 486
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.79 E-value=28 Score=33.74 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=35.5
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHH
Q 017450 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 135 ~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~ 182 (371)
....++++++||=.|+| .|.++..+++. |++|++++.+++-.+.+++.
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL 208 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh
Confidence 34567789999999975 44455556654 77899999998888777664
No 487
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=63.69 E-value=53 Score=30.41 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=44.9
Q ss_pred CCCEEEEEcCc----ccH-HHHHHHHhCCeEEEEeCCHH---HHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhh
Q 017450 141 EGDIVLEIGPG----TGS-LTNVLLNAGATVLAIEKDQH---MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERR 212 (371)
Q Consensus 141 ~~~~VLEIG~G----~G~-lt~~La~~~~~V~aIE~d~~---~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~ 212 (371)
.++++|=.|++ .|. ++..+++.|++|+.+..+.+ ..+.+.+......++..+..|+.+..--....+...
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~-- 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK-- 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH--
Confidence 46789999973 443 44455566889877654321 122222221112346677888876542211111111
Q ss_pred ccCCCeeEEEecCCC
Q 017450 213 KSSSGFAKVVANIPF 227 (371)
Q Consensus 213 ~~~~~~d~VVaNlPy 227 (371)
...+..|++|.|.-+
T Consensus 83 ~~~g~iD~lv~nag~ 97 (258)
T PRK07370 83 QKWGKLDILVHCLAF 97 (258)
T ss_pred HHcCCCCEEEEcccc
Confidence 123568999988643
No 488
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=63.18 E-value=18 Score=38.98 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=23.1
Q ss_pred CCEEEEEcCcccHHHHHHHHh--------------CCeEEEEeCCH
Q 017450 142 GDIVLEIGPGTGSLTNVLLNA--------------GATVLAIEKDQ 173 (371)
Q Consensus 142 ~~~VLEIG~G~G~lt~~La~~--------------~~~V~aIE~d~ 173 (371)
.=+|+|+|-|+|..+....+. --+++++|.++
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 358999999999965544421 12799999864
No 489
>PRK08309 short chain dehydrogenase; Provisional
Probab=63.11 E-value=1.1e+02 Score=27.14 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=36.6
Q ss_pred EEEEEcCcccHH---HHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccch
Q 017450 144 IVLEIGPGTGSL---TNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCH 200 (371)
Q Consensus 144 ~VLEIG~G~G~l---t~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~ 200 (371)
++|=+|. +|.. +..|++.|.+|+.+..+++-.+.+.......+++..+.+|+.+..
T Consensus 2 ~vlVtGG-tG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~ 60 (177)
T PRK08309 2 HALVIGG-TGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDD 60 (177)
T ss_pred EEEEECc-CHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHH
Confidence 4566663 3554 344455688999999998766665554433346788888887643
No 490
>PRK09134 short chain dehydrogenase; Provisional
Probab=63.05 E-value=73 Score=29.21 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=45.5
Q ss_pred CCCEEEEEcCcccHHHHHH----HHhCCeEEEEeC-CHHHHHHHHHHhcc-CCCeEEEEcccccchhhhhhhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGSLTNVL----LNAGATVLAIEK-DQHMVGLVRERFAS-IDQLKVLQEDFVKCHIRSHMLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~lt~~L----a~~~~~V~aIE~-d~~~i~~a~~~~~~-~~~v~vi~gD~~~~~~~~~~~~l~~~~~~ 214 (371)
.++++|=.|.+ |.++..+ ++.|.+|+.+.. +....+.+...+.. ..++.++.+|..+..--....+... ..
T Consensus 8 ~~k~vlItGas-~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~--~~ 84 (258)
T PRK09134 8 APRAALVTGAA-RRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARAS--AA 84 (258)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH--HH
Confidence 35678888865 4444444 445888877654 44444444433322 2368888999876542211111111 11
Q ss_pred CCCeeEEEecC
Q 017450 215 SSGFAKVVANI 225 (371)
Q Consensus 215 ~~~~d~VVaNl 225 (371)
.+..|.||.|.
T Consensus 85 ~~~iD~vi~~a 95 (258)
T PRK09134 85 LGPITLLVNNA 95 (258)
T ss_pred cCCCCEEEECC
Confidence 24679999875
No 491
>PRK07856 short chain dehydrogenase; Provisional
Probab=62.88 E-value=48 Score=30.31 Aligned_cols=75 Identities=20% Similarity=0.231 Sum_probs=46.0
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchh-hhhhhhHHHhhccCC
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI-RSHMLSLFERRKSSS 216 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~-~~~~~~l~~~~~~~~ 216 (371)
.++++|=.|++.|. ++..|++.|.+|+.++.++.. . . ...++.++.+|+.+..- ......+.+ ..+
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----~-~-~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~ 74 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----T-V-DGRPAEFHAADVRDPDQVAALVDAIVE---RHG 74 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----h-h-cCCceEEEEccCCCHHHHHHHHHHHHH---HcC
Confidence 46788888876543 455566678899999988653 1 1 12367888999876432 111111111 225
Q ss_pred CeeEEEecC
Q 017450 217 GFAKVVANI 225 (371)
Q Consensus 217 ~~d~VVaNl 225 (371)
..|.+|.|.
