RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017454
         (371 letters)



>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score =  280 bits (716), Expect = 1e-92
 Identities = 145/339 (42%), Positives = 218/339 (64%), Gaps = 3/339 (0%)

Query: 9   YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
           Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  Y
Sbjct: 5   YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 69  VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
           ++ L +++ +       +  +Y LG DCP  E +F++     G TI AA+ L + +C +A
Sbjct: 63  LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
           INW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 189 VMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET 248
           VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + 
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308
           + P A+VLQ GAD++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301

Query: 309 WTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHI 347
           WT  TG++L   L +EIP++E+   + P+  L I     
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCR 340


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score =  239 bits (610), Expect = 1e-76
 Identities = 106/327 (32%), Positives = 154/327 (47%), Gaps = 4/327 (1%)

Query: 6   KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHS 65
           K+      D G   +  NHP+K  R+ +      + +L  + E+ +   A   EL  FH+
Sbjct: 2   KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHT 61

Query: 66  ADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC 125
            DY+  L                    G + PV   +F    +  G T+ A         
Sbjct: 62  EDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNV 121

Query: 126 DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHAR-VLYIDIDVHHGDGVEEAFY 184
               N AGG+HHA K  A+GFCYIN+  +GI  L K   + +LYID+D HH DGV+EAFY
Sbjct: 122 AF--NPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFY 179

Query: 185 FTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 243
            TD+V  +S H+  +  FP   G ++EIGE +GK Y +N+PL  G++D  F    +  + 
Sbjct: 180 DTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLE 239

Query: 244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 303
            V E + P   +LQ G D L  D L  FNLS     +    V++     +  GGGGY   
Sbjct: 240 IVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPY 299

Query: 304 NVARCWTVETGILLDTELPNEIPENEY 330
            +AR WT+    L   E+P ++     
Sbjct: 300 ALARAWTLIWCELSGREVPEKLNNKAK 326


>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score =  182 bits (461), Expect = 2e-54
 Identities = 69/333 (20%), Positives = 126/333 (37%), Gaps = 26/333 (7%)

Query: 21  GPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLH-----RI 75
              HP    R+      +    L  + E  R  KA   EL   HS  +V         R+
Sbjct: 24  NSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 83

Query: 76  TPDTQHLFRQELTKYNLGEDC--------PVFENL--FEFCQIYAGGTIDAARRLNNQLC 125
             D   L      +  +   C         ++  L      +  AG   D A ++ ++  
Sbjct: 84  KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASREL 143

Query: 126 DIAINWAGGL-HHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEA 182
                      HHA    A GFC+ N + +   +L +    +++L +D DVHHG+G ++ 
Sbjct: 144 KNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQT 203

Query: 183 FYFTDRVMTVSFHKFGDLF-FPGTGDVKEIGEREGKFYAINVPLKD----GIDDTSFTRL 237
           FY    V+ +S H+  D   FPG+G V E+G   G+ + +NV         + D  +   
Sbjct: 204 FYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAA 263

Query: 238 FKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCFNLSIDGHAECVRFVKKF-NLPLLV 294
           F+ ++  +   ++P  +++  G D+  G    LG +++S        + +       +++
Sbjct: 264 FRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVL 323

Query: 295 TGGGGYTKENVARCWTVETGILLDTELPNEIPE 327
              GG+    +          LL   +     E
Sbjct: 324 ALEGGHDLTAICDASEACVAALLGNRVDPLSEE 356


>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
           protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
          Length = 144

 Score = 26.6 bits (58), Expect = 3.4
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 45  KKMEIYRPHKAYPVELAQFHSA--DYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENL 102
           KK E+Y  ++  PV L  +     D+      ++  TQ L     T+ + GE+       
Sbjct: 72  KKFEVYENNQKLPVRLVSYSPVPEDHAYIRFPVSDGTQELKIVSSTQIDDGEETNYDYTK 131

Query: 103 FEFCQ 107
             F +
Sbjct: 132 LVFAK 136


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
           7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 26.3 bits (56), Expect = 6.0
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 275 IDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 319
           + GH + V    +F    +V+G      +N  + W+  TG  L T
Sbjct: 12  LKGHDDHVITCLQFCGNRIVSGS----DDNTLKVWSAVTGKCLRT 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,526,816
Number of extensions: 76003
Number of successful extensions: 287
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 14
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)