Query 017454
Match_columns 371
No_of_seqs 259 out of 1517
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:42:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 1E-110 3E-115 806.5 30.8 356 3-358 5-362 (425)
2 PTZ00063 histone deacetylase; 100.0 3E-105 7E-110 800.8 38.4 355 3-358 2-362 (436)
3 PTZ00346 histone deacetylase; 100.0 4.9E-99 1E-103 752.3 36.6 346 3-349 18-371 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 4.9E-87 1.1E-91 655.9 32.3 325 5-338 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 6.7E-83 1.5E-87 623.0 27.0 298 12-317 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 3E-51 6.6E-56 434.1 19.8 290 22-323 463-762 (797)
7 KOG1344 Predicted histone deac 100.0 2.1E-44 4.5E-49 328.6 12.3 297 3-316 12-317 (324)
8 KOG1343 Histone deacetylase co 100.0 5.7E-39 1.2E-43 340.7 8.0 313 5-322 29-358 (797)
9 COG3914 Spy Predicted O-linked 87.9 24 0.00052 37.8 15.8 175 143-344 313-517 (620)
10 KOG0121 Nuclear cap-binding pr 79.4 1.6 3.5E-05 37.7 2.6 42 139-180 73-121 (153)
11 TIGR03018 pepcterm_TyrKin exop 78.7 13 0.00029 33.8 8.8 24 236-259 134-157 (207)
12 cd01835 SGNH_hydrolase_like_3 74.9 16 0.00035 32.3 8.0 74 221-295 41-117 (193)
13 cd04502 SGNH_hydrolase_like_7 70.9 12 0.00026 32.5 6.1 68 220-295 25-95 (171)
14 cd01836 FeeA_FeeB_like SGNH_hy 70.2 12 0.00026 33.0 6.1 66 221-295 44-112 (191)
15 cd04501 SGNH_hydrolase_like_4 68.6 19 0.00041 31.5 6.9 69 220-296 34-103 (183)
16 cd01822 Lysophospholipase_L1_l 67.9 17 0.00037 31.3 6.4 65 220-295 39-107 (177)
17 PF05582 Peptidase_U57: YabG p 62.3 25 0.00054 34.3 6.7 48 240-288 144-195 (287)
18 COG1618 Predicted nucleotide k 62.0 27 0.00058 31.7 6.4 37 251-296 101-137 (179)
19 cd01832 SGNH_hydrolase_like_1 60.4 28 0.00062 30.3 6.5 54 237-296 55-112 (185)
20 cd01825 SGNH_hydrolase_peri1 S 59.9 31 0.00066 30.1 6.6 51 241-296 47-103 (189)
21 cd04237 AAK_NAGS-ABP AAK_NAGS- 58.7 23 0.0005 34.3 6.0 64 233-304 1-64 (280)
22 cd01443 Cdc25_Acr2p Cdc25 enzy 57.6 55 0.0012 26.5 7.3 66 220-301 42-109 (113)
23 cd01828 sialate_O-acetylestera 56.3 41 0.00089 29.0 6.7 42 248-295 46-93 (169)
24 TIGR01007 eps_fam capsular exo 54.9 1.6E+02 0.0034 26.4 12.4 16 161-176 44-59 (204)
25 PF02310 B12-binding: B12 bind 54.3 30 0.00064 28.2 5.2 53 243-307 44-96 (121)
26 PRK14476 nitrogenase molybdenu 54.0 47 0.001 34.5 7.7 69 237-316 79-153 (455)
27 TIGR01969 minD_arch cell divis 52.9 15 0.00032 33.9 3.5 19 159-177 25-43 (251)
28 cd02068 radical_SAM_B12_BD B12 52.7 46 0.001 27.7 6.2 52 240-304 29-80 (127)
29 PF10609 ParA: ParA/MinD ATPas 52.3 43 0.00093 26.5 5.4 56 223-297 6-61 (81)
30 cd00840 MPP_Mre11_N Mre11 nucl 51.5 69 0.0015 28.7 7.6 62 231-301 23-87 (223)
31 TIGR02855 spore_yabG sporulati 49.4 38 0.00081 33.0 5.6 58 240-298 143-206 (283)
32 cd01841 NnaC_like NnaC (CMP-Ne 48.1 77 0.0017 27.3 7.1 69 220-295 26-96 (174)
33 PF13472 Lipase_GDSL_2: GDSL-l 47.5 16 0.00034 30.8 2.6 73 220-297 33-109 (179)
34 PRK13236 nitrogenase reductase 46.6 22 0.00047 34.6 3.6 23 161-184 32-54 (296)
35 KOG2749 mRNA cleavage and poly 45.0 1.2E+02 0.0027 30.8 8.6 114 155-297 123-247 (415)
36 PF04321 RmlD_sub_bind: RmlD s 43.5 7.1 0.00015 37.6 -0.3 54 242-295 43-99 (286)
37 TIGR01278 DPOR_BchB light-inde 43.0 49 0.0011 34.9 5.9 58 237-304 72-130 (511)
38 PRK05279 N-acetylglutamate syn 42.5 71 0.0015 32.8 6.9 65 232-304 7-71 (441)
39 TIGR01285 nifN nitrogenase mol 42.5 84 0.0018 32.4 7.4 69 237-316 78-152 (432)
40 COG0455 flhG Antiactivator of 41.7 75 0.0016 30.6 6.4 97 156-263 25-125 (262)
41 PF03266 NTPase_1: NTPase; In 41.4 18 0.00039 32.3 2.0 51 238-297 81-133 (168)
42 TIGR01890 N-Ac-Glu-synth amino 41.3 46 0.001 34.1 5.2 63 234-304 1-63 (429)
43 cd01830 XynE_like SGNH_hydrola 41.0 61 0.0013 29.1 5.5 59 233-294 60-124 (204)
44 cd01965 Nitrogenase_MoFe_beta_ 40.8 1.2E+02 0.0026 30.9 8.3 67 237-314 68-140 (428)
45 CHL00175 minD septum-site dete 40.7 30 0.00065 32.9 3.6 22 159-180 40-61 (281)
46 cd01829 SGNH_hydrolase_peri2 S 40.0 1.9E+02 0.004 25.4 8.5 19 244-262 53-71 (200)
47 cd01967 Nitrogenase_MoFe_alpha 40.0 1E+02 0.0022 31.1 7.5 70 237-316 74-145 (406)
48 PF02585 PIG-L: GlcNAc-PI de-N 40.0 60 0.0013 26.9 4.9 27 236-262 86-112 (128)
49 PF02310 B12-binding: B12 bind 39.9 1.3E+02 0.0027 24.4 6.8 44 152-195 17-60 (121)
50 cd01838 Isoamyl_acetate_hydrol 39.7 68 0.0015 27.9 5.5 45 250-295 63-113 (199)
51 cd01820 PAF_acetylesterase_lik 39.6 49 0.0011 30.0 4.7 44 246-295 85-134 (214)
52 cd03111 CpaE_like This protein 39.5 33 0.00073 27.8 3.2 15 163-177 29-43 (106)
53 cd02036 MinD Bacterial cell di 38.8 27 0.00059 30.2 2.8 23 158-180 23-45 (179)
54 cd01971 Nitrogenase_VnfN_like 38.7 90 0.0019 32.0 6.9 58 237-304 73-131 (427)
55 cd01833 XynB_like SGNH_hydrola 38.2 88 0.0019 26.4 5.8 38 245-288 35-76 (157)
56 COG0420 SbcD DNA repair exonuc 37.6 1.3E+02 0.0027 30.3 7.7 64 230-302 21-87 (390)
57 cd01972 Nitrogenase_VnfE_like 37.4 86 0.0019 32.1 6.5 72 236-317 75-148 (426)
58 TIGR03282 methan_mark_13 putat 37.3 1.3E+02 0.0029 30.3 7.4 70 237-319 62-133 (352)
59 cd07388 MPP_Tt1561 Thermus the 37.0 1.4E+02 0.003 28.0 7.3 56 237-302 19-74 (224)
60 cd03110 Fer4_NifH_child This p 37.0 25 0.00055 30.8 2.3 15 164-178 25-39 (179)
61 cd01981 Pchlide_reductase_B Pc 36.9 1E+02 0.0022 31.5 7.0 57 237-303 72-130 (430)
62 CHL00076 chlB photochlorophyll 36.3 97 0.0021 32.7 6.8 60 236-305 71-132 (513)
63 TIGR00034 aroFGH phospho-2-deh 36.3 1.1E+02 0.0024 30.8 6.8 28 150-180 239-268 (344)
64 PRK07854 enoyl-CoA hydratase; 36.3 1.7E+02 0.0037 27.4 7.9 74 221-298 15-95 (243)
65 COG2047 Uncharacterized protei 35.4 55 0.0012 31.0 4.2 47 250-303 83-129 (258)
66 PRK13233 nifH nitrogenase redu 35.2 38 0.00083 32.1 3.3 16 162-177 30-45 (275)
67 cd01844 SGNH_hydrolase_like_6 35.0 82 0.0018 27.4 5.2 48 244-296 51-100 (177)
68 PRK13234 nifH nitrogenase redu 34.4 34 0.00074 33.1 2.9 24 159-183 28-51 (295)
69 CHL00202 argB acetylglutamate 33.7 1.3E+02 0.0028 29.1 6.7 63 233-302 6-68 (284)
70 PRK10818 cell division inhibit 33.5 45 0.00097 31.4 3.5 19 161-179 29-47 (270)
71 PRK10528 multifunctional acyl- 33.2 1.7E+02 0.0038 26.0 7.2 65 220-295 46-114 (191)
72 cd06558 crotonase-like Crotona 33.0 1.6E+02 0.0034 26.0 6.8 67 231-297 24-101 (195)
73 TIGR01968 minD_bact septum sit 32.6 48 0.001 30.6 3.5 19 159-177 26-44 (261)
74 PRK07511 enoyl-CoA hydratase; 32.3 1.6E+02 0.0035 27.7 7.1 68 231-298 28-107 (260)
75 TIGR02931 anfK_nitrog Fe-only 32.1 1.3E+02 0.0029 31.2 7.0 69 238-317 80-159 (461)
76 PHA02518 ParA-like protein; Pr 31.9 58 0.0013 29.0 3.8 23 158-181 24-46 (211)
77 CHL00073 chlN photochlorophyll 31.8 1.9E+02 0.004 30.3 7.9 56 237-301 84-140 (457)
78 TIGR00583 mre11 DNA repair pro 31.8 1.9E+02 0.004 29.8 7.8 49 231-287 24-72 (405)
79 PRK09674 enoyl-CoA hydratase-i 31.7 1.9E+02 0.0042 27.2 7.5 67 229-298 25-101 (255)
80 cd03466 Nitrogenase_NifN_2 Nit 30.9 1.6E+02 0.0034 30.3 7.2 66 237-313 71-141 (429)
81 PF09936 Methyltrn_RNA_4: SAM- 30.0 3E+02 0.0064 25.3 7.9 25 278-302 121-145 (185)
82 PF09140 MipZ: ATPase MipZ; I 29.9 40 0.00086 32.6 2.4 28 230-259 80-107 (261)
83 cd00229 SGNH_hydrolase SGNH_hy 29.9 1.8E+02 0.0038 23.8 6.3 57 244-300 59-117 (187)
84 COG1692 Calcineurin-like phosp 29.9 2.6E+02 0.0056 27.0 7.8 119 235-363 15-141 (266)
85 cd06167 LabA_like LabA_like pr 29.7 2E+02 0.0044 24.2 6.7 42 249-305 98-139 (149)
86 PRK13232 nifH nitrogenase redu 29.6 54 0.0012 31.1 3.3 21 161-182 27-47 (273)
87 COG1091 RfbD dTDP-4-dehydrorha 29.4 81 0.0018 30.8 4.5 53 242-294 42-97 (281)
88 PRK08138 enoyl-CoA hydratase; 29.4 1.7E+02 0.0038 27.6 6.8 69 229-297 31-106 (261)
89 cd01974 Nitrogenase_MoFe_beta 29.2 1.7E+02 0.0038 29.9 7.2 67 236-313 71-143 (435)
90 PRK07658 enoyl-CoA hydratase; 29.1 2.2E+02 0.0047 26.8 7.4 70 228-298 23-103 (257)
91 TIGR01281 DPOR_bchL light-inde 28.5 44 0.00095 31.5 2.5 20 160-180 25-44 (268)
92 PF02701 zf-Dof: Dof domain, z 28.4 19 0.00042 27.0 0.0 11 144-154 16-26 (63)
93 PRK06495 enoyl-CoA hydratase; 28.2 2E+02 0.0043 27.2 6.9 70 229-298 26-106 (257)
94 PRK12755 phospho-2-dehydro-3-d 28.1 1.8E+02 0.0039 29.4 6.7 30 149-181 245-276 (353)
95 TIGR02016 BchX chlorophyllide 28.0 61 0.0013 31.6 3.4 18 159-176 24-41 (296)
96 TIGR00619 sbcd exonuclease Sbc 27.7 2.7E+02 0.0058 26.3 7.7 56 233-296 23-82 (253)
97 PRK06190 enoyl-CoA hydratase; 27.4 2.6E+02 0.0056 26.5 7.6 68 230-298 28-103 (258)
98 PRK11148 cyclic 3',5'-adenosin 27.4 2.3E+02 0.0051 26.8 7.3 58 235-302 39-97 (275)
99 cd02040 NifH NifH gene encodes 27.2 78 0.0017 29.6 3.9 20 161-181 27-46 (270)
100 PF09383 NIL: NIL domain; Int 27.2 11 0.00024 28.7 -1.5 51 240-290 17-71 (76)
101 cd02067 B12-binding B12 bindin 27.1 1.1E+02 0.0023 25.0 4.4 35 244-289 44-78 (119)
102 cd07402 MPP_GpdQ Enterobacter 26.9 2.3E+02 0.0051 25.7 7.0 61 231-302 20-82 (240)
103 TIGR01287 nifH nitrogenase iro 26.8 53 0.0012 31.1 2.8 19 161-180 26-44 (275)
104 cd01821 Rhamnogalacturan_acety 26.8 1.9E+02 0.0042 25.5 6.3 45 250-295 65-113 (198)
105 PF13277 YmdB: YmdB-like prote 26.4 1.4E+02 0.0031 28.7 5.5 62 235-306 12-73 (253)
106 TIGR02015 BchY chlorophyllide 26.4 2.6E+02 0.0057 28.7 7.9 68 236-315 73-141 (422)
107 PRK04531 acetylglutamate kinas 26.3 1.1E+02 0.0023 31.4 5.0 53 244-304 25-81 (398)
108 TIGR01283 nifE nitrogenase mol 26.3 2.2E+02 0.0048 29.4 7.4 63 237-310 108-172 (456)
109 PRK13185 chlL protochlorophyll 26.1 57 0.0012 30.7 2.8 20 161-181 28-47 (270)
110 TIGR02026 BchE magnesium-proto 25.5 1.7E+02 0.0036 30.7 6.4 44 244-299 57-100 (497)
111 TIGR03189 dienoyl_CoA_hyt cycl 25.5 2.4E+02 0.0051 26.6 6.9 69 229-298 23-98 (251)
112 cd01973 Nitrogenase_VFe_beta_l 25.4 2.6E+02 0.0057 29.0 7.8 65 238-313 74-148 (454)
113 cd01966 Nitrogenase_NifN_1 Nit 24.8 3E+02 0.0066 28.1 8.0 69 237-316 68-142 (417)
114 KOG0835 Cyclin L [General func 24.5 95 0.0021 31.1 4.0 71 257-335 131-212 (367)
115 PRK05862 enoyl-CoA hydratase; 24.3 2.8E+02 0.0061 26.0 7.2 70 229-298 27-103 (257)
116 PF00148 Oxidored_nitro: Nitro 24.2 1.9E+02 0.0042 28.9 6.4 64 236-310 60-125 (398)
117 TIGR02932 vnfK_nitrog V-contai 24.0 2.4E+02 0.0051 29.4 7.1 68 238-316 77-154 (457)
118 cd06533 Glyco_transf_WecG_TagA 23.9 2.3E+02 0.0049 25.1 6.1 46 242-301 91-136 (171)
119 PF00581 Rhodanese: Rhodanese- 23.9 1.3E+02 0.0027 23.5 4.1 18 284-301 91-108 (113)
120 PF06925 MGDG_synth: Monogalac 23.8 81 0.0018 27.6 3.2 24 232-255 71-94 (169)
121 cd01839 SGNH_arylesterase_like 23.6 2.8E+02 0.006 24.6 6.8 36 248-288 77-117 (208)
122 cd01979 Pchlide_reductase_N Pc 23.2 2.1E+02 0.0045 28.9 6.4 71 237-318 74-146 (396)
123 TIGR02370 pyl_corrinoid methyl 23.2 2.1E+02 0.0045 26.0 5.8 37 243-290 128-164 (197)
124 cd02065 B12-binding_like B12 b 23.1 2.2E+02 0.0048 22.9 5.6 14 246-259 46-59 (125)
125 PRK13230 nitrogenase reductase 22.9 78 0.0017 30.1 3.1 21 161-182 27-47 (279)
126 KOG4184 Predicted sugar kinase 22.7 67 0.0015 32.5 2.6 22 235-257 224-245 (478)
127 TIGR00696 wecB_tagA_cpsF bacte 22.5 2.4E+02 0.0052 25.4 6.0 46 243-302 93-138 (177)
128 PLN02825 amino-acid N-acetyltr 22.2 1.9E+02 0.004 30.8 5.9 64 234-305 1-64 (515)
129 PF01656 CbiA: CobQ/CobB/MinD/ 22.0 97 0.0021 27.0 3.3 25 157-182 21-45 (195)
130 PRK07327 enoyl-CoA hydratase; 21.8 2.6E+02 0.0056 26.5 6.5 68 231-298 37-115 (268)
131 PRK06688 enoyl-CoA hydratase; 21.7 3.5E+02 0.0076 25.3 7.3 68 230-297 29-104 (259)
132 PF03808 Glyco_tran_WecB: Glyc 21.7 2.8E+02 0.0061 24.5 6.3 44 244-301 95-138 (172)
133 TIGR03371 cellulose_yhjQ cellu 21.6 96 0.0021 28.4 3.4 16 159-174 26-41 (246)
134 KOG1610 Corticosteroid 11-beta 21.6 3.4E+02 0.0073 27.1 7.1 104 228-338 125-244 (322)
135 PRK10966 exonuclease subunit S 21.5 3.6E+02 0.0078 27.6 7.7 61 233-302 23-86 (407)
136 COG4671 Predicted glycosyl tra 20.9 1.3E+02 0.0028 30.6 4.2 30 229-258 85-114 (400)
137 PLN02512 acetylglutamate kinas 20.8 2.8E+02 0.0061 27.2 6.6 66 231-303 28-93 (309)
138 PRK05995 enoyl-CoA hydratase; 20.8 3.7E+02 0.0079 25.3 7.2 19 279-297 89-107 (262)
139 PRK14478 nitrogenase molybdenu 20.6 4.1E+02 0.0089 27.7 8.1 55 238-302 107-163 (475)
140 cd02032 Bchl_like This family 20.3 83 0.0018 29.6 2.7 19 160-179 25-43 (267)
141 TIGR01279 DPOR_bchN light-inde 20.3 4.2E+02 0.009 27.0 7.9 71 236-317 70-142 (407)
142 PRK10037 cell division protein 20.3 77 0.0017 29.6 2.4 20 159-179 26-45 (250)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-110 Score=806.55 Aligned_cols=356 Identities=66% Similarity=1.206 Sum_probs=348.2
Q ss_pred CCCeEEEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhh
Q 017454 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL 82 (371)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~ 82 (371)
++++|+|+|+++.+.+++|++|||+|.|++++++++..+||.++|++++|..|+.+||.++||++||++|++.++++++.