T Consensus 75 ~id~vi~~a 83 (252)
T PRK07856 75 RLDVLVNNA 83 (252)
T ss_pred CCCEEEECC
Confidence 679999875
No 492
>PRK07832 short chain dehydrogenase; Provisional
Probab=62.53 E-value=62 Score=30.05 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=44.4
Q ss_pred EEEEEcCcccH---HHHHHHHhCCeEEEEeCCHHHHHHHHHHhccCC--CeEEEEcccccchhhhh-hhhHHHhhccCCC
Q 017450 144 IVLEIGPGTGS---LTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLKVLQEDFVKCHIRSH-MLSLFERRKSSSG 217 (371)
Q Consensus 144 ~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~~i~~a~~~~~~~~--~v~vi~gD~~~~~~~~~-~~~l~~~~~~~~~ 217 (371)
++|=+|.+.|. ++..+++.|++|+.++.+++..+.+.+.+...+ .+.++.+|+.+...-.. ...+.+ ..+.
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~---~~~~ 78 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHA---AHGS 78 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHH---hcCC
Confidence 46666764332 334455568899999998876655544443222 24556788776432111 111111 2245
Q ss_pred eeEEEecCC
Q 017450 218 FAKVVANIP 226 (371)
Q Consensus 218 ~d~VVaNlP 226 (371)
.|.+|.|.-
T Consensus 79 id~lv~~ag 87 (272)
T PRK07832 79 MDVVMNIAG 87 (272)
T ss_pred CCEEEECCC
Confidence 788887753
No 493
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=62.35 E-value=32 Score=34.39 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCCEEEEEcCc-ccHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHh
Q 017450 141 EGDIVLEIGPG-TGSLTNVLLNA-GATVLAIEKDQHMVGLVRERF 183 (371)
Q Consensus 141 ~~~~VLEIG~G-~G~lt~~La~~-~~~V~aIE~d~~~i~~a~~~~ 183 (371)
++.+|+=||+| .|..+...+.. |++|+.+|.+++-.+.+...+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~ 210 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF 210 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence 45679999998 55665555554 789999999988766665544
No 494
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.20 E-value=32 Score=33.33 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=34.9
Q ss_pred HHhcCCCCCEEEEEcCc-ccHHHHHHHHh-CC-eEEEEeCCHHHHHHHHHH
Q 017450 135 AAAAVQEGDIVLEIGPG-TGSLTNVLLNA-GA-TVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 135 ~~l~~~~~~~VLEIG~G-~G~lt~~La~~-~~-~V~aIE~d~~~i~~a~~~ 182 (371)
......++++||=+|+| .|.++..+++. |. +|++++.+++-.+.+++.
T Consensus 163 ~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 163 HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 33445578899988876 35566666665 66 699999999988888763
No 495
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=61.87 E-value=73 Score=29.24 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=46.6
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeC-CHHHHHHHHHHhccC-CCeEEEEcccccchhhhh-hhhHHHhhcc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEK-DQHMVGLVRERFASI-DQLKVLQEDFVKCHIRSH-MLSLFERRKS 214 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~-d~~~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~~-~~~l~~~~~~ 214 (371)
.++++|=+|.+.|. ++..+++.|.+|+.+.. ++.....+.+.+... .++.++..|+.+...-.. ...+.+ .
T Consensus 6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~---~ 82 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK---E 82 (261)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH---H
Confidence 56788888876553 33445556888877665 344444444443322 367788889876532111 111111 2
Q ss_pred CCCeeEEEecCC
Q 017450 215 SSGFAKVVANIP 226 (371)
Q Consensus 215 ~~~~d~VVaNlP 226 (371)
.++.|.+|.|.-
T Consensus 83 ~g~id~lv~~ag 94 (261)
T PRK08936 83 FGTLDVMINNAG 94 (261)
T ss_pred cCCCCEEEECCC
Confidence 356788887753
No 496
>PRK06128 oxidoreductase; Provisional
Probab=61.72 E-value=59 Score=30.86 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=45.9
Q ss_pred CCCEEEEEcCcccH---HHHHHHHhCCeEEEEeCCHH--HHHHHHHHhccC-CCeEEEEcccccchhhh-hhhhHHHhhc
Q 017450 141 EGDIVLEIGPGTGS---LTNVLLNAGATVLAIEKDQH--MVGLVRERFASI-DQLKVLQEDFVKCHIRS-HMLSLFERRK 213 (371)
Q Consensus 141 ~~~~VLEIG~G~G~---lt~~La~~~~~V~aIE~d~~--~i~~a~~~~~~~-~~v~vi~gD~~~~~~~~-~~~~l~~~~~ 213 (371)
.+++||=.|++.|. ++..|++.|.+|+.+..+.+ -.+...+.+... .++.++.+|+.+...-. ....+.+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~--- 130 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK--- 130 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH---
