RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017450
(371 letters)
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 179 bits (456), Expect = 2e-55
Identities = 65/181 (35%), Positives = 100/181 (55%), Gaps = 13/181 (7%)
Query: 129 INDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
+ D++ AA ++ GD VLEIGPG G+LT LL V AIE D + +RE+FA+ D
Sbjct: 1 VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAAADN 60
Query: 189 LKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVV 248
L V+ D +K + KVV N+P+NIST ++ +LL F + V
Sbjct: 61 LTVIHGDALKFDLPKL------------QPYKVVGNLPYNISTPILFKLLEEPPAFRDAV 108
Query: 249 LLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFFPQPKVDAAVVTFKL 308
L++Q+E A RL + +Y +++ + Y++ + FKVP + F P PKVD+AVV +
Sbjct: 109 LMVQKEVARRLAAKPG-SKDYGRLSVLLQPYADVKILFKVPPSAFRPPPKVDSAVVRLER 167
Query: 309 K 309
+
Sbjct: 168 R 168
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 177 bits (450), Expect = 2e-53
Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 14/204 (6%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
P K LGQ+++++ + D++ AA + GD VLEIGPG G+LT LL A V AIE D+
Sbjct: 4 PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +++ERFA D L V+ D +K S + KVVAN+P+NIS+ ++
Sbjct: 64 LAEVLKERFAPYDNLTVINGDALK-----------FDFPSLAQPYKVVANLPYNISSPIL 112
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNF 293
+LL I ++VL++Q+E A RLV +P + +Y +++ V +Y++ E F VP + F
Sbjct: 113 FKLLEEKFIIQDMVLMVQKEVAERLVAKPG--SKDYGRLSVLVQYYADVEIVFDVPPSAF 170
Query: 294 FPQPKVDAAVVTFKLKQATDYPAV 317
+P PKVD+AVV K+ P
Sbjct: 171 YPPPKVDSAVVRLVPKKEKPSPVK 194
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 170 bits (433), Expect = 1e-50
Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 17/225 (7%)
Query: 104 TIKALNSKGRFPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG 163
T + L G +KSLGQ+++++ I D++ AA Q GD VLEIGPG G+LT LL
Sbjct: 5 TRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA 64
Query: 164 ATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVA 223
A V A+E D+ + ++ E FA D L +++ D +K + + KVVA
Sbjct: 65 AKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALK----------VDLSELQP--LKVVA 111
Query: 224 NIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEP 282
N+P+NI+T ++ LL D ++V+++Q+E A R+V +P + Y +++ V +Y +
Sbjct: 112 NLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPG--SKAYGRLSVLVQYYCDV 169
Query: 283 EYKFKVPRTNFFPQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMV 327
E F VP + F P PKVD+AVV ++ P + FF +V
Sbjct: 170 EKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVK-DEELFFRVV 213
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 153 bits (388), Expect = 2e-44
Identities = 71/197 (36%), Positives = 114/197 (57%), Gaps = 15/197 (7%)
Query: 114 FPRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQ 173
PRKSLGQ+++++ + ++ AA V EGD+VLEIGPG G+LT LL V AIE D+
Sbjct: 2 RPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDR 61
Query: 174 HMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+ +R+ + + L++++ D +K KVV+N+P+NIS+ +
Sbjct: 62 RLAERLRKLLSLYENLEIIEGDALK-----------VDLNEFPKQLKVVSNLPYNISSPL 110
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
I +LL D F VL++Q+E A RL +P + +Y +++ V +++ E FKVP +
Sbjct: 111 IFKLL-EKDKFRLAVLMVQKEVAERLTAKPG--SKDYGRLSVLVQYFANVEIVFKVPPSA 167
Query: 293 FFPQPKVDAAVVTFKLK 309
F+P PKVD+AVV +
Sbjct: 168 FYPPPKVDSAVVRLIPR 184
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 140 bits (356), Expect = 1e-39
Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 17/193 (8%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
K LGQH++++ + D++ A +GD VLEIGPG G+LT+ L V AIE D
Sbjct: 3 MNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ +R+ + +++++ D +K + F KVV+N+P+ IS+ +
Sbjct: 63 LAEFLRDDEIAAGNVEIIEGDALKVDLPE--------------FNKVVSNLPYQISSPIT 108
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
+LL G F VL+ Q+E A R+V T EY +++ V +Y++ E KVP F
Sbjct: 109 FKLLKHG--FEPAVLMYQKEFAERMVAKP-GTKEYGRLSVMVQYYADVEIVEKVPPGAFS 165
Query: 295 PQPKVDAAVVTFK 307
P+PKVD+AVV
Sbjct: 166 PKPKVDSAVVRLT 178
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 132 bits (335), Expect = 2e-36
Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 17/218 (7%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQH 174
R+ GQ+++ N ++ +++ A +QE D VLEIGPG G+LT L V+AIE D
Sbjct: 3 GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62
Query: 175 MVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVI 234
+ ++E+ A ++V+ +DF+K S + VV NIP+NI+T ++
Sbjct: 63 LAKRLQEKLALHPNVEVVHQDFLK-------FSFPKDDP-----FLVVGNIPYNITTPIV 110
Query: 235 KQLLPMGDIFSEVVLLLQEETALRLVEPSLRTSEYRPINIFVNFYSEPEYKFKVPRTNFF 294
K+LL +++L++Q+E A RL+ R + + +++ + KVPR++F
Sbjct: 111 KKLLFESRFGVKMLLVVQKEFARRLLA---RPKIRSRLTVLTEPFTDIKLVAKVPRSSFR 167
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSFFSMVVPLLN 332
P PKVD+A+V +L++ V K + +V L N
Sbjct: 168 PPPKVDSALV--RLERRDTPLPVKDLKKYDYLVRKLFN 203
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 112 bits (282), Expect = 1e-28
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K GQH + N + D++ AA++ D VLEIGPGTG+LT LL V+AIE D MV
Sbjct: 12 KKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMV 71
Query: 177 GLVRERFASI---DQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDV 233
+++RF + +L+V++ D +K + F F VAN+P+ IS+ +
Sbjct: 72 AELKKRFQNSPLASKLEVIEGDALK--------TEFPY------FDVCVANVPYQISSPL 117
Query: 234 IKQLLPMGDIFSEVVLLLQEETALRLV-EPSLRTSEYRPINIFVNFYSEPEYKFKVPRTN 292
+ +LL +F VL+ Q+E ALRL+ +P Y +++ + KV + +
Sbjct: 118 VFKLLAHRPLFRCAVLMFQKEFALRLLAQPG--DELYCRLSVNTQLLCRVTHLMKVSKNS 175
Query: 293 FFPQPKVDAAVV 304
F P PKV+++VV
Sbjct: 176 FNPPPKVESSVV 187
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 43.1 bits (102), Expect = 2e-05
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRER--FASIDQLKVLQEDF 196
G VL+IG GTGSL L GA V ++ M+ L RE A ++ +Q D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 43.0 bits (102), Expect = 9e-05
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 135 AAAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFA 184
AVQ GD VL++G G G+ L + V+ I++ + M+ L +ER A
Sbjct: 13 ELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA 65
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 41.4 bits (98), Expect = 2e-04
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID----Q 188
LA A ++GD VLE+G G+G + V G V+ ++ + + V + +
Sbjct: 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNG 74
Query: 189 LKVLQEDFVKC 199
++V++ D +
Sbjct: 75 VEVIRSDLFEP 85
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 41.5 bits (98), Expect = 3e-04
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFAS--IDQLK 190
+ ++ GD VLEIG G+G VL V++IE+ + + R + + +
Sbjct: 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVT 123
Query: 191 VLQED 195
V D
Sbjct: 124 VRHGD 128
>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid
metabolism].