T Consensus 5 ~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~~ 84 (425)
T KOG1342|consen 5 IKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENMET 84 (425)
T ss_pred CCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hHHhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHHHh
Q 017454 83 FRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY 162 (371)
Q Consensus 83 ~~~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~ 162 (371)
+.+++++|++++|||+|+++|++|++++||||.||++|.+|++++||||+||+|||++++|+||||+|||++||+.|+|.
T Consensus 85 ~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK~ 164 (425)
T KOG1342|consen 85 FNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKY 164 (425)
T ss_pred cchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHHh
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHH
Q 017454 163 HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 242 (371)
Q Consensus 163 ~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l 242 (371)
++||+|||||+|||||+||+||.++||||+|+|+|+..||||||+..++|.++|+.|+|||||.+|++|+.|..+|++++
T Consensus 165 h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi 244 (425)
T KOG1342|consen 165 HKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPII 244 (425)
T ss_pred CCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877999999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCC
Q 017454 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELP 322 (371)
Q Consensus 243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~ 322 (371)
.++++.|+|++||+|||.|++.+|+||+||||.+|+++|+++++++++|+++|+||||+++++||||+++|++++|+.+|
T Consensus 245 ~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~ 324 (425)
T KOG1342|consen 245 SKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQELP 324 (425)
T ss_pred HHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhccCCCcccccCCCCcc--ccHhhhhhhh
Q 017454 323 NEIPENEYIKYFAPECSLRIPNGHIV--CSFKEIDKFI 358 (371)
Q Consensus 323 ~~~p~~~~~~~~~p~~~l~~~~~~~~--~~~~~~~~~~ 358 (371)
+++|+++||++|||||+|++.+++|+ |+.+.+++|.
T Consensus 325 ~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~ 362 (425)
T KOG1342|consen 325 NELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIR 362 (425)
T ss_pred ccCCCccchhhhCCCcccccCccchhcccCHHHHHHHH
Confidence 99999999999999999999999988 4877776664
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=3.4e-105 Score=800.84 Aligned_cols=355 Identities=63% Similarity=1.155 Sum_probs=336.5
Q ss_pred CCCeEEEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhh
Q 017454 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHL 82 (371)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~ 82 (371)
+++||+|+||++++.|.++++|||+|.|+++++++|+++|+..++++++|++|+.++|++|||++||++|++.++.+...
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999877654332
Q ss_pred hHHhhhhcccC--CCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHH
Q 017454 83 FRQELTKYNLG--EDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 160 (371)
Q Consensus 83 ~~~~~~~~~~~--~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~ 160 (371)
....+.+|+++ .|||+++++|++|+++|||||.||+++++|++++|+||+||+|||++++|+|||+||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 22345677887 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHH
Q 017454 161 KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~ 240 (371)
+.++||+|||||||||||||+||+++|+|||+|+|+++. ||||||..+++|.+.|+||++|||||+|++|++|+.+|++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~-ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ 240 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGD-FFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKP 240 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCC-cCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999974 9999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCC-
Q 017454 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT- 319 (371)
Q Consensus 241 ~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~- 319 (371)
+|.|++++|+||+||+|||+|+|.+||||+|+||.+||.+|+++++++++|++++|||||+++++|+||+++|++++|+
T Consensus 241 ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~ 320 (436)
T PTZ00063 241 VISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKH 320 (436)
T ss_pred HHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCCCCCCchhhhccCCCcccccCCCCcc--ccHhhhhhhh
Q 017454 320 -ELPNEIPENEYIKYFAPECSLRIPNGHIV--CSFKEIDKFI 358 (371)
Q Consensus 320 -~~~~~~p~~~~~~~~~p~~~l~~~~~~~~--~~~~~~~~~~ 358 (371)
+++++||+|+||++|+|||+|++++++|. |+++.|++|+
T Consensus 321 ~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~ 362 (436)
T PTZ00063 321 DEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIK 362 (436)
T ss_pred ccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHH
Confidence 69999999999999999999999999888 4777776654
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=4.9e-99 Score=752.35 Aligned_cols=346 Identities=43% Similarity=0.752 Sum_probs=320.7
Q ss_pred CCCeEEEE----EcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCcc
Q 017454 3 SKDKISYF----YDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPD 78 (371)
Q Consensus 3 ~~~~v~~~----~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~ 78 (371)
++++++|| |.+++..+.++++|||+|+|+++++++|+++|+..++++++|++|+.++|++||+++||++|++....
T Consensus 18 ~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 18 SRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 35688999 67777788999999999999999999999999999999999999999999999999999999874322
Q ss_pred chhhhHHhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHH
Q 017454 79 TQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILE 158 (371)
Q Consensus 79 ~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~ 158 (371)
... ...+...+.++.|||+++++|++|+++|||++.||+++++|+.++|+|||||+|||++++|+|||+|||+||||++
T Consensus 98 ~~~-~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~ 176 (429)
T PTZ00346 98 SWL-WNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILE 176 (429)
T ss_pred ccc-cccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHH
Confidence 100 0011223556789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHH
Q 017454 159 LLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLF 238 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~ 238 (371)
|+++++||||||||||||||||+|||+||+|||+|+||++..||||||..+++|.|+|+||++|||||+|++|++|+.+|
T Consensus 177 ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f 256 (429)
T PTZ00346 177 LLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLF 256 (429)
T ss_pred HHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999977799999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhC
Q 017454 239 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 318 (371)
Q Consensus 239 ~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg 318 (371)
+++|.|++++|+||+||||||||+|.+||||+|+||.+||.+|+++++++++|++++|||||++.++++||+++|++|+|
T Consensus 257 ~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~g 336 (429)
T PTZ00346 257 EHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILTG 336 (429)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC--CCC--chhhhccCCCcccccCCCCccc
Q 017454 319 TELPNE--IPE--NEYIKYFAPECSLRIPNGHIVC 349 (371)
Q Consensus 319 ~~~~~~--~p~--~~~~~~~~p~~~l~~~~~~~~~ 349 (371)
+++|++ +|+ .+|.++|+|||+|++.++++.+
T Consensus 337 ~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (429)
T PTZ00346 337 HPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSN 371 (429)
T ss_pred CCCCCCCCCCCCCCchhhhhcCCCccccccccccc
Confidence 999977 784 5789999999999999877764
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.9e-87 Score=655.90 Aligned_cols=325 Identities=34% Similarity=0.511 Sum_probs=300.6
Q ss_pred CeEEEEEcccccCCCCCCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhhhH
Q 017454 5 DKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFR 84 (371)
Q Consensus 5 ~~v~~~~~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~~~ 84 (371)
+++.++|++.+..|..++.|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~---- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG---- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc----
Confidence 4689999999999999999999999999999999999988889999999999999999999999999999876521
Q ss_pred HhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccccccccccCccCCccccCCCCccccchHHHHHHHHHHh-C
Q 017454 85 QELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY-H 163 (371)
Q Consensus 85 ~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~-~ 163 (371)
.+.++.|||+++++|++|++++|++++|++.+++|+...++++.||||||++++++|||+|||+||||++|+++ .
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~ 153 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGV 153 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCC
Confidence 35678999999999999999999999999999999755667777778999999999999999999999999996 6
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHHH
Q 017454 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243 (371)
Q Consensus 164 ~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l~ 243 (371)
+||+|||||||||||||+|||+||+|+|+|+|+++.++|||||..+++|.++ +|+++|||||+|++|++|+.+|+.++.
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~ 232 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVL 232 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999878999999999999999 999999999999999999999999999
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc----CCCEEEEeCCCCCcchHHHHHHHHHhhhhCC
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF----NLPLLVTGGGGYTKENVARCWTVETGILLDT 319 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~----~~p~~~~leGGY~~~~~a~~~~~~~~~llg~ 319 (371)
|++++|+||+||||||||+|.+||||+|+||.++|.+++++++++ ++|+++||||||+.++++++|+.++..|.|.
T Consensus 233 ~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~ 312 (340)
T COG0123 233 PLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGL 312 (340)
T ss_pred HHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998875 5699999999999999999999999999995
Q ss_pred C---CCCCCCCc-hhhhccCCCc
Q 017454 320 E---LPNEIPEN-EYIKYFAPEC 338 (371)
Q Consensus 320 ~---~~~~~p~~-~~~~~~~p~~ 338 (371)
+ .+.++|.. +++..+.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 313 VEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred Cccccccccccchhhhhhhccch
Confidence 4 44445554 5666666665
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=6.7e-83 Score=622.98 Aligned_cols=298 Identities=33% Similarity=0.549 Sum_probs=239.2
Q ss_pred cccccCCCCCCCCCCCchHHHHHHHHHHhC-CCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhhhHHhhhhc
Q 017454 12 DGDVGSVYFGPNHPMKPHRLCMTHHLVLSY-DLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKY 90 (371)
Q Consensus 12 ~~~~~~~~~~~~hpe~p~R~~~i~~~l~~~-gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~~~~ 90 (371)
||+|. |.+++.|||+|+|++.+.+.|++. ++++. ++|+.++|++|||++||++|++.+..............
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 56777 889999999999999888777775 77654 99999999999999999999986543322110000110
Q ss_pred c--c-CCCCCCChhHHHHHHHHHHHHHHHHHHHHccc--ccccccccCccCCccccCCCCccccchHHHHHHHHHHhC--
Q 017454 91 N--L-GEDCPVFENLFEFCQIYAGGTIDAARRLNNQL--CDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH-- 163 (371)
Q Consensus 91 ~--~-~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~--~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~~-- 163 (371)
. + +.|||+++++++++++++|+++.|++++++|+ ..+|+++|| ||||++++++|||+||||||||++|++++
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rpp-gHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPP-GHHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCcc-ccccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 0 1 67999999999999999999999999999994 457777665 49999999999999999999999999953
Q ss_pred CcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCC-CCCCCccccCCCCcccEEeecCCCCCChHHHHHHHHHHH
Q 017454 164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 242 (371)
Q Consensus 164 ~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yP-gtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~~~~~l 242 (371)
+||+|||||||||||||+|||+||+|+|+|||+++..||| +||..+++|.++|+|+++|||||+|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999999878999 999999999999999999999999999999999999999
Q ss_pred HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC----CEEEEeCCCCCcchHHHHHHHHHhhhh
Q 017454 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL----PLLVTGGGGYTKENVARCWTVETGILL 317 (371)
Q Consensus 243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~----p~~~~leGGY~~~~~a~~~~~~~~~ll 317 (371)
.|++++|+||+||||||||++++||+|.++||+++|.++++.++++.. |++++|||||+++++++||+.++++|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998744 999999999999999999999999873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-51 Score=434.07 Aligned_cols=290 Identities=25% Similarity=0.380 Sum_probs=240.5
Q ss_pred CCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccchhhhHHhh-hhcccCCCCCCCh
Q 017454 22 PNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQEL-TKYNLGEDCPVFE 100 (371)
Q Consensus 22 ~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~~~~~~~~-~~~~~~~D~p~~~ 100 (371)
..||+.|.|.. ..+. .|+..+|+.+ ||.++++.||+..|+..+.+...........+. ..++ -..+.+
T Consensus 463 ~~~~~~p~r~~--t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~ 531 (797)
T KOG1343|consen 463 SRSPESPARFT--TGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCG---GIGVDS 531 (797)
T ss_pred cCCcccchhhh--cccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhcccc---ceeecc
Confidence 47899999922 1122 7888888877 999999999999999985421111000000000 0011 112335
Q ss_pred hHHHHHHHHHHHHHHHHHHH--Hcccc--cccccccCccCCccccCCCCccccchHHHHHHHHHHhC--CcEEEEeccCC
Q 017454 101 NLFEFCQIYAGGTIDAARRL--NNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVH 174 (371)
Q Consensus 101 ~~~~~a~~aaG~sl~Aa~~l--~~g~~--~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l~~~~--~RVlivD~DvH 174 (371)
.+|.....++|++..|+..+ +.++. .+|+.+|+| |||....++|||+|||+|+|+++|+... +||+|||||||
T Consensus 532 dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvh 610 (797)
T KOG1343|consen 532 DTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVH 610 (797)
T ss_pred cHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeeccc
Confidence 56777777777777776655 22332 278888877 9999999999999999999999998765 89999999999
Q ss_pred CChhhHHhhhcCCCEEEEecccC-CCCCCCCCCCCccccCCCCcccEEeecCCCCC-ChHHHHHHHHHHHHHhHhhcCCc
Q 017454 175 HGDGVEEAFYFTDRVMTVSFHKF-GDLFFPGTGDVKEIGEREGKFYAINVPLKDGI-DDTSFTRLFKTIISKVVETYAPG 252 (371)
Q Consensus 175 HGnGtq~~f~~d~~Vl~~SiH~~-~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~-~D~~y~~~~~~~l~~~~~~f~Pd 252 (371)
||||||.+|+.+++|+|+|+|++ +.+|||++|..+++|.++|+|+++|||++.+. +|.+|+.+|+.+++|+.++|.||
T Consensus 611 hgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd 690 (797)
T KOG1343|consen 611 HGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPD 690 (797)
T ss_pred CCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCC
Confidence 99999999999999999999999 55699999999999999999999999999655 46999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc-CCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCCC
Q 017454 253 AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPN 323 (371)
Q Consensus 253 ~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~-~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~~ 323 (371)
+|+||+|||+..+||||+..+|.++|+.+++.++.+ ++|+++++||||+..++.++..+++.+|+|.+.|.
