BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017451
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 62 SGWIVAGWIKESLSKVLAEQPMLGGRLRRREDGNGELEVVSNDSGARLIEAKMAMTLSEF 121
S + A +K++LS+ L + GRL+R EDG E+E N G +EA+ + +F
Sbjct: 50 SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIEC--NGEGVLFVEAESDGVVDDF 107
Query: 122 LGSKERSEDAEAELVFWKDIDEQNPQYSPLFYVQVTNFECGGHSVGISCSIXXXXXXXXX 181
E L+ D + Y+ L +QVT F+CGG S+G+
Sbjct: 108 GDFAPTLE--LRRLIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 164
Query: 182 XXXXXWADI 190
W+D+
Sbjct: 165 HFINSWSDM 173
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 62 SGWIVAGWIKESLSKVLAEQPMLGGRLRRREDGNGELEVVSNDSGARLIEAKMAMTLSEF 121
S + A +K++LS+ L + GRL+R EDG E+E N G +EA+ + +F
Sbjct: 53 SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIEC--NGEGVLFVEAESDGVVDDF 110
Query: 122 LGSKERSEDAEAELVFWKDIDEQNPQYSPLFYVQVTNFECGGHSVGISCSIXXXXXXXXX 181
E L+ D + Y+ L +QVT F+CGG S+G+
Sbjct: 111 GDFAPTLE--LRRLIPAVDYSQGISSYA-LLVLQVTYFKCGGVSLGVGMRHHAADGFSGL 167
Query: 182 XXXXXWADI 190
W+D+
Sbjct: 168 HFINSWSDM 176
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 29 QTLRVSVTEPADSGIFRTCLNLILYYNKVVDED-SGWIVAGWIKESLSKVLAEQPMLGGR 87
Q+L+ D + + IL+Y +D + + +K+SLSKVL L GR
Sbjct: 21 QSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGR 80
Query: 88 LRRREDGNGELEVVSNDSGARLIEAKMAMTLSEFLGSKERSEDAEAELVFWK------DI 141
+ N V NDSG +EA++ LS+ + + E + L ++
Sbjct: 81 I------NVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEV 134
Query: 142 DEQNPQYSPLFYVQVTNFECGGHSVGISCS 171
+E P V+++ FECGG ++G++ S
Sbjct: 135 NEDVP-----LAVKISFFECGGTAIGVNLS 159
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 62 SGWIVAGWIKESLSKVLAEQPMLGGRLRRREDGNGELEVVSNDSGARLIEAKMAMTLSEF 121
S + A +K++LS+ L + GRL+R EDG E+E N G +EA+ + +F
Sbjct: 53 SNFFDAKVLKDALSRALVPFYPMAGRLKRDEDGRIEIEC--NGEGVLFVEAESDGVVDDF 110
Query: 122 LGSKERSEDAEAELVFWKDIDEQNPQYSPLFYVQVTNFECGGHSVGISCSIXXXXXXXXX 181
E L+ D + Y+ L +QVT F+ GG S+G+
Sbjct: 111 GDFAPTLE--LRRLIPAVDYSQGISSYA-LLVLQVTYFKXGGVSLGVGMRHHAADGFSGL 167
Query: 182 XXXXXWADI 190
W+D+
Sbjct: 168 HFINSWSDM 176
>pdb|3N7K|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype C1
Binding Domain
pdb|3N7K|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype C1
Binding Domain
Length = 426
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 98 LEVVSNDSGARL--IEAKMAMTLSEFLGSKERSEDAEAELVFWKDIDEQNPQYSPLFYVQ 155
++ V N+SG + I + TL +++ED+E + F DI P Y+ F+V
Sbjct: 94 IDSVKNNSGWSIGIISNFLVFTL-------KQNEDSEQSINFSYDISNNAPGYNKWFFVT 146
Query: 156 VTNFECGGHSVGIS 169
VTN G + I+
Sbjct: 147 VTNNMMGNMKIYIN 160
>pdb|3R4S|A Chain A, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4S|B Chain B, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4U|A Chain A, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
pdb|3R4U|B Chain B, Cell Entry Of Botulinum Neurotoxin Type C Is Dependent
Upon Interaction With Two Ganglioside Molecules
Length = 443
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 98 LEVVSNDSGARL--IEAKMAMTLSEFLGSKERSEDAEAELVFWKDIDEQNPQYSPLFYVQ 155
++ V N+SG + I + TL +++ED+E + F DI P Y+ F+V
Sbjct: 99 IDSVKNNSGWSIGIISNFLVFTL-------KQNEDSEQSINFSYDISNNAPGYNKWFFVT 151
Query: 156 VTNFECGGHSVGIS 169
VTN G + I+
Sbjct: 152 VTNNMMGNMKIYIN 165
>pdb|1KHI|A Chain A, Crystal Structure Of Hex1
Length = 176
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 35 VTEPADSGIFRTCLNLILYYNKVVDEDSGWIVA----GWIKESLSKVLAEQPMLGGRLRR 90
V+ PA S + +T L + +V+D G IVA G +K++L + +Q L RL++
Sbjct: 86 VSNPAPSVVVQTMLGPVFKQYRVLDMQDGSIVAMTETGDVKQNLPVI--DQSSLWNRLQK 143
Query: 91 R-EDGNGELEV-VSNDSGARLIEAKMAMTLSEFLGSK 125
E G G + V V +D G +MA+ + GS+
Sbjct: 144 AFESGRGSVRVLVVSDHG-----REMAVDMKVVHGSR 175
>pdb|1HH1|A Chain A, The Structure Of Hjc, A Holliday Junction Resolving Enzyme
From Sulfolobus Solfataricus
Length = 143
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 87 RLRRREDGN----GELEVVSNDSGARLIEAKMAMTLSEFL 122
+LRR E GN E+E + + RL+EAK++ TL FL
Sbjct: 104 KLRRTETGNYVADSEIEGLDLEDLVRLVEAKISRTLDNFL 143
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 312 ARWDDLGANEIAFGQGNKPARVTN 335
A W D G+N++AFG+GN+ V N
Sbjct: 407 ANWWDNGSNQVAFGRGNRGFIVFN 430
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,112,047
Number of Sequences: 62578
Number of extensions: 384468
Number of successful extensions: 865
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 40
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)