Length = 194
Score = 40.5 bits (95), Expect = 5e-04
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG---ATVLAIEKDQHMVGLVRERFASIDQL 189
+A+ + G VLE+GPGTG +T +L+ G ++ AIE V + + + ++ +
Sbjct: 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNII 99
Query: 190 KVLQEDFVKCHIRSHMLSLFERRKSSSGFAKV-VANIPFNISTDVIKQLL 238
+R+ L + + S + + + N P + +++ LL
Sbjct: 100 NGDAF-----DLRTT-LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLL 143
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 39.3 bits (92), Expect = 8e-04
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFAS--IDQLKVLQE 194
+ G VL++G GTG LT +L L GA V+ I+ + + +E + ++ +Q
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61
Query: 195 DFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEE 254
D + L + + + F V++N N D + E++ +L+
Sbjct: 62 D---------IEELPQLQLEDNSFDVVISNEVLNHLPD-------PDKVLEEIIRVLKPG 105
Query: 255 TALRLVEPSL 264
L + +P L
Sbjct: 106 GVLIVSDPVL 115
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 146 LEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHI 201
L+IG GTG+L LL A G ++ + ER A++ L ++
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA 58
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 38.6 bits (90), Expect = 0.002
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLT---NVLLNAGATVLAIEKDQHMVGLVR 180
M EI + +++GD++L+IG GTGS+T ++L+ V A++KD+ + L R
Sbjct: 23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR 82
Query: 181 ---ERFASIDQLKVLQED 195
E+F ++ + +++ +
Sbjct: 83 RNAEKFGVLNNIVLIKGE 100
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVR- 180
M EI + + GD + +IG GTGS+T AG V+AIE+D+ + L+
Sbjct: 17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER 76
Query: 181 --ERF 183
RF
Sbjct: 77 NAARF 81
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 35.0 bits (81), Expect = 0.008
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 145 VLEIGPGTGSLTNVLLNAG-ATVLAIEKDQHMVGLVRERFASID-QLKVLQEDF 196
+L++G GTG + L AG ++V ++ + + L +ER +++ + D
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADA 54
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 35.5 bits (82), Expect = 0.009
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 142 GDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHMVGLVRERFASI---DQLKVLQEDF 196
GD VL+ G G+G+ AG A V+ +E D L R R A +++V+ D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 197 VKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
+ E S F V+ N P+
Sbjct: 61 RELL---------ELPDGS--FDLVLGNPPY 80
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 35.4 bits (82), Expect = 0.011
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 124 MLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA--GATVLAIEKDQHMVGLVRE 181
M E+ + ++ GD++ +IG GTGS+T V AIE++ + L+
Sbjct: 2 MTKREVRALTLSKLRLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIER 61
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 34.7 bits (80), Expect = 0.013
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 145 VLEIGPGTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFASIDQLKVLQEDFVKCHIRS 203
VL++G GTG+L L + GA V ++ + L R+ L + +K
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKA---AAALLADNVEVLKGDAEE 58
Query: 204 HMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLL 238
E F ++++ P + + + + L
Sbjct: 59 LPPEADES------FDVIISDPPLHHLVEDLARFL 87
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 35.3 bits (82), Expect = 0.037
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 15/101 (14%)
Query: 133 LAAAAAVQEGDIVLEIGPGTG--SLTNVLLNAGATVLAIEKDQHMVGLVRERFAS---ID 187
LAA A V + +L++G G G L A ++ +E + + + A +
Sbjct: 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95
Query: 188 QLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPFN 228
+++V++ D F + + F ++ N P+
Sbjct: 96 RIQVIEADI----------KEFLKALVFASFDLIICNPPYF 126
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 34.6 bits (80), Expect = 0.044
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 115 PRKSLGQHYMLNSEINDQLAAAAAVQ---EGDIVLEIGPGTGSLTNVLLNAGA-TVLAIE 170
P+ L Q Y + + + A ++ EG VL++G GTG L GA VLA++
Sbjct: 17 PKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVD 75
Query: 171 KDQHMVGLVRERFASIDQLKVLQEDFVKCHIRSHMLSLFERRKSSSGFAKVVANIPF 227
D + + R A V +FV + F V+ N PF
Sbjct: 76 IDPEALEIARAN-AEELLGDV---EFVVADVSDF----------RGKFDTVIMNPPF 118
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 33.7 bits (77), Expect = 0.068