T Consensus 691 ~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 691 LVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred eEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999887 78999999999999999999999999999988776
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-44 Score=328.60 Aligned_cols=297 Identities=26% Similarity=0.438 Sum_probs=243.6
Q ss_pred CCCeEEEEEcccccCCCC--CCCCCCCchHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCcHHHHHHHHhcCccch
Q 017454 3 SKDKISYFYDGDVGSVYF--GPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQ 80 (371)
Q Consensus 3 ~~~~v~~~~~~~~~~~~~--~~~hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~e~L~~vHs~~Yv~~l~~~~~~~~ 80 (371)
+..|+.++|+++|.--.. ...||.+..+-..+++.|.+.+++..-.+++|.++|+|+|++|||++|++.|+.......
T Consensus 12 p~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~ 91 (324)
T KOG1344|consen 12 PAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQ 91 (324)
T ss_pred ccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeE
Confidence 345789999999854333 367999999999999999999999998999999999999999999999999987432211
Q ss_pred hhhHHhhhhcccCCCCCCChhHHHHHHHHHHHHHHHHHHHH-cccccccccccCccCCccccCCCCccccchHHHHHHHH
Q 017454 81 HLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLN-NQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILEL 159 (371)
Q Consensus 81 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~-~g~~~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~~l 159 (371)
+ .+..-.+.-+.|.+.+......++.||||+.|++... .| +|||..||+|||..++++|||.+.|+.+||..|
T Consensus 92 --I-~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~G---WAINvGGGFHHcss~rGGGFC~yADItl~I~~l 165 (324)
T KOG1344|consen 92 --I-TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERG---WAINVGGGFHHCSSSRGGGFCAYADITLAIFFL 165 (324)
T ss_pred --E-EeccccccCchhhhhhhhccceeeccCceeehhhhhhhcC---eEEeecCccceeccCCCCceeehhhHHHHHHHH
Confidence 0 1111123345677777788888999999999998754 45 899999999999999999999999999999887
Q ss_pred HHh--CCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHHHH
Q 017454 160 LKY--HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRL 237 (371)
Q Consensus 160 ~~~--~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~~~ 237 (371)
-++ ..|++|||+|+|+|||-|.-|.++ .|..+.+... -.||+.-...+ .--..|.|..|+.|++|+.-
T Consensus 166 Fer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~ynr--~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrk 235 (324)
T KOG1344|consen 166 FERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYNR--FIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRK 235 (324)
T ss_pred HhhhhhhheEEEecccccCCccccccccc-eeehhhhhhh--hccchhHHHHH-------HhhheeeeecCCCchHHHHH
Confidence 665 489999999999999999999988 7777776643 68997543322 12246888899999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHH----HHHHhcCCCEEEEeCCCCCcchHHHHHHHHH
Q 017454 238 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECV----RFVKKFNLPLLVTGGGGYTKENVARCWTVET 313 (371)
Q Consensus 238 ~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~----~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~ 313 (371)
+++.++..+++|+||+||+.||.|.+.|||||.+.+|++|.-++. ++.+..++|++++..|||-..+ |+-.+-.+
T Consensus 236 l~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~s-ArvIaDSI 314 (324)
T KOG1344|consen 236 LKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKAS-ARVIADSI 314 (324)
T ss_pred HHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhh-hhhhHHHH
Confidence 999999999999999999999999999999999999999987754 5557789999999999997654 55544443
Q ss_pred hhh
Q 017454 314 GIL 316 (371)
Q Consensus 314 ~~l 316 (371)
--|
T Consensus 315 ~NL 317 (324)
T KOG1344|consen 315 VNL 317 (324)
T ss_pred HhH
Confidence 333
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-39 Score=340.69 Aligned_cols=313 Identities=20% Similarity=0.218 Sum_probs=262.9
Q ss_pred CeEEEEEcccccCCC--CCCCCC-CCchHHHHHHHHHHhCCCCCCceEeCC-CCCCHHHHhccCcHHHHHHHHhcCccch
Q 017454 5 DKISYFYDGDVGSVY--FGPNHP-MKPHRLCMTHHLVLSYDLHKKMEIYRP-HKAYPVELAQFHSADYVEFLHRITPDTQ 80 (371)
Q Consensus 5 ~~v~~~~~~~~~~~~--~~~~hp-e~p~R~~~i~~~l~~~gl~~~~~~~~p-~~a~~e~L~~vHs~~Yv~~l~~~~~~~~ 80 (371)
+++.++|++....|. -...|+ +.++|++.+.+.+.+.++.+++.+..+ +.++.++++.+|+++|++.+........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 468899999998874 334455 889999999999999998888877776 8999999999999999999876442211
Q ss_pred hhhHHhhhhc-ccCCCCCCChhHHHHHHHHHHHHHHHHHHHHcccc--cccccccCccCCccccCCCCccccchHHHHHH
Q 017454 81 HLFRQELTKY-NLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGIL 157 (371)
Q Consensus 81 ~~~~~~~~~~-~~~~D~p~~~~~~~~a~~aaG~sl~Aa~~l~~g~~--~~ai~~~gG~HHA~~~~a~GFC~~NnvAiAa~ 157 (371)
++ .+... .-.+..+..+.++..+..++|+.+...+.+..|+. ..|..+++| |||.++...|||+|||||++++
T Consensus 109 e~---~l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~ 184 (797)
T KOG1343|consen 109 EE---GLNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRS 184 (797)
T ss_pred hh---hhhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhh
Confidence 11 01111 11234567778889999999999998877766643 356666665 9999999999999999999998
Q ss_pred HHHHhC--CcEEEEeccCCCChhhHHhhhc--CCCEEEEecccC-CCCCCCC--CCCCccccCCCCcccEEeecCC-CCC
Q 017454 158 ELLKYH--ARVLYIDIDVHHGDGVEEAFYF--TDRVMTVSFHKF-GDLFFPG--TGDVKEIGEREGKFYAINVPLK-DGI 229 (371)
Q Consensus 158 ~l~~~~--~RVlivD~DvHHGnGtq~~f~~--d~~Vl~~SiH~~-~~~~yPg--tG~~~~~G~g~g~g~~vNvPL~-~g~ 229 (371)
....++ +||+|+|||+|||+|||..|++ |++|+++|+|++ ...|||. .|..+.+|.|+|.|+++|+|+. .|+
T Consensus 185 ~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~ 264 (797)
T KOG1343|consen 185 SPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGM 264 (797)
T ss_pred ccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCC
Confidence 765554 8999999999999999999999 999999999999 4559998 5777899999999999999997 588
Q ss_pred ChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCC-CCccccCHHHHHHHHHHHHhcC-CCEEEEeCCCCCcchHHH
Q 017454 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDR-LGCFNLSIDGHAECVRFVKKFN-LPLLVTGGGGYTKENVAR 307 (371)
Q Consensus 230 ~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dp-lg~~~ls~~g~~~~~~~l~~~~-~p~~~~leGGY~~~~~a~ 307 (371)
+|.+|..+|..++.|...+|+||++++|||||++.+|| +|.|..|+.+|..+++..+-.+ +++.++++|||+++.+++
T Consensus 265 ~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~ 344 (797)
T KOG1343|consen 265 TDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQ 344 (797)
T ss_pred cchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHH
Confidence 99999999999999999999999999999999999997 6999999999999999855555 899999999999999999
Q ss_pred HHHHHHhhhhCCCCC
Q 017454 308 CWTVETGILLDTELP 322 (371)
Q Consensus 308 ~~~~~~~~llg~~~~ 322 (371)
+ ......++|.+.+
T Consensus 345 ~-~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 345 S-QLVLNKLLGKPIE 358 (797)
T ss_pred h-hhhHHhhcCCCcc
Confidence 8 6677778887654
No 9
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.88 E-value=24 Score=37.76 Aligned_cols=175 Identities=16% Similarity=0.189 Sum_probs=105.0
Q ss_pred CCCccccc--hHHHHHHHHHHhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccE
Q 017454 143 ASGFCYIN--DLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYA 220 (371)
Q Consensus 143 a~GFC~~N--nvAiAa~~l~~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~ 220 (371)
..++|-++ +-+=+|...+...=-| -||+|.|-=|++..+|-..|--.-+|.= =||+|+....+ .|-
T Consensus 313 ~~~~~~~~~~dd~e~a~~I~~d~IdI-LvDl~g~T~d~r~~v~A~RpAPiqvswl-----Gy~aT~g~p~~------DY~ 380 (620)
T COG3914 313 VEKWYPIGRMDDAEIANAIRTDGIDI-LVDLDGHTVDTRCQVFAHRPAPIQVSWL-----GYPATTGSPNM------DYF 380 (620)
T ss_pred hhheeccCCcCHHHHHHHHHhcCCeE-EEeccCceeccchhhhhcCCCceEEeec-----ccccccCCCcc------eEE
Confidence 45788888 4444444444433344 4899999999999999999988888755 36776542221 122
Q ss_pred Eeec--CCCCCChHHHHHHHHHHHHHhHhhcC--------------------CcEEEEecCCCCCCCCCCCccccCHHHH
Q 017454 221 INVP--LKDGIDDTSFTRLFKTIISKVVETYA--------------------PGAIVLQCGADSLAGDRLGCFNLSIDGH 278 (371)
Q Consensus 221 vNvP--L~~g~~D~~y~~~~~~~l~~~~~~f~--------------------Pd~IvvsaG~D~~~~Dplg~~~ls~~g~ 278 (371)
|-=| +|+. ...-|-+.+. ++-+.|+ +|.+|..|| -+.+..+++-+
T Consensus 381 I~D~y~vPp~-ae~yysEkl~----RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~--------~n~~K~~pev~ 447 (620)
T COG3914 381 ISDPYTVPPT-AEEYYSEKLW----RLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCF--------NNYFKITPEVF 447 (620)
T ss_pred eeCceecCch-HHHHHHHHHH----hcccccCCCCCcccCCCCcchhhcCCCCCeEEEEec--------CCcccCCHHHH
Confidence 2222 2332 2333443333 3223333 366777777 45678899999
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCC-----CCCCCCCchhhhccC-CCcccccCC
Q 017454 279 AECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTE-----LPNEIPENEYIKYFA-PECSLRIPN 344 (371)
Q Consensus 279 ~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~-----~~~~~p~~~~~~~~~-p~~~l~~~~ 344 (371)
....+.|+....-++++++||=+.+..++ ..-.+.-.|.+ .-+..|..+++++|+ -|..|+.=|
T Consensus 448 ~~wmqIL~~vP~Svl~L~~~~~~~~~~~~--l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyP 517 (620)
T COG3914 448 ALWMQILSAVPNSVLLLKAGGDDAEINAR--LRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYP 517 (620)
T ss_pred HHHHHHHHhCCCcEEEEecCCCcHHHHHH--HHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeeccc
Confidence 99999999998889999999944332222 11122223322 122345557888887 466666543
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=79.42 E-value=1.6 Score=37.68 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=30.4
Q ss_pred cccCCCCcccc----chHH-HHHHHHHHhC--CcEEEEeccCCCChhhH
Q 017454 139 KKCEASGFCYI----NDLV-LGILELLKYH--ARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 139 ~~~~a~GFC~~----NnvA-iAa~~l~~~~--~RVlivD~DvHHGnGtq 180 (371)
.+-.++|||++ ++-| .|.+|+-... +|++-+|||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 34567999987 4445 4556664432 89999999998777776
No 11
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=78.66 E-value=13 Score=33.78 Aligned_cols=24 Identities=8% Similarity=0.391 Sum_probs=18.4
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecC
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCG 259 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG 259 (371)
..+++++..+.++|++|+||+-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 346677777777888899998776
No 12
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.94 E-value=16 Score=32.31 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=42.1
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHh---cCCCEEEE
Q 017454 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---FNLPLLVT 295 (371)
Q Consensus 221 vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~---~~~p~~~~ 295 (371)
+|...+ |.+-..++..+++.+.+.....+||+|+|..|..=.....-+....+.+.|.+..+.+.. .+.+++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 455553 344556777776666554455899999999997543322111224566666654444322 24566654
No 13
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=70.92 E-value=12 Score=32.52 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=37.0
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEE
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~~~--~~p~~~~ 295 (371)
.+|..+...+ -.+.+..++ ..+..++|++|+++.|. |...+-+ ..-..+.+.++++.+++. +.+++++
T Consensus 25 v~N~Gi~G~~-~~~~~~~~~----~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 25 VVNRGFGGST-LADCLHYFD----RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred eeecCcccch-HHHHHHHHH----hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4666554332 333444443 33456899999999998 6543222 111233455566666654 3455544
No 14
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=70.22 E-value=12 Score=33.00 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=37.4
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHh--cCCCEEEE
Q 017454 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVT 295 (371)
Q Consensus 221 vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~~--~~~p~~~~ 295 (371)
.|+.. .|.+-.+++..+++ +..++||+|++..|. |.....+ ..-..+.+.++++.+++ -+.+++++
T Consensus 44 ~n~g~-~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 44 RLFAK-TGATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLTS---IARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEec-CCcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCCC---HHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 45544 34445566665554 456899999999998 4432211 11112344556666666 35566654
No 15
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=68.61 E-value=19 Score=31.50 Aligned_cols=69 Identities=14% Similarity=0.245 Sum_probs=37.1
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCC-CCCCCccccCHHHHHHHHHHHHhcCCCEEEEe
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLA-GDRLGCFNLSIDGHAECVRFVKKFNLPLLVTG 296 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~-~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~l 296 (371)
.+|..++ |.+-.+++..+++. +...+||+|+++.|..=.. +.++.. -.+.+.++++.+++.+.+++++.
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~~~~~~~---~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIVNTSLEM---IKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHH----HHhcCCCEEEEEeccCccccCCCHHH---HHHHHHHHHHHHHHCCCcEEEEe
Confidence 4554443 33334555555433 3457999999999975322 111111 12334456666666676666654
No 16
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=67.87 E-value=17 Score=31.31 Aligned_cols=65 Identities=15% Similarity=0.248 Sum_probs=37.1
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHhcCCCEEEE
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLVT 295 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~----~~~~~~l~~~~~p~~~~ 295 (371)
.+|.-... .+-...+..+++ .+..++||+|+++.|.. |.... .+.+.| .++++.+++.+.+++++
T Consensus 39 v~n~g~~G-~~~~~~~~~l~~----~~~~~~pd~v~i~~G~N----D~~~~--~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 39 VINAGVSG-DTTAGGLARLPA----LLAQHKPDLVILELGGN----DGLRG--IPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred EEecCcCC-cccHHHHHHHHH----HHHhcCCCEEEEeccCc----ccccC--CCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34555542 222334444443 44558999999999964 32222 344444 45666666667777665
No 17
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=62.31 E-value=25 Score=34.34 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=31.4
Q ss_pred HHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccC----HHHHHHHHHHHHhc
Q 017454 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKF 288 (371)
Q Consensus 240 ~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls----~~g~~~~~~~l~~~ 288 (371)
+.+..++++++||++|+ +|-|+...+.-.-.+|. .+-|-+.++.+++.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ 195 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKY 195 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhc
Confidence 34667889999998765 89999877653333332 23344666766665
No 18
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=62.00 E-value=27 Score=31.66 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=33.5
Q ss_pred CcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEe
Q 017454 251 PGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTG 296 (371)
Q Consensus 251 Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~l 296 (371)
-|+|++ |..|-|.+..+.|.+.++.+.+.+.|+++++
T Consensus 101 aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 101 ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 488886 8999999999999999999999999998886
No 19
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=60.42 E-value=28 Score=30.29 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhcCCCEEEEe
Q 017454 237 LFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVTG 296 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~----~~~~~l~~~~~p~~~~l 296 (371)
.+.+.+..++ .++||+||+..|.. |... -..+.+.|. .+++.++..+.+++++.