Confidence 46789999964433 34455556889887765432 222233333222 26778889987653211 1111111
Q ss_pred cCCCeeEEEecCC
Q 017450 214 SSSGFAKVVANIP 226 (371)
Q Consensus 214 ~~~~~d~VVaNlP 226 (371)
..+..|++|.|.-
T Consensus 131 ~~g~iD~lV~nAg 143 (300)
T PRK06128 131 ELGGLDILVNIAG 143 (300)
T ss_pred HhCCCCEEEECCc
Confidence 2246899998753
No 497
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=61.68 E-value=22 Score=33.82 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=29.2
Q ss_pred EEEEEcCcc--cHHHHHHHHhCCeEEEEeCCHHHHHHHHHH
Q 017450 144 IVLEIGPGT--GSLTNVLLNAGATVLAIEKDQHMVGLVRER 182 (371)
Q Consensus 144 ~VLEIG~G~--G~lt~~La~~~~~V~aIE~d~~~i~~a~~~ 182 (371)
+|.=||+|. |.++..|.+.|.+|+++|.+++..+.+.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER 42 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC
Confidence 466678874 456677777788999999999887776543
No 498
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=61.52 E-value=40 Score=33.51 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=49.9
Q ss_pred EEEEcCcccHHHHHHHH----hC-C-eEEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhhhhHHHhhccCCCe
Q 017450 145 VLEIGPGTGSLTNVLLN----AG-A-TVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGF 218 (371)
Q Consensus 145 VLEIG~G~G~lt~~La~----~~-~-~V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~~~l~~~~~~~~~~ 218 (371)
|+=+|+ |..+..+++ .. . +|+..|++.+-++.+.+.+ ...+++.+..|+.+..- +..++ ...
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~---l~~~~------~~~ 68 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPES---LAELL------RGC 68 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHH---HHHHH------TTS
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHH---HHHHH------hcC
Confidence 566788 555444443 33 2 8999999999877766543 23489999999876542 11122 335
Q ss_pred eEEEecCCCcccHHHHHHhccCCC
Q 017450 219 AKVVANIPFNISTDVIKQLLPMGD 242 (371)
Q Consensus 219 d~VVaNlPy~iss~il~~Ll~~g~ 242 (371)
|+||...|.....++++..++.|-
T Consensus 69 dvVin~~gp~~~~~v~~~~i~~g~ 92 (386)
T PF03435_consen 69 DVVINCAGPFFGEPVARACIEAGV 92 (386)
T ss_dssp SEEEE-SSGGGHHHHHHHHHHHT-
T ss_pred CEEEECCccchhHHHHHHHHHhCC
Confidence 888887765567777776665443
No 499
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=61.45 E-value=97 Score=25.96 Aligned_cols=43 Identities=26% Similarity=0.477 Sum_probs=28.1
Q ss_pred CCCEEEEEcCcc--cHHHHHHHHhC-CeEEEEeCCHHHHHHHHHHh
Q 017450 141 EGDIVLEIGPGT--GSLTNVLLNAG-ATVLAIEKDQHMVGLVRERF 183 (371)
Q Consensus 141 ~~~~VLEIG~G~--G~lt~~La~~~-~~V~aIE~d~~~i~~a~~~~ 183 (371)
.+.+|+=+|+|. +.....+++.+ .+|+.++.+++-.+.+.+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 567899999862 12333344444 68999999987666555444
No 500
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=61.42 E-value=30 Score=39.41 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=54.9
Q ss_pred CCEEEEEcCc-ccHHHH-HHHHh-CCe-------------EEEEeCCHHHHHHHHHHhccCCCeEEEEcccccchhhhhh
Q 017450 142 GDIVLEIGPG-TGSLTN-VLLNA-GAT-------------VLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHM 205 (371)
Q Consensus 142 ~~~VLEIG~G-~G~lt~-~La~~-~~~-------------V~aIE~d~~~i~~a~~~~~~~~~v~vi~gD~~~~~~~~~~ 205 (371)
.++|+=|||| .|.... .|++. +.. |+..|++.+..+.+.+.+ ++++.+..|+.+..- .
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~---~~~~~v~lDv~D~e~--L- 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI---ENAEAVQLDVSDSES--L- 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc---CCCceEEeecCCHHH--H-
Confidence 5689999998 355433 33332 223 888999987766655543 356667777655421 1
Q ss_pred hhHHHhhccCCCeeEEEecCCCcccHHHHHHhccCC
Q 017450 206 LSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG 241 (371)
Q Consensus 206 ~~l~~~~~~~~~~d~VVaNlPy~iss~il~~Ll~~g 241 (371)
..+ -...|+||+-+|+....++....+..|
T Consensus 643 ~~~------v~~~DaVIsalP~~~H~~VAkaAieaG 672 (1042)
T PLN02819 643 LKY------VSQVDVVISLLPASCHAVVAKACIELK 672 (1042)
T ss_pred HHh------hcCCCEEEECCCchhhHHHHHHHHHcC
Confidence 111 134899999999977766666555544
Done!