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASID--QLK 190
L A + D VLEIG GTG + L G +L + + V +RE A ++ L
Sbjct: 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELREN-AKLNNVGLD 69
Query: 191 VLQEDFVK 198
V+ D K
Sbjct: 70 VVMTDLFK 77
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 33.4 bits (77), Expect = 0.092
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSLT--NVLLNAGATVLAIEKDQHMVGLVR---ERFASID 187
L + ++ ++ +IG GTG++ LL V+AIE+D+ +V L+R +RF +
Sbjct: 32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-VK 90
Query: 188 QLKVLQ 193
++V++
Sbjct: 91 NVEVIE 96
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 34.3 bits (79), Expect = 0.094
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 136 AAAVQEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRERFASI 186
A V++G VLEIG GTG +L L V ++E D + A+
Sbjct: 102 ALDVEDGHRVLEIGTGTGYSAALLCHRLGDDN-VTSVEVDPGLAARAASALAAA 154
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 33.3 bits (77), Expect = 0.12
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRER 182
+L+ G G GSL+ L GA V+A + MV RER
Sbjct: 67 ILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARER 104
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 32.5 bits (74), Expect = 0.14
Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKVLQE--DFVK 198
G VL+IG GTG L +L G V ++ V + VL D +
Sbjct: 22 PGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAV--LIFSLFDAPDPAVLAGKYDLI- 78
Query: 199 CHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMGDIFSEVVLLLQEETALR 258
+ E + +++LL G VLL+ A
Sbjct: 79 -----TAFEVLEHLPDPPALLQ------------QLRELLKPG-----GVLLISTPLADD 116
Query: 259 LVEPSLRTSEYRPINIFVNFYSE 281
RP N ++FYSE
Sbjct: 117 DARLFANWHYLRPRNTHISFYSE 139
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 32.8 bits (75), Expect = 0.17
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 139 VQEGDI----VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQ 188
+ + + VL+ G GTG L+ L GA V A++ + MV + R R D
Sbjct: 49 LPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV 102
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 33.0 bits (76), Expect = 0.19
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 131 DQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA---GATVLAIEKDQHMVGLVRERFASID 187
D + ++ G +L+IG G G L + A G TV+ + + + +R A+
Sbjct: 62 DLILEKLGLKPGMTLLDIGCGWGGL--AIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG 119
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 31.1 bits (71), Expect = 0.21
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 146 LEIGPGTGSLTNVLL-NAGATVLAIEKDQHMVGLVRERFASIDQLKVLQEDF 196
L++G GTG L L GA V ++ M+ L R+R K + D
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR----APRKFVVGDA 48
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 31.5 bits (72), Expect = 0.51
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 132 QLAAAAAVQEGDIVLEIGPGTGSLTNVLLNA 162
+ A + G VLE G G+G+LT L A
Sbjct: 85 YIVARLGISPGSRVLEAGTGSGALTAYLARA 115
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 30.0 bits (68), Expect = 1.6
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 145 VLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRERFASIDQLKV 191
VL++G G G L+ L GA+V I+ + + + + A + +
Sbjct: 63 VLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLH-ALESGVNI 108
>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI. IscR
(TIGR02010) is an iron-sulfur cluster-binding
transcriptional regulator (see Genome Property
GenProp0138). Members of this protein family include
YhgI, whose expression is under control of IscR, and
show sequence similarity to IscA, a known protein of
iron-sulfur cluster biosynthesis. These two lines of
evidence strongly suggest a role as an iron-sulfur
cluster biosynthesis protein. An older study designated
this protein GntY and suggested a role for it and for
the product of an adjacent gene, based on
complementation studies, in gluconate utilization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 190
Score = 29.6 bits (67), Expect = 1.8
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 104 TIKALNSKGR--FPRKSLGQ--HYMLNSEINDQLAA-------AAAVQEGDIVLEIGPG 151
T+KA N+K L + +Y+L SEIN QLA+ +G VL+ G G
Sbjct: 89 TLKAPNAKMPKVADDAPLEERINYVLQSEINPQLASHGGKVTLVEITDDGVAVLQFGGG 147
>gnl|CDD|214688 smart00483, POLXc, DNA polymerase X family. includes vertebrate
polymerase beta and terminal
deoxynucleotidyltransferases.