T Consensus 55 ~~~~~~~~~~-~~~~d~vii~~G~N----D~~~-~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 55 ILAEQLPAAL-ALRPDLVTLLAGGN----DILR-PGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred HHHHHHHHHH-hcCCCEEEEecccc----cccc-CCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3333344433 47999999999973 2211 134555544 44555554466666553
No 20
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.93 E-value=31 Score=30.08 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=30.4
Q ss_pred HHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhc--CCCEEEEe
Q 017454 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKF--NLPLLVTG 296 (371)
Q Consensus 241 ~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~----~~~~~l~~~--~~p~~~~l 296 (371)
.+.+.+...+||+|+++.|.-=. +....+.+.|. .+++.+++. +.+++++.
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~-----~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEA-----FNKQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCccc-----ccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 34446678999999999995432 22234455444 455556653 45555553
No 21
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=58.65 E-value=23 Score=34.26 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 233 ~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
+|.+.|++.+ |-+..|+-..+||-.|-.+..+| ++ +.+..-...+.+.+.+++++.|||.....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 3677788775 56889999999999998887754 12 22333344455568899999999887553
No 22
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=57.64 E-value=55 Score=26.55 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=33.7
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC--CEEEEeC
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL--PLLVTGG 297 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~--p~~~~le 297 (371)
++|+|+.. +...+.+++.. +...+.+.||+.|+....+ +.....++.+.+++.+. .-+..++
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 48898853 11112222222 2234556788877632221 23333344445555552 4567789
Q ss_pred CCCC
Q 017454 298 GGYT 301 (371)
Q Consensus 298 GGY~ 301 (371)
||++
T Consensus 106 GG~~ 109 (113)
T cd01443 106 GGIK 109 (113)
T ss_pred Chhh
Confidence 9985
No 23
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.31 E-value=41 Score=28.96 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.9
Q ss_pred hcCCcEEEEecCCCCCCCCCCCccccCHHHH----HHHHHHHHh--cCCCEEEE
Q 017454 248 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKK--FNLPLLVT 295 (371)
Q Consensus 248 ~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~----~~~~~~l~~--~~~p~~~~ 295 (371)
..+||+|+++.|.- |-..+ .+++.| .++++.+++ -+.+++++
T Consensus 46 ~~~pd~vvl~~G~N----D~~~~--~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGIN----DLAQG--TSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeecc----CCCCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 67999999999963 32222 344444 445555665 35666654
No 24
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.85 E-value=1.6e+02 Score=26.36 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.0
Q ss_pred HhCCcEEEEeccCCCC
Q 017454 161 KYHARVLYIDIDVHHG 176 (371)
Q Consensus 161 ~~~~RVlivD~DvHHG 176 (371)
+..+||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4568999999999754
No 25
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=54.29 E-value=30 Score=28.18 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=31.1
Q ss_pred HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHH
Q 017454 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVAR 307 (371)
Q Consensus 243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~ 307 (371)
...+.+++||+|.+|+- +.-+.....++.+.+++.+..+.++. ||.......+
T Consensus 44 ~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~-GG~~~t~~~~ 96 (121)
T PF02310_consen 44 VEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVV-GGPHATADPE 96 (121)
T ss_dssp HHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEE-EESSSGHHHH
T ss_pred HHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEE-ECCchhcChH
Confidence 34567789999999875 22233445567777777644444444 4444443333
No 26
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=53.95 E-value=47 Score=34.48 Aligned_cols=69 Identities=13% Similarity=0.254 Sum_probs=43.5
Q ss_pred HHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCcchHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~~~-----~~p~~~~leGGY~~~~~a~~~~ 310 (371)
.+++.|..+.+.|+|++|+|.++ .....||.+ ..+.+.++.. +.|++.+--.||.. +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDV----------AGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccH----------HHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 34445556677799998866544 466677753 3344444332 68999999999976 4555655
Q ss_pred HHHhhh
Q 017454 311 VETGIL 316 (371)
Q Consensus 311 ~~~~~l 316 (371)
.....+
T Consensus 148 ~a~~al 153 (455)
T PRK14476 148 AAVEAI 153 (455)
T ss_pred HHHHHH
Confidence 544443
No 27
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=52.92 E-value=15 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.4
Q ss_pred HHHhCCcEEEEeccCCCCh
Q 017454 159 LLKYHARVLYIDIDVHHGD 177 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGn 177 (371)
|.+..+||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 3345689999999998876
No 28
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=52.71 E-value=46 Score=27.66 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=30.6
Q ss_pred HHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 240 ~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
+.+..+.++++||+|.+|+ +..+.....++.+.+++....+.++. ||.....
T Consensus 29 ~~~~~~~~~~~pdiv~~S~------------~~~~~~~~~~~~~~ik~~~p~~~iv~-GG~~~t~ 80 (127)
T cd02068 29 DIVEDIKELLKPDVVGISL------------MTSAIYEALELAKIAKEVLPNVIVVV-GGPHATF 80 (127)
T ss_pred HHHHHHHHhcCCCEEEEee------------ccccHHHHHHHHHHHHHHCCCCEEEE-CCcchhh
Confidence 3444443449999999984 12233345667788888754445554 5555443
No 29
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=52.34 E-value=43 Score=26.53 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=34.3
Q ss_pred ecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 223 VPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 223 vPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
|=+|||++|.. +.+++.+ | ...+|+|..--+ ++...-.+...++++.+.|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~~--~-----~~g~ivVTTPq~-----------la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQYL--P-----IDGAIVVTTPQE-----------LALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHHH---------SEEEEEE-CCC-------------HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHhC--C-----CCeEEEEeCCHH-----------HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 55799999865 4444432 1 224888887633 5666677888999999999998765
No 30
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=51.49 E-value=69 Score=28.67 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc---CCCEEEEeCCCCC
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGGGGYT 301 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~---~~p~~~~leGGY~ 301 (371)
.++...+|++++.. +.+.+||+||+ +| |... ....+.+.+..+.+.+.++ +.|+.++. |--.
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-GNHD 87 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DLFD-----SNNPSPEALELLIEALRRLKEAGIPVFIIA-GNHD 87 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cccC-----CCCCCHHHHHHHHHHHHHHHHCCCCEEEec-CCCC
Confidence 45677888888764 56679998665 33 4433 2233444445555555544 78887775 4433
No 31
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=49.38 E-value=38 Score=32.98 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=36.5
Q ss_pred HHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccC----HHHHHHHHHHHHhcC--CCEEEEeCC
Q 017454 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKFN--LPLLVTGGG 298 (371)
Q Consensus 240 ~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls----~~g~~~~~~~l~~~~--~p~~~~leG 298 (371)
+.+.+++++++||++|+ +|-|+...+.-...+|. .+-|-++++.+++.. .--+++..|
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAG 206 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAG 206 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcc
Confidence 34667889999998765 89999976544333443 234556777777652 233444444
No 32
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=48.06 E-value=77 Score=27.29 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=36.2
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEE
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 295 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~--~~p~~~~ 295 (371)
.+|..++.. +-..++..++ +.+...+||+|+|..|..=..... ...-..+.+.++.+.+++. +.+++++
T Consensus 26 v~n~g~~G~-t~~~~~~~~~----~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGI-SSRQYLEHIE----PQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEecccccc-cHHHHHHHHH----HHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 467766543 3344444442 334468999999999984332211 1111233445566666653 3445443
No 33
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=47.45 E-value=16 Score=30.77 Aligned_cols=73 Identities=11% Similarity=0.252 Sum_probs=37.0
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhcCCCEEEE
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVT 295 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~----~~~~~l~~~~~p~~~~ 295 (371)
..|.-.+ |.+-..++..++..+.+ +...+||+||++.|..=.... .....+.+.+. ++++.++..+ +++++
T Consensus 33 ~~n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~ 107 (179)
T PF13472_consen 33 VYNLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILV 107 (179)
T ss_dssp EEEEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEe
Confidence 3455553 34455566666665544 588999999999996322221 11223333333 3444444445 77766
Q ss_pred eC
Q 017454 296 GG 297 (371)
Q Consensus 296 le 297 (371)
.-
T Consensus 108 ~~ 109 (179)
T PF13472_consen 108 SP 109 (179)
T ss_dssp E-
T ss_pred cC
Confidence 54
No 34
>PRK13236 nitrogenase reductase; Reviewed
Probab=46.58 E-value=22 Score=34.57 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=18.0
Q ss_pred HhCCcEEEEeccCCCChhhHHhhh
Q 017454 161 KYHARVLYIDIDVHHGDGVEEAFY 184 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~~f~ 184 (371)
+..+||++||.|.+++| |.-++.
T Consensus 32 ~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 32 EMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HCCCcEEEEEccCCCCc-cchhcc
Confidence 45699999999999877 555554
No 35
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=45.03 E-value=1.2e+02 Score=30.83 Aligned_cols=114 Identities=19% Similarity=0.279 Sum_probs=64.7
Q ss_pred HHHHHHHhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCC--ccccCCCCcccEEeecC-------
Q 017454 155 GILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDV--KEIGEREGKFYAINVPL------- 225 (371)
Q Consensus 155 Aa~~l~~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~--~~~G~g~g~g~~vNvPL------- 225 (371)
-..|+.+...|.++||+|+-+|- .-.||+=.. -+.=.+.-+|+.++-||
T Consensus 123 L~nyavk~gr~Plfv~LDvgQ~s----------------------itiPGsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~ 180 (415)
T KOG2749|consen 123 LLNYAVKQGRRPLFVELDVGQGS----------------------ITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNFGLT 180 (415)
T ss_pred HHHHHHHcCCcceEEEcCCCCCc----------------------eecccchhheecccccchhhCcccCCceeeeccCC
Confidence 34577788899999999996651 123332000 00001112344444444
Q ss_pred CCCCChHHHHHHHHHHHHHhHhhc--CCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 226 KDGIDDTSFTRLFKTIISKVVETY--APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 226 ~~g~~D~~y~~~~~~~l~~~~~~f--~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
.+..+-+-|...+.++-.-+-+++ +|+.=+ +| ..=|-.|- .. .+||..+...++.++.-+++|++
T Consensus 181 sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~--sG---~iInT~g~-i~-~egy~~llhai~~f~v~vviVLg 247 (415)
T KOG2749|consen 181 SPSTNLELYKALVSELAEVLKQRLSLNPEARV--SG---CIINTCGW-IE-GEGYAALLHAIKAFEVDVVIVLG 247 (415)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHhccCchhcc--cc---eEEeccce-ec-cccHHHHHHHHHHcCccEEEEec
Confidence 356667788888877655555555 333211 11 00122222 22 78999999988999988888875
No 36
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=43.50 E-value=7.1 Score=37.59 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHhHhhcCCcEEEEecCC---CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEE
Q 017454 242 ISKVVETYAPGAIVLQCGA---DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 295 (371)
Q Consensus 242 l~~~~~~f~Pd~IvvsaG~---D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~ 295 (371)
+..++++++||+||..||+ |..+.+|...+.+...+-..+.+.+...+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 3455677899999999986 55566777666666666777788888888887654
No 37
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=43.05 E-value=49 Score=34.87 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=39.7
Q ss_pred HHHHHHHHhHhhcCCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 237 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
.+++.|..+.++++|++|+|..+. -...||.++. +.+.+...+.|++.+--.||....
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~~ 130 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRKE 130 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccch
Confidence 455566667788999988877765 6666775544 333333226899999888988753
No 38
>PRK05279 N-acetylglutamate synthase; Validated
Probab=42.55 E-value=71 Score=32.78 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 232 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 232 ~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
.+|...|++.+ |-+.+|+=..+||-.|-.+..++ ++ +.+..-...+.+.+.++|+|.|||.....
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 45888888876 55788888899999998887543 12 23334444556668899999999987653
No 39
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=42.47 E-value=84 Score=32.39 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCcchHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~~-----~~~p~~~~leGGY~~~~~a~~~~ 310 (371)
.+++.|..+.++|+|++|+|.++ .....||.+ ..+.+.++. .+.|++.+--.||.. +....+.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 44455566777899998876544 444666644 334444443 378999999999996 3455555
Q ss_pred HHHhhh
Q 017454 311 VETGIL 316 (371)
Q Consensus 311 ~~~~~l 316 (371)
..+..+
T Consensus 147 ~a~~al 152 (432)
T TIGR01285 147 AAVESI 152 (432)
T ss_pred HHHHHH
Confidence 444333
No 40
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=41.71 E-value=75 Score=30.58 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=50.3
Q ss_pred HHHHHHhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecccCCCCCCCCCCCCccccCCCCcccEEeecCCCCCChHHHH
Q 017454 156 ILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFT 235 (371)
Q Consensus 156 a~~l~~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH~~~~~~yPgtG~~~~~G~g~g~g~~vNvPL~~g~~D~~y~ 235 (371)
+.-+..+.+||++||.|+=-|| ...+|--++.-.+ +|.. --+.-..+|+=.... ...+.+ ||.+.+-+++.
T Consensus 25 a~~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv----L~~~~~~~Di~~~~~-~~gl~v-ipg~~~~~~~~ 95 (262)
T COG0455 25 AALAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV----LAGEASIEDIIYETP-QDGLYV-LPGGSGLEDLA 95 (262)
T ss_pred HHHHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH----HhCCCCHhHeeeecC-cCCEEE-eeCCCChHHHh
Confidence 3445556689999999996655 3334444443333 4433 111222222211111 011222 56677777775
Q ss_pred HHHH----HHHHHhHhhcCCcEEEEecCCCCC
Q 017454 236 RLFK----TIISKVVETYAPGAIVLQCGADSL 263 (371)
Q Consensus 236 ~~~~----~~l~~~~~~f~Pd~IvvsaG~D~~ 263 (371)
.+.. .++..+.+.+ |+|++-||.-..
T Consensus 96 ~~~~~~~~~~~~~l~~~~--D~iliD~~aGl~ 125 (262)
T COG0455 96 KLDPEDLEDVIKELEELY--DYILIDTGAGLS 125 (262)
T ss_pred hcCHHHHHHHHHHHHhcC--CEEEEeCCCCcc
Confidence 5433 3444433333 999999986553
No 41
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=41.36 E-value=18 Score=32.31 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHHhHhh--cCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 238 FKTIISKVVET--YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 238 ~~~~l~~~~~~--f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
|+++..++++. -++|+||+ |-+|.|.+...+|.+.+..+.+.+.|+++++-
T Consensus 81 fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~ 133 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLDSNKPVIGVVH 133 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHCTTSEEEEE--
T ss_pred HHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHcCCCcEEEEEe
Confidence 55544455554 58899886 99999999999999999999888888888863
No 42
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=41.26 E-value=46 Score=34.10 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 234 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 234 y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
|...|.+.+ |-++.|+=+.+||=.|-.+..++.+ ..+..-...+.+.+.++++|.|||.....
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~~-------~~~~~~i~~l~~~g~~~vlVHGgg~~i~~ 63 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGNL-------GNIVADIALLHSLGVRLVLVHGARPQIER 63 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCccH-------HHHHHHHHHHHHCCCcEEEEcCCCHHHHH
Confidence 345666664 6688899999999999777754322 13444455567778899999999976543
No 43
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.98 E-value=61 Score=29.07 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCC--CccccCHHH----HHHHHHHHHhcCCCEEE
Q 017454 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL--GCFNLSIDG----HAECVRFVKKFNLPLLV 294 (371)
Q Consensus 233 ~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dpl--g~~~ls~~g----~~~~~~~l~~~~~p~~~ 294 (371)
+.+..|.+. ++..-+|++|+|..|..=...... +.-.++.+. +.++.+.+++.+.++++
T Consensus 60 ~~l~r~~~~---v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 60 SALARFDRD---VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHH---HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 444455432 334457999999999853221110 011234444 45566666766776665
No 44
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=40.83 E-value=1.2e+02 Score=30.92 Aligned_cols=67 Identities=10% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHHhHhhcCCcEEEE-ecCCCCCCCCCCCccccCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCcchHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVL-QCGADSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivv-saG~D~~~~Dplg~~~ls~~g~~~~~~~l~~-----~~~p~~~~leGGY~~~~~a~~~~ 310 (371)
.+.+.|..+.+.++|++|+| ++......||.+ ..+.+.+.. .+.|++.+--.||... ...+|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDV----------AGFIKEFRAEGPEPADFPVVYASTPSFKGS-HETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCH----------HHHHHHHHhhccCCCCCeEEEeeCCCCCCc-HHHHHH
Confidence 34455566777899997654 455566666643 345555553 5788999988888853 334554
Q ss_pred HHHh
Q 017454 311 VETG 314 (371)
Q Consensus 311 ~~~~ 314 (371)
..+.
T Consensus 137 ~a~~ 140 (428)
T cd01965 137 NAVK 140 (428)
T ss_pred HHHH
Confidence 4433
No 45
>CHL00175 minD septum-site determining protein; Validated
Probab=40.73 E-value=30 Score=32.91 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=17.3
Q ss_pred HHHhCCcEEEEeccCCCChhhH
Q 017454 159 LLKYHARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGnGtq 180 (371)
|.+..+||++||.|...||-+.
T Consensus 40 La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 40 IARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred HHhCCCeEEEEeCCCCCCChhh
Confidence 3345689999999999988554
No 46
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.05 E-value=1.9e+02 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=14.9
Q ss_pred HhHhhcCCcEEEEecCCCC
Q 017454 244 KVVETYAPGAIVLQCGADS 262 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~ 262 (371)
..+.+.+||+|+++.|.-=
T Consensus 53 ~~l~~~~pd~vii~~G~ND 71 (200)
T cd01829 53 ELIAEEKPDVVVVFLGAND 71 (200)
T ss_pred HHHhcCCCCEEEEEecCCC
Confidence 3456789999999999743
No 47
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=40.02 E-value=1e+02 Score=31.05 Aligned_cols=70 Identities=16% Similarity=0.319 Sum_probs=44.3
Q ss_pred HHHHHHHHhHhhcCCcEEEEe-cCCCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchHHHHHHHHHh
Q 017454 237 LFKTIISKVVETYAPGAIVLQ-CGADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVETG 314 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivvs-aG~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~a~~~~~~~~ 314 (371)
.+++.+..+.++++|++|+|. +......||.+ ..+.+.+. +.+.|++.+--.||...+....|.....
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~ 143 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDI----------EAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIAND 143 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCH----------HHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHH
Confidence 455566667788999977654 44455555543 33444443 3578999999999987555555554443
Q ss_pred hh
Q 017454 315 IL 316 (371)
Q Consensus 315 ~l 316 (371)
.+
T Consensus 144 al 145 (406)
T cd01967 144 AI 145 (406)
T ss_pred HH
Confidence 33
No 48
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=40.01 E-value=60 Score=26.88 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecCCCC
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCGADS 262 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG~D~ 262 (371)
..+.+.|..++++++|++|+.-...|.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 334455667889999999999988887
No 49
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.85 E-value=1.3e+02 Score=24.35 Aligned_cols=44 Identities=23% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCChhhHHhhhcCCCEEEEecc
Q 017454 152 LVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH 195 (371)
Q Consensus 152 vAiAa~~l~~~~~RVlivD~DvHHGnGtq~~f~~d~~Vl~~SiH 195 (371)
+...+.+|++..-.|-++|.+++..+-.+.+-...|++.-+|.+
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 34445566666678999999999988888888889999999875
No 50
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=39.69 E-value=68 Score=27.89 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=25.5
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHh--cCCCEEEE
Q 017454 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKK--FNLPLLVT 295 (371)
Q Consensus 250 ~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~----~~~~~l~~--~~~p~~~~ 295 (371)
+||+|+++.|..=.....- .-..+.+.|. .+++.+++ -+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQ-PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCC-CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 8999999999753332110 0124555554 44555555 35556655
No 51
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=39.65 E-value=49 Score=29.99 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=26.0
Q ss_pred HhhcCCcEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhc--CCCEEEE
Q 017454 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKF--NLPLLVT 295 (371)
Q Consensus 246 ~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g----~~~~~~~l~~~--~~p~~~~ 295 (371)
+..++|++|||.+|..=.. .. .+.+. +.++++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~----~~--~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIG----HT--TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccC----CC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4568999999999975332 11 14444 44555666654 3444444
No 52
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=39.54 E-value=33 Score=27.77 Aligned_cols=15 Identities=47% Similarity=0.879 Sum_probs=14.0
Q ss_pred CCcEEEEeccCCCCh
Q 017454 163 HARVLYIDIDVHHGD 177 (371)
Q Consensus 163 ~~RVlivD~DvHHGn 177 (371)
.++|+++|.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 53
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=38.81 E-value=27 Score=30.16 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=17.6
Q ss_pred HHHHhCCcEEEEeccCCCChhhH
Q 017454 158 ELLKYHARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 158 ~l~~~~~RVlivD~DvHHGnGtq 180 (371)
.|.++..||++||.|...||-+.
T Consensus 23 ~l~~~g~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 23 ALAQLGYKVVLIDADLGLRNLDL 45 (179)
T ss_pred HHHhCCCeEEEEeCCCCCCCchh
Confidence 34456789999999998876554
No 54
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=38.71 E-value=90 Score=31.99 Aligned_cols=58 Identities=16% Similarity=0.289 Sum_probs=39.3
Q ss_pred HHHHHHHHhHhhcCCcEEEEe-cCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 237 LFKTIISKVVETYAPGAIVLQ-CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivvs-aG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
-+++.|..+.++++|++|+|. +......||.+ ..+.+.+++.+.|++.+--.||....
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi----------~~v~~~~~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDDV----------GAVVSEFQEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCH----------HHHHHHhhhcCCCEEEEECCCcCccc
Confidence 444555566788999977654 44455555543 34555555678999999999999754
No 55
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.25 E-value=88 Score=26.41 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=24.0
Q ss_pred hHhhcCCcEEEEecCCCCCCCCCCCccccCHH----HHHHHHHHHHhc
Q 017454 245 VVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKF 288 (371)
Q Consensus 245 ~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~----g~~~~~~~l~~~ 288 (371)
.+...+||+|+++.|.. |.... .+.+ .+.++++.+++.
T Consensus 35 ~~~~~~pd~vvi~~G~N----D~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 35 WVLAAKPDVVLLHLGTN----DLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred ccccCCCCEEEEeccCc----ccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 45568999999999975 33322 3433 444556666655
No 56
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=37.58 E-value=1.3e+02 Score=30.26 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHh---cCCCEEEEeCCCCCc
Q 017454 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---FNLPLLVTGGGGYTK 302 (371)
Q Consensus 230 ~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~---~~~p~~~~leGGY~~ 302 (371)
-.+++..+|.+++. ++.+-++|+||++ ||=+=.-+.|++.-....+.++. .++|++++ .|--+.
T Consensus 21 r~~d~~~~f~~~l~-~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I-~GNHD~ 87 (390)
T COG0420 21 RLEDQKKAFDELLE-IAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI-AGNHDS 87 (390)
T ss_pred chHHHHHHHHHHHH-HHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe-cCCCCc
Confidence 35678889988876 5677889999864 67666677777776666555555 46898887 455443
No 57
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.44 E-value=86 Score=32.07 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=46.6
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchHHHHHHHHH
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVET 313 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~a~~~~~~~ 313 (371)
..+++.|..+.++++|++|+|..+ .....||.+ ..+.+.++ +.+.|++.+--.||...+....+....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi----------~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDV----------ESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCH----------HHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 355566667788899998777654 344444432 33455444 458999999999999855555555544
Q ss_pred hhhh
Q 017454 314 GILL 317 (371)
Q Consensus 314 ~~ll 317 (371)
..++
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 4444
No 58
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=37.35 E-value=1.3e+02 Score=30.27 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC-CCCCcchHHHHHHHHHh
Q 017454 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG-GGYTKENVARCWTVETG 314 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le-GGY~~~~~a~~~~~~~~ 314 (371)
.+++.+..+.+.|+|++|+|..+ .-...||.+ ..+.+.. +.+.|++.+-- ||+ .++ ...+...+.
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDI----------eaVvkE~-~~giPVI~V~t~GGf-Gdn-~~G~~~aLe 128 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGEDL----------KEAVDEA-DVDAEVIAVEVHAGF-GDN-TEGVIATLE 128 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCCH----------HHHHHHh-CCCCCEEEEECCCCC-ccH-HHHHHHHHH
Confidence 45556666788999998877655 334455533 2333333 46889999965 888 333 444444444
Q ss_pred hhhCC
Q 017454 315 ILLDT 319 (371)
Q Consensus 315 ~llg~ 319 (371)
.+..+
T Consensus 129 Aiidq 133 (352)
T TIGR03282 129 SAAEA 133 (352)
T ss_pred HHHHh
Confidence 44443
No 59
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.01 E-value=1.4e+02 Score=28.02 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 237 LFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
+++.++. .+++-+||+||++ || +.......+.+..+.+.+.+++.|++++. |--+.
T Consensus 19 ~le~l~~-~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~-GNhD~ 74 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVP-GPQDA 74 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEc-CCCCh
Confidence 4444443 3455689988753 45 32333456778888888888888998775 66664
No 60
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=36.97 E-value=25 Score=30.81 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.1
Q ss_pred CcEEEEeccCCCChh
Q 017454 164 ARVLYIDIDVHHGDG 178 (371)
Q Consensus 164 ~RVlivD~DvHHGnG 178 (371)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 799999999998664
No 61
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=36.90 E-value=1e+02 Score=31.50 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=38.4
Q ss_pred HHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcc
Q 017454 237 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKE 303 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~ 303 (371)
.+++.|..+.++++|++|+|... .....||.+ ..+.+.+. +.+.|++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHhhhccCCCeEEecCCCccch
Confidence 34445556677899998877665 566666654 23444443 35889999999999864
No 62
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=36.33 E-value=97 Score=32.74 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecCCCC-CCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchH
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCGADS-LAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENV 305 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG~D~-~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~ 305 (371)
..+.+.|..+.++|+|++|+|.++.=+ .-||. ...+.+.+. ..+.|++.+--.||.....
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDD----------i~~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQED----------LQNFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhcC----------HHHHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 344455666788899999999876322 22232 233444443 3678999999999997554
No 63
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=36.33 E-value=1.1e+02 Score=30.81 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHhC--CcEEEEeccCCCChhhH
Q 017454 150 NDLVLGILELLKYH--ARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 150 NnvAiAa~~l~~~~--~RVlivD~DvHHGnGtq 180 (371)
.|++-+...+.+.. .||+ +|.=||||..
T Consensus 239 ~di~~~~~~l~~~~lp~~vm---VD~SH~ns~k 268 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM---IDFSHGNSNK 268 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE---EeCCCccccc
Confidence 57776666655544 4555 4778999964
No 64
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=36.25 E-value=1.7e+02 Score=27.36 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=37.8
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEE
Q 017454 221 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLL 293 (371)
Q Consensus 221 vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~ 293 (371)
+|=|=....=+.+.+..+.+.+..+.+. ...+||+ ++|.|...... .-.+ .+....+.+.+..+..|+|
T Consensus 15 lnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~-~~~~~~~~~~l~~~~kP~I 90 (243)
T PRK07854 15 LQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDF-PDALIEMLHAIDAAPVPVI 90 (243)
T ss_pred eCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHH-HHHHHHHHHHHHhCCCCEE
Confidence 3444333344556666666666654433 5556665 45666542100 0000 1112344556677889999
Q ss_pred EEeCC
Q 017454 294 VTGGG 298 (371)
Q Consensus 294 ~~leG 298 (371)
....|
T Consensus 91 aav~G 95 (243)
T PRK07854 91 AAING 95 (243)
T ss_pred EEecC
Confidence 87753
No 65
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=35.39 E-value=55 Score=31.02 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q 017454 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (371)
Q Consensus 250 ~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~ 303 (371)
++|+||+.- |.-..++.|++.|+. .+.+.++.++.+.+..| |||...
T Consensus 83 ~~Dliil~G--d~Q~~~~~gqyel~~----~~Ld~a~e~g~~~IyTL-GGy~vG 129 (258)
T COG2047 83 ERDLIILVG--DTQATSSEGQYELTG----KILDIAKEFGARMIYTL-GGYGVG 129 (258)
T ss_pred CCcEEEEec--cccccCcchhHHHHH----HHHHHHHHcCCcEEEEe-cCcccC
Confidence 457877643 555577777777753 46677788898888887 778643
No 66
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=35.21 E-value=38 Score=32.06 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=13.2
Q ss_pred hCCcEEEEeccCCCCh
Q 017454 162 YHARVLYIDIDVHHGD 177 (371)
Q Consensus 162 ~~~RVlivD~DvHHGn 177 (371)
..+||++||+|.+..+
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998644
No 67
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.00 E-value=82 Score=27.45 Aligned_cols=48 Identities=10% Similarity=0.371 Sum_probs=29.3
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhc--CCCEEEEe
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 296 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~--~~p~~~~l 296 (371)
..+...+||+|++..|..=...+ .-..+.+..+++.+++. +.|++++.
T Consensus 51 ~~~~~~~pd~vii~~G~ND~~~~-----~~~~~~~~~~i~~i~~~~p~~~iil~~ 100 (177)
T cd01844 51 ELLRDVPADLYIIDCGPNIVGAE-----AMVRERLGPLVKGLRETHPDTPILLVS 100 (177)
T ss_pred HHHHhcCCCEEEEEeccCCCccH-----HHHHHHHHHHHHHHHHHCcCCCEEEEe
Confidence 44566899999999997632211 11234555667777665 34666543
No 68
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=34.41 E-value=34 Score=33.15 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHhCCcEEEEeccCCCChhhHHhh
Q 017454 159 LLKYHARVLYIDIDVHHGDGVEEAF 183 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGnGtq~~f 183 (371)
|.+..+||++||.|.+..+ |+-+|
T Consensus 28 la~~g~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHHCCCeEEEEeccccccc-ccccc
Confidence 4455789999999998655 44333
No 69
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=33.65 E-value=1.3e+02 Score=29.13 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 233 ~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
+....|++.+ |-+++|+=+.+||=.|-++..++.+ .+.+.+=...+.+.+.++++|.|||...
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i 68 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEI 68 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 4466777765 6688899899999999777654432 1123333444567788999999999854
No 70
>PRK10818 cell division inhibitor MinD; Provisional
Probab=33.45 E-value=45 Score=31.39 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.5
Q ss_pred HhCCcEEEEeccCCCChhh
Q 017454 161 KYHARVLYIDIDVHHGDGV 179 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGt 179 (371)
++.+||++||+|.+.||-+
T Consensus 29 ~~g~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRNLD 47 (270)
T ss_pred HCCCeEEEEECCCCCCChh
Confidence 4468999999999888744
No 71
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=33.22 E-value=1.7e+02 Score=25.96 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=36.4
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHH----HHHHHHHHHhcCCCEEEE
Q 017454 220 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLVT 295 (371)
Q Consensus 220 ~vNvPL~~g~~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g----~~~~~~~l~~~~~p~~~~ 295 (371)
.+|..++..++ ...+..|++ .+...+||+|+++.|.- |... .++.+. +..+.+.+++.+.+++++
T Consensus 46 v~N~Gi~G~tt-~~~~~rl~~----~l~~~~pd~Vii~~GtN----D~~~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 46 VVNASISGDTS-QQGLARLPA----LLKQHQPRWVLVELGGN----DGLR--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred EEecCcCcccH-HHHHHHHHH----HHHhcCCCEEEEEeccC----cCcc--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56665543332 233444443 44567999999999974 4332 345544 445556666655554443
No 72
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=32.98 E-value=1.6e+02 Score=25.95 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEEec-------CCCCCCCCCCCcc----ccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVLQC-------GADSLAGDRLGCF----NLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~Ivvsa-------G~D~~~~Dplg~~----~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
+.+.+..+.+.+..+-+.-...+||+.. |.|...--..... .--...+..+.+.+..+.+|++++..