Length = 334
Score = 30.0 bits (68), Expect = 1.8
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 210 ERRKSSSGFAK---VVANIPFNIST-DVIKQLLPMGDIFSEVVLLLQEETALRLVEPSLR 265
E ++ S F K V+ ++PF I++ +K L +GD + + + E V L
Sbjct: 22 ENKRKCSYFRKAASVLKSLPFPINSMKDLKGLPGIGDKIKKKIEEIIETGKSSKVLEILN 81
Query: 266 TSEYRPINIFVNFY 279
Y+ + +F N +
Sbjct: 82 DEVYKSLKLFTNVF 95
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 145 VLEIGPGTGSLTNV--LLNAGATVLAIEKDQHMVGLVRERFA 184
VL+IG GTG L + L GA V+ ++ M+ L R R
Sbjct: 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAE 93
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 29.9 bits (68), Expect = 1.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 141 EGDIVLEIGPGTGSLTNVLLNAGAT-VLAIE 170
+G +VL+IG TG T+VLL GA V A++
Sbjct: 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 29.5 bits (67), Expect = 2.0
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 118 SLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAG--ATVLAIEKDQHM 175
S G H + L + ++ GD VL++ GTG + +L + V+ ++ + M
Sbjct: 32 SFGLHRL----WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87
Query: 176 VGLVRERF 183
+ + RE+
Sbjct: 88 LEVAREKL 95
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 29.6 bits (67), Expect = 2.2
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 15/104 (14%)
Query: 139 VQEGDIVLEIGPGTGSLTNVLLNAGAT-VLAIEKDQHMVGLVRERFASIDQLKVLQEDFV 197
+++G VL++G G+G L GA V+ ++ D V + V
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQA---VEAARENARLNGVELLVQA 216
Query: 198 KCHIRSHMLSLFERRKSSSGFAKVVANIPFNISTDVIKQLLPMG 241
K +L + E F +VA NI +V+ +L P
Sbjct: 217 KG---FLLLEVPENGP----FDVIVA----NILAEVLVELAPDI 249
>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This
group shares the zinc coordination sites of the
zinc-dependent alcohol dehydrogenases. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of an
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 306
Score = 29.6 bits (67), Expect = 2.5
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 133 LAAAAAVQEGDIVLEIGPGTGSL--TNVLLNAGATVL--AIEKDQHMVGLVRERFASIDQ 188
+A + ++ GD V+ GPG L V GATV+ EKD+ + + +E D
Sbjct: 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE--LGADA 213
Query: 189 LKVLQEDFVK 198
+ +ED +
Sbjct: 214 VNGGEEDLAE 223
>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA
dehydrogenase. Members of this protein family are
6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an
enzyme in the anaerobic metabolism of aromatic enzymes
by way of benzoyl-CoA, as seen in Thauera aromatica,
Geobacter metallireducens, and Azoarcus sp. The
experimentally characterized form from T. aromatica uses
only NAD+, not NADP+. Note that Rhodopseudomonas
palustris uses a different pathway to perform a similar
degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 349
Score = 28.7 bits (64), Expect = 5.4
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 132 QLAAAAAVQEGDIVLEIGP-GTGSLTNVLLNA-GATVLAIEKDQHMVGLVRERFA----- 184
Q A A +++GD+V+ IG G G A GA V+AI+ D + +++ A
Sbjct: 157 QAAVQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLN 216
Query: 185 ----SIDQLKVLQEDFVKCH-IRSHMLSLFERRKSSSG 217
S ++K L + F K +RS +FE S G
Sbjct: 217 PKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPG 254
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 28.5 bits (64), Expect = 5.8
Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 11/120 (9%)
Query: 117 KSLGQHYMLNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMV 176
K G+ Y E+++ + + + + + G+G + LL A + + + +
Sbjct: 163 KEAGEFY-TPREVSELIVELLDPEPRNSIYDPACGSGGM---LLQAAKYLKRHQDEIFIY 218
Query: 177 GL-VRERFASIDQLKVLQEDF-VKCHIRSHMLSL----FERRKSSSGFAKVVANIPFNIS 230
G + + + ++ ++ +IR H +L + + F V+AN PF+
Sbjct: 219 GQEINDTTYRLAKMNLILHGIEGDANIR-HGDTLSNPKHDDKDDKGKFDFVIANPPFSGK 277
>gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional.