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~ 101 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVN 101 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 4566666667776655555667777744 4443211000000 00012233455666677899998875
No 73
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=32.56 E-value=48 Score=30.63 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHHhCCcEEEEeccCCCCh
Q 017454 159 LLKYHARVLYIDIDVHHGD 177 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGn 177 (371)
|.+...||++||.|...||
T Consensus 26 la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 26 LARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHcCCeEEEEECCCCCCC
Confidence 4455689999999997665
No 74
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=32.33 E-value=1.6e+02 Score=27.68 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCC-----CCCCccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAG-----DRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~-----Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
+.+.+..+.+.+..+.+.-+..+||+ ++|.|...- ++.....-....+..+...+..+..|+|+...|
T Consensus 28 ~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G 107 (260)
T PRK07511 28 HPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEG 107 (260)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 45566666666654332223334655 455664321 111110001122334555667778999887754
No 75
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=32.11 E-value=1.3e+02 Score=31.19 Aligned_cols=69 Identities=7% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHhHhhc-CCcEE-EEecCCCCCCCCCCCccccCHHHHHHHHHHHHh---------cCCCEEEEeCCCCCcchHH
Q 017454 238 FKTIISKVVETY-APGAI-VLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---------FNLPLLVTGGGGYTKENVA 306 (371)
Q Consensus 238 ~~~~l~~~~~~f-~Pd~I-vvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~---------~~~p~~~~leGGY~~~~~a 306 (371)
+++.+..+.+.| +|++| |++++.....||.+. .+.+.+++ .+.|++.+-.+||... ..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~----------~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs-~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVD----------GLISKLNEELLKEKFPDREVHLIPIHTPSFVGS-MI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHH----------HHHHHHHhhhcccccCCCCCeEEEeeCCCCCCc-HH
Confidence 556666777889 59986 667777778887542 23333321 2467888888888763 45
Q ss_pred HHHHHHHhhhh
Q 017454 307 RCWTVETGILL 317 (371)
Q Consensus 307 ~~~~~~~~~ll 317 (371)
..|...+..++
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 76
>PHA02518 ParA-like protein; Provisional
Probab=31.95 E-value=58 Score=29.00 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHhCCcEEEEeccCCCChhhHH
Q 017454 158 ELLKYHARVLYIDIDVHHGDGVEE 181 (371)
Q Consensus 158 ~l~~~~~RVlivD~DvHHGnGtq~ 181 (371)
+|.++.+||++||.|. +++-++.
T Consensus 24 ~la~~g~~vlliD~D~-q~~~~~~ 46 (211)
T PHA02518 24 WLHADGHKVLLVDLDP-QGSSTDW 46 (211)
T ss_pred HHHhCCCeEEEEeCCC-CCChHHH
Confidence 3445568999999996 5565553
No 77
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.84 E-value=1.9e+02 Score=30.32 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=37.5
Q ss_pred HHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCC
Q 017454 237 LFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYT 301 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~ 301 (371)
-+++++..++++|+|++|+|-++.= -+-..... ..+.+.+. +.++|||.+-..|+.
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~------t~iIGdDl---e~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCT------TEIIKMDL---EGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCc------HHhhccCH---HHHHHHHHHhhCCCEEEEeCCCcc
Confidence 3445666788899999999987732 22222222 23444443 569999999999998
No 78
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=31.84 E-value=1.9e+02 Score=29.78 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHh
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK 287 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~ 287 (371)
..+...+|++++. ++.+-+||+||++ ||=.-.-.-|.+....+.+.+++
T Consensus 24 ~~D~~~~f~eil~-~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQ-IAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 3567788998876 4677899999864 55554445566666666666653
No 79
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=31.73 E-value=1.9e+02 Score=27.20 Aligned_cols=67 Identities=19% Similarity=0.239 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCC---CCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLA---GDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~---~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
.=+.+.+..+.+.+..+-..-+.-+||+ ++|.|... .|.... + .+.+..+.+.+..+..|+|+...|
T Consensus 25 al~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~-~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK09674 25 ALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAAT--L-NDPRPQLWQRLQAFNKPLIAAVNG 101 (255)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhh--H-HHHHHHHHHHHHhCCCCEEEEECC
Confidence 3356666677777665433333345665 45555432 111000 0 112234556677788999877643
No 80
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=30.89 E-value=1.6e+02 Score=30.27 Aligned_cols=66 Identities=15% Similarity=0.271 Sum_probs=39.0
Q ss_pred HHHHHHHHhHhhcCCcEEEE-ecCCCCCCCCCCCccccCHHHHHHHHHHHHh----cCCCEEEEeCCCCCcchHHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVL-QCGADSLAGDRLGCFNLSIDGHAECVRFVKK----FNLPLLVTGGGGYTKENVARCWTV 311 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivv-saG~D~~~~Dplg~~~ls~~g~~~~~~~l~~----~~~p~~~~leGGY~~~~~a~~~~~ 311 (371)
.+++.|..+.++++|++|+| ++......||.+ ..+.+.+.. .+.|++.+--.||.. +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi----------~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGEDV----------PRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCH----------HHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 44555666778899997655 445555666643 334444443 356788877788864 33344443
Q ss_pred HH
Q 017454 312 ET 313 (371)
Q Consensus 312 ~~ 313 (371)
..
T Consensus 140 a~ 141 (429)
T cd03466 140 AV 141 (429)
T ss_pred HH
Confidence 33
No 81
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=29.95 E-value=3e+02 Score=25.30 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 278 HAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 278 ~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
|.++-+++.+...|+++++|=|+.+
T Consensus 121 ~~~lr~~l~~~~~P~LllFGTGwGL 145 (185)
T PF09936_consen 121 YAELRRMLEEEDRPVLLLFGTGWGL 145 (185)
T ss_dssp HHHHHHHHHH--S-EEEEE--TT--
T ss_pred HHHHHHHHhccCCeEEEEecCCCCC
Confidence 5667777777788999998866654
No 82
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=29.95 E-value=40 Score=32.55 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=16.8
Q ss_pred ChHHHHHHHHHHHHHhHhhcCCcEEEEecC
Q 017454 230 DDTSFTRLFKTIISKVVETYAPGAIVLQCG 259 (371)
Q Consensus 230 ~D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG 259 (371)
++......|++.+..+ + -+-|+|||-|-
T Consensus 80 ~~~~~~~~L~q~l~~l-~-~~~DfLVID~P 107 (261)
T PF09140_consen 80 GENVEDKRLEQALADL-E-GDLDFLVIDTP 107 (261)
T ss_dssp -HHHHHHHHHHHHHHH-H-HH-SEEEEEE-
T ss_pred CcchhHHHHHHHHHHH-h-cCCCEEEEeCC
Confidence 3445556777777654 3 47799998775
No 83
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.94 E-value=1.8e+02 Score=23.78 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=31.7
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVTGGGGY 300 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~--~~~p~~~~leGGY 300 (371)
..+...+||+|+++.|..=....+........+.+.++.+.+++ -+.+++++.---+
T Consensus 59 ~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~ 117 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITPPPP 117 (187)
T ss_pred hhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCC
Confidence 45677999999999986432222101122233345556666663 3566666654333
No 84
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=29.88 E-value=2.6e+02 Score=27.01 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHh
Q 017454 235 TRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETG 314 (371)
Q Consensus 235 ~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~ 314 (371)
+.++++-|..+..+|++|+|++.+ ..--|++.+|.+- .+.+++.+.-++.++.-=|..+.+-.-......
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~------ENaa~G~Git~k~----y~~l~~~G~dviT~GNH~wd~~ei~~~i~~~~~ 84 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNG------ENAAGGFGITEKI----YKELLEAGADVITLGNHTWDQKEILDFIDNADR 84 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcC------ccccCCcCCCHHH----HHHHHHhCCCEEecccccccchHHHHHhhcccc
Confidence 456677788888999999999876 4556788898754 455677788888876665654433222222222
Q ss_pred hhhCCCCCCCCCCchhhhccCCCcccccC--------CCCccccHhhhhhhhhccce
Q 017454 315 ILLDTELPNEIPENEYIKYFAPECSLRIP--------NGHIVCSFKEIDKFILFNKQ 363 (371)
Q Consensus 315 ~llg~~~~~~~p~~~~~~~~~p~~~l~~~--------~~~~~~~~~~~~~~~~~~~~ 363 (371)
++-=...|+..|-.-|.-+.--+=++.+- +..+.|-++..++++..++-
T Consensus 85 ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~ 141 (266)
T COG1692 85 ILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIKL 141 (266)
T ss_pred eeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCcc
Confidence 22212244555544322111111122211 11355677777777776654
No 85
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=29.69 E-value=2e+02 Score=24.17 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=32.0
Q ss_pred cCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchH
Q 017454 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 305 (371)
Q Consensus 249 f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~ 305 (371)
-++|.|++.+| |+ +|....+.+++.|.+++++.-.+-....+
T Consensus 98 ~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 98 RRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred cCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccChHHH
Confidence 38999999998 54 57788999999999998887664443333
No 86
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=29.58 E-value=54 Score=31.06 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=15.9
Q ss_pred HhCCcEEEEeccCCCChhhHHh
Q 017454 161 KYHARVLYIDIDVHHGDGVEEA 182 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~~ 182 (371)
++.+||++||.|.+..+ |.-+
T Consensus 27 ~~G~rVllvD~Dpq~~~-~~~l 47 (273)
T PRK13232 27 TMGNKILLVGCDPKADS-TRML 47 (273)
T ss_pred hhCCCeEEEeccccccc-chhh
Confidence 45689999999998765 4443
No 87
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=29.45 E-value=81 Score=30.81 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=42.1
Q ss_pred HHHhHhhcCCcEEEEecC---CCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEE
Q 017454 242 ISKVVETYAPGAIVLQCG---ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLV 294 (371)
Q Consensus 242 l~~~~~~f~Pd~IvvsaG---~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~ 294 (371)
+..++++.+||+||-.|. +|..+.+|.-.+.+-..+-..+.+...+.+.++|-
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVh 97 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVH 97 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEE
Confidence 456677889999999987 48888888878888777777778877887877653
No 88
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=29.39 E-value=1.7e+02 Score=27.58 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=31.6
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
.=+.+.+..+.+.+..+...-+..+||+ ++|.|...--..............+.+.+..+..|+|+...
T Consensus 31 al~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 106 (261)
T PRK08138 31 ALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVN 106 (261)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 3456666666666665433323344555 33444321000000000011123345556677889887653
No 89
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.25 E-value=1.7e+02 Score=29.95 Aligned_cols=67 Identities=12% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHhhcCCcEEEEe-cCCCCCCCCCCCccccCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCcchHHHHH
Q 017454 236 RLFKTIISKVVETYAPGAIVLQ-CGADSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVARCW 309 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~Ivvs-aG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~-----~~p~~~~leGGY~~~~~a~~~ 309 (371)
..+++.|..+.++++|++|+|. +......||.+ ..+.+.++.. +.|++.+--.||.. +....|
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi----------~~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~ 139 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDL----------NAFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGY 139 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhccH----------HHHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHH
Confidence 3455556667888999976554 44555555543 2344444322 56788887778875 334444
Q ss_pred HHHH
Q 017454 310 TVET 313 (371)
Q Consensus 310 ~~~~ 313 (371)
....
T Consensus 140 ~~a~ 143 (435)
T cd01974 140 DNMV 143 (435)
T ss_pred HHHH
Confidence 4333
No 90
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=29.11 E-value=2.2e+02 Score=26.77 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCCCCCCccccCH----HHHHHHHHHHHhcCCCEEEEe
Q 017454 228 GIDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVTG 296 (371)
Q Consensus 228 g~~D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~Dplg~~~ls~----~g~~~~~~~l~~~~~p~~~~l 296 (371)
..=+.+.+..+.+.+..+...-+..+||+ ++|.|...-.....- -.. .....+.+.+..+..|+|...
T Consensus 23 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~kpvIAav 101 (257)
T PRK07658 23 NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEA-EQATELAQLGQVTFERVEKFSKPVIAAI 101 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCch-hhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34466777777777766544334445655 455554321000000 001 112234555667788998766
Q ss_pred CC
Q 017454 297 GG 298 (371)
Q Consensus 297 eG 298 (371)
.|
T Consensus 102 ~G 103 (257)
T PRK07658 102 HG 103 (257)
T ss_pred cC
Confidence 44
No 91
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.45 E-value=44 Score=31.47 Aligned_cols=20 Identities=35% Similarity=0.283 Sum_probs=15.3
Q ss_pred HHhCCcEEEEeccCCCChhhH
Q 017454 160 LKYHARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 160 ~~~~~RVlivD~DvHHGnGtq 180 (371)
.++.+||++||.|. +||-|+
T Consensus 25 a~~g~rVLliD~D~-q~~~~~ 44 (268)
T TIGR01281 25 AKLGKRVLQIGCDP-KHDSTF 44 (268)
T ss_pred HhCCCeEEEEecCc-cccccc
Confidence 35578999999997 466554
No 92
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=28.42 E-value=19 Score=27.03 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=8.1
Q ss_pred CCccccchHHH
Q 017454 144 SGFCYINDLVL 154 (371)
Q Consensus 144 ~GFC~~NnvAi 154 (371)
--|||+||--+
T Consensus 16 TKFcYyNNy~~ 26 (63)
T PF02701_consen 16 TKFCYYNNYNL 26 (63)
T ss_pred CEEEeecCCCC
Confidence 45999999643
No 93
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=28.20 E-value=2e+02 Score=27.15 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEEe-------cCCCCCCCCCC----CccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAGDRL----GCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivvs-------aG~D~~~~Dpl----g~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
.=+.+.+..+.+.+..+.+.-...+||+. +|.|...-... ....-..+.+.++.+.+..+..|+|....
T Consensus 26 al~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 105 (257)
T PRK06495 26 ALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVN 105 (257)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 34666777777777655443344456653 34443321000 00000011223345556677889887764
Q ss_pred C
Q 017454 298 G 298 (371)
Q Consensus 298 G 298 (371)
|
T Consensus 106 G 106 (257)
T PRK06495 106 G 106 (257)
T ss_pred C
Confidence 3
No 94
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.05 E-value=1.8e+02 Score=29.41 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHhC--CcEEEEeccCCCChhhHH
Q 017454 149 INDLVLGILELLKYH--ARVLYIDIDVHHGDGVEE 181 (371)
Q Consensus 149 ~NnvAiAa~~l~~~~--~RVlivD~DvHHGnGtq~ 181 (371)
-+++..++..+.+.. .+|+ +|.=|||+-.+
T Consensus 245 ~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~ 276 (353)
T PRK12755 245 AASVAACEAQLEKAGLRPRLM---IDCSHANSGKD 276 (353)
T ss_pred HHHHHHHHHHHHHcCCCCcEE---ecCCccccccc
Confidence 478888887777754 5666 58899999763
No 95
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=27.97 E-value=61 Score=31.56 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.2
Q ss_pred HHHhCCcEEEEeccCCCC
Q 017454 159 LLKYHARVLYIDIDVHHG 176 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHG 176 (371)
|.+..+||++||+|...+
T Consensus 24 La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 24 MAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred HHHCCCeEEEEEecCCCC
Confidence 334578999999999864
No 96
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.70 E-value=2.7e+02 Score=26.30 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHH---HHHHHHHHHHhcC-CCEEEEe
Q 017454 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID---GHAECVRFVKKFN-LPLLVTG 296 (371)
Q Consensus 233 ~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~---g~~~~~~~l~~~~-~p~~~~l 296 (371)
+....|+.++. .+.+.+||+|+++ ||=.-...-+.. -+.+..+.+++.+ +|++++.
T Consensus 23 ~~~~~l~~l~~-~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~ 82 (253)
T TIGR00619 23 EQKAFLDDLLE-FAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVIS 82 (253)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 34556776665 5667899998864 343333222322 2344555566666 7888775
No 97
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=27.39 E-value=2.6e+02 Score=26.53 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCCCCC-CccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 230 DDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRL-GCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 230 ~D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~Dpl-g~~~ls~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
=+.+.+..+.+.+..+-..=...+||+ ++|.|...-... .... .......+.+.+..+..|+|+...|
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~-~~~~~~~~~~~i~~~~kPvIAaV~G 103 (258)
T PRK06190 28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYG-AQDALPNPSPAWPAMRKPVIGAING 103 (258)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhh-HHHHHHHHHHHHHhCCCCEEEEECC
Confidence 356666666666665433223334555 445554321000 0000 0112334556677788999876643
No 98
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=27.35 E-value=2.3e+02 Score=26.78 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHhh-cCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 235 TRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 235 ~~~~~~~l~~~~~~-f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
...|+.++..+.+. -+||+||++ | |... .-+.+.|..+.+.+.+++.|+.++. |--+.
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-G-Dl~~-------~~~~~~~~~~~~~l~~l~~Pv~~v~-GNHD~ 97 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-G-DLAQ-------DHSSEAYQHFAEGIAPLRKPCVWLP-GNHDF 97 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-C-CCCC-------CCCHHHHHHHHHHHhhcCCcEEEeC-CCCCC
Confidence 44566666655443 579997754 2 2221 1245778888888888899987775 55443
No 99
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=27.23 E-value=78 Score=29.56 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=15.3
Q ss_pred HhCCcEEEEeccCCCChhhHH
Q 017454 161 KYHARVLYIDIDVHHGDGVEE 181 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~ 181 (371)
++.+||++||.|. +||-+..