Length = 394
Score = 28.5 bits (64), Expect = 6.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 295 PQPKVDAAVVTFKLKQATDYPAVTSTKSF 323
PQP ++AA+ Q YP T SF
Sbjct: 50 PQPVIEAAIAALADPQNHGYPPFEGTASF 78
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 28.6 bits (65), Expect = 6.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 159 LLNAGATVLAIEKDQHMVGLVRERFA 184
L AGA +LAI KD M GL++ A
Sbjct: 700 LEKAGAHILAI-KD--MAGLLKPAAA 722
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 27.9 bits (62), Expect = 6.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 143 DIVLEIGPGTGSLTNVLLNAGATVLAIEKDQHMVGLVRE--RFASIDQLKVLQED 195
D ++G G+G L+ V +A V+AIEKD L E +V+ D
Sbjct: 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGD 88
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 27.7 bits (62), Expect = 7.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 140 QEGDIVLEIGPGTGSLTNVL---LNAGATVLAIEKDQHMVGLVRE 181
+ G VLEIG G+G LT + V++IE H+ LV
Sbjct: 72 KPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIE---HIPELVEI 113
>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This
group contains members identified as related to
zinc-dependent alcohol dehydrogenase and other members
of the MDR family. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group includes
various activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
ADH-like proteins typically form dimers (typically
higher plants, mammals) or tetramers (yeast, bacteria),
and generally have 2 tightly bound zinc atoms per
subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 337
Score = 28.3 bits (64), Expect = 7.5
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 137 AAVQEGDIVLEIGPGTGSLTN--VLLNAGATVLAIEKDQHMVGLVRERFA 184
A V GD VL +G G L V GA V+ ++ D R FA
Sbjct: 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDE-----RLEFA 199
>gnl|CDD|218283 pfam04830, DUF637, Possible hemagglutinin (DUF637). This family
represents a conserved region found in a bacterial
protein which may be a hemagglutinin or hemolysin.
Length = 172
Score = 27.7 bits (62), Expect = 7.8
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 125 LNSEINDQLAAAAAVQEGDIVLEIGPGTGSLTNVLLNAGA 164
L E + LAAA A GDI + G GS V +A
Sbjct: 112 LLGEAANALAAAGANAIGDIGDDGGLDEGSPAKVAAHALL 151
>gnl|CDD|220698 pfam10334, DUF2421, Protein of unknown function (DUF2421). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 224
Score = 27.6 bits (62), Expect = 8.3
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 111 KGRFPRKSLGQHYMLNSEINDQLA 134
GR+P + L +++ L
Sbjct: 77 SGRWPSAKYKRLQTLCTDLVQLLG 100
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 27.9 bits (62), Expect = 8.5
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 99 DDYHATIKALNSKGRFPRKSLGQHYMLNSEINDQLAAA------AAVQEGDIVLEIGP 150
+DYH I A N L + Y ++ E D AAA AA++ G EI P
Sbjct: 153 NDYHMGITAEN---------LVEKYGISREAQDAFAAASQQKAVAAIEAGRFDDEITP 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.378
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,378,680
Number of extensions: 1753714
Number of successful extensions: 1570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1550
Number of HSP's successfully gapped: 59
Length of query: 371
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 273
Effective length of database: 6,590,910
Effective search space: 1799318430
Effective search space used: 1799318430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)