T Consensus 27 ~~G~kVlliD~Dp-q~n~~~~ 46 (270)
T cd02040 27 EMGKKVMIVGCDP-KADSTRL 46 (270)
T ss_pred hCCCeEEEEEcCC-CCCchhh
Confidence 4568999999998 4665654
No 100
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=27.20 E-value=11 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.415 Sum_probs=39.7
Q ss_pred HHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCH----HHHHHHHHHHHhcCC
Q 017454 240 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNL 290 (371)
Q Consensus 240 ~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~----~g~~~~~~~l~~~~~ 290 (371)
+++..+.++|+-++=+++++.|...+.|+|.|-+.. +...+..+++++.+.
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 467788899999999999999999999999986654 335566677776553
No 101
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.14 E-value=1.1e+02 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=23.0
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcC
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFN 289 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~ 289 (371)
..+.+.+||+|.+|+-.+. +.....++.+.+++.+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcC
Confidence 3466789999999875222 2233456777777764
No 102
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=26.87 E-value=2.3e+02 Score=25.69 Aligned_cols=61 Identities=10% Similarity=0.239 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHhHhhc--CCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 231 DTSFTRLFKTIISKVVETY--APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f--~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
+......|+.++..+ ++. +||+||+. | |=... -+.+.|..+.+.+.+++.|++++. |--..
T Consensus 20 ~~~~~~~l~~~~~~i-~~~~~~~d~vi~~-G------Dl~~~--~~~~~~~~~~~~l~~~~~p~~~v~-GNHD~ 82 (240)
T cd07402 20 GVDTAASLEAVLAHI-NALHPRPDLVLVT-G------DLTDD--GSPESYERLRELLAALPIPVYLLP-GNHDD 82 (240)
T ss_pred CcCHHHHHHHHHHHH-HhcCCCCCEEEEC-c------cCCCC--CCHHHHHHHHHHHhhcCCCEEEeC-CCCCC
Confidence 445566777777654 444 89977643 3 42211 134556677777777889988775 54443
No 103
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=26.83 E-value=53 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=14.1
Q ss_pred HhCCcEEEEeccCCCChhhH
Q 017454 161 KYHARVLYIDIDVHHGDGVE 180 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq 180 (371)
++.+||++||.|.+ ||.|.
T Consensus 26 ~~G~~VlliD~D~q-~~~~~ 44 (275)
T TIGR01287 26 EMGKKVMIVGCDPK-ADSTR 44 (275)
T ss_pred HCCCeEEEEeCCCC-CCccc
Confidence 44689999999987 44444
No 104
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=26.77 E-value=1.9e+02 Score=25.46 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHHHH----HHHHHHHhcCCCEEEE
Q 017454 250 APGAIVLQCGADSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVT 295 (371)
Q Consensus 250 ~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~----~~~~~l~~~~~p~~~~ 295 (371)
+||+|+++.|..=..... .....+.+.|. ++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999964322210 00124444444 4556666666665554
No 105
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=26.45 E-value=1.4e+02 Score=28.66 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHH
Q 017454 235 TRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVA 306 (371)
Q Consensus 235 ~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a 306 (371)
+.++++.|..+.+++++|+||+.+ ..--|++.||.+- .+.|.+.+.-++..+.-=|....+-
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~----~~~L~~~GvDviT~GNH~wdkkei~ 73 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKI----AEELFKAGVDVITMGNHIWDKKEIF 73 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHH----HHHHHHHT-SEEE--TTTTSSTTHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHH----HHHHHhcCCCEEecCcccccCcHHH
Confidence 467778888888999999999875 3456788998754 4556677777887766666655443
No 106
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=26.38 E-value=2.6e+02 Score=28.69 Aligned_cols=68 Identities=15% Similarity=0.028 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecCCCC-CCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchHHHHHHHHHh
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCGADS-LAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETG 314 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG~D~-~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~a~~~~~~~~ 314 (371)
..+++.+..+.+.++|++|+|.++.=+ ..||.+ ....+. ..+.||+.+---||...+-...+...+.
T Consensus 73 ~~L~~~i~~~~~~~~P~~I~V~tTC~se~IGdDi----------~~~~~~--~~~~pVi~v~tpgF~~~s~~~G~d~a~~ 140 (422)
T TIGR02015 73 EDVRCSVHKLADPASYDAIVVINLCVPTASGVPL----------ELLPKR--INGVRVLGIDVPGFGVPTHAEAKDVLVS 140 (422)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCcHHHhcCcH----------HHHHHh--cCCCCeEEEeCCCCCCchHHHHHHHHHH
Confidence 556667777778899999999877221 122211 112221 1477999999999966554555544433
Q ss_pred h
Q 017454 315 I 315 (371)
Q Consensus 315 ~ 315 (371)
.
T Consensus 141 a 141 (422)
T TIGR02015 141 A 141 (422)
T ss_pred H
Confidence 3
No 107
>PRK04531 acetylglutamate kinase; Provisional
Probab=26.32 E-value=1.1e+02 Score=31.42 Aligned_cols=53 Identities=17% Similarity=0.377 Sum_probs=39.3
Q ss_pred HhHhhcCC----cEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcch
Q 017454 244 KVVETYAP----GAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 304 (371)
Q Consensus 244 ~~~~~f~P----d~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~ 304 (371)
+-++.|+- ..+||-.|-.+..+ + .+.+......+.+.+.++|+|.|||...+.
T Consensus 25 ~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~~ 81 (398)
T PRK04531 25 QYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLDA 81 (398)
T ss_pred HHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHHH
Confidence 34555654 78899999777763 2 256777778888889999999999986553
No 108
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=26.28 E-value=2.2e+02 Score=29.36 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=39.6
Q ss_pred HHHHHHHHhHhhcCCcEEEEe-cCCCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVLQ-CGADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivvs-aG~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~a~~~~ 310 (371)
.+.+.|..+.++++|++|+|. .......||.+ ..+.+.+. +.+.|++.+-..||... ....+.
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e~~~~~~~~vi~v~t~gf~g~-~~~G~~ 172 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKAAAEKTGIPVIPVDSEGFYGS-KNLGNK 172 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHHHHHHhCCCEEEEECCCCccc-hhHHHH
Confidence 344455566778999987654 44555566644 33444443 35889999999999664 444443
No 109
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.07 E-value=57 Score=30.71 Aligned_cols=20 Identities=30% Similarity=0.268 Sum_probs=15.1
Q ss_pred HhCCcEEEEeccCCCChhhHH
Q 017454 161 KYHARVLYIDIDVHHGDGVEE 181 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~ 181 (371)
++.+||++||.|- +||=|+.
T Consensus 28 ~~G~kVLliD~Dp-q~~~t~~ 47 (270)
T PRK13185 28 KLGKKVLQIGCDP-KHDSTFT 47 (270)
T ss_pred HCCCeEEEEeccC-Ccchhhh
Confidence 4568999999997 4665643
No 110
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=25.55 E-value=1.7e+02 Score=30.67 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=25.6
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCC
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 299 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGG 299 (371)
..+.+++||+|.+|+ +..+...-.++.+.+++....+.+|+||.
T Consensus 57 ~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 57 ERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred HHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 456779999999974 11233333456677776643344444443
No 111
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=25.47 E-value=2.4e+02 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEEe-------cCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivvs-------aG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
.=+.+.+..+.+.+..+-+.=.+.+||+. +|.|...--+...-.+ ...+..+...+..+..|+|....|
T Consensus 23 al~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~-~~~~~~~~~~l~~~~kPvIaav~G 98 (251)
T TIGR03189 23 IVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAM-LASLHKLVIAMLDSPVPILVAVRG 98 (251)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHH-HHHHHHHHHHHHhCCCCEEEEecC
Confidence 33666777777777764333333456553 3444322000000000 111233455566778898876644
No 112
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=25.45 E-value=2.6e+02 Score=28.98 Aligned_cols=65 Identities=9% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHhHhhc-CCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHH--------hcCCCEEEEeCCCCCcchHHH
Q 017454 238 FKTIISKVVETY-APGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK--------KFNLPLLVTGGGGYTKENVAR 307 (371)
Q Consensus 238 ~~~~l~~~~~~f-~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~--------~~~~p~~~~leGGY~~~~~a~ 307 (371)
+++.|..+.++| +|++|+|..+. =...||.+ ..+.+.+. +.+.|++.+-.+||.. +...
T Consensus 74 L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi----------~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~~ 142 (454)
T cd01973 74 VEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI----------EGVIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMVT 142 (454)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHhhhccCH----------HHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHHH
Confidence 445556677889 69987766553 34445533 22333322 1267889998899986 4344
Q ss_pred HHHHHH
Q 017454 308 CWTVET 313 (371)
Q Consensus 308 ~~~~~~ 313 (371)
.|...+
T Consensus 143 G~~~a~ 148 (454)
T cd01973 143 GYDEAV 148 (454)
T ss_pred HHHHHH
Confidence 554333
No 113
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.77 E-value=3e+02 Score=28.10 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=41.7
Q ss_pred HHHHHHHHhHhhcCCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCcchHHHHHH
Q 017454 237 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~~-----~~~p~~~~leGGY~~~~~a~~~~ 310 (371)
.+++.+..+.++|+|++|+|..+. =...||. ...+.+.++. .+.|++.+--.||... ....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~ 136 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWA 136 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHH
Confidence 344455566778999988776553 2233332 2334444433 3789999999999874 455665
Q ss_pred HHHhhh
Q 017454 311 VETGIL 316 (371)
Q Consensus 311 ~~~~~l 316 (371)
..+..+
T Consensus 137 ~a~~al 142 (417)
T cd01966 137 AAVEAI 142 (417)
T ss_pred HHHHHH
Confidence 544443
No 114
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=24.54 E-value=95 Score=31.07 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred ecCCCCCCCCCCCc-------cccCHHHHHHHHHHH----HhcCCCEEEEeCCCCCcchHHHHHHHHHhhhhCCCCCCCC
Q 017454 257 QCGADSLAGDRLGC-------FNLSIDGHAECVRFV----KKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEI 325 (371)
Q Consensus 257 saG~D~~~~Dplg~-------~~ls~~g~~~~~~~l----~~~~~p~~~~leGGY~~~~~a~~~~~~~~~llg~~~~~~~ 325 (371)
..|||.|..+|.+- +++.+.- .+.+.. ...-.+-|+++ |.++.+|-+.-++.+--++.++|..
T Consensus 131 ~LGF~~Hv~hPhklii~YLqtL~~~~~~--~l~Q~~wNfmNDslRT~v~vr---y~pe~iACaciyLaAR~~eIpLp~~- 204 (367)
T KOG0835|consen 131 ELGFDVHVEHPHKLIIMYLQTLQLPPNL--KLLQAAWNFMNDSLRTDVFVR---YSPESIACACIYLAARNLEIPLPFQ- 204 (367)
T ss_pred HhCCeeeeeccHHHHHHHHHHhcCCCch--hHHHHHHHhhhhccccceeee---cCHHHHHHHHHHHHHhhhcCCCCCC-
Confidence 47999999999753 4554432 222222 22223456665 8898888777676665665444422
Q ss_pred CCchhhhccC
Q 017454 326 PENEYIKYFA 335 (371)
Q Consensus 326 p~~~~~~~~~ 335 (371)
| .+|.+|+
T Consensus 205 P--~Wf~~Fd 212 (367)
T KOG0835|consen 205 P--HWFKAFD 212 (367)
T ss_pred c--cHHHHcC
Confidence 2 4667765
No 115
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=24.27 E-value=2.8e+02 Score=26.03 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEEe-------cCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivvs-------aG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
+=+.+.+..+.+.+..+-..-...+||+. +|.|...--...........+..+...+..+..|+|+...|
T Consensus 27 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G 103 (257)
T PRK05862 27 ALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAG 103 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 34566667776776654333233345553 33332210000000000112233445567778898877644
No 116
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=24.21 E-value=1.9e+02 Score=28.86 Aligned_cols=64 Identities=17% Similarity=0.429 Sum_probs=37.4
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHHHh-cCCCEEEEeCCCCCcchHHHHHH
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYTKENVARCWT 310 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l~~-~~~p~~~~leGGY~~~~~a~~~~ 310 (371)
..+++.+..+.++++|++|+|... ....-||. +..+.+.+.. .+.|++.+--.||. .+....+.
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD----------~~~v~~~~~~~~~~~vi~v~~~gf~-~~~~~G~~ 125 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGDD----------IEAVARELQEEYGIPVIPVHTPGFS-GSYSQGYD 125 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTT----------HHHHHHHHHHHHSSEEEEEE--TTS-SSHHHHHH
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCCC----------HHHHHHHhhcccCCcEEEEECCCcc-CCccchHH
Confidence 344455666778899999887543 23333332 3456666654 57899999999994 33333433
No 117
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=24.05 E-value=2.4e+02 Score=29.38 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHhHhhc-CCcEEEEecC-CCCCCCCCCCccccCHHHHHHHHHHH----H----hcCCCEEEEeCCCCCcchHHH
Q 017454 238 FKTIISKVVETY-APGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFV----K----KFNLPLLVTGGGGYTKENVAR 307 (371)
Q Consensus 238 ~~~~l~~~~~~f-~Pd~IvvsaG-~D~~~~Dplg~~~ls~~g~~~~~~~l----~----~~~~p~~~~leGGY~~~~~a~ 307 (371)
+++.|..+.++| +|++|+|.++ .=...||.+ ..+.+.+ + ..+.|++.+-.+||... ...
T Consensus 77 L~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs-~~~ 145 (457)
T TIGR02932 77 IEEGVLTLARRYPNLRVIPIITTCSTETIGDDI----------EGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS-QVT 145 (457)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCchHHhhcCCH----------HHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc-HHH
Confidence 344455667788 6998888554 333444533 2233322 1 13689999999999974 345
Q ss_pred HHHHHHhhh
Q 017454 308 CWTVETGIL 316 (371)
Q Consensus 308 ~~~~~~~~l 316 (371)
.+...+..+
T Consensus 146 G~~~a~~al 154 (457)
T TIGR02932 146 GYAECVKSV 154 (457)
T ss_pred HHHHHHHHH
Confidence 554444333
No 118
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=23.87 E-value=2.3e+02 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 017454 242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 301 (371)
Q Consensus 242 l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~ 301 (371)
+...+++.+||+|+|..| +++.-..+.+.....+.++++..||-.+
T Consensus 91 i~~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~~~vG~~~d 136 (171)
T cd06533 91 IIERINASGADILFVGLG--------------APKQELWIARHKDRLPVPVAIGVGGSFD 136 (171)
T ss_pred HHHHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEeceeeE
Confidence 334578899999999998 3333334444444455666666555454
No 119
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=23.85 E-value=1.3e+02 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=13.8
Q ss_pred HHHhcCCCEEEEeCCCCC
Q 017454 284 FVKKFNLPLLVTGGGGYT 301 (371)
Q Consensus 284 ~l~~~~~p~~~~leGGY~ 301 (371)
.+.+.+.+=+.++.|||.
T Consensus 91 ~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHTTTSSEEEETTHHH
T ss_pred HHHHcCCCCEEEecChHH
Confidence 366667767788999986
No 120
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=23.82 E-value=81 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.624 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhHhhcCCcEEE
Q 017454 232 TSFTRLFKTIISKVVETYAPGAIV 255 (371)
Q Consensus 232 ~~y~~~~~~~l~~~~~~f~Pd~Iv 255 (371)
..+...+.+-+.+.+++++||+||
T Consensus 71 ~~~~~~~~~~l~~~l~~~~PD~II 94 (169)
T PF06925_consen 71 SALSRLFARRLIRLLREFQPDLII 94 (169)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEE
Confidence 345566666778889999999988
No 121
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.59 E-value=2.8e+02 Score=24.64 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=22.7
Q ss_pred hcCCcEEEEecCC-CCCCCCCCCccccCHHHHH----HHHHHHHhc
Q 017454 248 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHA----ECVRFVKKF 288 (371)
Q Consensus 248 ~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~----~~~~~l~~~ 288 (371)
..+||+|++..|. |+.. .++++.+.|. ++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 5432 2334555444 455555553
No 122
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=23.18 E-value=2.1e+02 Score=28.94 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=42.9
Q ss_pred HHHHHHHHhHhhcCCcEEEEec-CCCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchHHHHHHHHHh
Q 017454 237 LFKTIISKVVETYAPGAIVLQC-GADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVETG 314 (371)
Q Consensus 237 ~~~~~l~~~~~~f~Pd~Ivvsa-G~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~a~~~~~~~~ 314 (371)
-+++.+..+.++++|++|+|.. ..-...||.+ ..+.+.+. +.+.|++.+-..||.. +....|...+.
T Consensus 74 ~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi----------~~v~~~~~~~~~~pvi~v~t~gf~g-~~~~G~~~~~~ 142 (396)
T cd01979 74 ELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL----------EGAAPRLSAEIGVPILVASASGLDY-TFTQGEDTVLA 142 (396)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH----------HHHHHHHhhcCCCcEEEeeCCCccc-cHHHHHHHHHH
Confidence 3445566778889999887654 3444555533 23444443 3578888888888864 34445555554
Q ss_pred hhhC
Q 017454 315 ILLD 318 (371)
Q Consensus 315 ~llg 318 (371)
.+.+
T Consensus 143 alv~ 146 (396)
T cd01979 143 ALVP 146 (396)
T ss_pred HHhh
Confidence 4443
No 123
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=23.17 E-value=2.1e+02 Score=26.03 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=26.8
Q ss_pred HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCC
Q 017454 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL 290 (371)
Q Consensus 243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~ 290 (371)
...+++.+||+|.+|+=...+ .....+..+.+++.+.
T Consensus 128 v~~~~~~~pd~v~lS~~~~~~-----------~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 128 VEKVKKEKPLMLTGSALMTTT-----------MYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHHcCCCEEEEccccccC-----------HHHHHHHHHHHHHcCC
Confidence 346788999999999864333 4456778888888754
No 124
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.15 E-value=2.2e+02 Score=22.90 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=11.3
Q ss_pred HhhcCCcEEEEecC
Q 017454 246 VETYAPGAIVLQCG 259 (371)
Q Consensus 246 ~~~f~Pd~IvvsaG 259 (371)
+.+.+||+|.+|+-
T Consensus 46 i~~~~pdiV~iS~~ 59 (125)
T cd02065 46 AKEEDADVVGLSAL 59 (125)
T ss_pred HHHcCCCEEEEecc
Confidence 44589999999884
No 125
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=22.95 E-value=78 Score=30.06 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.8
Q ss_pred HhCCcEEEEeccCCCChhhHHh
Q 017454 161 KYHARVLYIDIDVHHGDGVEEA 182 (371)
Q Consensus 161 ~~~~RVlivD~DvHHGnGtq~~ 182 (371)
+..+||++||.|.. ||=|+.+
T Consensus 27 ~~G~rVLliD~Dpq-~n~t~~l 47 (279)
T PRK13230 27 ESGKKVLVVGCDPK-ADCTRNL 47 (279)
T ss_pred hCCCEEEEEeeCCc-ccccccc
Confidence 45689999999994 6656544
No 126
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=22.67 E-value=67 Score=32.53 Aligned_cols=22 Identities=14% Similarity=0.449 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEe
Q 017454 235 TRLFKTIISKVVETYAPGAIVLQ 257 (371)
Q Consensus 235 ~~~~~~~l~~~~~~f~Pd~Ivvs 257 (371)
+.+++.. ...+++|+||+||||
T Consensus 224 m~~~E~f-~~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 224 MRAVEQF-TDALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHHH-HHHHHHhCCCEEEEe
Confidence 4555543 456889999999986
No 127
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.50 E-value=2.4e+02 Score=25.37 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 243 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 243 ~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
...+.+.+||+|+|..| +++.=.++.+.....+.++++-.||..+.
T Consensus 93 ~~~I~~s~~dil~VglG--------------~PkQE~~~~~~~~~~~~~v~~gvGg~fd~ 138 (177)
T TIGR00696 93 LAKIARSGAGIVFVGLG--------------CPKQEIWMRNHRHLKPDAVMIGVGGSFDV 138 (177)
T ss_pred HHHHHHcCCCEEEEEcC--------------CcHhHHHHHHhHHhCCCcEEEEeceeeee
Confidence 34567899999999998 23333344443344455666555565653
No 128
>PLN02825 amino-acid N-acetyltransferase
Probab=22.19 E-value=1.9e+02 Score=30.80 Aligned_cols=64 Identities=13% Similarity=0.291 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcchH
Q 017454 234 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 305 (371)
Q Consensus 234 y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~~~ 305 (371)
|...|++.+ |-+++|+=..+||-.|-++..++ . .+.+..-...+.+.++++|+|.|||-..+..
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~~~ 64 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQIDKL 64 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHH
Confidence 345677664 67899999999999998887633 1 1334445556678899999999999865543
No 129
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.95 E-value=97 Score=26.97 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=15.7
Q ss_pred HHHHHhCCcEEEEeccCCCChhhHHh
Q 017454 157 LELLKYHARVLYIDIDVHHGDGVEEA 182 (371)
Q Consensus 157 ~~l~~~~~RVlivD~DvHHGnGtq~~ 182 (371)
..|.++.+||++||.|.-- +.+...
T Consensus 21 ~~la~~g~~VlliD~D~~~-~~~~~~ 45 (195)
T PF01656_consen 21 QALARKGKKVLLIDLDPQA-PNLSIL 45 (195)
T ss_dssp HHHHHTTS-EEEEEESTTS-HHHHHH
T ss_pred hccccccccccccccCccc-ccHHHH
Confidence 3444567999999999854 444333
No 130
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=21.85 E-value=2.6e+02 Score=26.54 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEE-------ecCCCCCCCCCC-Cccc-c--CHHHHHHHHHHHHhcCCCEEEEeCC
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRL-GCFN-L--SIDGHAECVRFVKKFNLPLLVTGGG 298 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~Ivv-------saG~D~~~~Dpl-g~~~-l--s~~g~~~~~~~l~~~~~p~~~~leG 298 (371)
+.+.+..+.+.+..+-..-...+||+ ++|.|...--.. +... . .......+...+..+..|+|+...|
T Consensus 37 ~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 115 (268)
T PRK07327 37 DARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG 115 (268)
T ss_pred CHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 55666667677665433333345555 444554210000 0000 0 0111233455566778899876643
No 131
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=21.75 E-value=3.5e+02 Score=25.31 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHhHhhcCCcEEEEe-------cCCCCCCC-CCCCccccCHHHHHHHHHHHHhcCCCEEEEeC
Q 017454 230 DDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAG-DRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 230 ~D~~y~~~~~~~l~~~~~~f~Pd~Ivvs-------aG~D~~~~-Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~le 297 (371)
=+.+.+..+.+.+..+-..-...+||+. +|.|...- +....-.-....+..+.+.+..+..|+|+...
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~ 104 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVN 104 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 3566677777777664443445567664 45554210 00000000012233455666677888887764
No 132
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.74 E-value=2.8e+02 Score=24.51 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=28.1
Q ss_pred HhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 017454 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 301 (371)
Q Consensus 244 ~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~ 301 (371)
..+++.+||+|+|..| +++.-.++.+....++.++++..||-.+
T Consensus 95 ~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 95 NRINASGPDIVFVGLG--------------APKQERWIARHRQRLPAGVIIGVGGAFD 138 (172)
T ss_pred HHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEECchhh
Confidence 3567899999999998 3333344555555567775555554443
No 133
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.64 E-value=96 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=12.5
Q ss_pred HHHhCCcEEEEeccCC
Q 017454 159 LLKYHARVLYIDIDVH 174 (371)
Q Consensus 159 l~~~~~RVlivD~DvH 174 (371)
|.+..+||++||.|..
T Consensus 26 la~~g~~VlliD~D~q 41 (246)
T TIGR03371 26 LKLLGEPVLAIDLDPQ 41 (246)
T ss_pred HHhCCCcEEEEeCCCc
Confidence 3345689999999984
No 134
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=21.60 E-value=3.4e+02 Score=27.11 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCChHHHHHHHH----------HHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHH---HHHHHH-HHHhcCCCEE
Q 017454 228 GIDDTSFTRLFK----------TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG---HAECVR-FVKKFNLPLL 293 (371)
Q Consensus 228 g~~D~~y~~~~~----------~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g---~~~~~~-~l~~~~~p~~ 293 (371)
...-++|...++ ..+.|++++-+=-+|-|+...==...+-+|.+..|-.+ |..+.| .|..+|..|.
T Consensus 125 wl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~Vs 204 (322)
T KOG1610|consen 125 WLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVS 204 (322)
T ss_pred cccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEE
Confidence 345566765443 45678888888889999888777777778888888655 444444 4667899887
Q ss_pred EEeCCCCCcchHH--HHHHHHHhhhhCCCCCCCCCCchhhhccCCCc
Q 017454 294 VTGGGGYTKENVA--RCWTVETGILLDTELPNEIPENEYIKYFAPEC 338 (371)
Q Consensus 294 ~~leGGY~~~~~a--~~~~~~~~~llg~~~~~~~p~~~~~~~~~p~~ 338 (371)
++--|.+. .+++ ..|....+.+.++ +|++ -.+.||+||
T Consensus 205 iiePG~f~-T~l~~~~~~~~~~~~~w~~-l~~e-----~k~~YGedy 244 (322)
T KOG1610|consen 205 IIEPGFFK-TNLANPEKLEKRMKEIWER-LPQE-----TKDEYGEDY 244 (322)
T ss_pred EeccCccc-cccCChHHHHHHHHHHHhc-CCHH-----HHHHHHHHH
Confidence 77555444 4444 4566666666643 3333 234455555
No 135
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.50 E-value=3.6e+02 Score=27.58 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCH---HHHHHHHHHHHhcCCCEEEEeCCCCCc
Q 017454 233 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI---DGHAECVRFVKKFNLPLLVTGGGGYTK 302 (371)
Q Consensus 233 ~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~---~g~~~~~~~l~~~~~p~~~~leGGY~~ 302 (371)
+....++.++ ..+.+.+||+|+++ | |.. -...-+. +-+.++.+.+++.+.|++++ .|--+.
T Consensus 23 ~~~~~l~~l~-~~i~~~~~D~viIa-G-Dif-----D~~~p~~~a~~~~~~~l~~L~~~~~~v~~I-~GNHD~ 86 (407)
T PRK10966 23 EHQAFLDWLL-EQVQEHQVDAIIVA-G-DIF-----DTGSPPSYARELYNRFVVNLQQTGCQLVVL-AGNHDS 86 (407)
T ss_pred HHHHHHHHHH-HHHHhcCCCEEEEC-C-ccc-----cCCCCcHHHHHHHHHHHHHHHhcCCcEEEE-cCCCCC
Confidence 4555565555 45678999998874 2 332 1111111 22344555666677887776 465554
No 136
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=20.88 E-value=1.3e+02 Score=30.59 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=25.9
Q ss_pred CChHHHHHHHHHHHHHhHhhcCCcEEEEec
Q 017454 229 IDDTSFTRLFKTIISKVVETYAPGAIVLQC 258 (371)
Q Consensus 229 ~~D~~y~~~~~~~l~~~~~~f~Pd~Ivvsa 258 (371)
.+++++++.=++++...++.|+||+++|-.
T Consensus 85 ~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 85 GDLEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 457888888889999999999999999853
No 137
>PLN02512 acetylglutamate kinase
Probab=20.78 E-value=2.8e+02 Score=27.16 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHHhHhhcCCcEEEEecCCCCCCCCCCCccccCHHHHHHHHHHHHhcCCCEEEEeCCCCCcc
Q 017454 231 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303 (371)
Q Consensus 231 D~~y~~~~~~~l~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~ls~~g~~~~~~~l~~~~~p~~~~leGGY~~~ 303 (371)
...+...|++.+ |-+.+|+=+.+|+=.|-++..++.+ .+.+.+-...+...+.++|+|.|||....
T Consensus 28 ~~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~~------~~~~~~di~~l~~~g~~iVlVHGgG~~i~ 93 (309)
T PLN02512 28 NLSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPEL------KAGVIRDLVLLSCVGLRPVLVHGGGPEIN 93 (309)
T ss_pred hHHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChhH------HHHHHHHHHHHHHCCCCEEEEECCcHHHH
Confidence 346788888875 6788999899999988776544321 12222223356677889999999988643
No 138
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=20.78 E-value=3.7e+02 Score=25.31 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCCEEEEeC
Q 017454 279 AECVRFVKKFNLPLLVTGG 297 (371)
Q Consensus 279 ~~~~~~l~~~~~p~~~~le 297 (371)
..+...+..+..|+|+...
T Consensus 89 ~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 89 ADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred HHHHHHHHcCCCCEEEEEC
Confidence 3455566677889886653
No 139
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.63 E-value=4.1e+02 Score=27.70 Aligned_cols=55 Identities=24% Similarity=0.479 Sum_probs=35.0
Q ss_pred HHHHHHHhHhhcCCcEEEEec-CCCCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCc
Q 017454 238 FKTIISKVVETYAPGAIVLQC-GADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 302 (371)
Q Consensus 238 ~~~~l~~~~~~f~Pd~Ivvsa-G~D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~ 302 (371)
+.+.|..+.++++|++|+|.. ......||.+ ..+.+.+. +.+.|++.+--.||..
T Consensus 107 L~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi----------~~v~~~~~~~~~~pvi~v~t~Gf~g 163 (475)
T PRK14478 107 LFKAIDEIIEKYAPPAVFVYQTCVVALIGDDI----------DAVCKRAAEKFGIPVIPVNSPGFVG 163 (475)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCChHHHhccCH----------HHHHHHHHHhhCCCEEEEECCCccc
Confidence 344455567779999876644 4444555533 33444443 3588999999889876
No 140
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=20.32 E-value=83 Score=29.58 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=13.9
Q ss_pred HHhCCcEEEEeccCCCChhh
Q 017454 160 LKYHARVLYIDIDVHHGDGV 179 (371)
Q Consensus 160 ~~~~~RVlivD~DvHHGnGt 179 (371)
.++.+||++||.|. +||=+
T Consensus 25 a~~G~rvlliD~Dp-q~~~~ 43 (267)
T cd02032 25 AKRGKKVLQIGCDP-KHDST 43 (267)
T ss_pred HHCCCcEEEEecCC-CCCcc
Confidence 35578999999996 35533
No 141
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=20.30 E-value=4.2e+02 Score=26.96 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHHHHHHhHhhcCCcEEEEecCC-CCCCCCCCCccccCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcchHHHHHHHHH
Q 017454 236 RLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVET 313 (371)
Q Consensus 236 ~~~~~~l~~~~~~f~Pd~IvvsaG~-D~~~~Dplg~~~ls~~g~~~~~~~l~-~~~~p~~~~leGGY~~~~~a~~~~~~~ 313 (371)
..+++.+..+.+.|+|++|+|.+.. -...||.+ ..+.+.++ +.+.|++.+---||... ...++...+
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi----------~~v~~~~~~~~~~pVi~v~tpgf~g~-~~~G~~~~~ 138 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDL----------EGLAERLSTNFGVPVLFAPASGLDYT-FTQGEDTVL 138 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhH----------HHHHHHHHHhhCCCEEEeeCCCcccc-HHHHHHHHH
Confidence 3555666677888999999887652 33333322 23333333 24678888877788642 233343343
Q ss_pred hhhh
Q 017454 314 GILL 317 (371)
Q Consensus 314 ~~ll 317 (371)
..+.
T Consensus 139 ~alv 142 (407)
T TIGR01279 139 AALV 142 (407)
T ss_pred HHHH
Confidence 3333
No 142
>PRK10037 cell division protein; Provisional
Probab=20.28 E-value=77 Score=29.62 Aligned_cols=20 Identities=25% Similarity=-0.006 Sum_probs=14.8
Q ss_pred HHHhCCcEEEEeccCCCChhh
Q 017454 159 LLKYHARVLYIDIDVHHGDGV 179 (371)
Q Consensus 159 l~~~~~RVlivD~DvHHGnGt 179 (371)
|.++.+||++||.|-+ ||-+
T Consensus 26 La~~G~rVLlID~D~q-~~~s 45 (250)
T PRK10037 26 LQMLGENVLVIDACPD-NLLR 45 (250)
T ss_pred HHhcCCcEEEEeCChh-hhHH
Confidence 4455789999999994 5544
Done!